Psyllid ID: psy15027

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MSDVTKWKTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLLKTL
cccccccccccccccccccccccHHHHHHHHHHcccccHHHcccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHc
cccccEEEEEcccccccHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccHHHHHHHHcccEEcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHcEcccccccccEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHcHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccc
msdvtkwktirptgggggesgdggesgdggksegksgggsesgdenggggtthpidryrttellhfdspsgnsldsisdRDFIIEFLSHCSITIMHLSRISEEFIIFmnpqfdyvslpdslltgssimpqkknpdiLELIRGKTGRVYGNLFNMLTimksqplaynkdmqecKQPLVDSIETLNMCLTAFKLILDNVKfntgrmyvsagegfSIATDIADYLakkkipfrscHEIVGKIIKFCVQeakpldqlSLEELKAIHEDIGEDIFEILSVEKsvehkdhvgatapsqvqHSVDVFENFVKDMTDLLKTL
msdvtkwktirptgggggesgdggesGDGGKSEgksgggsesgdenggggtTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGssimpqkknpdiLELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGatapsqvqhsvDVFENFVKDMTDLLKTL
MSDVTKWKTIRPTgggggesgdggesgdggksegksgggsesgdenggggTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLLKTL
****************************************************************************ISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIM****NPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSV***************HSVDVFENFVK*********
****TKW*TIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLLKTL
MSDVTKWKTIRP*************************************GTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLLKTL
*SDVTKWKTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDL***L
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSDVTKWKTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLLKTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
A1AX52480 Argininosuccinate lyase O yes N/A 0.818 0.535 0.536 6e-79
Q1QSV4467 Argininosuccinate lyase O yes N/A 0.780 0.524 0.530 8e-78
Q21EF4469 Argininosuccinate lyase O yes N/A 0.796 0.533 0.528 5e-77
Q2SQ67468 Argininosuccinate lyase O yes N/A 0.834 0.559 0.519 5e-77
Q3K4S8464 Argininosuccinate lyase 2 yes N/A 0.792 0.536 0.542 5e-77
C1DJ48464 Argininosuccinate lyase O yes N/A 0.792 0.536 0.530 7e-76
C3K426464 Argininosuccinate lyase O yes N/A 0.792 0.536 0.534 9e-76
Q4K3X1464 Argininosuccinate lyase O yes N/A 0.792 0.536 0.526 1e-75
A4VGX6464 Argininosuccinate lyase O yes N/A 0.792 0.536 0.534 2e-75
Q88B94464 Argininosuccinate lyase O yes N/A 0.792 0.536 0.538 3e-75
>sp|A1AX52|ARLY_RUTMC Argininosuccinate lyase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=argH PE=3 SV=1 Back     alignment and function desciption
 Score =  294 bits (753), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 138/257 (53%), Positives = 187/257 (72%)

Query: 49  GGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFM 108
            GTT+ I R RT ELL F+    NSLD +SDRDF+IEFLS  SI +MHLSR SEE I++ 
Sbjct: 224 AGTTYSIKRTRTAELLGFERICLNSLDGVSDRDFVIEFLSTASIIMMHLSRFSEELILWS 283

Query: 109 NPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKD 168
           + QF+++ LPDS  TGSSIMPQKKNPD+ EL+RGKTGRVYGNL ++LTIMKSQPLAYNKD
Sbjct: 284 SAQFNFIELPDSFCTGSSIMPQKKNPDVPELVRGKTGRVYGNLTSLLTIMKSQPLAYNKD 343

Query: 169 MQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIP 228
            QE K+PL D+++TL  CL  F  ++  ++     MY S  +G++ ATD+ADYL  K +P
Sbjct: 344 NQEDKEPLFDTVDTLKACLRVFADMIPTIQIKRDNMYNSTKQGYTTATDLADYLVNKGLP 403

Query: 229 FRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGAT 288
           FR  H++VGK + + ++  K L +LSLEEL+A    I  D+FEILS+E S+  ++H+GAT
Sbjct: 404 FRDAHKVVGKSVAYGIEHQKDLSELSLEELQAFDSRIENDVFEILSLEGSLNARNHLGAT 463

