Psyllid ID: psy15007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MDTTLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHEEEcccccccHHHHHcccccccEEccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
mdttlepgldnhftiPDYIVLLTMLVVSCAIGFFvgmcgekqttsddfllgsssmgtlPMALSLAASQ
Flexible Loop (DISEMBL)
mdttlepgldnhFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ
Low Complexity Region (SEG)
MDTTLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ
Disordered region (IsUnstruct)
********LDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQT****F********************
Disordered Region (DISOPRED)
************FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS*
Disordered Region (DISEMBL)
MDTTLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ
Disordered Region (DISPRO)
*********DNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTTLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q5BL81	620	Sodium-coupled monocarbox	yes	N/A	0.897	0.098	0.475	8e-09
Q7SYH5	622	Sodium-coupled monocarbox	N/A	N/A	0.897	0.098	0.475	1e-08
Q8BYF6	611	Sodium-coupled monocarbox	yes	N/A	0.941	0.104	0.447	3e-08
Q8N695	610	Sodium-coupled monocarbox	yes	N/A	0.808	0.090	0.490	7e-08
Q3ZMH1	610	Sodium-coupled monocarbox	yes	N/A	0.808	0.090	0.436	5e-07
Q63008	618	Sodium/iodide cotransport	no	N/A	0.911	0.100	0.435	1e-06
Q99PN0	618	Sodium/iodide cotransport	no	N/A	0.911	0.100	0.435	2e-06
A7MBD8	617	Sodium-coupled monocarbox	no	N/A	0.838	0.092	0.385	2e-05
Q49B93	619	Sodium-coupled monocarbox	no	N/A	0.838	0.092	0.421	2e-05
P83740	604	Putative sodium-dependent	no	N/A	0.75	0.084	0.431	3e-05

>sp|Q5BL81|SC5A8_XENTR Sodium-coupled monocarboxylate transporter 1 OS=Xenopus tropicalis GN=slc5a8 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 37/61 (60%)

Query: 7  PGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAA 66
          PG    FT+ DY+V   ML++S  IG +    G  Q TS DFL+G  SM  +P+ALSL A
Sbjct: 4  PGNIGSFTVWDYVVFALMLLISAVIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTA 63

Query: 67 S 67
          S
Sbjct: 64 S 64

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane.
Xenopus tropicalis (taxid: 8364)

>sp|Q7SYH5|SC5A8_XENLA Sodium-coupled monocarboxylate transporter 1 OS=Xenopus laevis GN=slc5a8 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 37/61 (60%)

Query: 7  PGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAA 66
          PG    FT+ DY+V   ML++S  IG +    G  Q TS DFL+G  SM  +P+ALSL A
Sbjct: 4  PGNIGSFTVWDYLVFALMLLISAVIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTA 63

Query: 67 S 67
          S
Sbjct: 64 S 64

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane.

Xenopus laevis (taxid: 8355)

>sp|Q8BYF6|SC5A8_MOUSE Sodium-coupled monocarboxylate transporter 1 OS=Mus musculus GN=Slc5a8 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 1  MDTTLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPM 60
          MD + + G    F + DY+V   ML++S AIG +    G  Q TS DFL+G  SM  +P+
Sbjct: 1  MDASRDIG---SFVVWDYVVFAGMLLISAAIGIYYAFAGGGQQTSKDFLMGGRSMSAVPV 57

Query: 61 ALSLAAS 67
          ALSL AS
Sbjct: 58 ALSLTAS 64

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane. May be responsible for the absorption of D-lactate and monocarboxylate drugs from the intestinal tract. May play a critical role in the entry of L-lactate and ketone bodies into neurons by a process driven by an electrochemical Na(+) gradient and hence contribute to the maintenance of the energy status and function of neurons.

Mus musculus (taxid: 10090)

>sp|Q8N695|SC5A8_HUMAN Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 34/55 (61%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          F + DY+V   MLV+S AIG +    G  Q TS DFL+G   M  +P+ALSL AS
Sbjct: 10 FVVWDYVVFAGMLVISAAIGIYYAFAGGGQQTSKDFLMGGRRMTAVPVALSLTAS 64

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane. May be responsible for the absorption of D-lactate and monocarboxylate drugs from the intestinal tract. Acts as a tumor suppressor, suppressing colony formation in colon cancer, prostate cancer and glioma cell lines. May play a critical role in the entry of L-lactate and ketone bodies into neurons by a process driven by an electrochemical Na(+) gradient and hence contribute to the maintenance of the energy status and function of neurons.

Homo sapiens (taxid: 9606)

>sp|Q3ZMH1|SC5A8_DANRE Sodium-coupled monocarboxylate transporter 1 OS=Danio rerio GN=slc5a8 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          F++ DY+V   +++V+  IG F    G K+ +SD+FLLG   M  +P+ALSL AS
Sbjct: 11 FSVWDYVVFAGLILVAAGIGLFQSFRGRKEASSDEFLLGGRQMTAVPVALSLTAS 65

Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane.

Danio rerio (taxid: 7955)

>sp|Q63008|SC5A5_RAT Sodium/iodide cotransporter OS=Rattus norvegicus GN=Slc5a5 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 6  EPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65
          E G    F   DY V  TML+VS  IG +VG+    Q ++DDF  G   +  +P+ LSLA
Sbjct: 5  EAGARATFGAWDYGVFATMLLVSTGIGLWVGLARGGQRSADDFFTGGRQLAAVPVGLSLA 64

Query: 66 AS 67
          AS
Sbjct: 65 AS 66

Mediates iodide uptake in the thyroid gland.

