Psyllid ID: psy15012

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080-----

MFVFGTAGFPPILSSFSLRFRDDKTLAVPSVKPLKKKTSTIEGRALEHQAPSRAGTRHRGLPYLFCTKYRRPCLKGEGVHIPPPSTPTPIPAGPPQYSGPAREDRARLIVFAVARIHRTRLLATLSGLKLEAEITNLHSSLTYRKKTRPPSLECSLTGHLGRTMIVLLEGVAPNQHFLLNVILLMHPENGTILGLELQFICCPSLSKSRNVPPNCKGPFTLSRTLEPLGVFKDNLCLWETLFGNVLSGTKYITVDHSDGQENNVNSVLFVDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFENNRYAVTFPWKNSDRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTKTLPTFINNRVKEIKSSTFPIIFRYIPTFCNPADIACRGSLKLENCELWWKGPPFLSLATEQWPEFPIDSEQEKFEDLAEDITLVSKHVPNTNENEIRKPVPINEEKFTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKGRFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLELKGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKQGKTTNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLEY

ccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEccccccEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHccccccEEEEEccccccEEEcccccccccccccccccccEEEEEEcccccccccEEEEEEccccccccEEcccccccccccccccccccccccccccccccccccEEEccccEEEEcccccEEEccccccccccccccccEEEEEEEcccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEcEEEEccccEEEEEEEcccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccEEcccccccccccccccEEEEEcccccccEEEEEEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEEEEccccccEEEEcccEEEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEEEccccccccccccccccEEccccccEEEEEEEEHHHHccccccccccccccccccccccccEEEEEEEccEEEcccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccEEEEEEccccccEEEEEEEEccccEEEccccEEEEccc

cEEEcccccccccccEEEEEccccccEcccccccccccccEccHHHHcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEHEEEEcccccccccccccccccEEEccccccHHHHHEHccccccHHHHHHHHHHHccccccEEEEEEEEEEcccccccccccccccccEEEccccccEEEccccccEEEEEcccEEcccccEEEcccccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHEEccccEEEEEcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHcccccHHHccccccEEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccEEEEEEEEcccHHHEEEEEEEEEEcccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHEEHHHEcccccccHHHHHHHHHHHHcccccccEEcccccccccHcccccHHHHccccccccHHHHcccHHccccccccccccccccccccccccEEEEEEcccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccEEEEccccccccccHcccccEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccEEEEEEEcccccccEEEEEEEEcccEEEEEccEEEEEccc

mfvfgtagfppilssfslrfrddktlavpsvkplkkktstiegralehqapsragtrhrglpylfctkyrrpclkgegvhipppstptpipagppqysgpareDRARLIVFAVARIHRTRLLATLSGLKLEAEITNLHSSLtyrkktrppslecsltghlGRTMIVLLEGVAPNQHFLLNVILLmhpengtilGLELQficcpslsksrnvppnckgpftlsrtleplgvfkdnLCLWETLFGnvlsgtkyitvdhsdgqennvnSVLFVDVHFRqdlseslprfwdlqtlgikdphdvsnddlalqqfdstvqfennryavtfpwknsdrivQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILEIVedekgdnklvhyFPYHavlresvdyeCEIQDFVETARKVFNEASLNLREWatncpndyyknMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWIcklgwedeiededktdFFRIINCmnsvgnipvgrYLHASlscdtnyelhafsdatkdsyAGCVYLKsvsgnetnvNLVFAksriapvkrptlprLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIhwikgtktlptFINNRvkeiksstfpiifryiptfcnpadiacrgslklencelwwkgppflslateqwpefpidseqEKFEDLAEDITLVSkhvpntneneirkpvpineekftSFHKLINVTCYVLKFINIKCkkinsyghitgeeykNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKgrfreiqfrkgesfpvllprkchitTIIINDIHRqcfhsgvsqtLSVLRVEywipqgrstVKTVLNNCVCLRKSLGNILLTRTQLHTLLVEIESVmnsrplgyvseedfmitpRHFLELKgdmlsqeetydpirgktATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKqgkttniepregevvliredkmpraswpygvivklnpsrdsrvRTAIVRTAHRteivrpismlypley

mfvfgtagfppilssfslrfrddktlavpsvkplkkktstiegralehqapsragtrhrglpYLFCTKYRRPCLKGEGVHIPPPSTPTPIPAGPPQYSGPAREDRARLIVFAVARIHRTRLLatlsglklEAEITNLHssltyrkktrppslecsltgHLGRTMIVLLEGVAPNQHFLLNVILLMHPENGTILGLELQFICCPSLSKSRNVPPNCKGPFTLSRTLEPLGVFKDNLCLWETLFGNVLSGTKYITVDHSDGQENNVNSVLFVDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFENNRYAvtfpwknsdRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILEIvedekgdnkLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVfaksriapvkrptlprLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTKTLPTFINNRVKEIKSSTFPIIFRYIPTFCNPADIACRGSLKLENCELWWKGPPFLSLATEQWPEFPIDSEQEKFEDLAEDITlvskhvpntneneirkpvpineEKFTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKGRFREIQfrkgesfpvllprKCHITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLELKGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMfkqgkttniepregevvliredkmpraswpygvivklnpsrdsrvrtaivrtahrteivrpismlypley