Query: 289 APSQVQHSVDVFENFVK 305
           +P+QV+ ++ +    +K
Sbjct: 464 SPNQVKQAIKIARKTLK 480

Ruthia magnifica subsp. Calyptogena magnifica (taxid: 413404)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 1
>sp|Q1QSV4|ARLY_CHRSD Argininosuccinate lyase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q21EF4|ARLY_SACD2 Argininosuccinate lyase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q2SQ67|ARLY_HAHCH Argininosuccinate lyase OS=Hahella chejuensis (strain KCTC 2396) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q3K4S8|ARLY2_PSEPF Argininosuccinate lyase 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=argH2 PE=3 SV=1 Back     alignment and function description
>sp|C1DJ48|ARLY_AZOVD Argininosuccinate lyase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|C3K426|ARLY_PSEFS Argininosuccinate lyase OS=Pseudomonas fluorescens (strain SBW25) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q4K3X1|ARLY_PSEF5 Argininosuccinate lyase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|A4VGX6|ARLY_PSEU5 Argininosuccinate lyase OS=Pseudomonas stutzeri (strain A1501) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q88B94|ARLY_PSESM Argininosuccinate lyase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=argH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
387812847 469 argininosuccinate lyase [Marinobacter hy 0.792 0.530 0.554 8e-79
88797658 464 Argininosuccinate lyase [Reinekea blande 0.828 0.560 0.538 2e-78
269468206 464 argininosuccinate lyase [uncultured SUP0 0.792 0.536 0.554 6e-78
358449858 469 argininosuccinate lyase [Marinobacter ma 0.808 0.541 0.539 1e-77
385329984 469 argininosuccinate lyase [Marinobacter ad 0.808 0.541 0.539 2e-77
120553427 469 argininosuccinate lyase [Marinobacter aq 0.777 0.520 0.557 2e-77
359394679 467 Argininosuccinate lyase [Halomonas boliv 0.792 0.533 0.538 2e-77
307546846 472 argininosuccinate lyase [Halomonas elong 0.780 0.519 0.546 3e-77
118602765 480 argininosuccinate lyase [Candidatus Ruth 0.818 0.535 0.536 3e-77
448745949 467 Argininosuccinate lyase [Halomonas titan 0.780 0.524 0.546 9e-77
>gi|387812847|ref|YP_005428324.1| argininosuccinate lyase [Marinobacter hydrocarbonoclasticus ATCC 49840] gi|381337854|emb|CCG93901.1| argininosuccinate lyase [Marinobacter hydrocarbonoclasticus ATCC 49840] Back     alignment and taxonomy information
 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 138/249 (55%), Positives = 186/249 (74%)

Query: 49  GGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFM 108
            GTT+PIDR  T ELL FD P+ NSLDS+SDRDF IEF S  ++ + HLSR SEE +++ 
Sbjct: 213 AGTTYPIDRNLTAELLGFDRPTENSLDSVSDRDFAIEFCSFAALLMTHLSRFSEELVLWT 272

Query: 109 NPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKD 168
           + QFD++ LPD   TGSSIMPQKKNPD+ EL+RGKTGRV G+L ++LT+MKSQPLAYNKD
Sbjct: 273 SAQFDFIDLPDRFCTGSSIMPQKKNPDVPELVRGKTGRVNGHLISLLTLMKSQPLAYNKD 332

Query: 169 MQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIP 228
            QE K+PL D+++T+  CL A+  ++  ++     M V+A  GFS ATD+ADYL KK +P
Sbjct: 333 NQEDKEPLFDTVDTIKGCLKAYADMIPAIRAKADNMRVAAKRGFSTATDLADYLVKKGVP 392

Query: 229 FRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGAT 288
           FR  HEIVGK + F V E + L  ++LEEL+   + IGED+F++L++E SV+ +DH+G T
Sbjct: 393 FRDAHEIVGKSVAFGVAEGRDLSDMTLEELQQFSDVIGEDVFDVLTLEGSVQARDHLGGT 452

