Psyllid ID: psy14949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccHHHcccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccccccccccccccEccccccccccccccccccccEcHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSVENGKKIFTRACAQChtaneggankvgpnlfgvvgrqtgqapgfdytdanknkgitwsASTLDIYlqnpkkyipgtkmvfpglrkekdREDLIAYLSTLH
Flexible Loop (DISEMBL)
msvengkkIFTRACAQCHTAneggankvgpNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYlqnpkkyipgtkmvfpglrkekdrEDLIAYLSTLH
Low Complexity Region (SEG)
MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH
Disordered region (IsUnstruct)
********IFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLR*******LIAY*****
Disordered Region (DISOPRED)
MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH
Disordered Region (DISEMBL)
MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH
Disordered Region (DISPRO)
*SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P68096	105	Cytochrome c OS=Equus bur	N/A	N/A	0.941	0.914	0.708	1e-36
P68097	105	Cytochrome c OS=Equus asi	N/A	N/A	0.941	0.914	0.708	1e-36
P00024	105	Cytochrome c OS=Lithobate	N/A	N/A	0.960	0.933	0.683	1e-36
P00004	105	Cytochrome c OS=Equus cab	yes	N/A	0.960	0.933	0.693	1e-36
P62896	105	Cytochrome c OS=Ovis arie	N/A	N/A	0.941	0.914	0.708	2e-36
P62895	105	Cytochrome c OS=Sus scrof	yes	N/A	0.941	0.914	0.708	2e-36
P62894	105	Cytochrome c OS=Bos tauru	yes	N/A	0.941	0.914	0.708	2e-36
P00040	108	Cytochrome c OS=Schistoce	N/A	N/A	0.941	0.888	0.718	4e-36
P00027	105	Cytochrome c OS=Squalus s	N/A	N/A	0.941	0.914	0.687	5e-36
P00013	105	Cytochrome c OS=Miniopter	N/A	N/A	0.941	0.914	0.697	5e-36

>sp|P68096|CYC_EQUBU Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct: 4  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEE 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYL 99

Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.
Equus burchelli (taxid: 9790)

>sp|P68097|CYC_EQUAS Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct: 4  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEE 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYL 99

Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.

Equus asinus (taxid: 9793)

>sp|P00024|CYC_LITCT Cytochrome c OS=Lithobates catesbeiana PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 82/98 (83%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           VE GKKIF + CAQCHT  +GG +KVGPNL+G++GR+TGQA GF YTDANKNKGITW   
Sbjct: 4   VEKGKKIFVQKCAQCHTCEKGGKHKVGPNLYGLIGRKTGQAAGFSYTDANKNKGITWGED 63

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TL  YL+NPKKYIPGTKM+F G++K+ +R+DLIAYL +
Sbjct: 64  TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKS 101

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Lithobates catesbeiana (taxid: 8400)

>sp|P00004|CYC_HORSE Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 79/98 (80%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW  
Sbjct: 3   DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 62

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
            TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL 
Sbjct: 63  ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLK 100

Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.

Equus caballus (taxid: 9796)

>sp|P62896|CYC_SHEEP Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct: 4  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 99

Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.

Ovis aries (taxid: 9940)

>sp|P62895|CYC_PIG Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct: 4  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 99

Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.

Sus scrofa (taxid: 9823)

>sp|P62894|CYC_BOVIN Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct: 4  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 99

Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.

Bos taurus (taxid: 9913)

>sp|P00040|CYC_SCHGR Cytochrome c OS=Schistocerca gregaria PE=1 SV=2

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 79/96 (82%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           VE GKKIF + CAQCHT   GG +K GPNL G+ GR+TGQAPGF YTDANK+KGITW  +
Sbjct: 8   VEKGKKIFVQRCAQCHTVEAGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKSKGITWDEN 67

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           TL IYL+NPKKYIPGTKMVF GL+K ++R DLIAYL
Sbjct: 68  TLFIYLENPKKYIPGTKMVFAGLKKPEERADLIAYL 103

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Schistocerca gregaria (taxid: 7010)

>sp|P00027|CYC_SQUSU Cytochrome c OS=Squalus suckleyi GN=cyc PE=1 SV=2

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 78/96 (81%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKK+F + CAQCHT   GG +K GPNL G+ GR+TGQA GF YTDANK+KGITW   
Sbjct: 4  VEKGKKVFVQKCAQCHTVENGGKHKTGPNLSGLFGRKTGQAQGFSYTDANKSKGITWQQE 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL IYL+NPKKYIPGTKM+F GL+K+ +R+DLIAYL
Sbjct: 64 TLRIYLENPKKYIPGTKMIFAGLKKKSERQDLIAYL 99

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Squalus suckleyi (taxid: 7798)

>sp|P00013|CYC_MINSC Cytochrome c OS=Miniopterus schreibersii GN=CYCS PE=1 SV=2

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 78/96 (81%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW  +
Sbjct: 4  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEA 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K  +R DLIAYL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKSAERADLIAYL 99

Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases.

Miniopterus schreibersii (taxid: 9433)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
3930736	105	cytochrome c [Tigriopus californicus]	0.960	0.933	0.704	1e-35
3930728	105	cytochrome c [Tigriopus californicus] gi	0.960	0.933	0.704	1e-35
3930750	102	cytochrome c [Tigriopus californicus]	0.960	0.960	0.704	1e-35
3930746	103	cytochrome c [Tigriopus californicus] gi	0.960	0.951	0.704	1e-35
242011950	106	Cytochrome c, putative [Pediculus humanu	0.960	0.924	0.683	1e-35
309242901	104	cytochrome c [Marsupenaeus japonicus]	0.950	0.932	0.711	2e-35
3930752	101	cytochrome c [Tigriopus californicus]	0.950	0.960	0.711	3e-35
242020030	102	Cytochrome c, putative [Pediculus humanu	0.980	0.980	0.68	3e-35
255683507	105	cytochrome c [Equus caballus] gi|1193880	0.941	0.914	0.708	4e-35
226372594	105	Cytochrome c [Rana catesbeiana]	0.960	0.933	0.683	4e-35

>gi|3930736|gb|AAC80537.1| cytochrome c [Tigriopus californicus]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 81/98 (82%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           ++ GKKIF + C QCHT   GG +KVGPNL G+ GRQTGQA GF+YTDANK+KG+TW+  
Sbjct: 4   IDKGKKIFAQKCTQCHTIEAGGKHKVGPNLHGMYGRQTGQAAGFNYTDANKSKGVTWNEE 63

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TLDIYL NPKKYIPGTKMVF GL+K+ DREDLIAYL +
Sbjct: 64  TLDIYLTNPKKYIPGTKMVFAGLKKKGDREDLIAYLKS 101

Source: Tigriopus californicus

Species: Tigriopus californicus

Genus: Tigriopus

Family: Harpacticidae

Order: Harpacticoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3930728|gb|AAC80533.1| cytochrome c [Tigriopus californicus] gi|3930730|gb|AAC80534.1| cytochrome c [Tigriopus californicus] gi|3930734|gb|AAC80536.1| cytochrome c [Tigriopus californicus] gi|3930738|gb|AAC80538.1| cytochrome c [Tigriopus californicus] gi|3930740|gb|AAC80539.1| cytochrome c [Tigriopus californicus] gi|3930742|gb|AAC80540.1| cytochrome c [Tigriopus californicus] gi|3930744|gb|AAC80541.1| cytochrome c [Tigriopus californicus] gi|3930754|gb|AAC80546.1| cytochrome c [Tigriopus californicus] gi|4163999|gb|AAD05303.1| cytochrome c [Tigriopus californicus]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 81/98 (82%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           ++ GKKIF + C QCHT   GG +KVGPNL G+ GRQTGQA GF+YTDANK+KG+TW+  
Sbjct: 4   IDKGKKIFVQKCTQCHTIEAGGKHKVGPNLHGMYGRQTGQAAGFNYTDANKSKGVTWNEE 63

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TLDIYL NPKKYIPGTKMVF GL+K+ DREDLIAYL +
Sbjct: 64  TLDIYLTNPKKYIPGTKMVFAGLKKKGDREDLIAYLKS 101

Source: Tigriopus californicus

Species: Tigriopus californicus

Genus: Tigriopus

Family: Harpacticidae

Order: Harpacticoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3930750|gb|AAC80544.1| cytochrome c [Tigriopus californicus]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 81/98 (82%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           ++ GKKIF + C QCHT   GG +KVGPNL G+ GRQTGQA GF+YTDANK+KG+TW+  
Sbjct: 1   IDKGKKIFVQKCTQCHTIEAGGKHKVGPNLHGMYGRQTGQAAGFNYTDANKSKGVTWNEE 60

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TLDIYL NPKKYIPGTKMVF GL+K+ DREDLIAYL +
Sbjct: 61  TLDIYLTNPKKYIPGTKMVFAGLKKKGDREDLIAYLKS 98

Source: Tigriopus californicus

Species: Tigriopus californicus

Genus: Tigriopus

Family: Harpacticidae

Order: Harpacticoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3930746|gb|AAC80542.1| cytochrome c [Tigriopus californicus] gi|3930748|gb|AAC80543.1| cytochrome c [Tigriopus californicus]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 81/98 (82%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           ++ GKKIF + C QCHT   GG +KVGPNL G+ GRQTGQA GF+YTDANK+KG+TW+  
Sbjct: 2   IDKGKKIFVQKCTQCHTIEAGGKHKVGPNLHGMYGRQTGQAAGFNYTDANKSKGVTWNEE 61

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TLDIYL NPKKYIPGTKMVF GL+K+ DREDLIAYL +
Sbjct: 62  TLDIYLTNPKKYIPGTKMVFAGLKKKGDREDLIAYLKS 99

Source: Tigriopus californicus

Species: Tigriopus californicus

Genus: Tigriopus

Family: Harpacticidae

Order: Harpacticoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011950|ref|XP_002426706.1| Cytochrome c, putative [Pediculus humanus corporis] gi|212510877|gb|EEB13968.1| Cytochrome c, putative [Pediculus humanus corporis]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 85/98 (86%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           +VE GKKIF R+C+QCHT  +GG +KVGPNL G++GR+TGQ+PG+ YTDANK+KGITW++
Sbjct: 5   NVEKGKKIFVRSCSQCHTVEKGGKHKVGPNLNGLIGRKTGQSPGYTYTDANKSKGITWNS 64

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
            TL +YL+NPKKYIPGTKMVF GL+K ++R DLIAYL 
Sbjct: 65  ETLFLYLENPKKYIPGTKMVFAGLKKAQERHDLIAYLE 102

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|309242901|dbj|BAJ22990.1| cytochrome c [Marsupenaeus japonicus]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           V+ GKK+F + CAQCHT   GG +K GPNL G+ GRQTGQAPG+ YTDANK+KGITW A 
Sbjct: 4   VQKGKKLFVQRCAQCHTVEAGGKHKTGPNLHGLFGRQTGQAPGYVYTDANKSKGITWGAD 63

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
           TLD+YL NPKKYIPGTKMVF GL+KE +R DLIAYL+
Sbjct: 64  TLDVYLTNPKKYIPGTKMVFAGLKKEGERADLIAYLA 100

Source: Marsupenaeus japonicus

Species: Marsupenaeus japonicus

Genus: Marsupenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3930752|gb|AAC80545.1| cytochrome c [Tigriopus californicus]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%)

Query: 4   ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAST 63
           + GKKIF + C QCHT   GG +KVGPNL G+ GRQTGQA GF+YTDANK+KG+TW+  T
Sbjct: 1   DKGKKIFVQKCTQCHTIEAGGKHKVGPNLHGMYGRQTGQAAGFNYTDANKSKGVTWNEET 60

Query: 64  LDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           LDIYL NPKKYIPGTKMVF GL+K+ DREDLIAYL +
Sbjct: 61  LDIYLTNPKKYIPGTKMVFAGLKKKGDREDLIAYLKS 97

Source: Tigriopus californicus

Species: Tigriopus californicus

Genus: Tigriopus

Family: Harpacticidae

Order: Harpacticoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020030|ref|XP_002430460.1| Cytochrome c, putative [Pediculus humanus corporis] gi|212515606|gb|EEB17722.1| Cytochrome c, putative [Pediculus humanus corporis]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 83/100 (83%)

Query: 1   MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWS 60
           MS E GKKIF   CAQCHTA +GG +KVGPNL+G+ GR+TGQA G+ YTDANKNK +TW 
Sbjct: 1   MSAEKGKKIFLLKCAQCHTAEKGGKHKVGPNLYGLYGRKTGQAEGYAYTDANKNKNVTWD 60

Query: 61  ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           A TLD YL +PKKYIPGTKMVF GL+K+++R+D+IAYL +
Sbjct: 61  ARTLDEYLTDPKKYIPGTKMVFAGLKKKEERDDIIAYLKS 100

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255683507|ref|NP_001157486.1| cytochrome c [Equus caballus] gi|119388041|sp|P68097.2|CYC_EQUAS RecName: Full=Cytochrome c gi|119388042|sp|P68096.2|CYC_EQUBU RecName: Full=Cytochrome c

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct: 4  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEE 63

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYL 99

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226372594|gb|ACO51922.1| Cytochrome c [Rana catesbeiana]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 83/98 (84%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           VE GKKIF + CAQCHT  +GG +KVGPNL+G++GR+TGQA GF YTDANKNKGITW+  
Sbjct: 4   VEKGKKIFVQKCAQCHTCEKGGKHKVGPNLYGLIGRKTGQAAGFSYTDANKNKGITWNED 63

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TL  YL+NPKKYIPGTKM+F G++K+ +R+DLIAYL +
Sbjct: 64  TLMEYLENPKKYIPGTKMIFAGIKKQGERKDLIAYLKS 101

Source: Rana catesbeiana

Species: Rana catesbeiana

Genus: Rana

Family: Ranidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
UNIPROTKB|P62894	105	CYCS "Cytochrome c" [Bos tauru	0.941	0.914	0.708	2.4e-35
UNIPROTKB|P62895	105	CYCS "Cytochrome c" [Sus scrof	0.941	0.914	0.708	2.4e-35
UNIPROTKB|P00004	105	CYCS "Cytochrome c" [Equus cab	0.941	0.914	0.708	2.4e-35
UNIPROTKB|E1BA13	105	LOC100847304 "Uncharacterized	0.941	0.914	0.697	6.5e-35
UNIPROTKB|P00013	105	CYCS "Cytochrome c" [Miniopter	0.941	0.914	0.697	8.3e-35
UNIPROTKB|P00011	105	CYCS "Cytochrome c" [Canis lup	0.941	0.914	0.697	1.7e-34
UNIPROTKB|P00012	105	CYCS "Cytochrome c" [Mirounga	0.941	0.914	0.697	1.7e-34
UNIPROTKB|P00007	105	CYCS "Cytochrome c" [Hippopota	0.941	0.914	0.687	2.2e-34
MGI|MGI:88579	105	Cyct "cytochrome c, testis" [M	0.931	0.904	0.684	2.8e-34
UNIPROTKB|I3LVP1	105	LOC100626234 "Uncharacterized	0.941	0.914	0.687	3.6e-34

UNIPROTKB|P62894 CYCS "Cytochrome c" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 99

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|P62895 CYCS "Cytochrome c" [Sus scrofa (taxid:9823)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 99

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|P00004 CYCS "Cytochrome c" [Equus caballus (taxid:9796)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYL 99

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|E1BA13 LOC100847304 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 67/96 (69%), Positives = 79/96 (82%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR++GQAPGF YTDANKNKGITW   
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKSGQAPGFSYTDANKNKGITWGEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 99

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|P00013 CYCS "Cytochrome c" [Miniopterus schreibersii (taxid:9433)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 67/96 (69%), Positives = 78/96 (81%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW  +
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEA 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K  +R DLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKSAERADLIAYL 99

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|P00011 CYCS "Cytochrome c" [Canis lupus familiaris (taxid:9615)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/96 (69%), Positives = 77/96 (80%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K  +R DLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYL 99

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|P00012 CYCS "Cytochrome c" [Mirounga leonina (taxid:9715)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/96 (69%), Positives = 77/96 (80%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K  +R DLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYL 99

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|P00007 CYCS "Cytochrome c" [Hippopotamus amphibius (taxid:9833)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/96 (68%), Positives = 78/96 (81%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQ+PGF YTDANKNKGITW   
Sbjct:     4 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQSPGFSYTDANKNKGITWGEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKYIPGTKM+F G++K+ +R DLIAYL
Sbjct:    64 TLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYL 99

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

MGI|MGI:88579 Cyct "cytochrome c, testis" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 65/95 (68%), Positives = 78/95 (82%)

Query:     4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAST 63
             E GKKIF + CAQCHT  +GG +K GPNL+G+ GR+TGQAPGF YTDANKNKG+ WS  T
Sbjct:     5 EAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEET 64

Query:    64 LDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             L  YL+NPKKYIPGTKM+F G++K+ +REDLI YL
Sbjct:    65 LMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYL 99

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|I3LVP1 LOC100626234 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 66/96 (68%), Positives = 78/96 (81%)

Query:     3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             V+ GKKIF + CAQCHT  +GG +K GPNL G+ G +TGQAPGF YTDANKNKGITW   
Sbjct:     4 VKKGKKIFVQKCAQCHTVEKGGKHKTGPNLQGLFGWKTGQAPGFSYTDANKNKGITWGEE 63

Query:    63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             TL  YL+NPKKY+PGTKM+F G++K+ DREDLIAYL
Sbjct:    64 TLMEYLENPKKYVPGTKMIFAGIKKKGDREDLIAYL 99

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00020	CYC_ANAPL	No assigned EC number	0.6770	0.9411	0.9142	N/A	N/A
P00007	CYC_HIPAM	No assigned EC number	0.6875	0.9411	0.9142	N/A	N/A
P00004	CYC_HORSE	No assigned EC number	0.6938	0.9607	0.9333	yes	N/A
P67882	CYC_MELGA	No assigned EC number	0.6666	0.9411	0.9142	yes	N/A
P00024	CYC_LITCT	No assigned EC number	0.6836	0.9607	0.9333	N/A	N/A
P00026	CYC_CYPCA	No assigned EC number	0.6632	0.9607	0.9423	N/A	N/A
P00027	CYC_SQUSU	No assigned EC number	0.6875	0.9411	0.9142	N/A	N/A
P00028	CYC_LAMTR	No assigned EC number	0.6562	0.9411	0.9142	N/A	N/A
P00029	CYC_ASTRU	No assigned EC number	0.6836	0.9607	0.9423	N/A	N/A
P00040	CYC_SCHGR	No assigned EC number	0.7187	0.9411	0.8888	N/A	N/A
P10715	CYC2_RAT	No assigned EC number	0.6666	0.9411	0.9142	yes	N/A
P00008	CYC_RABIT	No assigned EC number	0.6804	0.9509	0.9238	yes	N/A
P00022	CYC_CHESE	No assigned EC number	0.6770	0.9411	0.9142	N/A	N/A
P81280	CYC_ALLMI	No assigned EC number	0.6875	0.9411	0.9142	N/A	N/A
P62895	CYC_PIG	No assigned EC number	0.7083	0.9411	0.9142	yes	N/A
P62894	CYC_BOVIN	No assigned EC number	0.7083	0.9411	0.9142	yes	N/A
P62897	CYC_MOUSE	No assigned EC number	0.6875	0.9411	0.9142	no	N/A
P62896	CYC_SHEEP	No assigned EC number	0.7083	0.9411	0.9142	N/A	N/A
Q6DKE1	CYC2_XENLA	No assigned EC number	0.6562	0.9411	0.9142	N/A	N/A
Q1KKS2	CYCB_TAKRU	No assigned EC number	0.6326	0.9607	0.9333	N/A	N/A
Q52V08	CYC_MACSY	No assigned EC number	0.6666	0.9411	0.9142	N/A	N/A
P00038	CYC_APIME	No assigned EC number	0.6979	0.9411	0.8888	yes	N/A
P62898	CYC_RAT	No assigned EC number	0.6875	0.9411	0.9142	no	N/A
Q3SZT9	CYC2_BOVIN	No assigned EC number	0.6770	0.9411	0.9142	no	N/A
P00036	CYC_LUCCU	No assigned EC number	0.6836	0.9607	0.9074	N/A	N/A
Q640U4	CYC1_XENTR	No assigned EC number	0.6666	0.9411	0.9142	yes	N/A
P84030	CYC2_CERCA	No assigned EC number	0.6734	0.9607	0.9074	N/A	N/A
P00015	CYC2_MOUSE	No assigned EC number	0.6770	0.9411	0.9142	yes	N/A
P00014	CYC_MACGI	No assigned EC number	0.6804	0.9509	0.9238	N/A	N/A
P00017	CYC_APTPA	No assigned EC number	0.6666	0.9411	0.9142	N/A	N/A
P00011	CYC_CANFA	No assigned EC number	0.6979	0.9411	0.9142	yes	N/A
P00013	CYC_MINSC	No assigned EC number	0.6979	0.9411	0.9142	N/A	N/A
P00012	CYC_MIRLE	No assigned EC number	0.6979	0.9411	0.9142	N/A	N/A
P68097	CYC_EQUAS	No assigned EC number	0.7083	0.9411	0.9142	N/A	N/A
P68096	CYC_EQUBU	No assigned EC number	0.7083	0.9411	0.9142	N/A	N/A
P00019	CYC_STRCA	No assigned EC number	0.6666	0.9411	0.9142	N/A	N/A
Q6QLW4	CYC_PECGU	No assigned EC number	0.6914	0.9215	0.8623	N/A	N/A
P00031	CYC_MACMA	No assigned EC number	0.6979	0.9411	0.9142	N/A	N/A
P00018	CYC_DRONO	No assigned EC number	0.6666	0.9411	0.9142	N/A	N/A
Q6IQM2	CYC_DANRE	No assigned EC number	0.6530	0.9607	0.9423	yes	N/A
P68099	CYC_CAMDR	No assigned EC number	0.6875	0.9411	0.9142	N/A	N/A
P67881	CYC_CHICK	No assigned EC number	0.6666	0.9411	0.9142	yes	N/A
P00037	CYC_SAMCY	No assigned EC number	0.6907	0.9509	0.8981	N/A	N/A
P12831	CYC_SARPE	No assigned EC number	0.6938	0.9607	0.9074	N/A	N/A
P68100	CYC_ESCGI	No assigned EC number	0.6875	0.9411	0.9142	N/A	N/A
P00039	CYC_MANSE	No assigned EC number	0.6875	0.9411	0.8888	N/A	N/A
P68098	CYC_LAMGU	No assigned EC number	0.6875	0.9411	0.9142	N/A	N/A
P84029	CYC2_DROME	No assigned EC number	0.6734	0.9607	0.9074	yes	N/A
P00021	CYC_COLLI	No assigned EC number	0.6666	0.9411	0.9142	N/A	N/A
B4USV4	CYC_OTOGA	No assigned EC number	0.6597	0.9509	0.9238	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
COG3474	135	COG3474, COG3474, Cytochrome c2 [Energy production	2e-47
PTZ00048	115	PTZ00048, PTZ00048, cytochrome c; Provisional	3e-44
PTZ00405	114	PTZ00405, PTZ00405, cytochrome c; Provisional	1e-40
pfam00034	81	pfam00034, Cytochrom_C, Cytochrome c	9e-09
pfam13442	67	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase,	3e-06
TIGR02603	133	TIGR02603, CxxCH_TIGR02603, putative heme-binding	3e-04
TIGR03045	159	TIGR03045, PS_II_C550, cytochrome c-550	5e-04
PRK13618	163	PRK13618, psbV, cytochrome c-550; Provisional	5e-04
COG2010	150	COG2010, CccA, Cytochrome c, mono- and diheme vari	5e-04
CHL00133	163	CHL00133, psbV, photosystem II cytochrome c550; Va	0.003
PRK13620	215	PRK13620, psbV, cytochrome c-550; Provisional	0.003

>gnl|CDD|226005 COG3474, COG3474, Cytochrome c2 [Energy production and conversion]

 Score =  147 bits (373), Expect = 2e-47
 Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 3/102 (2%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK--GITW 59
               G+K+F + C  CH+  +GG NKVGP+L+GVVGR  G   GF Y+ A K    GI W
Sbjct: 30  DAAAGEKVFKK-CQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVW 88

Query: 60  SASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
               LD +L  PKKY+PGTKM F GL+K++DR DLIAYL +L
Sbjct: 89  DEDNLDEFLTAPKKYVPGTKMAFAGLKKDQDRADLIAYLKSL 130

Length = 135

>gnl|CDD|185414 PTZ00048, PTZ00048, cytochrome c; Provisional

 Score =  138 bits (350), Expect = 3e-44
 Identities = 59/97 (60%), Positives = 69/97 (71%), Gaps = 1/97 (1%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
             + G K+F   CAQCHT N+GGA K GPNL G  GR++G +  F Y+DANKN GI WS 
Sbjct: 14  DAKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSG-SADFPYSDANKNSGIVWSD 72

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
             L  YL NPK YIPGTKMVF G++KEK+R DLIAYL
Sbjct: 73  KHLFEYLVNPKLYIPGTKMVFAGIKKEKERADLIAYL 109

Length = 115

>gnl|CDD|173596 PTZ00405, PTZ00405, cytochrome c; Provisional

 Score =  129 bits (326), Expect = 1e-40
 Identities = 54/99 (54%), Positives = 74/99 (74%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
            E G+K+F    AQCHTA +GG+N VGPNLFG+V R++G   GF Y+ AN + G+ W+  
Sbjct: 14  AERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPE 73

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            LD+YL+NPKK++PGTKM F G++K ++R D+IAYL TL
Sbjct: 74  VLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETL 112

Length = 114

>gnl|CDD|215669 pfam00034, Cytochrom_C, Cytochrome c

 Score = 47.9 bits (114), Expect = 9e-09
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 17/97 (17%)

Query: 5   NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
            GKK+F   CA CH A+  GA   GP L G        A     + A             
Sbjct: 1   KGKKLFAANCAACHGADGKGAGG-GPALAGAPAGYLLDALAAIKSGARGIGAQAV----- 54

Query: 65  DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
                     +         L  +++R  L AY+ +L
Sbjct: 55  ----------MSKAPGNATQL-TDEERAALAAYIRSL 80

The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family. Length = 81

>gnl|CDD|205620 pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 31/96 (32%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             G+ ++   CA CH     G    GP LF                      G   +  
Sbjct: 3  AAAGEALYDANCAACH-----GTGGAGPPLF----------------------GDALAPE 35

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           L   + N K  +P     F G   +++ E L AYL
Sbjct: 36 ALIKIVLNGKGAMPA----FGGDLSDEEIEALAAYL 67

Length = 67

>gnl|CDD|131652 TIGR02603, CxxCH_TIGR02603, putative heme-binding domain, Pirellula/Verrucomicrobium type

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQT 40
           E GK ++ + C  CH     G + VGP+L G VG + 
Sbjct: 3  AEKGKAVYAQRCYVCHRIGGEGVD-VGPDLTG-VGTKG 38

This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190). Length = 133

>gnl|CDD|132089 TIGR03045, PS_II_C550, cytochrome c-550

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNL 32
          V+ GK++F  AC  CH    GG  K  PN+
Sbjct: 51 VKRGKRLFNTACGTCHV---GGITKTNPNV 77

Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself [Energy metabolism, Photosynthesis]. Length = 159

>gnl|CDD|184185 PRK13618, psbV, cytochrome c-550; Provisional

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNL 32
          V+ GK++F  ACAQCH    GG  K   N+
Sbjct: 52 VKEGKRLFNYACAQCHA---GGVTKTNQNV 78

Length = 163

>gnl|CDD|224921 COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 3   VENGKKIFTRACAQCHTANEGGAN--KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWS 60
              G  +F   CA CH  N GGA     GP L G      G  P   +T  +  +G  W 
Sbjct: 51  RGAGLALFLGNCAACHGPNLGGAGPLLDGPALAG------GDPPYIVWTILHGTRG-GWG 103

Query: 61  ASTL------DIYLQNPKKYIPGTKMVFPGLR-KEKDREDLIAYLSTL 101
                     D  +     Y+    +     +  ++D   + AYL +L
Sbjct: 104 EMPAFADTLSDEQIAAVAAYV-MPDLPGMQAQLSDEDVAAIAAYLKSL 150

Length = 150

>gnl|CDD|177055 CHL00133, psbV, photosystem II cytochrome c550; Validated

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNL 32
          V+ GK++F  +C  CH    GG  K  PN+
Sbjct: 52 VKRGKRLFNASCGACHV---GGITKTNPNV 78

Length = 163

>gnl|CDD|139707 PRK13620, psbV, cytochrome c-550; Provisional

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 27/105 (25%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           V  GK++F  AC QCH    GG  K  PN+            G D            S  
Sbjct: 104 VAEGKQLFAYACGQCHV---GGITKTDPNV------------GLDPEALALATPPRDSVE 148

Query: 63  TLDIYLQNPKKYI---------PGTKM--VFPGLRKEKDREDLIA 96
           +L  YL NP  Y          P TK   +FP +R   + +DL+A
Sbjct: 149 SLVDYLHNPTTYDGEREISELHPSTKSTDIFPKMRNLTE-DDLVA 192

Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PTZ00405	114	cytochrome c; Provisional	99.97
COG3474	135	Cytochrome c2 [Energy production and conversion]	99.97
PTZ00048	115	cytochrome c; Provisional	99.96
KOG3453|consensus	110		99.77
TIGR03872	133	cytochrome_MoxG cytochrome c(L), periplasmic. This	99.73
TIGR02603	133	CxxCH_TIGR02603 putative heme-binding domain, Pire	99.67
TIGR03045	159	PS_II_C550 cytochrome c-550. Members of this prote	99.65
PF13442	67	Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type,	99.64
PF00034	91	Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cyt	99.64
PRK13618	163	psbV cytochrome c-550; Provisional	99.64
CHL00183	108	petJ cytochrome c553; Provisional	99.63
CHL00133	163	psbV photosystem II cytochrome c550; Validated	99.63
PRK13621	170	psbV cytochrome c-550; Provisional	99.62
TIGR03046	155	PS_II_psbV2 photosystem II cytochrome PsbV2. Membe	99.62
PRK13617	170	psbV cytochrome c-550; Provisional	99.62
PRK13697	111	cytochrome c6; Provisional	99.59
PRK13620	215	psbV cytochrome c-550; Provisional	99.56
COG2863	121	Cytochrome c553 [Energy production and conversion]	99.55
TIGR03874	143	4cys_cytochr c-type cytochrome, methanol metabolis	99.55
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	99.53
PRK13619	160	psbV cytochrome c-550; Provisional	99.5
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	99.47
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	99.46
PRK14487	217	cbb3-type cytochrome c oxidase subunit II; Provisi	99.44
PRK13622	180	psbV cytochrome c-550; Provisional	99.34
COG3258	293	Cytochrome c [Energy production and conversion]	99.3
COG4654	110	Cytochrome c551/c552 [Energy production and conver	99.26
PF14495	135	Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC	99.25
COG2010	150	CccA Cytochrome c, mono- and diheme variants [Ener	99.23
TIGR00781	232	ccoO cytochrome c oxidase, cbb3-type, subunit II.	99.1
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	99.07
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	98.86
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	98.39
PF02433	226	FixO: Cytochrome C oxidase, mono-heme subunit/FixO	98.26
PF09098	167	Dehyd-heme_bind: Quinohemoprotein amine dehydrogen	98.06
PRK14485	712	putative bifunctional cbb3-type cytochrome c oxida	98.03
PF06537	499	DUF1111: Protein of unknown function (DUF1111); In	97.96
PF09086	98	DUF1924: Domain of unknown function (DUF1924); Int	97.82
COG3245	126	CycB Cytochrome c5 [Energy production and conversi	97.8
COG2993	227	CcoO Cbb3-type cytochrome oxidase, cytochrome c su	97.74
PF02167	219	Cytochrom_C1: Cytochrome C1 family; InterPro: IPR0	97.67
TIGR03806	317	chp_HNE_0200 conserved hypothetical protein, HNE_0	97.44
PF10643	233	Cytochrome-c551: Photosystem P840 reaction-centre	97.25
COG1858	364	MauG Cytochrome c peroxidase [Inorganic ion transp	97.01
TIGR02162	386	torC trimethylamine-N-oxide reductase c-type cytoc	96.96
PF14376	137	Haem_bd: Haem-binding domain	96.89
COG3748	407	Predicted membrane protein [Function unknown]	96.77
KOG3052|consensus	311		96.66
PRK15032	390	trimethylamine N-oxide reductase cytochrome c-type	96.6
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	96.53
COG3258	293	Cytochrome c [Energy production and conversion]	95.86
PF03150	159	CCP_MauG: Di-haem cytochrome c peroxidase; InterPr	94.95
PF09626	120	DHC: Dihaem cytochrome c; InterPro: IPR018588 Diha	94.24
COG3488	481	Predicted thiol oxidoreductase [Energy production	94.14
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	91.89
PF07635	59	PSCyt1: Planctomycete cytochrome C; InterPro: IPR0	91.05
PF06537	499	DUF1111: Protein of unknown function (DUF1111); In	85.07
COG1858	364	MauG Cytochrome c peroxidase [Inorganic ion transp	84.78
PF09832	64	DUF2059: Uncharacterized protein conserved in bact	82.99

>PTZ00405 cytochrome c; Provisional

Probab=99.97  E-value=3e-31  Score=157.31  Aligned_cols=102  Identities=53%  Similarity=1.045  Sum_probs=95.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|+++|..+|++||.++..+.+.+||+|.++.++..++.++|.|+..+...++.|+.+.|..||.+|..+.|++.|
T Consensus        12 gd~~~G~~lF~~~C~aCH~~~~~~~~~vGP~L~gv~gR~~g~~~~~~YS~al~~~g~~wd~~~L~~~l~~P~~~~pgt~M   91 (114)
T PTZ00405         12 GDAERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFMPGTKM   91 (114)
T ss_pred             cCHHHHHHHHHhhhHhhCCCCCCCCCCcCCCccccccCccccccCccccHHHHhccCcCCHHHHHHHHHCHHhhCCCCCC
Confidence            57899999999889999998755567899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|.++.+++|+.+|++||++|+
T Consensus        92 ~f~gl~~~~dr~~liaYL~sl~  113 (114)
T PTZ00405         92 SFAGIKKPQERADVIAYLETLK  113 (114)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhc
Confidence            9999989999999999999985

>COG3474 Cytochrome c2 [Energy production and conversion]

Probab=99.97  E-value=2.4e-30  Score=153.80  Aligned_cols=100  Identities=53%  Similarity=1.058  Sum_probs=95.7

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhc--CccccHHHHHHHHhCCCCCCCCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK--GITWSASTLDIYLQNPKKYIPGT   78 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~   78 (102)
                      ||+..|+.+|++ |.+||+++.++.+.+||.|.++.+|..++.++|.|+..+...  ++.|+++.|..||++|+.+.|||
T Consensus        29 ~da~~G~~vFkk-C~~CH~i~~~g~nkvGP~L~gVvGR~ags~egf~YS~Amk~~~~g~vWd~~~L~~fL~~Pkk~vpGT  107 (135)
T COG3474          29 GDAAAGEKVFKK-CQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVWDEDNLDEFLTAPKKYVPGT  107 (135)
T ss_pred             ccHHHhHHHHHH-HHHhhccccCCCCCCCCccccccCccccccCCcccCHHHHhccCCcccCHHHHHHHHhChhhhCCCc
Confidence            588999999987 999999998888999999999999999999999999999988  89999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         79 KMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        79 ~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      .|.|.++-.++|+.+||+||+++
T Consensus       108 kM~faGlkk~~dradlIAYLk~~  130 (135)
T COG3474         108 KMAFAGLKKDQDRADLIAYLKSL  130 (135)
T ss_pred             ceeecCCCCHHHHHHHHHHHHhc
Confidence            99999998999999999999985

>PTZ00048 cytochrome c; Provisional

Probab=99.96  E-value=7.6e-29  Score=147.48  Aligned_cols=101  Identities=58%  Similarity=1.001  Sum_probs=92.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|+++|+++|++||++++.+...+||+|.++.++..+. ++|.|+..+...++.|+++.|..||.+|+...|++.|
T Consensus        13 ~~~~~G~~~f~~~C~~CH~~~~~g~~~~GP~L~Gi~gR~~g~-~~~~ys~~~~~~g~~wt~~~L~~~l~~P~~~~pgt~M   91 (115)
T PTZ00048         13 GDAKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGS-ADFPYSDANKNSGIVWSDKHLFEYLVNPKLYIPGTKM   91 (115)
T ss_pred             ccHHHHHHHHHhhhhhcCCCcCCCCCCcCCcccccccccccC-CCCccchhhhhcccccCHHHHHHHHhCcCccCCCCcc
Confidence            578899999998999999998766678999999999998887 7888888887888999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|.++.+++|+.+|++||+++.
T Consensus        92 ~~~gl~~~~~~~~liaYL~s~~  113 (115)
T PTZ00048         92 VFAGIKKEKERADLIAYLKEAS  113 (115)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhc
Confidence            9999888999999999999873

>KOG3453|consensus

Probab=99.77  E-value=2.7e-19  Score=103.49  Aligned_cols=100  Identities=64%  Similarity=1.118  Sum_probs=93.0

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|++.|+.+|.+.|+.||..+..+....+|++.++.++..+...+|.++.....-++.|.++.|..++.+|..+.||+-|
T Consensus         7 ~d~~~g~~~f~~rc~qch~~~~~~~~k~~p~l~gl~g~~~g~~~~~sy~~a~KnKgV~wgE~tl~eyLenpkkyipGtKm   86 (110)
T KOG3453|consen    7 GDVEKGKKIFPQRCAQCHTVEKGGFHKTGPNLHGLFGRQLGQAAGLSYTDANKNKGVTWGEDTLMEYLENPKKYIPGTKM   86 (110)
T ss_pred             cccccccccceeeccccccccCCcccccCCcchhhHHHhhccccCcceeecccCCceEEcchhHHHHHhCCCccccccce
Confidence            57889999999999999999877777899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy14949         81 VFPGLRKEKDREDLIAYLST  100 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~s  100 (102)
                      -|.++-...|..++++||.+
T Consensus        87 ifaGikk~~eraDlIayl~k  106 (110)
T KOG3453|consen   87 IFAGIKKKAERADLIAYLKK  106 (110)
T ss_pred             eecccCchHHHHHHHHHHHH
Confidence            99988666999999999975

>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic

Probab=99.73  E-value=2.7e-17  Score=100.00  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-   80 (102)
                      .++.|+++|..+|++||+.++.|.  .+|+|.+.......                ....+.+...+.++.    ..+| 
T Consensus        43 ~~a~G~~ly~~~CAaCHG~~g~G~--~gP~L~~~~~~~~~----------------~~~~~~l~~~i~~G~----~g~Mp  100 (133)
T TIGR03872        43 ALKKGESLFATACSGCHGHLAEGK--LGPGLNDDYWTYPK----------------NTTDKGLFETIFGGA----NGMMG  100 (133)
T ss_pred             HHHHHHHHHHHhhHHhCCCCCCCC--CCCCCcCcccccCC----------------cccHHHHHHHHHcCC----CCCCc
Confidence            357899999999999999987543  46888764321110                012344666666653    2356 


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ++...|+++||++|++||++++
T Consensus       101 ~~~~~LsdeeI~aLaaYI~sl~  122 (133)
T TIGR03872       101 PQYGNLTLDEMLQIMAWIRHLY  122 (133)
T ss_pred             ccccCCCHHHHHHHHHHHHHhC
Confidence            5777789999999999999975

This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.

>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type

Probab=99.67  E-value=3.3e-16  Score=95.40  Aligned_cols=35  Identities=37%  Similarity=0.732  Sum_probs=30.3

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVV   36 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~   36 (102)
                      ||+++|+.+|..+|++||++++.| ...||+|.++.
T Consensus         1 gd~~~G~~~f~~~C~~CH~~~g~g-~~~gP~L~~~~   35 (133)
T TIGR02603         1 GDAEKGKAVYAQRCYVCHRIGGEG-VDVGPDLTGVG   35 (133)
T ss_pred             CCHHHHHHHHHhHHHHhCCCCCCC-CccCCCccccc
Confidence            789999999998899999999754 46799998864

This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).

>TIGR03045 PS_II_C550 cytochrome c-550

Probab=99.65  E-value=6.4e-16  Score=96.09  Aligned_cols=85  Identities=19%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCC-CCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC-----
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGG-ANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY-----   74 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g-~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----   74 (102)
                      +++++|+++|+.+|++||...... .+.+++.+..+.....                ...+.+.|.+|+++|..+     
T Consensus        49 ~~~~~Gk~lF~~~Ca~CH~~G~~~~~p~vgl~l~~L~~A~~----------------~r~~v~~Lv~~iknP~~~dg~~~  112 (159)
T TIGR03045        49 EQVKRGKRLFNTACGTCHVGGITKTNPNVGLDPEALALATP----------------PRDNVEALVDYMKNPTSYDGEES  112 (159)
T ss_pred             HhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhhHHhcCC----------------CccCHHHHHHHHhCcccccccch
Confidence            367899999999999999522111 1233444433322110                012578899999999865     


Q ss_pred             --------CCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         75 --------IPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        75 --------~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                              .+...||....||++|+++|++||..+
T Consensus       113 ~~~~hp~~k~~~~mP~~~~LsdeEL~avAaYIl~q  147 (159)
T TIGR03045       113 IAELHPSIRSADIFPKMRNLTDEDLRLIAGHILVQ  147 (159)
T ss_pred             hhhcccccCcccccCCcCCCCHHHHHHHHHHHHHh
Confidence                    345677755557999999999999764

Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.

>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A

Probab=99.64  E-value=2.6e-16  Score=85.26  Aligned_cols=67  Identities=30%  Similarity=0.594  Sum_probs=49.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ++++.|+.+|.++|++||+.++     .||++.+.                      .|+.+.+..++.++..    .|.
T Consensus         1 a~~~~G~~ly~~~C~~CH~~~~-----~gp~l~~~----------------------~~~~~~l~~~i~~g~~----~Mp   49 (67)
T PF13442_consen    1 ADAAKGKALYEQNCASCHGPGG-----AGPSLAGK----------------------DWSPEELYNIIRNGRG----GMP   49 (67)
T ss_dssp             -HHHHHHHHHHHHTHHHHGTGS-----SSSTSTHH----------------------HHHHHHHHHHHHHTBT----TBS
T ss_pred             CcHHHHHHHHHhHhHHhcCCCc-----cCccchhh----------------------hhhHHHHHHHHHhCcC----CCC
Confidence            3688999999999999998332     24655431                      3356788889988773    233


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q psy14949         81 VFPGLRKEKDREDLIAYL   98 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl   98 (102)
                      ++...||++|+++|++||
T Consensus        50 ~~~~~ls~~e~~~l~~yi   67 (67)
T PF13442_consen   50 PFGGQLSDEEIEALAAYI   67 (67)
T ss_dssp             CTTTTSTHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHC
Confidence            666678999999999997

...

>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues

Probab=99.64  E-value=2.3e-18  Score=97.10  Aligned_cols=89  Identities=26%  Similarity=0.415  Sum_probs=49.0

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCC-CCCccCCcCCcCCCCCCCccchhhhhcCccccHH-HHHHHHhCCCCCCCCCcc
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKV-GPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS-TLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~-gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~m   80 (102)
                      +++|++||+.+|++||+.++.+.... +|+|.++..+.....     ...      .+... .+......+........|
T Consensus         1 a~~G~~l~~~~C~~CH~~~~~~~~~~~~p~l~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~   69 (91)
T PF00034_consen    1 AARGKELFQANCAACHGADGNGDGGGPGPDLTGIGKRYSYDW-----IGR------YITNPEAISPPAHMPDAMPMFPMM   69 (91)
T ss_dssp             HHHHHHHHHHHTTTTHBTSTTSSSSSTSHBHTTHTHHBTTHH-----THH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHhCcChhcCCCCCcCCccccCccccCccccchHHH-----HHH------HHHHHhhhccccchhhccCcccCC
Confidence            57899999879999999987654444 577877654332100     000      00001 000000000000111223


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +....||++|+++|++||++||
T Consensus        70 ~~~~~ls~~e~~~l~ayl~slk   91 (91)
T PF00034_consen   70 PMPKILSDEEIADLAAYLRSLK   91 (91)
T ss_dssp             HHHHTSSHHHHHHHHHHHHHTS
T ss_pred             cccCCCCHHHHHHHHHHHHHhC
Confidence            2222569999999999999986

The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....

>PRK13618 psbV cytochrome c-550; Provisional

Probab=99.64  E-value=1.7e-15  Score=94.45  Aligned_cols=86  Identities=26%  Similarity=0.332  Sum_probs=60.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC------
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY------   74 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------   74 (102)
                      +++++|+++|+++|++||. .  |.+..+|++.+......+..+            .+.+.+.|.+|+++|..+      
T Consensus        50 ~~~~~G~~lF~~~Ca~CH~-~--G~~~~~p~~~l~~~~La~a~p------------~rd~v~~l~~yik~P~~~Dg~~~~  114 (163)
T PRK13618         50 KQVKEGKRLFNYACAQCHA-G--GVTKTNQNVGLEPEALALATP------------NRDNIEGLVDYMKNPTTYDGEEEI  114 (163)
T ss_pred             hhHHHHHHHHHHHHHHhcC-C--CCCCCCCCcCCChhhhccCCC------------CccCHHHHHHHHhCchhccccchh
Confidence            4678999999999999994 3  346667766643221211111            012578899999999986      


Q ss_pred             -------CCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         75 -------IPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        75 -------~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                             .+...||-...|||+|+.+|++||..+
T Consensus       115 ~~~h~~ik~~~~mP~~~~Lsd~eL~ava~yll~~  148 (163)
T PRK13618        115 SEIHPSIKSADIFTAMRNLTDKDLEAIAGHILVQ  148 (163)
T ss_pred             cccccccCccccCCCCCCCCHHHHHHHHHHHHhc
Confidence                   456677755557999999999999753

>CHL00183 petJ cytochrome c553; Provisional

Probab=99.63  E-value=1.2e-15  Score=89.82  Aligned_cols=80  Identities=28%  Similarity=0.452  Sum_probs=54.0

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ++++.|+.+|..+|++||+..   .+..+|++....             +.+... ...+.+.+..+++++...||    
T Consensus        24 a~~~~G~~ly~~~Ca~CHg~g---~~~~~P~~~~~~-------------~~l~~~-~~~~~~~i~~~i~~G~~~MP----   82 (108)
T CHL00183         24 ADLDNGEQIFSANCAACHAGG---NNVIMPEKTLKK-------------DALEAN-SMNSIEAITYQVTNGKNAMP----   82 (108)
T ss_pred             ccHHHHHHHHHHHHHHHCCCC---CCCCCCCcccCH-------------HHHhhC-cCCCHHHHHHHHHcCccccc----
Confidence            367899999999999999842   344566653211             001000 11246788888988764222    


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|.+.||++|+++|++||.++
T Consensus        83 ~f~~~Ls~~ei~~i~aYi~~~  103 (108)
T CHL00183         83 AFGGRLSDEDIEDVANYVLSQ  103 (108)
T ss_pred             cccCCCCHHHHHHHHHHHHHh
Confidence            576778999999999999875

>CHL00133 psbV photosystem II cytochrome c550; Validated

Probab=99.63  E-value=1.3e-15  Score=94.85  Aligned_cols=81  Identities=20%  Similarity=0.299  Sum_probs=55.4

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCc----cCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC----
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNL----FGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK----   73 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----   73 (102)
                      ++++|+++|+.+|++||..   |.+..+|.+    ..+....                ....+.+.|.+||++|..    
T Consensus        51 ~~~~Gk~lF~~~CaaCH~~---G~~~~~p~vgl~l~~L~~A~----------------~~r~~~~~Lv~~iknP~~ydg~  111 (163)
T CHL00133         51 QVKRGKRLFNASCGACHVG---GITKTNPNVGLDPEALSLAT----------------PPRDNIEALVDYMKNPTTYDGL  111 (163)
T ss_pred             HHHHHHHHHHhhHHHhCCC---CCCCCCCCCCCCHHHHhhcC----------------CCcccHHHHHHHHhCcccccch
Confidence            5789999999999999952   233334433    3222100                012257899999999987    


Q ss_pred             ---------CCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         74 ---------YIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        74 ---------~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                               ..++..||-...||++|+.+|++||..+
T Consensus       112 ~~i~~~~~~~K~~~~MPa~~~LsdeEL~aVAaYIl~q  148 (163)
T CHL00133        112 ESIAEIHPSIKSADIFPKMRSLTDEDLYAIAGHILLQ  148 (163)
T ss_pred             HHHHHhhcccCccccCCCCCCCCHHHHHHHHHHHHhc
Confidence                     3345668644667999999999998753

>PRK13621 psbV cytochrome c-550; Provisional

Probab=99.62  E-value=9.4e-16  Score=95.48  Aligned_cols=85  Identities=24%  Similarity=0.446  Sum_probs=57.8

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC-----
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP-----   76 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----   76 (102)
                      |++.|+++|..+|++||. .  |++.+.|..+.......+..+            ..-..+.|.+|+++|+.+.+     
T Consensus        65 d~~~G~~lF~~~Ca~CH~-g--G~n~v~p~ktL~~~~L~~a~p------------~rd~I~~LV~~iknPms~kg~~~~~  129 (170)
T PRK13621         65 QLTDGKQLFDSNCLNCHV-G--GATLPNPNVSLSLKDLRGATP------------PRDNIAALVAYQRDPMSYDGSEESY  129 (170)
T ss_pred             HHHhHHHHHHHHHHHhcc-C--CCCCcCCCCCCCHHHHhcCCC------------chHHHHHHHHHhhCCCCCCcccccc
Confidence            678999999999999994 2  345555644332211111100            11245789999999999876     


Q ss_pred             CCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         77 GTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        77 ~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +..|+....||++|+.+|++||..+
T Consensus       130 ~~~mps~~~LSdeEL~aIAaYLL~q  154 (170)
T PRK13621        130 GCRQVPEDWMTDEELQNLAAFILRA  154 (170)
T ss_pred             cccCCccCCCCHHHHHHHHHHHHhh
Confidence            5556555667999999999999764

>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2

Probab=99.62  E-value=1.3e-15  Score=94.04  Aligned_cols=85  Identities=25%  Similarity=0.451  Sum_probs=56.2

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC-----
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP-----   76 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----   76 (102)
                      |+.+|+++|+.+|++||.-   |++.+.|..+..........+            .+-..+.|.+|+++|+.+.+     
T Consensus        54 d~~~G~~lF~~~Ca~CH~g---G~n~~~p~~~L~~~~L~~atp------------~Rd~I~~Lv~~iknP~s~kG~~~~~  118 (155)
T TIGR03046        54 QLTDGKNLFESNCLNCHVG---GATLPNPNVSLSLKDLKGATP------------PRDTIQSLVAYQRDPMSYDGSEESY  118 (155)
T ss_pred             HHHhHHHHHHHHHHHhccC---CCCCcCCCCCCCHHHHhcCCC------------chHHHHHHHHHhhCCcccCcccccc
Confidence            6789999999999999953   234444433222111111000            01135789999999998866     


Q ss_pred             CCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         77 GTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        77 ~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +..|+....|+++|+++|++||..+
T Consensus       119 ~~~mp~~~~LsdeEL~aIAaYLl~q  143 (155)
T TIGR03046       119 GCRPVPEDWMDDEEVENLAAFILRA  143 (155)
T ss_pred             cccCCcccCCCHHHHHHHHHHHHHh
Confidence            4456655667999999999999764

Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.