MFVFGTAGFPPILSSFSLRFRDDKTLAVPSVKPLKKKTSTIEGRALEHQAPSRAGTRHRGLPYLFCTKYRRPCLKGEGVHipppstptpipagppQYSGPAREDRARLIVFAVARIHRTRLLATLSGLKLEAEITNLHSSLTYRKKTRPPSLECSLTGHLGRTMIVLLEGVAPNQHFLLNVILLMHPENGTILGLELQFICCPSLSKSRNVPPNCKGPFTLSRTLEPLGVFKDNLCLWETLFGNVLSGTKYITVDHSDGQENNVNSVLFVDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFENNRYAVTFPWKNSDRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPitttlklliqktWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTKTLPTFINNRVKEIKSSTFPIIFRYIPTFCNPADIACRGSLKLENCELWWKGPPFLSLATEQWPEFPIDSEQEKFEDLAEDITLVSKHVPNTNENEIRKPVPINEEKFTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKGRFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLELKGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKQGKTTNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLEY

**VFGTAGFPPILSSFSLRFRD************************************RGLPYLFCTKYRRPCLKGEGV**************************ARLIVFAVARIHRTRLLATLSGLKLEAEITNLHSSLTYRKKTRPPSLECSLTGHLGRTMIVLLEGVAPNQHFLLNVILLMHPENGTILGLELQFICCPSLSKSRNVPPNCKGPFTLSRTLEPLGVFKDNLCLWETLFGNVLSGTKYITVDHSDGQENNVNSVLFVDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFENNRYAVTFPWKNSDRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTKTLPTFINNRVKEIKSSTFPIIFRYIPTFCNPADIACRGSLKLENCELWWKGPPFLSLATEQWPEFPID********LAEDITLVS**************VPINEEKFTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKGRFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLELKGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKQG****I***EGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLY****

*FVFGTAGFPPILSSFSLRFRDDKTLAVP*************************GTRHRGLPYLFCTKYRRPCLKG**************************EDRARLIVFAVARIHRTRLLATLSGLKLEAEITNLHSSLTYRKKTR***LECSLTGHLGRTMIVLLEGVAPNQHFLLNVILLMHPENGTILGLELQFICCPSLSKSRNVPPNCKGPFTLSRTLE****FKDNLCLWETLFGNVLSGTKY****************LFVDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFENNRYAVTFPWKNSDRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEASLNLREWATNCPND************QENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTKTLPTFINNRVKEIKSSTFPIIFRYIPTFCNPADIACRGSLKLENCELWWKGPPFLSLATEQWPEFPI*******EDLAEDITLVSKHVPNTNENEIRKPVPINEEKFTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKGRFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLELKGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRR*************PREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLEY

MFVFGTAGFPPILSSFSLRFRDDKTLAVPSVKPLKKK***IEG**L************RGLPYLFCTKYRRPCLKGEGVHIPPPSTPTPIPAGPPQYSGPAREDRARLIVFAVARIHRTRLLATLSGLKLEAEITNLHSSLTYRKKTRPPSLECSLTGHLGRTMIVLLEGVAPNQHFLLNVILLMHPENGTILGLELQFICCPSLSKSRNVPPNCKGPFTLSRTLEPLGVFKDNLCLWETLFGNVLSGTKYITVDHSDGQENNVNSVLFVDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFENNRYAVTFPWKNSDRIVQSNYGLALGQLKSVIKRHANDGILEACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFEYHYNNEKVCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGTKTLPTFINNRVKEIKSSTFPIIFRYIPTFCNPADIACRGSLKLENCELWWKGPPFLSLATEQWPEFPIDSEQEKFEDLAEDITLVSKHVPNTNENEIRKPVPINEEKFTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLKAGSRDLLALQMGLELNEVNILVSKGRFREIQFRKGESFPVLLPRKCHITTIIINDIHRQCFHSGVSQTLSVLRVEYWIPQGRSTVKTVLNNCVCLRKSLGNILLTRTQLHTLLVEIESVMNSRPLGYVSEEDFMITPRHFLELKGDMLSQEETYDPIRGKTATFRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKQGKTTNIEPREGEVVLIREDKMPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLEY

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1085	2.2.26 [Sep-21-2011]
Q2LD37		5005	Uncharacterized protein K	yes	N/A	0.061	0.013	0.394	1e-06
A2AAE1		5005	Uncharacterized protein K	yes	N/A	0.061	0.013	0.394	1e-06

>sp\|Q2LD37\|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2	Back alignment and function desciption