Query: 289 APSQVQHSV 297
           AP+QV+ +V
Sbjct: 453 APNQVRAAV 461

Source: Marinobacter hydrocarbonoclasticus ATCC 49840

Species: Marinobacter hydrocarbonoclasticus

Genus: Marinobacter

Family: Alteromonadaceae

Order: Alteromonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|88797658|ref|ZP_01113247.1| Argininosuccinate lyase [Reinekea blandensis MED297] gi|88779830|gb|EAR11016.1| Argininosuccinate lyase [Reinekea sp. MED297] Back     alignment and taxonomy information
>gi|269468206|gb|EEZ79899.1| argininosuccinate lyase [uncultured SUP05 cluster bacterium] Back     alignment and taxonomy information
>gi|358449858|ref|ZP_09160335.1| argininosuccinate lyase [Marinobacter manganoxydans MnI7-9] gi|357225907|gb|EHJ04395.1| argininosuccinate lyase [Marinobacter manganoxydans MnI7-9] Back     alignment and taxonomy information
>gi|385329984|ref|YP_005883935.1| argininosuccinate lyase [Marinobacter adhaerens HP15] gi|311693134|gb|ADP96007.1| argininosuccinate lyase [Marinobacter adhaerens HP15] Back     alignment and taxonomy information
>gi|120553427|ref|YP_957778.1| argininosuccinate lyase [Marinobacter aquaeolei VT8] gi|120323276|gb|ABM17591.1| argininosuccinate lyase [Marinobacter aquaeolei VT8] Back     alignment and taxonomy information
>gi|359394679|ref|ZP_09187732.1| Argininosuccinate lyase [Halomonas boliviensis LC1] gi|357971926|gb|EHJ94371.1| Argininosuccinate lyase [Halomonas boliviensis LC1] Back     alignment and taxonomy information
>gi|307546846|ref|YP_003899325.1| argininosuccinate lyase [Halomonas elongata DSM 2581] gi|307218870|emb|CBV44140.1| argininosuccinate lyase [Halomonas elongata DSM 2581] Back     alignment and taxonomy information
>gi|118602765|ref|YP_903980.1| argininosuccinate lyase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|171704461|sp|A1AX52.1|ARLY_RUTMC RecName: Full=Argininosuccinate lyase; Short=ASAL; AltName: Full=Arginosuccinase gi|118567704|gb|ABL02509.1| argininosuccinate lyase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Back     alignment and taxonomy information
>gi|448745949|ref|ZP_21727619.1| Argininosuccinate lyase [Halomonas titanicae BH1] gi|445566677|gb|ELY22783.1| Argininosuccinate lyase [Halomonas titanicae BH1] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TIGR_CMR|GSU_0156458 GSU_0156 "argininosuccinate ly 0.789 0.541 0.508 5.2e-65
TIGR_CMR|ECH_0937470 ECH_0937 "argininosuccinate ly 0.828 0.553 0.463 9e-61
TIGR_CMR|CHY_2259456 CHY_2259 "argininosuccinate ly 0.773 0.532 0.502 3.5e-59
TIGR_CMR|BA_4879462 BA_4879 "argininosuccinate lya 0.815 0.554 0.464 5.7e-59
TIGR_CMR|SPO_0332463 SPO_0332 "argininosuccinate ly 0.786 0.533 0.451 1.3e-54
TIGR_CMR|CPS_0464 645 CPS_0464 "argininosuccinate ly 0.786 0.382 0.433 2.1e-54
TIGR_CMR|DET_1261461 DET_1261 "argininosuccinate ly 0.777 0.529 0.440 1.1e-53
TIGR_CMR|SO_0279455 SO_0279 "argininosuccinate lya 0.786 0.542 0.437 1.1e-53
TAIR|locus:2183825517 AT5G10920 [Arabidopsis thalian 0.792 0.481 0.449 6.3e-53
UNIPROTKB|Q9KNT9458 argH "Argininosuccinate lyase" 0.812 0.556 0.431 2.7e-52
TIGR_CMR|GSU_0156 GSU_0156 "argininosuccinate lyase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 126/248 (50%), Positives = 172/248 (69%)

Query:    51 TTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP 110
             TT PIDR    ELL F   + NSLDS+SDRDF +EF+   SI +MHLSR SEE I++   
Sbjct:   205 TTFPIDREHVAELLDFPGVTRNSLDSVSDRDFALEFMGASSILMMHLSRFSEELILWSTS 264

Query:   111 QFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQ 170
             +F +V L DS  TGSSIMPQKKNPD+ EL+RGKTGRVYGNL  +LT+MK+ PLAYNKDMQ
Sbjct:   265 EFKFVELTDSFCTGSSIMPQKKNPDVPELVRGKTGRVYGNLMALLTVMKALPLAYNKDMQ 324

Query:   171 ECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFR 230
             E K+PL D+I+T+   L  F  ++  ++ N G M  +A +GFS ATD+ADYL ++ +PFR
Sbjct:   325 EDKEPLFDTIDTVKGSLKIFADMVREMRINAGNMRAAAAKGFSTATDVADYLVRQGMPFR 384

Query:   231 SCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAP 290
               HE+VGK + +C+   K L  L+++E +   + IGEDIF+ +++E SV  +   G TA 
Sbjct:   385 DAHEVVGKTVAYCIANGKDLPDLTMDEWQGFSDKIGEDIFDAITLEASVNARVATGGTAL 444