>PRK13617 psbV cytochrome c-550; Provisional

Probab=99.62  E-value=1.7e-15  Score=94.53  Aligned_cols=84  Identities=19%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             cHHhHHHHHHHhcccccCCCCCC-CCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC-----
Q psy14949          2 SVENGKKIFTRACAQCHTANEGG-ANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI-----   75 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g-~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----   75 (102)
                      ++++|+++|+.+|++||...+-. .+.+||+|..+.....                .+.+.+.|.+|+++|..+.     
T Consensus        58 ~~~~G~~~F~~~C~~CH~~g~T~~n~~vg~dL~~L~aa~p----------------~r~nv~aLv~yikdP~sydg~~s~  121 (170)
T PRK13617         58 EIKAGRKVFNTSCGTCHAGGITKTNQNVGLDPETLALATP----------------ARDNVDALVDYLKDPTSYDGEYSI  121 (170)
T ss_pred             HHHHHHHHHHcchhhhccCCCcCCCCCcCCCHHHHhccCC----------------CCCCHHHHHHHHhChHhhcchhhc
Confidence            46789999998999999654321 2457888854421110                1235789999999998766     


Q ss_pred             ----CCC----ccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         76 ----PGT----KMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        76 ----~~~----~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                          |+.    .||-...||++|+++|++||..+
T Consensus       122 ~e~~P~~~~~~imP~~~~LsdeeL~alAayLl~~  155 (170)
T PRK13617        122 ADLHPSMRSADLYPAMRDLNDEDLRLMAGYILVA  155 (170)
T ss_pred             cccCccccccccCcccCCCCHHHHHHHHHHHHhc
Confidence                553    56644446999999999999876

>PRK13697 cytochrome c6; Provisional

Probab=99.59  E-value=5.1e-15  Score=87.43  Aligned_cols=80  Identities=24%  Similarity=0.428  Sum_probs=52.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|++.|+.+|+.+|++||+.+. +....+|.+....               +...+ .++.+.+...++++...||    
T Consensus        26 ~~~~~G~~ly~~~C~~CHg~g~-~~~~~~p~l~~~~---------------~~~~~-~~~~~~l~~~i~~g~~~Mp----   84 (111)
T PRK13697         26 ADAANGEQVFSANCASCHAGGK-NLVNAGKTLKKAD---------------LEKYG-MYSLEAITAQVTNGKNAMP----   84 (111)
T ss_pred             cCHHHHHHHHHHHHHHhCCCCC-CCCCCCCCCCHHH---------------HHhcC-CCCHHHHHHHHHcCCCCCC----
Confidence            3567899999999999998532 1112244443211               00000 2346678888888753333    


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...+|++|+++|++||.++
T Consensus        85 ~~~~~ls~~di~~l~~Yi~~~  105 (111)
T PRK13697         85 AFKDRLSPDQIEDVAAYVLEQ  105 (111)
T ss_pred             CCcCCCCHHHHHHHHHHHHHH
Confidence            676778999999999999875

>PRK13620 psbV cytochrome c-550; Provisional

Probab=99.56  E-value=1.4e-14  Score=92.48  Aligned_cols=82  Identities=24%  Similarity=0.254  Sum_probs=59.9

Q ss_pred             cHHhHHHHHHHhcccccCCCCCC--CCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC---
Q psy14949          2 SVENGKKIFTRACAQCHTANEGG--ANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP---   76 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g--~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---   76 (102)
                      ++++|+++|++.|++|| +.|..  .+.++|+++.+.....                ...+.+.|..||++|..+.+   
T Consensus       103 q~~~GkqLF~~~Ca~CH-VgG~Tktnp~vgpdLt~LaaAtp----------------pRdn~e~Lv~wLkdP~sydg~~s  165 (215)
T PRK13620        103 QVAEGKQLFAYACGQCH-VGGITKTDPNVGLDPEALALATP----------------PRDSVESLVDYLHNPTTYDGERE  165 (215)
T ss_pred             HHHHHHHHHHhhhhhcc-CCCCCCCCCCCCCCHHHHhccCC----------------CCCCHHHHHHHHhCccccCCcch
Confidence            57899999999999999 44311  2355676664321110                02367899999999999887   


Q ss_pred             ----------CCccCCCCCCCHHHHHHHHHHHhh
Q psy14949         77 ----------GTKMVFPGLRKEKDREDLIAYLST  100 (102)
Q Consensus        77 ----------~~~m~~~~~ls~~e~~~l~~yl~s  100 (102)
                                +..||-...||++|+.+|+.|+.-
T Consensus       166 iae~HPs~~s~d~mP~~r~LtdedL~aIa~~IL~  199 (215)
T PRK13620        166 ISELHPSTKSTDIFPKMRNLTEDDLVAISGHILL  199 (215)
T ss_pred             hhhcCccccccccccccCCCCHHHHHHHHHHHhc
Confidence                      778875555699999999999864

>COG2863 Cytochrome c553 [Energy production and conversion]

Probab=99.55  E-value=6.1e-15  Score=87.55  Aligned_cols=78  Identities=27%  Similarity=0.386  Sum_probs=54.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC-CCCCCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK-KYIPGTK   79 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~   79 (102)
                      +|++.|+++|.+.|++||+.++.+.....|+|.++.                        .++|...++.-+ ...++..
T Consensus        22 ~~a~~G~~~~~~~Ca~CHG~~g~~~~~~~P~Lagq~------------------------~~yl~~~L~a~k~g~r~~~v   77 (121)
T COG2863          22 ADAALGKALAAQSCAACHGADGNSPAPGYPKLAGQS------------------------EAYLEKQLKAYKDGKRPGPV   77 (121)
T ss_pred             hhHHHHHHhhcchhhhccCCCCCCccCCCCCcCCCC------------------------HHHHHHHHHHHHcCCCCcch
Confidence            467899999988899999999876555567776543                        344444443222 1123345


Q ss_pred             c-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         80 M-VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        80 m-~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      | .....|||+||.+|++|+.+++
T Consensus        78 M~~~a~~LsD~Di~~lAa~~a~~~  101 (121)
T COG2863          78 MNAIASGLSDEDIADLAAYYAAQK  101 (121)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhCC
Confidence            6 4566679999999999999874

>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related

Probab=99.55  E-value=2.8e-14  Score=87.30  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=56.3

Q ss_pred             HhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC---CCcc
Q psy14949          4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP---GTKM   80 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~m   80 (102)
                      -.|+++|..+|++||+.++.|.. ..|+|.+....                    .+...|.+.|.++.....   ...|
T Consensus        34 ~~G~~lY~~~CAaCHG~dG~G~~-~~P~Lans~v~--------------------~s~~nli~vIl~G~~~~~~~~~~~M   92 (143)
T TIGR03874        34 YSGYRRYHSECHVCHGPDGMGST-YAPALKDSVKR--------------------MSYGDFLGVVANGRQNVSAAQNNVM   92 (143)
T ss_pred             ccHHHHHHHHHHHhCCCCCCCCC-CCCCCCCcccc--------------------CCHHHHHHHHHhCCCCCCCCCCCCC
Confidence            36999999999999999986543 57777532211                    146678888888775321   1346


Q ss_pred             -CCCCCCCHH-HHHHHHHHHhhc
Q psy14949         81 -VFPGLRKEK-DREDLIAYLSTL  101 (102)
Q Consensus        81 -~~~~~ls~~-e~~~l~~yl~sl  101 (102)
                       +|...|+++ ||.+|++||++.
T Consensus        93 PaF~~~LsD~~eIa~L~~YLR~~  115 (143)
T TIGR03874        93 PAFGDNPNVMCYLDDLYVYLRAR  115 (143)
T ss_pred             CCccccCCcHHHHHHHHHHHHhc
Confidence             588888886 999999999864

This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=99.53  E-value=4.9e-14  Score=95.41  Aligned_cols=79  Identities=23%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCC-CCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKV-GPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~-gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      +++|+++|.+.|++||+.++.|.... .|+|.+....+.         .         +...+.+.+++++.   +.|.+
T Consensus       203 ~~~G~~lf~~~Ca~CHG~~G~G~~~~gaP~L~~~~~~y~---------~---------~~~~i~~~i~~G~~---g~Mp~  261 (285)
T TIGR00782       203 AAKGQELFADNCTTCHGEDGKGLQELGAPNLTDDVWLYG---------G---------DLKTITTTITNGRG---GVMPA  261 (285)
T ss_pred             HHHHHHHHhccchhhCCCCCCCCCCCCCCCCCcchhhcC---------C---------CHHHHHHHHHhCCC---CCCCC
Confidence            46899999989999999997654333 488876432111         0         23456666776542   22335


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      |...||++||++|++||.+|+
T Consensus       262 ~~~~Ls~~ei~~La~Yv~sL~  282 (285)
T TIGR00782       262 WGPRLSEAQIKALAAYVHSLG  282 (285)
T ss_pred             ccccCCHHHHHHHHHHHHHhc
Confidence            777789999999999999974

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PRK13619 psbV cytochrome c-550; Provisional

Probab=99.50  E-value=7e-14  Score=85.96  Aligned_cols=85  Identities=25%  Similarity=0.362  Sum_probs=58.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC-----
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI-----   75 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----   75 (102)
                      +|+++|+++|+.+|+.||..   |++.++|++...........+            .+...+.|.+|+++|..+.     
T Consensus        49 ~d~~~GkklF~~~Ca~CH~g---G~nk~~Pnl~L~~~~L~~atP------------~RdnV~aLVdymk~PtsyDG~~~~  113 (160)
T PRK13619         49 KQITNGQRLFVQECTQCHLQ---GKTKTNNNVSLGLEDLAGAEP------------PRDNVLALVDYLKHPTSYDGEDDY  113 (160)
T ss_pred             HHHHHHHHHHHHHHHHcccC---CCCCcCCCCCcCHHHHHhcCC------------CcccHHHHHHHHhCCcccccchhh
Confidence            46889999999999999975   467778877653222211111            1235778999999999872     


Q ss_pred             ---C-----CCccCCCCCCCHHHHHHHHHHHhh
Q psy14949         76 ---P-----GTKMVFPGLRKEKDREDLIAYLST  100 (102)
Q Consensus        76 ---~-----~~~m~~~~~ls~~e~~~l~~yl~s  100 (102)
                         .     ...||-..-|+|+|+.+|++|+..
T Consensus       114 a~~hpsi~~~di~P~mr~LtdedL~~iAg~IL~  146 (160)
T PRK13619        114 SELHPNVSRPDIFPELRNFTEDDLYDVAGYMLV  146 (160)
T ss_pred             hhhcccccccccccccCCCCHHHHHHHHHHHHh
Confidence               1     123443334799999999999864

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=99.47  E-value=2.8e-13  Score=91.73  Aligned_cols=80  Identities=29%  Similarity=0.380  Sum_probs=53.9

Q ss_pred             HhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC----C-CC
Q psy14949          4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI----P-GT   78 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~-~~   78 (102)
                      +.|+++|..+|++||+.++.|. ...|+|.+.....         .         .+.+.+...++++....    . ..
T Consensus       108 ~~G~~lf~~~Ca~CHG~~g~G~-~g~P~L~~~~~~~---------g---------~~~~~i~~~i~~G~~~~~~~~~~~~  168 (285)
T TIGR00782       108 NAGAAIFRTWCAQCHGSGAGGA-KGFPNLLDNDWLW---------G---------GTLEGIHTTIKHGIRDPDDGDTYVG  168 (285)
T ss_pred             HHHHHHHHHHhHHhCCCCCCCC-CCCCCCCCCcccc---------C---------CCHHHHHHHHHhCccCcccCCcCCC
Confidence            6799999999999999987543 2237665421100         0         03556777777665311    0 23


Q ss_pred             cc-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         79 KM-VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        79 ~m-~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .| +|...||++|+++|++||++++
T Consensus       169 ~Mp~~~~~LsdeeI~aVaaYv~sl~  193 (285)
T TIGR00782       169 EMPAFGPLLEEADIKDVASYVMSLS  193 (285)
T ss_pred             CCCccccccChHHHHHHHHHHHHhc
Confidence            45 5767789999999999999863

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=99.46  E-value=3.6e-13  Score=91.38  Aligned_cols=76  Identities=20%  Similarity=0.358  Sum_probs=51.3

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-C
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-V   81 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-~   81 (102)
                      +.+|+++|+.+|++||+.++.|.  .+|.+......                   ....+.+...+.++..   +..| +
T Consensus       215 ~~~G~~ly~~~Ca~CHg~~g~G~--~gp~p~~~~~~-------------------~~~~~~~~~~I~~G~~---~~~MP~  270 (294)
T PRK14486        215 IAKGKALYDANCAACHGDEAQGQ--EGVALNDIDDG-------------------DLPDAAYFGMIKGGSD---AKGMPG  270 (294)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCC--CCCCccccccC-------------------CCcHHHHHHHHHcCCC---cCCCCc
Confidence            56899999999999999886543  34433322110                   0023345666777663   2245 5


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      |...||++|+++|++||++++
T Consensus       271 f~~~Lsdeei~~LaaYV~sl~  291 (294)
T PRK14486        271 FGGDLSDDDIWAIVAYIRSQK  291 (294)
T ss_pred             ccccCCHHHHHHHHHHHHhcc
Confidence            667689999999999999874

>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional

Probab=99.44  E-value=2.8e-13  Score=87.34  Aligned_cols=98  Identities=21%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             HhHHHHHHH-hcccccC--CCCCCCC--CCC-CCccCCc--CCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC
Q psy14949          4 ENGKKIFTR-ACAQCHT--ANEGGAN--KVG-PNLFGVV--GRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI   75 (102)
Q Consensus         4 ~~G~~lf~~-~C~~CH~--~~~~g~~--~~g-p~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   75 (102)
                      .+|+.+|.+ .|..||+  +.+-...  .-| +++.+-.  .++. .-..-...|+|.+.|.+.+.+++..+|.+|+...
T Consensus        52 l~Gr~iyi~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~P~-lwGs~RtGPDLt~vG~R~s~~w~~~hl~nP~~v~  130 (217)
T PRK14487         52 LAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSLAGESVYDHPF-LWGSKRTGPDLARVGGRYSDEWHRNHLINPRSVV  130 (217)
T ss_pred             HHHHHHHHhcChhhccCccccCCchhhhhcCcccccchhhccccc-ccCCCCCCcchhhhhccCCHHHHHHHHhCcccCC
Confidence            579999975 6999998  3321000  001 1111100  0000 0001123455666666678899999999999999


Q ss_pred             CCCccCCCCCCCHHHHH--HHHHHHhhcC
Q psy14949         76 PGTKMVFPGLRKEKDRE--DLIAYLSTLH  102 (102)
Q Consensus        76 ~~~~m~~~~~ls~~e~~--~l~~yl~sl~  102 (102)
                      |++.||-...|++++++  +|++||++|+
T Consensus       131 PgS~MPay~~L~~~~ld~~~~~~~l~~l~  159 (217)
T PRK14487        131 PESNMPAYPWLAENDLDGTDTAEKMTALR  159 (217)
T ss_pred             CCCCCCCCcccccccCCHHHHHHHHHHhh
Confidence            99999744445677766  9999999874

>PRK13622 psbV cytochrome c-550; Provisional

Probab=99.34  E-value=5.1e-12  Score=79.75  Aligned_cols=85  Identities=25%  Similarity=0.416  Sum_probs=51.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC------
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI------   75 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------   75 (102)
                      ++..|+++|..+|++||.. |  .+...|..+.......+..+.            .-+.+.|..++++|..+.      
T Consensus        61 ~~~~G~~lF~~~Ca~CH~~-G--~ni~~P~~tLk~~aL~~a~p~------------rdnv~AIv~yLk~p~tYdg~~~~~  125 (180)
T PRK13622         61 QLAKGKKLFNRACAQCHVG-G--QTYPNPDVSLKLSDLEGATPP------------RDNVLAIVDYIKNPVTYDGVESLL  125 (180)
T ss_pred             HHHHHHHHHHhhhHHhccC-C--CCCcCCCcccCHHHHcCCCCC------------cccHHHHHHHHhcccccCCccchh
Confidence            4578999999999999954 2  333334333211111100000            124567888999988544      


Q ss_pred             ---CC----CccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         76 ---PG----TKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        76 ---~~----~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                         |.    +.||-...|||+|+.+|++||..+
T Consensus       126 e~~p~~~~~~~~p~~~~LsdeEI~~VA~yIl~q  158 (180)
T PRK13622        126 EYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQ  158 (180)
T ss_pred             hccccchhccccccccCCCHHHHHHHHHHHHhC
Confidence               11    123322457999999999999764

>COG3258 Cytochrome c [Energy production and conversion]

Probab=99.30  E-value=1e-11  Score=81.87  Aligned_cols=82  Identities=26%  Similarity=0.439  Sum_probs=50.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCC--------CCCCccCCcCCcCCCCCCCccchhhhhcCc-cccHHHHHHHHhCCC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANK--------VGPNLFGVVGRQTGQAPGFDYTDANKNKGI-TWSASTLDIYLQNPK   72 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~--------~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~   72 (102)
                      |+.+|+.||.++|+.||+.+|.|...        ..|+|.+-.        .|.       .|. ..-...+..||+.-+
T Consensus       161 dp~rG~kly~eqCa~CHg~~G~G~k~~~~~~~~y~fPpLwG~d--------Sfn-------~GagMari~t~A~Fi~~nM  225 (293)
T COG3258         161 DPVRGKKLYAEQCAACHGADGQGLKNDDEQGAGYLFPPLWGPD--------SFN-------DGAGMARINTLARFIKANM  225 (293)
T ss_pred             CchhHHHHHHHHHHHhcCCCCCccccCcCCCcceecCcccCCc--------ccC-------CccchhhHHHHHHHHHhcC
Confidence            77899999999999999999765322        234444321        111       111 112245667776432


Q ss_pred             CCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         73 KYIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        73 ~~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                         |-..-....+||++|.++|++|+.++
T Consensus       226 ---P~g~~~~~P~Lsd~dA~DiAay~~~~  251 (293)
T COG3258         226 ---PYGFSGTNPILSDQDAWDIAAYVNSQ  251 (293)
T ss_pred             ---CCCcCccCCccChHHHHHHHHHHcCC
Confidence               21111122358999999999999764

>COG4654 Cytochrome c551/c552 [Energy production and conversion]

Probab=99.26  E-value=6.7e-12  Score=71.77  Aligned_cols=83  Identities=20%  Similarity=0.376  Sum_probs=58.4

Q ss_pred             CcHHhHHHHHHHh-cccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC-CCC
Q psy14949          1 MSVENGKKIFTRA-CAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI-PGT   78 (102)
Q Consensus         1 ~d~~~G~~lf~~~-C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~   78 (102)
                      +++++|+.||.++ |.+||.++   ...+||++..+...+.+..+               ....|...++++.... ...
T Consensus        21 ~~a~~~~aif~qkgC~~CHq~~---vktVGPS~kdIAakYag~~~---------------~~~kl~q~i~~g~~g~wg~i   82 (110)
T COG4654          21 ADAEDGKAIFSQKGCVACHQPD---VKTVGPSYKDIAAKYAGKAG---------------ALAKLAQGIKPGGVGVWGPI   82 (110)
T ss_pred             cchhhhHHHHHhccchhhcccc---ccccCccHHHHHHHHccchh---------------HHHHHHHhccccCcCccccC
Confidence            3678999999975 99999988   67789999988777665433               2344555555544322 235


Q ss_pred             ccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         79 KMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        79 ~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      .||....+++.+...++.||.+.
T Consensus        83 pMppqp~~sd~~a~~~~kwvl~~  105 (110)
T COG4654          83 PMPPQPAISDADAKTLAKWVLAF  105 (110)
T ss_pred             CCCCcccccchHHHHHHHHHHhc
Confidence            67766566788888888887653

>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V

Probab=99.25  E-value=1.4e-11  Score=73.65  Aligned_cols=84  Identities=26%  Similarity=0.444  Sum_probs=49.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCC---
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGT---   78 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---   78 (102)
                      ++.+|++||+..|+.||.   +|.....|+............+            .+.+.+.|.+|+++|..+..-.   
T Consensus        24 q~~~GkrLF~~~C~~CH~---GG~TktNpnV~L~le~L~~AtP------------pRDNi~~LVdYmk~PtsYDG~~~i~   88 (135)
T PF14495_consen   24 QLKRGKRLFNASCAQCHV---GGITKTNPNVSLSLEDLAGATP------------PRDNIEALVDYMKNPTSYDGEESIS   88 (135)
T ss_dssp             HHHHHHHHHHHHTHHHHG---GGCBTTSTTSBSSHHHHHTSSS--------------SSHHHHHHHHHS-B-TTSSSBGT
T ss_pred             HHHHHHHHHHHHHHhhcc---CCcccCCCCCCcCHHHHccCCC------------CcccHHHHHHHhhCCCCcCCchhHH
Confidence            467899999999999995   1234445554332211111111            1336788999999999765321   


Q ss_pred             ----------ccCCCCCCCHHHHHHHHHHHhh
Q psy14949         79 ----------KMVFPGLRKEKDREDLIAYLST  100 (102)
Q Consensus        79 ----------~m~~~~~ls~~e~~~l~~yl~s  100 (102)
                                ..|-..-|+++|+.+|++||..
T Consensus        89 e~hp~~~s~di~p~mr~ltdddL~~iAg~IL~  120 (135)
T PF14495_consen   89 ELHPSIKSADIFPKMRNLTDDDLYAIAGYILR  120 (135)
T ss_dssp             TTS-STTCTTTSGGGTS--HHHHHHHHHHHHH
T ss_pred             HhCcCcccchhhHhhcCCCHHHHHHHHHHHHh
Confidence                      1111123689999999999864

...

>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]

Probab=99.23  E-value=1.2e-11  Score=76.10  Aligned_cols=19  Identities=37%  Similarity=0.744  Sum_probs=17.4

Q ss_pred             HHhHHHHHHHhcccccCCC
Q psy14949          3 VENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~   21 (102)
                      ...|+++|..+|+.||+.+
T Consensus        51 ~~~G~~~f~~~C~~CHg~~   69 (150)
T COG2010          51 RGAGLALFLGNCAACHGPN   69 (150)
T ss_pred             HHHHHHHhcccchhccCCC
Confidence            5689999999999999988

>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II

Probab=99.10  E-value=2.4e-10  Score=74.37  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=44.2

Q ss_pred             HhHHHHHHH-hcccccC--CCCCC--CCCCC-CCccCCc--CCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC
Q psy14949          4 ENGKKIFTR-ACAQCHT--ANEGG--ANKVG-PNLFGVV--GRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI   75 (102)
Q Consensus         4 ~~G~~lf~~-~C~~CH~--~~~~g--~~~~g-p~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   75 (102)
                      .+|+.+|.+ .|..||+  +.+..  ...-| +++.+-.  .++. .-..-...|+|...|..++.+++..++.+|+...
T Consensus        51 l~Gr~iyi~eGC~~CHsQ~VR~~~~e~~ryG~~S~a~e~~yd~p~-lwGs~RtGPDLt~vG~R~s~~wh~~hl~nPr~v~  129 (232)
T TIGR00781        51 LAGRDIYIREGCYHCHSQMIRPFRAEVERYGHYSLAGESMYDHPF-QWGSKRTGPDLARVGGRYSDEWHVKHLFDPRSVV  129 (232)
T ss_pred             HHHHHHHHhcChhhcccccccCcchhhhhcCcccccchhhccccc-ccCCCCcCcCcccccccCCHHHHHHHHhCccccC
Confidence            579999975 6999997  33210  00000 1111100  0000 0000123445555566667899999999999999


Q ss_pred             CCCccC
Q psy14949         76 PGTKMV   81 (102)
Q Consensus        76 ~~~~m~   81 (102)
                      |++.||
T Consensus       130 PgSiMP  135 (232)
T TIGR00781       130 PESIMP  135 (232)
T ss_pred             CCCCCC
Confidence            999997

This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=99.07  E-value=4.6e-10  Score=76.37  Aligned_cols=75  Identities=15%  Similarity=0.278  Sum_probs=45.9

Q ss_pred             HHhHHHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCC----------CCCCCccchhhhhcCccccHHHHHHHHhCC
Q psy14949          3 VENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTG----------QAPGFDYTDANKNKGITWSASTLDIYLQNP   71 (102)
Q Consensus         3 ~~~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   71 (102)
                      ..+|+.||.+ .|..||+..-   .+....... .++...          .-..-...|.|...|..++.+++..+|.+|
T Consensus        51 ~~~G~~~y~~~gC~~CH~q~v---r~~~~~~~~-~g~~s~~~~~~~~~p~~~g~~r~GPDL~~vG~r~~~~w~~~~l~~P  126 (294)
T PRK14486         51 ELAGRDVYQREGCVNCHTQTV---RPLKSEVVR-YGQYSKAGEFAYDHPFLWGSKRTGPDLARIGGKYPDAWHYAHFEDP  126 (294)
T ss_pred             HHHHHHHHHHcCchhhcCccc---cCCcccccc-cCCCCcchhhhccccccccCCCCCCchhhhcccCCHHHHHHHHhCc
Confidence            3579999986 6999998420   000111100 000000          001112355666667777899999999999


Q ss_pred             CCCCCCCccC
Q psy14949         72 KKYIPGTKMV   81 (102)
Q Consensus        72 ~~~~~~~~m~   81 (102)
                      +...|++.||
T Consensus       127 ~~~~p~s~MP  136 (294)
T PRK14486        127 QAVVPRSNMP  136 (294)
T ss_pred             ccCCCCCCCC
Confidence            9999999886

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=98.86  E-value=1.4e-08  Score=69.15  Aligned_cols=99  Identities=24%  Similarity=0.335  Sum_probs=54.0

Q ss_pred             HHhHHHHHH--HhcccccCCCCCC---CCCCC-CC-c-cCC------------cCCcCCCCCCCccchhhhhcCccccHH
Q psy14949          3 VENGKKIFT--RACAQCHTANEGG---ANKVG-PN-L-FGV------------VGRQTGQAPGFDYTDANKNKGITWSAS   62 (102)
Q Consensus         3 ~~~G~~lf~--~~C~~CH~~~~~g---~~~~g-p~-l-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (102)
                      ..+|..||.  .+|+.||...--+   -..+| |. + .+.            ....+++..+...++++.+.|...+.+
T Consensus       159 e~~G~~LF~~k~~C~~CH~g~~ftd~~f~~iG~~~~~d~G~~~~~~~~~~~~~~~FrtPsLRnV~~taPY~HdG~~~tL~  238 (291)
T TIGR03791       159 AKRGFALFKGKAGCAACHSSWRFTDDSFHDIGLKAGLDLGRGAFAPPQVTAMQHAFKTPSLRDLPMEGPFMHDGQLGSLD  238 (291)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCcCCchHHhcCCCCccCCCcccccccccccccCcccCccccccccCCCCCCCCCcCCHH
Confidence            468999998  3699999632100   00112 11 0 011            111223333444444555677777777


Q ss_pred             HHHHHHhCCCCCCCC--CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         63 TLDIYLQNPKKYIPG--TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        63 ~l~~~~~~~~~~~~~--~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .+..+........++  ..+. .-.||++|+.+|++||++|.
T Consensus       239 evv~~y~~~g~~~~~~~~~~~-~~~Lt~~E~~dLvaFL~tLt  279 (291)
T TIGR03791       239 AVIDHYEKGGEKRPSISAEMK-PFELSEREREDLIAFIETLD  279 (291)
T ss_pred             HHHHHHHccCccccccccccc-cCCCCHHHHHHHHHHHHhcC
Confidence            777776554322221  1111 11369999999999999973

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=98.39  E-value=1.3e-06  Score=58.40  Aligned_cols=41  Identities=32%  Similarity=0.454  Sum_probs=34.0

Q ss_pred             HHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         61 ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        61 ~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      ...+..+|++|....+++.|+-...++|+++++|++||+.+
T Consensus       172 ~~~~~~~i~~p~~~k~~~~m~~~~~~tdq~~~dlvaYL~~~  212 (250)
T COG2857         172 EGELGIFIADPLKDKPGTYMPGNPALTDQEVKDLVAYLKWA  212 (250)
T ss_pred             hhhHhhhccCccccCCcCCCCCChhhHHHHHHHHHHHHHHc
Confidence            34488999999999999988744445899999999999875

>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []

Probab=98.26  E-value=5.9e-06  Score=54.06  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=46.2

Q ss_pred             HhHHHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCC----------CCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949          4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTG----------QAPGFDYTDANKNKGITWSASTLDIYLQNPK   72 (102)
Q Consensus         4 ~~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (102)
                      .+|+.+|.+ .|..||+-.-   .++...... ++++..          .-+.-...|+|...|...+.++-..-+.+|+
T Consensus        51 l~GR~iYi~eGC~~CHSQ~V---Rp~~~e~~R-yG~yS~a~e~~yd~P~lwGSkRtGPDLarvG~r~s~~Wh~~Hl~~Pr  126 (226)
T PF02433_consen   51 LAGRDIYIREGCYYCHSQMV---RPFRAEVER-YGRYSVAGEYVYDHPFLWGSKRTGPDLARVGGRYSDDWHLAHLYNPR  126 (226)
T ss_pred             HhHHHHHHHcCchhcccccC---CCchhhhhh-cCCCCchhhhhccCccccCCCCcCccHHHHhccCChHHHHHHhhChH
Confidence            479999996 5999998531   111111100 111110          0112234566666777778888888899999


Q ss_pred             CCCCCCccC
Q psy14949         73 KYIPGTKMV   81 (102)
Q Consensus        73 ~~~~~~~m~   81 (102)
                      ...|++.||
T Consensus       127 ~v~p~SiMP  135 (226)
T PF02433_consen  127 SVVPGSIMP  135 (226)
T ss_pred             hhCCCCCCC
Confidence            999999996

Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.

>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1

Probab=98.06  E-value=1.6e-06  Score=54.02  Aligned_cols=19  Identities=32%  Similarity=0.847  Sum_probs=15.1

Q ss_pred             hHHHHHHHhcccccCCCCC
Q psy14949          5 NGKKIFTRACAQCHTANEG   23 (102)
Q Consensus         5 ~G~~lf~~~C~~CH~~~~~   23 (102)
                      .|++|.+++|+.||+.+..
T Consensus         2 ~G~~Lv~~kC~~CHs~~~~   20 (167)
T PF09098_consen    2 DGEQLVQEKCAGCHSADYD   20 (167)
T ss_dssp             -HHHHHHHCHCCTC-EECT
T ss_pred             cHHHHHHHHHHHhcCcccc
Confidence            6999999999999987643

4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.

>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional

Probab=98.03  E-value=2.8e-05  Score=58.70  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             HhHHHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCC----------CCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949          4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTG----------QAPGFDYTDANKNKGITWSASTLDIYLQNPK   72 (102)
Q Consensus         4 ~~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (102)
                      .+|+.+|.+ .|..||+-.-   .+..++... .+++..          .-..-...|++...|.+.+.++-..-+.||+
T Consensus       538 ~~Gr~iyi~egC~~CHsq~v---r~~~~e~~r-~G~~s~~~e~~~d~p~~~Gs~rtgpdl~~~g~~~~~~wh~~hl~~p~  613 (712)
T PRK14485        538 LEGRDLYIREGCYNCHSQMI---RPFRSEVER-YGEYSKAGEFVYDHPFLWGSKRTGPDLAREGGKYPDSWHYNHMEDPQ  613 (712)
T ss_pred             HhhHHHHHHcCccccccccC---CCCchhHHh-cCCCCchhhhhccCCcccCCCCcCcchhhhcCCCChHHHHHHhcCch
Confidence            579999996 5999997531   111111100 111110          0111234566666777777788888889999


Q ss_pred             CCCCCCccC-C----CCCCCHHHHHHHHHHHhhc
Q psy14949         73 KYIPGTKMV-F----PGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        73 ~~~~~~~m~-~----~~~ls~~e~~~l~~yl~sl  101 (102)
                      ...|++.|| |    ...++.+++.+-+..++.+
T Consensus       614 ~~~p~s~mp~y~~l~~~~~~~~~~~~~~~~~~~~  647 (712)
T PRK14485        614 STSPGSIMPAYPWLLENELDISDTPAKIKAMQTL  647 (712)
T ss_pred             hcCCCCCCCCChhhhhCCCChHHHHHHHHHHHhc
Confidence            999999886 3    3445666666666666553

>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=97.96  E-value=2.8e-06  Score=61.35  Aligned_cols=20  Identities=45%  Similarity=0.959  Sum_probs=16.6

Q ss_pred             cHHhHHHHHHH-hcccccCCC
Q psy14949          2 SVENGKKIFTR-ACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~-~C~~CH~~~   21 (102)
                      ++.+|++||.+ .|++||...
T Consensus       362 ~v~~G~~lF~~~GCa~CH~p~  382 (499)
T PF06537_consen  362 QVLRGKQLFYQIGCASCHTPS  382 (499)
T ss_pred             HHHHHHHHHHhcCCcccCCCc
Confidence            45789999997 599999754

>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein

Probab=97.82  E-value=2.3e-05  Score=44.81  Aligned_cols=20  Identities=50%  Similarity=0.969  Sum_probs=15.0

Q ss_pred             cHHhHHHHHHH-h--------cccccCCC
Q psy14949          2 SVENGKKIFTR-A--------CAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~-~--------C~~CH~~~   21 (102)
                      ++++|+++|.. +        |++||+.+
T Consensus        10 sa~rG~~~f~~~~~~~g~~~sCasCH~~~   38 (98)
T PF09086_consen   10 SAARGEAFFTSKHTGNGKEWSCASCHTAD   38 (98)
T ss_dssp             -HHHHHHHHH--ECCTTCECSCHHHH-SS
T ss_pred             CHHHHHHHHHccCCCCCCCCCcccccCCC
Confidence            67899999974 2        99999876

It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.

>COG3245 CycB Cytochrome c5 [Energy production and conversion]

Probab=97.80  E-value=8.8e-05  Score=43.90  Aligned_cols=17  Identities=41%  Similarity=1.038  Sum_probs=14.5

Q ss_pred             hHHHHHHHhcccccCCC
Q psy14949          5 NGKKIFTRACAQCHTAN   21 (102)
Q Consensus         5 ~G~~lf~~~C~~CH~~~   21 (102)
                      .|+.+|...|..||+..
T Consensus        49 ~Gk~vy~~tC~~CHa~~   65 (126)
T COG3245          49 EGKKVYGATCQACHAAG   65 (126)
T ss_pred             ccchhHhhhhhHhccCC
Confidence            38999999999999743

>COG2993 CcoO Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]

Probab=97.74  E-value=6.4e-06  Score=52.76  Aligned_cols=53  Identities=25%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             chhhhhcCccccHHHHHHHHhCCCCCCCCCccC-CCCCCC-HHHHHHHHHHHhhc
Q psy14949         49 TDANKNKGITWSASTLDIYLQNPKKYIPGTKMV-FPGLRK-EKDREDLIAYLSTL  101 (102)
Q Consensus        49 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~-~~~~ls-~~e~~~l~~yl~sl  101 (102)
                      .|++-..|-.++.++=..-+.+|+.+.|.+.|| |..+.+ +-|++++.+=++++
T Consensus       105 GPDLaRVG~ryS~dWH~~Hl~~PR~vVPeSiMPsY~~L~~~~ld~~d~~~~~~~~  159 (227)
T COG2993         105 GPDLARVGGRYSDDWHRAHLLDPRSVVPESIMPSYPWLFDNKLDVDDIGAELKAL  159 (227)
T ss_pred             CcchhhhccccccHHHHHHccCchhcCccccCcccHHHhcCCCchHHHHHHHHhh
Confidence            344444555567777777788999999999886 443322 23566666555543

>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes

Probab=97.67  E-value=2.9e-05  Score=50.97  Aligned_cols=20  Identities=30%  Similarity=0.908  Sum_probs=17.7

Q ss_pred             cHHhHHHHHHHhcccccCCC
Q psy14949          2 SVENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (102)
                      .+.+|.++|.+.|++||+.+
T Consensus        14 slqRG~qvy~~~C~~CHsl~   33 (219)
T PF02167_consen   14 SLQRGAQVYMEVCASCHSLK   33 (219)
T ss_dssp             HHHHHHHHHHHTGGGTSBCT
T ss_pred             HHHHHHHHHHHHHhhccccc
Confidence            36789999999999999975

It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....

>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family

Probab=97.44  E-value=0.00059  Score=47.22  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             HHHHHHhCCCCCCCCCccCCCC--CCCHHHHHHHHHHHhhc
Q psy14949         63 TLDIYLQNPKKYIPGTKMVFPG--LRKEKDREDLIAYLSTL  101 (102)
Q Consensus        63 ~l~~~~~~~~~~~~~~~m~~~~--~ls~~e~~~l~~yl~sl  101 (102)
                      .|...+..   ..++.+||..+  +..++++.-|..||.+|
T Consensus       280 iL~~R~~~---~d~~~~MPp~G~~l~~~e~vaLI~~WI~~l  317 (317)
T TIGR03806       280 ILLYRMHS---TEPGVRMPELGRSLVHQEGLALIRQWIASL  317 (317)
T ss_pred             hHHHHHhc---CCccccCCcCCCCCCCHHHHHHHHHHHHhC
Confidence            35555542   22456777543  33457899999999875

The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.

>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms

Probab=97.25  E-value=7.7e-05  Score=48.25  Aligned_cols=20  Identities=35%  Similarity=0.833  Sum_probs=15.1

Q ss_pred             cHHhHHHHHHHhcccccCCC
Q psy14949          2 SVENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (102)
                      |...-+.+|+.+|..||+.+
T Consensus       168 df~AAk~L~~~KCNkCHTl~  187 (233)
T PF10643_consen  168 DFAAAKALFDRKCNKCHTLK  187 (233)
T ss_dssp             -HHHHHHHHHHHTTSSS-SH
T ss_pred             hHHHHHHHHHhhccccccHH
Confidence            34567899999999999865

The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.

>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]

Probab=97.01  E-value=0.0022  Score=45.09  Aligned_cols=18  Identities=33%  Similarity=0.875  Sum_probs=14.7

Q ss_pred             HhHHHHHH-H-hcccccCCC
Q psy14949          4 ENGKKIFT-R-ACAQCHTAN   21 (102)
Q Consensus         4 ~~G~~lf~-~-~C~~CH~~~   21 (102)
                      .+|.++|. + +|++||...
T Consensus       221 ~rGl~LF~~k~~C~aCH~g~  240 (364)
T COG1858         221 KRGLALFKGKANCAACHNGI  240 (364)
T ss_pred             HHHHHHHccCCCchhhccCc
Confidence            47999999 5 599999753

>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC

Probab=96.96  E-value=0.00076  Score=47.82  Aligned_cols=18  Identities=28%  Similarity=0.739  Sum_probs=15.4

Q ss_pred             HhHHHHHHHhcccccCCC
Q psy14949          4 ENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~   21 (102)
                      ..|+.+|..+|+.||+.-
T Consensus       322 ~~a~~ly~~~Cs~CH~~~  339 (386)
T TIGR02162       322 AYAKSMYNGACSMCHVQP  339 (386)
T ss_pred             HHHHHHHhcchhhhcCCC
Confidence            369999999999999754

This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.

>PF14376 Haem_bd: Haem-binding domain

Probab=96.89  E-value=0.0024  Score=39.08  Aligned_cols=20  Identities=10%  Similarity=0.332  Sum_probs=17.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcC
Q psy14949         83 PGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        83 ~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ...||++|+..|++|+++.+
T Consensus       118 ~a~Ls~~ek~~Ll~Wi~~~R  137 (137)
T PF14376_consen  118 EAKLSEEEKQALLNWIKEQR  137 (137)
T ss_pred             CCCCCHHHHHHHHHHHHHcC
Confidence            45679999999999998764

>COG3748 Predicted membrane protein [Function unknown]

Probab=96.77  E-value=0.0068  Score=42.09  Aligned_cols=16  Identities=19%  Similarity=0.366  Sum_probs=13.9

Q ss_pred             CCCHHHHHHHHHHHhh
Q psy14949         85 LRKEKDREDLIAYLST  100 (102)
Q Consensus        85 ~ls~~e~~~l~~yl~s  100 (102)
                      .+||||+.-|.+|+++
T Consensus       387 ~mT~eER~ll~aW~e~  402 (407)
T COG3748         387 QMTDEERALLAAWFES  402 (407)
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            3589999999999976

>KOG3052|consensus

Probab=96.66  E-value=0.00068  Score=45.32  Aligned_cols=18  Identities=28%  Similarity=0.957  Sum_probs=16.2

Q ss_pred             HHhHHHHHHHhcccccCC
Q psy14949          3 VENGKKIFTRACAQCHTA   20 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~   20 (102)
                      +.+|-++|++.|++||+.
T Consensus        95 iRRGyqVYkqVCaaCHSm  112 (311)
T KOG3052|consen   95 IRRGYQVYKQVCAACHSM  112 (311)
T ss_pred             HhhhHHHHHHHHHHhhhh
Confidence            568999999999999984

>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional

Probab=96.60  E-value=0.0019  Score=45.96  Aligned_cols=18  Identities=28%  Similarity=0.732  Sum_probs=15.3

Q ss_pred             HhHHHHHHHhcccccCCC
Q psy14949          4 ENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~   21 (102)
                      ..|+++|+.+|+.||+.-
T Consensus       319 ~ya~~ly~~~Cs~CHa~~  336 (390)
T PRK15032        319 AYADSLYNGTCNQCHGAP  336 (390)
T ss_pred             HHHHHHHhccchhhcCCC
Confidence            358999999999999754

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=96.53  E-value=0.00096  Score=45.70  Aligned_cols=20  Identities=35%  Similarity=0.745  Sum_probs=15.4

Q ss_pred             HHhHHHHHHH---------hcccccCCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTANE   22 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~~   22 (102)
                      ++-|+.||..         .|++||..+.
T Consensus         6 ~~LGk~LFfD~~LS~~~~~SCasCH~p~~   34 (291)
T TIGR03791         6 AALGKALFFDPRLSRDGSMSCATCHNPGL   34 (291)
T ss_pred             HHHHHHHhcCcccCCCCCcCchhcCCccc
Confidence            4679999952         4999998763

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

>COG3258 Cytochrome c [Energy production and conversion]

Probab=95.86  E-value=0.024  Score=38.31  Aligned_cols=14  Identities=14%  Similarity=0.411  Sum_probs=11.4

Q ss_pred             CHHHHHHHHHHHhh
Q psy14949         87 KEKDREDLIAYLST  100 (102)
Q Consensus        87 s~~e~~~l~~yl~s  100 (102)
                      +..|+++|++|++=
T Consensus       121 DspEmkAmlaY~kW  134 (293)
T COG3258         121 DSPEMKAMLAYMKW  134 (293)
T ss_pred             CCHHHHHHHHHHHH
Confidence            45799999999864

>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups

Probab=94.95  E-value=0.014  Score=36.66  Aligned_cols=19  Identities=42%  Similarity=0.899  Sum_probs=13.7

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++.|+.||..         .|++||..+
T Consensus         5 ~~LGk~LF~D~~LS~~~~~SCasCH~~~   32 (159)
T PF03150_consen    5 AALGKKLFFDPRLSGDGTVSCASCHDPE   32 (159)
T ss_dssp             HHHHHHHHT-GGGSTTSS--HHHHS-TT
T ss_pred             HHHHHHHhCCCccCCCcCcCchhhCCCc
Confidence            4679999964         499999765

Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....

>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region

Probab=94.24  E-value=0.097  Score=31.41  Aligned_cols=11  Identities=36%  Similarity=1.123  Sum_probs=7.4

Q ss_pred             HHHhcccccCC
Q psy14949         10 FTRACAQCHTA   20 (102)
Q Consensus        10 f~~~C~~CH~~   20 (102)
                      |.+.|++||-+
T Consensus         1 Y~~eCgsCH~a   11 (120)
T PF09626_consen    1 YKEECGSCHMA   11 (120)
T ss_dssp             -HHHTTSSS--
T ss_pred             CccchhhccCc
Confidence            67889999953

Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.