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 108  LIVFAVARIHRTRLLATLSGLKLEAEITNLHSSLTYRKKTR----PPSLECSLTGHLGRT 163
            LIVF +  ++RT L A + GL +E+E+  +H S T ++K +        E   T H+G  
Sbjct: 2775 LIVFGIGMVNRTHLEADIGGLTMESELKRIHGSFTLKEKMKDVLHQKMTETCATAHIGGV 2834

Query: 164  MIVLLEGVAPN 174
             IVLLEG+ PN
Sbjct: 2835 NIVLLEGITPN 2845

Homo sapiens (taxid: 9606)

>sp\|A2AAE1\|K1109_MOUSE Uncharacterized protein KIAA1109 OS=Mus musculus GN=Kiaa1109 PE=1 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1085
339257282		1564	Pao retrotransposon peptidase superfamil	0.590	0.409	0.289	7e-72
291231886		1091	PREDICTED: Pao retrotransposon peptidase	0.455	0.452	0.343	8e-68
291230224		1605	PREDICTED: Pao retrotransposon peptidase	0.465	0.314	0.318	2e-67
291222018		1559	PREDICTED: Pao retrotransposon peptidase	0.427	0.297	0.331	1e-65
170588613		1750	Pao retrotransposon peptidase family pro	0.430	0.266	0.328	5e-64
170586490		1836	Pao retrotransposon peptidase family pro	0.430	0.254	0.328	5e-64
170588121		1811	Pao retrotransposon peptidase family pro	0.430	0.257	0.330	5e-64
237845597		1683	Pao retrotransposon peptidase domain-con	0.430	0.277	0.328	6e-64
170589333		1566	Pao retrotransposon peptidase family pro	0.429	0.297	0.332	8e-64
170588831		1802	Pao retrotransposon peptidase family pro	0.440	0.265	0.318	1e-63

>gi\|339257282\|ref\|XP_003370011.1\| Pao retrotransposon peptidase superfamily [Trichinella spiralis] gi\|316965440\|gb\|EFV50150.1\| Pao retrotransposon peptidase superfamily [Trichinella spiralis]	Back alignment and taxonomy information

 Score =  279 bits (713), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 222/766 (28%), Positives = 345/766 (45%), Gaps = 125/766 (16%)

Query: 409  VETARKVFNEASLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLKFE 468
            ++  RK+      +L +W++N P      +    I   +  + LGM+WN   D+LS    
Sbjct: 829  IKELRKLMEIGGFDLTKWSSNIPT-IMNELPSEKIEEHKQVTTLGMSWNCKNDELSYNIS 887

Query: 469  YHYNNEK-VCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTD 527
               + +K   KR +LS  +  +D LG   P     K LIQ+ W   L WED + D+ KT 
Sbjct: 888  MEIDEKKEYTKREVLSTASRIYDPLGYLTPFIIRAKTLIQELWQRGLHWEDPLPDDLKTT 947

Query: 528  FFRIINCMNSVGNIPVGRYL-HASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNV 586
            + R I     + N+ + R L    +      ELH FSDA++ +Y G VY++ +      V
Sbjct: 948  WTRWITEWKKIENVRIPRCLIEIPMKNIIRLELHGFSDASEKAYGGAVYIRMIDIEGKGV 1007

Query: 587  -NLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWI 645
              L+ AKS++ P+K  TLPRLEL+ AL+  + + +V + +DL I     W D+Q  + WI
Sbjct: 1008 IKLIVAKSKVTPLKSVTLPRLELVAALVTAKLISHVKQVIDLNIDRVCCWSDSQITLCWI 1067

Query: 646  KG-TKTLPTFINNRVKEIKSSTFPIIFRYIPTFCNPADIACRGSL--KLENCELWWKGPP 702
            +   +T   F+ NRV+ I     P  +RY PT  NPAD+  RG+   KL++  LWW GP 
Sbjct: 1068 RNVARTWKPFVKNRVESIHELVKPEDWRYCPTKDNPADVITRGTTLRKLKDNHLWWNGPK 1127

Query: 703  FLSLATEQWPEFPIDSEQEKFEDLAEDITLVSKHVPNTNENEIRKPV----------PIN 752
            +L   + QWP       +E+ +        V+K + N  E E R  V          PI 
Sbjct: 1128 WLDDES-QWP-------KERLQ------RTVTKEIQNIIEEERRPTVIMLNVNVTIPPIF 1173

Query: 753  E-EKFTSFHKLINVTCYVLKFINIKCKKI---NSYGHITGEEYKNGKEMWIKYIQHVSFS 808
            E EKF +F K++ +T Y  +F++  CK +        +T EE    ++ W+K +Q   F 
Sbjct: 1174 EFEKFGNFEKMLRLTAYCNRFVS-NCKTLPERRKLRELTSEEMITAEKYWLKIVQRNEFH 1232

Query: 809  STIDQLKAGS---RDLLALQMGLELNEVNILVSKGRFREIQFRKGESFPVLLPRKCHITT 865
              I  L+ G    ++     +   L+E  +L   GR R         +P++LP+K H+  
Sbjct: 1233 DEIQILQKGRPLPKENRLKTLDPFLDEDGLLRVGGRLRLSDLDYEMKYPIILPKKHHVVN 1292