Query:   291 SQVQHSVD 298
              +V+  ++
Sbjct:   445 ERVKAEIE 452
GO:0004056 "argininosuccinate lyase activity" evidence=ISS
GO:0006526 "arginine biosynthetic process" evidence=ISS
TIGR_CMR|ECH_0937 ECH_0937 "argininosuccinate lyase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2259 CHY_2259 "argininosuccinate lyase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4879 BA_4879 "argininosuccinate lyase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0332 SPO_0332 "argininosuccinate lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0464 CPS_0464 "argininosuccinate lyase/amino-acid N-acetyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1261 DET_1261 "argininosuccinate lyase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0279 SO_0279 "argininosuccinate lyase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TAIR|locus:2183825 AT5G10920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNT9 argH "Argininosuccinate lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5ED16ARLY_GEOBB4, ., 3, ., 2, ., 10.52610.79290.5436yesN/A
Q6FFB2ARLY_ACIAD4, ., 3, ., 2, ., 10.5360.79290.5220yesN/A
B7V5F3ARLY_PSEA84, ., 3, ., 2, ., 10.52610.79290.5366yesN/A
B0KH03ARLY_PSEPG4, ., 3, ., 2, ., 10.52200.79290.5366yesN/A
B1J1V0ARLY_PSEPW4, ., 3, ., 2, ., 10.52610.79290.5366yesN/A
Q88B94ARLY_PSESM4, ., 3, ., 2, ., 10.53810.79290.5366yesN/A
Q1QEM4ARLY_PSYCK4, ., 3, ., 2, ., 10.51400.79290.5448yesN/A
C3K426ARLY_PSEFS4, ., 3, ., 2, ., 10.53410.79290.5366yesN/A
B8GSV2ARLY_THISH4, ., 3, ., 2, ., 10.50200.78020.5246yesN/A
Q4K3X1ARLY_PSEF54, ., 3, ., 2, ., 10.52610.79290.5366yesN/A
Q02EA0ARLY_PSEAB4, ., 3, ., 2, ., 10.52610.79290.5366yesN/A
Q1QSV4ARLY_CHRSD4, ., 3, ., 2, ., 10.53060.78020.5246yesN/A
Q3JDS2ARLY_NITOC4, ., 3, ., 2, ., 10.50200.79290.5331yesN/A
A4XNY5ARLY_PSEMY4, ., 3, ., 2, ., 10.53410.79290.5366yesN/A
B9M377ARLY_GEOSF4, ., 3, ., 2, ., 10.51000.79290.5436yesN/A
A5GDA7ARLY_GEOUR4, ., 3, ., 2, ., 10.5120.79610.5458yesN/A
Q1I314ARLY_PSEE44, ., 3, ., 2, ., 10.52610.79290.5366yesN/A
A4VGX6ARLY_PSEU54, ., 3, ., 2, ., 10.53410.79290.5366yesN/A
Q3K4S8ARLY2_PSEPF4, ., 3, ., 2, ., 10.54210.79290.5366yesN/A
Q609I6ARLY_METCA4, ., 3, ., 2, ., 10.51210.78340.5290yesN/A
C6E6Y9ARLY_GEOSM4, ., 3, ., 2, ., 10.53010.79290.5436yesN/A
B3E9X6ARLY_GEOLS4, ., 3, ., 2, ., 10.51000.79290.5436yesN/A
B2I1W9ARLY_ACIBC4, ., 3, ., 2, ., 10.5280.79290.5220yesN/A
Q21EF4ARLY_SACD24, ., 3, ., 2, ., 10.5280.79610.5330yesN/A
Q39Z69ARLY_GEOMG4, ., 3, ., 2, ., 10.51800.79290.5436yesN/A
Q500N3ARLY_PSEU24, ., 3, ., 2, ., 10.53010.79290.5366yesN/A
A1AX52ARLY_RUTMC4, ., 3, ., 2, ., 10.53690.81840.5354yesN/A