>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]

Probab=94.14  E-value=0.028  Score=39.43  Aligned_cols=20  Identities=45%  Similarity=0.973  Sum_probs=16.3

Q ss_pred             cHHhHHHHHHH-hcccccCCC
Q psy14949          2 SVENGKKIFTR-ACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~-~C~~CH~~~   21 (102)
                      ++..||+||.+ .|.+||...
T Consensus       350 ~vl~GkkLF~~agC~aCH~pk  370 (481)
T COG3488         350 QVLAGKKLFAQAGCVACHTPK  370 (481)
T ss_pred             hhhhhhHHHHhcCchhccCCc
Confidence            45689999987 699999753

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=91.89  E-value=0.024  Score=38.11  Aligned_cols=21  Identities=24%  Similarity=0.763  Sum_probs=17.6

Q ss_pred             cHHhHHHHHHHhcccccCCCC
Q psy14949          2 SVENGKKIFTRACAQCHTANE   22 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~   22 (102)
                      .+.+|.++|.+.|..||+...
T Consensus        42 ~lq~g~~~~~~~c~~chs~~~   62 (250)
T COG2857          42 SLQRGAQLYKEYCSACHSLKL   62 (250)
T ss_pred             HhhhceeeeecCChhhccccc
Confidence            456899999999999998763

>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c

Probab=91.05  E-value=0.13  Score=26.85  Aligned_cols=9  Identities=33%  Similarity=1.091  Sum_probs=7.5

Q ss_pred             cccccCCCC
Q psy14949         14 CAQCHTANE   22 (102)
Q Consensus        14 C~~CH~~~~   22 (102)
                      |..||+.+.
T Consensus         1 C~~CHg~~~    9 (59)
T PF07635_consen    1 CFSCHGPDK    9 (59)
T ss_pred             CcCCCCCCC
Confidence            999998764

>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=85.07  E-value=0.55  Score=34.69  Aligned_cols=17  Identities=29%  Similarity=0.882  Sum_probs=12.6

Q ss_pred             HHHH-hcccccCCCCCCC
Q psy14949          9 IFTR-ACAQCHTANEGGA   25 (102)
Q Consensus         9 lf~~-~C~~CH~~~~~g~   25 (102)
                      +|+. .|.+||--+|-|.
T Consensus        66 LfN~~SC~sCH~~dGRG~   83 (499)
T PF06537_consen   66 LFNARSCQSCHIKDGRGH   83 (499)
T ss_pred             hhhhhhHhhcccCCCCCC
Confidence            6775 5999998776443

>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]

Probab=84.78  E-value=0.54  Score=33.40  Aligned_cols=20  Identities=40%  Similarity=0.821  Sum_probs=15.6

Q ss_pred             HHhHHHHHHH---------hcccccCCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTANE   22 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~~   22 (102)
                      ++.|+.||-.         .|++||...-
T Consensus        62 ~aLGk~LffDprLS~sg~~SC~sCH~~~~   90 (364)
T COG1858          62 AALGKKLFFDPRLSASGTISCATCHNLAR   90 (364)
T ss_pred             HHHHHHhhcCcccCCCCCcCchhhcCccc
Confidence            5679999953         4999998764

>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function

Probab=82.99  E-value=1.2  Score=23.18  Aligned_cols=17  Identities=12%  Similarity=0.329  Sum_probs=13.6

Q ss_pred             CCCCHHHHHHHHHHHhh
Q psy14949         84 GLRKEKDREDLIAYLST  100 (102)
Q Consensus        84 ~~ls~~e~~~l~~yl~s  100 (102)
                      ..+|++|+.+|++|..|
T Consensus        15 ~~ft~~El~~i~~FY~S   31 (64)
T PF09832_consen   15 EHFTEEELDAILAFYES   31 (64)
T ss_dssp             HHS-HHHHHHHHHHHHS
T ss_pred             HHCCHHHHHHHHHHHCC
Confidence            34689999999999976

; PDB: 2X3O_B 3OAO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
1giw_A	104	Solution Structure Of Reduced Horse Heart Cytochrom		1e-37
1crc_A	105	Cytochrome C At Low Ionic Strength Length = 105		1e-37
2pcb_B	104	Crystal Structure Of A Complex Between Electron Tra		1e-37
2b4z_A	104	Crystal Structure Of Cytochrome C From Bovine Heart		2e-37
2aiu_A	105	Crystal Structure Of Mouse Testicular Cytochrome C		9e-37
1j3s_A	104	Solution Structure Of Reduced Recombinant Human Cyt		2e-34
1cyc_A	103	The Crystal Structure Of Bonito (Katsuo) Ferrocytoc		4e-34
3cyt_O	104	Redox Conformation Changes In Refined Tuna Cytochro		6e-34
1i54_A	103	Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins		6e-34
3nwv_A	104	Human Cytochrome C G41s Length = 104		8e-34
4dy9_A	113	Leishmania Major Peroxidase Is A Cytochrome C Perox		8e-31
1raq_A	108	The Structure And Function Of Omega Loop A Replacem		1e-30
3cxh_W	112	Structure Of Yeast Complex Iii With Isoform-2 Cytoc		1e-30
1yeb_A	108	Structure Determination And Analysis Of Yeast Iso-2		2e-30
1rap_A	108	The Structure And Function Of Omega Loop A Replacem		2e-30
2yk3_A	114	Crithidia Fasciculata Cytochrome C Length = 114		6e-30
1u74_B	108	Electron Transfer Complex Between Cytochrome C And		8e-30
1nmi_A	108	Solution Structure Of The Imidazole Complex Of Iso-		8e-30
2pcc_B	108	Crystal Structure Of A Complex Between Electron Tra		1e-29
1s6v_B	108	Structure Of A Cytochrome C Peroxidase-Cytochrome C		1e-29
2jti_B	108	Solution Structure Of The Yeast Iso-1-Cytochrome C		1e-29
1ytc_A	112	Thermodynamic Cycles As Probes Of Structure-Functio		1e-29
2b12_B	108	Crystal Structure Of The Protein-Protein Complex Be		2e-29
1yic_A	108	The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochr		3e-29
2ycc_A	108	Oxidation State-Dependent Conformational Changes In		3e-29
2jqr_A	108	Solution Model Of Crosslinked Complex Of Cytochrome		3e-29
1yfc_A	108	Solution Nmr Structure Of A Yeast Iso-1-Ferrocytoch		3e-29
1kyo_W	108	Yeast Cytochrome Bc1 Complex With Bound Substrate C		4e-29
2b11_B	108	Crystal Structure Of The Protein-Protein Complex Be		4e-29
2b0z_B	108	Crystal Structure Of The Protein-Protein Complex Be		5e-29
1csw_A	108	Replacements In A Conserved Leucine Cluster In The		5e-29
1fhb_A	108	Three-Dimensional Solution Structure Of The Cyanide		6e-29
1irv_A	108	Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75		7e-29
1chh_A	108	Structural Studies Of The Roles Of Residues 82 And		8e-29
1cty_A	108	Mutation Of Tyrosine-67 In Cytochrome C Significant		9e-29
2b10_B	108	Crystal Structure Of The Protein-Protein Complex Be		9e-29
1csv_A	108	Replacements In A Conserved Leucine Cluster In The		1e-28
1lms_A	108	Structural Model For An Alkaline Form Of Ferricytoc		1e-28
1ccr_A	112	Structure Of Rice Ferricytochrome C At 2.0 Angstrom		1e-28
1csu_A	108	Replacements In A Conserved Leucine Cluster In The		2e-28
1chj_A	108	Structural Studies Of The Roles Of Residues 82 And		2e-28
1csx_A	108	Replacements In A Conserved Leucine Cluster In The		2e-28
1irw_A	108	Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52		2e-28
2lir_A	108	Nmr Solution Structure Of Yeast Iso-1-Cytochrome C		3e-28
1crg_A	108	The Role Of A Conserved Internal Water Molecule And		3e-28
1chi_A	108	Structural Studies Of The Roles Of Residues 82 And		3e-28
1crh_A	108	The Role Of A Conserved Internal Water Molecule And		4e-28
1cri_A	108	The Role Of A Conserved Internal Water Molecule And		9e-28
1cif_A	108	Structural And Functional Effects Of Multiple Mutat		2e-27
1cig_A	108	Structural And Functional Effects Of Multiple Mutat		2e-27
1cie_A	108	Structural And Functional Effects Of Multiple Mutat		3e-27
1cih_A	108	Structural And Functional Effects Of Multiple Mutat		2e-26
1hro_A	106	Molecular Structure Of A High Potential Cytochrome		1e-23
1co6_A	107	Crystal Structure Of Ferrocytochrome C2 From Rhodop		2e-22
1qn2_A	100	Cytochrome Ch From Methylobacterium Extorquens Leng		1e-17
3m97_X	140	Structure Of The Soluble Domain Of Cytochrome C552		7e-17
1c7m_A	100	Solution Structure Of The Functional Domain Of Para		1e-16
1ql3_A	99	Structure Of The Soluble Domain Of Cytochrome C552		1e-16
2c2c_A	112	Refinement Of The Crystal Structure Of Oxidized Rho		2e-15
1hh7_A	114	Refined Crystal Structure Of Cytochrome C2 From Rho		9e-13
1jdl_A	121	Structure Of Cytochrome C2 From Rhodospirillum Cent		8e-12
2bgv_X	134	X-Ray Structure Of Ferric Cytochrome C-550 From Par		1e-08
155c_A	135	The Structure Of Paracoccus Denitrificans Cytochrom		2e-08
1cot_A	129	X-Ray Structure Of The Cytochrome C2 Isolated From		3e-08
2bh4_X	134	X-Ray Structure Of The M100k Variant Of Ferric Cyt		9e-08
2cxb_A	124	Crystallization And X-Ray Structure Determination O		1e-07
1vyd_A	116	Crystal Structure Of Cytochrome C2 Mutant G95e Leng		2e-07
1c2n_A	137	Cytochrome C2, Nmr, 20 Structures Length = 137		4e-07
1c2r_A	116	Molecular Structure Of Cytochrome C2 Isolated From		4e-07
2yev_B	337	Structure Of Caa3-Type Cytochrome Oxidase Length =		4e-04

>pdb|1GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C, Nmr, Minimized Average Structure Length = 104

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 79/98 (80%)
Query: 2  SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW  
Sbjct: 2  DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 61
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
           TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL 
Sbjct: 62 ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLK 99

>pdb|1CRC|A Chain A, Cytochrome C At Low Ionic Strength Length = 105

Iteration: 1
 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 79/98 (80%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW  
Sbjct: 3   DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 62
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
            TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL 
Sbjct: 63  ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLK 100

>pdb|2PCB|B Chain B, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 104

Iteration: 1
 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 79/98 (80%)
Query: 2  SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW  
Sbjct: 2  DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 61
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
           TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL 
Sbjct: 62 ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLK 99

>pdb|2B4Z|A Chain A, Crystal Structure Of Cytochrome C From Bovine Heart At 1.5 A Resolution. Length = 104

Iteration: 1
 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 79/96 (82%)
Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF + CAQCHT  +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW   
Sbjct: 3  VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 63 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 98

>pdb|2AIU|A Chain A, Crystal Structure Of Mouse Testicular Cytochrome C At 1.6 Angstrom Length = 105

Iteration: 1
 Score =  148 bits (373), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 78/96 (81%)
Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           E GKKIF + CAQCHT  +GG +K GPNL+G+ GR+TGQAPGF YTDANKNKG+ WS  
Sbjct: 4  AEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEE 63
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+ +REDLI YL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYL 99

>pdb|1J3S|A Chain A, Solution Structure Of Reduced Recombinant Human Cytochrome C Length = 104

Iteration: 1
 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 76/96 (79%)
Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF   C+QCHT  +GG +K GPNL G+ GR+TGQAPG+ YT ANKNKGI W   
Sbjct: 3  VEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGED 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+++R DLIAYL
Sbjct: 63 TLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYL 98

>pdb|1CYC|A Chain A, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C At 2.3 Angstroms Resolution. Ii. Structure And Function Length = 103

Iteration: 1
 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 79/98 (80%)
Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           V  GKK F + CAQCHT   GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+ +
Sbjct: 3   VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNEN 62
Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TL  YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 63  TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 100

>pdb|3CYT|O Chain O, Redox Conformation Changes In Refined Tuna Cytochrome C Length = 104

Iteration: 1
 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 78/98 (79%)
Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           V  GKK F + CAQCHT   GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+  
Sbjct: 4   VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNND 63
Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TL  YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 64  TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 101

>pdb|1I54|A Chain A, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins Length = 103

Iteration: 1
 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 78/98 (79%)
Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           V  GKK F + CAQCHT   GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+  
Sbjct: 3   VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNND 62
Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           TL  YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 63  TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 100

>pdb|3NWV|A Chain A, Human Cytochrome C G41s Length = 104

Iteration: 1
 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 75/96 (78%)
Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          VE GKKIF   C+QCHT  +GG +K GPNL G+ GR+T QAPG+ YT ANKNKGI W   
Sbjct: 3  VEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTSQAPGYSYTAANKNKGIIWGED 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          TL  YL+NPKKYIPGTKM+F G++K+++R DLIAYL
Sbjct: 63 TLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYL 98

>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase Length = 113

Iteration: 1
 Score =  128 bits (322), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 74/99 (74%)
Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           VE G+K+F    AQCHTA +GG+N VGPNLFG+V R +G+  GF Y+ AN   G+ W+  
Sbjct: 14  VERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSKANAESGVIWTPE 73
Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            LD+YL+NPKK++PGTKM F G++K ++R D+IAYL TL
Sbjct: 74  VLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETL 112

>pdb|1RAQ|A Chain A, The Structure And Function Of Omega Loop A Replacements In Cytochrome C Length = 108

Iteration: 1
 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT ++GGANKVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|3CXH|W Chain W, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C Bound And Definition Of A Minimal Core Interface For Electron Transfer. Length = 112

Iteration: 1
 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 67/98 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  EGG NKVGPNL G+ GR +GQ  G+ YTDAN NK + W  
Sbjct: 11  SAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDE 70
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
            ++  YL NP KYIPGTKM F GL+KEKDR DLI Y++
Sbjct: 71  DSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYMT 108

>pdb|1YEB|A Chain A, Structure Determination And Analysis Of Yeast Iso-2- Cytochrome C And A Composite Mutant Protein Length = 108

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  EGG NKVGPNL G+ GR +GQ  G+ YTDAN NK + W  
Sbjct: 7   SAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
            ++  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  DSMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1RAP|A Chain A, The Structure And Function Of Omega Loop A Replacements In Cytochrome C Length = 108

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT ++GGANKVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTFDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C Length = 114

Iteration: 1
 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 72/96 (75%)
Query: 6   GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
           G+K+F    AQCHTAN+GGAN VGPNL+G+VGR +G   G+ Y+ AN   G+ W+   LD
Sbjct: 17  GEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLD 76
Query: 66  IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
           +YL+NP K++PGTKM F G++K ++R D+IAYL TL
Sbjct: 77  VYLENPXKFMPGTKMSFAGMKKPQERADVIAYLETL 112

>pdb|1U74|B Chain B, Electron Transfer Complex Between Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  125 bits (313), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1NMI|A Chain A, Solution Structure Of The Imidazole Complex Of Iso-1 Cytochrome C Length = 108

Iteration: 1
 Score =  125 bits (313), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|2PCC|B Chain B, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 108

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1S6V|B Chain B, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 108

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMCFGGLKKEKDRNDLITYL 103

>pdb|2JTI|B Chain B, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a) : Yeast Cytochrome C Peroxidase Complex Length = 108

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKARCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1YTC|A Chain A, Thermodynamic Cycles As Probes Of Structure-Function Relationships In Unfolded Proteins Length = 112

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 66/98 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  EGG NKVGPNL G+ GR +GQ  G+ YTDA  NK + W  
Sbjct: 11  SAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDAIINKNVKWDE 70
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
            ++  YL NP KYIPGTKM F GL+KEKDR DLI Y++
Sbjct: 71  DSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYMT 108

>pdb|2B12|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82y Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 67/97 (69%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM + GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAYGGLKKEKDRNDLITYL 103

>pdb|1YIC|A Chain A, The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C, Nmr, 20 Structures Length = 108

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|2YCC|A Chain A, Oxidation State-Dependent Conformational Changes In Cytochrome C Length = 108

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|2JQR|A Chain A, Solution Model Of Crosslinked Complex Of Cytochrome C And Adrenodoxin Length = 108

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +K GPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKCGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1YFC|A Chain A, Solution Nmr Structure Of A Yeast Iso-1-Ferrocytochrome C Length = 108

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1KYO|W Chain W, Yeast Cytochrome Bc1 Complex With Bound Substrate Cytochrome C Length = 108

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|2B11|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82w Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 67/97 (69%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM + GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAWGGLKKEKDRNDLITYL 103

>pdb|2B0Z|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82i Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM   GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAIGGLKKEKDRNDLITYL 103

>pdb|1CSW|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F G++KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGMKKEKDRNDLITYL 103

>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide Adduct Of A Met80ala Variant Of Saccharomyces Cerevisiae Iso-1- Cytochrome C. Identification Of Ligand-Residue Interactions In The Distal Heme Cavity Length = 108

Iteration: 1
 Score =  122 bits (305), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GRQ+GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTK  F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKAAFGGLKKEKDRNDLITYL 103

>pdb|1IRV|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75 Replaced By Met And Cys 102 Replaced By Thr Length = 108

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KY+PGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYMPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1CHH|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  121 bits (304), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM + GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAYGGLKKEKDRNDLITYL 103

>pdb|1CTY|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly Alters The Local Heme Environment Length = 108

Iteration: 1
 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  +L NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|2B10|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82s Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NPKKYIPGTKM   GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPKKYIPGTKMASGGLKKEKDRNDLITYL 103

>pdb|1CSV|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F G +KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGFKKEKDRNDLITYL 103

>pdb|1LMS|A Chain A, Structural Model For An Alkaline Form Of Ferricytochrome C Length = 108

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGT M F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPAKYIPGTAMAFGGLKKEKDRNDLITYL 103

>pdb|1CCR|A Chain A, Structure Of Rice Ferricytochrome C At 2.0 Angstroms Resolution Length = 112

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 68/93 (73%)
Query: 6   GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
           G+KIF   CAQCHT ++G  +K GPNL G+ GRQ+G  PG+ Y+ A+KN  + W  +TL 
Sbjct: 15  GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLY 74
Query: 66  IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
            YL NP KYIPGTKMVFPGL K ++R DLI+YL
Sbjct: 75  DYLLNPXKYIPGTKMVFPGLXKPQERADLISYL 107

>pdb|1CSU|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F G +KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGCKKEKDRNDLITYL 103

>pdb|1CHJ|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F G +KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGAKKEKDRNDLITYL 103

>pdb|1CSX|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR D I YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDSITYL 103

>pdb|1IRW|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52 Replaced By Ala And Cys 102 Replaced By Thr Length = 108

Iteration: 1
 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDA   K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAAIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|2LIR|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant P71h In Oxidized States Length = 108

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL N  KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNHAKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1CRG|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDA   K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1CHI|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM + G +KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAYGGAKKEKDRNDLITYL 103

>pdb|1CRH|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDA   K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1CRI|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  118 bits (295), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 65/97 (67%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDA   K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  +L NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 64/97 (65%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ G  +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM   GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYL 103

>pdb|1CIG|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 64/97 (65%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ G  +GQA G+ YTDA   K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103

>pdb|1CIE|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 64/97 (65%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDA   K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM   GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYL 103

>pdb|1CIH|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 63/97 (64%)
Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ G  +GQA G+ YTDA   K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           + +  YL NP KYIPGTKM   GL+KEKDR DLI YL
Sbjct: 67  NNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYL 103

>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2 Isolated From Rhodopila Globiformis Length = 106

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 5   NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
            GK +F   C  CHT +  GANKVGP+L+GVVGR +G  PG++Y++AN   GI W+   L
Sbjct: 10  EGKHLFHTICITCHT-DIKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVL 68
Query: 65  DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
             Y+++P+K +PGTKM +PG    + R D+IAYL TL
Sbjct: 69  FKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLETL 105

>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From Rhodopseudomonas Viridis Length = 107

Iteration: 1
 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 5   NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
           +G+++F + C  CH+   G  NKVGP L G+ GR +G   GF Y+DANKN GITW+    
Sbjct: 5   SGEQVF-KQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVF 63
Query: 65  DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
             Y+++PK  IPGTKM+F G++ E+   DLIAY+   +
Sbjct: 64  REYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFN 101

>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens Length = 100

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 6   GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWSASTL 64
           G+K F   C  CH   + G   VGP L GVVG + G+ A G+ ++DA K  G+TW  + L
Sbjct: 7   GEKAFA-PCKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADL 62
Query: 65  DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
             +L +PKK +PGTKMVFPG+   K  +D+IAYL T
Sbjct: 63  KQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKT 98

>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With Its Flexible Linker Segment From Paracoccus Denitrificans Length = 140

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 6   GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
           G+K+F + C  CH  +  G + VGP+L GVVGR      GF+Y+D  K  G  W+   L 
Sbjct: 47  GEKVFGK-CKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQ 103
Query: 66  IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
            +L NPK  + GTKM F GL K +DR +LIAYL 
Sbjct: 104 EFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 137

>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus Denitrificans Cytochrome C552 In The Reduced State Length = 100

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 6  GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
          G+K+F + C  CH  +  G + VGP+L GVVGR      GF+Y+D  K  G  W+   L 
Sbjct: 7  GEKVFGK-CKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQ 63
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
           +L NPK  + GTKM F GL K +DR +LIAYL 
Sbjct: 64 EFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 97

>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From Paracoccus Denitrificans In The Reduced State Length = 99

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 6  GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
          G+K+F + C  CH  +  G + VGP+L GVVGR      GF+Y+D  K  G  W+   L 
Sbjct: 6  GEKVFGK-CKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQ 62
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
           +L NPK  + GTKM F GL K +DR +LIAYL 
Sbjct: 63 EFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 96

>pdb|2C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized Rhodospirillum Rubrum Cytochrome C2 Length = 112

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 13/107 (12%)
Query: 6   GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDA---NKNKGITWSAS 62
           G+K+ ++ C  CHT ++GGANKVGPNLFGV          + Y+++    K KG+TW+ +
Sbjct: 7   GEKV-SKKCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEA 65
Query: 63  TLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
            L  Y++NPK ++          +KM F  L K+ + E++IAYL TL
Sbjct: 66  NLAAYVKNPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLKTL 111

>pdb|1HH7|A Chain A, Refined Crystal Structure Of Cytochrome C2 From Rhodopseudomonas Palustris At 1.4 Angstrom Resolution Length = 114

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 22/113 (19%)
Query: 6   GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK---GITWSAS 62
           G+ +F + C  CH A++   N VGP L GVVGR+ G A GF Y+  N N    G+ W+A 
Sbjct: 6   GEAVF-KQCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTAD 61
Query: 63  TLDIYLQNPKKYIPG--------------TKMVFPGLRKEKDREDLIAYLSTL 101
            +  YL +P  ++                TKM F  L  E+ R+D++AYL+TL
Sbjct: 62  NIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLATL 113

>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum Length = 121

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 6   GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSAS 62
           G+ +F + C  CH       N VGP L GV+ RQ G APGF+Y+  N      G+ W+  
Sbjct: 8   GEAVFKK-CMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPE 66
Query: 63  TLDIYLQNPKKYIP--------------GTKMVFPGLRKEKDREDLIAYLSTL 101
            +  YL +P  ++                TKMVF  L  E++R+D++AYL   
Sbjct: 67  NIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQF 118

>pdb|2BGV|X Chain X, X-Ray Structure Of Ferric Cytochrome C-550 From Paracoccus Versutus Length = 134

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 27/115 (23%)
Query: 6   GKKIFTRACAQCHTAN--------EGGANKVGPNLFGVVGRQTGQAPGFDYTD-----AN 52
           G+K F + C  CH           +GG  K GPNL+GVVGR+     GF Y D     A 
Sbjct: 8   GEKEFNK-CKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAE 64
Query: 53  KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
           KN  + WS + L  Y+ +PK ++          TKM F   +  K++ D++A+L+
Sbjct: 65  KNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKMTF---KLGKNQADVVAFLA 116

>pdb|155C|A Chain A, The Structure Of Paracoccus Denitrificans Cytochrome C550 Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 26/114 (22%)
Query: 6   GKKIFTRACAQCH-------TANEGGANKVGPNLFGVVGRQTGQAPGFDYTD-----ANK 53
           G+K F + C  CH       T  +GG  K GPNL+GVVGR+     GF Y +     A K
Sbjct: 9   GEKEFNK-CKACHMIQAPDGTDIKGG--KTGPNLYGVVGRKIASEEGFKYGEGILEVAEK 65
Query: 54  NKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
           N  +TW+ + L  Y+ +PK  +          TKM F   +  K++ D++A+L+
Sbjct: 66  NPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLA 116

>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From Paracoccus Denitrificans Refined To 1.7 Angstroms Resolution Length = 129

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 6   GKKIFTRACAQCHT--ANEG----GANKVGPNLFGVVGRQTGQAPGFDYTD-----ANKN 54
           G+K F + C  CH   A +G       K GPNL+GVVGR+     GF Y +     A KN
Sbjct: 8   GEKEFNK-CKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKN 66
Query: 55  KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
             +TW+ + L  Y+ +PK ++          TKM F   +  K++ D++A+L+
Sbjct: 67  PDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLA 116

>pdb|2BH4|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550 From Paracoccus Versutus Determined At 100 K. Length = 134

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 27/115 (23%)
Query: 6   GKKIFTRACAQCHTAN--------EGGANKVGPNLFGVVGRQTGQAPGFDYTD-----AN 52
           G+K F + C  CH           +GG  K GPNL+GVVGR+     GF Y D     A 
Sbjct: 8   GEKEFNK-CKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAE 64
Query: 53  KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
           KN  + WS + L  Y+ +PK ++          TK  F   +  K++ D++A+L+
Sbjct: 65  KNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTF---KLGKNQADVVAFLA 116

>pdb|2CXB|A Chain A, Crystallization And X-Ray Structure Determination Of Cytochrome C2 From Rhodobacter Sphaeroides In Three Crystal Forms Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 4   ENGKKIFTRACAQCH-------TANEGGANKVGPNLFGVVGRQTGQAPGFD-YTDANKN- 54
           E G K F + C  CH       T   G   K GPNL+GVVGR  G    F  Y +  K  
Sbjct: 6   EAGAKAFNQ-CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEA 64
Query: 55  --KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
             KG+ W       Y+Q+P K++           KM F  L+KE D  ++ AYL  +
Sbjct: 65  GAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQV 120

>pdb|1VYD|A Chain A, Crystal Structure Of Cytochrome C2 Mutant G95e Length = 116

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 23/115 (20%)
Query: 5   NGKKIFTRACAQCHT--ANEG-----GANKVGPNLFGVVGRQTGQAPGFDYTD---ANKN 54
            G+K F + C  CH+  A +G     GA K GPNL+GVVGR  G  P F Y D   A   
Sbjct: 5   KGEKEFNK-CKTCHSIIAPDGTEIVKGA-KTGPNLYGVVGRTAGTYPEFKYKDSIVALGA 62
Query: 55  KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
            G  W+   +  Y+++P  ++          T+M F   +  K  ED+ AYL+++
Sbjct: 63  SGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAF---KLAKGGEDVAAYLASV 114

>pdb|1C2N|A Chain A, Cytochrome C2, Nmr, 20 Structures Length = 137

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 5   NGKKIFTRACAQCHT--ANEGG----ANKVGPNLFGVVGRQTGQAPGFDYTD---ANKNK 55
            G+K F + C  CH+  A +G       K GPNL+GVVGR  G  P F Y D   A    
Sbjct: 26  KGEKEFNK-CKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGAS 84
Query: 56  GITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
           G  W+   +  Y+++P  ++          T M F   +  K  ED+ AYL+++
Sbjct: 85  GFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAF---KLAKGGEDVAAYLASV 135

>pdb|1C2R|A Chain A, Molecular Structure Of Cytochrome C2 Isolated From Rhodobacter Capsulatus Determined At 2.5 Angstroms Resolution Length = 116

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 23/115 (20%)
Query: 5   NGKKIFTRACAQCHT--ANEG-----GANKVGPNLFGVVGRQTGQAPGFDYTD---ANKN 54
            G+K F + C  CH+  A +G     GA K GPNL+GVVGR  G  P F Y D   A   
Sbjct: 5   KGEKEFNK-CKTCHSIIAPDGTEIVKGA-KTGPNLYGVVGRTAGTYPEFKYKDSIVALGA 62
Query: 55  KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
            G  W+   +  Y+++P  ++          T M F   +  K  ED+ AYL+++
Sbjct: 63  SGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAF---KLAKGGEDVAAYLASV 114

>pdb|2YEV|B Chain B, Structure Of Caa3-Type Cytochrome Oxidase Length = 337

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 4   ENGKKIFTRACAQCH-TANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           E G+++F + CA CH  A       +GP L G+ G +T    G           +  +  
Sbjct: 237 ERGQQVFQQNCAACHGVARSMPPAVIGPEL-GLWGNRTSLGAGI----------VENTPE 285
Query: 63  TLDIYLQNPKKYIPGTKMV-FPGLRKEKDREDLIAYLSTL 101
            L  ++++P    PG KM  FP L  E+D + L+ YL  L
Sbjct: 286 NLKAWIRDPAGMKPGVKMPGFPQL-SEEDLDALVRYLEGL 324

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	7e-62
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	1e-61
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	4e-61
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	7e-61
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	8e-60
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	2e-59
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	3e-58
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	5e-54
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	2e-52
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	4e-51
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	2e-48
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	2e-48
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	2e-47
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	4e-47
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	2e-46
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	2e-45
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	2e-21
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	7e-15
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	5e-13
3cp5_A	124	Cytochrome C; electron transfer protein, electron	6e-13
1e29_A	135	Cytochrome C549; electron transport, PSII associat	4e-11
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	7e-11
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	1e-10
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	3e-10
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	3e-09
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	4e-09
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	4e-08
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	6e-08
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	6e-07
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	1e-06
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	4e-05
2d0w_A	170	Cytochrome CL; electron transfer, electron transpo	1e-04
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	1e-04
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	1e-04
1gdv_A	85	Cytochrome C6; RED ALGA, electron transport; HET:	1e-04
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	2e-04
1kx2_A	81	Mono-heme C-type cytochrome SCYA; HAEM protein, fe	2e-04
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	2e-04
1cc5_A	83	Cytochrome C5; electron transport (heme protein);	2e-04
1c6r_A	89	Cytochrome C6; electron transport protein, reduced	2e-04
1wve_C	80	4-cresol dehydrogenase [hydroxylating] cytochrome	3e-04
2exv_A	82	Cytochrome C-551; alpha helix, heme C, electron tr	3e-04
2c8s_A	172	Cytochrome C-L; HAEM, heme, electron transport, me	4e-04
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	5e-04
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	9e-04
1cch_A	82	Cytochrome C551; electron transport; HET: HEM; NMR	9e-04

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ... Length = 103

 Score =  182 bits (464), Expect = 7e-62
 Identities = 61/99 (61%), Positives = 78/99 (78%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            V  GKK F + CAQCHT   GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+ 
Sbjct: 2   DVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNN 61

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
            TL  YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 62  DTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 100

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1 Length = 106

 Score =  181 bits (463), Expect = 1e-61
 Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
               GK +F   C  CHT    GANKVGP+L+GVVGR +G  PG++Y++AN   GI W+ 
Sbjct: 7   DPVEGKHLFHTICITCHTD-IKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTP 65

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
             L  Y+++P+K +PGTKM +PG    + R D+IAYL TL
Sbjct: 66  DVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLETL 105

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A* Length = 107

 Score =  180 bits (458), Expect = 7e-61
 Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             +G+++F + C  CH+   G  NKVGP L G+ GR +G   GF Y+DANKN GITW+  
Sbjct: 3   AASGEQVFKQ-CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEE 61

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
               Y+++PK  IPGTKM+F G++ E+   DLIAY+   
Sbjct: 62  VFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQF 100

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ... Length = 108

 Score =  177 bits (451), Expect = 8e-60
 Identities = 55/100 (55%), Positives = 66/100 (66%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
           + +  YL NP KYIPGTKM F GL+KEKDR DLI YL   
Sbjct: 67  NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1 Length = 112

 Score =  176 bits (448), Expect = 2e-59
 Identities = 54/97 (55%), Positives = 70/97 (72%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           + + G+KIF   CAQCHT ++G  +K GPNL G+ GRQ+G  PG+ Y+ A+KN  + W  
Sbjct: 11  NPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEE 70

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           +TL  YL NP KYIPGTKMVFPGL K ++R DLI+YL
Sbjct: 71  NTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLISYL 107

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A* Length = 140

 Score =  174 bits (443), Expect = 3e-58
 Identities = 43/100 (43%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
               G+K+F + C  CH     G + VGP+L GVVGR      GF+Y+D  K  G  W+ 
Sbjct: 43  DPAAGEKVFGK-CKACHKL--DGNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 99

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
             L  +L NPK  + GTKM F GL K +DR +LIAYL   
Sbjct: 100 EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQ 139

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1 Length = 100

 Score =  162 bits (413), Expect = 5e-54
 Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWS 60
               G+K F   C  CH   + G   VGP L GVVG + G+ A G+ ++DA K  G+TW 
Sbjct: 3   DAAAGEKAF-APCKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWD 58

Query: 61  ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            + L  +L +PKK +PGTKMVFPG+   K  +D+IAYL T 
Sbjct: 59  QADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKTK 99

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A* Length = 112

 Score =  159 bits (403), Expect = 2e-52
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 13/111 (11%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDAN---KNKGIT 58
               G+K+  + C  CHT ++GGANKVGPNLFGV          + Y+++    K KG+T
Sbjct: 3   DAAAGEKVSKK-CLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLT 61

Query: 59  WSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
           W+ + L  Y++NPK ++          +KM F  L K+ + E++IAYL TL
Sbjct: 62  WTEANLAAYVKNPKAFVLEKSGDPKAKSKMTF-KLTKDDEIENVIAYLKTL 111

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1 Length = 121

 Score =  156 bits (395), Expect = 4e-51
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 19/117 (16%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGIT 58
               G+ +F + C  CH       N VGP L GV+ RQ G APGF+Y+  N      G+ 
Sbjct: 4   DPAKGEAVFKK-CMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLH 62

Query: 59  WSASTLDIYLQNPKKYIP--------------GTKMVFPGLRKEKDREDLIAYLSTL 101
           W+   +  YL +P  ++                TKMVF  L  E++R+D++AYL   
Sbjct: 63  WTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQF 118

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1 Length = 135

 Score =  149 bits (379), Expect = 2e-48
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 22/118 (18%)

Query: 2   SVENGKKIFTRACAQCHTANEGGA-----NKVGPNLFGVVGRQTGQAPGFDYTDA----- 51
               G+K F + C  CH             K GPNL+GVVGR+     GF Y +      
Sbjct: 5   DAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVA 63

Query: 52  NKNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
            KN  +TW+ + L  Y+ +PK  +          TKM F   +  K++ D++A+L+  
Sbjct: 64  EKNPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQD 118

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A* Length = 114

 Score =  148 bits (376), Expect = 2e-48
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 22/116 (18%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK---GITW 59
            + G+ +F + C  CH       N VGP L GVVGR+ G A GF Y+  N N    G+ W
Sbjct: 3   AKAGEAVFKQ-CMTCHR---ADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVW 58

Query: 60  SASTLDIYLQNPKKYIPG--------------TKMVFPGLRKEKDREDLIAYLSTL 101
           +A  +  YL +P  ++                TKM F  L  E+ R+D++AYL+TL
Sbjct: 59  TADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLATL 113

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A* Length = 134

 Score =  147 bits (372), Expect = 2e-47
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 2   SVENGKKIFTRACAQCHTANEGGA------NKVGPNLFGVVGRQTGQAPGFDYTDA---- 51
               G+K F + C  CH              K GPNL+GVVGR+     GF Y D     
Sbjct: 4   DAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEV 62

Query: 52  -NKNKGITWSASTLDIYLQNPKKYIP-GTKMVFPGLRKE----KDREDLIAYLSTL 101
             KN  + WS + L  Y+ +PK ++   T       +K     K++ D++A+L+  
Sbjct: 63  AEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTFKLGKNQADVVAFLAQH 118

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A* Length = 116

 Score =  145 bits (368), Expect = 4e-47
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 18/115 (15%)

Query: 2   SVENGKKIFTRACAQCHT------ANEGGANKVGPNLFGVVGRQTGQAPGFDYTD---AN 52
               G+K F + C  CH+             K GPNL+GVVGR  G  P F Y D   A 
Sbjct: 2   DAAKGEKEFNK-CKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVAL 60

Query: 53  KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
              G  W+   +  Y+++P  ++          T+M F   +  +D    +A + 
Sbjct: 61  GASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASVV 115

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1 Length = 137

 Score =  144 bits (365), Expect = 2e-46
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 18/115 (15%)

Query: 2   SVENGKKIFTRACAQCHT------ANEGGANKVGPNLFGVVGRQTGQAPGFDYTD---AN 52
               G+K F + C  CH+             K GPNL+GVVGR  G  P F Y D   A 
Sbjct: 23  DAAKGEKEFNK-CKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVAL 81

Query: 53  KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
              G  W+   +  Y+++P  ++          T M F   +  +D    +A + 
Sbjct: 82  GASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLASVV 136

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A* Length = 124

 Score =  141 bits (358), Expect = 2e-45
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 21/119 (17%)

Query: 2   SVENGKKIFTRACAQCHTANE-------GGANKVGPNLFGVVGRQTGQAPGFD-YTDANK 53
             E G K F + C  CH   +       G   K GPNL+GVVGR  G    F  Y +  K
Sbjct: 4   DPEAGAKAFNQ-CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMK 62

Query: 54  N---KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
               KG+ W       Y+Q+P K++           KM F  L+KE D  ++ AYL  +
Sbjct: 63  EAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQV 120

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} Length = 99

 Score = 80.3 bits (198), Expect = 2e-21
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 16/105 (15%)

Query: 3   VENGKKIF-TRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            E G +++  +AC  CH+ +  G+  VGP+  G+ G       G                
Sbjct: 6   AELGARLYREKACFSCHSID--GSRLVGPSFKGLYGSTRTFEDGTTAV---------ADE 54

Query: 62  STLDIYLQNPKKYI----PGTKMVFPGLRKEKDREDLIAYLSTLH 102
           + L   +  P   +    P           E++   LI ++    
Sbjct: 55  NYLRESILQPGAKVVQGYPNVMPASYASLSEREVAALIEFIKQQQ 99

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida} Length = 110

 Score = 63.5 bits (154), Expect = 7e-15
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 15/102 (14%)

Query: 2  SVENGKKIFTRACAQCHTANEGGANK--VGPNLFGVVGRQTGQAPGFDYTDANKNKGITW 59
          S  +G++IF   C+ CHT       +  +GP+L GV                   + +  
Sbjct: 2  SFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGV---------TRQRDANWLVRWLKV 52

Query: 60 SASTL---DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
              L   D       +      M    L  + +   LI+YL
Sbjct: 53 PDQMLAEKDPLAMLLFEQYNRLAMPNMRL-GDAEVSALISYL 93

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} Length = 337

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 4   ENGKKIFTRACAQCHTAN-EGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           E G+++F + CA CH          +GP L     R +  A   + T  N          
Sbjct: 237 ERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLGAGIVENTPEN---------- 286

Query: 63  TLDIYLQNPKKYIPGTKM-VFPGLRKEKDREDLIAYLSTL 101
            L  ++++P    PG KM  FP L  E+D + L+ YL  L
Sbjct: 287 -LKAWIRDPAGMKPGVKMPGFPQL-SEEDLDALVRYLEGL 324

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus} Length = 124

 Score = 59.3 bits (143), Expect = 6e-13
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 18/102 (17%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
            + G+++F   C  CH  +E     +GP L  V  R                  +     
Sbjct: 34  AQQGEQLFNTYCTACHRLDERF---IGPALRDVTKR---------RGPVYIMNVMLNPNG 81

Query: 63  TLD---IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            +    +  Q  ++Y  GT M    L  E+    ++ YL  +
Sbjct: 82  MIQRHPVMKQLVQEY--GTMMTDMAL-SEEQARAILEYLRQV 120

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1 Length = 135

 Score = 54.7 bits (131), Expect = 4e-11
 Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 28/109 (25%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             NG+KIF   C QCH     G  K   N+                 D    +    +  
Sbjct: 26  FTNGQKIFVDTCTQCHL---QGKTKTNNNV------------SLGLADLAGAEPRRDNVL 70

Query: 63  TLDIYLQNPKKY-----------IPGTKMVFPGLRK--EKDREDLIAYL 98
            L  +L+NPK Y                 ++P +R   E D  D+  Y 
Sbjct: 71  ALVEFLKNPKSYDGEDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYT 119

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} Length = 146

 Score = 54.3 bits (130), Expect = 7e-11
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 19/99 (19%)

Query: 2   SVENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWS 60
           +V  GK ++ +  C  CHT    GA    P L  VVGR+ G+                  
Sbjct: 48  AVVRGKLVWEQNNCVGCHTLLGEGA-YFAPELGNVVGRRGGEE---------------GF 91

Query: 61  ASTLDIYLQNPKKYIPG-TKMVFPGLRKEKDREDLIAYL 98
            + L  +++     +PG   M    L  E   +DL  +L
Sbjct: 92  NTFLQAWMKIQPLNVPGRRAMPQFHL-SEGQVDDLAEFL 129

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V* Length = 137

 Score = 53.6 bits (128), Expect = 1e-10
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 17/99 (17%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
              GK++F  ACA CH    GG  K  P+L                           +  
Sbjct: 26  YLEGKRLFQYACASCHV---GGITKTNPSL------------DLRTETLALATPPRDNIE 70

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            L  Y++NP  Y  G + +   +       D+   +  L
Sbjct: 71  GLVDYMKNPTTY-DGEQEIA-EVHPSLRSADIFPKMRNL 107

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1 Length = 163

 Score = 52.9 bits (126), Expect = 3e-10
 Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 28/109 (25%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
              GK++F  ACA CH    GG  K  P+L                           +  
Sbjct: 52  YLEGKRLFQYACASCHV---GGITKTNPSL------------DLRTETLALATPPRDNIE 96

Query: 63  TLDIYLQNPKKY-----------IPGTKMVFPGLRK--EKDREDLIAYL 98
            L  Y++NP  Y              +  +FP +R   EKD   +  ++
Sbjct: 97  GLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHI 145

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1 Length = 129

 Score = 49.8 bits (118), Expect = 3e-09
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 28/109 (25%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           ++ G+++F  ACAQCH     G  +  P++                           + +
Sbjct: 24  IKKGQQVFNAACAQCHA---LGVTRTNPDV------------NLSPEALALATPPRDNIA 68

Query: 63  TLDIYLQNPKKYIPGTKM-----------VFPGLRK--EKDREDLIAYL 98
            L  Y++NP  Y    ++           +FP +R   E D  ++  Y+
Sbjct: 69  ALVDYIKNPTTYDGFVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYI 117

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus} Length = 137

 Score = 49.3 bits (117), Expect = 4e-09
 Identities = 23/129 (17%), Positives = 34/129 (26%), Gaps = 51/129 (39%)

Query: 4   ENGKKIFTRA----CAQCHTANEGGANK----VGPNLFGVVGRQTGQAPGFDYTDANKNK 55
           E G +I T      C  CH        +    + P L G   R                 
Sbjct: 27  EEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGDR----------------- 69

Query: 56  GITWSASTLDIYLQNPKKYIPGTK-----------------------MVFPGLRKEKDRE 92
              W+ + L   + N K    GT                             +   +  E
Sbjct: 70  ---WTEAQLRGIVANAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIE 126

Query: 93  DLIAYLSTL 101
           D++A+L TL
Sbjct: 127 DVVAFLVTL 135

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B* Length = 138

 Score = 46.7 bits (110), Expect = 4e-08
 Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 51/130 (39%)

Query: 3   VENGKKIFTR----ACAQCHTANEGGANK----VGPNLFGVVGRQTGQAPGFDYTDANKN 54
              G+++ T      C  CH   E    +    VGP+L GV  R                
Sbjct: 27  PVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR---------------- 70

Query: 55  KGITWSASTLDIYLQNPKKYIPGTK-----------------------MVFPGLRKEKDR 91
               +  + +   L N K   P T                             L      
Sbjct: 71  ----YPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQI 126

Query: 92  EDLIAYLSTL 101
           ED++AYL TL
Sbjct: 127 EDVVAYLMTL 136

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B* Length = 208

 Score = 47.2 bits (111), Expect = 6e-08
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 20/93 (21%)

Query: 14  CAQCHT--ANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNP 71
           C  CH     E     +GP+L G      G+   F   DA       +          + 
Sbjct: 125 CYACHQLDPKEVSYGTLGPSLVGY-----GRERNFSAEDAKIAFAKVY----------DA 169

Query: 72  KKYIPGTKM-VF--PGLRKEKDREDLIAYLSTL 101
           +  +  + M  F   G+  E+  +D++AYL   
Sbjct: 170 QASLACSSMPRFGVNGVLTEQQIKDVVAYLFDP 202

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A* Length = 71

 Score = 42.1 bits (99), Expect = 6e-07
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 28/97 (28%)

Query: 5   NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
           + + +  + C  CH  +  GA    P +                          +S   +
Sbjct: 2   DAEAVVQQKCISCHGGDLTGA--SAPAIDKAGAN--------------------YSEEEI 39

Query: 65  DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
              + N +  +P       G+ K  + E + A+L+  
Sbjct: 40  LDIILNGQGGMP------GGIAKGAEAEAVAAWLAEK 70

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D* Length = 147

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 21/101 (20%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            +   ++++   C+ CH     G   +GP L             + Y     + G+  + 
Sbjct: 45  ILPEAEELYAGMCSGCHGHYAEGK--IGPGLND---------AYWTYPGNETDVGLFSTL 93

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
                          G      G     +    +A++  L+
Sbjct: 94  ----------YGGATGQMGPMWGSLTLDEMLRTMAWVRHLY 124

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} Length = 88

 Score = 37.9 bits (88), Expect = 4e-05
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 19/95 (20%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          V  G++IF   CA CH    GG N + P                +    ++      +  
Sbjct: 3  VGAGEQIFNANCAACHA---GGQNVIMPE------------KTLEKEALDQYLAGGRTEK 47

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAY 97
          ++   +   K  +P     F G   +++  ++ AY
Sbjct: 48 SIISQVTGGKNAMPA----FGGRLSDEEIANVAAY 78

>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans} Length = 170

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 21/101 (20%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            +  G++I+  +C+ CH     G   VGP L             + Y     +KG+  + 
Sbjct: 47  CLPKGEEIYLESCSGCHGHIGEGK--VGPGLND---------SYWTYPKNTTDKGLFET- 94

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
                          G         +  +   LIA++  + 
Sbjct: 95  ---------IFGGANGMMGPHGQDLELDNMLKLIAWIRHIQ 126

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans} Length = 87

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 1  MSVENGKKIFTRACAQCHTANEGGANKVG 29
               G+K++  AC  CH +    A K+G
Sbjct: 7  QLDPAGEKLYRSACVVCHASGVANAPKLG 35

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A* Length = 89

 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          V  G  +F+  CA CH             L      +  +    D            + +
Sbjct: 3  VAAGASVFSANCAACH-MGGRNVIVANKTLSKSDLAKYLKGFDDD------------AVA 49

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAY 97
           +   + N K  +PG    F G       ED+ AY
Sbjct: 50 AVAYQVTNGKNAMPG----FNGRLSPLQIEDVAAY 80

>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A* Length = 85

 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLF 33
          ++NG+K+F+  CA CH    GG N + P+  
Sbjct: 3  LDNGEKVFSANCAACHA---GGNNAIMPDKT 30

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} Length = 99

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 20/96 (20%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             G ++F   CA CH    G        L        G     D               
Sbjct: 19 NSGGGELFATHCAGCH-PQGGNTVHPEKTLARARREANGIRTVRDVAAY----------- 66

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
               ++NP   +P        +    D   +  Y+
Sbjct: 67 -----IRNPGPGMPAFG---EAMIPPADALKIGEYV 94

>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A* Length = 81

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 2  SVENGKKIFTRACAQCHTANEGGANKVG 29
           +++ + I+ +AC  CH+    GA K  
Sbjct: 2  DLQDAEAIYNKACTVCHSMGVAGAPKSH 29

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP} Length = 93

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 14/95 (14%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             G ++F   CA CH                    +T +A       A    G      
Sbjct: 3  AAAGAQVFAANCAACHAGGNNAVM----------PTKTLKADALKTYLAGYKDGSKSLEE 52

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAY 97
           +   + N +  +P     F G   + D  ++ AY
Sbjct: 53 AVAYQVTNGQGAMPA----FGGRLSDADIANVAAY 83

>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1 Length = 83

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 5  NGKKIFTRACAQCHTANEGGANKVGPN 31
          +G  +  + C  CH      A KVG +
Sbjct: 6  SGDDVVAKYCNACHGTGLLNAPKVGDS 32

>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A* Length = 89

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNL 32
          +  GK+ F   CA CH    GG N V P+ 
Sbjct: 4  LALGKQTFEANCAACH---AGGNNSVIPDH 30

>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C* Length = 80

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)

Query: 5  NGKKIFTRACAQCHTANEGGANKVGPNLFG 34
          +GK ++ + C  CH         VGP L G
Sbjct: 6  SGKNLYDKVCGHCH----KPEVGVGPVLEG 31

>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A* Length = 82

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 19/99 (19%)

Query: 4   ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           E+ + +     C  CH  +      VGP    V  +  GQA                   
Sbjct: 1   EDPEVLAKNKGCVACHAID---TKMVGPAYKDVAAKFAGQAGAEAE-------------- 43

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            L   ++N  + + G   + P    + + + L  ++ + 
Sbjct: 44  -LAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQ 81

>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1 Length = 172

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 2  SVENGKKIFTRACAQCHTANEGGANKVGPNLFG 34
           + NG+ +F  +C+ CH     G   +GP L  
Sbjct: 53 CLRNGESLFATSCSGCHGHLAEGK--LGPGLND 83

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A* Length = 90

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNL 32
          +  G ++F   CA CH    GG N V P  
Sbjct: 3  LALGAQVFNGNCAACHM---GGRNSVMPEK 29

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1 Length = 91

 Score = 34.4 bits (79), Expect = 9e-04
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFG 34
          + +GKK+F   CA CH             L  
Sbjct: 6  LADGKKVFAGNCAACHLGGNNSVLA-DKTLKK 36

>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A* Length = 82

 Score = 34.3 bits (79), Expect = 9e-04
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 4   ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           ++G+ +F    CA CH+ +      VGP L  V               A KN G+  +A 
Sbjct: 1   QDGEALFKSKPCAACHSVD---TKMVGPALKEV---------------AAKNAGVEGAAD 42

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
           TL ++++N  + + G   + P    E++ + L  ++ +L
Sbjct: 43  TLALHIKNGSQGVWGPIPMPPNPVTEEEAKILAEWVLSL 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	99.96
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	99.96
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	99.96
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	99.96
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	99.96
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	99.95
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	99.95
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	99.94
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	99.94
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	99.94
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	99.94
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	99.94
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	99.94
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	99.93
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	99.93
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	99.92
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	99.84
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	99.82
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	99.8
1cno_A	87	Cytochrome C552; electron transport, pseudomonas n	99.79
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	99.79
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	99.77
3cu4_A	85	Cytochrome C family protein; monoheme cytochrome,	99.76
1c53_A	79	Cytochrome C553; electron transport; HET: HEM; 1.8	99.76
1cch_A	82	Cytochrome C551; electron transport; HET: HEM; NMR	99.76
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	99.75
2exv_A	82	Cytochrome C-551; alpha helix, heme C, electron tr	99.75
1wve_C	80	4-cresol dehydrogenase [hydroxylating] cytochrome	99.75
3ph2_B	86	Cytochrome C6; photosynthesis, cytochrome F, photo	99.75
1e29_A	135	Cytochrome C549; electron transport, PSII associat	99.75
2zzs_A	103	Cytochrome C554; C-type cytochrome, electron trans	99.75
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	99.74
1gdv_A	85	Cytochrome C6; RED ALGA, electron transport; HET:	99.74
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	99.73
2ce0_A	105	Cytochrome C6; chloroplast, electron transport, he	99.73
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	99.73
3cp5_A	124	Cytochrome C; electron transfer protein, electron	99.72
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	99.72
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	99.72
2d0s_A	79	Cytochrome C, cytochrome C552; heme protein, elect	99.72
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	99.71
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	99.7
2c8s_A	172	Cytochrome C-L; HAEM, heme, electron transport, me	99.7
1a56_A	81	C-551, ferricytochrome C-552; hemoprotein, prokary	99.7
1c6r_A	89	Cytochrome C6; electron transport protein, reduced	99.69
1ayg_A	80	Cytochrome C-552; electron transport, porphyrin, f	99.69
2zxy_A	87	Cytochrome C552, cytochrome C555; heme protein, ox	99.68
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	99.68
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	99.67
2d0w_A	170	Cytochrome CL; electron transfer, electron transpo	99.67
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	99.67
1kx2_A	81	Mono-heme C-type cytochrome SCYA; HAEM protein, fe	99.64
1c52_A	131	Cytochrome-C552; electron transport protein, MAD,	99.64
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	99.61
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	99.4
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	99.6
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	99.6
1cc5_A	83	Cytochrome C5; electron transport (heme protein);	99.59
1gks_A	78	Cytochrome C551; halophilic purple phototrophic ba	99.59
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	99.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.57
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	99.55
2xts_B	205	Cytochrome; oxidoreductase-electron transport comp	99.55
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	99.5
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.5
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.49
3mk7_B	203	Cytochrome C oxidase, CBB3-type, subunit O; TM hel	99.47
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.46
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	99.46
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	99.45
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.44
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	99.42
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	99.41
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	99.4
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	99.07
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	98.99
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	98.97
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	98.96
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	98.94
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	98.91
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	98.91
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	98.89
3a9f_A	92	Cytochrome C; alpha helix, mono heme, electron tra	98.85
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	98.85
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	98.8
2blf_B	81	SORB, sulfite\:cytochrome C oxidoreductase subunit	98.8
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	98.79
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.72
1e8e_A	124	Cytochrome C''; oxidoreductase(cytochrome), ligand	98.66
3cx5_D	248	Cytochrome C1, heme protein, mitochondrial; comple	98.64
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	98.61
3sjl_A	373	Methylamine utilization protein MAUG; MAUG, C-heme	98.58
1dw0_A	112	Cytochrome C; asparagine ligation, oxygen binding,	98.58
1pp9_D	241	Cytochrome C-1, cytochrome C1, heme protein, mitoc	98.56
2yiu_B	263	Cytochrome C1, heme protein; oxidoreductase; HET:	98.52
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	98.42
1pby_A	489	Quinohemoprotein amine dehydrogenase 60 kDa subuni	98.35
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	98.22
2qjy_B	269	Cytochrome C1; cytochrome B, 8 TM helixces cytochr	98.19
1zrt_D	258	Cytochrome C1; cytochrome BC1, membrane protein, h	97.56
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	97.52
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	97.44
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	97.4
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	97.38
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	97.29
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.0
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	96.91
2fw5_A	139	DHC, diheme cytochrome C; electron transfer, elect	96.65
2fwt_A	125	DHC, diheme cytochrome C; diheme protein, electron	96.59
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	96.45
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	95.79
3u99_A	148	Diheme cytochrome C; cytochrome C fold, electron t	95.45
1pby_A	489	Quinohemoprotein amine dehydrogenase 60 kDa subuni	93.26
3sjl_A	373	Methylamine utilization protein MAUG; MAUG, C-heme	88.98
3ayf_A	800	Nitric oxide reductase; oxidoreductase; HET: HEM B	88.23
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	86.48
3b42_A	135	GSU0935, methyl-accepting chemotaxis protein, puta	81.38

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1

Probab=99.96  E-value=8.6e-29  Score=145.54  Aligned_cols=102  Identities=53%  Similarity=0.981  Sum_probs=92.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|+++|+++|++||++++.+....||+|.++..+..+..++|.|++.+...+..|+.++|.++|++|+...++++|
T Consensus        10 ~~~~~G~~lf~~~C~~CHg~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~m   89 (112)
T 1ccr_A           10 GNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXKYIPGTKM   89 (112)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHSTTCCC
T ss_pred             ccHHHHHHHHHhhcHHhCCCCCCCCCCCCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccccCCCCCC
Confidence            57889999999999999999986656789999999888888888899999888888999999999999999877788999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|.++||++|+++|++||++|+
T Consensus        90 ~~~~~ls~~ei~~l~aYl~~l~  111 (112)
T 1ccr_A           90 VFPGLXKPQERADLISYLKEAT  111 (112)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHcC
Confidence            9988889999999999999874

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...

Probab=99.96  E-value=1.8e-28  Score=142.06  Aligned_cols=102  Identities=60%  Similarity=1.100  Sum_probs=91.0

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||.++|++||++++.+....||+|.++..+..+..++|.+++.++..+..|+.++|..+|++|....+++.|
T Consensus         1 gd~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~M   80 (103)
T 1i54_A            1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM   80 (103)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred             CcHHHHHHHHHHhhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcC
Confidence            68999999999899999999987667789999998888877778888888888889999999999999999877788899


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ||.++++++|+++|++||++++
T Consensus        81 p~~~l~~~~ei~~l~aYl~sl~  102 (103)
T 1i54_A           81 IFAGIKKKGERQDLVAYLKSAT  102 (103)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHC
T ss_pred             CccCCCCHHHHHHHHHHHHHhc
Confidence            9877756999999999999874

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*

Probab=99.96  E-value=1.1e-28  Score=150.34  Aligned_cols=99  Identities=43%  Similarity=0.817  Sum_probs=91.7

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|+++|+++| ++|++||+++  +...+||+|.++.++..+..++|.|++.++..++.|+.++|.+||++|+...|++.|
T Consensus        42 ~d~~~G~~lf-~~C~~CH~~~--~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt~M  118 (140)
T 3m97_X           42 ADPAAGEKVF-GKCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKM  118 (140)
T ss_dssp             CCHHHHHHHG-GGTTTTCCSS--SCCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             cCHHHHHHHH-HhhhhhcCCC--CCCCcCCCccccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCCCC
Confidence            5788999999 7999999994  356789999999999999999999999999999999999999999999988899999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ||.++++++|+++|++||++|+
T Consensus       119 p~~gllsdedi~aLiAYL~sLk  140 (140)
T 3m97_X          119 AFAGLPKIEDRANLIAYLEGQQ  140 (140)
T ss_dssp             CCCCCCSHHHHHHHHHHHHTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcC
Confidence            9999989999999999999986

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...

Probab=99.96  E-value=2.2e-28  Score=142.87  Aligned_cols=102  Identities=54%  Similarity=1.004  Sum_probs=91.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|++||+++|++||++++.+....||+|.++..+..+..++|.++..+...+..|+.++|..+|++|+...+++.|
T Consensus         6 ~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~M   85 (108)
T 1ycc_A            6 GSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKYIPGTKM   85 (108)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCC
T ss_pred             ccHHHHHHHHHhhCcccCCCCCCCCCCCCCChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhhcCCccc
Confidence            57889999999899999999987667789999999888887778888888888888899999999999999877788899


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ||.+++|++|+++|++||++|+
T Consensus        86 p~~~l~s~~ei~~l~aYl~sl~  107 (108)
T 1ycc_A           86 AFGGLKKEKDRNDLITYLKKAC  107 (108)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhc
Confidence            9888778999999999999874

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*

Probab=99.95  E-value=3.3e-28  Score=142.08  Aligned_cols=101  Identities=45%  Similarity=0.925  Sum_probs=91.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||.+ |++||++++.+....||+|.++..+..+..++|.|+..++..++.|+.++|..+|++|+...+++.|
T Consensus         1 gd~~~G~~lf~~-C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M   79 (107)
T 1co6_A            1 QDAASGEQVFKQ-CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKM   79 (107)
T ss_dssp             CCHHHHHHHHHH-HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHHH-hHhhCCCCCCCCCCCCCCcccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCCC
Confidence            689999999998 9999999976667789999999888888888899999888889999999999999999877788899


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ||.+++|++|+++|++||++++
T Consensus        80 p~~~l~s~~ei~~l~aYl~sl~  101 (107)
T 1co6_A           80 IFAGVKDEQKVSDLIAYIKQFN  101 (107)
T ss_dssp             CCCCCCCHHHHHHHHHHHHTBC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcc
Confidence            9888889999999999999874

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1

Probab=99.95  E-value=4.8e-28  Score=141.11  Aligned_cols=101  Identities=48%  Similarity=0.944  Sum_probs=89.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|++||.++|++||+.++. +...||+|.++..+..+..++|.|++.++..+..|+.++|..+|++|+...+++.|
T Consensus         6 ~~~~~G~~lf~~~C~~CH~~~g~-~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M   84 (106)
T 1hro_A            6 GDPVEGKHLFHTICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKM   84 (106)
T ss_dssp             CCHHHHHHHHTTTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCC
T ss_pred             ccHHHHHHHHHcchhhhCCCCCC-CCCCCCCCCCccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCCCCC
Confidence            57899999999999999999864 45679999998888877778888898888888999999999999999877888899


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ||.++++++|+++|++||++|+
T Consensus        85 p~~~~~~~~ei~~l~aYl~sl~  106 (106)
T 1hro_A           85 GYPGQPDPQKRADIIAYLETLK  106 (106)
T ss_dssp             CCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHhcC
Confidence            9888878999999999999985

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*

Probab=99.94  E-value=7.2e-28  Score=144.33  Aligned_cols=100  Identities=38%  Similarity=0.765  Sum_probs=88.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCC-------CCCCCCCCCccCCcCCcCCCCCCC-ccchhh---hhcCccccHHHHHHHHh
Q psy14949          1 MSVENGKKIFTRACAQCHTANE-------GGANKVGPNLFGVVGRQTGQAPGF-DYTDAN---KNKGITWSASTLDIYLQ   69 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~-------~g~~~~gp~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~~~   69 (102)
                      ||+++|+++|+ +|++||++++       ++.+.+||+|.++.++..+..++| .|++.+   ...++.|+.++|..||.
T Consensus         3 gd~~~G~~~F~-~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l~   81 (124)
T 1cxc_A            3 GDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYVQ   81 (124)
T ss_dssp             SCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred             CCHHHHHHHHH-hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHHh
Confidence            68999999994 8999999875       245678999999999998888888 888887   45789999999999999


Q ss_pred             CCCCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         70 NPKKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        70 ~~~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|+..+|+        +.|+|. +++++|+.+|++||++++
T Consensus        82 ~P~~~~pg~~~d~~a~t~M~~~-l~~~~d~~dliaYL~sl~  121 (124)
T 1cxc_A           82 DPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVA  121 (124)
T ss_dssp             CHHHHHHHHHSCTTCCCSCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred             ChHhhCCCcccCcccCCCCCCc-cCCHHHHHHHHHHHHHcC
Confidence            99988888        899988 778999999999999874

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*

Probab=99.94  E-value=1.7e-27  Score=140.11  Aligned_cols=100  Identities=41%  Similarity=0.822  Sum_probs=86.7

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCCCCCCCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNPKKYIPG   77 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~   77 (102)
                      ||+++|++||+ +|++||++++.+....+|+|.++.++..+..++|.|++.++   ..++.|+.++|..+|++|+...++
T Consensus         2 gd~~~G~~lf~-~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~~~~g   80 (112)
T 3c2c_A            2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLE   80 (112)
T ss_dssp             CCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHHHHHHH-hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhhhcCC
Confidence            68999999997 99999999976667789999999999988889999998874   678899999999999998754443


Q ss_pred             --------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         78 --------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        78 --------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                              +.|||. +++++||++|++||++|+
T Consensus        81 ~~~~~~~~~~Mp~~-l~~~~di~~l~aYl~sl~  112 (112)
T 3c2c_A           81 KSGDPKAKSKMTFK-LTKDDEIENVIAYLKTLK  112 (112)
T ss_dssp             HHCCTTCCCSCCCC-CCCHHHHHHHHHHHTTCC
T ss_pred             CcCCccccCCCCCc-CCCHHHHHHHHHHHHHcC
Confidence                    788977 766899999999999985

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.94  E-value=4e-27  Score=135.96  Aligned_cols=98  Identities=46%  Similarity=0.878  Sum_probs=86.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCC-CCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTK   79 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   79 (102)
                      ||+++|+++|+ +|++||+++   +...||+|.++..+..+. .++|.+++.++..++.|+.++|..+|++|+...+++.
T Consensus         2 gd~~~G~~l~~-~C~~CH~~~---~~~~gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~   77 (100)
T 1qn2_A            2 GDAAAGEKAFA-PCKACHNFE---KNGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTK   77 (100)
T ss_dssp             CCHHHHHHHTG-GGGGTCCSS---SCSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred             ccHHHHHHHHH-HHHHhcCCC---CCCCCCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCC
Confidence            68999999996 599999988   345799999988887766 6788889999888999999999999999987778889


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         80 MVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        80 m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      |||.+++|++|+++|++||++|+
T Consensus        78 Mp~~~~~s~~di~~l~aYl~sl~  100 (100)
T 1qn2_A           78 MVFPGISDPKKVDDIIAYLKTKS  100 (100)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcC
Confidence            99888889999999999999985

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*

Probab=99.94  E-value=9.7e-28  Score=142.29  Aligned_cols=98  Identities=34%  Similarity=0.726  Sum_probs=86.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCC------CCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEG------GANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNP   71 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~   71 (102)
                      ||+++|+++|. +|++||++++.      +.+.+||+|.++.++..++.++|.|++.+.   ..++.|+.++|..||++|
T Consensus         1 gd~~~G~~~F~-~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P   79 (116)
T 1vyd_A            1 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP   79 (116)
T ss_dssp             CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHH-cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCH
Confidence            78999999997 89999999854      456789999999999999999999999884   788999999999999999


Q ss_pred             CCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         72 KKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        72 ~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +...|+        +.|||. + +++|. +|++||++|+
T Consensus        80 ~~~~pg~~~d~~~~t~Mpf~-l-~~~~~-dliaYL~sl~  115 (116)
T 1vyd_A           80 GAFLKEKLDDKKAKTEMAFK-L-AKGGE-DVAAYLASVV  115 (116)
T ss_dssp             HHHHHHHHTCTTCCCSCCCC-C-SSCHH-HHHHHHHHTC
T ss_pred             HHhCCCcccCccccCCCCCC-C-CCHHH-HHHHHHHHhc
Confidence            988888        999977 5 54444 9999999985

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*

Probab=99.94  E-value=8.3e-28  Score=145.76  Aligned_cols=98  Identities=35%  Similarity=0.690  Sum_probs=88.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCC------CCCCCCCCccCCcCCcCCCCCCCccchhh-----hhcCccccHHHHHHHHh
Q psy14949          1 MSVENGKKIFTRACAQCHTANEG------GANKVGPNLFGVVGRQTGQAPGFDYTDAN-----KNKGITWSASTLDIYLQ   69 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~   69 (102)
                      ||+++|++||.+ |++||++++.      +...+||+|.++.++..++.++|.|++.+     ...++.|+.++|..||+
T Consensus         3 gd~~~G~~lF~~-C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l~   81 (134)
T 2bh4_X            3 GDAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYVT   81 (134)
T ss_dssp             CCHHHHHHHGGG-TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHH-hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHHh
Confidence            689999999986 9999999864      45788999999999999999999999988     77899999999999999


Q ss_pred             CCCCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         70 NPKKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        70 ~~~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|+...++        +.|||.  |+++|+ +|++||++++
T Consensus        82 ~P~~~~pg~~~d~~a~t~Mpf~--Ls~~e~-dliaYL~sl~  119 (134)
T 2bh4_X           82 DPKPWLVEKTGDSAAKTKKTFK--LGKNQA-DVVAFLAQHS  119 (134)
T ss_dssp             CHHHHHHHHHCCTTCCCSCCCC--CCSCHH-HHHHHHHHTC
T ss_pred             CHHhcCCCcccCccccCCCCCC--CChHHH-HHHHHHHHcC
Confidence            99988787        899987  688999 9999999874

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1

Probab=99.94  E-value=7.1e-27  Score=141.80  Aligned_cols=98  Identities=35%  Similarity=0.694  Sum_probs=87.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCC-----CCCCCCCCccCCcCCcCCCCCCCccchhh-----hhcCccccHHHHHHHHhC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEG-----GANKVGPNLFGVVGRQTGQAPGFDYTDAN-----KNKGITWSASTLDIYLQN   70 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~-----g~~~~gp~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~   70 (102)
                      ||+++|++||.+ |++||++++.     +...+||+|.++.++..++.++|.|++.+     ...++.|+.++|..||++
T Consensus         4 gd~~~G~~lF~~-CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~~   82 (135)
T 155c_A            4 GDAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVTD   82 (135)
T ss_dssp             CCSHHHHHHHTT-TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHHS
T ss_pred             cCHHHHHHHHHH-HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHhC
Confidence            688999999986 9999999864     45678999999999999999999999988     778899999999999999


Q ss_pred             CCCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         71 PKKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        71 ~~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      |+...|+        +.|||.  |+++|+ +|++||++++
T Consensus        83 P~~~~pg~~~~~~~~t~Mpf~--L~~~e~-dliAYL~sl~  119 (135)
T 155c_A           83 PKPLVKKMTDDKGAKTKMTFK--MGKNQA-DVVAFLAQDD  119 (135)
T ss_dssp             STTTTTTTSCCSCCCCSCCCC--CCSCHH-HHHHHHHHHS
T ss_pred             HHhhCCCccccccccCCCCCC--CCCHHH-HHHHHHHhcC
Confidence            9999998        899977  467777 9999999874

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1

Probab=99.93  E-value=5e-26  Score=135.27  Aligned_cols=100  Identities=38%  Similarity=0.819  Sum_probs=85.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCCCCCCCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNPKKYIPG   77 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~   77 (102)
                      ||+++|++|| ++|++||++++.+...+||+|.++..+..+..++|.|++.+.   ..++.|+.++|..||++|....|+
T Consensus         3 gd~~~G~~lf-~~C~~CH~~~~~~~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~~~~~g   81 (121)
T 1jdl_A            3 GDPAKGEAVF-KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRK   81 (121)
T ss_dssp             CCHHHHHHHG-GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHH-hhhhhhCCCCCCCCCCCCCCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcccccCC
Confidence            6889999999 799999999976567789999999998888888888888763   567889999999999998765554


Q ss_pred             --------------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         78 --------------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        78 --------------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                                    +.|||. +++++|+++|++||++|+
T Consensus        82 ~~~~~~~~~~~~~~~~Mp~~-l~~~~ei~~l~aYL~sl~  119 (121)
T 1jdl_A           82 FLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFS  119 (121)
T ss_dssp             HHHHTTCGGGGSSCCSCCCC-CCCHHHHHHHHHHHGGGC
T ss_pred             cccccchhhcccccccCCcc-CCCHHHHHHHHHHHHHcc
Confidence                          788977 655599999999999974

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1

Probab=99.93  E-value=3.7e-26  Score=138.91  Aligned_cols=98  Identities=33%  Similarity=0.697  Sum_probs=85.9

Q ss_pred             CcHHhHHHHHHHhcccccCCCCC------CCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEG------GANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNP   71 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~   71 (102)
                      +|+++|+++|. +|++||++++.      +....||+|.++.++..+..++|.|++.++   ..++.|+.++|..||++|
T Consensus        22 ~~~~~G~~lf~-~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~p  100 (137)
T 1c2n_A           22 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP  100 (137)
T ss_dssp             CCHHHHHHHHH-HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTST
T ss_pred             cChHHHHHHHH-hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhCH
Confidence            57889999998 99999999854      245689999999999999999999998874   688999999999999999


Q ss_pred             CCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         72 KKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        72 ~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +...|+        +.|||.  |+++|+ +|++||++++
T Consensus       101 ~~~~~g~~~~~~~~~~Mp~~--Lsd~e~-~liaYL~sl~  136 (137)
T 1c2n_A          101 GAFLKEKLDDKKAKTGMAFK--LAKGGE-DVAAYLASVV  136 (137)
T ss_dssp             THHHHHHHTCSCCCCSCCCC--CSSSHH-HHHHHHHHHC
T ss_pred             HhhCCCcccccCcCCCCCCC--CCcHHH-HHHHHHHHcc
Confidence            877776        889975  689999 9999999874

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*

Probab=99.92  E-value=3.5e-25  Score=130.74  Aligned_cols=97  Identities=42%  Similarity=0.855  Sum_probs=83.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCCCCCCCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNPKKYIPG   77 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~   77 (102)
                      ||+++|+++|+ +|++||+.   +...+||+|.++.++..+..++|.|++.+.   ..++.|+.++|.+||++|+...++
T Consensus         1 gd~~~G~~lf~-~C~~CH~~---~~~~~GP~l~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g   76 (114)
T 1i8o_A            1 EDAKAGEAVFK-QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK   76 (114)
T ss_dssp             CCHHHHHHHHH-HHTTTCCS---SSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             CcHHHHHHHHH-hHHhhCCC---cccCcCcccccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCC
Confidence            68999999996 99999993   356679999999999998888998888774   678899999999999999876666


Q ss_pred             --------------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         78 --------------TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        78 --------------~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                                    +.|||. +.+++|+++|++||++|+
T Consensus        77 ~~~d~~~~~~~~~~~~Mp~~-l~~~~d~~~liaYL~sl~  114 (114)
T 1i8o_A           77 FLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLATLK  114 (114)
T ss_dssp             HHHHTTCGGGCCSCCSSCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             CcccccccccccccCcCCCC-CCCHHHHHHHHHHHHhcC
Confidence                          889977 544499999999999985

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}

Probab=99.84  E-value=7e-21  Score=108.95  Aligned_cols=91  Identities=19%  Similarity=0.322  Sum_probs=69.2

Q ss_pred             CcHHhHHHHHHHh-cccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC--
Q psy14949          1 MSVENGKKIFTRA-CAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG--   77 (102)
Q Consensus         1 ~d~~~G~~lf~~~-C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--   77 (102)
                      +++++|++||.++ |++||+.++  ....+|+|.++..+......+         .+..|+.++|..+|+++....+.  
T Consensus         4 ~~~~~G~~l~~~~~C~~CHg~~g--~~~~gp~l~~~~~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~g~   72 (99)
T 1w2l_A            4 PLAELGARLYREKACFSCHSIDG--SRLVGPSFKGLYGSTRTFEDG---------TTAVADENYLRESILQPGAKVVQGY   72 (99)
T ss_dssp             CHHHHHHHHHHHTSGGGTCCSSS--CCSSSCCSTTCTTCEEEBTTS---------CEEECCHHHHHHHHHSTTSSCBTTS
T ss_pred             ccHHHHHHHHhhCChhhcCCCCC--CCCCCCCcccccccccccCCC---------CcccCCHHHHHHHHHccCccccccc
Confidence            4678999999998 999999885  345689998876554322211         22467899999999999865432  


Q ss_pred             -CccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949         78 -TKMV-FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        78 -~~m~-~~~~ls~~e~~~l~~yl~sl~  102 (102)
                       +.|| |...||++|+++|++||++|+
T Consensus        73 ~~~Mp~~~~~ls~~ei~~l~~yl~sl~   99 (99)
T 1w2l_A           73 PNVMPASYASLSEREVAALIEFIKQQQ   99 (99)
T ss_dssp             CSCCCGGGGGCCHHHHHHHHHHHHTCC
T ss_pred             cccCccccccCCHHHHHHHHHHHHHcC
Confidence             4675 766789999999999999985

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}

Probab=99.82  E-value=5.1e-21  Score=111.41  Aligned_cols=80  Identities=29%  Similarity=0.517  Sum_probs=55.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCC--CCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC--
Q psy14949          1 MSVENGKKIFTRACAQCHTANEG--GANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP--   76 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~--g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--   76 (102)
                      ||+++|++||.++|++||+.++.  +....+|+|.++..+.                    +.++|..++.+|....+  
T Consensus         1 gd~~~G~~lf~~~C~~CH~~~g~~~g~~~~gP~L~~~~~~~--------------------~~~~l~~~i~~p~~~~~g~   60 (110)
T 2l4d_A            1 GSFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGVTRQR--------------------DANWLVRWLKVPDQMLAEK   60 (110)
T ss_dssp             ----CHHHHHHHHTTTTCCSSCSBTTBCTTSCCCTTGGGTS--------------------CTTHHHHHTTSHHHHHHTT
T ss_pred             CCHHHHHHHHHHhhHHhcCCCCCCCCCCCCCCChhhhhccc--------------------CHHHHHHHHhChhhhccCc
Confidence            68899999999999999999876  4467789998765433                    23456666665543221  


Q ss_pred             ------------CCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         77 ------------GTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        77 ------------~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                                  .+.||... ||++|+++|++||+++
T Consensus        61 ~~~~~~~~~g~~~~~Mp~~~-Ls~~ei~~l~~yl~~~   96 (110)
T 2l4d_A           61 DPLAMLLFEQYNRLAMPNMR-LGDAEVSALISYLEEE   96 (110)
T ss_dssp             CHHHHHHHHHHTSCCCCCCC-CCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhccCcCcCCCCC-CCHHHHHHHHHHHHHc
Confidence                        34676445 6999999999999986

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}

Probab=99.80  E-value=1.1e-19  Score=109.92  Aligned_cols=82  Identities=29%  Similarity=0.466  Sum_probs=62.6

Q ss_pred             CcHHhHHHHHH----HhcccccCCCCCCC----CCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949          1 MSVENGKKIFT----RACAQCHTANEGGA----NKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK   72 (102)
Q Consensus         1 ~d~~~G~~lf~----~~C~~CH~~~~~g~----~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (102)
                      +++++|++||.    .+|++||+.++.+.    ...+|+|.++..                    .|+.++|..+|.+|.
T Consensus        24 ~~~~~G~~lf~~~~~~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~--------------------~~~~~~l~~~i~~p~   83 (137)
T 2c1d_B           24 GNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGD--------------------RWTEAQLRGIVANAK   83 (137)
T ss_dssp             CCHHHHHHHHTCTTTTCGGGTBCCTTCTTCCSCCCSBCCSTTHHH--------------------HSCHHHHHHHHHHGG
T ss_pred             CCHHHHHHHHhcccccChhhhcCCCCCCCccccccCCCCHhHhhh--------------------ccCHHHHHHHHcCcc
Confidence            47889999998    78999999986532    345677765432                    246789999999988


Q ss_pred             CCCCCCccC-CC----------------------CCCCHHHHHHHHHHHhhcC
Q psy14949         73 KYIPGTKMV-FP----------------------GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        73 ~~~~~~~m~-~~----------------------~~ls~~e~~~l~~yl~sl~  102 (102)
                      ...+++.|| |.                      ..||++|+++|++||++|+
T Consensus        84 ~~~~~~~Mp~~~~~~~~~~~g~~~~~~~~Mp~~~~~Ls~~ei~~l~aYl~sl~  136 (137)
T 2c1d_B           84 MTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLK  136 (137)
T ss_dssp             GTSTTCSSCCSSCCSCCSSBBSTTSSSBCCSSCCCSSCHHHHHHHHHHHHTCC
T ss_pred             ccCCCcccCccccccccccccccccccccChhhhcCCCHHHHHHHHHHHHHcc
Confidence            666666665 42                      2679999999999999985

>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1

Probab=99.79  E-value=3e-20  Score=104.45  Aligned_cols=81  Identities=23%  Similarity=0.298  Sum_probs=56.9

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|+++|+++|. +|++||+.++.+....+|+|.+...                    .+..+.|..++...+...++..|
T Consensus         2 ~~~~~G~~ly~-~C~~CHg~~g~g~~~~~P~L~~~~~--------------------~~~~~~l~~~~~g~~~~~~~~~M   60 (87)
T 1cno_A            2 GDIEAGKAKAA-VCAACHGQNGISQVPIYPNLAGQKE--------------------QYLVAALKAYKAGQRQGGQAPVM   60 (87)
T ss_dssp             CCHHHHHHHGG-GTHHHHCTTSCCSSTTSCCCTTCCH--------------------HHHHHHHHHHHTTCBCSTTHHHH
T ss_pred             ccHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHcCCcCCCccccc
Confidence            68899999999 9999999987665556787765310                    11234555555444332223367


Q ss_pred             C-CCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 V-FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~-~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      | |...||++||++|++||++++
T Consensus        61 p~~~~~ls~~ei~~l~~yl~~l~   83 (87)
T 1cno_A           61 QGQATALSDADIANLAAYYASNP   83 (87)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSC
T ss_pred             HHHHhhCCHHHHHHHHHHHHhCC
Confidence            4 656789999999999999874

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*

Probab=99.79  E-value=1e-19  Score=110.17  Aligned_cols=82  Identities=32%  Similarity=0.523  Sum_probs=62.2

Q ss_pred             CcHHhHHHHHHH----hcccccCCCCCC----CCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949          1 MSVENGKKIFTR----ACAQCHTANEGG----ANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK   72 (102)
Q Consensus         1 ~d~~~G~~lf~~----~C~~CH~~~~~g----~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (102)
                      +++++|++||.+    +|++||+.++.+    +...+|+|.++..                    .|+.++|..+|.+|+
T Consensus        25 ~~~~~G~~lf~~~~~~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~--------------------~~~~~~l~~~i~~~~   84 (138)
T 1h32_B           25 GDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAA--------------------RYPEAMIRGILVNSK   84 (138)
T ss_dssp             CCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHH--------------------HSCHHHHHHHHHCHH
T ss_pred             CCHHHHHHHHhhccCCChhhccCCCCcCccccCCcCCCChhHhcc--------------------cCCHHHHHHHHhCcc
Confidence            578899999996    799999998631    3456788876532                    346889999999987


Q ss_pred             CCCCCCccC-C----------------------CCCCCHHHHHHHHHHHhhcC
Q psy14949         73 KYIPGTKMV-F----------------------PGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        73 ~~~~~~~m~-~----------------------~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ...+++.|| |                      ...||++|+++|++||++++
T Consensus        85 ~~~~~~~Mp~~~~~~~~~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~  137 (138)
T 1h32_B           85 NVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT  137 (138)
T ss_dssp             HHSTTCSSCCTTCCSCCSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC
T ss_pred             cCCCCCccCccccccccccccccccCcccCcccccCCCHHHHHHHHHHHHhcC
Confidence            655555554 2                      23679999999999999975

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*

Probab=99.77  E-value=9.6e-19  Score=94.83  Aligned_cols=71  Identities=18%  Similarity=0.320  Sum_probs=54.7

Q ss_pred             HhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCC
Q psy14949          4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFP   83 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~   83 (102)
                      ++|+++|..+|++||+.++.+  ..+|+|.+...                    .++.+.|..+++++..     .||. 
T Consensus         1 ~~G~~l~~~~C~~CHg~~g~g--~~gP~L~~~~~--------------------~~~~~~l~~~i~~g~~-----~Mp~-   52 (71)
T 1c75_A            1 VDAEAVVQQKCISCHGGDLTG--ASAPAIDKAGA--------------------NYSEEEILDIILNGQG-----GMPG-   52 (71)
T ss_dssp             CCHHHHHHHHTHHHHCTTSSC--SSSCCCTTGGG--------------------TSCHHHHHHHHHHCBT-----TBCS-
T ss_pred             CcHHHHHHHHHHHHcCCCCCC--CCCCCCccccc--------------------cCCHHHHHHHHHhCCC-----CCCC-
Confidence            369999999999999998653  34788865421                    2357889999988763     3544 


Q ss_pred             CCCCHHHHHHHHHHHhhcC
Q psy14949         84 GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        84 ~~ls~~e~~~l~~yl~sl~  102 (102)
                      ..||++|+++|++||++++
T Consensus        53 ~~ls~~ei~~l~~yl~~~~   71 (71)
T 1c75_A           53 GIAKGAEAEAVAAWLAEKK   71 (71)
T ss_dssp             CSSCHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            5579999999999999875

>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}

Probab=99.76  E-value=4.1e-19  Score=99.23  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=52.3

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      |++++|++||.++|++||+.++.+... ++.+               ..+.+.... .++.+.+..+++++...    |.
T Consensus         3 g~~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~l---------------~~p~l~~~~-~~~~~~l~~~i~~g~~~----Mp   61 (85)
T 3cu4_A            3 GSGAGGGELFATHCAGCHPQGGNTVHP-EKTL---------------ARARREANG-IRTVRDVAAYIRNPGPG----MP   61 (85)
T ss_dssp             ----CHHHHHHHHTTTTSGGGCCSSST-TCCC---------------CHHHHHHTT-CCSHHHHHHHTTSCCTT----SC
T ss_pred             ccHHHHHHHHHHHhHHhCCCCCCCCCC-CCCC---------------CchhhhhcC-CCCHHHHHHHHHcCCCC----CC
Confidence            578899999999999999987543211 1111               012222211 34678899999887632    22


Q ss_pred             CCCC-CCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPG-LRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~-~ls~~e~~~l~~yl~sl~  102 (102)
                      +|.. .||++|+++|++||+++.
T Consensus        62 ~~~~~~ls~~ei~~l~~yi~~~~   84 (85)
T 3cu4_A           62 AFGEAMIPPADALKIGEYVVASF   84 (85)
T ss_dssp             CCCTTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC
Confidence            5666 789999999999999863

>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*

Probab=99.76  E-value=4.8e-19  Score=97.86  Aligned_cols=77  Identities=18%  Similarity=0.288  Sum_probs=51.1

Q ss_pred             HhHHHHHHHhcccccCCCCCCCC-CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC-
Q psy14949          4 ENGKKIFTRACAQCHTANEGGAN-KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV-   81 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~~-~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~-   81 (102)
                      ++|+++|.. |++||+.++.+.. ..+|+|.+..       .             .+....|..|....+...+++.|| 
T Consensus         1 a~G~~ly~~-Ca~CHg~~g~g~~~~~~P~L~g~~-------~-------------~~~~~~l~~~~~g~~~~~~~~~Mp~   59 (79)
T 1c53_A            1 ADGAALYKS-CVGCHGADGSKQAMGVGHAVKGQK-------A-------------DELFKKLKGYADGSYGGEKKAVMTN   59 (79)
T ss_pred             CcHHHHHHH-HHhccCCCCCCCCCCCCCcCCCCC-------H-------------HHHHHHHHHHHcCCCCCCcccchHH
Confidence            369999998 9999999876544 4577776521       0             011233444443333333345675 


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q psy14949         82 FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl  101 (102)
                      |...||++|+++|++||++|
T Consensus        60 ~~~~Ls~~ei~~l~~Yl~sl   79 (79)
T 1c53_A           60 LVKRYSDEEMKAMADYMSKL   79 (79)
T ss_pred             HHhhCCHHHHHHHHHHHHhC
Confidence            66678999999999999986

>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*

Probab=99.76  E-value=5.3e-19  Score=97.95  Aligned_cols=79  Identities=27%  Similarity=0.446  Sum_probs=58.3

Q ss_pred             hHHHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC-CccCC
Q psy14949          5 NGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG-TKMVF   82 (102)
Q Consensus         5 ~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~~   82 (102)
                      +|++||.+ +|++||+.++.+   .+|+|.++..+..+.               ..+.++|..+|+++.....+ ..||.
T Consensus         2 ~G~~l~~~~~C~~CHg~~g~g---~gP~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~   63 (82)
T 1cch_A            2 DGEALFKSKPCAACHSVDTKM---VGPALKEVAAKNAGV---------------EGAADTLALHIKNGSQGVWGPIPMPP   63 (82)
T ss_dssp             CSHHHHHHSTHHHHSCSSSCS---SSCCHHHHHHHSSSC---------------GGGHHHHHHHHHTCCCSSSSSCCCCC
T ss_pred             cHHHHHHhCCChhhcCCCCCC---CCcChHHHHHHcCCC---------------chHHHHHHHHhhcCCCCCCCCCCCCC
Confidence            68999996 799999988543   588887765443211               11367899999998754332 45764


Q ss_pred             CCCCCHHHHHHHHHHHhhcC
Q psy14949         83 PGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        83 ~~~ls~~e~~~l~~yl~sl~  102 (102)
                      . .||++|+++|++||++|+
T Consensus        64 ~-~ls~~ei~~l~~yl~~l~   82 (82)
T 1cch_A           64 N-PVTEEEAKILAEWVLSLK   82 (82)
T ss_dssp             C-SCCHHHHHHHHHHHHHCC
T ss_pred             C-CCCHHHHHHHHHHHHhcC
Confidence            4 679999999999999985

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}

Probab=99.75  E-value=1.3e-18  Score=106.03  Aligned_cols=83  Identities=28%  Similarity=0.400  Sum_probs=63.8

Q ss_pred             cHHhHHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCC-c
Q psy14949          2 SVENGKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGT-K   79 (102)
Q Consensus         2 d~~~G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~   79 (102)
                      ++++|+++|+ .+|++||+.++.| ...+|+|.++..+...               ...+.++|..++++|....+++ .
T Consensus        48 ~~~~G~~l~~~~~C~~CH~~~g~g-~~~gP~L~~~~~~~~~---------------~~~~~~~l~~~i~~~~~~~~g~~~  111 (146)
T 3o0r_C           48 AVVRGKLVWEQNNCVGCHTLLGEG-AYFAPELGNVVGRRGG---------------EEGFNTFLQAWMKIQPLNVPGRRA  111 (146)
T ss_dssp             HHHHHHHHHHHHTGGGTSEETTEE-CSSSCBCSSGGGGTTH---------------HHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred             HHHHHHHHHHhCCCcccCCCcCCC-CCCCCCchhhhhhccc---------------ccchHHHHHHHHhCcccCCCCCCC
Confidence            4678999999 5699999998654 4678999887644321               0123578999999988777775 6


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhc
Q psy14949         80 MVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        80 m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      ||... ||++|+++|++||+++
T Consensus       112 Mp~~~-Ls~~ei~~l~ayl~~l  132 (146)
T 3o0r_C          112 MPQFH-LSEGQVDDLAEFLKWS  132 (146)
T ss_dssp             CCCCC-CCHHHHHHHHHHHHHH
T ss_pred             CCCCC-cCHHHHHHHHHHHHHh
Confidence            87555 6999999999999875

>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*

Probab=99.75  E-value=9.2e-19  Score=97.05  Aligned_cols=80  Identities=18%  Similarity=0.288  Sum_probs=57.7

Q ss_pred             HhHHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC-CCccC
Q psy14949          4 ENGKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP-GTKMV   81 (102)
Q Consensus         4 ~~G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~m~   81 (102)
                      ++|++||. .+|++||+.++.+   .+|.|..+..+..+.               .++.++|..+|+++..... .+.||
T Consensus         1 ~~G~~l~~~~~C~~CHg~~g~g---~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp   62 (82)
T 2exv_A            1 EDPEVLAKNKGCVACHAIDTKM---VGPAYKDVAAKFAGQ---------------AGAEAELAQRIKNGSQGVWGPIPMP   62 (82)
T ss_dssp             CCHHHHHHHTTGGGTCCSSSCC---SSCCHHHHHHHHTTC---------------TTHHHHHHHHHHHCBSSSSSSSCBC
T ss_pred             CcHHHHHHhCCchhhcCCCCCC---CCcCHHHHHHHhcCC---------------cchHHHHHHHHHcCCCCCCCCCCCC
Confidence            36999998 5799999988643   578777654332211               1247889999998875332 34576


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .. .||++|+++|++||++|+
T Consensus        63 ~~-~ls~~ei~~l~~yl~~lk   82 (82)
T 2exv_A           63 PN-AVSDDEAQTLAKWVLSQK   82 (82)
T ss_dssp             CC-CCCHHHHHHHHHHHHTCC
T ss_pred             CC-CCCHHHHHHHHHHHHhCC
Confidence            44 569999999999999985

>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*

Probab=99.75  E-value=2.9e-18  Score=95.04  Aligned_cols=72  Identities=24%  Similarity=0.456  Sum_probs=54.9

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|+.||..+|++||+.++    ..+|+|.+.                      .++.++|..+|+++...    |+
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~g----g~~P~L~~~----------------------~~~~~~l~~~i~~g~~~----Mp   51 (80)
T 1wve_C            2 SQWGSGKNLYDKVCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFRA----MP   51 (80)
T ss_dssp             CCSSSHHHHHHHTTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBTT----BC
T ss_pred             ccHHHHHHHHHHHHHHhCCCCC----CCCCCCCCC----------------------CCCHHHHHHHHHhCcCC----CC
Confidence            5788999999999999999762    257877641                      12577899999887632    22


Q ss_pred             CCC-CCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFP-GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~-~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|. ..||++|+++|++||++++
T Consensus        52 ~~~~~~ls~~ei~~l~~yl~~~~   74 (80)
T 1wve_C           52 AFPASYVDDESLTQVAEYLSSLP   74 (80)
T ss_dssp             CCCTTTSCHHHHHHHHHHHHHSC
T ss_pred             CCcccCCCHHHHHHHHHHHHHCc
Confidence            553 5679999999999999874

>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*

Probab=99.75  E-value=1.7e-18  Score=96.49  Aligned_cols=80  Identities=19%  Similarity=0.216  Sum_probs=55.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|++||+++|++||+.++.+ ...+|.|....               +... ...+.+.+...++++...    |+
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~~~~-~~~~p~l~~~~---------------~~~~-~~~~~~~~~~~i~~g~~~----Mp   60 (86)
T 3ph2_B            2 ADLATGAKVFSANCAACHAGGINL-VNAEKTLKKEA---------------LEKF-GMNSIVAITTVVTNGKAG----MP   60 (86)
T ss_dssp             CCHHHHHHHHHHHTHHHHCSSSCT-TCSSSSCCHHH---------------HHHT-TCCSHHHHHHHHHHCBTT----BC
T ss_pred             ccHHHHHHHHHHHhHHhCCCCCCC-CCCCCccChhh---------------HHhc-cCCCHHHHHHHHHhCCCC----CC
Confidence            588999999999999999976532 33355554311               0000 123577888889887632    22


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++|+++|++||+++
T Consensus        61 ~~~~~ls~~ei~~l~~yl~~~   81 (86)
T 3ph2_B           61 AFKGRLTDDQIAAVAAYVLDQ   81 (86)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHH
T ss_pred             CcccCCCHHHHHHHHHHHHHh
Confidence            566678999999999999986

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1

Probab=99.75  E-value=5e-19  Score=107.13  Aligned_cols=85  Identities=27%  Similarity=0.347  Sum_probs=60.4

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC----
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG----   77 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----   77 (102)
                      |+++|++||.++|++||+ .  +...+||+|. + +     .+.|.++     ....|+.+.|..||++|+...++    
T Consensus        25 d~~~G~~lf~~~Ca~CH~-~--g~~~~gP~L~-l-g-----~~~~~~s-----~~~~~~~~~L~~~l~~p~~~~~~~~~~   89 (135)
T 1e29_A           25 QFTNGQKIFVDTCTQCHL-Q--GKTKTNNNVS-L-G-----LADLAGA-----EPRRDNVLALVEFLKNPKSYDGEDDYS   89 (135)
T ss_dssp             HHHHHHHHHHHHTHHHHG-G--GCBSSSSSCS-S-S-----HHHHHTS-----SSCCSSHHHHHHHHHSCBCTTSCSBCT
T ss_pred             cHHHHHHHHHhHHHHhcC-C--CCCCCCCCce-e-c-----ccccccc-----ccccCCHHHHHHHHhChhhccCccccc
Confidence            578999999999999999 3  3566789887 3 2     1222111     12248999999999998764332    


Q ss_pred             ---------CccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         78 ---------TKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        78 ---------~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                               .+||....||++|+++|++||.++
T Consensus        90 ~~~p~~~~~~~mp~~~~Lsd~ei~~laaYl~~~  122 (135)
T 1e29_A           90 ELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIA  122 (135)
T ss_dssp             TTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred             cccccccchhcccccccCCHHHHHHHHHHHHhc
Confidence                     235433457999999999999875

>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}

Probab=99.75  E-value=4.1e-19  Score=102.48  Aligned_cols=81  Identities=25%  Similarity=0.326  Sum_probs=54.7

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|+++|+ +|++||+.++.+....+|+|.+..       .             .+..+.|..+...++.......|
T Consensus        22 ~~~~~G~~l~~-~C~~CHg~~g~g~~~~~p~L~g~~-------~-------------~~~~~~l~~~~~g~~~~~~~~~M   80 (103)
T 2zzs_A           22 GDAAAGQAKAA-VCAACHGADGNATIPGYPNLKGQN-------E-------------QYIVSSIKAYKNKERSGGLAAVM   80 (103)
T ss_dssp             CCHHHHHHHTT-TTHHHHCTTSCCCSTTCCCCTTCC-------H-------------HHHHHHHHHHHTTCBCSTTHHHH
T ss_pred             CCHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCCC-------H-------------HHHHHHHHHHHcCCCCCCcccch
Confidence            47889999999 999999998876556678876521       0             11233444444433321111267


Q ss_pred             C-CCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 V-FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~-~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      | |...||++|+++|++||++++
T Consensus        81 p~~~~~ls~~ei~~l~~yl~~l~  103 (103)
T 2zzs_A           81 QAQASLLSDDDIANLAAYYSSLK  103 (103)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHC-
T ss_pred             HHHHhhCCHHHHHHHHHHHHhCC
Confidence            5 656779999999999999975

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1

Probab=99.74  E-value=2.1e-18  Score=96.63  Aligned_cols=82  Identities=20%  Similarity=0.313  Sum_probs=54.7

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||+++|++||+.++   ...+|.+........    .|.        .-..+.+.|...++++...||    
T Consensus         1 gd~~~G~~l~~~~C~~CHg~~g---~~~~p~~~~~~~~~~----~~l--------~~~~~~~~l~~~i~~g~~~Mp----   61 (88)
T 3dmi_A            1 GDVGAGEQIFNANCAACHAGGQ---NVIMPEKTLEKEALD----QYL--------AGGRTEKSIISQVTGGKNAMP----   61 (88)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGC---CSSSTTSCSSHHHHH----HHS--------TTCSSHHHHHHHHHHCBTTBC----
T ss_pred             CcHHHHHHHHHHHHHHhCCCCC---CCcCCCCCCCHHHHH----HHH--------hcCCCHHHHHHHHHcCcCCCC----
Confidence            6899999999999999999553   334555442211000    000        001256788888888763222    


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      ++...||++|+++|++||+++
T Consensus        62 ~~~~~ls~~ei~~l~~yl~~~   82 (88)
T 3dmi_A           62 AFGGRLSDEEIANVAAYVLAS   82 (88)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHH
Confidence            566678999999999999986

>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*

Probab=99.74  E-value=1e-18  Score=97.26  Aligned_cols=79  Identities=25%  Similarity=0.419  Sum_probs=54.6

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +++++|++||..+|++||+.++.+.   +|.+...             .+.+... ..++.+.|..+++++.     ..|
T Consensus         1 ~~~~~G~~l~~~~C~~CHg~~g~g~---~~~~~~~-------------~~~l~~~-~~~~~~~l~~~i~~g~-----~~M   58 (85)
T 1gdv_A            1 ADLDNGEKVFSANCAACHAGGNNAI---MPDKTLK-------------KDVLEAN-SMNTIDAITYQVQNGK-----NAM   58 (85)
T ss_dssp             CHHHHHHHHHHHHTHHHHGGGCCSS---STTSCCC-------------HHHHHHT-TCCSHHHHHHHHHHCB-----TTB
T ss_pred             CcHHHHHHHHHHhhHhhCCCCcCCC---CCCCCCC-------------cHHHHHc-cCCCHHHHHHHHHhCc-----CCC
Confidence            5789999999999999999885432   2322111             1122111 1345788889998875     334


Q ss_pred             -CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 -VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 -~~~~~ls~~e~~~l~~yl~sl  101 (102)
                       +|...||++|+++|++||+++
T Consensus        59 p~~~~~ls~~ei~~l~~yl~~~   80 (85)
T 1gdv_A           59 PAFGGRLVDEDIEDAANYVLSQ   80 (85)
T ss_dssp             CCCTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHH
Confidence             566678999999999999986

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1

Probab=99.73  E-value=6.6e-18  Score=100.75  Aligned_cols=85  Identities=19%  Similarity=0.279  Sum_probs=59.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC--------
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK--------   73 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------   73 (102)
                      ++++|++||+++|++||+.++   ...+|+|....            .......+..|+.+.|..+|+++..        
T Consensus        23 ~~~~G~~lf~~~Ca~CHg~~g---~~~gP~l~~~~------------~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~   87 (129)
T 1f1c_A           23 EIKKGQQVFNAACAQCHALGV---TRTNPDVNLSP------------EALALATPPRDNIAALVDYIKNPTTYDGFVEIS   87 (129)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGC---CTTCSSSCSSH------------HHHHTSSSCCCSHHHHHHHHHSCBCTTSCSBCT
T ss_pred             cHHHHHHHHHhhhHHhcCCCC---CCCCCCcccCH------------HHHHhcCCccchHHHHHHHHhCCcccccchhHh
Confidence            567999999999999999753   34577765311            0000111235678899999999864        


Q ss_pred             -----CCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         74 -----YIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        74 -----~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                           ..+...||....||++|+++|++||+++
T Consensus        88 ~~~~~~~~~~~Mp~~~~Ls~~ei~~l~~Yl~~l  120 (129)
T 1f1c_A           88 ELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQ  120 (129)
T ss_dssp             TTSCSTTCTTTCGGGSSCCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence                 2344567532567999999999999886

>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*

Probab=99.73  E-value=1.9e-17  Score=95.53  Aligned_cols=84  Identities=20%  Similarity=0.358  Sum_probs=57.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCC--
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGT--   78 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--   78 (102)
                      +++++|++||..+|++||+.++.+. ..++.+               +.+.+...+ .++.+.|..+|+++...+|..  
T Consensus         3 ~~~~~G~~l~~~~Ca~CHg~~g~g~-~~g~~~---------------~~p~l~~~~-~~~~~~l~~~i~~g~~~Mp~~~~   65 (105)
T 2ce0_A            3 LDIQRGATLFNRACAACHDTGGNII-QPGATL---------------FTKDLERNG-VDTEEEIYRVTYFGKGRMPGFGE   65 (105)
T ss_dssp             CCHHHHHHHHHHHTTTTSGGGCCSS-STTCCS---------------SHHHHHHTT-CCSHHHHHHHHHHCBTTBCBCBT
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCCcC-CCCccc---------------CCcchhhcC-CCCHHHHHHHHHhCcCCCCcccc
Confidence            4788999999999999999886532 123221               112222111 146778999998876555532  


Q ss_pred             -----cc-CCCCCCCHHHHHHHHHHHhhc
Q psy14949         79 -----KM-VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        79 -----~m-~~~~~ls~~e~~~l~~yl~sl  101 (102)
                           .| +|...||++|+++|++||+++
T Consensus        66 ~~~~~~M~~~~~~ls~~ei~~l~~yl~~~   94 (105)
T 2ce0_A           66 KCTPRGQCTFGPRLQDEEIKLLAEFVKFQ   94 (105)
T ss_dssp             TCCSGGGBCSSCCBCHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCHHHHHHHHHHHHHh
Confidence                 23 455678999999999999986

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*

Probab=99.73  E-value=1.3e-17  Score=93.50  Aligned_cols=84  Identities=24%  Similarity=0.334  Sum_probs=55.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||..+|++||+.++.+. ..+|+|.......  ....+.          ..+.+.+..++.++...||    
T Consensus         1 g~~~~G~~l~~~~C~~CHg~~g~g~-~~~P~L~~~~~~~--~l~~~~----------~~~~~~l~~~i~~g~~~Mp----   63 (89)
T 1f1f_A            1 GDVAAGASVFSANCAACHMGGRNVI-VANKTLSKSDLAK--YLKGFD----------DDAVAAVAYQVTNGKNAMP----   63 (89)
T ss_dssp             -CHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHHHHHH--HSTTTT----------TCHHHHHHHHHHHCBTTBC----
T ss_pred             CcHHHHHHHHHHHhHHhCCCCCCCC-cCCCCCCHHHHHH--HhhccC----------ccCHHHHHHHHHcCCCCCC----
Confidence            6899999999999999999986543 3577774311000  000000          1126678888887653222    