Query: 866  IIINDIHRQCFHSG---------------------------------------------- 879
            +II+  H    H+G                                              
Sbjct: 1293 LIIDRAHSNTLHAGNTQRFIQALNRFGARRGYPRIIQSDNFSTFKMADRLLKNLFSKPSL 1352

Query: 880  --VSQTLSVLRVEYWIPQGRS---------TVKTVLNNCVCLRKSLGNILLTRTQLHTLL 928
              V +T+   R+E+     R+          V++V N    L+K LG   L   +L T+L
Sbjct: 1353 DKVQRTMIRHRIEWKFITERAPWNGGYWERLVRSVKNT---LKKILGKTTLDEEELTTVL 1409

Query: 929  VEIESVMNSRPLGYVSEE---DFMITPRHFLELKG----DMLSQ---EETYDPIRGKTAT 978
             EIE+ +N+RPL +V ++      +TP HFL  +      M+S    EE   P+  K   
Sbjct: 1410 CEIEAKINARPLTFVGDDVKDADALTPFHFLIGRSFVDLPMMSTPTVEEDELPLNRK--- 1466

Query: 979  FRNVIQLWKKGTSYLDVFWRHWSRSYLDSLKDRRQVMFKQGKTTNIEPREGEVVLIREDK 1038
                   W+K    +  FW+ W   Y+ +   R + M K+      EP+EG++VL++ED 
Sbjct: 1467 -------WRKRQQIILHFWKRWRNEYVTTFVSRSKWMTKRQ-----EPKEGDIVLVKEDN 1514

Query: 1039 MPRASWPYGVIVKLNPSRDSRVRTAIVRTAHRTEIVRPISMLYPLE 1084
              R +W  G I  + P  D   RT  V+TA  T   RP + LY LE
Sbjct: 1515 TKRENWSIGRITSVLPGSDGLSRTVEVKTAKGT-FTRPAARLYLLE 1559

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi\|291231886\|ref\|XP_002735894.1\| PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|291230224\|ref\|XP_002735068.1\| PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|291222018\|ref\|XP_002731015.1\| PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|170588613\|ref\|XP_001899068.1\| Pao retrotransposon peptidase family protein [Brugia malayi] gi\|158593281\|gb\|EDP31876.1\| Pao retrotransposon peptidase family protein [Brugia malayi]	Back alignment and taxonomy information

>gi\|170586490\|ref\|XP_001898012.1\| Pao retrotransposon peptidase family protein [Brugia malayi] gi\|158594407\|gb\|EDP32991.1\| Pao retrotransposon peptidase family protein [Brugia malayi]	Back alignment and taxonomy information

>gi\|170588121\|ref\|XP_001898822.1\| Pao retrotransposon peptidase family protein [Brugia malayi] gi\|158593035\|gb\|EDP31630.1\| Pao retrotransposon peptidase family protein [Brugia malayi]	Back alignment and taxonomy information

>gi\|237845597\|ref\|XP_002372096.1\| Pao retrotransposon peptidase domain-containing protein [Toxoplasma gondii ME49] gi\|211969760\|gb\|EEB04956.1\| Pao retrotransposon peptidase domain-containing protein [Toxoplasma gondii ME49]	Back alignment and taxonomy information

>gi\|170589333\|ref\|XP_001899428.1\| Pao retrotransposon peptidase family protein [Brugia malayi] gi\|158593641\|gb\|EDP32236.1\| Pao retrotransposon peptidase family protein [Brugia malayi]	Back alignment and taxonomy information

>gi\|170588831\|ref\|XP_001899177.1\| Pao retrotransposon peptidase family protein [Brugia malayi] gi\|158593390\|gb\|EDP31985.1\| Pao retrotransposon peptidase family protein [Brugia malayi]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1085
pfam05380		159	pfam05380, Peptidase_A17, Pao retrotransposon pept	1e-36
cd01644		213	cd01644, RT_pepA17, RT_pepA17: Reverse transcripta	0.004

>gnl\|CDD\|147520 pfam05380, Peptidase_A17, Pao retrotransposon peptidase	Back alignment and domain information

 Score =  135 bits (341), Expect = 1e-36
 Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 2/158 (1%)

Query: 478 KRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNS 537
           KR +LS  AS FD LGL  P+T   K+ +Q+ W  KLGW++EI +E    +      +++
Sbjct: 3   KREVLSQVASIFDPLGLLAPVTVRAKIFLQEIWRQKLGWDEEIPEELSQRWLAFRKQLST 62

Query: 538 VGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAGCVYLKSVSGNETNVNLVFAKSRIAP 597
           +  I V RY+    S   N +LH F DA++ +YA  VY +   G E  V+LV AK+R+AP
Sbjct: 63  LQQIRVPRYV--PYSPARNIQLHGFCDASEKAYAAAVYWRVEEGEEIQVSLVAAKTRVAP 120