Q2SQ67ARLY_HAHCH4, ., 3, ., 2, ., 10.51900.83430.5598yesN/A
P59618ARLY_PSEPK4, ., 3, ., 2, ., 10.52200.79290.5366yesN/A
B0VMC7ARLY_ACIBS4, ., 3, ., 2, ., 10.5280.79290.5220yesN/A
Q0A574ARLY_ALHEH4, ., 3, ., 2, ., 10.50600.79290.5320yesN/A
C1DJ48ARLY_AZOVD4, ., 3, ., 2, ., 10.53010.79290.5366yesN/A
Q4FVJ6ARLY_PSYA24, ., 3, ., 2, ., 10.50200.79290.5448yesN/A
Q48QD3ARLY_PSE144, ., 3, ., 2, ., 10.53410.79290.5366yesN/A
B0VDE4ARLY_ACIBY4, ., 3, ., 2, ., 10.5280.79290.5220yesN/A
P50987ARLY_PSEAE4, ., 3, ., 2, ., 10.52610.79290.5366yesN/A
B7I338ARLY_ACIB54, ., 3, ., 2, ., 10.5280.79290.5220yesN/A
Q74GT9ARLY_GEOSL4, ., 3, ., 2, ., 10.5080.79610.5458yesN/A
Q0VM25ARLY_ALCBS4, ., 3, ., 2, ., 10.53270.77700.5258yesN/A
Q3A1V0ARLY_PELCD4, ., 3, ., 2, ., 10.50600.79290.5401yesN/A
B7H1L9ARLY_ACIB34, ., 3, ., 2, ., 10.5280.79290.5220yesN/A
A6VE40ARLY_PSEA74, ., 3, ., 2, ., 10.52200.79290.5366yesN/A
Q31JG7ARLY_THICR4, ., 3, ., 2, ., 10.52200.79290.5389yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.2.10.824
3rd Layer4.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
PRK00855459 PRK00855, PRK00855, argininosuccinate lyase; Provi 1e-139
cd01359435 cd01359, Argininosuccinate_lyase, Argininosuccinat 1e-123
COG0165459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 1e-123
TIGR00838455 TIGR00838, argH, argininosuccinate lyase 1e-113
PRK04833455 PRK04833, PRK04833, argininosuccinate lyase; Provi 1e-101
PLN02646474 PLN02646, PLN02646, argininosuccinate lyase 7e-96
PRK12308 614 PRK12308, PRK12308, bifunctional argininosuccinate 5e-84
cd01334325 cd01334, Lyase_I, Lyase class I family; a group of 2e-58
PRK02186887 PRK02186, PRK02186, argininosuccinate lyase; Provi 4e-36
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 4e-32
pfam00206312 pfam00206, Lyase_1, Lyase 6e-22
PRK06705502 PRK06705, PRK06705, argininosuccinate lyase; Provi 2e-19
PRK06389434 PRK06389, PRK06389, argininosuccinate lyase; Provi 2e-15
cd01595381 cd01595, Adenylsuccinate_lyase_like, Adenylsuccina 1e-07
cd01597437 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco 4e-06
COG1027471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 6e-06
COG0015438 COG0015, PurB, Adenylosuccinate lyase [Nucleotide 3e-05
PRK06341166 PRK06341, PRK06341, single-stranded DNA-binding pr 0.001
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.002
PHA00370297 PHA00370, III, attachment protein 0.003
PHA00370297 PHA00370, III, attachment protein 0.004
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional Back     alignment and domain information 
 Score =  402 bits (1036), Expect = e-139
 Identities = 135/258 (52%), Positives = 183/258 (70%)