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++|+++|++||+++
T Consensus        64 ~~~~~ls~~ei~~l~~yl~~~   84 (89)
T 1f1f_A           64 GFNGRLSPLQIEDVAAYVVDQ   84 (89)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHH
Confidence            566678999999999999986

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}

Probab=99.72  E-value=1.2e-18  Score=103.38  Aligned_cols=76  Identities=26%  Similarity=0.485  Sum_probs=56.8

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC-----
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP-----   76 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----   76 (102)
                      ++++|++||.++|++||+.++   ...||+|.++..+.                    +.++|..+|++|+...+     
T Consensus        33 ~~~~G~~l~~~~C~~CH~~~g---~~~gP~l~~~~~~~--------------------~~~~l~~~i~~~~~~~~~~~~~   89 (124)
T 3cp5_A           33 LAQQGEQLFNTYCTACHRLDE---RFIGPALRDVTKRR--------------------GPVYIMNVMLNPNGMIQRHPVM   89 (124)
T ss_dssp             HHHHHHHHHHHHTTTTCCSSS---CSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHhhHHhCCCCC---CCCCCCcccccccc--------------------CHHHHHHHHhChHhhcccchhH
Confidence            467899999999999999874   34578887654322                    36788888888764211     


Q ss_pred             -------CCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         77 -------GTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        77 -------~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                             ++.||.. .||++|+++|++||+++
T Consensus        90 ~~~~~~~~~~Mp~~-~Ls~~ei~~l~~Yl~~l  120 (124)
T 3cp5_A           90 KQLVQEYGTMMTDM-ALSEEQARAILEYLRQV  120 (124)
T ss_dssp             HHHHHHHCSCCCCC-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCCC-CCCHHHHHHHHHHHHHh
Confidence                   2567754 46999999999999986

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*

Probab=99.72  E-value=2.9e-17  Score=100.41  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ++++|+.||..+|++||+.++.|  ..+|+|.+....         +.       ..++.+.|..+|++++   ++.|.+
T Consensus        45 ~~~~G~~l~~~~Ca~CHg~~g~g--~~gP~L~~~~~~---------~~-------~~~~~~~l~~~i~~G~---~~~Mp~  103 (147)
T 2gc4_D           45 ILPEAEELYAGMCSGCHGHYAEG--KIGPGLNDAYWT---------YP-------GNETDVGLFSTLYGGA---TGQMGP  103 (147)
T ss_dssp             THHHHHHHHHHHTHHHHCTTSSC--SSSCCCSSSCCS---------SG-------GGGSHHHHHHHHHHCC---STTCCC
T ss_pred             HHHHHHHHHHhhcHHhCCCCCCC--CCCCCCCccccc---------cc-------CcCCHHHHHHHHHcCC---CCCCCC
Confidence            56799999999999999998654  236888653211         10       0235778999998875   233336


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      |...||++|+++|++||++++
T Consensus       104 ~~~~ls~~ei~~l~~Yl~~l~  124 (147)
T 2gc4_D          104 MWGSLTLDEMLRTMAWVRHLY  124 (147)
T ss_dssp             CTTTSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            766789999999999999873

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}

Probab=99.72  E-value=7.8e-18  Score=94.91  Aligned_cols=86  Identities=19%  Similarity=0.304  Sum_probs=53.3

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccH-HHHHHHHhCCCCCCCCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA-STLDIYLQNPKKYIPGTK   79 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~   79 (102)
                      +|+++|++||.++|++||+.++.+... .|++....  ..    .|...    ......+. +.|..+++++...||   
T Consensus         1 ~d~~~G~~l~~~~C~~CHg~~g~g~~~-~~~~~~~~--~~----~~l~~----~~~~~~~~~~~~~~~i~~g~~~Mp---   66 (93)
T 3dr0_A            1 ADAAAGAQVFAANCAACHAGGNNAVMP-TKTLKADA--LK----TYLAG----YKDGSKSLEEAVAYQVTNGQGAMP---   66 (93)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSST-TCCSSHHH--HH----HHSTT----TTTTSSCHHHHHHHHHHHCBTTBC---
T ss_pred             CcHHHHHHHHHHHhHHhcCCCCCCCCC-CcccCcch--HH----HHHhh----cccccccHHHHHHHHHHcCCCCCC---
Confidence            689999999999999999987543211 22221100  00    00000    00001134 788888888763222   


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhc
Q psy14949         80 MVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        80 m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                       +|...||++|+++|++||+++
T Consensus        67 -~~~~~ls~~ei~~l~~yl~~l   87 (93)
T 3dr0_A           67 -AFGGRLSDADIANVAAYIADQ   87 (93)
T ss_dssp             -CCBTTBCHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCHHHHHHHHHHHHHH
Confidence             565678999999999999986

>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}

Probab=99.72  E-value=7.2e-18  Score=92.97  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             HHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC-CCCCCccCCC
Q psy14949          6 GKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK-YIPGTKMVFP   83 (102)
Q Consensus         6 G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~m~~~   83 (102)
                      |++||. .+|++||+.++.   ..||+|.++..+...                 .+.++|..+|+++.. ..+.+.||..
T Consensus         1 ~~~l~~~~~C~~CHg~~g~---~~gP~l~~~~~~~~~-----------------~~~~~l~~~i~~g~~~~~~~~~Mp~~   60 (79)
T 2d0s_A            1 DEALAKAKGCMACHAIDKK---LVGPSYKDVAKKYTE-----------------ADVPKLVEKVKKGGAGVWGPVPMPPH   60 (79)
T ss_dssp             CHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHCCG-----------------GGHHHHHHHHHHCBCSSSCSSCBCCC
T ss_pred             CHhHHhcCCChhhcCCCCC---CCCCCHHHHHHHHcc-----------------ccHHHHHHHHhcCCCCCCCCCCCCCC
Confidence            588997 479999998863   357888765433210                 035688889988864 2344557533


Q ss_pred             CCCCHHHHHHHHHHHhhcC
Q psy14949         84 GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        84 ~~ls~~e~~~l~~yl~sl~  102 (102)
                      ..||++|+++|++||++++
T Consensus        61 ~~Ls~~ei~~l~~yl~~lk   79 (79)
T 2d0s_A           61 PQVAEADIEKIVRWVLTLK   79 (79)
T ss_dssp             TTSCHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHhCc
Confidence            4679999999999999985

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*

Probab=99.71  E-value=2.7e-17  Score=105.60  Aligned_cols=84  Identities=24%  Similarity=0.428  Sum_probs=62.9

Q ss_pred             CcHHhHHHHHHH----------------hcccccCCCCCCC--CCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHH
Q psy14949          1 MSVENGKKIFTR----------------ACAQCHTANEGGA--NKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS   62 (102)
Q Consensus         1 ~d~~~G~~lf~~----------------~C~~CH~~~~~g~--~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (102)
                      ||.++|+.+|..                +|++||+.++.|.  +.+||+|.+.....                  .++.+
T Consensus        96 gd~~~Ge~lf~~G~g~~~~d~g~~ly~~~CaaCHg~dG~G~~~G~~GP~Lag~~~~r------------------~~~~~  157 (208)
T 3oa8_B           96 GSWKDGAKVAQNGRGGQFSDPPGTVSGGNCYACHQLDPKEVSYGTLGPSLVGYGRER------------------NFSAE  157 (208)
T ss_dssp             CCHHHHHHHHHCCCSSSTTSCTTCCCCCCGGGTCCCSTTCCCCCSSSCCCTTHHHHT------------------TTCHH
T ss_pred             cCHHHHHHHHhccccccccchhhhhhcccchhhCCCCCcCCCCCCcCCCcccccccc------------------cCCHH
Confidence            678899999986                7999999997653  45789998854211                  12344


Q ss_pred             HHH---HHHhCCCCCCCCCccC-CC--CCCCHHHHHHHHHHHhhcC
Q psy14949         63 TLD---IYLQNPKKYIPGTKMV-FP--GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        63 ~l~---~~~~~~~~~~~~~~m~-~~--~~ls~~e~~~l~~yl~sl~  102 (102)
                      .|.   .+|.+++...+++.|| |.  +.||++||++|++||+++.
T Consensus       158 ~L~~~~~~I~~~~~~~p~~~MP~fa~~g~LSdeEIaaLaaYL~s~~  203 (208)
T 3oa8_B          158 DAKIAFAKVYDAQASLACSSMPRFGVNGVLTEQQIKDVVAYLFDPE  203 (208)
T ss_dssp             HHHHHHHHHHCGGGTSTTCSSCCTTTTTSSCHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhhCccCCCCCCCCCcccccCCCCHHHHHHHHHHHHccC
Confidence            444   6778877777778885 65  4689999999999999863

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*

Probab=99.70  E-value=2.1e-17  Score=93.01  Aligned_cols=80  Identities=16%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhh-cCccccHHHHHHHHhCCCCCCCCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN-KGITWSASTLDIYLQNPKKYIPGTK   79 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~   79 (102)
                      +|+++|++||..+|++||+.++.+. ..+|.+..               +.+.. ..-.++.+.|...++++.     ..
T Consensus         1 ~~~~~G~~l~~~~C~~CHg~~g~g~-~~~~~l~~---------------~~~~~~~~~~~~~~~l~~~i~~g~-----~~   59 (90)
T 1cyi_A            1 ADLALGAQVFNGNCAACHMGGRNSV-MPEKTLDK---------------AALEQYLDGGFKVESIIYQVENGK-----GA   59 (90)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSH---------------HHHHHHSTTCSSHHHHHHHHHHCB-----TT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCh---------------HHHHHHhcCCCCHHHHHHHHhcCC-----CC
Confidence            6899999999999999999875432 11222210               01110 000235778888888764     33


Q ss_pred             c-CCCCCCCHHHHHHHHHHHhhc
Q psy14949         80 M-VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        80 m-~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      | +|...||++|+++|++||+++
T Consensus        60 Mp~~~~~ls~~ei~~l~~yl~~~   82 (90)
T 1cyi_A           60 MPAWADRLSEEEIQAVAEYVFKQ   82 (90)
T ss_dssp             BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred             CCcccccCCHHHHHHHHHHHHhc
Confidence            4 566678999999999999986

>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.70  E-value=9.5e-17  Score=100.62  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=58.6

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-   80 (102)
                      ++++|+.||..+|++||+.++.|.  .+|+|.+...         .+       +..++.+.|..+|++++   ++ .| 
T Consensus        53 ~~~~G~~lf~~~Ca~CHg~~g~G~--~gP~L~~~~~---------~~-------~~~~~~~~l~~~i~~G~---~g-~MP  110 (172)
T 2c8s_A           53 CLRNGESLFATSCSGCHGHLAEGK--LGPGLNDNYW---------TY-------PSNTTDVGLFATIFGGA---NG-MMG  110 (172)
T ss_dssp             HHHHHHHHHHHHTHHHHCTTSSCS--SSCCSSSSCC---------SS-------GGGGSHHHHHHHHHTCT---TS-SSC
T ss_pred             HHHHHHHHHHhhhHHhCCCCCCCC--CCCCCccccc---------cc-------cccCCHHHHHHHHHhCC---CC-CCC
Confidence            357899999999999999986543  4688875321         11       01246788999999876   23 45 


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|...||++|+++|++||++++
T Consensus       111 ~~~~~Lsd~ei~~laaYl~sl~  132 (172)
T 2c8s_A          111 PHNENLTPDEMLQTIAWIRHLY  132 (172)
T ss_dssp             SCCCCSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhc
Confidence            5766789999999999999874

>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*

Probab=99.70  E-value=5.1e-18  Score=93.99  Aligned_cols=79  Identities=18%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             HHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC-CCCccCCC
Q psy14949          6 GKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI-PGTKMVFP   83 (102)
Q Consensus         6 G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~m~~~   83 (102)
                      |++||. .+|++||+.++.   ..+|.|.++..+..+.               ..+.++|..+|+++.... +...||..
T Consensus         1 ~~~l~~~~~C~~CHg~~g~---~~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~   62 (81)
T 1a56_A            1 DADLAKKNNCIACHQVETK---VVGPALKDIAAKYADK---------------DDAATYLAGKIKGGSSGVWGQIPMPPN   62 (81)
T ss_dssp             CHHHHHHHSHHHHBCSSCB---SSSCCHHHHHHHHTTS---------------SSHHHHHHHHHHHCBSSSSSSCCBCSC
T ss_pred             CHhHHhccCchhhCCCCCC---cCCcCHHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            578998 679999998853   3578777654332211               113678999998887543 23567533


Q ss_pred             CCCCHHHHHHHHHHHhhcC
Q psy14949         84 GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        84 ~~ls~~e~~~l~~yl~sl~  102 (102)
                      ..||++|+++|++||++|+
T Consensus        63 ~~Ls~~ei~~l~~yl~~lk   81 (81)
T 1a56_A           63 VNVSDADAKALADWILTLK   81 (81)
T ss_dssp             CSSSSHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhCC
Confidence            6679999999999999875

>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*

Probab=99.69  E-value=3.2e-17  Score=91.96  Aligned_cols=80  Identities=19%  Similarity=0.310  Sum_probs=53.0

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhh-cCccccHHHHHHHHhCCCCCCCCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN-KGITWSASTLDIYLQNPKKYIPGTK   79 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~   79 (102)
                      +++++|++||..+|++||+.++.+.. ..|.+..               ..+.. ..-.++.+.|..+++++.     ..
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~g~~~~-~~~~l~~---------------~~~~~~~~~~~~~~~l~~~i~~g~-----~~   60 (89)
T 1c6r_A            2 ADLALGKQTFEANCAACHAGGNNSVI-PDHTLRK---------------AAMEQFLQGGFNLEAITYQVENGK-----GA   60 (89)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSS-TTCCSSH---------------HHHHHHSTTCSSHHHHHHHHHHCB-----TT
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCCC-CCcCcCc---------------hhHHHHhcCCCCHHHHHHHHHcCC-----CC
Confidence            57899999999999999998753221 1222211               00000 000135778888898765     23


Q ss_pred             c-CCCCCCCHHHHHHHHHHHhhc
Q psy14949         80 M-VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        80 m-~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      | +|...||++|+++|++||+++
T Consensus        61 Mp~~~~~ls~~ei~~l~~yl~~~   83 (89)
T 1c6r_A           61 MPAWSGTLDDDEIAAVAAYVYDQ   83 (89)
T ss_dssp             BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHH
Confidence            4 566678999999999999986

>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*

Probab=99.69  E-value=1.1e-17  Score=92.48  Aligned_cols=76  Identities=17%  Similarity=0.306  Sum_probs=54.7

Q ss_pred             HHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC-CccCCCCC
Q psy14949          8 KIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG-TKMVFPGL   85 (102)
Q Consensus         8 ~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~~~~~   85 (102)
                      +||. .+|++||+.++.   ..+|+|.++..+....               .++.++|..+|+++.....+ ..||.. .
T Consensus         3 ~l~~~~~C~~CHg~~g~---g~gP~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~   63 (80)
T 1ayg_A            3 QLAKQKGCMACHDLKAK---KVGPAYADVAKKYAGR---------------KDAVDYLAGKIKKGGSGVWGSVPMPPQ-N   63 (80)
T ss_dssp             TTTTSSSSGGGCCSSCC---SSSCCHHHHHHHCSSC---------------TTHHHHHHHHHHSCBCSSSCSCCBCCC-C
T ss_pred             hhHhhCCchhhcCCCCC---CCCCChHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC-C
Confidence            5776 469999999853   3688887755433211               23568899999998764433 347644 5


Q ss_pred             CCHHHHHHHHHHHhhcC
Q psy14949         86 RKEKDREDLIAYLSTLH  102 (102)
Q Consensus        86 ls~~e~~~l~~yl~sl~  102 (102)
                      ||++|+++|++||++++
T Consensus        64 Lsd~ei~~l~~yl~~lk   80 (80)
T 1ayg_A           64 VTDAEAKQLAQWILSIK   80 (80)
T ss_dssp             CCHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            79999999999999985

>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}

Probab=99.68  E-value=2.3e-17  Score=92.03  Aligned_cols=78  Identities=24%  Similarity=0.397  Sum_probs=54.7

Q ss_pred             HhHHHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC----CC
Q psy14949          4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP----GT   78 (102)
Q Consensus         4 ~~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~   78 (102)
                      ++|++||.+ +|++||+.++.   ..+|.+..+..+..+                  ..+.|..|+..++....    ..
T Consensus         1 a~G~~l~~~~~C~~CHg~~g~---g~gp~l~~l~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~~~   59 (87)
T 2zxy_A            1 ADGKAIFQQKGCGSCHQANVD---TVGPSLKKIAQAYAG------------------KEDQLIKFLKGEAPAIVDPAKEA   59 (87)
T ss_dssp             CCHHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHTTT------------------CHHHHHHHHTTCSCCSSCGGGHH
T ss_pred             CChHHHHhcCCchhhcCCCCC---CCCCChHHHHHHhcC------------------CHHHHHHHHhcccccccCCCCCC
Confidence            369999998 79999998853   347777655433210                  25678888887764322    23


Q ss_pred             ccC-C---CCCCCHHHHHHHHHHHhhcC
Q psy14949         79 KMV-F---PGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        79 ~m~-~---~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .|| |   ...||++|+++|++||++|+
T Consensus        60 ~Mp~~~~~~~~ls~~ei~~l~~yl~sl~   87 (87)
T 2zxy_A           60 IMKPQLTMLKGLSDAELKALADFILSHK   87 (87)
T ss_dssp             HHGGGGGGGGGCCHHHHHHHHHHHHTC-
T ss_pred             CCCCccccccCCCHHHHHHHHHHHHhcC
Confidence            564 5   45679999999999999985

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1

Probab=99.68  E-value=1.1e-16  Score=90.23  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=53.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhc-CccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK-GITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ++++|++||.++|++||+.++.+. ..+|.|...               .+... .-.++.+.|..+++++..    .|.
T Consensus         5 ~~~~G~~l~~~~C~~CHg~~g~g~-~~~p~l~~~---------------~~~~~~~~~~~~~~l~~~i~~g~~----~Mp   64 (91)
T 1ls9_A            5 LLADGKKVFAGNCAACHLGGNNSV-LADKTLKKD---------------AIEKYLEGGLTLEAIKYQVNNGKG----AMP   64 (91)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSHH---------------HHHHHSTTCSCHHHHHHHHHHCBT----TBC
T ss_pred             HHHHHHHHHHHHhHHhCCCCCCCC-CCCCCCCch---------------hHHHhccCCCCHHHHHHHHHcCcC----CCc
Confidence            467899999999999999875432 223444311               00000 001257788888987752    222


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++|+++|++||+++
T Consensus        65 ~~~~~ls~~ei~~l~~yl~~~   85 (91)
T 1ls9_A           65 AWADRLDEDDIEAVSNYVYDQ   85 (91)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHH
T ss_pred             chhhhCCHHHHHHHHHHHHHh
Confidence            566678999999999999986

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0

Probab=99.67  E-value=5.4e-17  Score=93.30  Aligned_cols=80  Identities=20%  Similarity=0.341  Sum_probs=52.8

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ++++|++||+.+|++||+.++.   ..+|....             ..+.+...+. .+.+.|...++++...    |.+
T Consensus        18 ~~~~G~~ly~~~Ca~CHg~~g~---~~~p~~~~-------------~~~~l~~~~~-~~~~~l~~~i~~G~~~----MP~   76 (99)
T 3dp5_A           18 PNSGGGELFATHCAGCHPQGGN---TVHPEKTL-------------ARARREANGI-RTVRDVAAYIRNPGPG----MPA   76 (99)
T ss_dssp             CCCCHHHHHHHHTTTTSGGGCC---SSSTTCCC-------------CHHHHHHTTC-CSHHHHHHHTTSCCTT----SCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCC---CCCCCCcc-------------ChHHHHhcCc-cCHHHHHHHHHcCCCC----CCC
Confidence            3567999999999999998742   22331110             0112222221 4677899999987532    225


Q ss_pred             CCC-CCCHHHHHHHHHHHhhcC
Q psy14949         82 FPG-LRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~-~ls~~e~~~l~~yl~sl~  102 (102)
                      |.. .||++||++|++||++.+
T Consensus        77 ~~~~~Lsd~ei~~l~~Yi~~~~   98 (99)
T 3dp5_A           77 FGEAMIPPADALKIGEYVVASF   98 (99)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC
Confidence            766 689999999999998753

>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}

Probab=99.67  E-value=2.1e-16  Score=98.82  Aligned_cols=79  Identities=20%  Similarity=0.266  Sum_probs=58.9

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-   80 (102)
                      ++++|++||..+|++||+.++.|  ..+|+|.+.....         .       ..++.+.|..+|++++.    ..| 
T Consensus        47 ~~~~G~~lf~~~Ca~CHg~~g~G--~~gP~L~~~~~~~---------~-------~~~~~~~l~~~i~~G~~----~~Mp  104 (170)
T 2d0w_A           47 CLPKGEEIYLESCSGCHGHIGEG--KVGPGLNDSYWTY---------P-------KNTTDKGLFETIFGGAN----GMMG  104 (170)
T ss_dssp             GHHHHHHHHHHHTHHHHCTTSCC--SSSCCSSSSCCSS---------G-------GGGSHHHHHHHHHHCCS----TTCC
T ss_pred             HHHHHHHHHHhhhHHhCCCCCCC--CCCCCCccchhhc---------c-------ccCCHHHHHHHHHcCCC----CCCC
Confidence            46789999999999999998654  3468887642111         0       13467889999998762    245 


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|...||++|+++|++||++++
T Consensus       105 ~~~~~Ls~~ei~~l~aYl~sl~  126 (170)
T 2d0w_A          105 PHGQDLELDNMLKLIAWIRHIQ  126 (170)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcc
Confidence            5766789999999999999874

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}

Probab=99.67  E-value=1.3e-17  Score=93.43  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=51.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ++++.|++||.++|++||+.++.|.. ..|++.+.             ...+     ..+.+.+...++++..     .|
T Consensus         7 ~~~~~G~~l~~~~C~~CHg~~~~g~~-~~~~l~~~-------------~~~~-----~~~~~~~~~~i~~G~~-----~M   62 (87)
T 2zon_G            7 QLDPAGEKLYRSACVVCHASGVANAP-KLGDKQAW-------------APFL-----AQGADALLATVLKGKG-----AM   62 (87)
T ss_dssp             CCCHHHHHHHHHTTHHHHTTTGGGCC-CTTCHHHH-------------HHHH-----HHCHHHHHHHHHHCBT-----TB
T ss_pred             hhhhHHHHHHHHHhHHHcCCCCCCCC-CCCCHHHH-------------HHHH-----hcCHHHHHHHHHcCcC-----CC
Confidence            46789999999999999998854321 12222210             0000     1135667777777653     34


Q ss_pred             -CCCC-CCCHHHHHHHHHHHhhcC
Q psy14949         81 -VFPG-LRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 -~~~~-~ls~~e~~~l~~yl~sl~  102 (102)
                       +|.. .||++|+++|++||++++
T Consensus        63 p~~~~~~ls~~ei~~l~~yl~~~~   86 (87)
T 2zon_G           63 PPRGGTAADEATLRAAVAYMMDAA   86 (87)
T ss_dssp             CGGGGCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhc
Confidence             5655 679999999999999864

>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*

Probab=99.64  E-value=7.7e-17  Score=89.42  Aligned_cols=78  Identities=15%  Similarity=0.297  Sum_probs=49.5

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      +++.|++||..+|++||+.++.|    +|.+.....          +.+.+.     .+.+.|...++++...||    +
T Consensus         2 ~~~~G~~ly~~~Ca~CHg~~~~g----~p~~~~~~~----------~~~~l~-----~~~~~l~~~i~~G~~~Mp----~   58 (81)
T 1kx2_A            2 DLQDAEAIYNKACTVCHSMGVAG----APKSHNTAD----------WEPRLA-----KGVDNLVKSVKTGLNAMP----P   58 (81)
T ss_dssp             CCSCHHHHHHHSTTSSTTTTGGG----CCCTTCSTT----------THHHHT-----TCSTTHHHHHHHTCTTSC----G
T ss_pred             ccccHHHHHHHHHHHHcCCCCCC----CCCCCChhh----------hhhhhh-----cCHHHHHHHHHhCcCCCC----C
Confidence            46789999999999999976432    344433211          011111     023456666776653222    4


Q ss_pred             CCC--CCCHHHHHHHHHHHhhcC
Q psy14949         82 FPG--LRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~--~ls~~e~~~l~~yl~sl~  102 (102)
                      |..  .||++|+++|++||++++
T Consensus        59 ~~~~~~Lsd~ei~~l~~Yi~~~~   81 (81)
T 1kx2_A           59 GGMCTDCTDEDYKAAIEFMSKAK   81 (81)
T ss_dssp             GGGCSSCCHHHHHHHHHHHTSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcC
Confidence            533  679999999999999875

>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*

Probab=99.64  E-value=5.5e-17  Score=97.46  Aligned_cols=82  Identities=23%  Similarity=0.285  Sum_probs=56.5

Q ss_pred             HhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC-------CC
Q psy14949          4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY-------IP   76 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~   76 (102)
                      ++|+.||.. |++||+.++.|....+|+|.+......               ....+.++|...|.++...       ..
T Consensus         2 ~~G~~ly~~-Ca~CHg~~g~G~~~~~P~L~~~~~~~~---------------~~~~~~~~l~~~i~~g~~g~~~~~g~~~   65 (131)
T 1c52_A            2 ADGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEIL---------------AKEGGREYLILVLLYGLQGQIEVKGMKY   65 (131)
T ss_dssp             CCHHHHTHH-HHHHHCTTSCCBTTTBCCCTTHHHHHH---------------TSTTHHHHHHHHHHHCEEEEEEETTEEE
T ss_pred             CcHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCccccc---------------cccCCHHHHHHHHHhcccccccccCCcc
Confidence            369999999 999999997765456777766321000               0012467888888876521       11


Q ss_pred             CCccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949         77 GTKMV-FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        77 ~~~m~-~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ...|| |. .||++||++|++||++++
T Consensus        66 ~~~MP~~~-~Lsd~ei~~l~~Yl~~~~   91 (131)
T 1c52_A           66 NGVMSSFA-QLKDEEIAAVLNHIATAW   91 (131)
T ss_dssp             EEEECCCT-TSCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcc-cCCHHHHHHHHHHHHHHc
Confidence            34565 55 779999999999999874

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1

Probab=99.61  E-value=4.5e-16  Score=96.55  Aligned_cols=83  Identities=23%  Similarity=0.259  Sum_probs=52.6

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhc-CccccHHHHHHHHhCCCCC------
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK-GITWSASTLDIYLQNPKKY------   74 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~------   74 (102)
                      ++++|++||..+|++||+.++.+   .+|.....             .+.+... ....+.+.|..++++++.+      
T Consensus        51 ~~~~G~~lf~~~Ca~CHg~~g~g---~~p~~~l~-------------~~~l~g~~p~~~~~~~l~~~l~~~~~~~g~~~~  114 (163)
T 1w5c_T           51 QYLEGKRLFQYACASCHVGGITK---TNPSLDLR-------------TETLALATPPRDNIEGLVDYMKNPTTYDGEQEI  114 (163)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCS---SSTTSCCC-------------HHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBC
T ss_pred             HHHHHHHHHHHhhHHhCCCCCCC---CCCCcCCC-------------chhhccCCCCcccHHHHHHHHhCccccccchhh
Confidence            46789999999999999977533   22321100             0011000 0022467899999987541      


Q ss_pred             -------CCCCccC-CCCCCCHHHHHHHHHHHhhc
Q psy14949         75 -------IPGTKMV-FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        75 -------~~~~~m~-~~~~ls~~e~~~l~~yl~sl  101 (102)
                             .....|| | ..||++|+++|++||+++
T Consensus       115 ~~~~~~~~~~~~Mp~~-~~Lsd~ei~~laaYl~sl  148 (163)
T 1w5c_T          115 AEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVE  148 (163)
T ss_dssp             TTTSCCSTTTTTSGGG-TTCCHHHHHHHHHHHHHH
T ss_pred             hhccccccccCcCCCC-CCCCHHHHHHHHHHHHHc
Confidence                   1124565 5 567999999999999886

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}

Probab=99.40  E-value=5.1e-17  Score=111.11  Aligned_cols=87  Identities=29%  Similarity=0.514  Sum_probs=66.7

Q ss_pred             HhHHHHHHHhcccccCCCCCCC-CCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC-
Q psy14949          4 ENGKKIFTRACAQCHTANEGGA-NKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV-   81 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~-~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~-   81 (102)
                      ++|+++|+++|++||+.++.|. ...+|+|.++..+.... .+          ...++.++|..++++|+...+++.|| 
T Consensus       237 ~~G~~lf~~~Ca~CHg~~g~G~~~~~gP~L~gi~~r~~~~-~G----------~~~~~~~~L~~~I~~g~~~~~~~~MP~  305 (337)
T 2yev_B          237 ERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLG-AG----------IVENTPENLKAWIRDPAGMKPGVKMPG  305 (337)
Confidence            6899999999999999987643 35789998865443211 00          01346789999999998777788886 


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      + ..||++|+++|++||++|+
T Consensus       306 ~-~~LsdeEi~aL~aYL~sL~  325 (337)
T 2yev_B          306 F-PQLSEEDLDALVRYLEGLK  325 (337)
Confidence            6 6679999999999999874

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=99.60  E-value=4.7e-16  Score=97.99  Aligned_cols=81  Identities=28%  Similarity=0.411  Sum_probs=56.9

Q ss_pred             cHHhHHHHHHH--------hcccccCCCCCCCCC-CCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949          2 SVENGKKIFTR--------ACAQCHTANEGGANK-VGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK   72 (102)
Q Consensus         2 d~~~G~~lf~~--------~C~~CH~~~~~g~~~-~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (102)
                      ++++|++||..        +|++||+.++.|... .+|+|.+..                    ..|..+.|..|....+
T Consensus        99 ~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g~~~~~~P~L~g~~--------------------~~~~~~~l~~~~~g~~  158 (190)
T 1m70_A           99 LAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQH--------------------AAYTAKQLTDFREGNR  158 (190)
T ss_dssp             HHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGGTBCCCTTCC--------------------HHHHHHHHHHHHHTSC
T ss_pred             chhhHHHHHhCCCcccCCcchhhcCCCCCCCCCCCCCCCcCCCC--------------------HHHHHHHHHHHHhCCC
Confidence            35789999998        899999998765433 467776532                    1223456666665444


Q ss_pred             CCCCCC-ccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949         73 KYIPGT-KMV-FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        73 ~~~~~~-~m~-~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ...+.. .|| |...||++|+++|++||++|+
T Consensus       159 ~~~~~~~~Mp~~~~~Ls~~ei~~l~~Yl~sl~  190 (190)
T 1m70_A          159 TNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH  190 (190)
T ss_dssp             CTTTTTCHHHHHHTTCCHHHHHHHHHHHHTCC
T ss_pred             CCCCccccHHHHHHhCCHHHHHHHHHHHHhCc
Confidence            333333 675 666789999999999999985

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.60  E-value=1.7e-15  Score=102.48  Aligned_cols=80  Identities=20%  Similarity=0.307  Sum_probs=59.0

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCC-CCCccC-CcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCc
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKV-GPNLFG-VVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTK   79 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~-gp~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   79 (102)
                      ++++|+++|..+|++||+.++.|.... +|+|.+ .....                  ..+.+.|.+.+++++   ++.|
T Consensus       221 ~~~~G~~lf~~~Ca~CHg~~g~G~~~~~~P~L~~~~~~~~------------------~~~~~~l~~~i~~g~---~g~M  279 (311)
T 3mk7_C          221 DLSAGKNVYAQTCAVCHGQGGEGMAALGAPKLNSAAGWIY------------------GSSLGQLQQTIRHGR---NGQM  279 (311)
T ss_dssp             CHHHHHHHHHHTTHHHHCTTSCCBTTTTBCCSSCGGGCSS------------------CCSHHHHHHHHHHCB---CCEE
T ss_pred             cchhhHHHHhhhHHhcCCCCCCCCcccCCCCCCcchhhhc------------------cCCHHHHHHHHHhCc---cccC
Confidence            567899999999999999997665444 688876 21110                  114678888888875   2333


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         80 MVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        80 m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +++...||++|+++|++||++|+
T Consensus       280 P~~~~~Ls~~ei~~laaYl~sl~  302 (311)
T 3mk7_C          280 PAQQQYLGDDKVHLLAAYVYSLS  302 (311)
T ss_dssp             CCCTTTTHHHHHHHHHHHHHHHC
T ss_pred             cccccCCCHHHHHHHHHHHHHcC
Confidence            35767789999999999999874

>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1

Probab=99.59  E-value=3.7e-16  Score=87.19  Aligned_cols=79  Identities=11%  Similarity=0.081  Sum_probs=47.5

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      .+..|++||..+|++||+.++.|    +|.+......          .+.+..   ....+.+...+.++...    |++
T Consensus         3 ~~~~G~~ly~~~Ca~CHg~~~~G----~p~~~~~~~~----------~~~l~~---~~~~~~l~~~i~~G~~~----MP~   61 (83)
T 1cc5_A            3 GARSGDDVVAKYCNACHGTGLLN----APKVGDSAAW----------KTRADA---KGGLDGLLAQSLSGLNA----MPP   61 (83)
T ss_dssp             CSSCSHHHHHHTTHHHHTTTTTT----CCCTTCHHHH----------HHHHHH---HTSSTTTHHHHHHCBTT----BCS
T ss_pred             hhHHHHHHHHHHHHHHCcCCCCC----CCCCCCHHHH----------HHHhhc---ccCHHHHHHHHHcCccC----CCC
Confidence            45689999999999999876432    3444321100          000000   00123455666666532    225


Q ss_pred             CCC--CCCHHHHHHHHHHHhhc
Q psy14949         82 FPG--LRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~~--~ls~~e~~~l~~yl~sl  101 (102)
                      |..  .||++|+++|++||+++
T Consensus        62 ~~~~~~Lsd~ei~~v~~yi~~~   83 (83)
T 1cc5_A           62 KGTCADCSDDELKAAIGKMSGL   83 (83)
T ss_dssp             SSSCSSCCHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHhC
Confidence            655  57999999999999875

>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1

Probab=99.59  E-value=7.2e-16  Score=84.90  Aligned_cols=73  Identities=21%  Similarity=0.357  Sum_probs=49.9

Q ss_pred             hHHHHHHH----hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          5 NGKKIFTR----ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         5 ~G~~lf~~----~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      .|++||.+    +|++||+.++.+    +|.|.......              ..  ..+.+.+...++++..    .|+
T Consensus         1 ~G~~ly~~g~~~~C~~CHg~~g~g----~P~l~~~~~~~--------------~~--~~~~~~l~~~i~~G~~----~Mp   56 (78)
T 1gks_A            1 DGESIYINGTAPTCSSCHDRGVAG----APELNAPEDWA--------------DR--PSSVDELVESTLAGKG----AMP   56 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTTGGG----CCCTTCHHHHH--------------TS--CCCHHHHHHHHHHCBT----TBC
T ss_pred             CHHHHHhhccccchhhhCCCCCCC----CCCCCCHHHhh--------------hc--cCCHHHHHHHHHcCCC----CCC
Confidence            48999997    899999987542    46654321000              00  0146678888887652    233


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++||++|++||+++
T Consensus        57 ~~~~~Lsd~ei~~l~~yi~~~   77 (78)
T 1gks_A           57 AYDGRADREDLVKAIEYMLST   77 (78)
T ss_dssp             CCBTTBCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHhh
Confidence            566678999999999999985

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*

Probab=99.59  E-value=1.2e-15  Score=92.05  Aligned_cols=83  Identities=23%  Similarity=0.267  Sum_probs=52.5

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCc-cccHHHHHHHHhCCCCCC-----
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGI-TWSASTLDIYLQNPKKYI-----   75 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-----   75 (102)
                      ++++|++||..+|++||+.++.+... .|.+.               .+.+..... .++.+.|..+|++|....     
T Consensus        25 ~~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~l~---------------~~~l~~~~p~~~~~~~l~~~l~~p~~~~~~~~~   88 (137)
T 1mz4_A           25 QYLEGKRLFQYACASCHVGGITKTNP-SLDLR---------------TETLALATPPRDNIEGLVDYMKNPTTYDGEQEI   88 (137)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCTTCG-GGCCC---------------HHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBC
T ss_pred             HHHHHHHHHHhhhHHhcCCCCCCCCC-Ccccc---------------ccccccCCCchhHHHHHHHHHhCchhhcccchh
Confidence            46789999999999999987543211 11110               001111001 234778999999864321     


Q ss_pred             --------CCCccC-CCCCCCHHHHHHHHHHHhhc
Q psy14949         76 --------PGTKMV-FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        76 --------~~~~m~-~~~~ls~~e~~~l~~yl~sl  101 (102)
                              +...|| | ..||++||++|++||+++
T Consensus        89 ~~~~~~~~~~~~MP~~-~~Lsd~ei~alaaYl~~~  122 (137)
T 1mz4_A           89 AEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVE  122 (137)
T ss_dssp             TTTSCCGGGTTTSGGG-TTCCHHHHHHHHHHHHHH
T ss_pred             hhcccccccCCCCCCC-CCCCHHHHHHHHHHHHHc
Confidence                    234574 6 447999999999999875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.57  E-value=1.3e-15  Score=111.71  Aligned_cols=78  Identities=21%  Similarity=0.237  Sum_probs=61.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ++++|+++|+++|++||+.++.+....+|+|.++..                     ++.+.|..+|+++....+ .|++
T Consensus       592 ~~~~G~~l~~~~C~~CHg~~g~g~~~~~P~L~~~~~---------------------~~~~~l~~~i~~g~~~~~-~Mp~  649 (677)
T 1kb0_A          592 KVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMVR-GMPD  649 (677)
T ss_dssp             GHHHHHHHHHHHTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGGG-TCCC
T ss_pred             hHHHHHHHHhhhhhhhCCCCCcCCCCCCCCccccCc---------------------ccHHHHHHHHHcCCCCCC-CCCc
Confidence            467899999999999999998765567888876431                     246789999998875432 2335


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q psy14949         82 FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl  101 (102)
                      |...||++||++|++||++|
T Consensus       650 ~~~~ls~~ei~~l~~Yl~~l  669 (677)
T 1kb0_A          650 FTGKLSGDDVESLKAFIQGT  669 (677)
T ss_dssp             CTTTSCTTHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHhc
Confidence            77768999999999999986

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=99.55  E-value=1.5e-15  Score=95.21  Aligned_cols=76  Identities=28%  Similarity=0.431  Sum_probs=51.6

Q ss_pred             cHHhHHHHHHH--------hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC
Q psy14949          2 SVENGKKIFTR--------ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK   73 (102)
Q Consensus         2 d~~~G~~lf~~--------~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (102)
                      ++++|++||..        +|++||+.++.+ ...+|+|.+...                    .+....|..+....+ 
T Consensus        99 ~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g-~~~~P~L~~~~~--------------------~~~~~~l~~~~~g~~-  156 (183)
T 1h1o_A           99 GAKEGKAIFNQGVTNEQIPACMECHGSDGQG-AGPFPRLAGQRY--------------------GYIIQQLTYFHNGTR-  156 (183)
T ss_dssp             THHHHHHHHHHCBGGGTBCCTHHHHCTTSCC-BTTBCCCTTCCH--------------------HHHHHHHHHHHHTSS-
T ss_pred             hHHhHHHHHHcCCcccCCCcchhhCCCCCCC-CCCCCCCCCCCH--------------------HHHHHHHHHHHcCCC-
Confidence            46789999998        899999998765 445677765310                    112334444433222 


Q ss_pred             CCCCCcc-CCCCCCCHHHHHHHHHHHhhc
Q psy14949         74 YIPGTKM-VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        74 ~~~~~~m-~~~~~ls~~e~~~l~~yl~sl  101 (102)
                        ++..| +|...||++|+++|++||++|
T Consensus       157 --~~~~Mp~~~~~Ls~~ei~~l~~yl~sl  183 (183)
T 1h1o_A          157 --VNTLMNQIAKNITVAQMKDVAAYLSSL  183 (183)
T ss_dssp             --CCHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred             --CCcchHHHHHhCCHHHHHHHHHHHHhC
Confidence              22456 466667999999999999986

>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=99.55  E-value=6.9e-15  Score=94.46  Aligned_cols=86  Identities=24%  Similarity=0.302  Sum_probs=53.4

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHH-HHHHHHhCCCCCCCCCcc
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS-TLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~m   80 (102)
                      ++++|++||.++|++||+.++.| ...+|+|.+........       ......+..|... .+..+++       ..|+
T Consensus        34 ~~~~G~~Ly~~~Ca~CHG~~G~G-~~~~P~L~g~~~~l~~~-------~~~~~~g~~~~~~~~l~~~~~-------~~MP   98 (205)
T 2xts_B           34 DVATGDALFADNCASCHGDFAEG-LDSWPVLAGGDGSLTDP-------RPVKTIGSYWPYLSTVYDYVH-------RSMP   98 (205)
T ss_dssp             EHHHHHHHHHHHTHHHHCTTSSC-STTSCCCSCCTTCTTSS-------SCCCCTTTTCCCHHHHHHHHH-------HHCS
T ss_pred             hHHHHHHHHHhhhHHhCCCCCCC-CCCCCCccCCccccccc-------chhhhhccccchhHHHhccCc-------CCCC
Confidence            56899999999999999998754 33468887643221110       0011123334332 3444433       1233


Q ss_pred             -CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 -VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 -~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                       +|...||++|+++|++||++++
T Consensus        99 ~~~~~~LsdeEi~aL~aYl~sl~  121 (205)
T 2xts_B           99 FGSAQTLSVDDTYAITAFLLYSN  121 (205)
T ss_dssp             TTSCSCCCHHHHHHHHHHHHHHT
T ss_pred             cccccCCCHHHHHHHHHHHHhcc
Confidence             4556789999999999999864

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=99.50  E-value=7e-15  Score=103.27  Aligned_cols=81  Identities=15%  Similarity=0.183  Sum_probs=56.4

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC---CC--
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY---IP--   76 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~--   76 (102)
                      ++++|+++|.++|++||+.++.|....+|+|.+..         +.          ..+.+.+...++++...   ..  
T Consensus       338 ~~~~G~~ly~~~Ca~CHg~~g~g~~~~~P~L~~~~---------~~----------~~~~~~~~~~i~~G~~~~~~~~g~  398 (442)
T 2zoo_A          338 QIRFGQRVYEANCMACHQANGEGIPGAFPPLAKSD---------YL----------NNNPLLGVNAIIKGLSGPIKVNNV  398 (442)
T ss_dssp             HHHHHHHHHHHHTHHHHCTTSCCBTTTBCCCTTCH---------HH----------HHCHHHHHHHHHHCEESCEEETTE
T ss_pred             hhHHHHHHHHhhhHHhCCCCCCCCCCCCCCCCCcc---------cc----------cCCHHHHHHHHHcCccccccccCC
Confidence            35789999999999999999876555678887521         00          01345666777766531   11  


Q ss_pred             --CCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         77 --GTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        77 --~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                        ...||... ||++|+++|++||++++
T Consensus       399 ~~~~~MP~~~-Lsd~ei~~l~~Yl~~~~  425 (442)
T 2zoo_A          399 NYNGVMPAMN-LNDEDIANVITFVLNNW  425 (442)
T ss_dssp             EECCEECCCC-CCHHHHHHHHHHHHTST
T ss_pred             ccCCCCCCCC-CCHHHHHHHHHHHHHhc
Confidence              25675444 79999999999999875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.50  E-value=2.1e-14  Score=105.52  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=58.0

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-   80 (102)
                      ++++|+++|+++|+.||+.++.+ ...+|+|.+...                     ++.+.+...++++...   ..| 
T Consensus       594 ~~~~G~~ly~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~---~~Mp  648 (689)
T 1yiq_A          594 SIEAGAKLYDGYCSQCHGIHAVS-GGVLPDLRKLTP---------------------EKHQMFLGILFGGRVP---DGMP  648 (689)
T ss_dssp             HHHHHHHHHHHHTHHHHCGGGCC-CSSSCCTTSCCH---------------------HHHHTHHHHHTTTTGG---GTCC
T ss_pred             HHHHHHHHHhhhhhhhCCCCCcC-CCCCCCcccCCc---------------------CCHHHHHHHHHcCCCC---CCCC
Confidence            35789999999999999998765 556788765321                     2466788888887643   345 


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++||++|++||+++
T Consensus       649 ~~~~~ls~~ei~~l~~Yl~~~  669 (689)
T 1yiq_A          649 SFADAFTPEQVDQIHQYLIKR  669 (689)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHhc
Confidence            577778999999999999986

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.49  E-value=2e-14  Score=105.20  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ++++|+++|.++|++||+.++.+ ...+|+|.+...                     .+.+.+...++++....+ .|.+
T Consensus       579 ~~~~G~~l~~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~~~-~Mp~  635 (668)
T 1kv9_A          579 QVQAGKQLYGQFCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKPL-GMPS  635 (668)
T ss_dssp             HHHHHHHHHHHHTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGGG-TCCC
T ss_pred             HHHHHHHHHhhhhHhhCcCCCcC-CCCCCCCcCCCC---------------------CCHHHHHHHHHhCCCCCC-CCCc
Confidence            35789999999999999999765 566788876321                     135667777887764221 2335


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q psy14949         82 FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl  101 (102)
                      |...||++||++|++||+++
T Consensus       636 ~~~~ls~~ei~~l~~yl~~~  655 (668)
T 1kv9_A          636 FDDSLKPEEVEQIKLYVMSR  655 (668)
T ss_dssp             CTTTCCHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHhc
Confidence            77778999999999999986

>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.47  E-value=5.8e-14  Score=88.99  Aligned_cols=58  Identities=31%  Similarity=0.623  Sum_probs=42.5

Q ss_pred             HhHHHHHHH-hcccccC--CCCC------------------------CCCCCCCCccCCcCCcCCCCCCCccchhhhhcC
Q psy14949          4 ENGKKIFTR-ACAQCHT--ANEG------------------------GANKVGPNLFGVVGRQTGQAPGFDYTDANKNKG   56 (102)
Q Consensus         4 ~~G~~lf~~-~C~~CH~--~~~~------------------------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~   56 (102)
                      .+|+.+|.+ .|..||+  +.+.                        |...+||+|+.+                    +
T Consensus        54 ~~Gr~iy~~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~v--------------------G  113 (203)
T 3mk7_B           54 LEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARV--------------------G  113 (203)
T ss_dssp             HHHHHHHHHHTGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTC--------------------T
T ss_pred             HHHHHHHHHCChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhh--------------------h
Confidence            579999975 5999999  4432                        123345555444                    4


Q ss_pred             ccccHHHHHHHHhCCCCCCCCCccC
Q psy14949         57 ITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ..++.+++..+|.+|+...|++.||
T Consensus       114 ~R~s~~wl~~~I~dPq~v~PGS~MP  138 (203)
T 3mk7_B          114 GRYSDDWHRAHLYNPRNVVPESKMP  138 (203)
T ss_dssp             TTSCHHHHHHHHHCHHHHSTTCCCC
T ss_pred             ccCCHHHHHHHHhCccccCCCCCCC
Confidence            4456889999999999999999886

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.46  E-value=4.3e-14  Score=101.29  Aligned_cols=75  Identities=19%  Similarity=0.319  Sum_probs=55.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccC-CcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFG-VVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ++++|+++|+++|++||+.++.|  ..+|+|.. ...                    ..+.++|..+|++++   ++ .|
T Consensus        35 ~~~~G~~l~~~~Ca~CHg~~g~g--~~~p~l~~~~~~--------------------~~~~~~l~~~i~~G~---~~-~M   88 (543)
T 1nir_A           35 EFNEAKQIYFQRCAGCHGVLRKG--ATGKPLTPDITQ--------------------QRGQQYLEALITYGT---PL-GM   88 (543)
T ss_dssp             HHHHHHHHHHHHTHHHHTTTTCC--SSSSCCSHHHHH--------------------HHCHHHHHHHHHHCC---SS-SC
T ss_pred             HHHHHHHHHhhhhHhhCCCCCCC--CCCCCCcchhcc--------------------cCCHHHHHHHHHcCC---CC-CC
Confidence            35789999999999999988643  33676641 110                    124678999998875   23 56


Q ss_pred             -CCC--CCCCHHHHHHHHHHHhhcC
Q psy14949         81 -VFP--GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 -~~~--~~ls~~e~~~l~~yl~sl~  102 (102)
                       +|.  ..||++|+++|++||++++
T Consensus        89 p~~~~~~~ls~~ei~~l~~yl~~~~  113 (543)
T 1nir_A           89 PNWGSSGELSKEQITLMAKYIQHTP  113 (543)
T ss_dssp             CCSTTTTSSCHHHHHHHHHHTTSCC
T ss_pred             CCcccccCCCHHHHHHHHHHHHhcc
Confidence             465  6789999999999999864

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=99.46  E-value=6.3e-15  Score=92.32  Aligned_cols=81  Identities=15%  Similarity=0.251  Sum_probs=52.7

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCC--CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC--C
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGAN--KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP--G   77 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~--~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~   77 (102)
                      .+..|+.+|...|++||+.+|.|..  ...|.|.+...                    .+....|..|....+...+  .
T Consensus        89 ~~~~g~~~~~~~Ca~CHg~~G~G~~~~~~~P~L~gq~~--------------------~yl~~~L~~~~~g~r~~~~~~~  148 (174)
T 3vrd_A           89 LVAKGTKLHDKYCEKCHVESGKPLADQDEYHILAGQWT--------------------PYLRYAIEDFRAERRPMEKKMA  148 (174)
T ss_dssp             GHHHHHHHHHHHTTTTSGGGGCCCTTCSSCCCCTTSCH--------------------HHHHHHHHHHHTTSSCCCHHHH
T ss_pred             hhccchhhhcchhHhhcCcCCCCCCCCCCCCccCCCCH--------------------HHHHHHHHHHHcCCcCCCCccc
Confidence            3568999999999999999876532  22455544321                    1123455555443332221  1


Q ss_pred             Ccc-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         78 TKM-VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        78 ~~m-~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ..| .+...|||+||++|++||.|++
T Consensus       149 ~~M~~~a~~Lsd~eI~alaaY~~S~k  174 (174)
T 3vrd_A          149 SKLKELLKAEGEDGLDALFAFYASQQ  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhHHHHhhCCHHHHHHHHHHHHHcC
Confidence            245 4666789999999999999986

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.45  E-value=5.3e-14  Score=95.21  Aligned_cols=77  Identities=21%  Similarity=0.309  Sum_probs=55.6

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCC
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVF   82 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~   82 (102)
                      +++|+++|.++|++||+.++.|.. .+|+|.+.....                  ..+.+.|...+.+++   ++.|+++
T Consensus       132 ~~~G~~lf~~~Ca~CHg~~g~g~~-g~P~L~~~~~~~------------------g~~~~~l~~~i~~G~---~~~Mp~~  189 (311)
T 3mk7_C          132 VKMGARLFANYCSICHGSDAKGSL-GFPNLADQDWRW------------------GGDAASIKTSILNGR---IAAMPAW  189 (311)
T ss_dssp             HHHHHHHHHHHTHHHHCTTSCCBT-TBCCSSSSCCSS------------------CCSHHHHHHHHHHCE---ECCBCCC
T ss_pred             HHHHHHHHhhhHHHhCCCCCCCCC-CCCCCCCccccc------------------CCCHHHHHHHHHhCC---cCCCccc
Confidence            468999999999999999876433 257777532111                  014678889998875   2333356


Q ss_pred             CCCCCHHHHHHHHHHHhh-c
Q psy14949         83 PGLRKEKDREDLIAYLST-L  101 (102)
Q Consensus        83 ~~~ls~~e~~~l~~yl~s-l  101 (102)
                      ...||++|+++|++||++ +
T Consensus       190 ~~~Ls~~ei~~laaYl~s~l  209 (311)
T 3mk7_C          190 GQAIGEEGVKNVAAFVRKDL  209 (311)
T ss_dssp             HHHHCHHHHHHHHHHHHHTT
T ss_pred             cccCCHHHHHHHHHHHHhhc
Confidence            555799999999999998 5

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.44  E-value=8.9e-14  Score=100.45  Aligned_cols=75  Identities=20%  Similarity=0.311  Sum_probs=54.9

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC-
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV-   81 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~-   81 (102)
                      +++|++||.++|++||+.++.|  ..+|+|....               +    ...+.++|..+|+++.   ++ .|| 
T Consensus        54 ~~~G~~ly~~~Ca~CHg~~g~G--~~gp~L~~~~---------------~----~~~~~~~l~~~i~~G~---~~-~Mp~  108 (567)
T 1qks_A           54 YNEANKIYFERCAGCHGVLRKG--ATGKALTPDL---------------T----RDLGFDYLQSFITYAS---PA-GMPN  108 (567)
T ss_dssp             HHHHHHHHHHHTHHHHCTTSSC--SSSCCCCHHH---------------H----HHHCHHHHHHHHTTCC---CC-CCTT
T ss_pred             HHHHHHHHhhhhHhhCCCCCCC--CCCCCCCchh---------------h----ccCCHHHHHHHHHhCC---CC-CCCC
Confidence            5689999999999999988643  3466664210               0    0124678999998875   33 564 


Q ss_pred             CC--CCCCHHHHHHHHHHHhhcC
Q psy14949         82 FP--GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~--~~ls~~e~~~l~~yl~sl~  102 (102)
                      |.  ..||++|+++|++||++++
T Consensus       109 ~~~~~~Lsd~ei~~l~~yi~~~~  131 (567)
T 1qks_A          109 WGTSGELSAEQVDLMANYLLLDP  131 (567)
T ss_dssp             TSCCCCCCHHHHHHHHHHHHSCC
T ss_pred             ccccCCCCHHHHHHHHHHHhhcc
Confidence            65  6789999999999999864

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=99.42  E-value=2.8e-14  Score=89.31  Aligned_cols=81  Identities=14%  Similarity=0.198  Sum_probs=46.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCC-CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC-CCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGAN-KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI-PGT   78 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~-~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~   78 (102)
                      +++++|+.+| .+|++||+.++.+.. ..+|+|.+..                    ..|..+.|..++...+... ...
T Consensus         4 ~~~~~G~~l~-~~Ca~CHg~~g~g~~~~~~P~L~~~~--------------------~~~~~~~l~~~~~g~r~~~~~~~   62 (183)
T 1h1o_A            4 ADAPAPYRVS-SDCMVCHGMTGRDTLYPIVPRLAGQH--------------------KSYMEAQLKAYKDHSRADQNGEI   62 (183)
T ss_dssp             --------CG-GGTHHHHCBTTBCCSSTTSCCCTTCC--------------------HHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             ccHHHHHHHH-hHHHHhcCCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCCCCCCcch
Confidence            4678999999 899999999876543 4566665421                    1233445555544333210 023


Q ss_pred             ccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949         79 KMV-FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        79 ~m~-~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .|+ +...|+++|+++|++||+++.
T Consensus        63 ~Mp~~~~~ls~~e~~al~~yl~~~~   87 (183)
T 1h1o_A           63 YMWPVAQALDSAKITALADYFNAQK   87 (183)
T ss_dssp             HTHHHHHTCCHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhCC
Confidence            564 545679999999999999863

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=99.41  E-value=1.8e-13  Score=86.05  Aligned_cols=80  Identities=20%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC------C
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK------Y   74 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~   74 (102)
                      +|+++|++| ..+|++||+.++.+....+|+|.+..                    ..|..+.|..++.....      .
T Consensus         2 ~~~~~G~~l-~~~C~~CHg~~g~g~~~~~P~L~~~~--------------------~~~~~~~l~~~~~G~~~~~~~~~~   60 (190)
T 1m70_A            2 GDAEAGQGK-VAVCGACHGVDGNSPAPNFPKLAGQG--------------------ERYLLKQLQDIKAGSTPGAPEGVG   60 (190)
T ss_dssp             CCHHHHHTT-CGGGHHHHCTTSCCCCTTSCCCTTCC--------------------HHHHHHHHHHHHHHHSTTCCTTSS
T ss_pred             cchhHHHHH-HhHHHhhcCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCccccccccC
Confidence            588999999 67899999998765545677776531                    12345556555432210      1


Q ss_pred             CCCCccC-CCCCCCHHHHHHHHHHHhhc
Q psy14949         75 IPGTKMV-FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        75 ~~~~~m~-~~~~ls~~e~~~l~~yl~sl  101 (102)
                      .+...|+ +...|+++|+++|++||+++
T Consensus        61 ~~~~~Mp~~~~~ls~~e~~~l~~yl~~~   88 (190)
T 1m70_A           61 RKVLEMTGMLDPLSDQDLEDIAAYFSSQ   88 (190)
T ss_dssp             CCCGGGTTTTTTCCHHHHHHHHHHHHHS
T ss_pred             CCCcchHHHHHHCCHHHHHHHHHHHHhC
Confidence            2345565 66678999999999999986

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=99.40  E-value=1.7e-13  Score=85.83  Aligned_cols=70  Identities=17%  Similarity=0.299  Sum_probs=46.5

Q ss_pred             HHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC-CCCCCcc-CCCCC
Q psy14949          8 KIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK-YIPGTKM-VFPGL   85 (102)
Q Consensus         8 ~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~m-~~~~~   85 (102)
                      ++|..+|++||+.+|.+.....|+|.+.                        +.++|...|++.+. ......| ++...
T Consensus         5 ~~~a~~C~~CHg~~G~~~~~~~P~LaG~------------------------~~~~i~~~l~~~~~g~~~~~~M~~~~~~   60 (174)
T 3vrd_A            5 EMLANNCAGCHGTRGNSAGPASPSIAQM------------------------DPAVFVEVMEQFKSGEIQSTIMGRIAKG   60 (174)
T ss_dssp             HHHHGGGHHHHCGGGCCCCSSSCCCTTC------------------------CHHHHHHHHHHHHHTSSCCSSHHHHHTT
T ss_pred             HHHHhhHHHhCCCcCCCCCCCCCCcCCC------------------------CHHHHHHHHHHhhcCCccccccchhhcc
Confidence            4566799999999876655566777553                        23444444432221 1234456 56566


Q ss_pred             CCHHHHHHHHHHHhhc
Q psy14949         86 RKEKDREDLIAYLSTL  101 (102)
Q Consensus        86 ls~~e~~~l~~yl~sl  101 (102)
                      ||++||++|++||.++
T Consensus        61 Ls~~di~~la~Y~~s~   76 (174)
T 3vrd_A           61 YSTADFQKMAEYFKQQ   76 (174)
T ss_dssp             SCHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHhhhhcc
Confidence            7999999999999886

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=99.07  E-value=5.1e-10  Score=76.27  Aligned_cols=91  Identities=21%  Similarity=0.323  Sum_probs=51.7

Q ss_pred             HHhHHHHHHH-hcccccCCCCCCCCC---CC-CCc--------cCCc------------CCcCCCCCCCccchhhhhcCc
Q psy14949          3 VENGKKIFTR-ACAQCHTANEGGANK---VG-PNL--------FGVV------------GRQTGQAPGFDYTDANKNKGI   57 (102)
Q Consensus         3 ~~~G~~lf~~-~C~~CH~~~~~g~~~---~g-p~l--------~~~~------------~~~~~~~~~~~~~~~~~~~~~   57 (102)
                      ..+|++||.. +|++||+....+...   +| |..        .+..            ...+.+..+...+..+.+.|.
T Consensus       188 ~~~G~~lF~~~~Ca~CH~~~~~~~~~~~~~G~~~~~~~~~~~~~d~G~~~~t~~~~d~~~fktPsLrnV~~taPY~HdG~  267 (328)
T 1zzh_A          188 EKAGLKLFIDTGCAACHNGINIGGNGYYPFGVVEKPGAEVLPAGDKGRFAVTATADDEYVFRAGPLRNIALTAPYFHSGK  267 (328)
T ss_dssp             HHHHHHHHHHHTGGGTSCBTTTSCSCEESEEEEECCC----------CEEEEECSSTTEEEECCCCTTGGGSCSBTTTTC
T ss_pred             HHHHHHHHhcCCccccCCCcccCcchhhhcCCCCcccccccccccccchhcccchhhcCCccCcchhchhccCccccCCc
Confidence            4679999997 799999865432211   11 000        0000            011111222222333445666


Q ss_pred             cccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         58 TWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .++.+.+..+.....         +...||++|+.+|++||++|.
T Consensus       268 ~~tL~evv~~y~~~~---------~~~~Ls~~E~~~LvaFL~tLt  303 (328)
T 1zzh_A          268 VWDLREAVSVMANSQ---------LGATLDDTQVDQITAFLGTLT  303 (328)
T ss_dssp             BCCHHHHHHHHHSST---------TSCCCCHHHHHHHHHHHGGGC
T ss_pred             cCCHHHHHHHhhccc---------cCCCCCHHHHHHHHHHHHHcC
Confidence            777777777765421         123469999999999999974

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=98.99  E-value=1.3e-09  Score=74.23  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             hhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         51 ANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        51 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ++.+.|..++.+.+..+....       .+  ...||++|+.+|++||++|.
T Consensus       258 PY~HdG~~~tL~evv~~~~~~-------~~--~~~Ls~~e~~~LvAFL~sLt  300 (326)
T 1nml_A          258 PYFHSGAVWSLEEAVAVMGTA-------QL--GTELNNDEVKSIVAFLKTLT  300 (326)
T ss_dssp             SBTTTCCBCCHHHHHHHTCCT-------TT--TCCCCHHHHHHHHHHHGGGC
T ss_pred             ccccCCCcCCHHHHHHHhhhh-------cc--CCCCCHHHHHHHHHHHHHcC
Confidence            344666777777777664321       11  13469999999999999973

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=98.97  E-value=5.4e-10  Score=76.02  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             hhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         52 NKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        52 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +.+.|..++.+....+.....         +...||++|+.+|++||++|.
T Consensus       259 Y~HdG~~~tL~evv~~y~~~~---------~~~~Ls~~E~~~LvaFL~tLt  300 (323)
T 2vhd_A          259 YFHSGQVWELKDAVAIMGNAQ---------LGKQLAPDDVENIVAFLHSLS  300 (323)
T ss_dssp             BTTTTCBCCHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHHHTTC
T ss_pred             cccCCccCCHHHHHHHHhhcc---------cCCCCCHHHHHHHHHHHHHcC
Confidence            334555666666666553211         123469999999999999984

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=98.96  E-value=8.1e-10  Score=75.56  Aligned_cols=91  Identities=18%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             HHhHHHHHHH-hcccccCCCCCCCCC---CCCC---------ccCCc------------CCcCCCCCCCccchhhhhcCc
Q psy14949          3 VENGKKIFTR-ACAQCHTANEGGANK---VGPN---------LFGVV------------GRQTGQAPGFDYTDANKNKGI   57 (102)
Q Consensus         3 ~~~G~~lf~~-~C~~CH~~~~~g~~~---~gp~---------l~~~~------------~~~~~~~~~~~~~~~~~~~~~   57 (102)
                      ..+|++||.. +|++||+....++..   +|-.         ..+..            ..++.+..+...+.++.+.|.
T Consensus       199 ~~~G~~lF~~~~Ca~CH~~~~~t~~~f~~~G~~~~~~~~~~~~~D~Gr~~~t~~~~d~~~fktPsLRnV~~taPY~HdG~  278 (338)
T 2c1v_A          199 EKRGLQAFMETGCTACHYGVNFGGQDYHPFGLIAKPGAEVLPAGDTGRFEVTRTTDDEYVFRAAPLRNVALTAPYFHSGV  278 (338)
T ss_dssp             HHHHHHHHHHHTGGGTSCBTTTSCSSEEETTSSSCCCTTTSCTTCCBTHHHHCCGGGTTEEECCCCTTGGGSCSBTTTTC
T ss_pred             HHHHHHHHhCCCccccCCCcccCcchhhhcCCCCCcccccccccccchhhcCccccccccccCCcccchhcCCccccCCc
Confidence            3579999997 799999854322111   1100         00000            011112222223333446666


Q ss_pred             cccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         58 TWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .++.+.+..+....       .+  ...||++|+.+|++||++|.
T Consensus       279 ~~tL~evv~~y~~~-------~~--~~~Ls~~E~~~LvaFL~sLt  314 (338)
T 2c1v_A          279 VWELAEAVKIMSSA-------QI--GTELTDQQAEDITAFLGTLT  314 (338)
T ss_dssp             BCCHHHHHHHHHHH-------HT--CCCCCHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHhh-------cc--cCCCCHHHHHHHHHHHHHcC
Confidence            77777776665421       11  12469999999999999973

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=98.94  E-value=4.3e-10  Score=76.35  Aligned_cols=43  Identities=16%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             hhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         51 ANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        51 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .+.+.|..++.+....+...+.         +...||++|+.+|++||++|.
T Consensus       249 PY~HdG~~~tL~evv~~~~~~~---------~~~~Ls~~E~~~LvaFL~sLt  291 (320)
T 3o5c_A          249 PYFHDGSVWTLEEAVNTMADIQ---------LGQKLTEKETKEMVAFLNSLT  291 (320)
T ss_dssp             SBTTTTCBCSHHHHHHHHHHHH---------HSCCCCHHHHHHHHHHHHTTC
T ss_pred             HHHcCCCcCcHHHHHHHhcccc---------cccCCCHHHHHHHHHHHHHcC
Confidence            3345666777777776664311         123469999999999999973

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=98.91  E-value=2.1e-09  Score=72.72  Aligned_cols=40  Identities=13%  Similarity=0.105  Sum_probs=25.6

Q ss_pred             hcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         54 NKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +.|..++.+....+....         .+...||++|+.+|++||++|.
T Consensus       244 HdG~~~tL~e~v~~~~~~---------~~~~~Ls~~e~~~LvaFL~sLt  283 (308)
T 1iqc_A          244 HDGGAATLEQAVETMGRI---------QLNREFNKDEVSKIVAFLKTLT  283 (308)
T ss_dssp             TTCCBCSHHHHHHHHHHH---------HHCCCCCHHHHHHHHHHHHTTC
T ss_pred             cCCccccHHHHHHhhhcc---------ccccCCCHHHHHHHHHHHHHcC
Confidence            445555555555543311         1123469999999999999974

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=98.91  E-value=2.2e-10  Score=76.42  Aligned_cols=82  Identities=18%  Similarity=0.300  Sum_probs=47.7

Q ss_pred             HHhHHHHHHH-------hcccccCCCCCCC-CCC---CCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCC
Q psy14949          3 VENGKKIFTR-------ACAQCHTANEGGA-NKV---GPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNP   71 (102)
Q Consensus         3 ~~~G~~lf~~-------~C~~CH~~~~~g~-~~~---gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   71 (102)
                      ++.|+.||..       +|++||+.++.+. ...   .|.|....++.                  ....+.|...++..
T Consensus        53 v~~G~~lf~~~~g~n~~~Ca~CHg~~G~g~~~G~~a~yP~l~~~~g~v------------------~~L~~~I~~c~~~~  114 (275)
T 3oa8_A           53 VDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTGKV------------------MDLEQRLLWCMETI  114 (275)
T ss_dssp             HHHHHHHHTCCBTTTTBCSTTCBSSSSBTCCTTTGGGCSEEETTTTEE------------------ECHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcCCCCCCcccccCCccCCCcccChhhhCcCccccCCCH------------------HHHHHHHHHHHHcc
Confidence            5789999986       6999998765321 111   34443321110                  11233455555543


Q ss_pred             CCCCC-CCcc-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         72 KKYIP-GTKM-VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        72 ~~~~~-~~~m-~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +.... ...| ++...|+++|+.+|++|+.+|.
T Consensus       115 ~g~~~~~~~M~p~~~~Ls~~di~~laaY~asls  147 (275)
T 3oa8_A          115 QGRDTKPLVAKPFSGPGRTSDMEDLVAFIANKS  147 (275)
T ss_dssp             TCCCCHHHHHSCSCBTTBCCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCCHHHHHHHHHHHHHcC
Confidence            32111 1124 6666679999999999998863

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=98.89  E-value=2.2e-09  Score=73.43  Aligned_cols=51  Identities=14%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             CCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         42 QAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +..+...+.++.+.|..++.+++.++......       .  --||++|+.+|++||++|
T Consensus       266 sLRNVa~TaPYmHdG~~~tLeevv~~y~~~~~-------~--~~Lt~~E~~~LvAFL~tL  316 (341)
T 4aan_A          266 SLRNVAITMPYFHSGKVWKLKDAVKIMGSAQL-------G--ISITDADADKIVTFLNTL  316 (341)
T ss_dssp             CCTTGGGSCSBSTTCCBCCHHHHHHHHHHHHH-------S--CCCCHHHHHHHHHHHHTT
T ss_pred             ccccccccCCCccCCCcCCHHHHHHHHhccCc-------C--CCCCHHHHHHHHHHHHcc
Confidence            34444445555577888888877776643221       1  126999999999999997

>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}

Probab=98.85  E-value=1.7e-10  Score=65.23  Aligned_cols=20  Identities=30%  Similarity=0.732  Sum_probs=17.8

Q ss_pred             cHHhHHHHHHHhcccccCCC
Q psy14949          2 SVENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (102)
                      ++..|++||+++|.+||+.+
T Consensus        26 ~~~~g~~l~~~kC~~CHs~d   45 (92)
T 3a9f_A           26 DFDAAKKLVDVRCNKCHTLD   45 (92)
T ss_dssp             CHHHHHHHHHHHSSSSSCSG
T ss_pred             ChHhHHHHHHhHHHHhcCCc
Confidence            45789999999999999876

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=98.85  E-value=3.8e-09  Score=72.33  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=26.3

Q ss_pred             hcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         54 NKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +.|..++.+....+...+         .+...||++|+.+|++||++|.
T Consensus       283 H~G~~~tL~~~v~~~~~~---------~~~~~Ls~~E~~~LvaFL~sLt  322 (345)
T 3hq9_A          283 HSGVVWSLKEAVAVMGSA---------QFGIKLSDDESEAIAAFLGSLT  322 (345)
T ss_dssp             TTTCBCCHHHHHHHHSCG---------GGTCCCCHHHHHHHHHHHHTTC
T ss_pred             cCCccccHHHHHHHcccc---------ccccCCCHHHHHHHHHHHHHhC
Confidence            445555666655555322         1234579999999999999973

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=98.80  E-value=5.3e-10  Score=74.13  Aligned_cols=21  Identities=14%  Similarity=-0.013  Sum_probs=17.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ....||++|+++|++||.+|.
T Consensus       232 ~~~~Ls~~ei~aLaaYv~sL~  252 (264)
T 2c1d_A          232 ETFKAGSDDFKALELYVASRG  252 (264)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHcc
Confidence            345579999999999998863

>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*

Probab=98.80  E-value=3.7e-09  Score=58.37  Aligned_cols=18  Identities=28%  Similarity=0.689  Sum_probs=15.9

Q ss_pred             HhHHHHHHHhcccccCCC
Q psy14949          4 ENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~   21 (102)
                      ..|+++|+++|++||+.+
T Consensus        19 ~~G~~l~~~~C~~CH~~~   36 (81)
T 2blf_B           19 QPGFEAAQNNCAACHSVD   36 (81)
T ss_dssp             STHHHHHHHHTTSSSCTH
T ss_pred             cchHHHHHHHHHHhcCCc
Confidence            479999999999999864

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=98.79  E-value=2.6e-09  Score=70.71  Aligned_cols=83  Identities=16%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             HHhHHHHHHH-------hcccccCCCCCCCCCCCCCcc-CCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC
Q psy14949          3 VENGKKIFTR-------ACAQCHTANEGGANKVGPNLF-GVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY   74 (102)
Q Consensus         3 ~~~G~~lf~~-------~C~~CH~~~~~g~~~~gp~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   74 (102)
                      +++|++||..       .|++||+.+ .|....+|.|. ++....    +.|.     ...+..++....   +++....
T Consensus       159 ~~~G~~lF~~~~g~~~~~Ca~CHg~~-~G~~~g~~~l~~~~~~~~----p~Yr-----~~~g~~~tl~~r---i~~~~~~  225 (261)
T 1h32_A          159 WEKGREIYYTRYGQLDLSCASCHEQY-FDHYIRADHLSQGQINGF----PSYR-----LKNARLNAVHDR---FRGCIRD  225 (261)
T ss_dssp             HHHHHHHHTCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCTTC----SEEE-----TTTTEEECHHHH---HHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCCcccccCCCC-CCCCCCCCcCCCCcccCC----ccee-----ccCcchhhHHHH---HHHHHhc
Confidence            5689999987       599999875 22222233343 222111    1111     112223333332   2221111


Q ss_pred             CCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         75 IPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        75 ~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +.    .....||++|+++|++||.+|.
T Consensus       226 m~----~~~~~Ls~~ei~aLaaYl~sL~  249 (261)
T 1h32_A          226 TR----GVPFAVGSPEFVALELYVASRG  249 (261)
T ss_dssp             TT----BCCCCTTCHHHHHHHHHHHHHT
T ss_pred             cC----CCCCCCChHHHHHHHHHHHHhc
Confidence            11    2233468999999999999873

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=98.72  E-value=4.3e-09  Score=74.18  Aligned_cols=21  Identities=24%  Similarity=0.678  Sum_probs=17.9

Q ss_pred             HhHHHHHHHhcccccCCCCCC
Q psy14949          4 ENGKKIFTRACAQCHTANEGG   24 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g   24 (102)
                      +.|+.||..+|++||+.++.|
T Consensus         2 a~Gk~LF~~NCAaCHGagaqG   22 (494)
T 1jmx_A            2 EQGPSLLQNKCMGCHIPEGND   22 (494)
T ss_dssp             CCHHHHHHHHHBTTBCEEETT
T ss_pred             chhhHHHhhhhhhhcCCCccC
Confidence            469999999999999987543

>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*

Probab=98.66  E-value=6.7e-09  Score=61.19  Aligned_cols=18  Identities=28%  Similarity=0.346  Sum_probs=15.9

Q ss_pred             CCCHHHHHHHHHHHhhcC
Q psy14949         85 LRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        85 ~ls~~e~~~l~~yl~sl~  102 (102)
                      -+|++|..+|++||.+++
T Consensus       103 ~cTa~EK~D~~ayL~s~~  120 (124)
T 1e8e_A          103 DCSPSEKANFIAYLLTET  120 (124)
T ss_dssp             CCCHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            358999999999999975

>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*

Probab=98.64  E-value=5.8e-08  Score=63.54  Aligned_cols=20  Identities=30%  Similarity=0.903  Sum_probs=18.0

Q ss_pred             cHHhHHHHHHHhcccccCCC
Q psy14949          2 SVENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (102)
                      .+.+|.++|.+.|++||+.+
T Consensus        28 slqRG~qvy~~~CaaCHsl~   47 (248)
T 3cx5_D           28 SIRRGYQVYREVCAACHSLD   47 (248)
T ss_dssp             HHHHHHHHHHHTGGGTCCCT
T ss_pred             hHhhhHHHHHHhhhhccCcc
Confidence            36789999999999999987

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=98.61  E-value=3.1e-09  Score=70.87  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             HHhHHHHHH-------HhcccccCCCCCCCCC-CCCCccC
Q psy14949          3 VENGKKIFT-------RACAQCHTANEGGANK-VGPNLFG   34 (102)
Q Consensus         3 ~~~G~~lf~-------~~C~~CH~~~~~g~~~-~gp~l~~   34 (102)
                      +++|++||.       ..|++||+.+|.+... ..|.|.+
T Consensus       165 ~~~G~~lf~~r~G~~~~~Ca~CHg~~G~g~~~~~~P~L~g  204 (275)
T 3oa8_A          165 YAIGEALFFRRSSINDFSCSTCHGAAGKRIRLQALPQLDV  204 (275)
T ss_dssp             HHHHHHHHHCCBTTTTBCHHHHHSSSSCEETTEECCCCSS
T ss_pred             HHHHHHHHHhccCCCCCchHhhCCCcCCCCCccCCCcccc
Confidence            468999993       4699999988654322 3577764

>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*

Probab=98.58  E-value=3.5e-07  Score=63.24  Aligned_cols=17  Identities=29%  Similarity=0.552  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHHHHHhhc
Q psy14949         85 LRKEKDREDLIAYLSTL  101 (102)
Q Consensus        85 ~ls~~e~~~l~~yl~sl  101 (102)
                      .||++|+.+|++||++|
T Consensus       333 ~Lt~~E~~dLVAFLkTL  349 (373)
T 3sjl_A          333 MLDDGRVDALVAFLETL  349 (373)
T ss_dssp             CCCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            36999999999999997

>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*

Probab=98.58  E-value=7e-08  Score=56.08  Aligned_cols=81  Identities=20%  Similarity=0.341  Sum_probs=43.2

Q ss_pred             cHHhHHHHHHH----------hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhC-
Q psy14949          2 SVENGKKIFTR----------ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQN-   70 (102)
Q Consensus         2 d~~~G~~lf~~----------~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-   70 (102)
                      ++++|+++|.+          .|++||+.+...   .|-..++.  .-.+..+..       +....-+...+.+|+++ 
T Consensus        21 ~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p~~---~g~~~tgk--~I~p~Ap~~-------np~RftD~akvekwf~rn   88 (112)
T 1dw0_A           21 DAERGRALFLSTQTGGKPDTPSCTTCHGADVTR---AGQTRTGK--EIAPLAPSA-------TPDRFTDSARVEKWLGRN   88 (112)
T ss_dssp             CHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTS---CEECTTSC--EECCSSTTT-------STTTTCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHhhhcccCCCCCCcccccCCCCccc---CcccccCC--cccCcCCcc-------CccccCCHHHHHHHHHhh
Confidence            57899999932          499999876421   11111110  000011111       01112245566666653 


Q ss_pred             CCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         71 PKKYIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        71 ~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      -..+       +...-|.+|..++++||.++
T Consensus        89 c~~v-------~gr~cta~EK~d~l~~l~~~  112 (112)
T 1dw0_A           89 CNSV-------IGRDCTPGEKADLLAWLAAQ  112 (112)
T ss_dssp             HHHH-------HSSCCCHHHHHHHHHHHHTC
T ss_pred             hhHH-------HcccCCHHHHHHHHHHHHhC
Confidence            1111       12335899999999999875

>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...

Probab=98.56  E-value=7e-07  Score=58.28  Aligned_cols=21  Identities=24%  Similarity=0.814  Sum_probs=18.4

Q ss_pred             cHHhHHHHHHHhcccccCCCC
Q psy14949          2 SVENGKKIFTRACAQCHTANE   22 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~   22 (102)
                      .+.+|.++|.+.|++||+.+.
T Consensus        25 slqRG~qvy~~~CaaCHSl~y   45 (241)
T 1pp9_D           25 SIRRGFQVYKQVCSSCHSMDY   45 (241)
T ss_dssp             HHHHHHHHHHHTGGGTCCCTT
T ss_pred             HHhhhHHHHHHhhhhccCccc
Confidence            367899999999999999864

>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}

Probab=98.52  E-value=2.6e-07  Score=60.89  Aligned_cols=21  Identities=24%  Similarity=0.737  Sum_probs=18.2

Q ss_pred             cHHhHHHHHHHhcccccCCCC
Q psy14949          2 SVENGKKIFTRACAQCHTANE   22 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~   22 (102)
                      .+.+|.++|.+.|++||+.+.
T Consensus        46 slqRG~qVy~evCaaCHsl~~   66 (263)
T 2yiu_B           46 QLQRGLQVYTEVCSACHGLRY   66 (263)
T ss_dssp             HHHHHHHHHHHTGGGTCCCTT
T ss_pred             HHHHHHHHHHHHhhccCCccc
Confidence            357899999999999999763

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=98.42  E-value=3.4e-08  Score=65.42  Aligned_cols=17  Identities=12%  Similarity=0.190  Sum_probs=14.8

Q ss_pred             CCCHHHHHHHHHHHhhc
Q psy14949         85 LRKEKDREDLIAYLSTL  101 (102)
Q Consensus        85 ~ls~~e~~~l~~yl~sl  101 (102)
                      .++++|+++|++|++++
T Consensus       128 ~l~~~~~~alaaY~~sl  144 (264)
T 2c1d_A          128 GVTSDNMKDMLSLISLQ  144 (264)
T ss_dssp             CTTSHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            35789999999999986

>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*

Probab=98.35  E-value=6.5e-07  Score=63.09  Aligned_cols=19  Identities=37%  Similarity=0.933  Sum_probs=16.8

Q ss_pred             hHHHHHHHhcccccCCCCC
Q psy14949          5 NGKKIFTRACAQCHTANEG   23 (102)
Q Consensus         5 ~G~~lf~~~C~~CH~~~~~   23 (102)
                      .|++||+++|++||+.+.+
T Consensus         2 ~GkeLv~anCasCHsad~~   20 (489)
T 1pby_A            2 TGEEVLQNACAACHVQHED   20 (489)
T ss_dssp             CHHHHHHHTGGGTSCBCTT
T ss_pred             ChHHHHHhhhHhhcCCCcc
Confidence            5999999999999998754

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=98.22  E-value=2.3e-07  Score=61.31  Aligned_cols=17  Identities=12%  Similarity=0.174  Sum_probs=14.9

Q ss_pred             CCCHHHHHHHHHHHhhc
Q psy14949         85 LRKEKDREDLIAYLSTL  101 (102)
Q Consensus        85 ~ls~~e~~~l~~yl~sl  101 (102)
                      .++++|+++|++|+++|
T Consensus       125 ~l~~~~i~alaaY~~sl  141 (261)
T 1h32_A          125 DYIGPDMTAMVALIASV  141 (261)
T ss_dssp             CTTSHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHH
Confidence            35789999999999986

>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*

Probab=98.19  E-value=4.7e-06  Score=55.10  Aligned_cols=20  Identities=30%  Similarity=0.856  Sum_probs=17.8

Q ss_pred             cHHhHHHHHHHhcccccCCC
Q psy14949          2 SVENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (102)
                      .+.+|.++|.+.|++||+.+
T Consensus        24 sLqRG~qVy~evCaaCHsl~   43 (269)
T 2qjy_B           24 QLQRGLQVYTEVCAACHGMK   43 (269)
T ss_dssp             HHHHHHHHHHHTGGGTCCCT
T ss_pred             HHHHHHHHHHHHHhhcCCch
Confidence            36789999999999999976

>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}

Probab=97.56  E-value=3.1e-05  Score=50.96  Aligned_cols=20  Identities=20%  Similarity=0.760  Sum_probs=17.8

Q ss_pred             cHHhHHHHHHHhcccccCCC
Q psy14949          2 SVENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (102)
                      .+.+|.++|.+.|++||+.+
T Consensus        22 sLqRG~qvy~evCa~CHsl~   41 (258)
T 1zrt_D           22 QLRRGFQVYNEVCSACHGMK   41 (258)
T ss_dssp             HHHHHHHHHHHTTTTTCCCT
T ss_pred             HHHHHHHHHHHHHhhcCCch
Confidence            36789999999999999975

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=97.52  E-value=2e-05  Score=53.86  Aligned_cols=14  Identities=14%  Similarity=0.190  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHhhc
Q psy14949         88 EKDREDLIAYLSTL  101 (102)
Q Consensus        88 ~~e~~~l~~yl~sl  101 (102)
                      ++++.+|++|++++
T Consensus       164 ~~~~~Aia~y~~sL  177 (338)
T 2c1v_A          164 DNFAAAIEQFEATL  177 (338)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            77899999999986

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=97.44  E-value=2.8e-05  Score=52.88  Aligned_cols=19  Identities=42%  Similarity=0.857  Sum_probs=15.6

Q ss_pred             HHhHHHHHHHh---------cccccCCC
Q psy14949          3 VENGKKIFTRA---------CAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~~---------C~~CH~~~   21 (102)
                      ++.|+.||...         |++||..+
T Consensus        31 v~lGk~LF~d~~LS~~~~~sCasCH~~~   58 (323)
T 2vhd_A           31 RELGKKLFFDPRLSRSHVLSCNTCHNVG   58 (323)
T ss_dssp             HHHHHHHHTCGGGSSSSCCCHHHHSCGG
T ss_pred             HHHHHHHhcCccccCCCCcchhhcCCCc
Confidence            56899999754         99999864

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=97.40  E-value=0.00066  Score=46.22  Aligned_cols=14  Identities=21%  Similarity=0.161  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHhhc
Q psy14949         88 EKDREDLIAYLSTL  101 (102)
Q Consensus        88 ~~e~~~l~~yl~sl  101 (102)
                      ++++.+|++|++++
T Consensus       153 ~~~~~Aiaay~~sl  166 (328)
T 1zzh_A          153 DNFALAVEAFEATL  166 (328)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHc
Confidence            67899999999986

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=97.38  E-value=2.1e-05  Score=53.10  Aligned_cols=15  Identities=13%  Similarity=0.217  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHhhc
Q psy14949         87 KEKDREDLIAYLSTL  101 (102)
Q Consensus        87 s~~e~~~l~~yl~sl  101 (102)
                      .++++.+|++|++++
T Consensus       135 ~~~~~~Aia~y~~tl  149 (308)
T 1iqc_A          135 IDRITTAIAQFEETL  149 (308)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhh
Confidence            388999999999986

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=97.29  E-value=0.0001  Score=50.51  Aligned_cols=19  Identities=37%  Similarity=0.852  Sum_probs=15.9

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++.|+.||..         .|++||..+
T Consensus        53 v~lG~~LF~d~rLS~~~~~sCasCH~~~   80 (345)
T 3hq9_A           53 VELGKMLYFDPRLSASHLISCNTCHNVG   80 (345)
T ss_dssp             HHHHHHHHHCGGGSTTSCCCHHHHSBTT
T ss_pred             HHHHHHHhCCcccCCCCCCchhhcCChh
Confidence            5689999975         599999875

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=97.00  E-value=4.9e-05  Score=53.88  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=18.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCC
Q psy14949          2 SVENGKKIFTRACAQCHTANEG   23 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~   23 (102)
                      ++++|++||..+|++||+.++.
T Consensus        88 ~va~G~eLF~~NCAaCHG~dGk  109 (494)
T 1jmx_A           88 TVEQFDTQLSETCGRCHSGARV  109 (494)
T ss_dssp             CCCCCCHHHHHHHSSSSCSHHH
T ss_pred             hhhhHHHHHhhhhhhcCCcccC
Confidence            3457999999999999998753

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=96.91  E-value=0.0042  Score=42.18  Aligned_cols=19  Identities=42%  Similarity=0.887  Sum_probs=15.1

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++.|+.||-.         .|++||...
T Consensus        27 v~LGk~LFfD~rLS~~~~~SCasCH~p~   54 (320)
T 3o5c_A           27 VELGKMLFFEPRLSKSGFISCNSCHNLS   54 (320)
T ss_dssp             HHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred             HHHHHHHhCCcccCCCCCCCccccCCcc
Confidence            4679999963         399999765

>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}

Probab=96.65  E-value=0.0031  Score=37.88  Aligned_cols=16  Identities=25%  Similarity=0.611  Sum_probs=13.1

Q ss_pred             HHHHHHHhcccccCCC
Q psy14949          6 GKKIFTRACAQCHTAN   21 (102)
Q Consensus         6 G~~lf~~~C~~CH~~~   21 (102)
                      ++++|.+.|++||.+-
T Consensus        16 ~~~~y~~~C~~CH~a~   31 (139)
T 2fw5_A           16 TDPLTRTECSACHMAY   31 (139)
T ss_dssp             CCHHHHHHTTSSSCCC
T ss_pred             cHHHHHHHHHhccCCC
Confidence            4679999999999643

>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}

Probab=96.59  E-value=0.007  Score=35.69  Aligned_cols=16  Identities=25%  Similarity=0.611  Sum_probs=13.0

Q ss_pred             HHHHHHHhcccccCCC
Q psy14949          6 GKKIFTRACAQCHTAN   21 (102)
Q Consensus         6 G~~lf~~~C~~CH~~~   21 (102)
                      .+++|.+.|++||..-
T Consensus         5 ~~~~y~~~C~~CH~a~   20 (125)
T 2fwt_A            5 TDPLTRTECSACHMAY   20 (125)
T ss_dssp             CCHHHHHHTSSSSCCC
T ss_pred             cHHHHHHHHHhccCCC
Confidence            4678999999999643

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=96.45  E-value=0.00067  Score=46.14  Aligned_cols=19  Identities=42%  Similarity=0.801  Sum_probs=15.4

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++.|+.||..         .|++||...
T Consensus        31 v~lGk~LF~D~~LS~~~~~sCasCH~~~   58 (326)
T 1nml_A           31 VELGKMEFFEPRLSSSHLISCNTCHNVG   58 (326)
T ss_dssp             HHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred             HHHHHHHhcCcccccCCCccchhcCCcc
Confidence            5689999974         499999864

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=95.79  E-value=0.0016  Score=44.56  Aligned_cols=19  Identities=37%  Similarity=0.877  Sum_probs=14.4

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++-|+.||-.         .|++||...
T Consensus        48 v~LGr~LFfD~~LS~~~~~SCASCH~~~   75 (341)
T 4aan_A           48 VELGRMLFFDPRLSASHLISCNTCHNVG   75 (341)
T ss_dssp             HHHHHHHHHCGGGSTTSCCCHHHHSBGG
T ss_pred             HHHHHHHhcCcccCCCcCCCccccCCcc
Confidence            4579999962         399999643

>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}

Probab=95.45  E-value=0.062  Score=32.53  Aligned_cols=12  Identities=33%  Similarity=0.916  Sum_probs=10.1

Q ss_pred             HHHHHhcccccC
Q psy14949          8 KIFTRACAQCHT   19 (102)
Q Consensus         8 ~lf~~~C~~CH~   19 (102)
                      ..|.+.|++||-
T Consensus        13 ~~Y~~eCgsCH~   24 (148)
T 3u99_A           13 AEYTAECGSCHM   24 (148)
T ss_dssp             HHHHHHHSSSSC
T ss_pred             HHHHHHHHhCCc
Confidence            468889999995

>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*

Probab=93.26  E-value=0.011  Score=41.99  Aligned_cols=19  Identities=26%  Similarity=0.606  Sum_probs=14.9

Q ss_pred             HHhHHHHHHHhcccccCCC
Q psy14949          3 VENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~   21 (102)
                      ++.|..+|..+|+.||+..
T Consensus        89 ~~~ggelfr~nCA~CHn~A  107 (489)
T 1pby_A           89 DEGPDTSMTQTCGRCHSYA  107 (489)
T ss_dssp             CCCSSHHHHHHHSSSSCTH
T ss_pred             ccCchhhHHhhHhhhCCch
Confidence            3456789999999999743

>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*

Probab=88.98  E-value=0.08  Score=36.67  Aligned_cols=19  Identities=32%  Similarity=0.821  Sum_probs=14.8

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++-|+.||-.         .|++||...
T Consensus        11 v~LGk~LFfD~rLS~~~~iSCaSCH~p~   38 (373)
T 3sjl_A           11 AALGAQLFVDPALSRNATQSCATCHDPA   38 (373)
T ss_dssp             HHHHHHHHTCGGGSTTSCCCHHHHSBGG
T ss_pred             HHHHHHHhCCCccCCCCCcCchhhCCcc
Confidence            4679999952         499999865

>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*

Probab=88.23  E-value=0.24  Score=37.53  Aligned_cols=33  Identities=15%  Similarity=0.317  Sum_probs=27.6

Q ss_pred             cHHhHHHHHHH-hcccccCCCCCCCCCCCCCccCC
Q psy14949          2 SVENGKKIFTR-ACAQCHTANEGGANKVGPNLFGV   35 (102)
Q Consensus         2 d~~~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~   35 (102)
                      |+.+||++|++ .|..||++=|. +.-.||+++..
T Consensus        68 dI~~Gq~~~q~~g~m~~GSi~Gh-GaY~aPD~TAd  101 (800)
T 3ayf_A           68 TIIGGQAVFQKYGLMDYGTVLGH-GSYMGPDYTAE  101 (800)
T ss_dssp             HHHHHHHHHHHTTGGGTSEETTE-ECSSSCBHHHH
T ss_pred             HHHHhHHHHHHcCCcccCccccC-CcccCcchHHH
Confidence            57899999997 59999999876 46779998753

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*

Probab=86.48  E-value=0.2  Score=29.63  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=19.0

Q ss_pred             CCccCCC-CCCCHHHHHHHHHHHhhc
Q psy14949         77 GTKMVFP-GLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        77 ~~~m~~~-~~ls~~e~~~l~~yl~sl  101 (102)
                      +.|.+|. ..++++|+.+|++|+.++
T Consensus        10 g~M~~~~~~~l~~~~~~~~a~y~~~~   35 (147)
T 2gc4_D           10 GSPLNFDDAMEEGRDTEAVKHFLETG   35 (147)
T ss_dssp             CCBCCGGGSCSTTSSSHHHHHHHHHS
T ss_pred             CCccccccccCCHHHHHHHHHHHHhc
Confidence            4444666 567899999999999865

>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}

Probab=81.38  E-value=0.52  Score=27.59  Aligned_cols=9  Identities=44%  Similarity=1.195  Sum_probs=7.2

Q ss_pred             HhcccccCC
Q psy14949         12 RACAQCHTA   20 (102)
Q Consensus        12 ~~C~~CH~~   20 (102)
                      ..|.+||..
T Consensus       104 ~~Cl~CH~~  112 (135)
T 3b42_A          104 QRCQSCHDA  112 (135)
T ss_dssp             GGGGGTSCT
T ss_pred             cChHhhcCC
Confidence            479999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1co6a_	107	a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas virid	2e-40
d1ycca_	108	a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's y	7e-38
d1ql3a_	99	a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrifi	9e-38
d1ccra_	111	a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embr	8e-37
d1hroa_	105	a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis	8e-36
d1jdla_	118	a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenu	2e-35
d1qn2a_	99	a.3.1.1 (A:) Cytochrome ch {Methylobacterium extor	2e-34
d1lfma_	103	a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin t	2e-31
d3c2ca_	112	a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum	3e-30
d1vyda_	116	a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus	5e-28
d1cota_	121	a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrifica	5e-25
d1i8oa_	114	a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palus	4e-24
d1cxca_	124	a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroide	6e-22
d1f1ca_	129	a.3.1.1 (A:) Photosystem II associated cytochrome	2e-09
d1mz4a_	131	a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus	3e-09
d1h32b_	138	a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rho	3e-09
d1e29a_	135	a.3.1.1 (A:) Photosystem II associated cytochrome	8e-08
d1cora_	82	a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri	6e-07
d351ca_	82	a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aerugino	8e-07
d1ynra1	80	a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter	4e-06
d1kx7a_	81	a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {She	2e-05
d1cc5a_	83	a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii	1e-04
d1c52a_	131	a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus	2e-04
d1a56a_	81	a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europae	2e-04
d1m70a1	92	a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutze	3e-04
d1cyja_	90	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	4e-04
d1f1fa_	88	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	4e-04
d2gc4d1	147	a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus deni	4e-04
d2c8sa1	149	a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylob	6e-04
d1c75a_	71	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	7e-04
d1kb0a1	97	a.3.1.6 (A:579-675) Quinoprotein alcohol dehydroge	8e-04
d1wvec1	74	a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cy	0.001
d1fcdc1	80	a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydro	0.002
d1kv9a1	104	a.3.1.6 (A:561-664) Quinoprotein alcohol dehydroge	0.003
d1fcdc2	94	a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehyd	0.004
d1cnoa_	86	a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica	0.004
d1qksa1	127	a.3.1.2 (A:9-135) N-terminal (heme c) domain of cy	0.004
d1gksa_	78	a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira h	0.004
d1ctja_	89	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	0.004

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]} Length = 107

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

 Score =  127 bits (320), Expect = 2e-40
 Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             +G+++F + C  CH+   G  NKVGP L G+ GR +G   GF Y+DANKN GITW+  
Sbjct: 3   AASGEQVF-KQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEE 61

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
               Y+++PK  IPGTKM+F G++ E+   DLIAY+   
Sbjct: 62  VFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQF 100

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 108

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (303), Expect = 7e-38
 Identities = 56/100 (56%), Positives = 67/100 (67%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           S + G  +F   C QCHT  +GG +KVGPNL G+ GR +GQA G+ YTDAN  K + W  
Sbjct: 7   SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
           + +  YL NPKKYIPGTKM F GL+KEKDR DLI YL   
Sbjct: 67  NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]} Length = 99

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

 Score =  120 bits (302), Expect = 9e-38
 Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
              G+K+F + C  CH  +    + VGP+L GVVGR      GF+Y+D  K  G  W+  
Sbjct: 3   PAAGEKVFGK-CKACHKLDGN--DGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPE 59

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            L  +L NPK  + GTKM F GL K +DR +LIAYL   
Sbjct: 60  ALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQ 98

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]} Length = 111

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

 Score =  118 bits (296), Expect = 8e-37
 Identities = 55/99 (55%), Positives = 71/99 (71%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
            + G+KIF   CAQCHT ++G  +K GPNL G+ GRQ+G  PG+ Y+ A+KN  + W  +
Sbjct: 11  PKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEEN 70

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
           TL  YL NPKKYIPGTKMVFPGL+K ++R DLI+YL   
Sbjct: 71  TLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEA 109

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]} Length = 105

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

 Score =  115 bits (289), Expect = 8e-36
 Identities = 47/99 (47%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
              GK +F   C  CHT  +G  NKVGP+L+GVVGR +G  PG++Y++AN   GI W+  
Sbjct: 7   PVEGKHLFHTICITCHTDIKGA-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPD 65

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            L  Y+++P+K +PGTKM +PG    + R D+IAYL TL
Sbjct: 66  VLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLETL 104

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]} Length = 118

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

 Score =  115 bits (288), Expect = 2e-35
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 19/116 (16%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITW 59
              G+ +F + C  CH       N VGP L GV+ RQ G APGF+Y+  N      G+ W
Sbjct: 3   PAKGEAVF-KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHW 61

Query: 60  SASTLDIYLQNPKKYIP--------------GTKMVFPGLRKEKDREDLIAYLSTL 101
           +   +  YL +P  ++                TKMVF  L  E++R+D++AYL   
Sbjct: 62  TPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQF 116

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]} Length = 99

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

 Score =  112 bits (280), Expect = 2e-34
 Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWSA 61
              G+K F   C  CH       N VGP L GVVG + G+ A G+ ++DA K  G+TW  
Sbjct: 4   AAAGEKAFAP-CKACHNFE---KNGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQ 59

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
           + L  +L +PKK +PGTKMVFPG+   K  +D+IAYL T
Sbjct: 60  ADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKT 98

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]} Length = 103

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

 Score =  104 bits (260), Expect = 2e-31
 Identities = 61/99 (61%), Positives = 78/99 (78%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           V  GKK F + CAQCHT   GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+  
Sbjct: 3   VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNND 62

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
           TL  YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL + 
Sbjct: 63  TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSA 101

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]} Length = 112

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

 Score =  101 bits (253), Expect = 3e-30
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 13/110 (11%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDAN---KNKGITW 59
              G+K+  + C  CHT ++GGANKVGPNLFGV          + Y+++    K KG+TW
Sbjct: 4   AAAGEKVS-KKCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTW 62

Query: 60  SASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
           + + L  Y++NPK ++          +KM F    K+ + E++IAYL TL
Sbjct: 63  TEANLAAYVKNPKAFVLEKSGDPKAKSKMTFKLT-KDDEIENVIAYLKTL 111

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]} Length = 116

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 96.4 bits (239), Expect = 5e-28
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 21/116 (18%)

Query: 3   VENGKKIFTRACAQCHT------ANEGGANKVGPNLFGVVGRQTGQAPGFDYTD---ANK 53
              G+K F   C  CH+             K GPNL+GVVGR  G  P F Y D   A  
Sbjct: 3   AAKGEKEF-NKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALG 61

Query: 54  NKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
             G  W+   +  Y+++P  ++          T+M F      K  ED+ AYL+++
Sbjct: 62  ASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLA---KGGEDVAAYLASV 114

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]} Length = 121

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

 Score = 88.7 bits (219), Expect = 5e-25
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 23/118 (19%)

Query: 3   VENGKKIFTRACAQCHTANEGGA------NKVGPNLFGVVGRQTGQAPGFDYTDA----- 51
              G+K F   C  CH              K GPNL+GVVGR+     GF Y +      
Sbjct: 4   AAKGEKEF-NKCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVA 62

Query: 52  NKNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
            KN  +TW+ + L  Y+ +PK ++          TKM F   +  K++ D++A+L+  
Sbjct: 63  EKNPDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQN 117

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 114

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 86.4 bits (213), Expect = 4e-24
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 22/116 (18%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK---GITW 59
            + G+ +F + C  CH       N VGP L GVVGR+ G A GF Y+  N N    G+ W
Sbjct: 3   AKAGEAVF-KQCMTCHR---ADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVW 58

Query: 60  SASTLDIYLQNPKKYIPG--------------TKMVFPGLRKEKDREDLIAYLSTL 101
           +A  +  YL +P  ++                TKM F  L  E+ R+D++AYL+TL
Sbjct: 59  TADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLATL 113

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]} Length = 124

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 81.1 bits (199), Expect = 6e-22
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 21/118 (17%)

Query: 3   VENGKKIFTRACAQCHTANEGGA-------NKVGPNLFGVVGRQTGQAPGFDYTDANK-- 53
            E G K F + C  CH   +           K GPNL+GVVGR  G    F         
Sbjct: 5   PEAGAKAFNQ-CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKE 63

Query: 54  --NKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
              KG+ W       Y+Q+P K++           KM F  L+KE D  ++ AYL  +
Sbjct: 64  AGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQV 120

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]} Length = 129

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

 Score = 49.2 bits (116), Expect = 2e-09
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGIT-WSA 61
           ++ G+++F  ACAQCH     G  +  P++           P  D   A  +      + 
Sbjct: 24  IKKGQQVFNAACAQCHA---LGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTY 80

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
                  +                  E D  ++  Y+   
Sbjct: 81  DGFVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQ 120

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]} Length = 131

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

 Score = 48.4 bits (114), Expect = 3e-09
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN--KGITW 59
               GK++F  ACA CH    GG  K  P+L           P  D  +   +  K  T 
Sbjct: 25  QYLEGKRLFQYACASCHV---GGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTT 81

Query: 60  SASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
                +I   +P             L  EKD   +  ++
Sbjct: 82  YDGEQEIAEVHPSLRSADIFPKMRNL-TEKDLVAIAGHI 119

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]} Length = 138

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

 Score = 48.7 bits (115), Expect = 3e-09
 Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 51/130 (39%)

Query: 3   VENGKKIFTR----ACAQCHT----ANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN 54
              G+++ T      C  CH     A+      VGP+L GV  R                
Sbjct: 27  PVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR---------------- 70

Query: 55  KGITWSASTLDIYLQNPKKYIPGTK-----------------------MVFPGLRKEKDR 91
               +  + +   L N K   P T                             L      
Sbjct: 71  ----YPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQI 126

Query: 92  EDLIAYLSTL 101
           ED++AYL TL
Sbjct: 127 EDVVAYLMTL 136

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 135

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

 Score = 44.9 bits (105), Expect = 8e-08
 Identities = 23/98 (23%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGIT-WS 60
              NG+KIF   C QCH     G  K   N+   +    G  P  D   A         S
Sbjct: 25  QFTNGQKIFVDTCTQCHL---QGKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKS 81

Query: 61  ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
               D Y +                  E D  D+  Y 
Sbjct: 82  YDGEDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYT 119

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]} Length = 82

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 41.5 bits (96), Expect = 6e-07
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 4   ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           E+G+ +F    CA CH+ +   A  VGP    V  +  GQ                 +A 
Sbjct: 1   EDGEALFKSKPCAACHSID---AKLVGPAFKEVAAKYAGQD---------------GAAD 42

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            L  +++N  + + G   + P    E++ + L  ++ + 
Sbjct: 43  LLAGHIKNGSQGVWGPIPMPPNPVTEEEAKILAEWILSQ 81

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]} Length = 82

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.1 bits (95), Expect = 8e-07
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 19/99 (19%)

Query: 4   ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           E+ + +F    C  CH  +      VGP    V  +  GQA                   
Sbjct: 1   EDPEVLFKNKGCVACHAID---TKMVGPAYKDVAAKFAGQAGAEAE-------------- 43

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            L   ++N  + + G   + P    + + + L  ++ + 
Sbjct: 44  -LAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQ 81

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]} Length = 80

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

 Score = 39.5 bits (91), Expect = 4e-06
 Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 19/96 (19%)

Query: 7   KKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
           +++  +  C  CH            ++                    K  G   +   L 
Sbjct: 2   EQLAKQKGCMACHDLKAKKVGPAYADVAK------------------KYAGRKDAVDYLA 43

Query: 66  IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
             ++     + G+  + P    + + + L  ++ ++
Sbjct: 44  GKIKKGGSGVWGSVPMPPQNVTDAEAKQLAQWILSI 79

>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]} Length = 81

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome ScyA
species: Shewanella putrefaciens [TaxId: 24]

 Score = 37.6 bits (86), Expect = 2e-05
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 2  SVENGKKIFTRACAQCHTANEGGANKVGPNL 32
           +++ + I+ +AC  CH+    GA K     
Sbjct: 2  DLQDAEAIYNKACTVCHSMGVAGAPKSHNTA 32

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]} Length = 83

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

 Score = 35.6 bits (81), Expect = 1e-04
 Identities = 17/102 (16%), Positives = 24/102 (23%), Gaps = 23/102 (22%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
              +G  +  + C  CH      A KVG                     +   K    + 
Sbjct: 3   GARSGDDVVAKYCNACHGTGLLNAPKVGD--------------------SAAWKTRADAK 42

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDRE--DLIAYLSTL 101
             LD  L      +              D E    I  +S L
Sbjct: 43  GGLDGLLAQSLSGL-NAMPPKGTCADCSDDELKAAIGKMSGL 83

>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]} Length = 131

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Thermus thermophilus [TaxId: 274]

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 5  NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
          +G KI+ + CA CH  N  G     P L G V     +  G +Y       G+       
Sbjct: 3  DGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQ---- 57

Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
                  KY  G    F  L K+++   ++ ++
Sbjct: 58 --IEVKGMKY-NGVMSSFAQL-KDEEIAAVLNHI 87

>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]} Length = 81

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Nitrosomonas europaea [TaxId: 915]

 Score = 34.9 bits (79), Expect = 2e-04
 Identities = 13/97 (13%), Positives = 21/97 (21%), Gaps = 17/97 (17%)

Query: 5   NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
           +        C  CH         VGP L  +  +   +     Y                
Sbjct: 1   DADLAKKNNCIACHQVETKV---VGPALKDIAAKYADKDDAATY--------------LA 43

Query: 65  DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
                          M       + D + L  ++ TL
Sbjct: 44  GKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTL 80

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} Length = 92

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 34.6 bits (78), Expect = 3e-04
 Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 14/99 (14%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
            E G+      C  CH  +        P L G          G  Y           S  
Sbjct: 4   AEAGQGKVA-VCGACHGVDGNSPAPNFPKLAG---------QGERYLLKQLQDIKAGSTP 53

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
                +      + G          ++D ED+ AY S+ 
Sbjct: 54  GAPEGVGRKVLEMTG----MLDPLSDQDLEDIAAYFSSQ 88

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 90

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 34.4 bits (78), Expect = 4e-04
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 19/96 (19%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          +  G ++F   CA CH                            D     +     +   
Sbjct: 3  LALGAQVFNGNCAACHMGG---------------RNSVMPEKTLDKAALEQYLDGGFKVE 47

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          ++   ++N K  +P     +     E++ + +  Y+
Sbjct: 48 SIIYQVENGKGAMPA----WADRLSEEEIQAVAEYV 79

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]} Length = 88

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

 Score = 34.4 bits (78), Expect = 4e-04
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 17/96 (17%)

Query: 3  VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
          V  G  +F+  CA CH                       +                 + +
Sbjct: 2  VAAGASVFSANCAACHMGGRNVIVA-------------NKTLSKSDLAKYLKGFDDDAVA 48

Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
           +   + N K  +PG    F G       ED+ AY+
Sbjct: 49 AVAYQVTNGKNAMPG----FNGRLSPLQIEDVAAYV 80

>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]} Length = 147

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.2 bits (80), Expect = 4e-04
 Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 21/101 (20%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            +   ++++   C+ CH     G    G                + Y     + G+  + 
Sbjct: 45  ILPEAEELYAGMCSGCHGHYAEGKIGPGL-----------NDAYWTYPGNETDVGLFSTL 93

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
                          G      G     +    +A++  L+
Sbjct: 94  ----------YGGATGQMGPMWGSLTLDEMLRTMAWVRHLY 124

>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]} Length = 149

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c-L (MoxG)
species: Methylobacterium extorquens [TaxId: 408]

 Score = 34.5 bits (78), Expect = 6e-04
 Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 21/101 (20%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            + NG+ +F  +C+ CH     G    G N             G   T            
Sbjct: 30  CLRNGESLFATSCSGCHGHLAEGKLGPGLNDNYWTYPSNTTDVGLFATIFG--------- 80

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
                          G            +    IA++  L+
Sbjct: 81  ------------GANGMMGPHNENLTPDEMLQTIAWIRHLY 109

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]} Length = 71

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

 Score = 33.1 bits (75), Expect = 7e-04
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 28/97 (28%)

Query: 5   NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
           + + +  + C  CH  +  GA    P +                          +S   +
Sbjct: 2   DAEAVVQQKCISCHGGDLTGA--SAPAIDKAGAN--------------------YSEEEI 39

Query: 65  DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
              + N +  +P       G+ K  + E + A+L+  
Sbjct: 40  LDIILNGQGGMP------GGIAKGAEAEAVAAWLAEK 70

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 97

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

 Score = 33.7 bits (76), Expect = 8e-04
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 22/97 (22%)

Query: 2  SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
           VE G  ++   C  CH          G N+                         ++  
Sbjct: 14 KVEAGTMLYVANCVFCHGVPGVDR---GGNIPN-----------------LGYMDASYIE 53

Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
          +  +   + P   +      F G     D E L A++
Sbjct: 54 NLPNFVFKGP--AMVRGMPDFTGKLSGDDVESLKAFI 88

>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]} Length = 74

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: p-Cresol methylhydroxylase, cytochrome c subunit
species: Pseudomonas putida [TaxId: 303]

 Score = 33.0 bits (74), Expect = 0.001
 Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 29/99 (29%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
             +GK ++ + C  CH    G     GP L G                            
Sbjct: 3   WGSGKNLYDKVCGHCHKPEVGV----GPVLEG------------------------RGLP 34

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
              I       +          +  ++    +  YLS+L
Sbjct: 35  EAYIKDIVRNGFRAMPAFPASYV-DDESLTQVAEYLSSL 72

>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 80

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 32.5 bits (73), Expect = 0.002
 Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 22/98 (22%)

Query: 4   ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAST 63
           E   ++ T  CA CH  +        P++                               
Sbjct: 1   EPTAEMLTNNCAGCHGTHGNSVGPASPSIA--------------------QMDPMVFVEV 40

Query: 64  LDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
           ++ + ++ +        +  G     D E +  Y    
Sbjct: 41  MEGF-KSGEIASTIMGRIAKGY-STADFEKMAGYFKQQ 76

>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 104

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

 Score = 32.3 bits (72), Expect = 0.003
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 23/101 (22%)

Query: 2   SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
            V+ GK+++ + C+ CH      +  + P+L                  A K  G+    
Sbjct: 19  QVQAGKQLYGQFCSVCHGMG-TISGGLIPDLRQSSDATREHFQQIVLQGALKPLGMPSFD 77

Query: 62  STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
            +L                        ++ E +  Y+ +  
Sbjct: 78  DSLK----------------------PEEVEQIKLYVMSRE 96

>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 94

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 31.8 bits (71), Expect = 0.004
 Identities = 9/99 (9%), Positives = 24/99 (24%), Gaps = 15/99 (15%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
            + G K+  + C +CH         +       +                + +       
Sbjct: 10  ADTGAKLHDKYCEKCHVEG---GKPLADEEDYHILAGQWTPYLQYAMSDFREERRP---- 62

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
                    KK     + +      +   + L A+ ++ 
Sbjct: 63  -------MEKKMASKLRELLKAE-GDAGLDALFAFYASQ 93

>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]} Length = 86

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Pseudomonas nautica [TaxId: 2743]

 Score = 31.6 bits (71), Expect = 0.004
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           +E GK      CA CH  N      + PNL G                    +   +  +
Sbjct: 4   IEAGKAKAA-VCAACHGQNGISQVPIYPNLAG--------------------QKEQYLVA 42

Query: 63  TLDIYLQNPKKYIPGT--KMVFPGLRKEKDREDLIAYLSTL 101
            L  Y    ++       +     L  + D  +L AY ++ 
Sbjct: 43  ALKAYKAGQRQGGQAPVMQGQATAL-SDADIANLAAYYASN 82

>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 127

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 32.2 bits (72), Expect = 0.004
 Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 22/96 (22%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
                KI+   CA CH     GA   G  L   + R  G      +       G+     
Sbjct: 46  YNEANKIYFERCAGCHGVLRKGAT--GKALTPDLTRDLGFDYLQSFITYASPAGMPN--- 100

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
                                G    +  + +  YL
Sbjct: 101 -----------------WGTSGELSAEQVDLMANYL 119

>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]} Length = 78

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Ectothiorhodospira halophila [TaxId: 1053]

 Score = 31.3 bits (70), Expect = 0.004
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 5  NGKKIFTR----ACAQCHTANEGGANKVGPNL 32
          +G+ I+       C+ CH     GA ++    
Sbjct: 1  DGESIYINGTAPTCSSCHDRGVAGAPELNAPE 32

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]} Length = 89

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

 Score = 31.7 bits (71), Expect = 0.004
 Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 19/99 (19%)

Query: 3   VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
           +  GK +F   CA CH                  G               +     ++  
Sbjct: 4   LALGKAVFDGNCAACHAGG---------------GNNVIPDHTLQKAAIEQFLDGGFNIE 48

Query: 63  TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
            +   ++N K  +P     + G   E +   + AY+   
Sbjct: 49  AIVYQIENGKGAMPA----WDGRLDEDEIAGVAAYVYDQ 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1ycca_	108	Mitochondrial cytochrome c {Baker's yeast (Sacchar	99.98
d1hroa_	105	Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]	99.97
d1ccra_	111	Mitochondrial cytochrome c {Rice embryos (Oryza sa	99.97
d1co6a_	107	Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10	99.97
d1ql3a_	99	Cytochrome c552 {Paracoccus denitrificans [TaxId:	99.97
d1qn2a_	99	Cytochrome ch {Methylobacterium extorquens [TaxId:	99.97
d1lfma_	103	Mitochondrial cytochrome c {Bluefin tuna (Thunnus	99.96
d1jdla_	118	Cytochrome c2 {Rhodospirillum centenum [TaxId: 340	99.95
d3c2ca_	112	Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]	99.95
d1i8oa_	114	Cytochrome c2 {Rhodopseudomonas palustris [TaxId:	99.93
d1vyda_	116	Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061	99.92
d1cota_	121	Cytochrome c2 {Paracoccus denitrificans [TaxId: 26	99.9
d1cxca_	124	Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 106	99.9
d1c75a_	71	Cytochrome c6 (synonym: cytochrome c553) {Bacillus	99.82
d1ynra1	80	Cytochrome c552 {Hydrogenobacter thermophilus [Tax	99.81
d1cora_	82	Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]	99.81
d1h32b_	138	Mono-heme c-type cytochrome SoxX {Rhodovulum sulfi	99.81
d351ca_	82	Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 28	99.81
d1cnoa_	86	Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]	99.81
d1c6sa_	87	Cytochrome c6 (synonym: cytochrome c553) {Cyanobac	99.8
d1kx7a_	81	Mono-heme c-type cytochrome ScyA {Shewanella putre	99.8
d1kb0a1	97	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.78
d1wvec1	74	p-Cresol methylhydroxylase, cytochrome c subunit {	99.78
d1m70a1	92	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.78
d2gc4d1	147	Cytochrome c551 {Paracoccus denitrificans [TaxId:	99.77
d1f1fa_	88	Cytochrome c6 (synonym: cytochrome c553) {Arthrosp	99.77
d1ctja_	89	Cytochrome c6 (synonym: cytochrome c553) {Monoraph	99.76
d1cyja_	90	Cytochrome c6 (synonym: cytochrome c553) {Chlamydo	99.76
d1c53a_	79	Cytochrome c6 (synonym: cytochrome c553) {Desulfov	99.75
d1nira1	112	N-terminal (heme c) domain of cytochrome cd1-nitri	99.75
d1gdva_	85	Cytochrome c6 (synonym: cytochrome c553) {Red alga	99.74
d1kv9a1	104	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.74
d1a56a_	81	Cytochrome c552 {Nitrosomonas europaea [TaxId: 915	99.74
d1c52a_	131	Cytochrome c552 {Thermus thermophilus [TaxId: 274]	99.73
d1cc5a_	83	Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]	99.73
d1ls9a_	91	Cytochrome c6 (synonym: cytochrome c553) {Green al	99.73
d1fcdc1	80	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.71
d1qksa1	127	N-terminal (heme c) domain of cytochrome cd1-nitri	99.71
d2c8sa1	149	Cytochrome c-L (MoxG) {Methylobacterium extorquens	99.71
d1fcdc2	94	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.7
d1e29a_	135	Photosystem II associated cytochrome c549 {Synecho	99.69
d1mz4a_	131	Cytochrome c550 {Thermosynechococcus elongatus [Ta	99.68
d1f1ca_	129	Photosystem II associated cytochrome c549 {Arthros	99.68
d1gksa_	78	Cytochrome c551 {Ectothiorhodospira halophila [Tax	99.65
d1h1oa2	90	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	99.63
d1m70a2	98	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.58
d1h1oa1	82	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	99.46
d1nmla2	160	Di-heme cytochrome c peroxidase {Pseudomonas nauti	99.16
d1eb7a2	159	Di-heme cytochrome c peroxidase {Pseudomonas aerug	99.16
d1iqca2	158	Di-heme cytochrome c peroxidase {Nitrosomonas euro	99.03
d1pbya1	85	Quinohemoprotein amine dehydrogenase A chain, doma	98.42
d1jmxa1	84	Quinohemoprotein amine dehydrogenase A chain, doma	98.3
d1dw0a_	112	SHP, an oxygen binding cytochrome c {Rhodobacter s	98.1
d1gu2a_	124	Cytochrome c'' {Methylophilus methylotrophus, stra	97.96
d1h32a2	111	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	97.73
d1ppjd1	195	Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99	97.67
d3cx5d1	199	Cytochrome bc1 domain {Baker's yeast (Saccharomyce	97.66
d1eb7a1	164	Di-heme cytochrome c peroxidase {Pseudomonas aerug	97.19
d1nmla1	166	Di-heme cytochrome c peroxidase {Pseudomonas nauti	97.05
d1h32a1	150	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	97.03
d1iqca1	150	Di-heme cytochrome c peroxidase {Nitrosomonas euro	96.9
d1pbya2	80	Quinohemoprotein amine dehydrogenase A chain, doma	90.08
d1jmxa2	77	Quinohemoprotein amine dehydrogenase A chain, doma	88.94

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2e-32  Score=159.14  Aligned_cols=101  Identities=55%  Similarity=1.031  Sum_probs=95.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||+.+|++||.++.++...+||+|.++.++..+...+|.++..+...+..|+.+.|..||.+|+...||+.|
T Consensus         6 gDa~~G~~lF~~~C~~CH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~ys~~l~~~~~~W~~~~L~~~l~~P~~~~pgt~M   85 (108)
T d1ycca_           6 GSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKM   85 (108)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCC
T ss_pred             cCHHHHHHHHHHhChhhCcCCCCCCcccccccCCcccCcccccCCcccCHHHhhccccCCHHHHHHHHHchhccCCCCCC
Confidence            79999999999999999999866667899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|.++++++|+.+|++||+++
T Consensus        86 ~~~gi~~~~d~~~liaYLks~  106 (108)
T d1ycca_          86 AFGGLKKEKDRNDLITYLKKA  106 (108)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHh
Confidence            999998999999999999986

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

Probab=99.97  E-value=2e-32  Score=158.52  Aligned_cols=101  Identities=48%  Similarity=0.944  Sum_probs=94.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||+++|++||++.+ +++.+||+|.++.++..+..++|.|++.+...+..|+.+.|..||.+|+..+|++.|
T Consensus         5 gD~~~G~~lF~~~C~~CH~~~~-~~~~~GP~L~gi~~R~~g~~~~~~ys~~l~~~~~~~~~~~L~~~l~~P~~~~pgt~M   83 (105)
T d1hroa_           5 GDPVEGKHLFHTICITCHTDIK-GANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKM   83 (105)
T ss_dssp             CCHHHHHHHHTTTGGGTCCSST-TCBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCC
T ss_pred             cCHHHHHHHHHHhhHHhCCCCC-CCCccccccchhcccccccccCcccCHHHHhccccccHHHHHHHHHCccccCCCCCC
Confidence            7999999999989999999875 356789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|.++++++|+.+|++||+||+
T Consensus        84 ~~~gl~~~~~~~dliaYL~sLK  105 (105)
T d1hroa_          84 GYPGQPDPQKRADIIAYLETLK  105 (105)
T ss_dssp             CCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcC
Confidence            9999989999999999999986

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

Probab=99.97  E-value=1.3e-31  Score=156.47  Aligned_cols=101  Identities=54%  Similarity=1.014  Sum_probs=95.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||+++|++||+++..++..+||+|.++.++.....++|.++..+...+..|+.++|..||++|....++++|
T Consensus         9 gD~~~G~~lF~~~CaaCH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~L~~~l~~P~~~~~g~~M   88 (111)
T d1ccra_           9 GNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPKKYIPGTKM   88 (111)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHSTTCCC
T ss_pred             CCHHHHHHHHHhcCHhhCCcCCCCcchhHHHHHhhhcccccccccccccHHHHhccccCCHHHHHHHHHCccccCCCCCC
Confidence            78999999999999999999866677899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      ++.++++++|+.+|++||+++
T Consensus        89 ~~~~~~~~~d~~dliaYLk~~  109 (111)
T d1ccra_          89 VFPGLKKPQERADLISYLKEA  109 (111)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHh
Confidence            999998999999999999985

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=99.97  E-value=1.5e-31  Score=155.00  Aligned_cols=100  Identities=45%  Similarity=0.932  Sum_probs=94.2

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      |+++|+++|+ +|++||.++.++...+||+|.++.++..+..++|.|++.+...+..|+.+.|..||.+|+...||+.|+
T Consensus         2 Da~~G~~~F~-~C~~CH~~~~~~~~~~GP~L~gi~gr~~g~~~~~~ys~al~~~~~~w~~~~L~~~l~~P~~~~pGt~M~   80 (107)
T d1co6a_           2 DAASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMI   80 (107)
T ss_dssp             CHHHHHHHHH-HHHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSCC
T ss_pred             cHHHHHHHHH-hccccCccCCCCCCCccccccCccCcccccccccccCHHHhhccccCCHHHHHHHHhChHhhCCCCCCC
Confidence            7899999997 699999998766778999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      |.++.+++|+.+|++||++++
T Consensus        81 ~~gl~~~~d~~~liAYL~~l~  101 (107)
T d1co6a_          81 FAGVKDEQKVSDLIAYIKQFN  101 (107)
T ss_dssp             CCCCCCHHHHHHHHHHHHTBC
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            999988999999999999874

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=3.2e-31  Score=151.85  Aligned_cols=99  Identities=42%  Similarity=0.792  Sum_probs=92.5

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|+++|+.||+ .|++||++++  ...+||+|.++.++..+..++|.++..+...+..|+.+.|..||.+|...+||+.|
T Consensus         1 AD~~~G~~~f~-~C~~CHs~~~--~~~~GP~L~gi~gr~~~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt~M   77 (99)
T d1ql3a_           1 ADPAAGEKVFG-KCKACHKLDG--NDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKM   77 (99)
T ss_dssp             CCHHHHHHHGG-GTTTTCCSSS--CCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHH-HHHhhCCcCC--CCCCCCCccCccCCcccccccccccHHHHhcccccCHHHHHHHHhChHhhCCCCCC
Confidence            58999999996 5999999974  56789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|.++.+++|+.+||+||++++
T Consensus        78 ~~~gl~~~~d~~dliaYLks~~   99 (99)
T d1ql3a_          78 AFAGLPKIEDRANLIAYLEGQQ   99 (99)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Confidence            9999988999999999999985

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.97  E-value=2e-30  Score=148.36  Aligned_cols=97  Identities=46%  Similarity=0.893  Sum_probs=88.7

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCC-CCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTK   79 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   79 (102)
                      ||+++|++||+ +|++||.++.   +.+||+|.++.++..+. .++|.|++.+...+..|+.+.|..||++|+.+.||+.
T Consensus         2 GDa~~G~~lF~-~C~~CH~i~~---~~~GP~L~gi~~r~~g~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt~   77 (99)
T d1qn2a_           2 GDAAAGEKAFA-PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTK   77 (99)
T ss_dssp             CCHHHHHHHTG-GGGGTCCSSS---CSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred             CCHHHHHHHHH-hHHHHcCCcc---cCcCCccccccCCccccccCCccccHHHHhcCccccHHHHHHHHHCccccCCCCC
Confidence            79999999995 6999999873   55799999999998876 5678999999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhc
Q psy14949         80 MVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        80 m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      |+|.++.+++|+.+|++||+|.
T Consensus        78 M~~~gl~~~~d~~dliaYL~T~   99 (99)
T d1qn2a_          78 MVFPGISDPKKVDDIIAYLKTK   99 (99)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHHHHHccC
Confidence            9999987899999999999984

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

Probab=99.96  E-value=5.7e-29  Score=142.75  Aligned_cols=101  Identities=60%  Similarity=1.112  Sum_probs=91.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|++||+++|++||++++.+....||.+.+...+.......+.+...+...+..|+.+.+..|+++|....++++|
T Consensus         1 GD~~~G~~lf~~~C~~CH~~~~~~~~~~g~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~M   80 (103)
T d1lfma_           1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM   80 (103)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHCCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHHccChhccCcccccCCCccccccccccccccccccccccHHHhhcCcccCHHHHHHHHhCcccccCCCCC
Confidence            89999999999999999999877677889999998888777767777778888889999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      ++.+++|++|+++|++||+|+
T Consensus        81 ~~~~~ls~~ei~dviAYLkt~  101 (103)
T d1lfma_          81 IFAGIKKKGERQDLVAYLKSA  101 (103)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999986

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

Probab=99.95  E-value=4.9e-29  Score=146.81  Aligned_cols=100  Identities=37%  Similarity=0.793  Sum_probs=86.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchh---hhhcCccccHHHHHHHHhCCCCCC--
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDA---NKNKGITWSASTLDIYLQNPKKYI--   75 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~--   75 (102)
                      ||+++|++||+ +|++||.++.++.+.+||+|.++.++..++.++|.|+..   +...++.|+.+.|..||++|....  
T Consensus         1 GD~~~G~~vF~-~C~~CH~v~~~~~~~iGP~L~gi~~R~~g~~~g~~Ys~~~~~~~~~g~~W~~e~L~~~l~~P~~~i~~   79 (118)
T d1jdla_           1 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRK   79 (118)
T ss_dssp             CCHHHHHHHGG-GTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHhCCcCCCCCCCCCCcccCccCcccCccccccccHHHHHHHhcCccCCHHHHHHHHHCHHHhhcc
Confidence            89999999995 699999997666778999999999999999999998864   457889999999999999987532  


Q ss_pred             ------------CCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         76 ------------PGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        76 ------------~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                                  ++++|+| ++.+++|+.+|++||++|.
T Consensus        80 ~~~~~~~~~~~~~~~~m~~-~l~~~~d~~dliaYL~sl~  117 (118)
T d1jdla_          80 FLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQFS  117 (118)
T ss_dssp             HHHHTTCGGGGSSCCSCCC-CCCCHHHHHHHHHHHGGGC
T ss_pred             ccccccccccCCCCCcccc-cCCCHHHHHHHHHHHHHhC
Confidence                        3567777 5778999999999999984

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.95  E-value=6.8e-28  Score=140.39  Aligned_cols=100  Identities=42%  Similarity=0.822  Sum_probs=86.8

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhh---hhcCccccHHHHHHHHhCCCCC---
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDAN---KNKGITWSASTLDIYLQNPKKY---   74 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~---   74 (102)
                      ||+++|++||+ +|++||+++..+....||+|.++.++..+....+.+....   ...+..|+.+.|..|+++|..+   
T Consensus         2 GDa~~G~~lf~-~C~~CH~~~~~~~~~~Gp~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~p~~~~~~   80 (112)
T d3c2ca_           2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLE   80 (112)
T ss_dssp             CCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHhCCCcCCCCccccccccCCccccccccccccccHHHHHhhhccccCCHHHHHHHHHCcHHHhcc
Confidence            89999999995 6999999987777788999999999998888888776654   4678899999999999998764   


Q ss_pred             -----CCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         75 -----IPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        75 -----~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                           .++++|++. +|+++||.+|++||+||+
T Consensus        81 ~~~~~~~~~~m~~~-~ls~qdi~divAYL~tLK  112 (112)
T d3c2ca_          81 KSGDPKAKSKMTFK-LTKDDEIENVIAYLKTLK  112 (112)
T ss_dssp             HHCCTTCCCSCCCC-CCCHHHHHHHHHHHTTCC
T ss_pred             cccCCCCCCCCCCC-CCCHHHHHHHHHHHHhcC
Confidence                 466788875 679999999999999996

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.93  E-value=1.5e-26  Score=135.21  Aligned_cols=96  Identities=42%  Similarity=0.852  Sum_probs=80.8

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchh---hhhcCccccHHHHHHHHhCCCCCCC--
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDA---NKNKGITWSASTLDIYLQNPKKYIP--   76 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~--   76 (102)
                      |+++|++||+ +|++||.++   .+.+||.|.++.++..+..+++.+...   +...+..|+.++|..||++|....+  
T Consensus         2 Da~~G~~lF~-~C~aCH~~~---~~~~GP~l~gi~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~~L~~~i~~p~~~~~g~   77 (114)
T d1i8oa_           2 DAKAGEAVFK-QCMTCHRAD---KNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKF   77 (114)
T ss_dssp             CHHHHHHHHH-HHTTTCCSS---SCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHH
T ss_pred             cHHHHHHHHH-HhHHhcCCC---CCCCCCCccCccccccccccchhhhhHHHHHhccCcccCHHHHHHHHhCcHhhccCc
Confidence            8899999996 699999876   355799999999999888888876553   4467889999999999999876433  


Q ss_pred             ------------CCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         77 ------------GTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        77 ------------~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                                  .++|++ ++++++||.+|++||+|||
T Consensus        78 ~~~~~~~~~~~~~t~M~~-~~l~~~di~dliAYL~sLK  114 (114)
T d1i8oa_          78 LTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLATLK  114 (114)
T ss_dssp             HHHTTCGGGCCSCCSSCC-CCCCHHHHHHHHHHHHTTC
T ss_pred             ccchhhhhcccCCCcCCc-CCCCHHHHHHHHHHHHHcC
Confidence                        478887 6779999999999999996

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.92  E-value=8.3e-26  Score=132.54  Aligned_cols=98  Identities=36%  Similarity=0.704  Sum_probs=83.0

Q ss_pred             CcHHhHHHHHHHhcccccCCCCC------CCCCCCCCccCCcCCcCCCCCCCccch---hhhhcCccccHHHHHHHHhCC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEG------GANKVGPNLFGVVGRQTGQAPGFDYTD---ANKNKGITWSASTLDIYLQNP   71 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~------g~~~~gp~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~   71 (102)
                      ||+++|++||+ +|++||.+++.      +...+||+|.++.++..+..++|.++.   .+...+..|+.+.|..||++|
T Consensus         1 GD~a~G~~vf~-~C~~CH~i~~~~~~~~~~~~~~GP~L~gi~~r~~~~~~~~~~s~~~~~~~~~~~~w~~~~L~~~l~~P   79 (116)
T d1vyda_           1 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP   79 (116)
T ss_dssp             CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHH-HhHHhCCCcCCcccccccccchhhhhcCccccchhhcccchhhhHHHHHHhcCccccHHHHHHHHHCH
Confidence            89999999995 69999998642      235689999999999999999998777   456788999999999999999


Q ss_pred             CCC--------CCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         72 KKY--------IPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        72 ~~~--------~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +.+        .|++.|+|.++   +|+++|++||++|.
T Consensus        80 ~~~~~~~~~~~~p~t~M~~~g~---~d~~dliAYL~sL~  115 (116)
T d1vyda_          80 GAFLKEKLDDKKAKTEMAFKLA---KGGEDVAAYLASVV  115 (116)
T ss_dssp             HHHHHHHHTCTTCCCSCCCCCS---SCHHHHHHHHHHTC
T ss_pred             HHHhcccccCCCCCCCCCCCCC---CCHHHHHHHHHHhc
Confidence            864        47899998876   34569999999984

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=7.4e-25  Score=129.25  Aligned_cols=98  Identities=35%  Similarity=0.714  Sum_probs=81.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCC------CCCCCCCccCCcCCcCCCCCCCccchhhh-----hcCccccHHHHHHHHh
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGG------ANKVGPNLFGVVGRQTGQAPGFDYTDANK-----NKGITWSASTLDIYLQ   69 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g------~~~~gp~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~   69 (102)
                      ||+++|++||+ +|++||.++..+      .+.+||+|.++..+..+...+|.++..+.     ..++.|+.+.|..||+
T Consensus         2 GDa~~G~~vF~-~C~~CH~~~~~~~~~~~~~~~~GP~L~gi~~r~~~~~~~~~~~~~~~~~~~~~~g~~w~~~~L~~~l~   80 (121)
T d1cota_           2 GDAAKGEKEFN-KCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEADLIEYVT   80 (121)
T ss_dssp             CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHHH
T ss_pred             CCHHHHHHHHH-hCcccCccCCCCcccccccchhhHHhcCcccccccccccccchHHHHHHHhhccCCCCCHHHHHHHHH
Confidence            79999999995 699999987542      35689999999999999999998777543     4688999999999999


Q ss_pred             CCCCCC--------CCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         70 NPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        70 ~~~~~~--------~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|+.+.        +++.|++   ++++|+.+|++||+++.
T Consensus        81 ~P~~~i~~~~~~~~~~t~M~~---~~~~d~~dliAYLks~~  118 (121)
T d1cota_          81 DPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQNS  118 (121)
T ss_dssp             CHHHHHHHHHTCTTCCCSCCC---CCCSCHHHHHHHHHHTC
T ss_pred             CcHHHhccccCCCCCCCCCCC---CCHHHHHHHHHHHHHcC
Confidence            998643        5666764   36789999999999873

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.90  E-value=3.2e-24  Score=126.72  Aligned_cols=100  Identities=36%  Similarity=0.683  Sum_probs=80.9

Q ss_pred             CcHHhHHHHHHHhcccccCCCCC-------CCCCCCCCccCCcCCcCCCCCCCccch----hhhhcCccccHHHHHHHHh
Q psy14949          1 MSVENGKKIFTRACAQCHTANEG-------GANKVGPNLFGVVGRQTGQAPGFDYTD----ANKNKGITWSASTLDIYLQ   69 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~-------g~~~~gp~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~   69 (102)
                      ||+++|++||+ +|++||.+++.       +....+|.|.++..+.....+.|.+..    .+...+..|+.+.|..|+.
T Consensus         3 GD~~~G~~vF~-~Ca~CH~i~~~~~~~~~g~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~   81 (124)
T d1cxca_           3 GDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYVQ   81 (124)
T ss_dssp             SCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred             CCHHHHHHHHH-hhHhhCCccccCccccccccchhhhhhcccccccccccccchhhHHHHHHHhhccccCCHHHHHHHHh
Confidence            79999999995 79999988753       234678999999988888888775433    2345678999999999999


Q ss_pred             CCCCC--------CCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         70 NPKKY--------IPGTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        70 ~~~~~--------~~~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      +|+..        .++++|++ ++|+++|+.+|++||++|.
T Consensus        82 ~p~~~~~~~~~~~~~~~~M~~-~~l~~~di~DLiAYL~sl~  121 (124)
T d1cxca_          82 DPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQVA  121 (124)
T ss_dssp             CHHHHHHHHHSCTTCCCSCCC-CCCCHHHHHHHHHHHHHHC
T ss_pred             CcHhhhcccccccCCCCCCCC-CCCCHHHHHHHHHHHHHcC
Confidence            98754        36788987 4679999999999999974

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

Probab=99.82  E-value=1.9e-20  Score=100.70  Aligned_cols=70  Identities=17%  Similarity=0.309  Sum_probs=55.1

Q ss_pred             hHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCCC
Q psy14949          5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPG   84 (102)
Q Consensus         5 ~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~   84 (102)
                      +|++||.++|++||+.++.|  ..||+|.+...                    .++.++|..+|++++..||    ++  
T Consensus         2 ~G~~ly~~~Ca~CHg~~~~G--~~gP~L~~~~~--------------------~~~~~~l~~~i~~G~~~MP----~~--   53 (71)
T d1c75a_           2 DAEAVVQQKCISCHGGDLTG--ASAPAIDKAGA--------------------NYSEEEILDIILNGQGGMP----GG--   53 (71)
T ss_dssp             CHHHHHHHHTHHHHCTTSSC--SSSCCCTTGGG--------------------TSCHHHHHHHHHHCBTTBC----SC--
T ss_pred             CHHHHHHHHHHHhCCCcccC--cchhhcccccc--------------------ccChHHHHHHHHhCcCCCC----CC--
Confidence            59999999999999988643  46888876432                    2357889999999875433    33  


Q ss_pred             CCCHHHHHHHHHHHhhcC
Q psy14949         85 LRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        85 ~ls~~e~~~l~~yl~sl~  102 (102)
                      .||++|+++|++||+++|
T Consensus        54 ~Ls~~ei~~i~~Yl~~~K   71 (71)
T d1c75a_          54 IAKGAEAEAVAAWLAEKK   71 (71)
T ss_dssp             SSCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            479999999999999986

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

Probab=99.81  E-value=9.9e-21  Score=103.94  Aligned_cols=78  Identities=17%  Similarity=0.315  Sum_probs=60.0

Q ss_pred             HHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCC
Q psy14949          7 KKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGL   85 (102)
Q Consensus         7 ~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~   85 (102)
                      ++||++ +|++||+.++.   ..||.+.++..++...               ....+.|.++|++|....++.+|++...
T Consensus         2 ~~L~~~~~C~~CH~~~~~---g~gP~~~~l~~~~~~~---------------~~~~~~l~~~i~~p~~~~~~~~~~~~~~   63 (80)
T d1ynra1           2 EQLAKQKGCMACHDLKAK---KVGPAYADVAKKYAGR---------------KDAVDYLAGKIKKGGSGVWGSVPMPPQN   63 (80)
T ss_dssp             HHHHHHHTGGGTCCSSSC---SSSCCHHHHHHHHTTC---------------TTHHHHHHHHHHHCBCSSSCSSCBCCCS
T ss_pred             HHHHHcCCcHhhCCCCCC---CCCCCccchhhhcccc---------------chhHHHHHHHHHcccccccccccccccc
Confidence            678987 59999998853   3688887766544322               1246789999999998777766655556


Q ss_pred             CCHHHHHHHHHHHhhcC
Q psy14949         86 RKEKDREDLIAYLSTLH  102 (102)
Q Consensus        86 ls~~e~~~l~~yl~sl~  102 (102)
                      |||+|+++|++||+||+
T Consensus        64 lsd~ei~~l~~yi~sLk   80 (80)
T d1ynra1          64 VTDAEAKQLAQWILSIK   80 (80)
T ss_dssp             CCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            79999999999999986

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.81  E-value=8.2e-21  Score=104.66  Aligned_cols=80  Identities=25%  Similarity=0.392  Sum_probs=59.8

Q ss_pred             HhHHHHHHHh-cccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC-CccC
Q psy14949          4 ENGKKIFTRA-CAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG-TKMV   81 (102)
Q Consensus         4 ~~G~~lf~~~-C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~   81 (102)
                      ++|++||+.+ |++||+.++.   .++|.+..+..+....               ..+.++|..+|++|.....+ ..||
T Consensus         1 E~Gk~l~~~~~C~~CH~~~~~---g~gp~~~~l~~~~~~~---------------~~~~~~l~~~i~~~~~~~~~~~~Mp   62 (82)
T d1cora_           1 EDGEALFKSKPCAACHSIDAK---LVGPAFKEVAAKYAGQ---------------DGAADLLAGHIKNGSQGVWGPIPMP   62 (82)
T ss_dssp             CHHHHHHHHSTHHHHCCSSSC---SSSCCHHHHHHHSTTC---------------TTHHHHHHHHHHSCBCSSSSSSCBC
T ss_pred             CchHHHHhhCccHHHhCCccc---CcCCcchhhhhhcccc---------------chhHHHHHHHHhccccccccccccc
Confidence            4799999986 9999998854   3578776655443221               12467899999999876544 5676


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ... |||+|+++|++||+|||
T Consensus        63 ~~~-lsdeei~~la~Yi~SlK   82 (82)
T d1cora_          63 PNP-VTEEEAKILAEWILSQK   82 (82)
T ss_dssp             CCS-CCHHHHHHHHHHHHSCC
T ss_pred             ccC-CCHHHHHHHHHHHHhcC
Confidence            444 69999999999999986

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=99.81  E-value=1e-20  Score=113.29  Aligned_cols=82  Identities=32%  Similarity=0.498  Sum_probs=60.6

Q ss_pred             CcHHhHHHHHHH----hcccccCCCCCCC----CCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949          1 MSVENGKKIFTR----ACAQCHTANEGGA----NKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK   72 (102)
Q Consensus         1 ~d~~~G~~lf~~----~C~~CH~~~~~g~----~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (102)
                      ||+++|++||.+    +|.+||++++.+.    +.+||+|.++..+                    ++.++|..+|.+|.
T Consensus        25 GDa~~G~~lF~~~~~~~C~aCH~~~~~g~~~~~g~~gP~L~~ig~r--------------------~~~~~l~~~i~~p~   84 (138)
T d1h32b_          25 GDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILVNSK   84 (138)
T ss_dssp             CCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHHH--------------------SCHHHHHHHHHCHH
T ss_pred             CCHHHHHHHHhccCCCCcccCCCCCCcCcccccCCcCCcccccccc--------------------CCHHHHHHHHhCHH
Confidence            689999999975    4999999976542    3478888876433                    35778888888776


Q ss_pred             CCCCCCc----------------------c-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         73 KYIPGTK----------------------M-VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        73 ~~~~~~~----------------------m-~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ...+++.                      | .+...||++|+++|++||+||+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ei~dlvAYL~tL~  137 (138)
T d1h32b_          85 NVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT  137 (138)
T ss_dssp             HHSTTCSSCCTTCCSCCSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC
T ss_pred             hcCCCcccccceeccccccccccccccccccccccCCCHHHHHHHHHHHHHcc
Confidence            5443322                      2 3455689999999999999985

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=8.1e-21  Score=104.69  Aligned_cols=80  Identities=20%  Similarity=0.370  Sum_probs=60.2

Q ss_pred             HhHHHHHHHh-cccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC-CccC
Q psy14949          4 ENGKKIFTRA-CAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG-TKMV   81 (102)
Q Consensus         4 ~~G~~lf~~~-C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~   81 (102)
                      ++|+.||+++ |++||+.++   ..+||.+..+..+....               ..+.++|..+|++|.....+ ..||
T Consensus         1 Edg~~Lf~~~gC~~CH~~~g---~~~gP~~~~i~~~~~~~---------------~~~~~~l~~~i~~~~~~~~~~~~MP   62 (82)
T d351ca_           1 EDPEVLFKNKGCVACHAIDT---KMVGPAYKDVAAKFAGQ---------------AGAEAELAQRIKNGSQGVWGPIPMP   62 (82)
T ss_dssp             CCHHHHHHHTTGGGTBCSSS---BSSSCCHHHHHHHHTTC---------------TTHHHHHHHHHHHCBCSSSSSSCBC
T ss_pred             CCHHHHHhhCCchhhcCCcc---cCCCCcchhHHHhcccc---------------hhhHHHHHHHHHccccccccccccc
Confidence            4689999987 999999984   34688887765443321               12467899999999765544 4576


Q ss_pred             CCCCCCHHHHHHHHHHHhhcC
Q psy14949         82 FPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ... |||+|+++|++||+|||
T Consensus        63 ~~~-lsd~ei~~la~Yi~SlK   82 (82)
T d351ca_          63 PNA-VSDDEAQTLAKWVLSQK   82 (82)
T ss_dssp             CCS-CCHHHHHHHHHHHHTTC
T ss_pred             ccC-CCHHHHHHHHHHHHhcC
Confidence            444 69999999999999986

>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.81  E-value=3.8e-21  Score=106.79  Aligned_cols=81  Identities=23%  Similarity=0.297  Sum_probs=58.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      ||+++|+.+|. .|++||+.++.|.....|.|.+....                    +....|..|....+...+..+|
T Consensus         2 gD~~~Gk~l~~-~Ca~CHg~~G~g~~~~~P~L~g~~~~--------------------y~~~~l~~~~~g~r~~~~~~~m   60 (86)
T d1cnoa_           2 GDIEAGKAKAA-VCAACHGQNGISQVPIYPNLAGQKEQ--------------------YLVAALKAYKAGQRQGGQAPVM   60 (86)
T ss_dssp             CCHHHHHHHGG-GTHHHHCTTSCCSSTTSCCCTTCCHH--------------------HHHHHHHHHHTTCBCSTTHHHH
T ss_pred             CCHHHhHHHHH-HHHHhcCcccccccccCcccccchHH--------------------HHHHHHHHHHhccccCCcchhh
Confidence            79999999995 69999999987666667877764311                    1245566665544443334445


Q ss_pred             -CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 -VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 -~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                       ++...|||+||++|++||.+|.
T Consensus        61 ~~~~~~Lsd~di~~laaYi~slp   83 (86)
T d1cnoa_          61 QGQATALSDADIANLAAYYASNP   83 (86)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSC
T ss_pred             HHHHccCCHHHHHHHHHHHHhCC
Confidence             4556679999999999999973

>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]

Probab=99.80  E-value=1.3e-19  Score=100.71  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=55.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|+++|++||.++|++||+.++.+.... +.+........                ...+...+...++++..    .|+
T Consensus         1 Ad~~~G~~ly~~~Ca~CHg~~g~g~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~i~~g~~----~mp   59 (87)
T d1c6sa_           1 ADLANGAKVFSGNCAACHMGGGNVVMAN-KTLKKEALEQF----------------GMYSEDAIIYQVQHGKN----AMP   59 (87)
T ss_dssp             CCHHHHHHHHTTTGGGGCTTTCCSSSSS-CCSSSTTTTTS----------------SCCSHHHHHHHHSSCBT----TBC
T ss_pred             CcHHHHHHHHHHHChhhhhhcccccccC-CCccchhhhhh----------------ccCcHHHHHHHHHcCcc----ccc
Confidence            5899999999999999999887553332 22221111100                01246678888887763    344


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++|+++|++||.++
T Consensus        60 ~~~~~Ls~~ei~~v~aYi~~~   80 (87)
T d1c6sa_          60 AFAGRLTDEQIQDVAAYVLDQ   80 (87)
T ss_dssp             CCTTTSCSHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHH
Confidence            788888999999999999874

>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome ScyA
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.80  E-value=1.5e-19  Score=99.40  Aligned_cols=81  Identities=17%  Similarity=0.233  Sum_probs=53.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|+++|++||+++|++||+.++.|.+..++..... .+.                  ....+.+...+.++...+|  ++
T Consensus         1 Ad~~~G~~lY~~~Ca~CHg~~~~G~p~~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~~mp--~~   59 (81)
T d1kx7a_           1 ADLQDAEAIYNKACTVCHSMGVAGAPKSHNTADWE-PRL------------------AKGVDNLVKSVKTGLNAMP--PG   59 (81)
T ss_dssp             CCCSCHHHHHHHTTTSSTTTTCTTCCCSSCSTTTT-TTT------------------TTCSHHHHHHHHHCCSSSC--TT
T ss_pred             CcHHHHHHHHHHHHHHHccCCCCCCCCCCChhhhh-hcc------------------cccHHHHHHHHHhhccccc--cc
Confidence            47889999999999999998766533333222110 000                  1124457777777665444  12


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         81 VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .+...|||+||++|++||+..+
T Consensus        60 g~~~~Lsd~ei~~v~~Yi~~ak   81 (81)
T d1kx7a_          60 GMCTDCTDEDYKAAIEFMSKAK   81 (81)
T ss_dssp             TTCSSCCHHHHHHHHHHHSSCC
T ss_pred             ccccCCCHHHHHHHHHHHHhcC
Confidence            2446789999999999998764

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.78  E-value=8.1e-20  Score=103.53  Aligned_cols=78  Identities=21%  Similarity=0.237  Sum_probs=53.8

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ++++|++||.++|++||+.++.+.....|.+....                     .++.+.+..++.++.... ..|.+
T Consensus        14 ~~~~G~~ly~~~Ca~CHG~~g~g~~~~~~~~~~~~---------------------~~~~~~~~~~i~~g~~~~-~~MP~   71 (97)
T d1kb0a1          14 KVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMD---------------------ASYIENLPNFVFKGPAMV-RGMPD   71 (97)
T ss_dssp             GHHHHHHHHHHHTHHHHCSTTTSCCSSSCCGGGSC---------------------HHHHHTHHHHHSSCTTGG-GTCCC
T ss_pred             HHHHHHHHHHHHhHHhhCCCCCCCCCccccccccc---------------------ccchHHHHHHHHhccccc-CCCcc
Confidence            57899999999999999988765544444333211                     113455777777654221 12336


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q psy14949         82 FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl  101 (102)
                      |.+.||++|+++|++||+++
T Consensus        72 ~~~~Ls~~ei~~i~aYl~~~   91 (97)
T d1kb0a1          72 FTGKLSGDDVESLKAFIQGT   91 (97)
T ss_dssp             CTTTSCTTHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHh
Confidence            88888999999999999874

>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: p-Cresol methylhydroxylase, cytochrome c subunit
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=2.8e-19  Score=96.79  Aligned_cols=71  Identities=27%  Similarity=0.570  Sum_probs=54.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      .+..|++||.++|++||+.++.    .+|.|.+.                      .|+.+.|...|++++..||    +
T Consensus         2 q~~~G~~ly~~~Ca~CHg~~g~----~~p~l~~~----------------------~~~~~~i~~~i~~G~~~MP----~   51 (74)
T d1wvec1           2 QWGSGKNLYDKVCGHCHKPEVG----VGPVLEGR----------------------GLPEAYIKDIVRNGFRAMP----A   51 (74)
T ss_dssp             CSSSHHHHHHHTTHHHHSTTTC----SSCCCTTS----------------------CCCHHHHHHHHHHCBTTBC----C
T ss_pred             cHHHHHHHHHHHHHHHhcccCc----chhhcccc----------------------chhHHHHHHHHHhhccccc----c
Confidence            4568999999999999997743    36766541                      2357889999998874433    4


Q ss_pred             CC-CCCCHHHHHHHHHHHhhcC
Q psy14949         82 FP-GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~-~~ls~~e~~~l~~yl~sl~  102 (102)
                      |. ..||++|+++|++||++|.
T Consensus        52 ~~~~~lsd~ei~~l~~Yi~slp   73 (74)
T d1wvec1          52 FPASYVDDESLTQVAEYLSSLP   73 (74)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHSC
T ss_pred             cccccCCHHHHHHHHHHHHhCC
Confidence            53 4679999999999999973

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.78  E-value=1.3e-19  Score=101.36  Aligned_cols=81  Identities=20%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHh---CCC---CC
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQ---NPK---KY   74 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~---~~   74 (102)
                      ||+++|+++|. .|++||+.++.+.....|.+.+...                    .+....+..+..   ...   ..
T Consensus         2 gd~~~G~~l~~-~Ca~CHg~~G~g~~~~~p~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~   60 (92)
T d1m70a1           2 GDAEAGQGKVA-VCGACHGVDGNSPAPNFPKLAGQGE--------------------RYLLKQLQDIKAGSTPGAPEGVG   60 (92)
T ss_dssp             CCHHHHHTTCG-GGHHHHCTTSCCCCTTSCCCTTCCH--------------------HHHHHHHHHHHHHHSTTCCTTSS
T ss_pred             CCHHHhHHHHH-HHHHhCCCcccccchhhccccchhh--------------------HHHHHHHHHhhhhhhhhhhcccc
Confidence            79999999996 5999999997655555555543221                    111223333322   111   12


Q ss_pred             CCCCcc-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         75 IPGTKM-VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        75 ~~~~~m-~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ....+| +|...|||+||++|++||++|+
T Consensus        61 ~~~~~Mp~~~~~Lsd~ei~dl~aYi~sl~   89 (92)
T d1m70a1          61 RKVLEMTGMLDPLSDQDLEDIAAYFSSQK   89 (92)
T ss_dssp             CCCGGGTTTTTTCCHHHHHHHHHHHHHSC
T ss_pred             ccccchHHHHhhCCHHHHHHHHHHHHHCC
Confidence            233456 5777789999999999999986

>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=7.9e-19  Score=106.22  Aligned_cols=79  Identities=18%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCC
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVF   82 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~   82 (102)
                      +++|+.||..+|++||+.++.|  ..+|.|.+.....         .       ...+...+...|.++.   +++||++
T Consensus        46 v~~G~~lf~~~Ca~CHG~~g~G--~~~P~l~~~~~~~---------~-------~~~~~~~i~~~i~~G~---~~~Mp~~  104 (147)
T d2gc4d1          46 LPEAEELYAGMCSGCHGHYAEG--KIGPGLNDAYWTY---------P-------GNETDVGLFSTLYGGA---TGQMGPM  104 (147)
T ss_dssp             HHHHHHHHHHHTHHHHCTTSSC--SSSCCCSSSCCSS---------G-------GGGSHHHHHHHHHHCC---STTCCCC
T ss_pred             HHHHHHHHHHhcccccCcCCCC--CCcccCCCchhhh---------h-------hhhHHHHHHHHHHhhc---ccccccc
Confidence            6789999999999999988654  4577776532111         1       1224556777888765   3567888


Q ss_pred             CCCCCHHHHHHHHHHHhhcC
Q psy14949         83 PGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        83 ~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .+.|+++||++|++||++++
T Consensus       105 ~~~Ls~~ei~~lvaYi~sl~  124 (147)
T d2gc4d1         105 WGSLTLDEMLRTMAWVRHLY  124 (147)
T ss_dssp             TTTSCHHHHHHHHHHHHHTC
T ss_pred             ccCCCHHHHHHHHHHHHHhC
Confidence            88889999999999999874

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

Probab=99.77  E-value=1.7e-19  Score=100.26  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      |+++|++||+++|++||+.++.+. ..+|.+.......            ............+...++++..    .|++
T Consensus         1 Di~~G~~ly~~~Ca~CHg~~g~g~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~----~Mp~   63 (88)
T d1f1fa_           1 DVAAGASVFSANCAACHMGGRNVI-VANKTLSKSDLAK------------YLKGFDDDAVAAVAYQVTNGKN----AMPG   63 (88)
T ss_dssp             CHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHHHHHH------------HSTTTTTCHHHHHHHHHHHCBT----TBCC
T ss_pred             ChHHHHHHHHHHHHHhhcCcccCC-ccCCCCCccchhh------------hccccccchHHHHHHHHhcCcC----CCCc
Confidence            789999999999999999876432 1223222110000            0000112244556666776653    3447


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q psy14949         82 FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl  101 (102)
                      |...||++|+++|++||+++
T Consensus        64 ~~~~Lsd~ei~~v~aYi~~~   83 (88)
T d1f1fa_          64 FNGRLSPLQIEDVAAYVVDQ   83 (88)
T ss_dssp             CTTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHH
Confidence            88888999999999999875

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

Probab=99.76  E-value=1.9e-19  Score=100.36  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=53.4

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhh-cCccccHHHHHHHHhCCCCCCCCCc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN-KGITWSASTLDIYLQNPKKYIPGTK   79 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~   79 (102)
                      +|+++|++||..+|++||+.++.|.   +|......             ..... .........+...++++...    |
T Consensus         2 adl~~G~~ly~~~Ca~CHg~~g~g~---~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~g~~~----M   61 (89)
T d1ctja_           2 ADLALGKAVFDGNCAACHAGGGNNV---IPDHTLQK-------------AAIEQFLDGGFNIEAIVYQIENGKGA----M   61 (89)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSS---STTSCSSH-------------HHHHHHSTTCSSHHHHHHHHHHCBTT----B
T ss_pred             ccHHHHHHHHHHhchhccccccCcc---ccCCCCCc-------------cchhhhhcccccHHHHHHHHhcCcCC----C
Confidence            4789999999999999999876442   22111100             00000 01122456777888877633    3


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhc
Q psy14949         80 MVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        80 m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      ++|.+.||++||++|++||+++
T Consensus        62 p~~~~~Lsd~ei~~v~~Yi~~~   83 (89)
T d1ctja_          62 PAWDGRLDEDEIAGVAAYVYDQ   83 (89)
T ss_dssp             CCCBTTBCHHHHHHHHHHHHHH
T ss_pred             CccCCCCCHHHHHHHHHHHHHH
Confidence            3677788999999999999886

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.76  E-value=3.8e-19  Score=99.30  Aligned_cols=82  Identities=13%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|+++|++||+++|++||+.++.+... ++.+......              .......+...+...++++...    |+
T Consensus         1 Adi~~G~~ly~~~Ca~CHg~~g~g~~~-~~~~~~~~~~--------------~~~~~~~~~~~i~~~i~~g~~~----mp   61 (90)
T d1cyja_           1 ADLALGAQVFNGNCAACHMGGRNSVMP-EKTLDKAALE--------------QYLDGGFKVESIIYQVENGKGA----MP   61 (90)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSST-TSCSSHHHHH--------------HHSTTCSSHHHHHHHHHHCBTT----BC
T ss_pred             CcHHHHHHHHHHHCHHhhcccccccCC-CCCCCcchhh--------------hhhccCCcHHHHHHHHHcCcCC----CC
Confidence            589999999999999999877543221 2222110000              0001122456777788877632    33


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++||++|++||+++
T Consensus        62 ~~~~~Lsd~ei~~v~aYi~~~   82 (90)
T d1cyja_          62 AWADRLSEEEIQAVAEYVFKQ   82 (90)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHH
Confidence            677788999999999999874

>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Desulfovibrio vulgaris, different strains [TaxId: 881]

Probab=99.75  E-value=1.6e-19  Score=98.64  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             HhHHHHHHHhcccccCCCCCCCC-CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-C
Q psy14949          4 ENGKKIFTRACAQCHTANEGGAN-KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-V   81 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~~-~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-~   81 (102)
                      ++|++||+ +|++||+.+|.+.. ..+|.+.+....                    +....+..++...+...++..| +
T Consensus         1 A~G~~ly~-~Ca~CHG~~G~g~~~~~~p~l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~Mp~   59 (79)
T d1c53a_           1 ADGAALYK-SCVGCHGADGSKQAMGVGHAVKGQKAD--------------------ELFKKLKGYADGSYGGEKKAVMTN   59 (79)
T ss_pred             CCcHHHHH-HHHHhCCCcccccccccCccccccchH--------------------HHHHHHHHHHHHHHhccchhccHH
Confidence            46999996 69999999875432 335655543211                    1233344444444434445667 5


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q psy14949         82 FPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~~~ls~~e~~~l~~yl~sl  101 (102)
                      |...||++||++|++||++|
T Consensus        60 ~~~~Lsd~ei~~l~aYi~sL   79 (79)
T d1c53a_          60 LVKRYSDEEMKAMADYMSKL   79 (79)
T ss_pred             HHhcCCHHHHHHHHHHHHhC
Confidence            77888999999999999986

>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=4.5e-19  Score=102.91  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=55.1

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ++++|++||.++|++||+.++.|  ..||+|.....                   ...+.+.|..+|+++..   +.|++
T Consensus        30 ~~~~G~~ly~~~Ca~CHG~~g~G--~~gP~L~~~~~-------------------~~~~~~~l~~~I~~G~~---~~MP~   85 (112)
T d1nira1          30 EFNEAKQIYFQRCAGCHGVLRKG--ATGKPLTPDIT-------------------QQRGQQYLEALITYGTP---LGMPN   85 (112)
T ss_dssp             HHHHHHHHHHHHTHHHHTTTTCC--SSSSCCSHHHH-------------------HHHCHHHHHHHHHHCCS---SSCCC
T ss_pred             HHHHHHHHHHHHcccccccCccc--ccchhhhhhhh-------------------hhhhhhhhhhhhhhccc---ccCCC
Confidence            35789999999999999998643  35777642110                   01246789999998762   33335


Q ss_pred             CC--CCCCHHHHHHHHHHHhhcC
Q psy14949         82 FP--GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        82 ~~--~~ls~~e~~~l~~yl~sl~  102 (102)
                      |.  ..||++||++|++||+++.
T Consensus        86 ~~~~~~Lsd~ei~~l~~Yv~~~~  108 (112)
T d1nira1          86 WGSSGELSKEQITLMAKYIQHTP  108 (112)
T ss_dssp             STTTTSSCHHHHHHHHHHTTSCC
T ss_pred             ccccCCCCHHHHHHHHHHHHHCC
Confidence            64  3589999999999999863

>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Red alga (Porphyra yezoensis) [TaxId: 2788]

Probab=99.74  E-value=8.4e-19  Score=96.86  Aligned_cols=80  Identities=21%  Similarity=0.332  Sum_probs=53.1

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|+++|++||+.+|+.||+.++.+..  +|.+....              .+ ......+.+.+...++++...    |+
T Consensus         1 Adi~~G~~ly~~~Ca~CHg~~g~g~~--~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~g~~~----Mp   59 (85)
T d1gdva_           1 ADLDNGEKVFSANCAACHAGGNNAIM--PDKTLKKD--------------VL-EANSMNTIDAITYQVQNGKNA----MP   59 (85)
T ss_dssp             CHHHHHHHHHHHHTHHHHGGGCCSSS--TTSCCCHH--------------HH-HHTTCCSHHHHHHHHHHCBTT----BC
T ss_pred             CCHHHHHHHHHHHChHhhhcccCCCC--CCCCCchh--------------hh-hcccccCHHHHHHHHhcCCCC----CC
Confidence            47899999999999999998754321  12111100              00 001112456777888877633    33


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|...||++|+++|++||+++
T Consensus        60 ~~~~~Lsd~ei~~v~~Yi~~~   80 (85)
T d1gdva_          60 AFGGRLVDEDIEDAANYVLSQ   80 (85)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHH
Confidence            687888999999999999875

>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.74  E-value=9.8e-19  Score=100.10  Aligned_cols=76  Identities=17%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-   80 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-   80 (102)
                      ++++|+.||.++|++||+.++.| ....|.+....                     ..+.+.+..++.++...  ...| 
T Consensus        19 ~~~~G~~ly~~~Ca~CHg~~g~g-~~~~p~l~~~~---------------------~~~~~~~~~~i~~g~~~--~~~Mp   74 (104)
T d1kv9a1          19 QVQAGKQLYGQFCSVCHGMGTIS-GGLIPDLRQSS---------------------DATREHFQQIVLQGALK--PLGMP   74 (104)
T ss_dssp             HHHHHHHHHHHHTHHHHCGGGCC-CSSSCCGGGCC---------------------HHHHHTHHHHHHHCTTG--GGTCC
T ss_pred             HHHHHHHHHHHHhhhhccCCCCC-CCCCCcccccc---------------------ccchHHHHHHHHhhhcc--cccCC
Confidence            35789999999999999988654 33455554321                     11345566667665422  2334 


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q psy14949         81 VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|.+.||++||++|++||+++
T Consensus        75 ~~~~~Lsd~ei~~v~aYi~s~   95 (104)
T d1kv9a1          75 SFDDSLKPEEVEQIKLYVMSR   95 (104)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHh
Confidence            677788999999999999985

>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=5.1e-19  Score=97.17  Aligned_cols=78  Identities=18%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             HHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC-CCccCCCCC
Q psy14949          7 KKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP-GTKMVFPGL   85 (102)
Q Consensus         7 ~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~m~~~~~   85 (102)
                      +.+++.+|++||++++.   ..+|.+..+..+....               ....++|..++++|....+ ...||....
T Consensus         3 eL~~~~~C~~CH~~~~~---g~gP~~~~i~~~~~~~---------------~~~~~~l~~~i~~~~~~~~~~~~Mp~~~~   64 (81)
T d1a56a_           3 DLAKKNNCIACHQVETK---VVGPALKDIAAKYADK---------------DDAATYLAGKIKGGSSGVWGQIPMPPNVN   64 (81)
T ss_dssp             HHHHHHSHHHHBCSSCB---SSSCCHHHHHHHHTTS---------------SSHHHHHHHHHHHCBSSSSSSCCBCSCCS
T ss_pred             HHHHcCCcHhhCCCcCc---Cccccccchhhhcccc---------------ccchhHHHHHHhcccccccCCcccccccC
Confidence            34444579999999853   4578877665443221               1146789999999886543 345643334


Q ss_pred             CCHHHHHHHHHHHhhcC
Q psy14949         86 RKEKDREDLIAYLSTLH  102 (102)
Q Consensus        86 ls~~e~~~l~~yl~sl~  102 (102)
                      ||++|+++|++||+||+
T Consensus        65 Lsd~ei~~l~~Yl~slk   81 (81)
T d1a56a_          65 VSDADAKALADWILTLK   81 (81)
T ss_dssp             SSSHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            79999999999999986

>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2.3e-19  Score=106.52  Aligned_cols=83  Identities=22%  Similarity=0.221  Sum_probs=55.5

Q ss_pred             HhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC-------CC
Q psy14949          4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY-------IP   76 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~   76 (102)
                      ++|++||+ +|++||+.+|.|....+|.|.+......               ......+.+...+.++...       ..
T Consensus         2 A~G~~lY~-~Ca~CHG~~G~G~~~~~p~l~~~~~~~~---------------~~~~~~~~~~~~i~~g~~~~~~~~g~~~   65 (131)
T d1c52a_           2 ADGAKIYA-QCAGCHQQNGQGIPGAFPPLAGHVAEIL---------------AKEGGREYLILVLLYGLQGQIEVKGMKY   65 (131)
T ss_dssp             CCHHHHTH-HHHHHHCTTSCCBTTTBCCCTTHHHHHH---------------TSTTHHHHHHHHHHHCEEEEEEETTEEE
T ss_pred             CchHHHHH-HHHHHcCCCCCCCCCCCCccCCCccccc---------------cccCCHHHHHHHHHcccccccccCCccc
Confidence            47999996 7999999998776666777754211100               0112355666666654321       11


Q ss_pred             CCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         77 GTKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        77 ~~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ..||++.+.|||+||++|++||++.|
T Consensus        66 ~~m~~~~~~LsD~eI~av~~YIr~~~   91 (131)
T d1c52a_          66 NGVMSSFAQLKDEEIAAVLNHIATAW   91 (131)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHTT
T ss_pred             ccccccccCCCHHHHHHHHHHHHHHc
Confidence            24678777889999999999998753

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.73  E-value=9.5e-20  Score=100.57  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=48.2

Q ss_pred             CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      |++.+|++||+++|++||+.++.|....++....              .......   -..+.+...+.++...||    
T Consensus         2 g~~~~G~~ly~~~Ca~CHg~~g~G~~~~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~MP----   60 (83)
T d1cc5a_           2 GGARSGDDVVAKYCNACHGTGLLNAPKVGDSAAW--------------KTRADAK---GGLDGLLAQSLSGLNAMP----   60 (83)
T ss_dssp             CCSSCSHHHHHHTTHHHHTTTTTTCCCTTCHHHH--------------HHHHHHH---TSSTTTHHHHHHCBTTBC----
T ss_pred             CCcchHHHHHHHHHHHHhcCCCCCCCCCCChhhc--------------ccccccc---cCHHHHHHHhhhcccccc----
Confidence            5788999999999999999887654333332110              0000000   011233444444443222    


Q ss_pred             CC--CCCCCHHHHHHHHHHHhhc
Q psy14949         81 VF--PGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        81 ~~--~~~ls~~e~~~l~~yl~sl  101 (102)
                      +|  ...|||+||++|++||++|
T Consensus        61 ~~g~~~~Lsd~ei~~vv~Yi~~L   83 (83)
T d1cc5a_          61 PKGTCADCSDDELKAAIGKMSGL   83 (83)
T ss_dssp             SSSSCSSCCHHHHHHHHHHHHCC
T ss_pred             cccccCCCCHHHHHHHHHHHhhC
Confidence            33  3568999999999999986

>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Green alga (Cladophora glomerata) [TaxId: 162068]

Probab=99.73  E-value=1.2e-18  Score=97.29  Aligned_cols=80  Identities=20%  Similarity=0.251  Sum_probs=50.7

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCC
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVF   82 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~   82 (102)
                      +++|++||.++|++||+.++.+... +|.+.....              ............+...++++...    |++|
T Consensus         6 ~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~----MP~~   66 (91)
T d1ls9a_           6 LADGKKVFAGNCAACHLGGNNSVLA-DKTLKKDAI--------------EKYLEGGLTLEAIKYQVNNGKGA----MPAW   66 (91)
T ss_dssp             HHHHHHHHHHHTHHHHGGGCCSSST-TSCSSHHHH--------------HHHSTTCSCHHHHHHHHHHCBTT----BCCC
T ss_pred             HHHHHHHHHHhChHhhccccccccC-CCCCChhhh--------------hccccccchHHHHHHHhhcCcCC----Cccc
Confidence            5789999999999999987653221 222211100              00001122455666777766532    3367


Q ss_pred             CCCCCHHHHHHHHHHHhhc
Q psy14949         83 PGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        83 ~~~ls~~e~~~l~~yl~sl  101 (102)
                      ...||++||++|++||+++
T Consensus        67 ~~~Lsdeei~~l~aYi~~~   85 (91)
T d1ls9a_          67 ADRLDEDDIEAVSNYVYDQ   85 (91)
T ss_dssp             TTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHH
Confidence            7788999999999999875

>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.71  E-value=2.2e-18  Score=94.35  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=52.3

Q ss_pred             hHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-CCC
Q psy14949          5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM-VFP   83 (102)
Q Consensus         5 ~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m-~~~   83 (102)
                      .|.++|.++|++||+.++.|.....|.|.+...                    .+....|..+....+   .+..| ++.
T Consensus         2 p~~~l~~~~Ca~CHG~~G~g~~~~~p~l~~~~~--------------------~~~~~~l~~~~~g~~---~~~~M~~~~   58 (80)
T d1fcdc1           2 PTAEMLTNNCAGCHGTHGNSVGPASPSIAQMDP--------------------MVFVEVMEGFKSGEI---ASTIMGRIA   58 (80)
T ss_dssp             CCHHHHHHTTTTTSCGGGCCCSSSSCCCSSCCH--------------------HHHHHHHHHHHHTCS---CCSSHHHHH
T ss_pred             chHHHHHHHHHHhCcCcccCcccccchhhhhhH--------------------HHHHHHHHHHHHhhh---hhhhHHHHH
Confidence            467889899999999998766666777765321                    112344555544332   34456 576


Q ss_pred             CCCCHHHHHHHHHHHhhcC
Q psy14949         84 GLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        84 ~~ls~~e~~~l~~yl~sl~  102 (102)
                      ..|||+||++|++||.+++
T Consensus        59 ~~Lsd~ei~~la~Y~~sq~   77 (80)
T d1fcdc1          59 KGYSTADFEKMAGYFKQQT   77 (80)
T ss_dssp             TTSCHHHHHHHHHHHHTSC
T ss_pred             ccCCHHHHHHHHHHHHhCC
Confidence            7789999999999999874

>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=4.8e-18  Score=100.47  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV   81 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~   81 (102)
                      ++++|++||.++|++||+.++.|  ..||+|....                .   ..++.+.|+..|++++   ++.|.+
T Consensus        45 ~~~~G~~ly~~~Ca~CHg~~g~G--~~gp~l~~~~----------------~---~~~~~~~l~~~I~~G~---~~~MP~  100 (127)
T d1qksa1          45 QYNEANKIYFERCAGCHGVLRKG--ATGKALTPDL----------------T---RDLGFDYLQSFITYAS---PAGMPN  100 (127)
T ss_dssp             HHHHHHHHHHHHTHHHHCTTSSC--SSSCCCCHHH----------------H---HHHCHHHHHHHHTTCC---CCCCTT
T ss_pred             HHHHHHHHHHHHhHHhcCCcCCC--CcCCCccchh----------------h---hccCHHHHHHHHHhcc---cccCcc
Confidence            35689999999999999988654  3567664210                0   0224667889998875   233335


Q ss_pred             CC--CCCCHHHHHHHHHHHhhc
Q psy14949         82 FP--GLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        82 ~~--~~ls~~e~~~l~~yl~sl  101 (102)
                      |.  +.||++||++|++||+++
T Consensus       101 fg~~~~Lsd~ei~~l~~Yi~~~  122 (127)
T d1qksa1         101 WGTSGELSAEQVDLMANYLLLD  122 (127)
T ss_dssp             TSCCCCCCHHHHHHHHHHHHSC
T ss_pred             cccCCCCCHHHHHHHHHHHHhC
Confidence            65  358999999999999875

>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c-L (MoxG)
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.71  E-value=4.5e-17  Score=98.53  Aligned_cols=79  Identities=20%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCC
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVF   82 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~   82 (102)
                      +++|++||..+|++||+.++.|..  ++.+....         +.+.       ...+...++..+.++.   .+.|++|
T Consensus        31 v~~G~~ly~~~Ca~CHg~~g~G~~--~~~~~~~~---------~~~~-------~~~~~~~~~~~i~~G~---~~~MP~~   89 (149)
T d2c8sa1          31 LRNGESLFATSCSGCHGHLAEGKL--GPGLNDNY---------WTYP-------SNTTDVGLFATIFGGA---NGMMGPH   89 (149)
T ss_dssp             HHHHHHHHHHHTHHHHCTTSSCSS--SCCSSSSC---------CSSG-------GGGSHHHHHHHHHTCT---TSSSCSC
T ss_pred             HHHHHHHHHHhCccccCCCCCCCc--ccCCCCcc---------cccc-------cchhhhHHHHHHhccc---ccccccc
Confidence            568999999999999998865422  23332211         1100       0123456777777764   2334467


Q ss_pred             CCCCCHHHHHHHHHHHhhcC
Q psy14949         83 PGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        83 ~~~ls~~e~~~l~~yl~sl~  102 (102)
                      ...||++||++|++||++++
T Consensus        90 ~~~Lsdeei~~ivaYvr~l~  109 (149)
T d2c8sa1          90 NENLTPDEMLQTIAWIRHLY  109 (149)
T ss_dssp             CCCSCHHHHHHHHHHHHHTC
T ss_pred             ccCCCHHHHHHHHHHHHHhc
Confidence            77789999999999999863

>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.70  E-value=1.6e-18  Score=97.46  Aligned_cols=80  Identities=11%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             HHhHHHHHHHhcccccCCCCCCCCC--CCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC--C-
Q psy14949          3 VENGKKIFTRACAQCHTANEGGANK--VGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP--G-   77 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~~~g~~~--~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~-   77 (102)
                      +++|++||.++|++||+.+|.|...  ..|.+.+...                    .+....|..|....+....  + 
T Consensus        10 a~~G~~ly~~~Ca~CHg~~G~g~~~~~~~p~l~g~~~--------------------~yl~~~l~~~~~g~r~~~~~~~~   69 (94)
T d1fcdc2          10 ADTGAKLHDKYCEKCHVEGGKPLADEEDYHILAGQWT--------------------PYLQYAMSDFREERRPMEKKMAS   69 (94)
T ss_dssp             HHHHHHHHHHHTTTTSHHHHCCCCSSSCCCCCTTCCH--------------------HHHHHHHHHHHTTSSCCCHHHHH
T ss_pred             HHHhHHHHHHHhHHhcCcCCCCCCccccccccccCCh--------------------HHHHHHHHHHHhCCCcCcchhHH
Confidence            5789999999999999988754321  2343333210                    1123445554443332111  1 


Q ss_pred             CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949         78 TKMVFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        78 ~~m~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .|+++...|||+||++|++||.+++
T Consensus        70 ~M~~~~~~LSd~di~alaaY~~Sqk   94 (94)
T d1fcdc2          70 KLRELLKAEGDAGLDALFAFYASQQ   94 (94)
T ss_dssp             HHHTTGGGSTHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC
Confidence            2446777889999999999999986

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=99.69  E-value=1.8e-17  Score=98.52  Aligned_cols=85  Identities=27%  Similarity=0.332  Sum_probs=52.5

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC------
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI------   75 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------   75 (102)
                      ++++|++||..+|++||+.++   ...+|.............+            .......+..+++++....      
T Consensus        25 ~~~~Gk~lf~~~Ca~CH~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~~~~   89 (135)
T d1e29a_          25 QFTNGQKIFVDTCTQCHLQGK---TKTNNNVSLGLADLAGAEP------------RRDNVLALVEFLKNPKSYDGEDDYS   89 (135)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGC---BSSSSSCSSSHHHHHTSSS------------CCSSHHHHHHHHHSCBCTTSCSBCT
T ss_pred             HHHHHHHHHHHhhHHhcCCCC---CCCCCccccccccccccCC------------cchhhhHHHhhhcccchhhhhhhHH
Confidence            578999999999999998543   2223332221110000000            1124677888888765321      


Q ss_pred             -------CCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         76 -------PGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        76 -------~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                             +..+|+....||++|+++|++||+++
T Consensus        90 ~~~~~~~~~~~mp~~~~Lsdedi~~vaaYi~~q  122 (135)
T d1e29a_          90 ELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIA  122 (135)
T ss_dssp             TTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred             HhhccccCCCCCCccCCCCHHHHHHHHHHHHhc
Confidence                   23456555567999999999999874

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=99.68  E-value=1.6e-17  Score=98.15  Aligned_cols=85  Identities=21%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC------
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI------   75 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------   75 (102)
                      ++++|++||+.+|++||+.++.+.   +|............            .....+.+.+..|++++....      
T Consensus        25 ~~~~Gk~lf~~~Ca~CH~~~g~g~---~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~   89 (131)
T d1mz4a_          25 QYLEGKRLFQYACASCHVGGITKT---NPSLDLRTETLALA------------TPPRDNIEGLVDYMKNPTTYDGEQEIA   89 (131)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCTT---CGGGCCCHHHHHTS------------SSCCSSHHHHHHHHHSCBCTTSSSBCT
T ss_pred             HHHHHHHHHHHHhHHHcCCCCCCC---CCcccccccccccc------------cCcccccccccccccCcccccccchhh
Confidence            468999999999999998764332   22222111100000            011235778899998875321      


Q ss_pred             -------CCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         76 -------PGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        76 -------~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                             +...||....|||+|+++|++||+++
T Consensus        90 ~~~~~~~~~~~MP~f~~Lsdeei~av~aYi~~~  122 (131)
T d1mz4a_          90 EVHPSLRSADIFPKMRNLTEKDLVAIAGHILVE  122 (131)
T ss_dssp             TTSCCGGGTTTSGGGTTCCHHHHHHHHHHHHHH
T ss_pred             hhcccccCCCCCCcccCCCHHHHHHHHHHHHhc
Confidence                   23457533447999999999999765

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

Probab=99.68  E-value=3e-17  Score=96.69  Aligned_cols=85  Identities=22%  Similarity=0.290  Sum_probs=51.3

Q ss_pred             cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC-------
Q psy14949          2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY-------   74 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------   74 (102)
                      ++++|++||..+|++||+.++.+... ++.+........              ....++...+..+++++...       
T Consensus        23 ~~~~G~~lf~~~Ca~CH~~~g~g~~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (129)
T d1f1ca_          23 EIKKGQQVFNAACAQCHALGVTRTNP-DVNLSPEALALA--------------TPPRDNIAALVDYIKNPTTYDGFVEIS   87 (129)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCTTCS-SSCSSHHHHHTS--------------SSCCCSHHHHHHHHHSCBCTTSCSBCT
T ss_pred             HHHHHHHHHHHhhHHHcCCCCCCCCC-cccccccccccc--------------CCCccccchhhhhhcCcccccccccce
Confidence            47899999999999999876432211 122211100000              00122456677777765431       


Q ss_pred             ------CCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         75 ------IPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        75 ------~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                            .+..+|+....|||+|+++|++||+++
T Consensus        88 ~~~~~~~~~~~mp~~~~Lsdedi~ai~aYi~~~  120 (129)
T d1f1ca_          88 ELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQ  120 (129)
T ss_dssp             TTSCSTTCTTTCGGGSSCCHHHHHHHHHHHHHH
T ss_pred             eecccccCCCCCCccccCCHHHHHHHHHHHHHc
Confidence                  123456544557999999999999885

>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Ectothiorhodospira halophila [TaxId: 1053]

Probab=99.65  E-value=2.7e-17  Score=89.64  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             hHHHHHHH----hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949          5 NGKKIFTR----ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM   80 (102)
Q Consensus         5 ~G~~lf~~----~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m   80 (102)
                      +|++||.+    +|++||+.++.|.+..+|......                    .....+.+...+.++..    .|+
T Consensus         1 dG~~iy~~~~~~~CasCHg~~g~G~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~----~MP   56 (78)
T d1gksa_           1 DGESIYINGTAPTCSSCHDRGVAGAPELNAPEDWAD--------------------RPSSVDELVESTLAGKG----AMP   56 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTTGGGCCCTTCHHHHHT--------------------SCCCHHHHHHHHHHCBT----TBC
T ss_pred             CHHHHHhhccchhhHHHhccCCCCCCCCCChhHccc--------------------cchhHHHHHHHhhhccc----ccC
Confidence            49999986    699999987655433333221100                    01134556666666653    344


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q psy14949         81 VFPGLRKEKDREDLIAYLST  100 (102)
Q Consensus        81 ~~~~~ls~~e~~~l~~yl~s  100 (102)
                      +|.+.||++||++|++||++
T Consensus        57 a~g~~LsdeeI~~v~~Yi~~   76 (78)
T d1gksa_          57 AYDGRADREDLVKAIEYMLS   76 (78)
T ss_dssp             CCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHH
Confidence            78888999999999999976

>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.63  E-value=9.4e-17  Score=89.59  Aligned_cols=77  Identities=29%  Similarity=0.410  Sum_probs=53.3

Q ss_pred             CcHHhHHHHHHH--------hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949          1 MSVENGKKIFTR--------ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK   72 (102)
Q Consensus         1 ~d~~~G~~lf~~--------~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   72 (102)
                      +++++|+.||+.        .|++||+.++.+. ...|.|.++...+                    ....|..|....+
T Consensus         5 a~~~~G~~iy~~G~~~~~~~~C~~CHG~~G~g~-~~~P~LaGq~~~Y--------------------l~~qL~~f~~g~R   63 (90)
T d1h1oa2           5 AGAKEGKAIFNQGVTNEQIPACMECHGSDGQGA-GPFPRLAGQRYGY--------------------IIQQLTYFHNGTR   63 (90)
T ss_dssp             TTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCCB-TTBCCCTTCCHHH--------------------HHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHcCCcccCCchhhhcCCCccCCC-CCCCccCCCCHHH--------------------HHHHHHHHHcCCc
Confidence            467899999986        3999999987643 3347777643111                    2445555554433


Q ss_pred             CCCCCCcc-CCCCCCCHHHHHHHHHHHhhc
Q psy14949         73 KYIPGTKM-VFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        73 ~~~~~~~m-~~~~~ls~~e~~~l~~yl~sl  101 (102)
                         .+.+| ++...||++||++|++||.+|
T Consensus        64 ---~~~~M~~~a~~lsd~ei~~la~Y~asL   90 (90)
T d1h1oa2          64 ---VNTLMNQIAKNITVAQMKDVAAYLSSL   90 (90)
T ss_dssp             ---CCHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred             ---CchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence               34456 565667999999999999986

>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.58  E-value=9.3e-16  Score=86.76  Aligned_cols=80  Identities=28%  Similarity=0.389  Sum_probs=52.7

Q ss_pred             HHhHHHHHHH--------hcccccCCCCCCCC-CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC
Q psy14949          3 VENGKKIFTR--------ACAQCHTANEGGAN-KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK   73 (102)
Q Consensus         3 ~~~G~~lf~~--------~C~~CH~~~~~g~~-~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (102)
                      +++|++||+.        .|++||+.++.|.. ...|.|.++...+                    ....|..|....+.
T Consensus         8 ~~~G~~l~~~G~~~~~i~~C~~CHg~~G~g~~~~~~P~L~G~~~~Y--------------------l~~qL~~~~~g~r~   67 (98)
T d1m70a2           8 AKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAY--------------------TAKQLTDFREGNRT   67 (98)
T ss_dssp             HHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGGTBCCCTTCCHHH--------------------HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHcCCcccCCchhhhcCCCccccCcCCCCCccccchHHH--------------------HHHHHHHHHhcccc
Confidence            5789999986        49999999876532 2357776543111                    23445555443332


Q ss_pred             CC-CCCcc-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949         74 YI-PGTKM-VFPGLRKEKDREDLIAYLSTLH  102 (102)
Q Consensus        74 ~~-~~~~m-~~~~~ls~~e~~~l~~yl~sl~  102 (102)
                      .. ++..| ++...||++||.+|++||.+|+
T Consensus        68 ~~~~~~~M~~~~~~lsd~di~~la~YiasL~   98 (98)
T d1m70a2          68 NDGDTMIMRGVAAKLSNKDIEALSSYIQGLH   98 (98)
T ss_dssp             TTTTTCHHHHHHTTCCHHHHHHHHHHHHTCC
T ss_pred             CCchhhhHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            22 23456 4656679999999999999985

>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.46  E-value=3.1e-15  Score=81.78  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=44.2

Q ss_pred             HhcccccCCCCCCCC-CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC-CCCCcc-CCCCCCCH
Q psy14949         12 RACAQCHTANEGGAN-KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY-IPGTKM-VFPGLRKE   88 (102)
Q Consensus        12 ~~C~~CH~~~~~g~~-~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~m-~~~~~ls~   88 (102)
                      .+|++||+.+|.|.. ...|.|.+...                    .+....+..+....+.. .++..| +|...|||
T Consensus         3 ~~Ca~CHG~~G~G~~~~~~P~l~g~~~--------------------~~~~~~~~~~~~g~r~~~~~~~~M~~~~~~LSd   62 (82)
T d1h1oa1           3 SDCMVCHGMTGRDTLYPIVPRLAGQHK--------------------SYMEAQLKAYKDHSRADQNGEIYMWPVAQALDS   62 (82)
T ss_dssp             GGTHHHHCBTTBCCSSTTSCCCTTCCH--------------------HHHHHHHHHHHTTCCCCHHHHHHTHHHHHTCCH
T ss_pred             chhHHhCCCcCCCCcccccccccCCcH--------------------HHHHHHHHHhhhhhhhcccccccchHHHhhCCH
Confidence            579999999976533 34566654321                    11233444444433321 122346 57667899


Q ss_pred             HHHHHHHHHHhhcC
Q psy14949         89 KDREDLIAYLSTLH  102 (102)
Q Consensus        89 ~e~~~l~~yl~sl~  102 (102)
                      +||++|++||++|+
T Consensus        63 ~eI~~la~Yi~sl~   76 (82)
T d1h1oa1          63 AKITALADYFNAQK   76 (82)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999985

>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.16  E-value=8.1e-11  Score=71.38  Aligned_cols=49  Identities=16%  Similarity=0.304  Sum_probs=30.2

Q ss_pred             CCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         44 PGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      .+...+.++.+.|...+.+...++.....         ....||++|+++|++||+||
T Consensus        85 rnv~~TaPY~HdG~~~tL~evi~~~~~~~---------~~~~Lt~~e~~~LvaFL~tL  133 (160)
T d1nmla2          85 RNIELTAPYFHSGAVWSLEEAVAVMGTAQ---------LGTELNNDEVKSIVAFLKTL  133 (160)
T ss_dssp             TTGGGCCSBTTTCCBCCHHHHHHHTCCTT---------TTCCCCHHHHHHHHHHHGGG
T ss_pred             cCccccCccccCCCcCCHHHHHHHHhhhc---------cccCCCHHHHHHHHHHHHHc
Confidence            33334444556666666665555442211         11236999999999999998

>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=4.1e-11  Score=72.67  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             CCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         45 GFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      +...+.++.+.|...+.++...+..+...         ...|+++|+.+|++||++|
T Consensus        88 nv~~taPY~HdG~~~TL~dvi~~~~~~~~---------~~~Ls~~e~~~LvaFL~sL  135 (159)
T d1eb7a2          88 NVALTAPYFHSGQVWELKDAVAIMGNAQL---------GKQLAPDDVENIVAFLHSL  135 (159)
T ss_dssp             TGGGSCSBTTTTCBCCHHHHHHHHTTSSS---------SSCCCHHHHHHHHHHHHTT
T ss_pred             cccccCccccCCCcCCHHHHHHHhccccc---------cCCCCHHHHHHHHHHHHhc
Confidence            33334444566766676665555543221         1236899999999999998

>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.03  E-value=1.7e-10  Score=69.76  Aligned_cols=17  Identities=24%  Similarity=0.431  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHHHHHhhc
Q psy14949         85 LRKEKDREDLIAYLSTL  101 (102)
Q Consensus        85 ~ls~~e~~~l~~yl~sl  101 (102)
                      .||++|+.+|++||++|
T Consensus       116 ~Ls~~E~~~LvaFL~sL  132 (158)
T d1iqca2         116 EFNKDEVSKIVAFLKTL  132 (158)
T ss_dssp             CCCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            36999999999999998

>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.42  E-value=3.1e-07  Score=49.72  Aligned_cols=17  Identities=35%  Similarity=0.970  Sum_probs=15.3

Q ss_pred             hHHHHHHHhcccccCCC
Q psy14949          5 NGKKIFTRACAQCHTAN   21 (102)
Q Consensus         5 ~G~~lf~~~C~~CH~~~   21 (102)
                      .|++|++++|..||+.+
T Consensus         2 tG~~lv~~~C~~CHs~~   18 (85)
T d1pbya1           2 TGEEVLQNACAACHVQH   18 (85)
T ss_dssp             CHHHHHHHTGGGTSCBC
T ss_pred             CHHHHHHHHHHHhCCcc
Confidence            48999999999999865

>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Pseudomonas putida [TaxId: 303]

Probab=98.30  E-value=1.8e-07  Score=50.58  Aligned_cols=18  Identities=28%  Similarity=0.796  Sum_probs=16.0

Q ss_pred             HhHHHHHHHhcccccCCC
Q psy14949          4 ENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         4 ~~G~~lf~~~C~~CH~~~   21 (102)
                      +.|++|++.+|..||+.+
T Consensus         1 e~G~~lv~~~C~~CHs~~   18 (84)
T d1jmxa1           1 EQGPSLLQNKCMGCHIPE   18 (84)
T ss_dssp             CCHHHHHHHHHBTTBCEE
T ss_pred             CcHHHHHHHHHHHhcCch
Confidence            369999999999999866

>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: SHP, an oxygen binding cytochrome c
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.10  E-value=9.5e-07  Score=49.35  Aligned_cols=81  Identities=20%  Similarity=0.353  Sum_probs=42.2

Q ss_pred             cHHhHHHHHHH----------hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhC-
Q psy14949          2 SVENGKKIFTR----------ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQN-   70 (102)
Q Consensus         2 d~~~G~~lf~~----------~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-   70 (102)
                      ++++|+++|..          .|++||+.+.-   ..|-..++-  ...+.++...      . ...-+.+.+.+|+++ 
T Consensus        21 sa~rG~~lf~~~~~~~~g~~~sCasCH~~~p~---~~G~~~TgK--~I~PlAps~n------p-~RftD~akVEKWF~RN   88 (112)
T d1dw0a_          21 DAERGRALFLSTQTGGKPDTPSCTTCHGADVT---RAGQTRTGK--EIAPLAPSAT------P-DRFTDSARVEKWLGRN   88 (112)
T ss_dssp             CHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTT---SCEECTTSC--EECCSSTTTS------T-TTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcccCCCCCCCccccccCCCCC---cCCcccCCC--CccccCCccC------h-hhhcCHHHHHHHHHhh
Confidence            57899999963          49999987631   111111110  0001111110      0 011145566666642 


Q ss_pred             CCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949         71 PKKYIPGTKMVFPGLRKEKDREDLIAYLSTL  101 (102)
Q Consensus        71 ~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl  101 (102)
                      -..+       +...=|.+|..++++||.++
T Consensus        89 C~dV-------lgReCTa~EKgD~l~~L~sq  112 (112)
T d1dw0a_          89 CNSV-------IGRDCTPGEKADLLAWLAAQ  112 (112)
T ss_dssp             HHHH-------HSSCCCHHHHHHHHHHHHTC
T ss_pred             chhh-------hccccCHHHhhhHHHHHhcC
Confidence            2211       11234799999999999874

>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c''
species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]

Probab=97.96  E-value=4.9e-06  Score=46.96  Aligned_cols=16  Identities=31%  Similarity=0.478  Sum_probs=14.2

Q ss_pred             CCHHHHHHHHHHHhhc
Q psy14949         86 RKEKDREDLIAYLSTL  101 (102)
Q Consensus        86 ls~~e~~~l~~yl~sl  101 (102)
                      =|.+|..++++||.++
T Consensus       104 CTa~EKgD~l~~L~sq  119 (124)
T d1gu2a_         104 CSPSEKANFIAYLLTE  119 (124)
T ss_dssp             CCHHHHHHHHHHHHHC
T ss_pred             CCHHHhhhHHHHHHhc
Confidence            3799999999999885

>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=97.73  E-value=1.6e-06  Score=49.08  Aligned_cols=14  Identities=14%  Similarity=0.169  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHhhc
Q psy14949         88 EKDREDLIAYLSTL  101 (102)
Q Consensus        88 ~~e~~~l~~yl~sl  101 (102)
                      .+|+.+|.+||..+
T Consensus        85 s~e~~aL~aYi~~~   98 (111)
T d1h32a2          85 SPEFVALELYVASR   98 (111)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            46899999999875

>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.67  E-value=9e-06  Score=50.13  Aligned_cols=19  Identities=21%  Similarity=0.908  Sum_probs=17.1

Q ss_pred             HHhHHHHHHHhcccccCCC
Q psy14949          3 VENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~~C~~CH~~~   21 (102)
                      +.+|.++|.+.|++||++.
T Consensus        26 LQRGaqvf~nyC~gCHsl~   44 (195)
T d1ppjd1          26 IRRGFQVYKQVCSSCHSMD   44 (195)
T ss_dssp             HHHHHHHHHHTGGGTCCCT
T ss_pred             HHhHHHHHHHHHhhccchh
Confidence            5799999999999999954

>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=9.3e-06  Score=50.18  Aligned_cols=20  Identities=30%  Similarity=0.903  Sum_probs=17.7

Q ss_pred             cHHhHHHHHHHhcccccCCC
Q psy14949          2 SVENGKKIFTRACAQCHTAN   21 (102)
Q Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (102)
                      .+.+|.++|.+.|++||++.
T Consensus        28 sLQRG~qvy~~~C~~CHsl~   47 (199)
T d3cx5d1          28 SIRRGYQVYREVCAACHSLD   47 (199)
T ss_dssp             HHHHHHHHHHHTGGGTCCCT
T ss_pred             HHHHHHHHHHHHhhhcccch
Confidence            36799999999999999975

>d1eb7a1 a.3.1.5 (A:1-164) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=7.6e-05  Score=44.68  Aligned_cols=19  Identities=42%  Similarity=0.871  Sum_probs=14.5

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++-|+.||..         .|++||..+
T Consensus        31 ~~LGk~LF~D~~LS~~~~~SCaSCH~~~   58 (164)
T d1eb7a1          31 RELGKKLFFDPRLSRSHVLSCNTCHNVG   58 (164)
T ss_dssp             HHHHHHHHHCGGGSTTSCCCHHHHSCTT
T ss_pred             HHHHHHHhCCcccCCCCCCCCccccCcc
Confidence            3569999963         399999754

>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.05  E-value=6.1e-05  Score=45.20  Aligned_cols=19  Identities=42%  Similarity=0.801  Sum_probs=14.6

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++-|+.||-.         .|++||..+
T Consensus        31 veLGk~LFfD~~LS~~~~~SCaSCH~~~   58 (166)
T d1nmla1          31 VELGKMEFFEPRLSSSHLISCNTCHNVG   58 (166)
T ss_dssp             HHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred             HHHHHHHhcCcccCCCCCcccccccChh
Confidence            4579999962         499999654

>d1h32a1 a.3.1.8 (A:1-150) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=97.03  E-value=7e-05  Score=44.21  Aligned_cols=15  Identities=13%  Similarity=0.326  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHhhc
Q psy14949         87 KEKDREDLIAYLSTL  101 (102)
Q Consensus        87 s~~e~~~l~~yl~sl  101 (102)
                      ..+++.+|.+||..+
T Consensus       127 ~S~em~aL~aYi~~~  141 (150)
T d1h32a1         127 IGPDMTAMVALIASV  141 (150)
T ss_dssp             TSHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            347899999999876

>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.90  E-value=7.4e-05  Score=44.09  Aligned_cols=19  Identities=37%  Similarity=0.817  Sum_probs=14.5

Q ss_pred             HHhHHHHHHH---------hcccccCCC
Q psy14949          3 VENGKKIFTR---------ACAQCHTAN   21 (102)
Q Consensus         3 ~~~G~~lf~~---------~C~~CH~~~   21 (102)
                      ++-|+.||..         .|++||..+
T Consensus        19 ~~LGk~LF~D~~LS~~~~~SCasCH~~~   46 (150)
T d1iqca1          19 AELGKMLFFDPRLSKSGFISCNSCHNLS   46 (150)
T ss_dssp             HHHHHHHHTCGGGSSSSCCCHHHHSBTT
T ss_pred             HHHHHHHhCCcccCCCCCCCcccccChh
Confidence            4569999952         499999654

>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.08  E-value=0.046  Score=28.09  Aligned_cols=12  Identities=33%  Similarity=1.027  Sum_probs=9.7

Q ss_pred             HHHHHhcccccC
Q psy14949          8 KIFTRACAQCHT   19 (102)
Q Consensus         8 ~lf~~~C~~CH~   19 (102)
                      +.|.+-|+.||+
T Consensus         9 ~~~~~mCaRCHS   20 (80)
T d1pbya2           9 TSMTQTCGRCHS   20 (80)
T ss_dssp             HHHHHHHSSSSC
T ss_pred             hHHHHHHHhhhh
Confidence            456678999997

>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Pseudomonas putida [TaxId: 303]

Probab=88.94  E-value=0.063  Score=27.28  Aligned_cols=11  Identities=27%  Similarity=1.062  Sum_probs=9.0

Q ss_pred             HHHHhcccccC
Q psy14949          9 IFTRACAQCHT   19 (102)
Q Consensus         9 lf~~~C~~CH~   19 (102)
                      .|.+-|+.||+
T Consensus        10 ~~~~mCaRCHS   20 (77)
T d1jmxa2          10 QLSETCGRCHS   20 (77)
T ss_dssp             HHHHHHSSSSC
T ss_pred             HHHHHHHhhhh
Confidence            36678999997