Query: 598 VKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLW 635
           +K  ++PRLEL  AL+  R  + V    D+K T+TY W
Sbjct: 121 LKTVSIPRLELCAALLLTRLARAVKPEHDVKPTDTYCW 158

Corresponds to Merops family A17. These proteins are homologous to aspartic proteinases encoded by retroposons and retroviruses. Length = 159

>gnl\|CDD\|238822 cd01644, RT_pepA17, RT_pepA17: Reverse transcriptase (RTs) in retrotransposons	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1085
PF05380		159	Peptidase_A17: Pao retrotransposon peptidase ; Int	100.0
cd01644		213	RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i	98.79
PF05585		164	DUF1758: Putative peptidase (DUF1758); InterPro: I	97.97
PF00075		132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	97.86
cd06222		130	RnaseH RNase H (RNase HI) is an endonuclease that	97.81
PF09337		39	zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR0	97.62
.; GO: 0004523 ribonuclease H activity" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00336">PF00336		245	DNA_pol_viral_C: DNA polymerase (viral) C-terminal	97.47
COG0328		154	RnhA Ribonuclease HI [DNA replication, recombinati	97.36
PRK07708		219	hypothetical protein; Validated	97.15
PRK13907		128	rnhA ribonuclease H; Provisional	96.92
PRK06548		161	ribonuclease H; Provisional	96.63
PRK00203		150	rnhA ribonuclease H; Reviewed	96.48
PF13456		87	RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH	96.44
PRK07238		372	bifunctional RNase H/acid phosphatase; Provisional	96.28
PRK08719		147	ribonuclease H; Reviewed	95.97
cd01644		213	RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i	89.26

>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family	Back alignment and domain information

Probab=100.00  E-value=8.7e-45  Score=371.73  Aligned_cols=158  Identities=41%  Similarity=0.678  Sum_probs=150.8

Q ss_pred             hhhhhHHHHHhhhccccCCccchhhHHHHHHHhhhhccCCCCccCChhhHHHHHHHHhhhcccceeeecceeecCCCCCC
Q psy15012        476 VCKRLLLSVYASFFDILGLWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDT  555 (1085)
Q Consensus       476 ~TKR~ilS~iasiyDPLGllaPv~l~~K~llq~Lw~~~~~WDd~lp~el~~~w~~~~~~l~~~~~~~iPR~~~~~~~~~~  555 (1085)
                      +|||+++|.+|++|||||+++|+++++|+|+|++|+.+++|||+||+++...|.+|.++++.+++++|||++...  ...
T Consensus         1 pTKR~ils~ia~~yDPlGl~~p~~i~~K~llq~lw~~~l~WD~~lp~el~~~w~~~~~~l~~~~~i~iPR~i~~~--~~~   78 (159)
T PF05380_consen    1 PTKRQILSFIASIYDPLGLLAPIIIRAKLLLQKLWQSKLDWDDPLPDELRKEWKKWLKELESLSPIRIPRCIPIS--DYR   78 (159)
T ss_pred             CChHHHHHHHHHHcCcchhhHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHhhcccccCCcccccc--ccc
Confidence            699999999999999999999999999999999999999999999999999999999999999889999987633  245


Q ss_pred             cceEeeecccccccceeEEEEEeeeCCCce-eeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccceEE
Q psy15012        556 NYELHAFSDATKDSYAGCVYLKSVSGNETN-VNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYL  634 (1085)
Q Consensus       556 ~~~L~~F~DAS~~ay~a~vYlr~~~~~~~~-~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~~~  634 (1085)
                      .++||+|||||+.|||||+|+|+ ..++.. ++|++||+||+|+|.+||||||||||++|++|+.++.+++++++++++|
T Consensus        79 ~~~L~~F~DAS~~aygavvYlr~-~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~~~~~l~~~~~~~~~  157 (159)
T PF05380_consen   79 SVELHVFCDASESAYGAVVYLRS-YSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANTVKKELDIEISQVVF  157 (159)
T ss_pred             ceeeeEeecccccceeeEeEeee-ccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEE
Confidence            78999999999999999999999 667777 9999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q psy15012        635 WI  636 (1085)
Q Consensus       635 ~t  636 (1085)
                      ||
T Consensus       158 wt  159 (159)
T PF05380_consen  158 WT  159 (159)
T ss_pred             eC
Confidence            97

>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons	Back alignment and domain information

>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []	Back alignment and domain information

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site	Back alignment and domain information

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner	Back alignment and domain information

>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein	Back alignment and domain information

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07708 hypothetical protein; Validated	Back alignment and domain information

>PRK13907 rnhA ribonuclease H; Provisional	Back alignment and domain information

>PRK06548 ribonuclease H; Provisional	Back alignment and domain information

>PRK00203 rnhA ribonuclease H; Reviewed	Back alignment and domain information

>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B	Back alignment and domain information

>PRK07238 bifunctional RNase H/acid phosphatase; Provisional	Back alignment and domain information

>PRK08719 ribonuclease H; Reviewed	Back alignment and domain information

>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1085
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.2 bits (124), Expect = 1e-06
 Identities = 102/691 (14%), Positives = 197/691 (28%), Gaps = 230/691 (33%)

Query: 270 VDVHFRQDLSESLPRFWDLQTLGIKDPHDVSNDDLALQQFDSTVQFEN--NRYAVTFPW- 326
               ++  LS     F  +     KD  D+    L+ ++ D  +  ++  +     F W 
Sbjct: 14  HQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WT 70

Query: 327 --KNSDRIVQ--------SNYGLALGQLKSVIK--------------RHANDGILEACKQ 362
                + +VQ         NY   +  +K+  +              R  ND       Q
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN------Q 124

Query: 363 TFDD----------QLAKGILE-------IVEDEKGDNK--LVHYFPYHAVLRESVDYEC 403
            F            +L + +LE       +++   G  K  +        V      Y+ 
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-----DVCL---SYKV 176

Query: 404 EIQ-DFVETARKVFNEASLNLREWAT----NCP-------NDYYKNMDKTLINTQENQSV 451
           + + DF     K+F         W      N P             +D    +  ++ S 
Sbjct: 177 QCKMDF-----KIF---------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 452 LGMNWNVHKDDLSLKFEYH-YNN----------EKV-------CKRLLLSVYASFFDILG 493
           + +  +  + +L    +   Y N           K        CK LL + +    D L 
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 494 LWCPITTTLKLLIQKTWICKLGWEDEIEDEDKTDFFRIINCMNSVGNIP----------- 542
                TTT   L   +            DE K+   + ++C     ++P           
Sbjct: 283 ---AATTTHISLDHHSM----TLT---PDEVKSLLLKYLDC--RPQDLPREVLTTNPRRL 330

Query: 543 --VGRYLHASLSCDTNYELHAFSDATKDSYAGCV-YLKSVSGNETNVNL-VFAKSRIAPV 598
             +   +   L+   N++ H   D         +  L+     +    L VF  S  A +
Sbjct: 331 SIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--AHI 387

Query: 599 KRPTLPRL----------ELLGALIAYRSLK--------YVHE-SLDLKITNTYLWIDNQ 639
               L  +           ++  L  Y  ++         +    L+LK+      ++N+
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-----LENE 442

Query: 640 CVIHWIKGTKTLPTFIN--NRVKEIKSSTF--PIIFRYIPTFCNPADIACRGSLKLENCE 695
             +H     +++   ++  N  K   S     P + +Y  +      I       L+N E
Sbjct: 443 YALH-----RSI---VDHYNIPKTFDSDDLIPPYLDQYFYSH-----IG----HHLKNIE 485

Query: 696 LWWKGPPFLSLATEQWPEFPIDSEQEKFEDLAEDITLVSKHVPNTNENEIRKPVPINEEK 755
                        E+   F        F D                E +IR         
Sbjct: 486 H-----------PERMTLFR-----MVFLDF------------RFLEQKIRHDSTAWNAS 517

Query: 756 FTSFHKLINVTCYVLKFINIKCKKINSYGHITGEEYKNGKEMWIKYIQHVSFSSTIDQLK 815
            +  + L  +  Y   +I   C     Y            E  +  I         + + 
Sbjct: 518 GSILNTLQQLKFY-KPYI---CDNDPKY------------ERLVNAILDFLPKIEENLIC 561

Query: 816 AGSRDLLALQMGLELNEVNILVSKGRFREIQ 846
           +   DL  L++ L + E   +  +   +++Q
Sbjct: 562 SKYTDL--LRIAL-MAEDEAIFEEA-HKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1085
1rw3_A		455	POL polyprotein; RNA and DNA dependent DNA polymer	98.91
3hst_B		141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	98.1
3u3g_D		140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	97.89
2ehg_A		149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	97.88
3oym_A		395	PFV integrase, P42IN; protein-DNA complex; HET: DN	97.88
2kq2_A		147	Ribonuclease H-related protein; PSI, NESG, protein	97.47
1mu2_A		555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	97.38
2qkb_A		154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	97.05
4htu_A		134	Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine,	96.93
3qio_A		150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	96.93
3p1g_A		165	Xenotropic murine leukemia virus-related virus (X	96.91
2e4l_A		158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	96.68
3h08_A		146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	96.62
1jl1_A		155	Ribonuclease HI; RNAse HI, protein stability, ther	96.42
2lsn_A		165	Reverse transcriptase; RNAse H, viral protein; NMR	96.4
2zd1_A		557	Reverse transcriptase/ribonuclease H; P51/P66, het	96.13
1zbf_A		142	Ribonuclease H-related protein; RNAse H, RNA/DNA h	95.98
1ril_A		166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	95.91
2zd1_B		428	P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleosid	95.84
2zd1_A		557	Reverse transcriptase/ribonuclease H; P51/P66, het	95.35
3nnq_A		114	Integrase P46, N-terminal domain of moloney murine	93.72

>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2	Back alignment and structure

Probab=98.91  E-value=2.4e-10  Score=135.08  Aligned_cols=255  Identities=10%  Similarity=-0.008  Sum_probs=160.9

Q ss_pred             hhhhHHHhhhccchhHH--HHHhHHHHHHHcCcccccccccCCCCeeEEeCCceeeccCCcccchhHHHHHHHHHHHHhc
Q psy15012        342 GQLKSVIKRHANDGILE--ACKQTFDDQLAKGILEIVEDEKGDNKLVHYFPYHAVLRESVDYECEIQDFVETARKVFNEA  419 (1085)
Q Consensus       342 kRl~~L~~rL~~~p~l~--~Y~~~i~eyl~~G~iE~v~~~~~~~~~~~YLPHh~V~k~~~~tKlRlqdl~~~~~~ll~~~  419 (1085)
                      .++..+.++|.+.|...  ..+.++.++... +.        ......|++...|...+...-   .+...++.+.|.+.
T Consensus       164 y~~~~mpfGl~naP~~fq~~m~~~l~~~~~~-~~--------~~~v~~YvDDili~s~~~~e~---~~~l~~v~~~l~~~  231 (455)
T 1rw3_A          164 LTWTRLPQGFKNSPTLFDEALHRDLADFRIQ-HP--------DLILLQYVDDLLLAATSELDC---QQGTRALLQTLGNL  231 (455)
T ss_dssp             EEESBCCSSCTTHHHHHHHHHHHHHHHHHHT-CT--------TCEEEEETTEEEEEESSHHHH---HHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCcHHHHHHHHHHHHHHhhhh-CC--------CceEEEEcCCEEEecCCHHHH---HHHHHHHHHHHHHc
Confidence            55666777888888776  344445444432 11        112457998876666543211   13567888889999


Q ss_pred             CccccccccCCccccccccccccccccccccccceeeccccCeeEEe-ccc-ccCccchhhhhHHHHHhhhccccCCccc
Q psy15012        420 SLNLREWATNCPNDYYKNMDKTLINTQENQSVLGMNWNVHKDDLSLK-FEY-HYNNEKVCKRLLLSVYASFFDILGLWCP  497 (1085)
Q Consensus       420 gfnLrk~~SN~~~~~~~~i~~~d~~~~~~~K~LGl~W~~~~D~l~fk-~~~-~~~~~~~TKR~ilS~iasiyDPLGllaP  497 (1085)
                      ||.+..      +-.        .-.....+.||+.++.......-. +.. .....+.|++++.|+++.    +|+...
T Consensus       232 gl~l~~------~K~--------~f~~~~~~fLG~~i~~~gi~~~~~kv~~i~~~~~p~t~k~l~~flG~----~~y~r~  293 (455)
T 1rw3_A          232 GYRASA------KKA--------QICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT----AGFCRL  293 (455)
T ss_dssp             TCCBCG------GGC--------CCSBSSCEETTEEESSSEECCCTTCCCCCCCCCTTTHHHHHHHTTTT----TCCCSS
T ss_pred             CCccCc------cch--------hhhccceeEeeeeccCCeeEEChhHhhhhccCCCCCCHHHhhhhccc----chHHHH
Confidence            998731      100        011235588999988553221110 100 012346789999998865    455555


Q ss_pred             hhhHHHHHHHhhhh-----ccCCCCccCChhhHHHHHHHHhhhcccceeeecceeecCCCCCCcceEeeeccccccccee
Q psy15012        498 ITTTLKLLIQKTWI-----CKLGWEDEIEDEDKTDFFRIINCMNSVGNIPVGRYLHASLSCDTNYELHAFSDATKDSYAG  572 (1085)
Q Consensus       498 v~l~~K~llq~Lw~-----~~~~WDd~lp~el~~~w~~~~~~l~~~~~~~iPR~~~~~~~~~~~~~L~~F~DAS~~ay~a  572 (1085)
                      ++-....+++.|+.     .+..|++.    ..+.|..+++.+....-+..|..         ...+++|||||..|+||
T Consensus       294 fi~~~~~~~~pL~~llkk~~~~~W~~~----~~~af~~lK~~l~~~pvL~~p~~---------~~~~~l~~DAS~~~~ga  360 (455)
T 1rw3_A          294 WIPGFAEMAAPLYPLTKTGTLFNWGPD----QQKAYQEIKQALLTAPALGLPDL---------TKPFELFVDEKQGYAKG  360 (455)
T ss_dssp             CCCCCGGGCCTTCC--------CCCCC----CSSSCCHHHHHTCSSCCSCCSSS---------CCTTSCEEEEEECSSSB
T ss_pred             HHhhhhhhcccHHHHhcCCCCcCchHH----HHHHHHHHHHHhhcCcccccCCC---------CCcEEEEEeccCCccee
Confidence            54444444444443     24678865    45567778888877654444432         34688999999999999


Q ss_pred             EEEEEeeeCCCce-eeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccceEEEechhhhhHhhhCC
Q psy15012        573 CVYLKSVSGNETN-VNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLWIDNQCVIHWIKGT  648 (1085)
Q Consensus       573 ~vYlr~~~~~~~~-~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~~~~tDS~ivL~wi~~~  648 (1085)
                      |++-.   .+|.. ....+||....+-++++++.+||+|++.|++........     ..++++||+. +++|+++.
T Consensus       361 vL~q~---~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g-----~~~~v~tDh~-~~~~l~~~  428 (455)
T 1rw3_A          361 VLTQK---LGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG-----QPLVIKAPHA-VEALVKQP  428 (455)
T ss_dssp             EECCB---CTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCS-----SCEEEECSSC-TTTTSSST
T ss_pred             EEEEe---cCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCC-----CcEEEEecCh-HHHHhCCC
Confidence            87643   24433 445556665566678999999999999999887765443     5789999998 99999987

PyMOL of 1rw3

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}	Back alignment and structure

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}	Back alignment and structure

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A	Back alignment and structure

>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...	Back alignment and structure

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A	Back alignment and structure

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B	Back alignment and structure

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*	Back alignment and structure

>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A	Back alignment and structure

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A	Back alignment and structure

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A	Back alignment and structure

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A	Back alignment and structure

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}	Back alignment and structure

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...	Back alignment and structure

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}	Back alignment and structure

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...	Back alignment and structure

>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*	Back alignment and structure

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A	Back alignment and structure

>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...	Back alignment and structure

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...	Back alignment and structure

>3nnq_A Integrase P46, N-terminal domain of moloney murine leukemia VIRU integrase; retroviral integrase, Zn finger; 2.69A {Moloney murine leukemia virus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1085
d1mu2a1		126	HIV RNase H (Domain of reverse transcriptase) {Hum	97.23
d1s1ta1		110	HIV RNase H (Domain of reverse transcriptase) {Hum	97.12
d1rila_		147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	95.79
d1jl1a_		152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	95.62
d1zbfa1		132	BH0863-like Ribonuclease H {Bacillus halodurans [T	95.4
d2zd1b1		424	HIV-1 reverse transcriptase {Human immunodeficienc	82.74

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=97.23  E-value=0.00028  Score=65.97  Aligned_cols=98  Identities=13%  Similarity=0.213  Sum_probs=63.5

Q ss_pred             Eeeecccccc---cceeEEEEEeeeCCCceeeEeeecccccCCCCCccchhhHHHHHHHHHhHHHHHHhccccccceEEE
Q psy15012        559 LHAFSDATKD---SYAGCVYLKSVSGNETNVNLVFAKSRIAPVKRPTLPRLELLGALIAYRSLKYVHESLDLKITNTYLW  635 (1085)
Q Consensus       559 L~~F~DAS~~---ay~a~vYlr~~~~~~~~~~ll~aKsrv~Plk~~TIPRlEL~a~~l~~~l~~~v~~~l~~~i~~~~~~  635 (1085)
                      ..+|+|+|..   +-|++.|.-   .+|...        ..++...|-.+.||.|+..+.+.          ....+.++
T Consensus         8 ~t~YTDGS~~~n~~~~~~g~~~---~~~~~~--------~~~~~~~tnn~AEl~Ai~~al~~----------~~~~i~I~   66 (126)
T d1mu2a1           8 ETFYTDGSCNRQSKEGKAGYVT---DRGKDK--------VKKLEQTTNQQAELEAFAMALTD----------SGPKVNII   66 (126)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEE---TTSCEE--------EEEESSCCHHHHHHHHHHHHHHT----------SCSEEEEE
T ss_pred             cEEEEcCCCCCCCCcEEEEEEe---cCCCEE--------EEecCCCcchHHHHHHHHHHhcc----------CCcceEEE
Confidence            5799999842   223333332   233221        12233568899999999887642          34689999


Q ss_pred             echhhhhHhhhCC-CCC-chHHHHHHHHHhhcCCcceeeecCCCC
Q psy15012        636 IDNQCVIHWIKGT-KTL-PTFINNRVKEIKSSTFPIIFRYIPTFC  678 (1085)
Q Consensus       636 tDS~ivL~wi~~~-~~~-~~fv~nRv~~I~~~~~~~~~rhV~t~~  678 (1085)
                      |||+-|+.|+.+. +.+ ......++.+..+. ..+.|.|||+-.
T Consensus        67 tDS~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~wV~gH~  110 (126)
T d1mu2a1          67 VDSQYVMGIVASQPTESESKIVNQIIEEMIKK-EAIYVAWVPAHK  110 (126)
T ss_dssp             ESCHHHHHHHHTCCSEESCHHHHHHHHHHHHC-SEEEEEECCSSS
T ss_pred             echHHHHHHHhcCCccccchHHHHHHHHhhhc-ceeEEEEEeCCC
Confidence            9999999999998 333 33344444444443 378999999865

PyMOL of d1mu2a1

>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}	Back information, alignment and structure

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}	Back information, alignment and structure