Query: 48  GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
             GTT PIDR RT ELL FD  + NSLD++SDRDF +EFLS  S+ ++HLSR++EE I++
Sbjct: 202 LAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILW 261

Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
            + +F +V LPD+  TGSSIMPQKKNPD+ ELIRGKTGRVYGNL  +LT+MK  PLAYN+
Sbjct: 262 SSQEFGFVELPDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAYNR 321

Query: 168 DMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKI 227
           D+QE K+PL D+++TL + L A   +L+ +  N  RM  +AG+GFS ATD+ADYL +K +
Sbjct: 322 DLQEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAGKGFSTATDLADYLVRKGV 381

Query: 228 PFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGA 287
           PFR  HEIVGK ++   +    L  LSLEEL+A    I ED++E+L+ E SV  ++ +G 
Sbjct: 382 PFREAHEIVGKAVREAEERGVDLADLSLEELQAFSPLITEDVYEVLTPEGSVAARNSIGG 441

Query: 288 TAPSQVQHSVDVFENFVK 305
           TAP QV+  +   +  + 
Sbjct: 442 TAPEQVREQIARAKARLA 459

Length = 459
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|164795 PHA00370, III, attachment protein Back     alignment and domain information
>gnl|CDD|164795 PHA00370, III, attachment protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
COG0165459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
KOG1316|consensus464 100.0
PLN02646474 argininosuccinate lyase 100.0
PRK06705502 argininosuccinate lyase; Provisional 100.0
TIGR00838455 argH argininosuccinate lyase. This model describes 100.0
PRK04833455 argininosuccinate lyase; Provisional 100.0
PRK00855459 argininosuccinate lyase; Provisional 100.0
cd01359435 Argininosuccinate_lyase Argininosuccinate lyase (a 100.0
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 100.0
PRK02186887 argininosuccinate lyase; Provisional 100.0
PRK08540449 adenylosuccinate lyase; Reviewed 100.0
PRK07492435 adenylosuccinate lyase; Provisional 100.0
PRK08470442 adenylosuccinate lyase; Provisional 100.0
PRK07380431 adenylosuccinate lyase; Provisional 100.0
PRK09053452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
cd01597437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 100.0
PRK06390451 adenylosuccinate lyase; Provisional 100.0
COG0015438 PurB Adenylosuccinate lyase [Nucleotide transport 100.0
TIGR00928435 purB adenylosuccinate lyase. This family consists 100.0
cd03302436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 100.0
PRK06389434 argininosuccinate lyase; Provisional 100.0
PRK12273472 aspA aspartate ammonia-lyase; Provisional 100.0
PRK13353473 aspartate ammonia-lyase; Provisional 100.0
cd01360387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 100.0
cd01595381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 100.0
cd01357450 Aspartase Aspartase. This subgroup contains Escher 100.0
PRK00485464 fumC fumarate hydratase; Reviewed 100.0
PRK12425464 fumarate hydratase; Provisional 100.0
TIGR00979458 fumC_II fumarate hydratase, class II. Putative fum 100.0
PLN00134458 fumarate hydratase; Provisional 100.0
PRK08937216 adenylosuccinate lyase; Provisional 100.0
cd01362455 Fumarase_classII Class II fumarases. This subgroup 100.0
PRK09285456 adenylosuccinate lyase; Provisional 100.0
cd01596450 Aspartase_like aspartase (L-aspartate ammonia-lyas 100.0
TIGR00839468 aspA aspartate ammonia-lyase. Fumarate hydratase s 100.0
PRK14515479 aspartate ammonia-lyase; Provisional 100.0
cd01598425 PurB PurB_like adenylosuccinases (adenylsuccinate 100.0
PLN02848458 adenylosuccinate lyase 100.0
cd01334325 Lyase_I Lyase class I family; a group of proteins 100.0
TIGR02426338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 99.97
PRK05975351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 99.97
COG0114462 FumC Fumarase [Energy production and conversion] 99.97
COG1027471 AspA Aspartate ammonia-lyase [Amino acid transport 99.97
KOG2700|consensus481 99.96
PF00206312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 99.92
KOG1317|consensus487 99.89
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 99.75
PF1469870 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1 99.57
PF1039781 ADSL_C: Adenylosuccinate lyase C-terminus; InterPr 99.27
PF08328115 ASL_C: Adenylosuccinate lyase C-terminal; InterPro 98.2
PF1041555 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR0 97.63
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-64  Score=486.41  Aligned_cols=261  Identities=49%  Similarity=0.808  Sum_probs=256.1

Q ss_pred             ccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCC
Q psy15027         45 ENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTG  124 (314)
Q Consensus        45 ~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~G  124 (314)
                      +||++||++||||+++|++|||+.+..|++|++++||+++|+++++++++.+|||||+|+++|+|+|||+|.+|+++++|
T Consensus       198 agAlaGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~EfgfI~l~D~~sTG  277 (459)
T COG0165         198 AGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTG  277 (459)
T ss_pred             ccccCCCCCCCCHHHHHHHcCCchhhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCceEeCCcccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhh
Q psy15027        125 SSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRM  204 (314)
Q Consensus       125 SSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm  204 (314)
                      ||||||||||+++|+||+++++++|.+.+++++++++|+.||||+|++++++++++..+..+|..|..++++|+||+++|
T Consensus       278 SSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~lPlaYnrDlQedke~lfds~~t~~~~l~~~~~mv~~l~vn~e~~  357 (459)
T COG0165         278 SSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERM  357 (459)
T ss_pred             cccCCCCCCCcHHHHHHHhhhhhHHHHHHHHHHHhcCcccccHHHHhhhHHHHHHHHHHHHHHHHHHHHHccCeeCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccC
Q psy15027        205 YVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDH  284 (314)
Q Consensus       205 ~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~  284 (314)
                      ++.+..+|+++|++|++|+++|+|||+||++|+++|+.+.+.|+++.++..++.+.+..+.++++.++++|+..|+.|.+
T Consensus       358 ~~a~~~gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~l~~~~~v~~R~~  437 (459)
T COG0165         358 REAAEAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVAKRNS  437 (459)
T ss_pred             HHHhhcccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHhccHHHHhhhccccchHHHHHhchHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999888888899999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHH
Q psy15027        285 VGATAPSQVQHSVDVFENFVK  305 (314)
Q Consensus       285 ~gG~a~~~v~~~i~~~~~~l~  305 (314)
                      +||++|++|++.|++++..++
T Consensus       438 ~Ggtap~~v~~~i~~~~~~l~  458 (459)
T COG0165         438 EGGTAPEEVREAIARAKARLA  458 (459)
T ss_pred             cCCCCHHHHHHHHHHHHHhhc
Confidence            999999999999999998774