Rattus norvegicus (taxid: 10116)

>sp|Q99PN0|SC5A5_MOUSE Sodium/iodide cotransporter OS=Mus musculus GN=Slc5a5 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 6  EPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65
          E G    F   DY V  TML+VS  IG +VG+    Q ++DDF  G   +  +P+ LSLA
Sbjct: 5  EAGARATFGPWDYGVFATMLLVSTGIGLWVGLARGGQRSADDFFTGGRQLAAVPVGLSLA 64

Query: 66 AS 67
          AS
Sbjct: 65 AS 66

Mediates iodide uptake in the thyroid gland.

Mus musculus (taxid: 10090)

>sp|A7MBD8|SC5AC_BOVIN Sodium-coupled monocarboxylate transporter 2 OS=Bos taurus GN=SLC5A12 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 11 NHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
           +F + DY+V   + ++S  IG F  +   K+ TS +FL+G   M   P+ALSL AS
Sbjct: 4  KNFAVWDYVVFAALFIISSGIGVFYAIKERKKATSREFLVGGRQMSFGPVALSLTAS 60

Acts as an electroneutral and low-affinity sodium (Na(+))-dependent sodium-coupled solute transporter. Catalyzes the transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, nicotinate, propionate, butyrate and beta-D-hydroxybutyrate. May be responsible for the first step of reabsorption of monocarboxylates from the lumen of the proximal tubule of the kidney and the small intestine. May play also a role in monocarboxylates transport in the retina. Mediates electroneutral uptake of lactate, with a stoichiometry of 2 Na(+) for each lactate.

Bos taurus (taxid: 9913)

>sp|Q49B93|SC5AC_MOUSE Sodium-coupled monocarboxylate transporter 2 OS=Mus musculus GN=Slc5a12 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 11 NHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
           +F   DY+V   + V+S  IG F  +   K+TTS +FL+G   M   P+ALSL AS
Sbjct: 4  KNFEAWDYVVFAGLFVISSGIGVFFAIKERKKTTSREFLVGGRQMSFGPVALSLTAS 60

Acts as an electroneutral and low-affinity sodium (Na(+))-dependent sodium-coupled solute transporter. Catalyzes the transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, nicotinate, propionate, butyrate and beta-D-hydroxybutyrate. May be responsible for the first step of reabsorption of monocarboxylates from the lumen of the proximal tubule of the kidney and the small intestine. May play also a role in monocarboxylates transport in the retina. Mediates electroneutral uptake of lactate, with a stoichiometry of 2 Na(+) for each lactate.

Mus musculus (taxid: 10090)

>sp|P83740|SC5A6_DROME Putative sodium-dependent multivitamin transporter OS=Drosophila melanogaster GN=CG32669 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          DY +L  +L++S AIG +    G KQ+T+ ++LL   SM   P+A SL AS
Sbjct: 8  DYTILAVVLIISVAIGIYYRFVGGKQSTTTEYLLADRSMNVAPVAFSLMAS 58

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
270007206	659	hypothetical protein TcasGA2_TC013748 [T	0.852	0.088	0.689	1e-14
91082285	632	PREDICTED: similar to AGAP005795-PA [Tri	0.852	0.091	0.689	1e-14
383851180	1205	PREDICTED: uncharacterized protein LOC10	0.911	0.051	0.596	1e-12
307177539	1217	Putative sodium-dependent multivitamin t	0.911	0.050	0.612	3e-12
332018423	617	Sodium-coupled monocarboxylate transport	0.911	0.100	0.612	1e-11
328778498	1207	PREDICTED: hypothetical protein LOC41355	0.823	0.046	0.625	3e-11
345493450	638	PREDICTED: LOW QUALITY PROTEIN: sodium-c	0.970	0.103	0.558	4e-11
357621003	630	hypothetical protein KGM_11153 [Danaus p	0.647	0.069	0.75	7e-10
432094402	183	Sodium-coupled monocarboxylate transport	0.808	0.300	0.490	3e-07
82524384	620	sodium-coupled monocarboxylate transport	0.897	0.098	0.475	3e-07

>gi|270007206|gb|EFA03654.1| hypothetical protein TcasGA2_TC013748 [Tribolium castaneum]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 46/58 (79%)

Query: 10  DNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
            N F+ PDY+VL TML+VSC IG F G  GEK ++SDDFLLG SSMGT PMA+SLAAS
Sbjct: 46  KNTFSWPDYLVLGTMLLVSCGIGVFYGFIGEKHSSSDDFLLGGSSMGTFPMAMSLAAS 103

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082285|ref|XP_973784.1| PREDICTED: similar to AGAP005795-PA [Tribolium castaneum]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 46/58 (79%)

Query: 10 DNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
           N F+ PDY+VL TML+VSC IG F G  GEK ++SDDFLLG SSMGT PMA+SLAAS
Sbjct: 19 KNTFSWPDYLVLGTMLLVSCGIGVFYGFIGEKHSSSDDFLLGGSSMGTFPMAMSLAAS 76

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851180|ref|XP_003701117.1| PREDICTED: uncharacterized protein LOC100879178 [Megachile rotundata]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%)

Query: 6   EPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65
            P   ++F+ PDY+VL  ML++SC IG F G   +KQ TS DFLLG SSMGT PMA+SLA
Sbjct: 619 HPIFLHYFSWPDYMVLAAMLLISCLIGTFYGFFAKKQETSQDFLLGGSSMGTFPMAMSLA 678

Query: 66  AS 67
           AS
Sbjct: 679 AS 680

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177539|gb|EFN66650.1| Putative sodium-dependent multivitamin transporter [Camponotus floridanus]

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query: 6   EPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65
            P L N+F+  DY VL TML+VSC IG F G   +KQ TS DFLLG S+MGT P A+SLA
Sbjct: 633 HPILVNYFSWADYTVLATMLLVSCLIGTFYGFFAKKQETSQDFLLGGSTMGTFPTAMSLA 692

Query: 66  AS 67
           AS
Sbjct: 693 AS 694

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018423|gb|EGI59017.1| Sodium-coupled monocarboxylate transporter 1 [Acromyrmex echinatior]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%)

Query: 6  EPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLA 65
           P L ++F+  DY VL  ML+VSC IG F G   +KQ TS DFLLG SSMGT+PMA+SLA
Sbjct: 33 HPTLLHYFSWADYTVLGMMLLVSCLIGTFYGFFSKKQETSQDFLLGGSSMGTIPMAMSLA 92

Query: 66 AS 67
          AS
Sbjct: 93 AS 94

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778498|ref|XP_396997.4| PREDICTED: hypothetical protein LOC413556 [Apis mellifera]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 41/56 (73%)

Query: 12  HFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
           +F+  DY VL  ML++SC IG F G   +KQ TS DFLLG SSMGT PMA+SLAAS
Sbjct: 627 YFSWVDYTVLAAMLIISCLIGTFYGFIAKKQETSQDFLLGGSSMGTFPMAMSLAAS 682

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493450|ref|XP_003427076.1| PREDICTED: LOW QUALITY PROTEIN: sodium-coupled monocarboxylate transporter 2-like [Nasonia vitripennis]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 2   DTTLE--PGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLP 59
           D  LE  P L+N+F   DY+VL  ML+++C IG F     +KQ TS DFLLG S MGT P
Sbjct: 40  DKCLEDHPTLENYFDWGDYMVLAAMLLITCLIGTFYACFSKKQETSQDFLLGGSDMGTFP 99

Query: 60  MALSLAAS 67
           MA+SLAAS
Sbjct: 100 MAMSLAAS 107

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621003|gb|EHJ72989.1| hypothetical protein KGM_11153 [Danaus plexippus]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 35/44 (79%)

Query: 24 MLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          ML++SC IG F G  GEKQ T DDFLLG SSMGT PMALSLAAS
Sbjct: 1  MLIISCGIGVFYGYFGEKQLTGDDFLLGGSSMGTFPMALSLAAS 44

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432094402|gb|ELK25979.1| Sodium-coupled monocarboxylate transporter 1 [Myotis davidii]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          F + DY+V   ML++S AIG +    G+KQ TS DFL+G   M  +P+ALSL AS
Sbjct: 10 FVVWDYVVFAGMLLISAAIGIYYAFAGDKQQTSKDFLMGGRRMSAVPVALSLTAS 64

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|82524384|ref|NP_988910.2| sodium-coupled monocarboxylate transporter 1 [Xenopus (Silurana) tropicalis] gi|82194177|sp|Q5BL81.1|SC5A8_XENTR RecName: Full=Sodium-coupled monocarboxylate transporter 1; AltName: Full=Electrogenic sodium monocarboxylate cotransporter; AltName: Full=Solute carrier family 5 member 8 gi|60688376|gb|AAH90570.1| solute carrier family 5 (iodide transporter), member 8 [Xenopus (Silurana) tropicalis]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 37/61 (60%)

Query: 7  PGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAA 66
          PG    FT+ DY+V   ML++S  IG +    G  Q TS DFL+G  SM  +P+ALSL A
Sbjct: 4  PGNIGSFTVWDYVVFALMLLISAVIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTA 63

Query: 67 S 67
          S
Sbjct: 64 S 64

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
MGI|MGI:2384916	611	Slc5a8 "solute carrier family	0.941	0.104	0.447	4.7e-08
RGD|1564146	611	Slc5a8 "solute carrier family	0.941	0.104	0.447	4.7e-08
UNIPROTKB|F1P5L0	613	SLC5A8 "Uncharacterized protei	0.808	0.089	0.490	9.9e-08
UNIPROTKB|Q8N695	610	SLC5A8 "Sodium-coupled monocar	0.808	0.090	0.490	1.6e-07
UNIPROTKB|E2RI16	612	SLC5A8 "Uncharacterized protei	0.808	0.089	0.472	2.1e-07
FB|FBgn0039872	622	salt "salty dog" [Drosophila m	0.911	0.099	0.430	2.1e-07
ZFIN|ZDB-GENE-050913-86	603	slc5a6 "solute carrier family	0.926	0.104	0.365	5.4e-07
ZFIN|ZDB-GENE-061110-98	610	slc5a8l "solute carrier family	0.808	0.090	0.436	5.5e-07
UNIPROTKB|C8KIL7	611	SMCT1 "Sodium-dependent monoca	0.808	0.090	0.454	9.1e-07
UNIPROTKB|F1SRH7	611	SLC5A8 "Uncharacterized protei	0.808	0.090	0.436	9.1e-07

MGI|MGI:2384916 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 30/67 (44%), Positives = 40/67 (59%)

Query:     1 MDTTLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPM 60
             MD + + G    F + DY+V   ML++S AIG +    G  Q TS DFL+G  SM  +P+
Sbjct:     1 MDASRDIG---SFVVWDYVVFAGMLLISAAIGIYYAFAGGGQQTSKDFLMGGRSMSAVPV 57

Query:    61 ALSLAAS 67
             ALSL AS
Sbjct:    58 ALSLTAS 64

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1564146 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 30/67 (44%), Positives = 40/67 (59%)

Query:     1 MDTTLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPM 60
             MD + + G    F + DY+V   ML++S AIG +    G  Q TS DFL+G  SM  +P+
Sbjct:     1 MDASRDIG---SFVVWDYVVFAGMLLISAAIGIYYAFAGGGQQTSKDFLMGGRSMSAVPV 57

Query:    61 ALSLAAS 67
             ALSL AS
Sbjct:    58 ALSLTAS 64

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1P5L0 SLC5A8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 9.9e-08, P = 9.9e-08
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query:    13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
             F++ DY+V   ML+VS  IG +    G  Q TS DFL+G  SM  +P+ALSL AS
Sbjct:    10 FSVWDYVVFAAMLLVSAVIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTAS 64

GO:0005215 "transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8N695 SLC5A8 "Sodium-coupled monocarboxylate transporter 1" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 27/55 (49%), Positives = 34/55 (61%)

Query:    13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
             F + DY+V   MLV+S AIG +    G  Q TS DFL+G   M  +P+ALSL AS
Sbjct:    10 FVVWDYVVFAGMLVISAAIGIYYAFAGGGQQTSKDFLMGGRRMTAVPVALSLTAS 64

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E2RI16 SLC5A8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/55 (47%), Positives = 34/55 (61%)

Query:    13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
             F + DY+V   ML++S AIG +    G  Q TS DFL+G   M  +P+ALSL AS
Sbjct:    10 FAVWDYVVFAAMLLISAAIGIYYAFAGGGQQTSKDFLMGGRRMTAVPVALSLTAS 64

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

FB|FBgn0039872 salt "salty dog" [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 28/65 (43%), Positives = 40/65 (61%)

Query:     4 TLEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALS 63
             TLE   D HF++ DYIV   ML  S  IG + G   + + T++++L G   M TLP+A+S
Sbjct:    19 TLE---DLHFSLTDYIVFSLMLSASAGIGVYFGFFSKAKNTTEEYLQGGKRMPTLPVAIS 75

Query:    64 LAASQ 68
             L +SQ
Sbjct:    76 LVSSQ 80

GO:0008507 "sodium:iodide symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-050913-86 slc5a6 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 23/63 (36%), Positives = 40/63 (63%)

Query:     5 LEPGLDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSL 64
             ++P    +FT+ DY++   +LV S +IG +    G +Q+T+ +FL+   SM  LP++LSL
Sbjct:     1 MDPAGHKYFTVIDYVIFGLLLVASMSIGLYYAFTGGRQSTTQEFLIADRSMKCLPLSLSL 60

Query:    65 AAS 67
              A+
Sbjct:    61 MAT 63

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-061110-98 slc5a8l "solute carrier family 5 (iodide transporter), member 8-like" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query:    13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
             F++ DY+V   +++V+  IG F    G K+ +SD+FLLG   M  +P+ALSL AS
Sbjct:    11 FSVWDYVVFAGLILVAAGIGLFQSFRGRKEASSDEFLLGGRQMTAVPVALSLTAS 65

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015355 "secondary active monocarboxylate transmembrane transporter activity" evidence=IDA

UNIPROTKB|C8KIL7 SMCT1 "Sodium-dependent monocarboxylate cotransporter" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query:    13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
             F + DY+V   ML++S  IG +    G  Q TS DFL+G   M  +P+ALSL AS
Sbjct:    10 FVVWDYVVFAGMLLISAVIGIYYAFAGGGQQTSKDFLMGGRRMTAVPVALSLTAS 64

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1SRH7 SLC5A8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 9.1e-07, P = 9.1e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query:    13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
             F + DY+V   ML++S  IG +    G  Q TS DFL+G   M  +P+A+SL AS
Sbjct:    10 FLVWDYVVFAAMLLISAVIGIYYAFAGGGQQTSKDFLMGGRRMTAMPVAMSLTAS 64

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
cd11492	522	cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and	8e-16
cd11519	541	cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotr	2e-12
cd11505	536	cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotra	5e-12
cd11504	527	cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransp	3e-10
cd11503	535	cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter N	5e-09
cd11520	529	cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotr	1e-07
cd10326	477	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and	1e-06
cd11494	481	cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg	3e-05
COG0591	493	COG0591, PutP, Na+/proline symporter [Amino acid t	5e-04
cd11475	464	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter	0.002
cd10322	455	cd10322, SLC5sbd, Solute carrier 5 family, sodium/	0.002

>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

 Score = 69.0 bits (170), Expect = 8e-16
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query: 16 PDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
           DY+V   ML++S  IG + G  G KQ T++++LLG  SM   P+ALSL AS 
Sbjct: 1  VDYVVFAAMLLISAGIGIYFGFFGGKQKTTEEYLLGGRSMSVFPVALSLLASF 53

NIS (encoded by the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and -2. SMCT1(encoded by the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (encoded by the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 522

>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and related proteins; solute-binding domain

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 29/55 (52%), Positives = 36/55 (65%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          FT+ DY+V   ML+VS AIG +    G  Q TS DFL+G  SM  +P+ALSL AS
Sbjct: 4  FTVWDYVVFALMLLVSAAIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTAS 58

SMCT1 is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. Human SMCT1 (hSMCT1, also called AIT) is encoded by the tumor suppressor gene SLC5A8. Its expression is under the control of the C/EBP transcription factor. Its tumor-suppressive role is related to uptake of butyrate, propionate, and pyruvate, these latter are inhibitors of histone deacetylases. SMCT1 is expressed in the colon, small intestine, kidney, thyroid gland, retina, and brain. SMCT1 may contribute to the intestinal/colonic and oral absorption of monocarboxylate drugs. SMCT1 also mediates iodide transport from thyrocyte into the colloid lumen in thyroid gland and through transporting l-lactate and ketone bodies helps maintain the energy status and the function of neurons. In the kidney its expression is limited to the S3 segment of the proximal convoluted tubule (in contrast to the low-affinity monocarboxylate transporter SMCT2, belonging to a different family, which is expressed along the entire length of the tubule). In the retina, SMCT1 and SMCT2 may play a differential role in monocarboxylate transport in a cell type-specific manner, SMCT1 is expressed predominantly in retinal neurons and in retinal pigmented epithelial (RPE) cells. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 541

>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and 2 and related proteins; solute-binding domain

 Score = 58.2 bits (141), Expect = 5e-12
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          FT+ DY+V   ML++S  IG +    G  Q TS DFL+G  SM  +P+ALSL AS
Sbjct: 4  FTVWDYVVFALMLLISAGIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTAS 58

SMCT1 is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. Human SMCT1 (hSMCT1, also called AIT) is encoded by the tumor suppressor gene SLC5A8. SMCT1 is expressed in the colon, small intestine, kidney, thyroid gland, retina, and brain. SMCT1 may contribute to the intestinal/colonic and oral absorption of monocarboxylate drugs. It also mediates iodide transport from thyrocyte into the colloid lumen in thyroid gland and, through transporting L-lactate and ketone bodies, helps maintain the energy status and the function of neurons. SMCT2 is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. hSMCT2 is encoded by the SLC5A12 gene. SMCT2 is expressed in the kidney, small intestine, skeletal muscle, and retina. In the kidney, SMCT2 may initiate lactate absorption in the early parts of the tubule, SMCT1 in the latter parts of the tubule. In the retina, SMCT1 and SMCT2 may play a differential role in monocarboxylate transport in a cell type-specific manner. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 536

>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and related proteins; solute-binding domain

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          F+  DY+V + +LV S  IG +    G +Q T+ +FL+    MG LP+ALSL A+
Sbjct: 1  FSTVDYVVFVLLLVASAGIGLYYACSGGRQRTTQEFLMADRKMGCLPVALSLLAT 55

This multivitamin transporter SMVT (product of the SLC5A6 gene) transports biotin, pantothenic acid and lipoate, and is essential for mediating biotin uptake into mammalian cells. SMVT is expressed in the placenta, intestine, heart, brain, lung, liver, kidney and pancreas. Biotin may regulate its own cellular uptake through participation in holocarboxylase synthetase-dependent chromatin remodeling events at SMVT promoter loci. The cis regulatory elements, Kruppel-like factor 4 and activator protein-2, regulate the activity of the human SMVT promoter in the intestine. Glycosylation of the hSMVT is important for its transport function. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 527

>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related proteins; solute-binding domain

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 26/51 (50%), Positives = 31/51 (60%)

Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          DY V   ML+VS  IG FVG+    Q TSDDF  G   M  +P+ LSL+AS
Sbjct: 2  DYGVFALMLLVSTGIGLFVGLSRGGQKTSDDFFTGGRRMAAVPVGLSLSAS 52

NIS (product of the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. NIS is expressed in the thyroid, colon, ovary, and in human breast cancers. It mediates the active transport and the concentration of iodide from the blood into thyroid follicular cells, a fundamental step in thyroid hormone biosynthesis, and is the basis of radioiodine therapy for thyroid cancer. Mutation in the SLC5A5 gene can result in a form of thyroid hormone dysgenesis. Human NIS exists mainly as a dimer stabilized by a disulfide bridge. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 535

>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          F   DY+V   + +VS  IG F  +   K+ TS +FL+G   M   P+ALSL AS
Sbjct: 4  FVAWDYVVFAGLFLVSSGIGVFFAIKERKKATSKEFLVGGRQMSCGPVALSLTAS 58

SMCT2 is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2) is encoded by the SLC5A12 gene. SMCT2 is expressed in the kidney, small intestine, skeletal muscle, and retina. In the kidney, it is expressed in the apical membrane of the proximal convoluted tubule, along the entire length of the tubule (in contrast to the high-affinity monocarboxylate transporter SMCT1, belonging to a different family, which is limited to the S3 segment of the tubule). SMCT2 may initiate lactate absorption in the early parts of the tubule. In the retina, SMCT1 and SMCT2 may play a differential role in monocarboxylate transport in a cell type-specific manner, SMCT2 is expressed exclusively in Muller cells. Nicotine transport by hSMCT2 is inhibited by several non-steroidal anti-inflammatory drugs. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 529

>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
          DY+V+   L++   IG +      K  +++DF LG   M    +A S+ A+
Sbjct: 1  DYLVIALYLLILLLIGIYTS---RKNKSNEDFFLGGRQMPWYLVAFSMIAT 48

NIS (product of the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and 2. SMCT1(the product of the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (product of the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 477

>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
          D++VL+  L+     G + G         +D+ LG  SM   P+ LS+ A+Q
Sbjct: 2  DWVVLIGYLLGILVYGLYKG---RGNKNQEDYFLGGRSMPWWPIGLSVMATQ 50

Proteins belonging to the same subfamily as this uncharacterized subgroup include i) NIS, which transports I-, and other anions including ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin, pantothenic acid and lipoate, and iii) the Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1 is a high-affinity transporter while SMCT2 is a low-affinity transporter. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 481

>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
            +   I+ L  L++   IG +      K  + +D+ LG  S+G    ALS AAS 
Sbjct: 1  IMLILLIIFLIYLILMLLIGLYAY---RKTKSLEDYFLGGRSLGPFVYALSAAASD 53

Length = 493

>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain

 Score = 34.0 bits (79), Expect = 0.002
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 18 YIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAAS 67
           I  +  L++   IG +      K  T  D+ LG  S+G    ALS  AS
Sbjct: 1  LITFIVYLLLMLGIGIYSYR---KTKTLSDYFLGGRSLGPWVTALSAGAS 47

Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 464

>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain

 Score = 34.0 bits (79), Expect = 0.002
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 17 DYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ 68
          D I+++  L++   IG +      K  +S+D+ L   S+G   +AL+LAA+ 
Sbjct: 2  DLIIVIVYLLILLGIGLYSRK---KVKSSEDYFLAGRSLGPFVLALTLAATN 50

This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease. Length = 455

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG2349|consensus	585		99.39
PRK09395	551	actP acetate permease; Provisional	99.37
PRK12488	549	acetate permease; Provisional	99.33
PRK15419	502	proline:sodium symporter PutP; Provisional	99.33
PRK09442	483	panF sodium/panthothenate symporter; Provisional	99.3
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	99.24
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	99.2
PRK10484	523	putative transporter; Provisional	99.18
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	99.14
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	99.06
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	98.94
COG4145	473	PanF Na+/panthothenate symporter [Coenzyme metabol	98.31
COG4146	571	Predicted symporter [General function prediction o	97.22
COG4147	529	DhlC Predicted symporter [General function predict	96.31
KOG3761|consensus	591		93.53
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	87.8

>KOG2349|consensus

Probab=99.39  E-value=4.8e-14  Score=106.87  Aligned_cols=53  Identities=36%  Similarity=0.593  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         15 IPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        15 ~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      +.||.|+++|++++.+||+|+.++++++ +.+|||+|||+|+|||+|+|++|||
T Consensus         8 ~~d~~v~~l~~~~~~~ig~~~~~~~~~~-t~~~y~l~gr~m~~~Pv~~SL~aS~   60 (585)
T KOG2349|consen    8 AADYSVFVLYFLLVMAIGLWFGFRTKRG-TVEEYFLGGRSMVWLPVAASLFASN   60 (585)
T ss_pred             ccchhHHHHHHHHhhhheeeEEEEcCCc-cHhhhhhcCCcceEEEeehhhhhhh
Confidence            8999999999999999999999886555 9999999999999999999999996

>PRK09395 actP acetate permease; Provisional

Probab=99.37  E-value=4.6e-13  Score=99.68  Aligned_cols=57  Identities=14%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007          9 LDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus         9 ~~~~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      |+..+++.|+.++++|+++++++|+|.+   ||+++.+|||+|||++|||++++|++||+
T Consensus        28 ~~~~~~~~~~~i~~~y~~~~l~iG~~~~---r~~~s~~df~~agr~l~~~~~~~si~At~   84 (551)
T PRK09395         28 EKQPTNWQAIIMFLIFVVFTLGITYWAA---KRTRSASDFYTAGGGITGFQNGLAIAGDY   84 (551)
T ss_pred             hhcCCcHHHHHHHHHHHHHHHHHHHHhh---cccCCHHHHhhcCCCCcHHHHHHHHHHHH
Confidence            5567889999999999999999999987   66789999999999999999999999974

>PRK12488 acetate permease; Provisional

Probab=99.33  E-value=1.3e-12  Score=97.39  Aligned_cols=57  Identities=9%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007          9 LDNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus         9 ~~~~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      ++..+++.|+.++++|+++++++|+|.+   ||+++.+|||+|||++|||++++|+.||+
T Consensus        26 ~~~~~~~~~i~i~~~y~~~~l~ig~~~~---r~~~s~~df~laGR~l~~~~~~~si~at~   82 (549)
T PRK12488         26 QRQPLNWTAIGMFMVFVLFTLGITRWAA---RRTRSASDFYTAGGGLTGMQNGLAIAGDM   82 (549)
T ss_pred             hhccccHHHHHHHHHHHHHHHHHHhhee---eccCChHHHeeeCCCCcHHHHHHHHHHHH
Confidence            3456788999999999999999999987   56789999999999999999999999874

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=99.33  E-value=1.4e-12  Score=95.97  Aligned_cols=53  Identities=28%  Similarity=0.451  Sum_probs=48.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         13 FTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        13 ~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      .+..+++++++|+++++++|+|.+   ||+++.+|||+|||++|||++++|+.||+
T Consensus         3 ~~~~~~~~~~~y~~~~l~iG~~~~---r~~~s~~dy~lagr~l~~~~~~~s~~At~   55 (502)
T PRK15419          3 ISTPMLVTFCVYIFGMILIGFIAW---RSTKNFDDYILGGRSLGPFVTALSAGASD   55 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHh---hcCCChhHheeeCCCccHHHHHHHHHHHH
Confidence            567889999999999999999987   56788999999999999999999999974

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=99.30  E-value=3.7e-12  Score=93.12  Aligned_cols=55  Identities=22%  Similarity=0.363  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         14 TIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        14 ~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      ++.+++++++|+++++++|+|.+++.|+.++.+||++|||++|||++++|+.||+
T Consensus         2 ~~~~~~~i~~y~~~~~~ig~~~~r~~~~~~~~~dy~~agr~~~~~~~~~s~~at~   56 (483)
T PRK09442          2 NLEVILPLVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATY   56 (483)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhcccCCCcccceeeeCCCccHHHHHHHHHHHH
Confidence            6778999999999999999998855444445799999999999999999999874

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=99.24  E-value=8e-12  Score=91.65  Aligned_cols=50  Identities=34%  Similarity=0.500  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         16 PDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        16 ~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      ++++++++|+++++++|+|.+   ||+++.||||+|||++|||++++|+.||+
T Consensus         2 ~~~~~~~~y~~~~l~iG~~~~---r~~~s~~df~lagr~~~~~~~~~s~~At~   51 (487)
T TIGR02121         2 EILITFGVYLIIMLLIGFYAY---KKTTNLSDYVLGGRSLGPFVTALSAGASD   51 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---cccCchHHHeeeCCcccHHHHHHHHHHHH
Confidence            678899999999999999987   56778999999999999999999999873

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=99.20  E-value=2e-11  Score=91.08  Aligned_cols=56  Identities=14%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         10 DNHFTIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        10 ~~~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      +..+++..++++++|+++++.+|+|.+   ||+++.+|||+|||++|||++++|+.||+
T Consensus        27 ~~~~~~~~~~~~~~y~~~~l~ig~~~~---r~~~~~~dy~laGr~~~~~~~g~si~at~   82 (549)
T TIGR02711        27 RQPLNIQAIIMFLLFVGFTLYITYWAS---KKTRSRSDYYTAGGNITGFQNGLAIAGDY   82 (549)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHhh---cccCCchhheeeCCCccHHHHHHHHHHHH
Confidence            344577888889999999999999987   66788999999999999999999999874

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PRK10484 putative transporter; Provisional

Probab=99.18  E-value=2.2e-11  Score=90.10  Aligned_cols=52  Identities=17%  Similarity=0.251  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         16 PDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        16 ~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      +|++++++|++++.++|++.++| +++++.||||+|||++|||++++|+.||+
T Consensus         2 ~~i~~~~~~~~~~~~ig~~~~r~-~~~~s~~dyflagR~l~~~~~~~sl~AT~   53 (523)
T PRK10484          2 LTILSFLGFTLLVAVISWWKTRK-TDTSSSDGYFLAGRSLTGPVIAGSLLLTN   53 (523)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHcc-CCCCCchhheecCCCCchHHHHHHHHHHH
Confidence            68999999999999999997732 23478999999999999999999999974

>TIGR02119 panF sodium/pantothenate symporter

Probab=99.14  E-value=4.9e-11  Score=86.78  Aligned_cols=54  Identities=24%  Similarity=0.364  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhheeccCCcC-CccceeecCCCCCHHHHHhhhhhcC
Q psy15007         15 IPDYIVLLTMLVVSCAIGFFVGMCGEKQT-TSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        15 ~~D~~v~~~yl~~~~~iG~~~~~~~~~~~-s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      +.|++++++|+++++++|+|.++|.|+.+ +.|||++|||++|||++++|++||+
T Consensus         1 ~~~~~~~~~y~~~~~~ig~~~~r~~~~~~~~~~dy~~agr~l~~~~~~~s~~at~   55 (471)
T TIGR02119         1 WEVVIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATY   55 (471)
T ss_pred             CchHHHHHHHHHHHHHHHHHHheeccCCCCCccceeEeCCcccHHHHHHHHHHHH
Confidence            46899999999999999999985433222 3579999999999999999999984

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=99.06  E-value=4e-11  Score=89.33  Aligned_cols=46  Identities=13%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         18 YIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        18 ~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      |+++++|+++++++|+|.+     +++.+|||+|||++|||++++|++||+
T Consensus         2 ~~i~~~y~~~~l~iG~~~~-----~~s~~dy~laGr~l~~~~~~~s~~At~   47 (552)
T TIGR03648         2 YLFVGATFALYIGIGIWSR-----AGSTSEFYVAGRGVPPVANGMATAADW   47 (552)
T ss_pred             eEEehHHHHHHHHHHHhee-----cCchHHHeeeCCCCchHHHHHHHHHHH
Confidence            5688999999999999962     458999999999999999999999974

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=98.94  E-value=8.8e-10  Score=81.63  Aligned_cols=52  Identities=33%  Similarity=0.526  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         14 TIPDYIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        14 ~~~D~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      ...|++++.+|++.++.+|+|.+   ||+++.|||++|||++++|+.++|..||+
T Consensus         2 ~~~~~ii~~iyli~~~~ig~~a~---~~~~~~~dy~~~gR~lg~~v~~ls~~as~   53 (493)
T COG0591           2 MLILLIIFLIYLILMLLIGLYAY---RKTKSLEDYFLGGRSLGPFVYALSAAASD   53 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHh---cccCchHHHhccCCcCChHHHHHHHHHHH
Confidence            35789999999999999999998   66679999999999999999999999874

>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]

Probab=98.31  E-value=2.1e-07  Score=68.93  Aligned_cols=50  Identities=26%  Similarity=0.437  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         19 IVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        19 ~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      +.++.|++++.++++|..+|++|.+-..|||+|+|+|+..+++++..|||
T Consensus         5 ~pli~YL~~v~~i~iy~~~k~~k~~fLneYylgnRsmgg~VlAmt~~aTY   54 (473)
T COG4145           5 LPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATY   54 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhccccchHHHHhccCcccceehhhHHHHHH
Confidence            56889999999999998776666777899999999999999999999986

>COG4146 Predicted symporter [General function prediction only]

Probab=97.22  E-value=0.0004  Score=52.22  Aligned_cols=48  Identities=21%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHhheeccCC--cCCccceeecCCCCCHHHHHhhhhhc
Q psy15007         20 VLLTMLVVSCAIGFFVGMCGEK--QTTSDDFLLGSSSMGTLPMALSLAAS   67 (68)
Q Consensus        20 v~~~yl~~~~~iG~~~~~~~~~--~~s~~dyflggr~m~~~~vglSl~AT   67 (68)
                      .++.|+.....+.+...+|.|+  -+|++.||+|||+++..++|-|++-|
T Consensus         5 ~i~sFl~~t~~Va~isW~Ktr~~Dl~ss~GYFLaGR~Lsg~VI~~SlvLT   54 (571)
T COG4146           5 TILSFLGVTLLVAIISWWKTRGTDLSSSKGYFLAGRSLSGLVIACSLVLT   54 (571)
T ss_pred             HHHHHHHHHHHHHheeeeeccCCccccccceEeccCcccchhheehhhhh
Confidence            3444444444444333333233  45789999999999999999998754

>COG4147 DhlC Predicted symporter [General function prediction only]

Probab=96.31  E-value=0.0012  Score=50.21  Aligned_cols=48  Identities=8%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHhheeccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         18 YIVLLTMLVVSCAIGFFVGMCGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        18 ~~v~~~yl~~~~~iG~~~~~~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      ..++++|+...+.+++|.+   +|.++..||+.|||++|...=|+.+.+.|
T Consensus         9 i~i~~l~v~~~l~i~~~~~---~R~~s~tdyYvAG~~i~~fqNGlAiagdy   56 (529)
T COG4147           9 IGIFVLFVLITLYITYWAS---KRTRSATDYYVAGGRITGFQNGLAIAGDY   56 (529)
T ss_pred             EehhHHHHHHHHhheeeee---cccccccceeecCCcccccccceehhccc
Confidence            4567788888888998887   77899999999999999988777765543

>KOG3761|consensus

Probab=93.53  E-value=0.037  Score=41.54  Aligned_cols=50  Identities=12%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHhheeccCCcCC--------ccceeecCCCCCHHHHHhhhhhc
Q psy15007         18 YIVLLTMLVVSCAIGFFVGMCGEKQTT--------SDDFLLGSSSMGTLPMALSLAAS   67 (68)
Q Consensus        18 ~~v~~~yl~~~~~iG~~~~~~~~~~~s--------~~dyflggr~m~~~~vglSl~AT   67 (68)
                      .+.+++|.++++.+|+|..||.|..++        +|+-.+|||+++-.+=++.+-||
T Consensus         7 iiaii~fyllillvgiwa~~kskns~~~e~~agaate~iil~grdig~lvg~ftmtat   64 (591)
T KOG3761|consen    7 IIAIIFFYLLILLVGIWAARKSKNSGEAEEEAGAATEAIILAGRDIGLLVGGFTMTAT   64 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCccchhhhccccchhheeccccceeeeeeEEEEEE
Confidence            344455556667899999876543332        36789999999877766666554

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=87.80  E-value=0.36  Score=30.11  Aligned_cols=22  Identities=0%  Similarity=0.070  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHhheec
Q psy15007         17 DYIVLLTMLVVSCAIGFFVGMC   38 (68)
Q Consensus        17 D~~v~~~yl~~~~~iG~~~~~~   38 (68)
                      =++||++.++++++++.+.++|
T Consensus         4 l~~iii~~i~l~~~~~~~~~rR   25 (130)
T PF12273_consen    4 LFAIIIVAILLFLFLFYCHNRR   25 (130)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555544

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	1e-07

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 8  GLDNHFTIPDYIVLLTMLVVSCAIGFFVG-MCGEKQTTSDDFLLGSSSMGTLPMALSLAA 66
           +++  +  D +V    + +   +G +V       Q +++D+ L   S+    +  SL A
Sbjct: 3  NIEHGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIA 62

Query: 67 S 67
          +
Sbjct: 63 A 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	99.5
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	98.4
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	86.54
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	81.66

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=99.50  E-value=1.1e-14  Score=107.54  Aligned_cols=57  Identities=19%  Similarity=0.361  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhheeccCC-cCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         12 HFTIPDYIVLLTMLVVSCAIGFFVGMCGEK-QTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        12 ~~~~~D~~v~~~yl~~~~~iG~~~~~~~~~-~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      +++++|++++++|+++++++|+|.+|+.|+ ++++||||+|||++|||++++|++||+
T Consensus         7 ~~~~~d~~i~~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~   64 (593)
T 2xq2_A            7 GLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAAN   64 (593)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGG
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            489999999999999999999998865332 357999999999999999999999874

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=98.40  E-value=1.1e-08  Score=74.63  Aligned_cols=31  Identities=13%  Similarity=0.042  Sum_probs=27.4

Q ss_pred             ccCCcCCccceeecCCCCCHHHHHhhhhhcC
Q psy15007         38 CGEKQTTSDDFLLGSSSMGTLPMALSLAASQ   68 (68)
Q Consensus        38 ~~~~~~s~~dyflggr~m~~~~vglSl~AT~   68 (68)
                      |+||+++.||||+|||++|||++++|++||+
T Consensus         5 ~~~~~~~~~dy~laGR~l~~~~~~~s~~at~   35 (530)
T 3dh4_A            5 XXXXXXXXXXXXXAGKSLPWWAVGASLIAAN   35 (530)
T ss_dssp             HHHHHHHHHHHHCCCSCCCHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999974

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=86.54  E-value=1.3  Score=22.67  Aligned_cols=29  Identities=14%  Similarity=0.007  Sum_probs=13.2

Q ss_pred             HHHHHHHH-HHHHHHHHHHHhheeccCCcC
Q psy15007         15 IPDYIVLL-TMLVVSCAIGFFVGMCGEKQT   43 (68)
Q Consensus        15 ~~D~~v~~-~yl~~~~~iG~~~~~~~~~~~   43 (68)
                      .+--.|++ +.+++.++.++|+.+++|+++
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~   41 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGIGLFMRRRHIV   41 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence            34344443 444444455545444444443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=81.66  E-value=1.4  Score=22.59  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=12.0

Q ss_pred             CCHHHHHHHHHHHHHHH--HHHHhhee
Q psy15007         13 FTIPDYIVLLTMLVVSC--AIGFFVGM   37 (68)
Q Consensus        13 ~~~~D~~v~~~yl~~~~--~iG~~~~~   37 (68)
                      ...+--.++.+.+++++  ++++|.++
T Consensus        11 ~~~Ia~~vVGvll~vi~~l~~~~~~RR   37 (44)
T 2jwa_A           11 LTSIISAVVGILLVVVLGVVFGILIKR   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhheeh
Confidence            33344445544444444  45566553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00