>KOG1316|consensus Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>PRK08937 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2700|consensus Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>KOG1317|consensus Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B Back     alignment and domain information
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) [] Back     alignment and domain information
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli) Back     alignment and domain information
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
2e9f_A462 Crystal Structure Of T.th.hb8 Argininosuccinate Lya 9e-65
1tj7_A457 Structure Determination And Refinement At 2.44 A Re 2e-59
1k7w_A468 Crystal Structure Of S283a Duck Delta 2 Crystallin 2e-48
1hy0_A466 Crystal Structure Of Wild Type Duck Delta 1 Crystal 2e-48
1u15_A472 Crystal Structure Of A Duck-Delta-Crystallin-1 Doub 4e-48
1tju_A474 Crystal Structure Of T161s Duck Delta 2 Crystallin 4e-48
1hy1_A468 Crystal Structure Of Wild Type Duck Delta 2 Crystal 4e-48
1tjv_A474 Crystal Structure Of T161d Duck Delta 2 Crystallin 4e-48
1dcn_A447 Inactive Mutant H162n Of Delta 2 Crystallin With Bo 4e-48
1auw_A468 H91n Delta 2 Crystallin From Duck Length = 468 8e-48
1xwo_A465 Crystal Structrue Of Goose Delta Crystallin Length 7e-47
1i0a_A466 Crystal Structure Of Wild Type Turkey Delta 1 Cryst 7e-45
1aos_A464 Human Argininosuccinate Lyase Length = 464 5e-44
1k62_A464 Crystal Structure Of The Human Argininosuccinate Ly 2e-43
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (621), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 164/248 (66%)
Query: 51  TTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP 110
           T  PIDR+ T   L F +P  NSLD+++ RDF +E LS  +I ++HLSR++EE I++   
Sbjct: 206 TGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTE 265
Query: 111 QFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQ 170
           +F +V +PD+  TGSSIMPQKKNPDILELIR K GRV G    +  ++K  PLAYNKD+Q
Sbjct: 266 EFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQ 325
Query: 171 ECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFR 230
           E K+PL+D++ T    L     +L  +K+   RM+ +A  G+++AT++ADYLA+K +PFR
Sbjct: 326 EDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFR 385
Query: 231 SCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAP 290
             H +VG++++  V+E + L  L+LEEL+A H    ED   +L +E ++  +   G TAP
Sbjct: 386 EAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRRRSYGGTAP 445
Query: 291 SQVQHSVD 298
             V+  ++
Sbjct: 446 EAVRERLE 453
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457 Back     alignment and structure
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant Length = 468 Back     alignment and structure
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin (Eye Lens Protein) Length = 466 Back     alignment and structure
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop Mutant (Dlm) Length = 472 Back     alignment and structure
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin (Eye Lens Protein) Length = 468 Back     alignment and structure
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound Argininosuccinate Length = 447 Back     alignment and structure
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck Length = 468 Back     alignment and structure
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin Length = 465 Back     alignment and structure
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin (Eye Lens Protein) Length = 466 Back     alignment and structure
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase Length = 464 Back     alignment and structure
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase Q286r Mutant Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
1tj7_A457 Argininosuccinate lyase; crystallin, E. coli, fuma 100.0
2e9f_A462 Argininosuccinate lyase; alpha helix bundle; HET: 100.0
1k7w_A468 Delta 2 crystallin; eye lens protein, argininosucc 100.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 100.0
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 100.0
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 100.0
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 100.0
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 100.0
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 100.0
1yis_A478 Adenylosuccinate lyase; structural genomics, PSI, 100.0
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 100.0
2j91_A503 Adenylosuccinate lyase; disease mutation, adenylos 100.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 100.0
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 100.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 100.0
4hgv_A495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 100.0
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 100.0
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
Probab=100.00  E-value=9.5e-59  Score=458.13  Aligned_cols=258  Identities=42%  Similarity=0.691  Sum_probs=247.3

Q ss_pred             ccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCC
Q psy15027         47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSS  126 (314)
Q Consensus        47 A~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSS  126 (314)
                      |++||++++||+++++.|||+.+..|++||+++||+++|++++++.++++|+|||+|+++|+|+|||||++|+.+.+|||
T Consensus       199 A~aGt~~~~~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~e~g~iel~e~~~~GSS  278 (457)
T 1tj7_A          199 ALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSS  278 (457)
T ss_dssp             TTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCBCCT
T ss_pred             ccCCCCCCCCHHHHHHHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeccCCCCCCCC
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             CCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhHH
Q psy15027        127 IMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYV  206 (314)
Q Consensus       127 iMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~  206 (314)
                      ||||||||+.+|+++++|+++.|+...++.+++++|++||||++++|..+++++..+..++..+..|+++|+||+++|++
T Consensus       279 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~RDl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~~~m~~  358 (457)
T 1tj7_A          279 LMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQE  358 (457)
T ss_dssp             TCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHhhcchhhHHhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCCC
Q psy15027        207 SAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVG  286 (314)
Q Consensus       207 ~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~g  286 (314)
                      ++..+++++|+++++|+++|+|||+||++++++++.|.++|+++.+++.++...+...+++++.+++||+.++++|.++|
T Consensus       359 ~l~~~~~~at~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~g  438 (457)
T 1tj7_A          359 AAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKG  438 (457)
T ss_dssp             HHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTCCSTT
T ss_pred             HHhcCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhhhcHHHHHHhCCHHHHHhccCCCC
Confidence            99999999999999999999999999999999999999999999999988855555566778999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHH
Q psy15027        287 ATAPSQVQHSVDVFENFV  304 (314)
Q Consensus       287 G~a~~~v~~~i~~~~~~l  304 (314)
                      |++|++|+++|++++..|
T Consensus       439 G~a~~~v~~~i~~~~~~l  456 (457)
T 1tj7_A          439 GVSPQQVAQAIAFAQARL  456 (457)
T ss_dssp             CCSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999988765
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1tj7a_455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 3e-69
d1k62b_459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 1e-57
d1tjva_449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 3e-57
d1c3ca_429 a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga 3e-40
d1yfma_459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 9e-37
d1fuoa_456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 2e-33
d1vdka_460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 8e-31
d1j3ua_462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 2e-30
d1dofa_402 a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py 5e-28
d1re5a_448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 3e-27
d1jswa_459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 7e-26
d1q5na_444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 9e-22
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]

 Score =  220 bits (560), Expect = 3e-69
 Identities = 109/247 (44%), Positives = 157/247 (63%)

Query: 48  GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
             GT + IDR +    L F S + NSLDS+SDRD ++E LS  +I ++HLSR +E+ I F
Sbjct: 198 LAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFF 257

Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
              +  +V L D + +GSS+MPQKKNPD LELIRGK GRV G L  M+  +K  PLAYNK
Sbjct: 258 NTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNK 317

Query: 168 DMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKI 227
           DMQE K+ L D+++T   CL    L+LD ++    R   +A +G++ AT++ADYL  K +
Sbjct: 318 DMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGV 377

Query: 228 PFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGA 287
           PFR  H IVG+ +   +++ KPL+ L L EL+   + I ED++ ILS++  ++ +   G 
Sbjct: 378 PFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGG 437

Query: 288 TAPSQVQ 294
            +P QV 
Sbjct: 438 VSPQQVA 444
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1tj7a_455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1k62b_459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1tjva_449 Argininosuccinate lyase/delta-crystallin {Domestic 100.0
d1re5a_448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1q5na_444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1c3ca_429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 100.0
d1f1oa_408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 100.0
d1yfma_459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1j3ua_462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1vdka_460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1fuoa_456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
d1jswa_459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1dofa_402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 100.0
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-57  Score=446.41  Aligned_cols=258  Identities=42%  Similarity=0.691  Sum_probs=250.0

Q ss_pred             ccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCC
Q psy15027         47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSS  126 (314)
Q Consensus        47 A~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSS  126 (314)
                      +++|+++++||+++++.|||..+..|+++|+.+||+++++++++++++.+|+|||+|+++|+++|||++.+|+.+++|||
T Consensus       197 a~~g~~~~~~~~~~a~~Lg~~~~~~n~~~~~~~rd~~~e~~~~l~~~~~~L~ria~Dl~l~~s~e~~~~~~~~~~~~GSS  276 (455)
T d1tj7a_         197 ALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSS  276 (455)
T ss_dssp             TTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCBCCT
T ss_pred             ccccCcCcchHHHHHHHhCCCcccCCccchhhchHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhheeecccccccccc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             CCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhHH
Q psy15027        127 IMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYV  206 (314)
Q Consensus       127 iMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~  206 (314)
                      ||||||||+.+|+|+++|+++.|...+++.+++++|++||||++.++..+++++..+..++..+..++++|+||+++|++
T Consensus       277 iMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~~l~~~~~~i~~l~vn~erm~~  356 (455)
T d1tj7a_         277 LMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQE  356 (455)
T ss_dssp             TCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred             ccccccCchHHHHHHhHHHHHHhHHHHHHHHHhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCCC
Q psy15027        207 SAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVG  286 (314)
Q Consensus       207 ~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~g  286 (314)
                      +++.+++++|+++++|+++|+|||+||++|++++++|.++|+++.++.+++++.+...+++||.++|||+++|++|.++|
T Consensus       357 ~~~~~~~~at~la~~Lv~kgi~freAh~~V~~~v~~A~~~g~~l~el~l~e~~~~~~~~~~di~~~ldp~~~v~~r~s~G  436 (455)
T d1tj7a_         357 AAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKG  436 (455)
T ss_dssp             HHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTCCSTT
T ss_pred             HhhcchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHhcccCHHHHHHhCCHHHHHHhCcCCC
Confidence            99999999999999999999999999999999999999999999999999988777888899999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHH
Q psy15027        287 ATAPSQVQHSVDVFENFV  304 (314)
Q Consensus       287 G~a~~~v~~~i~~~~~~l  304 (314)
                      |++|++|+++|++++++|
T Consensus       437 G~ap~~V~~~i~~ar~~L  454 (455)
T d1tj7a_         437 GVSPQQVAQAIAFAQARL  454 (455)
T ss_dssp             CCSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999999876
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure