Psyllid ID: psy1505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MKKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIFK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHcccccccccEEEEEc
Coil and Loop (DISEMBL)
mkkrkkkkKKKKKKKKKKKKKKKNLLDIFKAVYKNadiyllddplsavdmHVGKHLFEdcisggiipminspgiglifk
Flexible Loop (DISEMBL)
mkkrkkkkkkkkkkkkkkkkkkknllDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIFK
Low Complexity Region (SEG)
MkkrkkkkkkkkkkkkkkkkkkkNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIFK
Disordered region (IsUnstruct)
************************LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF*
Disordered Region (DISOPRED)
******K************KKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF*
Disordered Region (DISEMBL)
**********************KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIFK
Disordered Region (DISPRO)
*KKRKKKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIFK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q9M1C7	1506	ABC transporter C family	no	N/A	0.531	0.027	0.642	7e-11
Q7FB56	1053	Putative ABC transporter	yes	N/A	0.531	0.039	0.642	7e-11
P33527	1531	Multidrug resistance-asso	no	N/A	0.506	0.026	0.65	1e-09
Q8ST87	1334	ABC transporter C family	yes	N/A	0.531	0.031	0.619	2e-09
Q54U44	1323	ABC transporter C family	no	N/A	0.531	0.031	0.619	2e-09
Q6Y306	1366	Multidrug resistance-asso	yes	N/A	0.506	0.029	0.6	2e-09
Q80WJ6	1366	Multidrug resistance-asso	yes	N/A	0.506	0.029	0.6	2e-09
Q96J66	1382	ATP-binding cassette sub-	no	N/A	0.506	0.028	0.625	3e-09
Q54JR2	1412	ABC transporter C family	no	N/A	0.531	0.029	0.595	3e-09
Q864R9	1531	Multidrug resistance-asso	N/A	N/A	0.506	0.026	0.65	3e-09

>sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + I +AVY+NADIYLLDDP SAVD H G+ LFEDC+ G
Sbjct: 759 QKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMG 800

Pump for glutathione S-conjugates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4

>sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + I +AVY+NADIYLLDDP SAVD H G+ LFEDC+ G
Sbjct: 343 QKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMG 384

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +K  + + +AVY NADIYL DDPLSAVD HVGKH+FE+ I
Sbjct: 772 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 811

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Homo sapiens (taxid: 9606)

>sp|Q8ST87|ABCCA_DICDI ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + I +AVY +AD+Y+LDDPLSAVD HVGKHLF  C  G
Sbjct: 553 QKQRVSIARAVYSDADVYILDDPLSAVDSHVGKHLFHKCFKG 594

Dictyostelium discoideum (taxid: 44689)

>sp|Q54U44|ABCCC_DICDI ABC transporter C family member 12 OS=Dictyostelium discoideum GN=abcC12 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + I +AVY +AD+Y+LDDPLSAVD HVGKHLF  C  G
Sbjct: 558 QKQRVSIARAVYSDADVYILDDPLSAVDSHVGKHLFHKCFKG 599

Dictyostelium discoideum (taxid: 44689)

>sp|Q6Y306|MRP9_RAT Multidrug resistance-associated protein 9 OS=Rattus norvegicus GN=Abcc12 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 32/40 (80%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           ++  + + +AVY N  +YLLDDPLSAVD HVGKH+FE+CI
Sbjct: 608 QRQRISLARAVYANRQLYLLDDPLSAVDAHVGKHVFEECI 647

Probable transporter.

Rattus norvegicus (taxid: 10116)

>sp|Q80WJ6|MRP9_MOUSE Multidrug resistance-associated protein 9 OS=Mus musculus GN=Abcc12 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 32/40 (80%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           ++  + + +AVY N  +YLLDDPLSAVD HVGKH+FE+CI
Sbjct: 608 QRQRISLARAVYANRQLYLLDDPLSAVDAHVGKHVFEECI 647

Probable transporter.

Mus musculus (taxid: 10090)

>sp|Q96J66|ABCCB_HUMAN ATP-binding cassette sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +K  + + +AVY +  IYLLDDPLSAVD HVGKH+FE+CI
Sbjct: 638 QKQRISLARAVYSDRQIYLLDDPLSAVDAHVGKHIFEECI 677

Participates in physiological processes involving bile acids, conjugated steroids and cyclic nucleotides. Enhances the cellular extrusion of cAMP and cGMP. Stimulates the ATP-dependent uptake of a range of physiological and synthetic lipophilic anions, including the glutathione S-conjugates leukotriene C4 and dinitrophenyl S-glutathione, steroid sulfates such as dehydroepiandrosterone 3-sulfate (DHEAS) and estrone 3-sulfate, glucuronides such as estradiol 17-beta-D-glucuronide (E(2)17betaG), the monoanionic bile acids glycocholate and taurocholate, and methotrexate. Probably functions to secrete earwax.

Homo sapiens (taxid: 9606)

>sp|Q54JR2|ABCC3_DICDI ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + I +AVY ++D+Y+LDDPLSAVD HVGKHLF  C  G
Sbjct: 568 QKQRVSIARAVYSDSDVYILDDPLSAVDAHVGKHLFHRCFKG 609

Dictyostelium discoideum (taxid: 44689)

>sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +K  + + +AVY NADIYL DDPLSAVD HVGKH+FE+ I
Sbjct: 772 QKQRVSLARAVYCNADIYLFDDPLSAVDAHVGKHIFENVI 811

Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
91082279	1271	PREDICTED: similar to CG7627 CG7627-PA [	0.531	0.033	0.738	2e-10
91082383	1307	PREDICTED: similar to AGAP006427-PA [Tri	0.531	0.032	0.690	3e-10
328875788	1339	ABC transporter C family protein [Dictyo	0.531	0.031	0.690	6e-10
270006563	1317	hypothetical protein TcasGA2_TC010434 [T	0.481	0.028	0.736	9e-10
357612899	979	putative ATP-dependent bile acid permeas	0.481	0.038	0.710	1e-09
357626233	1174	hypothetical protein KGM_19552 [Danaus p	0.481	0.032	0.710	1e-09
242005590	1146	predicted protein [Pediculus humanus cor	0.481	0.033	0.736	1e-09
299116599	893	ABC transporter ABCC.12 [Ectocarpus sili	0.531	0.047	0.595	1e-09
194766297	1289	GF24219 [Drosophila ananassae] gi|190617	0.481	0.029	0.684	1e-09
380016292	1290	PREDICTED: multidrug resistance-associat	0.455	0.027	0.75	1e-09

>gi|91082279|ref|XP_973693.1| PREDICTED: similar to CG7627 CG7627-PA [Tribolium castaneum] gi|270007209|gb|EFA03657.1| hypothetical protein TcasGA2_TC013751 [Tribolium castaneum]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 37/42 (88%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  +++ +AVYK+ADIYLLDDPLSAVD HVGK LFEDCISG
Sbjct: 539 QKARINLARAVYKDADIYLLDDPLSAVDTHVGKRLFEDCISG 580

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082383|ref|XP_968748.1| PREDICTED: similar to AGAP006427-PA [Tribolium castaneum] gi|270007500|gb|EFA03948.1| hypothetical protein TcasGA2_TC014092 [Tribolium castaneum]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  +++ +A+YK ADIYLLDDPLSAVD HVGK LFEDCI+G
Sbjct: 558 QKARINLARAIYKEADIYLLDDPLSAVDTHVGKQLFEDCITG 599

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328875788|gb|EGG24152.1| ABC transporter C family protein [Dictyostelium fasciculatum]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + I +AVY NADIY+LDDPLSAVD HVGKH+F+ CISG
Sbjct: 577 QKQRVSIARAVYNNADIYILDDPLSAVDAHVGKHIFQKCISG 618

Source: Dictyostelium fasciculatum

Species: Dictyostelium fasciculatum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|270006563|gb|EFA03011.1| hypothetical protein TcasGA2_TC010434 [Tribolium castaneum]

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 34/38 (89%)

Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +++ +AVYK ADIYLLDDPLSAVD HVGK LFE+CI+G
Sbjct: 575 INLARAVYKQADIYLLDDPLSAVDTHVGKQLFENCIAG 612

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612899|gb|EHJ68225.1| putative ATP-dependent bile acid permease [Danaus plexippus]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           + + +AVYK ADIYLLDDPLSAVD HVG+HLFE C+ G
Sbjct: 559 ISLARAVYKRADIYLLDDPLSAVDAHVGRHLFESCVVG 596

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626233|gb|EHJ76393.1| hypothetical protein KGM_19552 [Danaus plexippus]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           + + +AVYK ADIYLLDDPLSAVD HVG+HLFE C+ G
Sbjct: 385 ISLARAVYKRADIYLLDDPLSAVDAHVGRHLFESCVVG 422

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005590|ref|XP_002423647.1| predicted protein [Pediculus humanus corporis] gi|212506807|gb|EEB10909.1| predicted protein [Pediculus humanus corporis]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +++ +AVY+ ADIYLLDDPLSAVD HVGKHL EDCI G
Sbjct: 555 INLARAVYREADIYLLDDPLSAVDAHVGKHLMEDCIVG 592

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|299116599|emb|CBN74787.1| ABC transporter ABCC.12 [Ectocarpus siliculosus]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 35/42 (83%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + I +A Y NAD+Y+LDDPLSAVD HVG+HLF++C++G
Sbjct: 528 QKQRVSIARAAYANADVYILDDPLSAVDAHVGRHLFDECLAG 569

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|194766297|ref|XP_001965261.1| GF24219 [Drosophila ananassae] gi|190617871|gb|EDV33395.1| GF24219 [Drosophila ananassae]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 33/38 (86%)

Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           + + +AVY+ ADIYLLDDPLSAVD HVG+HLFE+C+ G
Sbjct: 542 ISLARAVYRQADIYLLDDPLSAVDTHVGRHLFEECMRG 579

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016292|ref|XP_003692121.1| PREDICTED: multidrug resistance-associated protein 4-like [Apis florea]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 33/36 (91%)

Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +++ +AVY+NADIYLLDDPLSAVD HVGKHLF +CI
Sbjct: 542 INLARAVYRNADIYLLDDPLSAVDTHVGKHLFNECI 577

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
FB|FBgn0032908	1225	CG9270 [Drosophila melanogaste	0.481	0.031	0.657	9.8e-09
FB|FBgn0263316	1316	Mrp4 "Multidrug resistance pro	0.481	0.028	0.657	1.1e-08
FB|FBgn0038740	1362	CG4562 [Drosophila melanogaste	0.481	0.027	0.657	1.1e-08
FB|FBgn0051793	1307	CG31793 [Drosophila melanogast	0.430	0.026	0.705	1.4e-08
ZFIN|ZDB-GENE-050517-25	1368	abcc12 "ATP-binding cassette,	0.455	0.026	0.694	1.8e-08
UNIPROTKB|F1NCZ3	1310	F1NCZ3 "Uncharacterized protei	0.518	0.031	0.642	2.2e-08
DICTYBASE|DDB_G0280973	1323	abcC12 "ABC transporter C fami	0.481	0.028	0.657	2.2e-08
DICTYBASE|DDB_G0280977	1334	abcC10 "ABC transporter C fami	0.481	0.028	0.657	2.3e-08
UNIPROTKB|E2RAJ6	1364	ABCC12 "Uncharacterized protei	0.455	0.026	0.694	2.3e-08
UNIPROTKB|E1BM99	1365	ABCC12 "Uncharacterized protei	0.455	0.026	0.666	3e-08

FB|FBgn0032908 CG9270 [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 9.8e-09, P = 9.8e-09
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
             + + +AVY+ AD YLLDDPLSAVD HVG+HLFE+C+ G
Sbjct:   477 ISLARAVYRQADTYLLDDPLSAVDTHVGRHLFEECMRG 514

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0263316 Mrp4 "Multidrug resistance protein 4 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
             + + +AVY+ ADIYLLDDPLSAVD HVG+HLF+ C+ G
Sbjct:   555 ISLARAVYRRADIYLLDDPLSAVDTHVGRHLFDQCMRG 592

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034059 "response to anoxia" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

FB|FBgn0038740 CG4562 [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
             + + +AVY+ ADIYLLDDPLSAVD HVG+HLF+ C+ G
Sbjct:   576 ISLARAVYRKADIYLLDDPLSAVDTHVGRHLFDQCMRG 613

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0051793 CG31793 [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 24/34 (70%), Positives = 31/34 (91%)

Query:    30 KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
             +AVY+ AD+YLLDDPLSAVD HVG+HLF++C+ G
Sbjct:   570 RAVYRRADVYLLDDPLSAVDTHVGRHLFDECMRG 603

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050517-25 abcc12 "ATP-binding cassette, sub-family C (CFTR/MRP), member 12" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
             + + +AVY N DI+LLDDPLSAVD HVGKH+FE+CI
Sbjct:   610 VSLARAVYSNRDIFLLDDPLSAVDAHVGKHIFEECI 645

GO:0016887 "ATPase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NCZ3 F1NCZ3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 27/42 (64%), Positives = 34/42 (80%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS-GGII 66
             + + +AVY NAD+YLLDDPLSAVD+HVGKHLFE  I   G++
Sbjct:   542 VSLARAVYSNADLYLLDDPLSAVDVHVGKHLFEKLIGPSGLL 583

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0046581 "intercellular canaliculus" evidence=IEA

DICTYBASE|DDB_G0280973 abcC12 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 142 (55.0 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 25/38 (65%), Positives = 30/38 (78%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
             + I +AVY +AD+Y+LDDPLSAVD HVGKHLF  C  G
Sbjct:   562 VSIARAVYSDADVYILDDPLSAVDSHVGKHLFHKCFKG 599

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0280977 abcC10 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 142 (55.0 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 25/38 (65%), Positives = 30/38 (78%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
             + I +AVY +AD+Y+LDDPLSAVD HVGKHLF  C  G
Sbjct:   557 VSIARAVYSDADVYILDDPLSAVDSHVGKHLFHKCFKG 594

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2RAJ6 ABCC12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
             + + +AVY N +IYLLDDPLSAVD HVGKH+FE+CI
Sbjct:   610 ISLARAVYSNHEIYLLDDPLSAVDAHVGKHVFEECI 645

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BM99 ABCC12 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 24/36 (66%), Positives = 31/36 (86%)

Query:    26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
             + + +A+Y N +IYLLDDPLSAVD HVGKH+FE+CI
Sbjct:   610 ISLARAIYSNHEIYLLDDPLSAVDAHVGKHVFEECI 645

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80WJ6	MRP9_MOUSE	No assigned EC number	0.6	0.5063	0.0292	yes	N/A
Q6Y306	MRP9_RAT	No assigned EC number	0.6	0.5063	0.0292	yes	N/A
P39109	YCFI_YEAST	No assigned EC number	0.5833	0.4556	0.0237	yes	N/A
Q8ST87	ABCCA_DICDI	No assigned EC number	0.6190	0.5316	0.0314	yes	N/A
Q7FB56	AB15C_ARATH	3, ., 6, ., 3, ., 4, 4	0.6428	0.5316	0.0398	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	8e-19
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-14
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	3e-14
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	2e-13
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	8e-11
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-06
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	4e-06
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	6e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	5e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.001
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.001
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.002
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	0.002
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	0.002
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.004

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 75.6 bits (187), Expect = 8e-19
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 31  AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           AVY +ADIYLLDDPLSAVD HVG+H+FE+CI G
Sbjct: 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILG 173

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 30  KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +AVY N D+YLLDDPLSA+D HVG+ + E+C  G
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLG 828

Length = 1560

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 65.4 bits (159), Expect = 3e-14
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +K  + + +AVY NADIYL DDPLSAVD HVGKH+FE  I
Sbjct: 765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 63
           +K  + + +AVY N+D+Y+ DDPLSA+D HVG+ +F+ CI  
Sbjct: 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786

Length = 1622

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 55.8 bits (134), Expect = 8e-11
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGI 65
           +K  + + +AVY N+DIY+ DDPLSA+D HV   +F+ C+   +
Sbjct: 745 QKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788

Length = 1495

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 30  KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +AVYK+AD+YLLD P + +D+   K +FE C+
Sbjct: 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 30  KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 30  KAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +A+Y+N +I  LDDP SA+D+H+  HL ++ I
Sbjct: 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 2   KKRKKKKKKKKKKKKKKKKKKKNL 25
           +  KK+K+K+K K KK+ +  KN+
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKNI 422

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 2   KKRKKKKKKKKKKKKKKKKKKKN 24
            KR +KK+K+K+K K KK+ +  
Sbjct: 397 AKRAEKKEKEKEKPKVKKRHRDT 419

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 2   KKRKKKKKKKKKKKKKKKKKKK 23
           KK   K+ +KK+K+K+K K KK
Sbjct: 393 KKVLAKRAEKKEKEKEKPKVKK 414

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 2   KKRKKKKKKKKKKKKKKKKKKK 23
           K+++K+K K KK+ +  K   K
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGK 424

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 2   KKRKKKKKKKKKKKKKKKKKKKNLLDIFK 30
             ++ +KK+K+K+K K KK+ ++  +I K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424

Length = 434

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 22  KKNLLDIFKAVYKNADIYLLDDPLSAVD 49
           +K  + I +A+  NA+I +LDD LSAVD
Sbjct: 456 QKQRISIARALLLNAEILILDDALSAVD 483

Length = 569

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 33.9 bits (79), Expect = 0.002
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 31  AVYKNADIYLLDDPLSAVDMH 51
           A+ ++  I +LD+  SA+D  
Sbjct: 110 ALLRDPPILILDEATSALDPE 130

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 2   KKRKKKKKKKKKKKKKKKKKKK 23
           +KRKKKKK+KKK KK+KKK +K
Sbjct: 393 QKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.92
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.88
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.87
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.87
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.87
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.87
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.86
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.84
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.84
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.84
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.84
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.83
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.83
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.83
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.83
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.83
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.83
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.83
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.83
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.82
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.82
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.82
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.82
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.82
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.82
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.82
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.82
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.82
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.82
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.82
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.82
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.82
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.81
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.81
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.81
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.81
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.81
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.81
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.81
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.81
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.81
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.81
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.81
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.81
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.81
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.81
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.81
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.81
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.81
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.81
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.81
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.81
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.81
PRK10908	222	cell division protein FtsE; Provisional	99.81
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.81
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.81
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.81
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.81
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.81
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.81
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.81
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.81
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.81
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.8
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.8
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.8
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.8
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.8
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.8
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.8
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.8
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.8
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.8
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.8
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.8
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.8
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.8
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.8
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.8
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.8
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.8
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.8
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.8
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.8
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.8
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.8
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.79
COG1123	539	ATPase components of various ABC-type transport sy	99.79
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.79
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.79
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.79
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.79
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.79
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.79
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.79
PRK10938	490	putative molybdenum transport ATP-binding protein	99.79
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.79
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.79
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.79
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.79
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.79
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.79
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.79
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.79
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.79
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.79
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.79
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.79
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.79
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.79
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.79
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.79
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.79
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.79
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.79
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.79
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.79
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.79
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.79
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.78
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.78
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.78
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.78
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.78
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.78
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.78
COG1123	539	ATPase components of various ABC-type transport sy	99.78
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.78
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.78
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.78
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.78
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.78
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.78
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.78
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.78
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.78
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.78
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.78
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.78
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.78
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.78
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.78
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.78
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.78
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.78
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.78
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.78
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.78
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.78
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.78
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.78
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.78
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.78
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.77
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.77
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.77
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.77
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.77
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.77
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.77
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.77
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.77
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.77
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.77
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.77
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.77
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.77
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.77
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.77
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.77
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.77
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.77
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.77
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.77
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.77
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.77
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.77
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.77
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.77
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.77
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.77
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.77
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.77
cd03246	173	ABCC_Protease_Secretion This family represents the	99.77
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.77
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.77
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.77
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.76
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.76
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.76
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.76
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.76
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.76
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.76
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.76
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.76
COG4172	534	ABC-type uncharacterized transport system, duplica	99.76
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.76
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.76
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.76
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.76
PRK13409	590	putative ATPase RIL; Provisional	99.76
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.76
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.76
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.75
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.75
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.75
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.75
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.75
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.75
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.75
PRK10938	490	putative molybdenum transport ATP-binding protein	99.75
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.75
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.75
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.75
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.75
COG4181	228	Predicted ABC-type transport system involved in ly	99.75
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.75
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.75
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.75
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.74
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.74
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.74
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.73
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.73
COG4172	534	ABC-type uncharacterized transport system, duplica	99.73
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.73
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.73
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.73
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.72
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.72
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.72
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.72
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.72
PRK13409	590	putative ATPase RIL; Provisional	99.72
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.71
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.71
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.71
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.71
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.71
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.71
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.71
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.7
PRK11147	635	ABC transporter ATPase component; Reviewed	99.7
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.7
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.7
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.7
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.7
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.7
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.7
PLN03211	659	ABC transporter G-25; Provisional	99.7
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.69
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.69
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.69
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.69
PRK11147	635	ABC transporter ATPase component; Reviewed	99.69
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.69
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.68
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.68
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.68
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.68
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.68
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.68
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.68
PLN03073	718	ABC transporter F family; Provisional	99.68
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.67
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.67
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.67
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.67
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.67
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.67
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.67
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.67
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.67
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.66
PLN03073	718	ABC transporter F family; Provisional	99.66
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.66
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.66
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.66
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.66
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.66
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.66
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.66
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.66
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.66
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.65
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.65
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.65
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.65
KOG0055|consensus	1228		99.65
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.65
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.64
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.64
PLN03140	1470	ABC transporter G family member; Provisional	99.64
COG0488	530	Uup ATPase components of ABC transporters with dup	99.63
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.63
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.63
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.62
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.62
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.62
KOG0058|consensus	716		99.62
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.61
COG4988	559	CydD ABC-type transport system involved in cytochr	99.61
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.6
PLN03232	1495	ABC transporter C family member; Provisional	99.6
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.6
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.59
COG4559	259	ABC-type hemin transport system, ATPase component	99.58
PLN03130	1622	ABC transporter C family member; Provisional	99.58
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.58
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.58
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.57
KOG0055|consensus	1228		99.57
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.57
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.57
KOG0061|consensus	613		99.57
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.56
COG4987	573	CydC ABC-type transport system involved in cytochr	99.55
PTZ00243	1560	ABC transporter; Provisional	99.55
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.55
KOG0057|consensus	591		99.55
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.54
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.54
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.54
KOG0059|consensus	885		99.53
PLN03232	1495	ABC transporter C family member; Provisional	99.53
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.53
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.53
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.52
PLN03130	1622	ABC transporter C family member; Provisional	99.52
COG0488	530	Uup ATPase components of ABC transporters with dup	99.51
PLN03140	1470	ABC transporter G family member; Provisional	99.51
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.5
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.49
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.49
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.48
KOG0062|consensus	582		99.48
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.48
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.48
PTZ00243	1560	ABC transporter; Provisional	99.47
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.47
KOG0054|consensus	1381		99.45
KOG0927|consensus	614		99.44
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.42
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.4
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.4
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.39
PHA02562	562	46 endonuclease subunit; Provisional	99.39
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.39
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.37
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.35
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.35
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.34
PRK03918	880	chromosome segregation protein; Provisional	99.33
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.3
COG4178	604	ABC-type uncharacterized transport system, permeas	99.3
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.3
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.29
KOG0927|consensus	614		99.28
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.28
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.26
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.25
KOG0062|consensus	582		99.24
KOG0065|consensus	1391		99.22
KOG0056|consensus	790		99.21
PRK10869	553	recombination and repair protein; Provisional	99.21
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.18
PRK01156	895	chromosome segregation protein; Provisional	99.18
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.18
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.11
KOG0060|consensus	659		99.1
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	99.09
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.09
KOG0066|consensus	807		99.05
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.99
TIGR00611	365	recf recF protein. All proteins in this family for	98.98
PRK00064	361	recF recombination protein F; Reviewed	98.97
PRK02224	880	chromosome segregation protein; Provisional	98.93
KOG0054|consensus	1381		98.91
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.9
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.83
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.79
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.78
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.78
PRK14079	349	recF recombination protein F; Provisional	98.77
KOG0066|consensus	807		98.73
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.72
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.68
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.67
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.62
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.61
KOG2355|consensus	291		98.6
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.6
KOG0064|consensus	728		98.58
KOG0063|consensus	592		98.53
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.52
KOG0063|consensus	592		98.49
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.42
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.36
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.29
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.25
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.25
KOG0065|consensus	1391		98.18
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.17
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.94
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.89
PRK13695	174	putative NTPase; Provisional	97.61
KOG0933|consensus	1174		97.53
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.44
PF13175	415	AAA_15: AAA ATPase domain	97.35
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.32
COG3910	233	Predicted ATPase [General function prediction only	97.24
COG4637	373	Predicted ATPase [General function prediction only	97.22
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.15
KOG0964|consensus	1200		97.14
PF13166	712	AAA_13: AAA domain	97.08
PRK06067	234	flagellar accessory protein FlaH; Validated	97.01
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.95
PRK13891	852	conjugal transfer protein TrbE; Provisional	96.93
PRK13830	818	conjugal transfer protein TrbE; Provisional	96.88
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	96.82
cd01128	249	rho_factor Transcription termination factor rho is	96.5
KOG0018|consensus	1141		95.87
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.82
KOG0962|consensus	1294		95.81
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	95.5
KOG0996|consensus	1293		94.99
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	94.98
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	94.91
PRK05399	854	DNA mismatch repair protein MutS; Provisional	94.76
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	94.57
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	93.99
smart00382	148	AAA ATPases associated with a variety of cellular	93.67
PF13514	1111	AAA_27: AAA domain	93.21
PRK04863	1486	mukB cell division protein MukB; Provisional	93.16
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	92.58
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	92.41
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	91.98
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	91.73
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	91.3
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	90.71
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	90.49
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	87.76
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	87.46
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	87.4
PRK08699	325	DNA polymerase III subunit delta'; Validated	86.98
PRK14088	440	dnaA chromosomal replication initiation protein; P	86.87
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	86.25
KOG0250|consensus	1074		85.29
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	83.54
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	82.74
TIGR03581	236	EF_0839 conserved hypothetical protein EF_0839/AHA	81.31
COG4938	374	Uncharacterized conserved protein [Function unknow	80.84

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=1.2e-25  Score=155.46  Aligned_cols=64  Identities=17%  Similarity=0.299  Sum_probs=56.6

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      +++++.||.+|||||+|||+|||||+.+|+++++|||||+|||+...++++.      +..+.+.|+|++
T Consensus       127 ~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~v------m~~LA~eGmTMi  190 (240)
T COG1126         127 ADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV------MKDLAEEGMTMI  190 (240)
T ss_pred             hhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH------HHHHHHcCCeEE
Confidence            5789999999999999999999999999999999999999999999999994      455555555544

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=4.4e-23  Score=144.33  Aligned_cols=64  Identities=16%  Similarity=0.259  Sum_probs=54.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      ++.++||++|||||||||+|||||+.+|++++||||+++||+..+..+.+++     ...+.+++.|++
T Consensus       122 ~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l-----~~lw~~~~~Tvl  185 (248)
T COG1116         122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL-----LRLWEETRKTVL  185 (248)
T ss_pred             chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH-----HHHHHhhCCEEE
Confidence            6899999999999999999999999999999999999999999999998873     333444444444

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=9e-23  Score=146.86  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=56.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhc-CCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINS-PGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~-~g~~~~~   78 (79)
                      +++++||.+|||||||||+|||||+.+|++++.|||||+|||...+.++++      +..++. .|.|+++
T Consensus       133 dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L------L~~In~~lglTIvl  197 (339)
T COG1135         133 DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL------LKDINRELGLTIVL  197 (339)
T ss_pred             hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH------HHHHHHHcCCEEEE
Confidence            788999999999999999999999999999999999999999999999995      455543 3666553

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.3e-22  Score=141.29  Aligned_cols=64  Identities=19%  Similarity=0.381  Sum_probs=55.9

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++++++.++|||||+|||-|||||+++|++++|||||+|+|+..+..++++      +..++++|.||+
T Consensus       130 ~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l------L~~l~~eg~tIl  193 (254)
T COG1121         130 EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL------LKELRQEGKTVL  193 (254)
T ss_pred             hhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH------HHHHHHCCCEEE
Confidence            3789999999999999999999999999999999999999999999999995      444444455544

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.4e-22  Score=140.50  Aligned_cols=67  Identities=19%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCc
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGI   74 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~   74 (79)
                      |+.+++.+..|||||+|||+|||||+.+|++|||||||++|||....++.+++.  ...+++.+++|++
T Consensus       140 KDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnm  208 (253)
T COG1117         140 KDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNM  208 (253)
T ss_pred             HHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence            688999999999999999999999999999999999999999999999999765  4456666677765

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=3.4e-22  Score=138.47  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             Hhc-cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKK-KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~-~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+ ++|.+|||||||||+|||||+.+|++|+.||||++||..+...+++++
T Consensus       134 ~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll  185 (226)
T COG1136         134 RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL  185 (226)
T ss_pred             hhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence            344 889999999999999999999999999999999999999999999964

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=5.6e-22  Score=138.70  Aligned_cols=69  Identities=17%  Similarity=0.328  Sum_probs=58.4

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCcee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIGL   76 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~~   76 (79)
                      +++++++|.+|||||+||++|||||+.+|++||+||||++||...+.++++++.    +-+++..+.+|+.++
T Consensus       132 ~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~  204 (252)
T COG1124         132 PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL  204 (252)
T ss_pred             HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence            578999999999999999999999999999999999999999999999999753    223444455555443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.84  E-value=3e-21  Score=135.90  Aligned_cols=65  Identities=18%  Similarity=0.312  Sum_probs=57.2

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhh-cCCceeee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMIN-SPGIGLIF   78 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~-~~g~~~~~   78 (79)
                      .+++++++.+||||||||+.|||||+++|++++|||||++||..++-+++++      +..++ ++|.|+++
T Consensus       129 ~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l------l~~l~~~~~~tvv~  194 (258)
T COG1120         129 EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL------LRDLNREKGLTVVM  194 (258)
T ss_pred             HHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH------HHHHHHhcCCEEEE
Confidence            4688999999999999999999999999999999999999999999999994      55554 44666553

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.84  E-value=3.1e-21  Score=131.93  Aligned_cols=65  Identities=17%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      +++++..|.+|||||+|||+||||++++|+++|.||||.+|||....+++++      ...++..|.||++
T Consensus       128 ~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l------feeinr~GtTVl~  192 (223)
T COG2884         128 KHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL------FEEINRLGTTVLM  192 (223)
T ss_pred             chhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH------HHHHhhcCcEEEE
Confidence            5788999999999999999999999999999999999999999999999994      5556666666654

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=3.4e-21  Score=131.94  Aligned_cols=64  Identities=16%  Similarity=0.298  Sum_probs=57.1

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++.+.||..|||||+||++|||||+.+|+++++||||++|||+..-+++.      .+..+.++|.|++
T Consensus       143 ~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLk------v~~~LAeEgrTMv  206 (256)
T COG4598         143 AEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK------VMQDLAEEGRTMV  206 (256)
T ss_pred             hhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHH------HHHHHHHhCCeEE
Confidence            467789999999999999999999999999999999999999999999999      4566666666655

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.84  E-value=5.2e-21  Score=128.79  Aligned_cols=52  Identities=13%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       130 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  181 (216)
T TIGR00960       130 GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF  181 (216)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.83  E-value=9.9e-21  Score=126.88  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       126 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  177 (211)
T cd03225         126 GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL  177 (211)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999954

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.83  E-value=9.6e-21  Score=125.54  Aligned_cols=63  Identities=17%  Similarity=0.291  Sum_probs=53.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.++      +..+..+|.+++
T Consensus       119 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~------l~~~~~~~~til  181 (190)
T TIGR01166       119 GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI------LRRLRAEGMTVV  181 (190)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH------HHHHHHcCCEEE
Confidence            456889999999999999999999999999999999999999999999995      444444455544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.83  E-value=9.6e-21  Score=126.80  Aligned_cols=52  Identities=21%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       118 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  169 (205)
T cd03226         118 ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI  169 (205)
T ss_pred             hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.83  E-value=1.3e-20  Score=126.67  Aligned_cols=52  Identities=17%  Similarity=0.346  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       124 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  175 (213)
T cd03235         124 ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELL  175 (213)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=4.7e-21  Score=133.97  Aligned_cols=64  Identities=22%  Similarity=0.374  Sum_probs=56.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhc-CCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINS-PGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~-~g~~~~~   78 (79)
                      +++..++.+|||||+|||+|||||+++|+++|.|||+++|||.....+++.      +..++. +|.|+++
T Consensus       139 ~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~------l~~in~~~g~Tvi~  203 (258)
T COG3638         139 DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI------LKDINQEDGITVIV  203 (258)
T ss_pred             HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHH------HHHHHHHcCCEEEE
Confidence            678889999999999999999999999999999999999999999999994      555543 4677664

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.83  E-value=1.7e-20  Score=125.94  Aligned_cols=52  Identities=13%  Similarity=0.263  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus       129 ~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  180 (214)
T TIGR02673       129 HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL  180 (214)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999964

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.83  E-value=1.4e-20  Score=126.42  Aligned_cols=52  Identities=21%  Similarity=0.351  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus       122 ~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l  173 (213)
T cd03259         122 GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL  173 (213)
T ss_pred             hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999964

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=5.3e-21  Score=132.89  Aligned_cols=52  Identities=19%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||+|||+||.+|+.+|+++||||||++||+..+..+.+++
T Consensus       130 ~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l  181 (235)
T COG1122         130 ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL  181 (235)
T ss_pred             hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999999999954

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.82  E-value=2.1e-20  Score=125.30  Aligned_cols=52  Identities=13%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       128 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  179 (214)
T cd03292         128 HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL  179 (214)
T ss_pred             HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999954

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.82  E-value=1.8e-20  Score=126.11  Aligned_cols=52  Identities=19%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       132 ~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l  183 (218)
T cd03255         132 DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL  183 (218)
T ss_pred             hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999954

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.82  E-value=1.6e-20  Score=136.02  Aligned_cols=52  Identities=21%  Similarity=0.243  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus       132 ~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL  183 (343)
T TIGR02314       132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL  183 (343)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.82  E-value=2.1e-20  Score=132.25  Aligned_cols=52  Identities=15%  Similarity=0.319  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+||+||+++|+++||||||+|||+..+..+++++
T Consensus       116 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  167 (302)
T TIGR01188       116 EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI  167 (302)
T ss_pred             hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.82  E-value=1.2e-20  Score=133.78  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=55.3

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCC
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPG   73 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g   73 (79)
                      ++++++||.+|||||+|||.+||||+.+|++++||||+++|||.++..+-+.+.    ..+.+..+++|+
T Consensus       126 ~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD  195 (309)
T COG1125         126 SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD  195 (309)
T ss_pred             HHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC
Confidence            369999999999999999999999999999999999999999999998887532    233444444443

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.82  E-value=2.3e-20  Score=132.72  Aligned_cols=64  Identities=19%  Similarity=0.357  Sum_probs=54.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      +..++++++|||||+||++||+||+++|+++||||||+|||+..+..++++      +..+.++|.|+++
T Consensus       130 ~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~------l~~l~~~g~till  193 (306)
T PRK13537        130 NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER------LRSLLARGKTILL  193 (306)
T ss_pred             hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH------HHHHHhCCCEEEE
Confidence            456889999999999999999999999999999999999999999999995      4444444555543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.82  E-value=2.2e-20  Score=127.25  Aligned_cols=52  Identities=12%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       128 ~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l  179 (235)
T cd03261         128 GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI  179 (235)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999954

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.9e-20  Score=134.74  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=57.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCcee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIGL   76 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~~   76 (79)
                      ...+.||.+|||||+|||.||.|++.+|++||.||||++||...+.++++++.    +.+....+.+|+.++
T Consensus       145 ~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v  216 (316)
T COG0444         145 RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV  216 (316)
T ss_pred             HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            47899999999999999999999999999999999999999999999999653    234444445555443

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.82  E-value=3.5e-20  Score=124.95  Aligned_cols=52  Identities=15%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       133 ~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l  184 (221)
T TIGR02211       133 HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM  184 (221)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999954

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.82  E-value=3.3e-20  Score=131.34  Aligned_cols=52  Identities=19%  Similarity=0.336  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus       127 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  178 (303)
T TIGR01288       127 SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL  178 (303)
T ss_pred             hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.82  E-value=3.7e-20  Score=125.07  Aligned_cols=52  Identities=21%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++++
T Consensus       123 ~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l  174 (220)
T cd03293         123 GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL  174 (220)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999964

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=4e-20  Score=132.68  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...++++.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus       145 ~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL  196 (326)
T PRK11022        145 SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL  196 (326)
T ss_pred             HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999964

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.82  E-value=4.8e-20  Score=123.53  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       127 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l  178 (213)
T cd03262         127 DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM  178 (213)
T ss_pred             hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999953

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=4.8e-20  Score=129.67  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus       137 ~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l  188 (287)
T PRK13641        137 DLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF  188 (287)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999953

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.81  E-value=4.4e-20  Score=125.66  Aligned_cols=52  Identities=13%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+++++
T Consensus       136 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  187 (241)
T cd03256         136 DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL  187 (241)
T ss_pred             hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999954

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.81  E-value=3.5e-20  Score=124.14  Aligned_cols=52  Identities=33%  Similarity=0.284  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++
T Consensus       118 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  169 (208)
T cd03268         118 DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI  169 (208)
T ss_pred             HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999854

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=4.3e-20  Score=132.50  Aligned_cols=52  Identities=12%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||+|||+|||||+.+|++||+||||++||+..+..+.+++.
T Consensus       151 ~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~  202 (330)
T PRK15093        151 AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLT  202 (330)
T ss_pred             HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999999999999999643

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=3.7e-20  Score=134.41  Aligned_cols=52  Identities=15%  Similarity=0.342  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       126 ~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l  177 (356)
T PRK11650        126 PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI  177 (356)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999854

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.81  E-value=4.1e-20  Score=124.42  Aligned_cols=52  Identities=17%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       128 ~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l  179 (218)
T cd03266         128 ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI  179 (218)
T ss_pred             HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.81  E-value=4.5e-20  Score=132.82  Aligned_cols=52  Identities=13%  Similarity=0.222  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+++|.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus       153 ~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL  204 (331)
T PRK15079        153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL  204 (331)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999954

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.81  E-value=2.1e-20  Score=131.06  Aligned_cols=65  Identities=12%  Similarity=0.143  Sum_probs=54.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCC
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPG   73 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g   73 (79)
                      ..++.+|.+|||||++|++||||++.+|+++++||||+||||.....+-+++.    +-+.+..+.+|+
T Consensus       137 ~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD  205 (263)
T COG1127         137 AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD  205 (263)
T ss_pred             hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC
Confidence            34789999999999999999999999999999999999999999998888643    234444445554

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.81  E-value=5.2e-20  Score=123.53  Aligned_cols=52  Identities=17%  Similarity=0.382  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       122 ~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  173 (213)
T cd03301         122 HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL  173 (213)
T ss_pred             HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999954

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.81  E-value=5.2e-20  Score=124.38  Aligned_cols=52  Identities=17%  Similarity=0.332  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       123 ~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (220)
T cd03265         123 EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI  174 (220)
T ss_pred             HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=2.5e-20  Score=126.20  Aligned_cols=64  Identities=17%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             chhHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCce
Q psy1505           6 KKKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIG   75 (79)
Q Consensus         6 ~~~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~   75 (79)
                      .=++++|++|-.|||||+|||+|||||++.|+++++||||++|||+...++.++      +..+...|+|
T Consensus       130 rl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~i------ikel~~tgit  193 (242)
T COG4161         130 RLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI------IKELAETGIT  193 (242)
T ss_pred             ccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHH------HHHHHhcCce
Confidence            337899999999999999999999999999999999999999999999999994      4555444544

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.81  E-value=4.9e-20  Score=125.28  Aligned_cols=51  Identities=18%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++++
T Consensus       136 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  186 (236)
T cd03219         136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI  186 (236)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999954

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=6.5e-20  Score=127.48  Aligned_cols=65  Identities=18%  Similarity=0.445  Sum_probs=57.0

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcC-Cceeee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSP-GIGLIF   78 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~-g~~~~~   78 (79)
                      +++.++++++|||||||+++|||||+.+|++++|||||.||-|...++|++      .+..++++ |+||++
T Consensus       127 ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~------~i~~l~~~~g~tIlL  192 (237)
T COG0410         127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE------AIKELRKEGGMTILL  192 (237)
T ss_pred             HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHH------HHHHHHHcCCcEEEE
Confidence            578899999999999999999999999999999999999999999999999      45566543 555553

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.81  E-value=7.4e-20  Score=122.09  Aligned_cols=52  Identities=17%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+||+||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       126 ~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  177 (206)
T TIGR03608       126 LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL  177 (206)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=6.9e-20  Score=131.60  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+++|.+|||||+|||+|||||+.+|++||+||||++||+..+..+++++
T Consensus       146 ~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL  197 (327)
T PRK11308        146 EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM  197 (327)
T ss_pred             HHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999964

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.81  E-value=6.2e-20  Score=123.89  Aligned_cols=52  Identities=17%  Similarity=0.288  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       137 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  188 (228)
T cd03257         137 EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLL  188 (228)
T ss_pred             hHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence            3568889999999999999999999999999999999999999999999954

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.81  E-value=6.5e-20  Score=124.39  Aligned_cols=52  Identities=21%  Similarity=0.304  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus       125 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l  176 (232)
T cd03218         125 HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII  176 (232)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.81  E-value=5e-20  Score=130.79  Aligned_cols=61  Identities=21%  Similarity=0.394  Sum_probs=52.8

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC-ceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG-IGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g-~~~~   77 (79)
                      .++++++||+||||||.||.||+++|+++||||||+||||..+..++++      ++.+.++| .||+
T Consensus       130 ~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~------l~~l~~~g~~tvl  191 (293)
T COG1131         130 ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL------LRELAKEGGVTIL  191 (293)
T ss_pred             hCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHH------HHHHHhCCCcEEE
Confidence            3788999999999999999999999999999999999999999999995      45554443 4544

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=7.7e-20  Score=127.38  Aligned_cols=52  Identities=17%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus       128 ~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l  179 (271)
T PRK13638        128 HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII  179 (271)
T ss_pred             hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.81  E-value=6.9e-20  Score=125.00  Aligned_cols=52  Identities=17%  Similarity=0.358  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus       137 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  188 (243)
T TIGR02315       137 DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL  188 (243)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999954

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=6.9e-20  Score=129.01  Aligned_cols=52  Identities=19%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus       136 ~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l  187 (287)
T PRK13637        136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKI  187 (287)
T ss_pred             hhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999953

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=7.9e-20  Score=127.89  Aligned_cols=52  Identities=19%  Similarity=0.237  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++++
T Consensus       130 ~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l  181 (274)
T PRK13647        130 DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL  181 (274)
T ss_pred             HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999954

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.81  E-value=8.4e-20  Score=122.37  Aligned_cols=52  Identities=12%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       117 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  168 (201)
T cd03231         117 GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM  168 (201)
T ss_pred             hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=7.4e-20  Score=130.32  Aligned_cols=52  Identities=13%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus       157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l  208 (305)
T PRK13651        157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF  208 (305)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999953

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.81  E-value=6.8e-20  Score=132.39  Aligned_cols=52  Identities=19%  Similarity=0.364  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++++|||||+||++||+||+++|+++||||||+|||+..+..+++++
T Consensus       164 ~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l  215 (340)
T PRK13536        164 SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL  215 (340)
T ss_pred             hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999954

>PRK10908 cell division protein FtsE; Provisional

Probab=99.81  E-value=9.1e-20  Score=123.33  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (222)
T PRK10908        129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF  180 (222)
T ss_pred             hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999854

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.81  E-value=8.4e-20  Score=123.75  Aligned_cols=52  Identities=13%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       138 ~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  189 (228)
T PRK10584        138 KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL  189 (228)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999954

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.81  E-value=6.5e-20  Score=125.36  Aligned_cols=52  Identities=19%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       128 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l  179 (239)
T cd03296         128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL  179 (239)
T ss_pred             hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999954

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.81  E-value=7.4e-20  Score=125.44  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       137 ~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  187 (250)
T PRK11264        137 KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI  187 (250)
T ss_pred             hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999853

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.81  E-value=8.1e-20  Score=122.53  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=48.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       120 ~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l  171 (210)
T cd03269         120 EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI  171 (210)
T ss_pred             HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999953

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.81  E-value=8.1e-20  Score=122.98  Aligned_cols=52  Identities=19%  Similarity=0.322  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       123 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (214)
T cd03297         123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL  174 (214)
T ss_pred             hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999954

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=7.5e-20  Score=124.66  Aligned_cols=52  Identities=15%  Similarity=0.314  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       137 ~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  188 (233)
T PRK11629        137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL  188 (233)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999954

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.81  E-value=8e-20  Score=123.09  Aligned_cols=52  Identities=19%  Similarity=0.390  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+
T Consensus       124 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  175 (222)
T cd03224         124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI  175 (222)
T ss_pred             hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence            3568889999999999999999999999999999999999999999999954

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.81  E-value=1e-19  Score=121.46  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus       119 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  170 (198)
T TIGR01189       119 GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL  170 (198)
T ss_pred             HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.81  E-value=8.4e-20  Score=124.64  Aligned_cols=52  Identities=23%  Similarity=0.322  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus       106 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  157 (230)
T TIGR01184       106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL  157 (230)
T ss_pred             HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999954

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.80  E-value=8.2e-20  Score=131.36  Aligned_cols=51  Identities=16%  Similarity=0.198  Sum_probs=48.1

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++|+||||++||+..+..+++++
T Consensus       154 ~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL  204 (330)
T PRK09473        154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL  204 (330)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999954

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.80  E-value=1.2e-19  Score=119.81  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus        89 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l  140 (180)
T cd03214          89 HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL  140 (180)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999954

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=6.6e-20  Score=126.45  Aligned_cols=64  Identities=23%  Similarity=0.385  Sum_probs=56.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      +.+++++.+||||+|+|++|||||+.+|++++||||++|+||.....+-.      ++..+++.|+.|++
T Consensus       131 hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~------iI~~L~~rgiGvLI  194 (243)
T COG1137         131 HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR------IIKHLKDRGIGVLI  194 (243)
T ss_pred             HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHH------HHHHHHhCCceEEE
Confidence            56889999999999999999999999999999999999999999999988      45566666666553

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.1e-19  Score=127.94  Aligned_cols=52  Identities=12%  Similarity=0.138  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+||++|||+|+.+|+++||||||++||+..+..+.+++
T Consensus       136 ~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l  187 (288)
T PRK13643        136 EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF  187 (288)
T ss_pred             hhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999999999953

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=1.2e-19  Score=121.66  Aligned_cols=52  Identities=13%  Similarity=0.185  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       121 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  172 (204)
T PRK13538        121 GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL  172 (204)
T ss_pred             HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.80  E-value=1.2e-19  Score=126.58  Aligned_cols=52  Identities=17%  Similarity=0.277  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus       152 ~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l  203 (269)
T cd03294         152 GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL  203 (269)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999954

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.80  E-value=7.5e-20  Score=133.22  Aligned_cols=52  Identities=23%  Similarity=0.361  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       129 ~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l  180 (362)
T TIGR03258       129 DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI  180 (362)
T ss_pred             chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.1e-19  Score=124.85  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L  196 (255)
T PRK11300        145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI  196 (255)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.5e-19  Score=126.49  Aligned_cols=63  Identities=14%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.      +..+.++|.|++
T Consensus       128 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~------l~~l~~~g~til  190 (274)
T PRK13644        128 KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER------IKKLHEKGKTIV  190 (274)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------HHHHHhCCCEEE
Confidence            467889999999999999999999999999999999999999999999995      344444445544

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.80  E-value=9.6e-20  Score=132.89  Aligned_cols=52  Identities=15%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l  172 (363)
T TIGR01186       121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL  172 (363)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999964

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.80  E-value=1.3e-19  Score=121.54  Aligned_cols=52  Identities=13%  Similarity=0.309  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       120 ~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l  171 (211)
T cd03298         120 GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV  171 (211)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=1.4e-19  Score=121.70  Aligned_cols=52  Identities=17%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++++|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       119 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  170 (207)
T PRK13539        119 PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI  170 (207)
T ss_pred             HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999954

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.3e-19  Score=123.88  Aligned_cols=52  Identities=13%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       133 ~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l  184 (242)
T PRK11124        133 PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII  184 (242)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.4e-19  Score=129.62  Aligned_cols=52  Identities=12%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L  219 (320)
T PRK13631        168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI  219 (320)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999954

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.1e-19  Score=131.07  Aligned_cols=52  Identities=21%  Similarity=0.263  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++++
T Consensus       132 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L  183 (343)
T PRK11153        132 DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL  183 (343)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.80  E-value=1.5e-19  Score=123.42  Aligned_cols=52  Identities=15%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus       128 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l  179 (240)
T PRK09493        128 ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVM  179 (240)
T ss_pred             HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.5e-19  Score=127.45  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       137 ~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L  188 (290)
T PRK13634        137 ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF  188 (290)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999953

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.6e-19  Score=126.63  Aligned_cols=52  Identities=21%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       132 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l  183 (279)
T PRK13650        132 DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI  183 (279)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999953

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.80  E-value=1.4e-19  Score=123.06  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+
T Consensus       132 ~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l  183 (233)
T cd03258         132 DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL  183 (233)
T ss_pred             hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999953

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.6e-19  Score=124.50  Aligned_cols=52  Identities=12%  Similarity=0.179  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       130 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  181 (255)
T PRK11231        130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM  181 (255)
T ss_pred             HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999954

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.80  E-value=1.6e-19  Score=121.13  Aligned_cols=53  Identities=17%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++.
T Consensus       122 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  174 (211)
T cd03264         122 DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS  174 (211)
T ss_pred             HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.80  E-value=1.7e-19  Score=122.87  Aligned_cols=52  Identities=19%  Similarity=0.079  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       134 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l  185 (224)
T cd03220         134 DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL  185 (224)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999854

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.3e-19  Score=131.45  Aligned_cols=52  Identities=15%  Similarity=0.297  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.+
T Consensus       128 ~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  179 (351)
T PRK11432        128 GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI  179 (351)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999854

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.80  E-value=1.5e-19  Score=133.36  Aligned_cols=63  Identities=13%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      ++.++++.+||||||||++|||||+++|+++||||||++||+..+..++++      +..+.++|.|++
T Consensus       131 ~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l------L~~l~~~g~TII  193 (402)
T PRK09536        131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL------VRRLVDDGKTAV  193 (402)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH------HHHHHhcCCEEE
Confidence            567899999999999999999999999999999999999999999999994      444444455544

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.80  E-value=8.6e-20  Score=125.99  Aligned_cols=65  Identities=20%  Similarity=0.389  Sum_probs=58.0

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .+.+|++++++|.||||||+|||||+++|++++|||||+|||...+..+.+      ++..++..|.+++|
T Consensus       124 ~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d------fi~q~k~egr~viF  188 (245)
T COG4555         124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD------FIKQLKNEGRAVIF  188 (245)
T ss_pred             HHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH------HHHHhhcCCcEEEE
Confidence            468899999999999999999999999999999999999999999999999      45666666666665

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.6e-19  Score=123.07  Aligned_cols=52  Identities=15%  Similarity=0.333  Sum_probs=48.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       129 ~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l  180 (237)
T PRK11614        129 ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTI  180 (237)
T ss_pred             HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999954

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.3e-19  Score=131.94  Aligned_cols=52  Identities=19%  Similarity=0.322  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       125 ~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L  176 (369)
T PRK11000        125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI  176 (369)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999998854

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.80  E-value=1.4e-19  Score=131.23  Aligned_cols=52  Identities=23%  Similarity=0.291  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       128 ~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L  179 (353)
T PRK10851        128 HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL  179 (353)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999854

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.8e-19  Score=125.84  Aligned_cols=51  Identities=18%  Similarity=0.146  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       138 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  188 (280)
T PRK13649        138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF  188 (280)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999954

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.79  E-value=1.5e-19  Score=125.89  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       135 ~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  186 (269)
T PRK11831        135 GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI  186 (269)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            4568889999999999999999999999999999999999999999999954

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.79  E-value=1e-19  Score=138.11  Aligned_cols=64  Identities=13%  Similarity=0.218  Sum_probs=53.4

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCce
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIG   75 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~   75 (79)
                      ++||.+||||||||+.||+||+.+|++||+||||++||+..+.+|++++.    +.++...+.+|+.+
T Consensus       149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~  216 (539)
T COG1123         149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG  216 (539)
T ss_pred             ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence            78999999999999999999999999999999999999999999999643    23344444444443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.4e-19  Score=125.06  Aligned_cols=52  Identities=15%  Similarity=0.306  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       134 ~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L  185 (272)
T PRK15056        134 EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL  185 (272)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999954

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.79  E-value=2e-19  Score=122.46  Aligned_cols=50  Identities=16%  Similarity=0.276  Sum_probs=47.3

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+.+
T Consensus       132 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  181 (237)
T cd03252         132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM  181 (237)
T ss_pred             hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999964

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=2.1e-19  Score=125.69  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       129 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  180 (275)
T PRK13639        129 GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL  180 (275)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999953

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.79  E-value=2.6e-19  Score=121.08  Aligned_cols=50  Identities=16%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       143 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  192 (224)
T TIGR02324       143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI  192 (224)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999953

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.79  E-value=2.2e-19  Score=122.06  Aligned_cols=52  Identities=17%  Similarity=0.267  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       105 ~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771       105 ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999954

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.79  E-value=1.9e-19  Score=123.20  Aligned_cols=51  Identities=16%  Similarity=0.287  Sum_probs=48.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       128 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L  178 (242)
T cd03295         128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF  178 (242)
T ss_pred             HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999954

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=2.4e-19  Score=125.91  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus       133 ~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l  184 (283)
T PRK13636        133 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL  184 (283)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999953

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.79  E-value=2.7e-19  Score=121.93  Aligned_cols=51  Identities=16%  Similarity=0.127  Sum_probs=46.6

Q ss_pred             HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++. +|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       136 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  187 (243)
T TIGR01978       136 FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI  187 (243)
T ss_pred             hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence            4566776 59999999999999999999999999999999999999999954

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.79  E-value=9.7e-20  Score=132.22  Aligned_cols=53  Identities=17%  Similarity=0.352  Sum_probs=49.7

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++++|.+|||||||||+|||||+.+|++++||||+++||+..+..+...+
T Consensus       124 ~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei  176 (338)
T COG3839         124 EHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEI  176 (338)
T ss_pred             hhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999887753

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.79  E-value=2.1e-19  Score=133.49  Aligned_cols=52  Identities=17%  Similarity=0.253  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+||+||+.+|+++||||||++||+..+..+.+++
T Consensus       127 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  178 (490)
T PRK10938        127 ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL  178 (490)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999964

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=2.6e-19  Score=125.93  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus       137 ~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l  188 (286)
T PRK13646        137 DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLL  188 (286)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999953

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.5e-19  Score=122.46  Aligned_cols=51  Identities=18%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.
T Consensus       129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  179 (241)
T PRK10895        129 HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI  179 (241)
T ss_pred             HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999999884

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.79  E-value=2.6e-19  Score=122.15  Aligned_cols=51  Identities=16%  Similarity=0.315  Sum_probs=48.1

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       125 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  175 (236)
T TIGR03864       125 RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV  175 (236)
T ss_pred             hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999954

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.79  E-value=2.3e-19  Score=122.19  Aligned_cols=52  Identities=13%  Similarity=0.074  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       117 ~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l  168 (230)
T TIGR02770       117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL  168 (230)
T ss_pred             HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999854

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.79  E-value=2.8e-19  Score=123.56  Aligned_cols=51  Identities=14%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+.....+.+.+
T Consensus       144 ~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  194 (258)
T PRK11701        144 RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL  194 (258)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999953

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=2.6e-19  Score=125.78  Aligned_cols=52  Identities=12%  Similarity=0.157  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       142 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l  193 (289)
T PRK13645        142 DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF  193 (289)
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999853

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.79  E-value=2.8e-19  Score=123.43  Aligned_cols=48  Identities=19%  Similarity=0.258  Sum_probs=46.4

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.
T Consensus       147 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  194 (257)
T PRK10619        147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI  194 (257)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999995

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.4e-19  Score=122.22  Aligned_cols=52  Identities=21%  Similarity=0.267  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       123 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (241)
T PRK14250        123 EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI  174 (241)
T ss_pred             HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999954

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.79  E-value=2.3e-19  Score=128.48  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus        92 ~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l  143 (325)
T TIGR01187        92 EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL  143 (325)
T ss_pred             chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999964

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.79  E-value=2.3e-19  Score=131.27  Aligned_cols=52  Identities=23%  Similarity=0.377  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.+
T Consensus       136 ~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  187 (375)
T PRK09452        136 EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL  187 (375)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999999998854

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=3.1e-19  Score=123.78  Aligned_cols=52  Identities=19%  Similarity=0.278  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       120 ~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L  171 (255)
T PRK11248        120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL  171 (255)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999964

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.79  E-value=2.7e-19  Score=129.40  Aligned_cols=52  Identities=17%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       123 ~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L  174 (354)
T TIGR02142       123 HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL  174 (354)
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=3.4e-19  Score=123.77  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++
T Consensus       139 ~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l  190 (265)
T PRK10575        139 PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV  190 (265)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999998854

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.79  E-value=3.5e-19  Score=119.97  Aligned_cols=52  Identities=15%  Similarity=0.282  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.+.+||+||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       120 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  171 (213)
T TIGR01277       120 DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV  171 (213)
T ss_pred             HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999954

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.79  E-value=3.9e-19  Score=121.60  Aligned_cols=51  Identities=16%  Similarity=0.182  Sum_probs=45.7

Q ss_pred             HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++. +|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       137 ~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l  188 (248)
T PRK09580        137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGV  188 (248)
T ss_pred             hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            3455564 79999999999999999999999999999999999999998853

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.79  E-value=2e-19  Score=130.43  Aligned_cols=52  Identities=25%  Similarity=0.398  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.+
T Consensus       126 ~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  177 (353)
T TIGR03265       126 GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI  177 (353)
T ss_pred             chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999854

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.79  E-value=2.3e-19  Score=134.51  Aligned_cols=51  Identities=14%  Similarity=0.260  Sum_probs=48.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       149 ~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l  199 (529)
T PRK15134        149 RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLL  199 (529)
T ss_pred             HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHH
Confidence            458899999999999999999999999999999999999999999999964

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.9e-19  Score=122.44  Aligned_cols=51  Identities=20%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus       143 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  193 (254)
T PRK14273        143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELI  193 (254)
T ss_pred             HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence            468889999999999999999999999999999999999999999999954

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.7e-19  Score=122.34  Aligned_cols=51  Identities=20%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+++
T Consensus       142 ~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  192 (253)
T PRK14242        142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELI  192 (253)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999964

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=3.4e-19  Score=125.05  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       132 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l  183 (279)
T PRK13635        132 DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV  183 (279)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999953

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.79  E-value=3e-19  Score=122.80  Aligned_cols=52  Identities=13%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++
T Consensus       140 ~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l  191 (253)
T TIGR02323       140 TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL  191 (253)
T ss_pred             hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            3668899999999999999999999999999999999999999999999954

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.79  E-value=3.8e-19  Score=122.08  Aligned_cols=52  Identities=21%  Similarity=0.211  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus       136 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  187 (247)
T TIGR00972       136 DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI  187 (247)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999964

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.79  E-value=3.6e-19  Score=119.10  Aligned_cols=52  Identities=17%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       119 ~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l  170 (200)
T PRK13540        119 HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI  170 (200)
T ss_pred             hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence            3557888999999999999999999999999999999999999999999954

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.79  E-value=3.2e-19  Score=121.02  Aligned_cols=52  Identities=15%  Similarity=0.216  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       123 ~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l  174 (230)
T TIGR03410       123 EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI  174 (230)
T ss_pred             HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.1e-19  Score=134.03  Aligned_cols=51  Identities=10%  Similarity=0.194  Sum_probs=48.1

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+++.+
T Consensus       389 ~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  439 (501)
T PRK11288        389 SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVI  439 (501)
T ss_pred             CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999953

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.79  E-value=2.1e-19  Score=134.14  Aligned_cols=51  Identities=10%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++++|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       402 ~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l  452 (510)
T PRK09700        402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM  452 (510)
T ss_pred             CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999954

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=3.9e-19  Score=121.08  Aligned_cols=52  Identities=15%  Similarity=0.282  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus       121 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l  172 (232)
T PRK10771        121 DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLV  172 (232)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.2e-19  Score=134.11  Aligned_cols=51  Identities=14%  Similarity=0.221  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+++++
T Consensus       398 ~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  448 (506)
T PRK13549        398 SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI  448 (506)
T ss_pred             CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999953

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3.1e-19  Score=129.11  Aligned_cols=52  Identities=17%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++.+
T Consensus       120 ~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L  171 (352)
T PRK11144        120 PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL  171 (352)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999854

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=4.2e-19  Score=124.26  Aligned_cols=52  Identities=15%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.+.+|||||+||++|||||+.+|+++||||||+|||+..+..+++++
T Consensus       129 ~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l  180 (277)
T PRK13652        129 ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL  180 (277)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999954

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=3.9e-19  Score=124.55  Aligned_cols=52  Identities=10%  Similarity=0.168  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus       136 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  187 (280)
T PRK13633        136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI  187 (280)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999953

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3.2e-19  Score=136.56  Aligned_cols=51  Identities=12%  Similarity=0.178  Sum_probs=48.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+.+++
T Consensus       161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll  211 (623)
T PRK10261        161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI  211 (623)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999954

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.78  E-value=3.5e-19  Score=123.26  Aligned_cols=52  Identities=13%  Similarity=0.301  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       144 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  195 (262)
T PRK09984        144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL  195 (262)
T ss_pred             HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.78  E-value=3.8e-19  Score=123.28  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+||+||+.+|+++||||||++||+..+..+.+++
T Consensus       107 ~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l  158 (246)
T cd03237         107 QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI  158 (246)
T ss_pred             HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999998854

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=4.7e-19  Score=121.78  Aligned_cols=51  Identities=24%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       139 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  189 (250)
T PRK14245        139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI  189 (250)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999964

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.78  E-value=2.1e-19  Score=136.46  Aligned_cols=69  Identities=16%  Similarity=0.250  Sum_probs=59.0

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCcee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIGL   76 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~~   76 (79)
                      .+++++||.+||||||||++|||||+.+|+++++||||++||+..+..+.+++.    +.++...+.+|+.++
T Consensus       420 ~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v  492 (539)
T COG1123         420 PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV  492 (539)
T ss_pred             HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence            358999999999999999999999999999999999999999999999999753    335555556666544

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.78  E-value=5.4e-19  Score=119.95  Aligned_cols=52  Identities=15%  Similarity=0.210  Sum_probs=48.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus       135 ~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l  186 (226)
T cd03234         135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL  186 (226)
T ss_pred             hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            3457789999999999999999999999999999999999999999999964

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.78  E-value=4.9e-19  Score=121.49  Aligned_cols=51  Identities=16%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++. +|||||+|||+||||++.+|+++||||||++||+..+..+.+.+
T Consensus       143 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  194 (252)
T CHL00131        143 FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI  194 (252)
T ss_pred             hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4567776 59999999999999999999999999999999999999999954

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.78  E-value=5e-19  Score=122.14  Aligned_cols=52  Identities=12%  Similarity=0.240  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus       129 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (256)
T TIGR03873       129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV  180 (256)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999954

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=4.6e-19  Score=121.65  Aligned_cols=52  Identities=15%  Similarity=0.166  Sum_probs=48.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||+||++||||++.+|++++|||||++||+..+..+.+++.
T Consensus       139 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~  190 (250)
T PRK14247        139 RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL  190 (250)
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999653

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.78  E-value=3.7e-19  Score=120.42  Aligned_cols=52  Identities=27%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|++++|||||+|||+..+..+.+++
T Consensus       116 ~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L  167 (223)
T TIGR03740       116 NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI  167 (223)
T ss_pred             HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999954

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.78  E-value=5.4e-19  Score=119.70  Aligned_cols=51  Identities=22%  Similarity=0.231  Sum_probs=46.5

Q ss_pred             hccC--cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          11 KKKK--KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        11 ~~~~--~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .++.  +.+|||||+||++||||++.+|+++||||||++||+..+..+++.+.
T Consensus       133 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  185 (227)
T cd03260         133 VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA  185 (227)
T ss_pred             HhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            3455  59999999999999999999999999999999999999999999643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.78  E-value=4.7e-19  Score=119.37  Aligned_cols=53  Identities=21%  Similarity=0.330  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..++++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus       125 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  177 (220)
T cd03263         125 DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL  177 (220)
T ss_pred             HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=4.2e-19  Score=129.87  Aligned_cols=51  Identities=18%  Similarity=0.363  Sum_probs=48.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ++.+++|.+|||||+|||+|||||+.+|+++|||||+++||+..+..+.+.
T Consensus       141 ~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~  191 (377)
T PRK11607        141 EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE  191 (377)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999998874

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.78  E-value=3.1e-19  Score=121.99  Aligned_cols=52  Identities=17%  Similarity=0.271  Sum_probs=49.6

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .++.++.|.+|||||||||++||+|+.+-+|++||||+++|||..+.++..+
T Consensus       120 ~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L  171 (231)
T COG3840         120 AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL  171 (231)
T ss_pred             hhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence            4688999999999999999999999999999999999999999999999885

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.78  E-value=4.1e-19  Score=123.36  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       143 ~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l  193 (265)
T TIGR02769       143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL  193 (265)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999854

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3.2e-19  Score=133.16  Aligned_cols=51  Identities=22%  Similarity=0.288  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       138 ~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  188 (510)
T PRK09700        138 DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM  188 (510)
T ss_pred             CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            458899999999999999999999999999999999999999999999953

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.78  E-value=5.6e-19  Score=122.72  Aligned_cols=52  Identities=17%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       135 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L  186 (265)
T PRK10253        135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL  186 (265)
T ss_pred             HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999954

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.78  E-value=4.7e-19  Score=120.97  Aligned_cols=52  Identities=15%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       135 ~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l  186 (242)
T TIGR03411       135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL  186 (242)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH
Confidence            3557889999999999999999999999999999999999999999999954

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=5.3e-19  Score=122.27  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus       147 ~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  197 (258)
T PRK14268        147 RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI  197 (258)
T ss_pred             hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999954

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.78  E-value=5e-19  Score=123.36  Aligned_cols=52  Identities=17%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus       125 ~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L  176 (257)
T PRK11247        125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI  176 (257)
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999998864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.78  E-value=2.6e-19  Score=129.90  Aligned_cols=52  Identities=17%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .++.++||.+|||||||||.|||||+.+|+|++||||+|+|||-.+.++-+.
T Consensus       155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde  206 (386)
T COG4175         155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE  206 (386)
T ss_pred             hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999888775

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.78  E-value=4.8e-19  Score=123.27  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       141 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  192 (267)
T PRK15112        141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM  192 (267)
T ss_pred             HHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3457788999999999999999999999999999999999999999999954

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.78  E-value=5.7e-19  Score=119.30  Aligned_cols=52  Identities=15%  Similarity=0.185  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++.+|||||+||++|||+++.+|++++|||||++||+..+..+.+++
T Consensus       129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (214)
T PRK13543        129 GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI  180 (214)
T ss_pred             hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999954

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=6.2e-19  Score=123.41  Aligned_cols=52  Identities=13%  Similarity=0.181  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       132 ~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l  183 (277)
T PRK13642        132 DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI  183 (277)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999953

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.78  E-value=5.8e-19  Score=121.87  Aligned_cols=51  Identities=14%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       133 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L  183 (254)
T PRK10418        133 VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLL  183 (254)
T ss_pred             hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999853

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.78  E-value=4.1e-19  Score=132.81  Aligned_cols=51  Identities=14%  Similarity=0.207  Sum_probs=48.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       420 ~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l  470 (520)
T TIGR03269       420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI  470 (520)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999964

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=3e-19  Score=128.76  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=49.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.+++||.+|||||||||++||||+.+|++|+||||+++||+..+.++..++
T Consensus       129 ~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wL  180 (345)
T COG1118         129 GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL  180 (345)
T ss_pred             chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999974

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3.3e-19  Score=132.61  Aligned_cols=51  Identities=12%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+++++
T Consensus       384 ~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l  434 (491)
T PRK10982        384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI  434 (491)
T ss_pred             CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHH
Confidence            458899999999999999999999999999999999999999999999954

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.78  E-value=5.7e-19  Score=122.47  Aligned_cols=52  Identities=15%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       112 ~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L  163 (251)
T PRK09544        112 HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI  163 (251)
T ss_pred             HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999854

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.78  E-value=6.4e-19  Score=119.79  Aligned_cols=50  Identities=28%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       131 ~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l  180 (236)
T cd03253         131 VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL  180 (236)
T ss_pred             hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999954

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.78  E-value=5.2e-19  Score=132.27  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  211 (520)
T TIGR03269       160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL  211 (520)
T ss_pred             hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999998853

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.78  E-value=5.2e-19  Score=125.24  Aligned_cols=52  Identities=15%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||+||+++|+++||||||+|||+..+..+++.+
T Consensus       125 ~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l  176 (301)
T TIGR03522       125 PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI  176 (301)
T ss_pred             hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999954

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.78  E-value=6.7e-19  Score=120.59  Aligned_cols=52  Identities=13%  Similarity=0.195  Sum_probs=48.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||+|++.+|+++||||||++||+..+..+.+++
T Consensus       145 ~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  196 (236)
T cd03267         145 ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL  196 (236)
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999964

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=5.7e-19  Score=130.20  Aligned_cols=52  Identities=17%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       156 ~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L  207 (400)
T PRK10070        156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL  207 (400)
T ss_pred             hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999964

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.77  E-value=5.7e-19  Score=135.15  Aligned_cols=52  Identities=13%  Similarity=0.213  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++++
T Consensus       455 ~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll  506 (623)
T PRK10261        455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL  506 (623)
T ss_pred             HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999964

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=9.1e-19  Score=120.42  Aligned_cols=51  Identities=20%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       140 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  190 (251)
T PRK14249        140 NLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELM  190 (251)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999998854

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.77  E-value=7.5e-19  Score=119.73  Aligned_cols=50  Identities=26%  Similarity=0.326  Sum_probs=46.9

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       133 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l  182 (238)
T cd03249         133 VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL  182 (238)
T ss_pred             eccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999954

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.77  E-value=5.2e-19  Score=132.39  Aligned_cols=51  Identities=14%  Similarity=0.369  Sum_probs=48.4

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       133 ~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l  183 (510)
T PRK15439        133 DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI  183 (510)
T ss_pred             cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999954

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=8.1e-19  Score=121.93  Aligned_cols=52  Identities=19%  Similarity=0.194  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++
T Consensus       156 ~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  207 (268)
T PRK14248        156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI  207 (268)
T ss_pred             HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999964

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.77  E-value=4.4e-19  Score=132.31  Aligned_cols=51  Identities=16%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       134 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  184 (501)
T PRK10762        134 SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI  184 (501)
T ss_pred             CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999853

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.77  E-value=4.4e-19  Score=132.29  Aligned_cols=51  Identities=14%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+.+++
T Consensus       388 ~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  438 (501)
T PRK10762        388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLI  438 (501)
T ss_pred             CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999954

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.77  E-value=7.9e-19  Score=118.27  Aligned_cols=48  Identities=25%  Similarity=0.393  Sum_probs=44.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+.
T Consensus       137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  184 (220)
T cd03245         137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR  184 (220)
T ss_pred             CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999999999999653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.77  E-value=8.2e-19  Score=118.79  Aligned_cols=50  Identities=22%  Similarity=0.344  Sum_probs=46.7

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       133 ~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l  182 (229)
T cd03254         133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL  182 (229)
T ss_pred             hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999954

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.77  E-value=8.5e-19  Score=119.22  Aligned_cols=51  Identities=18%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       130 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  180 (225)
T PRK10247        130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII  180 (225)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999853

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.77  E-value=5.5e-19  Score=131.48  Aligned_cols=50  Identities=14%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||||||+||||++.+|+++||||||++||+..+..+++++
T Consensus       397 ~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  446 (500)
T TIGR02633       397 PFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI  446 (500)
T ss_pred             ccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999853

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.77  E-value=9.4e-19  Score=121.32  Aligned_cols=52  Identities=15%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVY------KNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~------~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+      .+|+++||||||++||+..+..+.+++
T Consensus       126 ~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l  183 (258)
T PRK13548        126 HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLA  183 (258)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999      599999999999999999999999853

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1e-18  Score=119.98  Aligned_cols=51  Identities=24%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       139 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  189 (250)
T PRK14240        139 RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI  189 (250)
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999998854

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.77  E-value=8.1e-19  Score=120.72  Aligned_cols=52  Identities=15%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.+.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       138 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  189 (252)
T TIGR03005       138 DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVI  189 (252)
T ss_pred             hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999854

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=8.9e-19  Score=121.91  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+||+||+||++||||++.+|+++||||||+|||+..+..+++.+
T Consensus       134 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L  185 (269)
T PRK13648        134 ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLV  185 (269)
T ss_pred             hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=5.1e-19  Score=132.09  Aligned_cols=51  Identities=20%  Similarity=0.265  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       136 ~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  186 (506)
T PRK13549        136 NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII  186 (506)
T ss_pred             CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            458899999999999999999999999999999999999999999999954

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.77  E-value=2e-19  Score=131.09  Aligned_cols=52  Identities=19%  Similarity=0.375  Sum_probs=49.2

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +++++++|.+|||||+|||+|||||+.+|+++|||||.++||...+.++...
T Consensus       127 ~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~E  178 (352)
T COG3842         127 EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE  178 (352)
T ss_pred             hhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999988775

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.77  E-value=5.4e-19  Score=131.43  Aligned_cols=51  Identities=25%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus       127 ~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  177 (491)
T PRK10982        127 DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII  177 (491)
T ss_pred             CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999953

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.77  E-value=7.1e-19  Score=131.90  Aligned_cols=51  Identities=16%  Similarity=0.293  Sum_probs=48.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+++++
T Consensus       418 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  468 (529)
T PRK15134        418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL  468 (529)
T ss_pred             HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999964

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.77  E-value=6.4e-19  Score=131.15  Aligned_cols=49  Identities=22%  Similarity=0.317  Sum_probs=46.3

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+.+++
T Consensus       136 ~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  184 (500)
T TIGR02633       136 TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII  184 (500)
T ss_pred             cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999953

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=9.9e-19  Score=121.92  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+++.+
T Consensus       134 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l  185 (271)
T PRK13632        134 DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM  185 (271)
T ss_pred             HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999964

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.77  E-value=4.8e-19  Score=132.60  Aligned_cols=51  Identities=12%  Similarity=0.272  Sum_probs=48.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+||||++.+|++|||||||+|||+..+..+.+++
T Consensus       396 ~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l  446 (510)
T PRK15439        396 HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI  446 (510)
T ss_pred             CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999954

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.1e-18  Score=121.78  Aligned_cols=51  Identities=20%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+++
T Consensus       147 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l  197 (269)
T PRK14259        147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETM  197 (269)
T ss_pred             hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999964

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=1e-18  Score=122.63  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus       135 ~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l  186 (282)
T PRK13640        135 DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI  186 (282)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999954

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.77  E-value=1.1e-18  Score=118.20  Aligned_cols=53  Identities=19%  Similarity=0.290  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..+.++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+.+.
T Consensus       142 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  194 (226)
T cd03248         142 TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY  194 (226)
T ss_pred             chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=120.61  Aligned_cols=52  Identities=21%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus       149 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  200 (260)
T PRK10744        149 KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT  200 (260)
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999998643

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=121.28  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       156 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L  206 (267)
T PRK14235        156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI  206 (267)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            457789999999999999999999999999999999999999999999964

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.77  E-value=8.9e-19  Score=118.94  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=47.1

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+||+||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       132 ~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l  181 (234)
T cd03251         132 IGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL  181 (234)
T ss_pred             eccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999964

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.77  E-value=1.2e-18  Score=116.16  Aligned_cols=66  Identities=15%  Similarity=0.143  Sum_probs=54.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g~   74 (79)
                      +..++++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+.   ..+.+..+.+|..
T Consensus       115 ~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  183 (195)
T PRK13541        115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE  183 (195)
T ss_pred             hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            45688899999999999999999999999999999999999999999998643   2334444444433

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.77  E-value=8e-19  Score=128.88  Aligned_cols=52  Identities=25%  Similarity=0.354  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       156 ~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L  207 (382)
T TIGR03415       156 QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDEL  207 (382)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999964

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.77  E-value=1.3e-18  Score=116.21  Aligned_cols=50  Identities=12%  Similarity=0.245  Sum_probs=47.5

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~--p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+||+||+||++||||++.+  |+++||||||++||+.....+.+.+
T Consensus        81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l  132 (176)
T cd03238          81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI  132 (176)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            6789999999999999999999999  9999999999999999999999953

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=119.53  Aligned_cols=52  Identities=19%  Similarity=0.222  Sum_probs=48.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+++++.
T Consensus       141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  192 (252)
T PRK14239        141 RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLL  192 (252)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999643

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.77  E-value=1.2e-18  Score=119.20  Aligned_cols=52  Identities=27%  Similarity=0.394  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|++++|||||+|||+..+..+++.+
T Consensus       121 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  172 (235)
T cd03299         121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL  172 (235)
T ss_pred             hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999953

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.77  E-value=7e-19  Score=131.23  Aligned_cols=51  Identities=22%  Similarity=0.310  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       133 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  183 (501)
T PRK11288        133 DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI  183 (501)
T ss_pred             CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999954

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.77  E-value=1.2e-18  Score=114.51  Aligned_cols=43  Identities=26%  Similarity=0.398  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      |||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l  139 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI  139 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999954

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.3e-18  Score=120.22  Aligned_cols=51  Identities=22%  Similarity=0.210  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+.+
T Consensus       141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  191 (258)
T PRK14241        141 RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI  191 (258)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999998854

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.77  E-value=1.2e-18  Score=117.86  Aligned_cols=52  Identities=19%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+||+||+||++|||+++.+|+++||||||++||+..+..+.+.+
T Consensus       133 ~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l  184 (220)
T TIGR02982       133 DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM  184 (220)
T ss_pred             hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999853

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=119.81  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  192 (253)
T PRK14267        142 RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL  192 (253)
T ss_pred             hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999964

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.5e-18  Score=121.38  Aligned_cols=53  Identities=28%  Similarity=0.388  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++.
T Consensus       153 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~  205 (274)
T PRK14265        153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL  205 (274)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999653

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.76  E-value=1.4e-18  Score=116.51  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=44.5

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L  147 (200)
T cd03217         100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI  147 (200)
T ss_pred             hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            445799999999999999999999999999999999999999999953

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.76  E-value=1.6e-18  Score=119.58  Aligned_cols=52  Identities=15%  Similarity=0.208  Sum_probs=47.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYK-------NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~-------~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.       +|+++||||||+|||+..+..+.+++
T Consensus       118 ~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L  176 (248)
T PRK03695        118 DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL  176 (248)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            45688999999999999999999997       67999999999999999999999953

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.76  E-value=1.6e-18  Score=113.36  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+||+||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus        81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l  125 (163)
T cd03216          81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI  125 (163)
T ss_pred             EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            349999999999999999999999999999999999999999954

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.7e-18  Score=118.83  Aligned_cols=51  Identities=22%  Similarity=0.236  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  191 (252)
T PRK14272        141 RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM  191 (252)
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999954

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.8e-18  Score=118.74  Aligned_cols=51  Identities=25%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       135 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l  185 (246)
T PRK14269        135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL  185 (246)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            357788999999999999999999999999999999999999999999964

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.76  E-value=1.8e-18  Score=118.35  Aligned_cols=51  Identities=12%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||+++.+|  +++||||||++||+..+..+.+.+
T Consensus       130 ~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l  182 (226)
T cd03270         130 TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETL  182 (226)
T ss_pred             cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            468899999999999999999999998  599999999999999999999954

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.9e-18  Score=118.79  Aligned_cols=51  Identities=18%  Similarity=0.189  Sum_probs=48.1

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus       141 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  191 (252)
T PRK14255        141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML  191 (252)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999964

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.76  E-value=1.4e-18  Score=116.75  Aligned_cols=50  Identities=10%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+||+||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  161 (202)
T cd03233         112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI  161 (202)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999954

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.1e-18  Score=118.32  Aligned_cols=52  Identities=21%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       137 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l  188 (249)
T PRK14253        137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM  188 (249)
T ss_pred             HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999954

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.7e-18  Score=119.01  Aligned_cols=50  Identities=20%  Similarity=0.178  Sum_probs=46.9

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       143 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  192 (251)
T PRK14244        143 LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI  192 (251)
T ss_pred             hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999998854

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.76  E-value=1.9e-18  Score=113.56  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      |||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l  138 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL  138 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999954

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.76  E-value=6.9e-19  Score=131.06  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=50.4

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +...+.||.+|||||||||.||+||+++|+++|.||||++||...+.++++++
T Consensus       148 ~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll  200 (534)
T COG4172         148 EKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLL  200 (534)
T ss_pred             hhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999964

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.76  E-value=9e-19  Score=123.82  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=57.7

Q ss_pred             hhHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh----hcCcchhhhcCCce
Q psy1505           7 KKKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI----SGGIIPMINSPGIG   75 (79)
Q Consensus         7 ~~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~----~~~~~~~l~~~g~~   75 (79)
                      .++.++++|.+|||||+||+.|||||+.+|+++++|||+++||...+.++.+++.    +.++...+.+|+.+
T Consensus        99 ~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~  171 (268)
T COG4608          99 PEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS  171 (268)
T ss_pred             CHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence            4678999999999999999999999999999999999999999999999999653    22444444455443

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2e-18  Score=119.27  Aligned_cols=51  Identities=24%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+|||||+||++|||+++.+|+++||||||+|||+..+..+.+.+
T Consensus       148 ~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  198 (259)
T PRK14274        148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI  198 (259)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999854

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.4e-18  Score=119.60  Aligned_cols=51  Identities=24%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       144 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L  194 (264)
T PRK14243        144 KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM  194 (264)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999954

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.76  E-value=1.9e-18  Score=117.79  Aligned_cols=52  Identities=21%  Similarity=0.378  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.+.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       122 ~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l  173 (232)
T cd03300         122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL  173 (232)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.76  E-value=2.2e-18  Score=120.15  Aligned_cols=51  Identities=12%  Similarity=0.168  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       144 ~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l  194 (268)
T PRK10419        144 VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLL  194 (268)
T ss_pred             HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999853

>PRK13409 putative ATPase RIL; Provisional

Probab=99.76  E-value=1.9e-18  Score=132.21  Aligned_cols=52  Identities=21%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       445 ~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l  496 (590)
T PRK13409        445 RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI  496 (590)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999954

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.76  E-value=1.9e-18  Score=114.27  Aligned_cols=43  Identities=12%  Similarity=0.266  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ||+||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l  147 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI  147 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999954

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.6e-18  Score=119.96  Aligned_cols=51  Identities=20%  Similarity=0.189  Sum_probs=48.1

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+
T Consensus       160 ~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l  210 (271)
T PRK14238        160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELV  210 (271)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999954

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.8e-18  Score=118.01  Aligned_cols=52  Identities=23%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.+.
T Consensus       140 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~  191 (251)
T PRK14270        140 DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV  191 (251)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999998643

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.75  E-value=2.6e-18  Score=120.24  Aligned_cols=52  Identities=19%  Similarity=0.203  Sum_probs=48.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++.+||+||+||++||+|++.+|+++||||||+|||+..+..+.+.+
T Consensus       135 ~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L  186 (264)
T PRK13546        135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI  186 (264)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999853

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.75  E-value=2.8e-18  Score=115.74  Aligned_cols=47  Identities=30%  Similarity=0.608  Sum_probs=44.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +.++.+|||||+||++||||++.+|+++||||||++||+..+..+++
T Consensus       135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  181 (218)
T cd03290         135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ  181 (218)
T ss_pred             ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence            56789999999999999999999999999999999999999998877

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.8e-18  Score=120.83  Aligned_cols=52  Identities=17%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+.+.+.
T Consensus       173 ~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~  224 (285)
T PRK14254        173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE  224 (285)
T ss_pred             HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999988653

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.6e-18  Score=118.01  Aligned_cols=52  Identities=19%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus       140 ~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  191 (251)
T PRK14251        140 NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM  191 (251)
T ss_pred             HhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999643

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.7e-18  Score=120.87  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+.+.
T Consensus       174 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~  226 (286)
T PRK14275        174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQ  226 (286)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999643

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.8e-18  Score=117.77  Aligned_cols=51  Identities=22%  Similarity=0.245  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       139 ~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l  189 (250)
T PRK14262        139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLL  189 (250)
T ss_pred             HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999964

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.9e-18  Score=118.69  Aligned_cols=52  Identities=23%  Similarity=0.198  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       142 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  193 (259)
T PRK14260        142 DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELI  193 (259)
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999954

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=2.9e-18  Score=117.96  Aligned_cols=51  Identities=20%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+..+.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       141 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l  191 (252)
T PRK14256        141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI  191 (252)
T ss_pred             HhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999998854

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=3.4e-18  Score=117.34  Aligned_cols=51  Identities=20%  Similarity=0.210  Sum_probs=47.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       139 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l  189 (250)
T PRK14266        139 KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLI  189 (250)
T ss_pred             HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999954

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.75  E-value=3.5e-18  Score=114.55  Aligned_cols=51  Identities=14%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+.++.+|||||+||++||||++.+|+++||||||++||+..+..+.+++.
T Consensus       119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  169 (207)
T cd03369         119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIR  169 (207)
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999998643

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.75  E-value=3.1e-18  Score=112.83  Aligned_cols=46  Identities=20%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.+||+||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l  141 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI  141 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999954

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=3.3e-18  Score=118.62  Aligned_cols=51  Identities=18%  Similarity=0.153  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++|||+++.+|+++||||||++||+..+..+.+.+
T Consensus       143 ~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l  193 (261)
T PRK14258        143 KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI  193 (261)
T ss_pred             HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999854

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.75  E-value=3.5e-18  Score=114.31  Aligned_cols=49  Identities=51%  Similarity=0.819  Sum_probs=45.5

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .+.++.+||+||+||++||||++.+|+++||||||++||+..+..+++.
T Consensus       121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~  169 (204)
T cd03250         121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN  169 (204)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999988874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.75  E-value=1.8e-18  Score=128.52  Aligned_cols=52  Identities=17%  Similarity=0.164  Sum_probs=49.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||||||+||||++.+|+++||||||+|||+..+..+.+++.
T Consensus       394 ~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~  445 (490)
T PRK10938        394 TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVD  445 (490)
T ss_pred             hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999999999999999653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.75  E-value=3.3e-18  Score=119.35  Aligned_cols=51  Identities=22%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       161 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L  211 (272)
T PRK14236        161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELI  211 (272)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999864

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.75  E-value=2.9e-18  Score=112.43  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG   73 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g   73 (79)
                      ++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.+.+.+..+.+|.
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~  147 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR  147 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCC
Confidence            578999999999999999999999999999999999999999999765434344444554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.75  E-value=3.5e-18  Score=114.26  Aligned_cols=44  Identities=16%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +|||||+||++||||++.+|+++||||||++||+..+..+.+.+
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l  154 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL  154 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999954

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.75  E-value=3.5e-18  Score=116.93  Aligned_cols=52  Identities=19%  Similarity=0.269  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.+.+||+||+||++|||+++.+|++++|||||+|||+..+..+.+.+
T Consensus       122 ~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l  173 (237)
T TIGR00968       122 GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL  173 (237)
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            4568889999999999999999999999999999999999999999999954

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.75  E-value=2.2e-18  Score=117.19  Aligned_cols=51  Identities=14%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +..++||++||||++|||+||||++..|++++.||||.+||......+.++
T Consensus       138 ~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL  188 (228)
T COG4181         138 KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL  188 (228)
T ss_pred             cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999996

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=3.8e-18  Score=117.45  Aligned_cols=50  Identities=18%  Similarity=0.198  Sum_probs=47.5

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       143 ~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l  192 (253)
T PRK14261        143 LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLI  192 (253)
T ss_pred             hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999998864

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.75  E-value=4.1e-18  Score=114.85  Aligned_cols=50  Identities=16%  Similarity=0.267  Sum_probs=47.0

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +.++.+||+||+||++||||++.+|+++||||||++||+..+..+.+.+.
T Consensus       134 ~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~  183 (221)
T cd03244         134 EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR  183 (221)
T ss_pred             ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.75  E-value=3.8e-18  Score=113.80  Aligned_cols=44  Identities=18%  Similarity=0.235  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +|||||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l  151 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFL  151 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999954

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.74  E-value=5.3e-18  Score=118.04  Aligned_cols=51  Identities=27%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||||++.+|+++||||||+|||+..+..+.+++
T Consensus       156 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l  206 (267)
T PRK14237        156 DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM  206 (267)
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999954

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.74  E-value=4.2e-18  Score=112.31  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      |||||+||++||||++.+|++++|||||+|||+..+..+.+++
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l  143 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL  143 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999954

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.74  E-value=4.6e-18  Score=119.32  Aligned_cols=52  Identities=13%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+         .+|+++||||||++||+..+..+.+++
T Consensus       137 ~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l  197 (272)
T PRK13547        137 ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV  197 (272)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            3467899999999999999999999         499999999999999999999999954

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=7.9e-18  Score=117.10  Aligned_cols=52  Identities=25%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..+.++.+|||||+||++||||++.+|+++||||||+|||+..+..+++.+.
T Consensus       142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~  193 (261)
T PRK14263        142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV  193 (261)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999643

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.73  E-value=6.9e-18  Score=128.49  Aligned_cols=52  Identities=25%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus       135 ~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL  186 (549)
T PRK13545        135 KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM  186 (549)
T ss_pred             hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999854

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=8.2e-18  Score=121.05  Aligned_cols=51  Identities=22%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+|||||+||++||||++.+|+++||||||++||+.....+.+.+
T Consensus       218 ~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i  268 (329)
T PRK14257        218 DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI  268 (329)
T ss_pred             hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999988854

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=9.4e-18  Score=119.13  Aligned_cols=52  Identities=15%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++++.+|||||+||++|||||+.+|+++||||||+|||+..+..+.+++.
T Consensus       193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~  244 (305)
T PRK14264        193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIE  244 (305)
T ss_pred             HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999653

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.73  E-value=3.7e-18  Score=127.22  Aligned_cols=54  Identities=19%  Similarity=0.301  Sum_probs=50.5

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..-.++||.++|||||||++||||++-+|++++|||||++||-..+.++.+++.
T Consensus       417 p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr  470 (534)
T COG4172         417 PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR  470 (534)
T ss_pred             hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence            456799999999999999999999999999999999999999999999999643

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=9.8e-18  Score=117.54  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=47.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++.+.+|||||+||++|||||+.+|+++||||||++||+..+..+++.+
T Consensus       156 ~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L  206 (276)
T PRK14271        156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI  206 (276)
T ss_pred             HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999854

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.73  E-value=9e-18  Score=117.54  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=56.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---h-cCcchhhhcCCceee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---S-GGIIPMINSPGIGLI   77 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~-~~~~~~l~~~g~~~~   77 (79)
                      ++++.++++||+||+++|+|||||+.+|++|+||||.+|+.+.+..++.+.+.   . .+....+.+|++.++
T Consensus       141 ~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V  213 (250)
T COG0411         141 ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV  213 (250)
T ss_pred             hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence            67899999999999999999999999999999999999999999999999543   1 224444445544433

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.73  E-value=1.1e-17  Score=109.65  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ||+||+||++||||++.+|+++||||||++||+..+..+.+++
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l  139 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL  139 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999964

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=4.5e-18  Score=127.60  Aligned_cols=63  Identities=21%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ++++.+|||||+|||+||+||+.+|+++||||||++||+..+..+.+++.+.+.+..+.+|..
T Consensus       150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~  212 (530)
T PRK15064        150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDR  212 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            567899999999999999999999999999999999999999999997654455555556554

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.72  E-value=1.3e-17  Score=116.37  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.+.+||+||+||++|||+++.+|+++||||||++||+..+..+.+.+
T Consensus       131 ~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l  182 (255)
T cd03236         131 HVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI  182 (255)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999888854

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=1.6e-17  Score=115.40  Aligned_cols=51  Identities=16%  Similarity=0.241  Sum_probs=47.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+||+||+||++||||++.+|++++|||||++||+..+..+.+.+
T Consensus       146 ~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l  196 (257)
T PRK14246        146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI  196 (257)
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999864

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=1.1e-17  Score=125.48  Aligned_cols=66  Identities=17%  Similarity=0.087  Sum_probs=55.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      +..++++.+|||||+||++||||++.+|+++||||||++||+..+..+.+.+.+.+.+..+.+|+.
T Consensus       430 ~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~  495 (530)
T PRK15064        430 DDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDR  495 (530)
T ss_pred             hHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456899999999999999999999999999999999999999999999997654333444455543

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=1.8e-17  Score=114.99  Aligned_cols=51  Identities=22%  Similarity=0.203  Sum_probs=47.7

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++.+.+|||||+||++||||++.+|+++||||||+|||+..+..+.+.+
T Consensus       154 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  204 (265)
T PRK14252        154 RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI  204 (265)
T ss_pred             HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999954

>PRK13409 putative ATPase RIL; Provisional

Probab=99.72  E-value=1.4e-17  Score=127.44  Aligned_cols=52  Identities=17%  Similarity=0.254  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+||+|++.+|+++||||||++||+..+..+.+++
T Consensus       204 ~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i  255 (590)
T PRK13409        204 NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI  255 (590)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999954

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.71  E-value=9.6e-18  Score=126.61  Aligned_cols=59  Identities=15%  Similarity=0.259  Sum_probs=48.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSP   72 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~   72 (79)
                      ....||||||||++||||++.+|+++||||||++||+++...+.+.+.  ..+.+..+.+|
T Consensus       482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItH  542 (588)
T PRK11174        482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH  542 (588)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            345799999999999999999999999999999999999999998553  22344444444

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.71  E-value=1.8e-17  Score=124.54  Aligned_cols=49  Identities=16%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +....+||||||||++||||++.+|+++||||||++||+.....+.+.+
T Consensus       449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l  497 (544)
T TIGR01842       449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI  497 (544)
T ss_pred             CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999998854

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=8e-18  Score=129.34  Aligned_cols=65  Identities=17%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ..++++.+|||||+|||+||++|+.+|++|||||||++||+..+..+.+++...+....+++|+.
T Consensus       142 ~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~  206 (638)
T PRK10636        142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDR  206 (638)
T ss_pred             hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            45889999999999999999999999999999999999999999999887654333444556654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.71  E-value=2.5e-17  Score=110.09  Aligned_cols=43  Identities=21%  Similarity=0.291  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      |||||+||++||||++.+|++++|||||++||+..+..+.+++
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l  114 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI  114 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.71  E-value=2.7e-17  Score=113.86  Aligned_cols=49  Identities=14%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.++.+||+||+||++||||++.+|+++||||||++||+..+..+++.+
T Consensus       151 ~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  199 (257)
T cd03288         151 TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV  199 (257)
T ss_pred             ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            4566899999999999999999999999999999999999999998854

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.71  E-value=2.3e-17  Score=123.26  Aligned_cols=46  Identities=26%  Similarity=0.407  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...||||||||++||||++.+|+++||||||++||++....+.+.+
T Consensus       468 G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l  513 (529)
T TIGR02868       468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL  513 (529)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4569999999999999999999999999999999999999999954

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.71  E-value=1.1e-17  Score=126.41  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=53.9

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      .++++.+|||||||||+||||++.+|+++||||||++||+..+..+.+++.+...+..+.+|..
T Consensus       157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~  220 (556)
T PRK11819        157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDR  220 (556)
T ss_pred             ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4789999999999999999999999999999999999999999999997653333344455543

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=9.5e-18  Score=120.40  Aligned_cols=65  Identities=14%  Similarity=0.338  Sum_probs=55.3

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcC-Cceeee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSP-GIGLIF   78 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~-g~~~~~   78 (79)
                      .+..+++|.+||||++|||+|+|||...|++++||||.++||..-..+++-      ++..+.++ ++.++|
T Consensus       119 ~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp------ylERL~~e~~IPIlY  184 (352)
T COG4148         119 EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP------YLERLRDEINIPILY  184 (352)
T ss_pred             HHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH------HHHHHHHhcCCCEEE
Confidence            467899999999999999999999999999999999999999999999988      44555433 555443

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.70  E-value=1.3e-17  Score=127.95  Aligned_cols=63  Identities=16%  Similarity=0.025  Sum_probs=53.6

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+.+++..-.....+++|+.
T Consensus       151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~  213 (635)
T PRK11147        151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDR  213 (635)
T ss_pred             CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            688999999999999999999999999999999999999999999997653333444555553

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.70  E-value=3.8e-17  Score=114.98  Aligned_cols=51  Identities=22%  Similarity=0.338  Sum_probs=47.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~---p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||++||++|+.+   |+++||||||+|||+..+..+.+.+
T Consensus       162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L  215 (261)
T cd03271         162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVL  215 (261)
T ss_pred             hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence            36889999999999999999999996   7999999999999999999999954

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.70  E-value=1.7e-17  Score=127.79  Aligned_cols=61  Identities=21%  Similarity=0.279  Sum_probs=51.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ....||||||||++||||++.+|+++||||||++||+.....+.+.+...+.+..+.+|..
T Consensus       612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl  672 (710)
T TIGR03796       612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRL  672 (710)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCH
Confidence            3467999999999999999999999999999999999999999997665555555555543

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.1e-17  Score=115.59  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++.++++.+||||||||+.|||||+.+|++++||||+++||.-.++.+-+++
T Consensus       123 ~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelL  175 (259)
T COG4525         123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL  175 (259)
T ss_pred             ccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHH
Confidence            46779999999999999999999999999999999999999999999888864

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.70  E-value=1.6e-17  Score=129.58  Aligned_cols=62  Identities=18%  Similarity=0.265  Sum_probs=51.9

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCc
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGI   74 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~   74 (79)
                      .....||||||||++||||++++|+++||||||++||+.....+.+.+.  ..+.+..+.+|..
T Consensus       605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl  668 (709)
T COG2274         605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL  668 (709)
T ss_pred             cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence            4456899999999999999999999999999999999999999999765  3345555555543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.70  E-value=1.5e-17  Score=125.54  Aligned_cols=64  Identities=13%  Similarity=0.093  Sum_probs=54.0

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      .++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++.+.+.+..+.+|+.
T Consensus       155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~  218 (552)
T TIGR03719       155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDR  218 (552)
T ss_pred             ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4788999999999999999999999999999999999999999999997654333444455543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.70  E-value=3e-17  Score=123.91  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=54.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ..++++.+|||||+|||+||||++.+|+++||||||++||+..+..+.+++.+..-+..+.+|+.
T Consensus       436 ~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~  500 (552)
T TIGR03719       436 DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDR  500 (552)
T ss_pred             HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            45789999999999999999999999999999999999999999999997654222334455543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.70  E-value=2.9e-17  Score=126.95  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=45.4

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.+||||||||++||++|+.+|++++|||||+|||+..+..+.+.+
T Consensus       201 ~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L  249 (659)
T PLN03211        201 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL  249 (659)
T ss_pred             CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHH
Confidence            3457789999999999999999999999999999999999999999953

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.2e-17  Score=126.92  Aligned_cols=65  Identities=20%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ..++++++|||||+|||+||++++.+|+++||||||++||+..+..+.+.+.+-+-+..+++|+.
T Consensus       423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~  487 (638)
T PRK10636        423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDR  487 (638)
T ss_pred             HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            56789999999999999999999999999999999999999999999997653322444556554

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.69  E-value=4.3e-17  Score=123.28  Aligned_cols=65  Identities=20%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ..++++.+|||||+|||+||||++.+|+++||||||+|||+..+..+.+++.+..-...+.+|+.
T Consensus       438 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~  502 (556)
T PRK11819        438 DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDR  502 (556)
T ss_pred             HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence            45889999999999999999999999999999999999999999999997653211234455543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.69  E-value=5.2e-17  Score=137.02  Aligned_cols=52  Identities=17%  Similarity=0.202  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.+++++++|||||||||+||+||+.+|++++|||||+|||+..++.+++.+
T Consensus      2062 ~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL 2113 (2272)
T TIGR01257      2062 LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113 (2272)
T ss_pred             HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.69  E-value=3.5e-17  Score=125.77  Aligned_cols=60  Identities=17%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG   73 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g   73 (79)
                      ....||||||||++||||++.+|+++||||||++||+.+...+.+.+...+.+..+.+|.
T Consensus       585 ~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr  644 (686)
T TIGR03797       585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHR  644 (686)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecC
Confidence            346799999999999999999999999999999999999999998765434444444553

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.69  E-value=3.1e-17  Score=125.79  Aligned_cols=66  Identities=20%  Similarity=0.143  Sum_probs=55.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      +..++++++|||||||||+||++++.+|++|||||||++||+..+..+.+.+...+.+..+++|+.
T Consensus       432 ~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~  497 (635)
T PRK11147        432 KRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR  497 (635)
T ss_pred             HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence            356889999999999999999999999999999999999999999999887654333445556654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.69  E-value=3.8e-17  Score=123.14  Aligned_cols=59  Identities=14%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG   73 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g   73 (79)
                      ..+||||||||++||||++.+|+++||||||++||+.+...+++.+.+  .+.+..+.+|.
T Consensus       478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr  538 (582)
T PRK11176        478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR  538 (582)
T ss_pred             CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            356999999999999999999999999999999999999999986542  33444444443

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.68  E-value=8.9e-17  Score=113.33  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             HHhccCcCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKK-----------KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~-----------LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ++.+++|..           |||||+||++||||++.+|+++||||||++||+.....+.+.+.
T Consensus       119 ~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~  182 (275)
T cd03289         119 SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK  182 (275)
T ss_pred             HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            455666665           99999999999999999999999999999999999999988643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.68  E-value=8.4e-17  Score=122.27  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=51.1

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      .+.....||||||||++|||||+.+|+++||||||++||+.....+.+.+.  ..+.+..+.+|.
T Consensus       465 ~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~  529 (585)
T TIGR01192       465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHR  529 (585)
T ss_pred             hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence            345567899999999999999999999999999999999999999988653  223444444443

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.68  E-value=3.7e-17  Score=122.67  Aligned_cols=58  Identities=21%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG   73 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g   73 (79)
                      ..||||||||++||||++.+|++++|||||++||+.+...+.+.+.+  .+.+..+.+|.
T Consensus       468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~  527 (571)
T TIGR02203       468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR  527 (571)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence            46999999999999999999999999999999999999999886542  23444444553

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.68  E-value=7.9e-17  Score=120.39  Aligned_cols=60  Identities=17%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG   73 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g   73 (79)
                      ...+||||||||++||||++.+|+++||||||++||+.....+.+.+.+  .+.+..+.+|.
T Consensus       455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~  516 (529)
T TIGR02857       455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHR  516 (529)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            4568999999999999999999999999999999999999999986542  33444444443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.68  E-value=8.8e-17  Score=103.50  Aligned_cols=58  Identities=21%  Similarity=0.184  Sum_probs=47.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcC
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSP   72 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~   72 (79)
                      +.+||+||+||++||||++.+|++++|||||++||+..+..+.+.+.+.+.+..+.+|
T Consensus        68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th  125 (144)
T cd03221          68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSH  125 (144)
T ss_pred             EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEEC
Confidence            3449999999999999999999999999999999999999999975433333333444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.68  E-value=4.8e-17  Score=125.45  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      +.+||||||||++||||++++|+++||||||++||+.....+.+.+.+.+.+..+.+|..
T Consensus       580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~  639 (659)
T TIGR00954       580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRK  639 (659)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCch
Confidence            479999999999999999999999999999999999999999997665455555555543

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.68  E-value=1.1e-16  Score=121.02  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus       469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~  512 (555)
T TIGR01194       469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEE  512 (555)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence            67999999999999999999999999999999999999998774

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03073 ABC transporter F family; Provisional

Probab=99.68  E-value=5.3e-17  Score=126.60  Aligned_cols=66  Identities=18%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      +..++++.+|||||+|||+||++|+.+|+++||||||++||+..+..+.+++...+.+..+.+|+.
T Consensus       336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~  401 (718)
T PLN03073        336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAR  401 (718)
T ss_pred             HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence            346789999999999999999999999999999999999999999999997664444455555554

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.1e-16  Score=112.36  Aligned_cols=53  Identities=17%  Similarity=0.318  Sum_probs=49.8

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++..+||-|||||+-|||||+.+|.++|||||++|||...+..+.+.+
T Consensus       162 ~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l  214 (257)
T COG1119         162 KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL  214 (257)
T ss_pred             hhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999888853

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.67  E-value=1.6e-16  Score=112.41  Aligned_cols=47  Identities=32%  Similarity=0.592  Sum_probs=43.9

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .++.+|||||+||++|||+++.+|+++||||||++||+..+..+.+.
T Consensus       155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~  201 (282)
T cd03291         155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES  201 (282)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999988874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.67  E-value=1.3e-16  Score=120.21  Aligned_cols=46  Identities=26%  Similarity=0.344  Sum_probs=42.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+|||||+||++||||++.+|+++||||||++||++....+.+.+
T Consensus       447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l  492 (547)
T PRK10522        447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL  492 (547)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999887753

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.67  E-value=1.4e-16  Score=120.54  Aligned_cols=49  Identities=29%  Similarity=0.384  Sum_probs=45.0

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ....+||||||||++||||++.+|+++||||||++||+.....+.+.+.
T Consensus       447 ~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~  495 (569)
T PRK10789        447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR  495 (569)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            4456899999999999999999999999999999999999999998653

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.67  E-value=7.5e-17  Score=109.39  Aligned_cols=52  Identities=12%  Similarity=0.058  Sum_probs=48.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+||+||+||++||||++.+|+++|||||++++|+..+..+.+.+
T Consensus        96 ~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l  147 (213)
T PRK15177         96 QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL  147 (213)
T ss_pred             HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999888854

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.67  E-value=8.1e-17  Score=121.86  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=49.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG   73 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g   73 (79)
                      ....|||||+||++||||++++|+++||||||++||+.....+++.+..  .+.+..+.+|.
T Consensus       468 ~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr  529 (588)
T PRK13657        468 RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHR  529 (588)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEec
Confidence            3456999999999999999999999999999999999999999886542  23444444443

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.67  E-value=2.2e-16  Score=101.91  Aligned_cols=44  Identities=25%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +||+||+||++||++++.+|++++|||||++||+..+..+.+.+
T Consensus        80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l  123 (157)
T cd00267          80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL  123 (157)
T ss_pred             eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            39999999999999999999999999999999999999999854

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.67  E-value=9.5e-17  Score=123.51  Aligned_cols=60  Identities=17%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      ....||||||||++||||++.+|+++||||||++||+.....+.+.+.  ..+.+..+.+|.
T Consensus       598 ~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHr  659 (694)
T TIGR03375       598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR  659 (694)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            345799999999999999999999999999999999999999988654  223444444443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.67  E-value=2.7e-16  Score=106.42  Aligned_cols=53  Identities=8%  Similarity=0.040  Sum_probs=47.9

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~----------~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++.++++.+||+||+||++||+|++.          +|+++||||||++||+.....+.+.+
T Consensus       114 ~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l  176 (213)
T cd03279         114 DRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATAL  176 (213)
T ss_pred             HHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            467789999999999999999999985          57899999999999999999998853

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.66  E-value=1.4e-16  Score=120.42  Aligned_cols=62  Identities=19%  Similarity=0.460  Sum_probs=58.3

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .+.++++||.||||.|+||||+..+++++||||||++|+..+.+.+++      +++.+.++|++++|
T Consensus       139 ~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~------~ir~Lk~~Gv~ii~  200 (500)
T COG1129         139 PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD------LIRRLKAQGVAIIY  200 (500)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH------HHHHHHhCCCEEEE
Confidence            688999999999999999999999999999999999999999999999      67888888888876

>PLN03073 ABC transporter F family; Provisional

Probab=99.66  E-value=9.1e-17  Score=125.31  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      ..++++.+|||||+|||+|||+++.+|+++||||||++||+..+..+.+.+...+-+..+.+|+.
T Consensus       620 ~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~  684 (718)
T PLN03073        620 LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDE  684 (718)
T ss_pred             HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCH
Confidence            56789999999999999999999999999999999999999999999886553212344455543

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.66  E-value=1.7e-16  Score=122.28  Aligned_cols=48  Identities=15%  Similarity=0.317  Sum_probs=44.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ....||||||||++||||++.+|+++||||||++||+.....+.+.+.
T Consensus       608 ~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~  655 (708)
T TIGR01193       608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL  655 (708)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            456799999999999999999999999999999999999999988654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.66  E-value=1.7e-16  Score=106.93  Aligned_cols=53  Identities=15%  Similarity=0.041  Sum_probs=47.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..++++.+||+||+||++||++++    .+|++++|||||++||+.....+.+.+.
T Consensus       105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~  161 (197)
T cd03278         105 GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLK  161 (197)
T ss_pred             CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            4568899999999999999999997    4679999999999999999999999643

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.66  E-value=7.8e-17  Score=113.94  Aligned_cols=64  Identities=28%  Similarity=0.409  Sum_probs=58.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      ++..+++.+||.|++|++.+..+++++|+++|||||+|||||.+.+.+-+      .+..++..|.||+|
T Consensus       122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~------~I~~lk~~GatIif  185 (300)
T COG4152         122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD------AIFELKEEGATIIF  185 (300)
T ss_pred             ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHH------HHHHHHhcCCEEEE
Confidence            56788999999999999999999999999999999999999999999999      56777777888776

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.66  E-value=1.5e-16  Score=134.29  Aligned_cols=53  Identities=19%  Similarity=0.307  Sum_probs=49.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..++++.+|||||||||+||+||+.+|+++||||||+|||+..+..+++++.
T Consensus      1053 ~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257      1053 HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999643

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.66  E-value=2.2e-16  Score=121.48  Aligned_cols=52  Identities=17%  Similarity=0.333  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.+.+||+||+||++|||||+.+|+++||||||++||+..++.+.+++
T Consensus       136 ~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll  187 (648)
T PRK10535        136 DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL  187 (648)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999953

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.66  E-value=2.3e-16  Score=119.40  Aligned_cols=48  Identities=15%  Similarity=0.277  Sum_probs=44.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ....|||||+||++||||++.+|+++||||||++||+.+...+.+.+.
T Consensus       473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~  520 (592)
T PRK10790        473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA  520 (592)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999999999988653

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.66  E-value=1.6e-16  Score=121.69  Aligned_cols=62  Identities=11%  Similarity=0.200  Sum_probs=51.4

Q ss_pred             HhccCcC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          10 KKKKKKK------KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        10 ~~~~~~~------~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .+|..++      .|||||||||+||++|+.+|++++|||||+|||+.....+.+.      +..+..+|.|++
T Consensus       153 ~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~------L~~l~~~g~tvi  220 (617)
T TIGR00955       153 CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV------LKGLAQKGKTII  220 (617)
T ss_pred             cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHH------HHHHHhCCCEEE
Confidence            4466666      5999999999999999999999999999999999999999995      444444455544

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.66  E-value=3.9e-16  Score=107.75  Aligned_cols=52  Identities=17%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.++.+||+||+||++||++++    .+|+++++||||++||+..+..+++.+
T Consensus       158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l  213 (251)
T cd03273         158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMI  213 (251)
T ss_pred             HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            4567899999999999999999998    578999999999999999999999954

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.66  E-value=2.6e-16  Score=119.24  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=44.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ....||||||||++||||++.+|+++||||||++||+.+...+.+.+.
T Consensus       472 ~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~  519 (574)
T PRK11160        472 GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA  519 (574)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            456799999999999999999999999999999999999999988653

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.65  E-value=2.8e-16  Score=121.00  Aligned_cols=60  Identities=18%  Similarity=0.255  Sum_probs=49.4

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcC
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSP   72 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~   72 (79)
                      ....+||||||||++||||++.+|+++||||||++||+.+...+.+.+.  ..+.+..+.+|
T Consensus       589 ~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH  650 (694)
T TIGR01846       589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH  650 (694)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            3456899999999999999999999999999999999999999998654  22344444444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.65  E-value=2.5e-16  Score=118.77  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=43.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...||||||||++||||++.+|++++|||||+++|+.+...+.+.+
T Consensus       463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l  508 (567)
T COG1132         463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL  508 (567)
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH
Confidence            3479999999999999999999999999999999999999998864

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.65  E-value=2.5e-16  Score=129.76  Aligned_cols=47  Identities=23%  Similarity=0.293  Sum_probs=43.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ....||||||||++|||||+.+|+||||||||++||++....|.+.+
T Consensus      1355 ~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            34579999999999999999999999999999999999999998854

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.65  E-value=1.6e-16  Score=123.04  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=48.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCC
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPG   73 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g   73 (79)
                      ..+||||||||++||||++.+|+++||||||++||++..+.+.+.....+.+..+.+|.
T Consensus       615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHr  673 (711)
T TIGR00958       615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHR  673 (711)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEecc
Confidence            45799999999999999999999999999999999999998888322334455555554

>KOG0055|consensus

Probab=99.65  E-value=2e-16  Score=128.01  Aligned_cols=46  Identities=26%  Similarity=0.321  Sum_probs=42.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      -.+||||||||++|||||+.+|+||||||||++||++....+.+.+
T Consensus       487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL  532 (1228)
T KOG0055|consen  487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL  532 (1228)
T ss_pred             CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence            3469999999999999999999999999999999999999888853

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.65  E-value=4.4e-16  Score=106.25  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=45.7

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.++.+|||||+||++||||++.    +|+++++||||++||+.....+++.+
T Consensus       152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l  205 (243)
T cd03272         152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI  205 (243)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            568899999999999999999973    58999999999999999999999854

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.64  E-value=3.2e-16  Score=129.14  Aligned_cols=49  Identities=20%  Similarity=0.277  Sum_probs=45.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.+||||||||++|||||+.+|++|||||||++||+.....+.+.+
T Consensus       574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L  622 (1466)
T PTZ00265        574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI  622 (1466)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999998854

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.64  E-value=4e-16  Score=117.33  Aligned_cols=48  Identities=23%  Similarity=0.289  Sum_probs=44.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ....|||||+||++||||++.+|+++||||||++||+...+.+++.+.
T Consensus       473 ~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~  520 (576)
T TIGR02204       473 RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE  520 (576)
T ss_pred             CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence            455799999999999999999999999999999999999999888543

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.64  E-value=4.4e-16  Score=128.40  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             HhccCc-----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKK-----KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~-----~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+|..+     ..|||||||||+||++|+.+|++++|||||+|||+.....+.+.+
T Consensus      1007 ~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L 1062 (1470)
T PLN03140       1007 LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1062 (1470)
T ss_pred             HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            456665     589999999999999999999999999999999999999999953

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.63  E-value=2.3e-16  Score=119.90  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=55.0

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh-cCcchhhhcCCce
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS-GGIIPMINSPGIG   75 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~-~~~~~~l~~~g~~   75 (79)
                      +++.++||||||.||+||++|..+|+++||||||++||......+-+++.. .+ +..+++|++.
T Consensus       148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~  211 (530)
T COG0488         148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRY  211 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence            789999999999999999999999999999999999999999999997752 23 5556677654

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.63  E-value=8.1e-16  Score=103.74  Aligned_cols=52  Identities=13%  Similarity=0.021  Sum_probs=47.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAV----YKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral----~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+||+||+||++||+|+    +.+|+++||||||+++|+..+..+.+++
T Consensus       101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l  156 (198)
T cd03276         101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLL  156 (198)
T ss_pred             cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHH
Confidence            456889999999999999999999    5899999999999999999999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.63  E-value=6.1e-16  Score=126.97  Aligned_cols=52  Identities=13%  Similarity=0.148  Sum_probs=47.0

Q ss_pred             HHhccCcC----CCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKK----KKKKKKKNLLDIFKAVYKNAD-IYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~----~LSgGqrqrl~iaral~~~p~-llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.+|+.++    .|||||||||+||++|+.+|+ +++|||||+|||+.....+.+.+
T Consensus       889 ~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L  945 (1394)
T TIGR00956       889 SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM  945 (1394)
T ss_pred             hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence            34567776    799999999999999999997 99999999999999999999953

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.62  E-value=7.6e-16  Score=122.86  Aligned_cols=61  Identities=11%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++++.+|||||+|||.||++|+.+|  .++||||||+|||+.....++++      +..+.+.|.||+
T Consensus       481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~------L~~L~~~G~TVI  543 (924)
T TIGR00630       481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINT------LKRLRDLGNTVI  543 (924)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHH------HHHHHhCCCEEE
Confidence            58899999999999999999999986  89999999999999999999995      444444454544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.62  E-value=6.7e-16  Score=123.37  Aligned_cols=62  Identities=15%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .++++.+|||||+|||+||++|+.+|  +++||||||+|||+..+..+++.      +..+.+.|.||++
T Consensus       483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~------L~~L~~~G~TVIv  546 (943)
T PRK00349        483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIET------LKHLRDLGNTLIV  546 (943)
T ss_pred             CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHH------HHHHHhCCCEEEE
Confidence            58999999999999999999999997  99999999999999999999994      4445445555543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.62  E-value=6.6e-16  Score=104.84  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      ...++.+.+||||++||++|+|-|..-|+|++|||||++||+.+...+.+++     ...+..+++++++
T Consensus       125 ~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi-----~~~v~~q~vAv~W  189 (223)
T COG4619         125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI-----HRYVREQNVAVLW  189 (223)
T ss_pred             hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHH-----HHHhhhhceEEEE
Confidence            4678899999999999999999999999999999999999999999998852     2233345555543

>KOG0058|consensus

Probab=99.62  E-value=6.1e-16  Score=120.19  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+..+||||||||++|||||+.+|.++||||.|++||.+....+.+.+
T Consensus       600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL  647 (716)
T KOG0058|consen  600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL  647 (716)
T ss_pred             CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence            455689999999999999999999999999999999999888887754

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.61  E-value=9.7e-16  Score=105.79  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+||+||+||++||++++.+    |+++||||||++||+..+..+.+.+
T Consensus       148 ~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i  202 (247)
T cd03275         148 KRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYI  202 (247)
T ss_pred             hhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHH
Confidence            34566799999999999999999864    8999999999999999999998854

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.5e-16  Score=117.13  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .|||||+|||++||||.++++++|+||||++||.++.+.+.+.+.
T Consensus       456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~  500 (559)
T COG4988         456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ  500 (559)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence            499999999999999999999999999999999999999998654

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.60  E-value=1.9e-15  Score=102.21  Aligned_cols=53  Identities=21%  Similarity=0.160  Sum_probs=48.0

Q ss_pred             hHHhccCcCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNL------LDIFKAVYKNADIYLLDDPLSAVDMHVGK-HLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqr------l~iaral~~~p~llllDEPt~~lD~~~~~-~i~~~~   60 (79)
                      +...++++.+||+||+||      ++||++++.+|+++++|||+++||+..+. .+.+++
T Consensus       106 ~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l  165 (204)
T cd03240         106 NWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII  165 (204)
T ss_pred             HHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence            456688999999999996      78999999999999999999999999999 888854

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.60  E-value=9e-16  Score=126.49  Aligned_cols=61  Identities=33%  Similarity=0.659  Sum_probs=50.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh---cCcchhhhcCCc
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS---GGIIPMINSPGI   74 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~---~~~~~~l~~~g~   74 (79)
                      ...+||||||||++||||++.+|+++||||||++||++...++++.+..   .+.+..+.+|..
T Consensus       737 ~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~  800 (1495)
T PLN03232        737 RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL  800 (1495)
T ss_pred             CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECCh
Confidence            3457999999999999999999999999999999999999999876542   344555556543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.60  E-value=1e-15  Score=125.62  Aligned_cols=46  Identities=13%  Similarity=0.122  Sum_probs=43.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .++.|||||||||+||++|+.+|++++|||||+|||+.....+.+.
T Consensus       206 ~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~  251 (1394)
T TIGR00956       206 FVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA  251 (1394)
T ss_pred             cCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence            4567999999999999999999999999999999999999999995

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=2.7e-15  Score=102.16  Aligned_cols=52  Identities=17%  Similarity=0.126  Sum_probs=46.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+||+||+||++||+|++.    +|+++++||||+|||+..+..+.+.+
T Consensus       119 ~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l  174 (212)
T cd03274         119 KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYI  174 (212)
T ss_pred             cccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            44677889999999999999999974    47999999999999999999999953

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.58  E-value=2.6e-15  Score=104.57  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .+++.+.+.+||||++|||.+||.|++      ++++++|||||++||..++..++++
T Consensus       126 ~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l  183 (259)
T COG4559         126 SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL  183 (259)
T ss_pred             hhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH
Confidence            367889999999999999999999976      3468999999999999999999884

>PLN03130 ABC transporter C family member; Provisional

Probab=99.58  E-value=2e-15  Score=125.37  Aligned_cols=62  Identities=34%  Similarity=0.702  Sum_probs=50.7

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh---cCcchhhhcCCc
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS---GGIIPMINSPGI   74 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~---~~~~~~l~~~g~   74 (79)
                      ....+|||||||||+||||++.+|+++||||||++||++....+++.+..   .+.+..+.+|..
T Consensus       736 e~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l  800 (1622)
T PLN03130        736 ERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL  800 (1622)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCH
Confidence            34557999999999999999999999999999999999999988876542   345555555543

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.58  E-value=2.6e-15  Score=123.92  Aligned_cols=64  Identities=45%  Similarity=0.689  Sum_probs=53.0

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh-----cCcchhhhcCCc
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS-----GGIIPMINSPGI   74 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~-----~~~~~~l~~~g~   74 (79)
                      .+.++.+||||||||++||||++.+|++++|||||++||+.....+++.+..     .+.+..+.+|..
T Consensus       754 ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~  822 (1522)
T TIGR00957       754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI  822 (1522)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh
Confidence            3467789999999999999999999999999999999999999999997642     234445555543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.58  E-value=2.5e-15  Score=123.90  Aligned_cols=62  Identities=26%  Similarity=0.522  Sum_probs=51.4

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG   73 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g   73 (79)
                      ...+.+|||||||||+||||++.+|+++||||||++||+.....+++.|.   ..+.+..+.+|+
T Consensus       543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~  607 (1490)
T TIGR01271       543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK  607 (1490)
T ss_pred             cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            45678999999999999999999999999999999999999999998643   224444455554

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.57  E-value=3.6e-15  Score=102.14  Aligned_cols=53  Identities=13%  Similarity=0.242  Sum_probs=49.5

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ....|..|.++||||+||+.|||-|+..|++++|||||.|||...+..+++++
T Consensus       142 ~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDll  194 (258)
T COG4107         142 LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL  194 (258)
T ss_pred             cccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999964

>KOG0055|consensus

Probab=99.57  E-value=2.7e-15  Score=121.55  Aligned_cols=47  Identities=26%  Similarity=0.364  Sum_probs=43.0

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .+..+|||||+||++||||++.||+||||||.|++||.+....+-+-
T Consensus      1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred             cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHH
Confidence            45669999999999999999999999999999999999988877774

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.57  E-value=2.5e-15  Score=113.65  Aligned_cols=63  Identities=10%  Similarity=0.291  Sum_probs=58.4

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      -.+.++.+||||.||+|.|||.|..+|++|||||||.|+|.-...++++      ++..+.++|.++++
T Consensus       394 s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~------li~~lA~~G~ail~  456 (500)
T COG1129         394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR------LIRELAAEGKAILM  456 (500)
T ss_pred             CccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH------HHHHHHHCCCEEEE
Confidence            4568899999999999999999999999999999999999999999999      67888888888875

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.57  E-value=1.3e-15  Score=103.77  Aligned_cols=61  Identities=18%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCcee
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGL   76 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~   76 (79)
                      .-.-.|.++|||++|||.|||+++.+-+|++|||||++||..++.-+.++      +..-++.|.++
T Consensus       145 LW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVvel------i~e~Ka~GaAl  205 (235)
T COG4778         145 LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL------IREAKARGAAL  205 (235)
T ss_pred             HhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHH------HHHHHhcCceE
Confidence            34567899999999999999999999999999999999999999999994      55555555554

>KOG0061|consensus

Probab=99.57  E-value=4.1e-15  Score=114.45  Aligned_cols=63  Identities=14%  Similarity=0.233  Sum_probs=54.9

Q ss_pred             HhccCcC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          10 KKKKKKK-----KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        10 ~~~~~~~-----~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      -+|..++     .+|||||+||+||.-++++|.++++||||+|||+....++.+      .++.+...|.+|+.
T Consensus       158 ~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~------~Lk~lA~~grtVi~  225 (613)
T KOG0061|consen  158 CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ------LLKRLARSGRTVIC  225 (613)
T ss_pred             hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH------HHHHHHhCCCEEEE
Confidence            4566665     599999999999999999999999999999999999999999      56777666777763

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.56  E-value=5.3e-15  Score=111.40  Aligned_cols=62  Identities=26%  Similarity=0.496  Sum_probs=57.1

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .+.++.+||-|+||||+|.+||+.+|++|||||||+-|.|.+.+++++      .+..+.+.|.||+|
T Consensus       134 p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~------~l~~l~~~G~tIi~  195 (501)
T COG3845         134 PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE------ILRRLAAEGKTIIF  195 (501)
T ss_pred             ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH------HHHHHHHCCCEEEE
Confidence            477899999999999999999999999999999999999999999999      57777778888775

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=8.6e-15  Score=111.37  Aligned_cols=62  Identities=15%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcC
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSP   72 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~   72 (79)
                      .+.-...|||||+||++|||+|.++.+++||||||.|||+.+..++++.+-  ..+.+..+.+|
T Consensus       468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTH  531 (573)
T COG4987         468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTH  531 (573)
T ss_pred             hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEec
Confidence            344556899999999999999999999999999999999999999999653  23344444444

>PTZ00243 ABC transporter; Provisional

Probab=99.55  E-value=9.3e-15  Score=121.06  Aligned_cols=51  Identities=43%  Similarity=0.737  Sum_probs=46.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.+|||||||||+||||++.+|+++||||||++||+.....+++.+
T Consensus       775 ~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~  825 (1560)
T PTZ00243        775 EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC  825 (1560)
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            446789999999999999999999999999999999999999998888754

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.55  E-value=1e-14  Score=116.63  Aligned_cols=50  Identities=16%  Similarity=0.278  Sum_probs=47.3

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+||+.||++|+.+|   +++||||||+|||+..+..+++.+
T Consensus       824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L  876 (943)
T PRK00349        824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVL  876 (943)
T ss_pred             ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999   999999999999999999999953

>KOG0057|consensus

Probab=99.55  E-value=8.2e-15  Score=111.68  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .......|||||||||+||||++.+|+|+++||||++||.+...++++.+.
T Consensus       481 VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~  531 (591)
T KOG0057|consen  481 VGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM  531 (591)
T ss_pred             HhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence            445667899999999999999999999999999999999999999999654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.54  E-value=1e-14  Score=121.84  Aligned_cols=61  Identities=13%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++.+.+|||||+|||+||++|..+|  .++||||||+|||+..+..+++.      +..+.+.|.||+
T Consensus       470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~l------L~~L~~~G~TVI  532 (1809)
T PRK00635        470 PERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINV------IKKLRDQGNTVL  532 (1809)
T ss_pred             CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHH------HHHHHhCCCEEE
Confidence            47889999999999999999999999  89999999999999999999994      444444455544

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.54  E-value=1.2e-14  Score=121.34  Aligned_cols=61  Identities=16%  Similarity=0.252  Sum_probs=52.0

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVY---KNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~---~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++++.+|||||+||++||++|+   .+|+++||||||+|||+..+..++++      +..+.+.|.|++
T Consensus       803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~l------L~~L~~~G~TVI  866 (1809)
T PRK00635        803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYV------LQSLTHQGHTVV  866 (1809)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHH------HHHHHhcCCEEE
Confidence            58899999999999999999997   69999999999999999999999995      444444454544

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.54  E-value=1e-14  Score=110.68  Aligned_cols=56  Identities=18%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      ..||||||||+++||||+.+|.+++||||-++||.+....+.+-      +..++.+|.+++
T Consensus       471 ~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A------i~~~k~rG~~vv  526 (580)
T COG4618         471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA------ILAAKARGGTVV  526 (580)
T ss_pred             CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH------HHHHHHcCCEEE
Confidence            57999999999999999999999999999999999999998883      444555544443

>KOG0059|consensus

Probab=99.53  E-value=9.5e-15  Score=115.96  Aligned_cols=52  Identities=21%  Similarity=0.329  Sum_probs=49.9

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .+.++++++.+|||++||+++|.|++.+|++++|||||+|+||..++.++++
T Consensus       689 ~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i  740 (885)
T KOG0059|consen  689 GPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI  740 (885)
T ss_pred             hhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999995

>PLN03232 ABC transporter C family member; Provisional

Probab=99.53  E-value=9.9e-15  Score=120.41  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=43.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ...+||||||||++|||||+.+|+|+||||||++||++....+.+.+.
T Consensus      1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232       1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999999998888654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.53  E-value=1.4e-14  Score=103.74  Aligned_cols=52  Identities=15%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+.++..||-|||.|+.||.+|.++|++++|||||-|||...+..+.+++
T Consensus       148 ~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Fl  199 (325)
T COG4586         148 GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL  199 (325)
T ss_pred             hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999953

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.53  E-value=2.4e-14  Score=114.40  Aligned_cols=51  Identities=20%  Similarity=0.293  Sum_probs=47.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYK---NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~---~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+||+.||++|+.   +|+++||||||+|||+..+..+.+.+
T Consensus       821 ~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L  874 (924)
T TIGR00630       821 KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVL  874 (924)
T ss_pred             hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            3578899999999999999999997   59999999999999999999999953

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.9e-14  Score=98.32  Aligned_cols=54  Identities=13%  Similarity=0.130  Sum_probs=50.1

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .++.|-++++||-|||+||+|||.+++.+++.|||||+++||.+....+..++.
T Consensus       121 ~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~  174 (209)
T COG4133         121 AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMA  174 (209)
T ss_pred             ccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHH
Confidence            357789999999999999999999999999999999999999999998888754

>PLN03130 ABC transporter C family member; Provisional

Probab=99.52  E-value=2.6e-14  Score=118.80  Aligned_cols=47  Identities=19%  Similarity=0.328  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ...||||||||++|||||+.+|+|+||||||++||++....+.+.+.
T Consensus      1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130       1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999998888543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.51  E-value=1.5e-14  Score=110.15  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=55.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCce
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIG   75 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~   75 (79)
                      +...++++.||||||.||.+|+.+..+|.+|||||||+.||......+.+.+..-.=+..+++|+..
T Consensus       431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~  497 (530)
T COG0488         431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRY  497 (530)
T ss_pred             HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4568899999999999999999999999999999999999999999998876533222334566543

>PLN03140 ABC transporter G family member; Provisional

Probab=99.51  E-value=9.3e-15  Score=120.68  Aligned_cols=48  Identities=6%  Similarity=0.066  Sum_probs=45.4

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      |..++.|||||||||+||++++.+|++++|||||+|||+....++.+.
T Consensus       331 ~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~  378 (1470)
T PLN03140        331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC  378 (1470)
T ss_pred             CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHH
Confidence            556789999999999999999999999999999999999999999995

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.50  E-value=2.4e-14  Score=89.76  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=32.2

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS   46 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~   46 (79)
                      +.++.+||+||+|||+||+|++.+|+++||||||+
T Consensus       103 ~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen  103 GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            34449999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.49  E-value=9.8e-14  Score=92.45  Aligned_cols=43  Identities=19%  Similarity=0.167  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ||+||+||++||++++    .+|+++++|||++++|+.....+.+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L  141 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMI  141 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999999999996    689999999999999999999998853

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.49  E-value=5.5e-14  Score=95.88  Aligned_cols=52  Identities=6%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAV----YKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral----~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+..+.+||+||+|++.+++++    +.+|+++++||||++||+..+..+++.+
T Consensus       118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l  173 (213)
T cd03277         118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDML  173 (213)
T ss_pred             CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHH
Confidence            345778999999999998877654    4799999999999999999999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.48  E-value=7.7e-14  Score=115.35  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..||||||||++|||||+.+|+|+||||||+++|++....+.+.+.
T Consensus      1420 ~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957      1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred             CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            4699999999999999999999999999999999999988888653

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0062|consensus

Probab=99.48  E-value=3.9e-14  Score=107.61  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCcee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGL   76 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~   76 (79)
                      .+...++.++||||=|-|+++|||+..+||||||||||+.||..+...+.+.+.....+..+++|+..+
T Consensus       189 ~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~F  257 (582)
T KOG0062|consen  189 PEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNF  257 (582)
T ss_pred             HHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHH
Confidence            467788999999999999999999999999999999999999999999988766555666677776654

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.48  E-value=1.7e-14  Score=99.82  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +..|++..+||||||||.-||+.++++.+.++||||.++||..+...++..
T Consensus       127 ~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~  177 (252)
T COG4604         127 DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKI  177 (252)
T ss_pred             chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999994

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.48  E-value=3.4e-14  Score=95.39  Aligned_cols=52  Identities=13%  Similarity=0.256  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++.|.+||||||.||++-|+|+..|+.++||||++.||...+.++.+++
T Consensus       126 g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV  177 (213)
T COG4136         126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV  177 (213)
T ss_pred             hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999999888874

>PTZ00243 ABC transporter; Provisional

Probab=99.47  E-value=5.4e-14  Score=116.58  Aligned_cols=47  Identities=13%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~-p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..+||||||||++|||||+.+ |+||||||||++||++....+.+.+.
T Consensus      1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243       1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            357999999999999999996 89999999999999999999988653

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.47  E-value=5.5e-14  Score=116.09  Aligned_cols=46  Identities=20%  Similarity=0.238  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..||||||||++|||||+.+|+||||||||++||+.....+.+.+.
T Consensus      1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271      1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred             CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            3699999999999999999999999999999999999999988654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0054|consensus

Probab=99.45  E-value=5.9e-14  Score=115.21  Aligned_cols=64  Identities=44%  Similarity=0.756  Sum_probs=54.9

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh---cCcchhhhcCCce
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS---GGIIPMINSPGIG   75 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~---~~~~~~l~~~g~~   75 (79)
                      ..+.-+||||||||+++|||++++.|+++||.|++++|++..+++++.|+.   .+.++.+++|...
T Consensus       638 GErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~  704 (1381)
T KOG0054|consen  638 GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ  704 (1381)
T ss_pred             cCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh
Confidence            345678999999999999999999999999999999999999999999872   2456666776544

>KOG0927|consensus

Probab=99.44  E-value=1.4e-13  Score=105.12  Aligned_cols=54  Identities=22%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+..++++..||||++.|+++||+|..+|++++|||||++||...+..+-+.+.
T Consensus       212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~  265 (614)
T KOG0927|consen  212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA  265 (614)
T ss_pred             HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999988654

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.42  E-value=4.5e-13  Score=107.90  Aligned_cols=61  Identities=13%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYK--------NADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~--------~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++++.+|||||+++++||+||+.        +|+++|+||||++||+.....+++.      +..+...|.+|+
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~------l~~l~~~g~~v~ 1011 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDA------LDALNASGKTIG 1011 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHH------HHHHHHCCCEEE
Confidence            358899999999999999999995        8999999999999999999999994      444544555544

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.40  E-value=3.7e-13  Score=94.05  Aligned_cols=52  Identities=17%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +...+.+++-|||||||-|+++.|..+.|++++|||-|++|||.....+++.
T Consensus       139 enrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~l  190 (263)
T COG1101         139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL  190 (263)
T ss_pred             hhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999884

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.40  E-value=5.3e-13  Score=93.60  Aligned_cols=47  Identities=9%  Similarity=-0.010  Sum_probs=41.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...+|||||+||+++|++++.    +|+++++|||+++||+.....+.+.+
T Consensus       167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l  217 (276)
T cd03241         167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL  217 (276)
T ss_pred             hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            345599999999999987654    99999999999999999999998864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.39  E-value=1.1e-13  Score=95.79  Aligned_cols=52  Identities=15%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.++..++.||.||+|+++|++.++++|+++++|||++|+...+..+.-+++
T Consensus       139 ~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl  190 (249)
T COG4674         139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL  190 (249)
T ss_pred             hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999988888777754

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.39  E-value=6e-13  Score=99.87  Aligned_cols=51  Identities=16%  Similarity=0.150  Sum_probs=45.3

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHhh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVY----------KNADIYLLDDPL-SAVDMHVGKHLFEDCI   61 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~----------~~p~llllDEPt-~~lD~~~~~~i~~~~~   61 (79)
                      .+.++.+|||||+||++||++++          .+|+++|||||| ++||+.....+.+.+.
T Consensus       462 ~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~  523 (562)
T PHA02562        462 EDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILD  523 (562)
T ss_pred             CccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHH
Confidence            45578999999999999999987          589999999998 7899999999988654

>TIGR00618 sbcc exonuclease SbcC

Probab=99.39  E-value=7.7e-13  Score=106.19  Aligned_cols=51  Identities=10%  Similarity=0.017  Sum_probs=46.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~----------~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+++|+||+||+.          +|+++|+||||++||+.....+++.+
T Consensus       943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l 1003 (1042)
T TIGR00618       943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGIL 1003 (1042)
T ss_pred             CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHH
Confidence            4467899999999999999999985          79999999999999999999998854

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=5e-13  Score=99.99  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      -.||||+||||+|||++..+|++++|||.|++||.+..+.+..-
T Consensus       398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~  441 (497)
T COG5265         398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA  441 (497)
T ss_pred             eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH
Confidence            36999999999999999999999999999999999999998884

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.35  E-value=1.1e-12  Score=90.57  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.++-+|..||.||+|||++||||+-+|+++|.||..++||...+.++.+++
T Consensus       141 dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~  192 (267)
T COG4167         141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM  192 (267)
T ss_pred             cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999964

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.35  E-value=2.5e-12  Score=83.95  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          17 KKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +||+||+|++++++++..    +|+++++|||++|+|+.....+.+.+
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l  124 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAI  124 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            599999999999999987    78999999999999999999888853

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.34  E-value=1.3e-12  Score=98.76  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh----hhcCcchhhhcCCc
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC----ISGGIIPMINSPGI   74 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~----~~~~~~~~l~~~g~   74 (79)
                      ....++++.+||||+.|||+||.||..++++++||||++.||.+.+-.+...+    .+.+.+..+.+|++
T Consensus       446 ~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi  516 (591)
T COG1245         446 EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI  516 (591)
T ss_pred             HHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence            35678999999999999999999999999999999999999999887666632    13334444445543

>PRK03918 chromosome segregation protein; Provisional

Probab=99.33  E-value=2.7e-12  Score=100.51  Aligned_cols=49  Identities=14%  Similarity=0.149  Sum_probs=43.1

Q ss_pred             ccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.++..|||||++      |++||++++.+|+++||||||++||+..+..+.+++
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l  837 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM  837 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHH
Confidence            5688999999999      555666788999999999999999999999998864

>TIGR00606 rad50 rad50

Probab=99.30  E-value=4.6e-12  Score=103.73  Aligned_cols=48  Identities=19%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             ccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        12 ~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ...++.|||||+|      |++||++++.+|++++|||||++||+.....+.+.
T Consensus      1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~ 1247 (1311)
T TIGR00606      1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHA 1247 (1311)
T ss_pred             cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence            3456789999999      99999999999999999999999999999888764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.30  E-value=2.7e-12  Score=99.00  Aligned_cols=52  Identities=13%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS   62 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~   62 (79)
                      .++.-..||+||||||++||.+.++|++++|||-|++||+.....+++++.+
T Consensus       509 ~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~  560 (604)
T COG4178         509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE  560 (604)
T ss_pred             cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence            3445678999999999999999999999999999999999999999998753

>TIGR00634 recN DNA repair protein RecN

Probab=99.30  E-value=5.7e-12  Score=96.01  Aligned_cols=45  Identities=9%  Similarity=0.023  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          16 KKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..|||||+||++||++++..    |+++|||||++|+|+.....+.+.+
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l  487 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKL  487 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            58999999999999999885    6999999999999999999999854

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.29  E-value=4.7e-12  Score=95.88  Aligned_cols=68  Identities=15%  Similarity=0.233  Sum_probs=54.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCCcee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPGIGL   76 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g~~~   76 (79)
                      ...|+.+.+||||+-||++||.++..+.+++++||||+.||...+-.+...++   +.+....+.+|+.++
T Consensus       205 nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav  275 (591)
T COG1245         205 NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV  275 (591)
T ss_pred             hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH
Confidence            56789999999999999999999999999999999999999999888777433   223334444555443

>KOG0927|consensus

Probab=99.28  E-value=1.8e-12  Score=99.10  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..+.+..+||+|||.||.+|++++..|.+++|||||++||......+.+.+-
T Consensus       501 d~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN  553 (614)
T KOG0927|consen  501 DAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN  553 (614)
T ss_pred             cccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh
Confidence            45678899999999999999999999999999999999999999988888653

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.28  E-value=7.9e-12  Score=83.86  Aligned_cols=49  Identities=20%  Similarity=0.188  Sum_probs=43.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +..+....++|+||+|++.+++++ .+|+++++|||++|+|+..+..+..
T Consensus        83 ~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~  131 (200)
T cd03280          83 QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAI  131 (200)
T ss_pred             hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHH
Confidence            456677899999999999999885 8999999999999999999888864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.26  E-value=7.2e-12  Score=98.90  Aligned_cols=53  Identities=17%  Similarity=0.053  Sum_probs=46.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..+.++.+|||||+++++||++++    .+|+++|||||+++||+..+..+.+++.
T Consensus      1081 ~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~ 1137 (1179)
T TIGR02168      1081 GKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLK 1137 (1179)
T ss_pred             CCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHH
Confidence            3457899999999999999999984    5679999999999999999999988653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.25  E-value=2e-12  Score=90.90  Aligned_cols=53  Identities=11%  Similarity=0.144  Sum_probs=51.0

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++....||.+|.-|+-|+|.||.|++.+|+++|.||||+++++..+.+++.++
T Consensus       149 kDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLL  201 (330)
T COG4170         149 KDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLL  201 (330)
T ss_pred             HHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999964

>KOG0062|consensus

Probab=99.24  E-value=6.7e-12  Score=95.58  Aligned_cols=53  Identities=13%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +.+.+...+|||||+-||+||.+...+|.+|+|||||+.||-.....+-.-+.
T Consensus       474 ~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~  526 (582)
T KOG0062|consen  474 ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK  526 (582)
T ss_pred             hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999998887776543

>KOG0065|consensus

Probab=99.22  E-value=2.3e-12  Score=105.38  Aligned_cols=63  Identities=16%  Similarity=0.257  Sum_probs=56.4

Q ss_pred             HHhccCcCC----CCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           9 KKKKKKKKK----KKKKKKNLLDIFKAVYKNA-DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         9 ~~~~~~~~~----LSgGqrqrl~iaral~~~p-~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      +.+|.-++.    ||..||+||.||--|+.+| .||+|||||+|||++....+++      +++.+..+|.||+
T Consensus       917 ~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~------~lrkla~tGqtIl  984 (1391)
T KOG0065|consen  917 EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMR------FLRKLADTGQTIL  984 (1391)
T ss_pred             hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHH------HHHHHHhcCCeEE
Confidence            456777777    9999999999999999999 8888999999999999999999      6788888888876

>KOG0056|consensus

Probab=99.21  E-value=8.2e-12  Score=95.69  Aligned_cols=46  Identities=24%  Similarity=0.339  Sum_probs=41.4

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      .+.-.||||++|||+|||++...|.+++|||.|++||-.....+-.
T Consensus       670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQa  715 (790)
T KOG0056|consen  670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQA  715 (790)
T ss_pred             hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHH
Confidence            3455799999999999999999999999999999999988777766

>PRK10869 recombination and repair protein; Provisional

Probab=99.21  E-value=3.5e-11  Score=91.93  Aligned_cols=46  Identities=7%  Similarity=-0.047  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          16 KKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..|||||+||++||++++.    +|+++|||||++|+|+.....+.+.+.
T Consensus       429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~  478 (553)
T PRK10869        429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLR  478 (553)
T ss_pred             hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            3689999999999999997    589999999999999999999998643

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.18  E-value=4.6e-11  Score=94.72  Aligned_cols=66  Identities=15%  Similarity=0.269  Sum_probs=52.2

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh---hhcCcchhhhcCCcee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC---ISGGIIPMINSPGIGL   76 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~---~~~~~~~~l~~~g~~~   76 (79)
                      ..+++.+||||+.|||.+|.-|....   -++||||||+||-.+..+++++.+   +..|-+..+.+||.-|
T Consensus       816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdV  887 (935)
T COG0178         816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDV  887 (935)
T ss_pred             cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccce
Confidence            56889999999999999999998877   899999999999999888888843   2334444444555444

>PRK01156 chromosome segregation protein; Provisional

Probab=99.18  E-value=5.8e-11  Score=93.83  Aligned_cols=48  Identities=10%  Similarity=0.166  Sum_probs=43.3

Q ss_pred             cCcCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKKKKKKKKNLLDI------FKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~i------aral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++..|||||+++++|      |++++.+|++++|||||++||+.....+.+++
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l  850 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII  850 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHH
Confidence            4688999999999975      59999999999999999999999999888854

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=8.2e-11  Score=82.48  Aligned_cols=64  Identities=19%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             hHHhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           8 KKKKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         8 ~~~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .+++++++. .+|||+|+|.+|+.+++.+|++.|||||=||||....+.+.+      .+..+.+.|.+++
T Consensus       134 ~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~------~i~~lr~~~~~~l  198 (251)
T COG0396         134 EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAE------GINALREEGRGVL  198 (251)
T ss_pred             HHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHH------HHHHHhcCCCeEE
Confidence            467888887 799999999999999999999999999999999999998888      3444555554443

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.16  E-value=5.8e-11  Score=83.09  Aligned_cols=47  Identities=17%  Similarity=0.204  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          15 KKKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..+|+||+|+++||++++         .+|+++++||||++||+..+..+++.+.
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~  236 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIE  236 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhh
Confidence            5568999999999999985         7999999999999999999999999754

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.11  E-value=8.9e-11  Score=93.20  Aligned_cols=52  Identities=12%  Similarity=-0.015  Sum_probs=46.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ....++.+|||||+++++||++++.    .|++++||||+++||+.++..+.+++.
T Consensus      1067 ~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~ 1122 (1164)
T TIGR02169      1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIR 1122 (1164)
T ss_pred             CCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHH
Confidence            3457789999999999999999985    689999999999999999999999654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0060|consensus

Probab=99.10  E-value=1.1e-10  Score=90.00  Aligned_cols=53  Identities=23%  Similarity=0.297  Sum_probs=48.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcc
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGII   66 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~   66 (79)
                      .-..||+||+||+++||.++++|++.+|||-|+++|......+.+.|++.+++
T Consensus       567 W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT  619 (659)
T KOG0060|consen  567 WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGIT  619 (659)
T ss_pred             HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCe
Confidence            44579999999999999999999999999999999999999999988765544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=99.09  E-value=1.4e-10  Score=95.75  Aligned_cols=64  Identities=17%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             hHHhccCcCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhc
Q psy1505           8 KKKKKKKKKKKKKKKKNLLD----IFKA--------VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINS   71 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~----iara--------l~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~   71 (79)
                      .+..++..+.|||||+|+++    +|++        +..+|++++|||||+++|+.+...+++++.+.++..++++
T Consensus      1238 ~~~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s 1313 (1353)
T TIGR02680      1238 WRPLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTS 1313 (1353)
T ss_pred             ccchhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEc
Confidence            34667778999999999996    5655        4479999999999999999999999997654444434333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.09  E-value=9.2e-11  Score=88.73  Aligned_cols=62  Identities=10%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .+.++.+||||.+||+-+||-+..+|+++|+.+||.|||.-..+.+++      .+....+.|.+|++
T Consensus       397 ~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~------~l~e~r~~G~AVLL  458 (501)
T COG3845         397 PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE------RLLELRDAGKAVLL  458 (501)
T ss_pred             CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHH------HHHHHHhcCCEEEE
Confidence            356789999999999999999999999999999999999999999999      56666777777654

>KOG0066|consensus

Probab=99.05  E-value=2.5e-10  Score=87.07  Aligned_cols=50  Identities=20%  Similarity=0.242  Sum_probs=45.2

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .-....|||||+.||++|-.-...|++|||||||++||.+....+.+.+.
T Consensus       699 TikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIn  748 (807)
T KOG0066|consen  699 TIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAIN  748 (807)
T ss_pred             eEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence            34567899999999999999999999999999999999999998888654

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.99  E-value=1.1e-09  Score=77.13  Aligned_cols=66  Identities=18%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh---hhcCcchhhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC---ISGGIIPMINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~---~~~~~~~~l~~~g~   74 (79)
                      ++.|.|+.++|.||+-||+++.|...+|+++|+||-.+..|+..+++=.+.+   .+.+.+..+++|..
T Consensus       139 ~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~  207 (249)
T COG1134         139 DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL  207 (249)
T ss_pred             HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence            6889999999999999999999999999999999999999999887665532   23334445555543

>TIGR00611 recf recF protein

Probab=98.98  E-value=7.9e-10  Score=80.87  Aligned_cols=46  Identities=22%  Similarity=0.119  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          16 KKKKKKKKNLLDIFKAVYK---------NADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~---------~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..+|.||++++.||.+++.         +|+++|||||+++||+..+..+++.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~  328 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQ  328 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHh
Confidence            4789999999999999999         999999999999999999999999764

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00064 recF recombination protein F; Reviewed

Probab=98.97  E-value=8.7e-10  Score=80.31  Aligned_cols=49  Identities=24%  Similarity=0.171  Sum_probs=43.9

Q ss_pred             cCcCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .....+|.||+|++.+|+.++         .+|++++||||+++||+..+..+++.+.
T Consensus       269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~  326 (361)
T PRK00064        269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLK  326 (361)
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHh
Confidence            345689999999999999886         6899999999999999999999998654

>PRK02224 chromosome segregation protein; Provisional

Probab=98.93  E-value=1.5e-09  Score=85.48  Aligned_cols=48  Identities=13%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             cCcCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKKKKKKKKN------LLDIFKAVYKN-----A-DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~LSgGqrq------rl~iaral~~~-----p-~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.+||||+++      |++++++++.+     | +++|+||||+++|+..+..+.+++
T Consensus       777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l  836 (880)
T PRK02224        777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLV  836 (880)
T ss_pred             cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHH
Confidence            357899999999      89999998863     3 679999999999999999998854

>KOG0054|consensus

Probab=98.91  E-value=1.8e-09  Score=89.31  Aligned_cols=50  Identities=16%  Similarity=0.260  Sum_probs=42.9

Q ss_pred             hccCc----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKK----KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~----~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +|..+    .++|-||||.+++||||..+++|++|||.|+++|++.-..+-+.+
T Consensus      1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tI 1318 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 1318 (1381)
T ss_pred             CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHH
Confidence            45444    469999999999999999999999999999999999776666643

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.90  E-value=2.5e-09  Score=71.14  Aligned_cols=49  Identities=14%  Similarity=0.083  Sum_probs=37.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +..+...+++|+|++|...+... +.+|+++|+|||++|+|+.....+..
T Consensus        53 d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~  101 (185)
T smart00534       53 DSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAA  101 (185)
T ss_pred             CchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHH
Confidence            44567788899988874444433 34999999999999999998777644

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.83  E-value=6.3e-09  Score=71.43  Aligned_cols=46  Identities=11%  Similarity=0.059  Sum_probs=39.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDP---LSAVDMHVGKHLF   57 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral--~~~p~llllDEP---t~~lD~~~~~~i~   57 (79)
                      +.....+|.|+++++.+++++  +.+|+++|||||   |+++|+.......
T Consensus        84 d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i  134 (222)
T cd03285          84 DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI  134 (222)
T ss_pred             cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH
Confidence            344678999999999999999  899999999999   8889998775443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.79  E-value=8.4e-10  Score=75.86  Aligned_cols=65  Identities=15%  Similarity=0.351  Sum_probs=51.8

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYK-----NA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~-----~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .++..+...+||||+=|||-+|..+..     ||  +++++|||.++||......+..      ++..+...|.+|++
T Consensus       116 ~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr------ll~~~c~~G~~vim  187 (248)
T COG4138         116 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR------LLSALCQQGLAIVM  187 (248)
T ss_pred             cchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH------HHHHHHhCCcEEEE
Confidence            356778889999999999999987754     34  7999999999999999888887      34555555665554

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.78  E-value=1.6e-08  Score=67.78  Aligned_cols=47  Identities=9%  Similarity=0.015  Sum_probs=36.9

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      .....+.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+..
T Consensus        85 i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~  131 (202)
T cd03243          85 ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY  131 (202)
T ss_pred             ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence            34556778888887 555566778999999999999999998876654

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.78  E-value=2e-08  Score=60.53  Aligned_cols=50  Identities=12%  Similarity=0.129  Sum_probs=37.6

Q ss_pred             hccCcCCCCHHHHHH-HHHHH------HHhc------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNL-LDIFK------AVYK------NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqr-l~iar------al~~------~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+..+.+||||+|. +.++.      .+..      .|++++||||++++|+.....+++++
T Consensus        26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l   88 (90)
T PF13558_consen   26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLL   88 (90)
T ss_dssp             EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred             eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            467889999999953 33333      2223      37999999999999999999999853

>PRK14079 recF recombination protein F; Provisional

Probab=98.77  E-value=1.5e-08  Score=73.68  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          16 KKKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..+|+||++++.+|..|+         .+|++++||||+++||+..+..+.+.+.
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~  316 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAA  316 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHh
Confidence            468999999999999998         8999999999999999999999998653

>KOG0066|consensus

Probab=98.73  E-value=2.2e-09  Score=81.95  Aligned_cols=51  Identities=16%  Similarity=0.281  Sum_probs=46.3

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      ++..+++...+|||-|-||++||||...|-++.|||||+.||....-.+-+
T Consensus       403 kEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdN  453 (807)
T KOG0066|consen  403 KEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDN  453 (807)
T ss_pred             hhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhh
Confidence            567889999999999999999999999999999999999999887665544

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.72  E-value=3.3e-08  Score=78.93  Aligned_cols=49  Identities=16%  Similarity=0.187  Sum_probs=42.0

Q ss_pred             ccCcCCCCHHHHHHHHHHHHH------hcC--CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAV------YKN--ADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral------~~~--p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      -+++.+||||++-.++||-+|      ..+  -++++|||||..||+.....+.+.+
T Consensus       810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l  866 (908)
T COG0419         810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL  866 (908)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHH
Confidence            368899999999987776655      456  7999999999999999999998854

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.68  E-value=1.2e-07  Score=61.34  Aligned_cols=51  Identities=20%  Similarity=0.255  Sum_probs=42.0

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ...+..++|.|++|.+.++..+...+   .++++|||-++|.|..+..+.+++.
T Consensus       230 ~~~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~  283 (303)
T PF13304_consen  230 KEIPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLK  283 (303)
T ss_dssp             EEGGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHH
T ss_pred             eEEeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHH
Confidence            34567788999999999998888876   8999999999999999999998653

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.67  E-value=3.9e-08  Score=65.93  Aligned_cols=39  Identities=10%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHh
Q psy1505          22 KKNLLDIFKAVYKNADIYLLDDPL-----SAVDMHVGKHLFEDC   60 (79)
Q Consensus        22 qrqrl~iaral~~~p~llllDEPt-----~~lD~~~~~~i~~~~   60 (79)
                      +++++.||++++.+|+++++||||     ++||+..+..+.+++
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~  200 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL  200 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence            999999999999999999999999     999999999999954

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.62  E-value=6.3e-08  Score=65.86  Aligned_cols=47  Identities=6%  Similarity=-0.002  Sum_probs=37.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF   57 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~   57 (79)
                      ..++..+++|.|++|.. .+.+++.+|+++++|||+.|+|+.....+.
T Consensus        84 ~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~  130 (204)
T cd03282          84 SMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFAIS  130 (204)
T ss_pred             ccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence            34567788999999764 555578999999999999999998755543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.61  E-value=6e-08  Score=76.93  Aligned_cols=48  Identities=15%  Similarity=0.180  Sum_probs=42.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      -.....+++|+||++++.|++++ .+|+++|+|||++|+|+.....+..
T Consensus       383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~  430 (782)
T PRK00409        383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI  430 (782)
T ss_pred             chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence            34567789999999999999998 8999999999999999998877754

>KOG2355|consensus

Probab=98.60  E-value=3.4e-08  Score=69.39  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      -..+|.|||+||.|++.|.+.=++++|||-|..||...+..+++++     -...-+.|.|+++
T Consensus       145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFl-----keEce~RgatIVY  203 (291)
T KOG2355|consen  145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFL-----KEECEQRGATIVY  203 (291)
T ss_pred             EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHH-----HHHHhhcCcEEEE
Confidence            3568999999999999999988999999999999999999999952     2334455777765

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.60  E-value=1e-07  Score=76.09  Aligned_cols=61  Identities=13%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++.+.+||||+.||+-||.-+-++-  =+++||||+.||=+..-..+.+      .+..+.+.|-|++
T Consensus       475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~------tL~~LRDlGNTvi  537 (935)
T COG0178         475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE------TLKRLRDLGNTVI  537 (935)
T ss_pred             ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH------HHHHHHhcCCeEE
Confidence            47889999999999999999998774  5788999999999998888888      4555666655554

>KOG0064|consensus

Probab=98.58  E-value=2.2e-08  Score=77.39  Aligned_cols=49  Identities=22%  Similarity=0.298  Sum_probs=44.3

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..-..||||++||+++||.++++|+..+|||-|+++.+.....+++...
T Consensus       608 dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak  656 (728)
T KOG0064|consen  608 DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK  656 (728)
T ss_pred             cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence            3445799999999999999999999999999999999999999998643

>KOG0063|consensus

Probab=98.53  E-value=9.2e-08  Score=72.62  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=43.4

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGK   54 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~   54 (79)
                      ++..|+-+.+||||+.||+++|.+|-..+++++.|||.+.||.+.+-
T Consensus       447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi  493 (592)
T KOG0063|consen  447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRI  493 (592)
T ss_pred             HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHH
Confidence            45678889999999999999999999999999999999999999765

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.52  E-value=3.9e-07  Score=61.24  Aligned_cols=47  Identities=19%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          15 KKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..|||||+..++||--|+    ..+++++||||.++||+.++..+.+++.
T Consensus       134 ~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~  184 (220)
T PF02463_consen  134 PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLK  184 (220)
T ss_dssp             TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3479999999999997653    4569999999999999999999999654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0063|consensus

Probab=98.49  E-value=7.8e-08  Score=73.00  Aligned_cols=50  Identities=16%  Similarity=0.221  Sum_probs=45.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      ...++-+.+||||+-||.+||.+.+.+.++.++|||.+.||...+-....
T Consensus       205 ~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~  254 (592)
T KOG0063|consen  205 NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI  254 (592)
T ss_pred             hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH
Confidence            35678899999999999999999999999999999999999998876554

>TIGR01069 mutS2 MutS2 family protein

Probab=98.42  E-value=4.9e-07  Score=71.79  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF   57 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~   57 (79)
                      -.....+++|+|++++..|++++ .+|+++|+|||++|+|+.....+.
T Consensus       378 si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala  424 (771)
T TIGR01069       378 SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALA  424 (771)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHH
Confidence            44566789999999999999887 789999999999999999998774

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.36  E-value=8.5e-07  Score=57.69  Aligned_cols=50  Identities=4%  Similarity=-0.215  Sum_probs=38.6

Q ss_pred             HhccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHH
Q psy1505          10 KKKKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVD---MHVGKHLFED   59 (79)
Q Consensus        10 ~~~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD---~~~~~~i~~~   59 (79)
                      ..+..+..+|+|+.|      ......+...+|+++++|||++.+|   ......+.++
T Consensus        64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l  122 (187)
T cd01124          64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRL  122 (187)
T ss_pred             EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHH
Confidence            456778889999998      4444455667899999999999999   6666666663

A related protein is found in archaea.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.29  E-value=2.9e-06  Score=57.38  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          22 KKNLLDIFKAVYK--NADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        22 qrqrl~iaral~~--~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +.+++.-+-..+.  +|+++|+|||++|+|+.....+..
T Consensus        90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~  128 (199)
T cd03283          90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASA  128 (199)
T ss_pred             HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHH
Confidence            3455544444455  999999999999999998876643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.25  E-value=3.1e-06  Score=57.77  Aligned_cols=37  Identities=14%  Similarity=0.054  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505          20 KKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHL   56 (79)
Q Consensus        20 gGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i   56 (79)
                      .-+-|+++++++++.+|+++|+|||++|+|+.....+
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~  129 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGL  129 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHH
Confidence            3467999999999999999999999999999765444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.25  E-value=2.1e-06  Score=64.92  Aligned_cols=59  Identities=19%  Similarity=0.373  Sum_probs=50.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .+..||-|||+|+++.-|+..+.+|+++||=.+.-||..+..+++.     .+-.++++|.|++
T Consensus       445 s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~-----lLp~LK~qGKTI~  503 (546)
T COG4615         445 SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV-----LLPLLKEQGKTIF  503 (546)
T ss_pred             cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH-----HhHHHHHhCCeEE
Confidence            3567999999999999999999999999999999999999999986     3445556666554

>KOG0065|consensus

Probab=98.18  E-value=5.3e-07  Score=74.73  Aligned_cols=49  Identities=10%  Similarity=0.123  Sum_probs=45.0

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      -|....-.|||||+||.+|-+++.+++++.+||+|.|||....-++...
T Consensus       254 Gnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~  302 (1391)
T KOG0065|consen  254 GNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKA  302 (1391)
T ss_pred             cccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHH
Confidence            3566778999999999999999999999999999999999999888883

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.17  E-value=2e-06  Score=65.42  Aligned_cols=51  Identities=12%  Similarity=0.137  Sum_probs=45.8

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +-+..++..+||-||+-|+.||++++.+|.+++.||-.+.||+.....+..
T Consensus       498 AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr  548 (593)
T COG2401         498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR  548 (593)
T ss_pred             hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence            345567889999999999999999999999999999999999998877766

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.94  E-value=3.4e-05  Score=60.02  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=35.1

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      .++..||||++|-++||-.++-      +.++ ++|||++.||+..+..+.+
T Consensus       547 ~~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~  597 (650)
T TIGR03185       547 IDKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVV  597 (650)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHH
Confidence            3678899999999866654332      3456 4699999999999998875

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.89  E-value=1.3e-05  Score=54.83  Aligned_cols=45  Identities=13%  Similarity=0.096  Sum_probs=30.4

Q ss_pred             cCCCCHHHHHH----HHHHHHHh--cCCCEEEEeCC---CCCCCHHHH-HHHHHH
Q psy1505          15 KKKKKKKKKNL----LDIFKAVY--KNADIYLLDDP---LSAVDMHVG-KHLFED   59 (79)
Q Consensus        15 ~~~LSgGqrqr----l~iaral~--~~p~llllDEP---t~~lD~~~~-~~i~~~   59 (79)
                      ..++|.|+.+.    ..++.++.  .+|+++|||||   |+++|.... ..+.+.
T Consensus        83 ~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~  137 (216)
T cd03284          83 SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEY  137 (216)
T ss_pred             hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH
Confidence            34567776664    35666664  69999999999   777887543 334443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK13695 putative NTPase; Provisional

Probab=97.61  E-value=7.9e-05  Score=48.66  Aligned_cols=48  Identities=13%  Similarity=0.112  Sum_probs=38.4

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDD--PLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDE--Pt~~lD~~~~~~i~~~~   60 (79)
                      ++...+|++++-...+++....+|+++++||  |+.++++...+.+.+.+
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~  123 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL  123 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH
Confidence            4456799999999999999889999999999  66677766666665543

>KOG0933|consensus

Probab=97.53  E-value=3e-05  Score=63.19  Aligned_cols=48  Identities=17%  Similarity=0.206  Sum_probs=40.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++||||||..|+++-.|+    ..++++||||-=++||-.+.+.|-+++.
T Consensus      1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIk 1130 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIK 1130 (1174)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHH
Confidence            45689999999999876543    4569999999999999999999988654

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.44  E-value=0.00034  Score=48.21  Aligned_cols=43  Identities=12%  Similarity=0.020  Sum_probs=30.0

Q ss_pred             CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHH
Q psy1505          17 KKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAV----DMHVGKHLFED   59 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~----~~p~llllDEPt~~l----D~~~~~~i~~~   59 (79)
                      .+|+++.++-.+.+.+.    .+|+++++||||+++    |+.....+.++
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~  145 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAF  145 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHH
Confidence            35666555544444333    369999999999999    77777777774

>PF13175 AAA_15: AAA ATPase domain

Probab=97.35  E-value=0.00067  Score=48.63  Aligned_cols=49  Identities=14%  Similarity=0.208  Sum_probs=39.9

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhc------C-CC---EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYK------N-AD---IYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~------~-p~---llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .-+..++|.|.++.+.|+-.+..      + +.   ++++|||-+.|-|..+..+++.+
T Consensus       336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L  394 (415)
T PF13175_consen  336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFL  394 (415)
T ss_pred             cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHH
Confidence            45778999999998887776521      1 22   99999999999999999999954

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.32  E-value=0.00073  Score=46.54  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          16 KKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ..+|.=+.-...++..+  +.+|+++|+|||+.|+++.....+...
T Consensus        88 ~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~a  133 (218)
T cd03286          88 KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHA  133 (218)
T ss_pred             cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHH
Confidence            34454444444444433  468999999999999999988777664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG3910 Predicted ATPase [General function prediction only]

Probab=97.24  E-value=0.00078  Score=46.84  Aligned_cols=59  Identities=17%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .+.-...|.|+--.--+.+.+ ++--++|||||-++|.|.-+-.++..      +..+.+.|..+|
T Consensus       124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~------l~~la~sGaQ~I  182 (233)
T COG3910         124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAI------LRDLADSGAQII  182 (233)
T ss_pred             CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHH------HHHHHhcCCeEE
Confidence            344567899999888888888 78899999999999999999888884      444444444443

>COG4637 Predicted ATPase [General function prediction only]

Probab=97.22  E-value=0.00085  Score=49.53  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=42.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~--p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..+||-|+-+.+++|.+|.+.  |.++++|||-++|=|.....+..++.
T Consensus       268 ~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~  316 (373)
T COG4637         268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMR  316 (373)
T ss_pred             hhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHH
Confidence            459999999999999999764  79999999999999999998888754

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.15  E-value=0.00048  Score=56.83  Aligned_cols=50  Identities=16%  Similarity=0.030  Sum_probs=43.6

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+....||||+|-..+||-.|+-    ..++++|||-=++||..++..+.+++.
T Consensus      1061 ~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~ 1114 (1163)
T COG1196        1061 LQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIK 1114 (1163)
T ss_pred             ccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHH
Confidence            44778899999999999987754    459999999999999999999999764

>KOG0964|consensus

Probab=97.14  E-value=0.00015  Score=59.27  Aligned_cols=46  Identities=15%  Similarity=0.163  Sum_probs=40.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+|||||+-.++||-.++.+    ++++||||.=++||++.+..|-.++
T Consensus      1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lI 1144 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLI 1144 (1200)
T ss_pred             HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHH
Confidence            348999999999999988653    4999999999999999999998853

>PF13166 AAA_13: AAA domain

Probab=97.08  E-value=0.0024  Score=49.62  Aligned_cols=49  Identities=20%  Similarity=0.227  Sum_probs=41.2

Q ss_pred             cCcCCCCHHHHHHHHHHHHH--hc-------CCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAV--YK-------NADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral--~~-------~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+...||-|++.-++||--|  +.       +..++++|.|.++||...+..+...+.
T Consensus       496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~  553 (712)
T PF13166_consen  496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLK  553 (712)
T ss_pred             cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHH
Confidence            45689999999999998744  23       568999999999999999999988643

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.01  E-value=0.0026  Score=43.29  Aligned_cols=42  Identities=12%  Similarity=0.152  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHH
Q psy1505          17 KKKKKKKNLLDIFKAVYK--NADIYLLDDPLSA---VDMHVGKHLFE   58 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~--~p~llllDEPt~~---lD~~~~~~i~~   58 (79)
                      ..|.++.+.+..+..++.  +|+++++||||+.   .|......+++
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~  146 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT  146 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence            457788999999998887  8999999999964   44444444433

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.95  E-value=0.0038  Score=38.68  Aligned_cols=35  Identities=11%  Similarity=-0.019  Sum_probs=27.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD   49 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD   49 (79)
                      ....+.+...+...+++...+|+++++|||+.-++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~   99 (165)
T cd01120          65 ADDPAAARLLSKAERLRERGGDDLIILDELTRLVR   99 (165)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHH
Confidence            34455666677888899999999999999995443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=96.93  E-value=0.0015  Score=52.58  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=28.5

Q ss_pred             HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHh
Q psy1505          28 IFKAVYKNADIYLLDDPLSAV-DMHVGKHLFEDC   60 (79)
Q Consensus        28 iaral~~~p~llllDEPt~~l-D~~~~~~i~~~~   60 (79)
                      |++++..+|.++++|||+.+| |+.....+.+++
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~l  713 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWL  713 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHH
Confidence            567888999999999999999 788888888853

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=96.88  E-value=0.00054  Score=54.89  Aligned_cols=28  Identities=11%  Similarity=0.063  Sum_probs=24.5

Q ss_pred             hcCCCEEEEeCCCCCC-CHHHHHHHHHHh
Q psy1505          33 YKNADIYLLDDPLSAV-DMHVGKHLFEDC   60 (79)
Q Consensus        33 ~~~p~llllDEPt~~l-D~~~~~~i~~~~   60 (79)
                      ..+|.++++|||+.+| |+.....+.+++
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~l  678 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWL  678 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHH
Confidence            5799999999999999 688888888853

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=96.82  E-value=0.0048  Score=42.59  Aligned_cols=41  Identities=12%  Similarity=0.124  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505          16 KKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHL   56 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i   56 (79)
                      ..+|.=+.....++..+  +.+|+++|+|||..|.|+.....+
T Consensus        89 ~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i  131 (222)
T cd03287          89 HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAI  131 (222)
T ss_pred             cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHH
Confidence            34454444444444443  468999999999888886655543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.50  E-value=0.0012  Score=46.44  Aligned_cols=34  Identities=12%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             cCCCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy1505          15 KKKKKKKK--------KNLLDIFKAVYKNADIYLLDDPLSAVDM   50 (79)
Q Consensus        15 ~~~LSgGq--------rqrl~iaral~~~p~llllDEPt~~lD~   50 (79)
                      ...+|||+        +|++++||++..+++|.+|  ||+.+|.
T Consensus       127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~  168 (249)
T cd01128         127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDT  168 (249)
T ss_pred             CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecC
Confidence            34579999        9999999999899999999  9999994

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0018|consensus

Probab=95.87  E-value=0.0062  Score=50.36  Aligned_cols=52  Identities=13%  Similarity=0.053  Sum_probs=44.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~----p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ++-++...||||++=..+||-.++..    +++++|||-=++||..+...|...+.
T Consensus      1044 KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr 1099 (1141)
T KOG0018|consen 1044 KRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR 1099 (1141)
T ss_pred             cccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh
Confidence            44677889999999999999988654    59999999999999999999998543

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.82  E-value=0.0043  Score=42.46  Aligned_cols=28  Identities=18%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             HHhcCCCEEEEeCCCCC------CCHHHHHHHHHH
Q psy1505          31 AVYKNADIYLLDDPLSA------VDMHVGKHLFED   59 (79)
Q Consensus        31 al~~~p~llllDEPt~~------lD~~~~~~i~~~   59 (79)
                      +...+|+++++| |+++      .|+.....+++.
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~  140 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKA  140 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHH
Confidence            345799999999 7764      688877777774

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>KOG0962|consensus

Probab=95.81  E-value=0.0093  Score=50.15  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=34.7

Q ss_pred             CCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          18 KKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        18 LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      -|-||+=      |+++|=.+..++.+|-|||||+.||..+..-+..
T Consensus      1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~ 1230 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAK 1230 (1294)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHH
Confidence            4667764      7788899999999999999999999998876644

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=95.50  E-value=0.021  Score=45.80  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=24.2

Q ss_pred             HHHhcCCCEEEEeCCCCCCC-HHHHHHHHHH
Q psy1505          30 KAVYKNADIYLLDDPLSAVD-MHVGKHLFED   59 (79)
Q Consensus        30 ral~~~p~llllDEPt~~lD-~~~~~~i~~~   59 (79)
                      ..+-.+|.++++|||..++| +.....+.++
T Consensus       630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~  660 (811)
T PRK13873        630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREW  660 (811)
T ss_pred             HHhcCCCcEEEEcChhhhCCCHHHHHHHHHH
Confidence            33456899999999999999 6777777774

>KOG0996|consensus

Probab=94.99  E-value=0.013  Score=48.98  Aligned_cols=48  Identities=15%  Similarity=0.115  Sum_probs=41.0

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.+..||||++=.-+||-.++.    ..++++|||-=++||..++.-|-+.+
T Consensus      1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYI 1242 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYI 1242 (1293)
T ss_pred             hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHH
Confidence            5688999999999888887754    34999999999999999998887754

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=94.98  E-value=0.035  Score=41.33  Aligned_cols=45  Identities=20%  Similarity=0.201  Sum_probs=39.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          15 KKKKKKKKKNLLDIFKAVYK---------NADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~---------~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ....|.||++-+.+|.-|+.         .++|++|||-++-||+.-+..+++.
T Consensus       273 ~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~  326 (363)
T COG1195         273 ADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT  326 (363)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh
Confidence            45789999999988876654         6799999999999999999999996

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=94.91  E-value=0.076  Score=37.76  Aligned_cols=19  Identities=11%  Similarity=0.142  Sum_probs=14.4

Q ss_pred             HHHHHhcCCCEEEEeCCCC
Q psy1505          28 IFKAVYKNADIYLLDDPLS   46 (79)
Q Consensus        28 iaral~~~p~llllDEPt~   46 (79)
                      +..+.+++|+++++|||+.
T Consensus       187 ~~~i~~~~P~villDE~~~  205 (270)
T TIGR02858       187 MMLIRSMSPDVIVVDEIGR  205 (270)
T ss_pred             HHHHHhCCCCEEEEeCCCc
Confidence            3344447999999999974

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=94.76  E-value=0.099  Score=42.47  Aligned_cols=42  Identities=12%  Similarity=0.094  Sum_probs=33.8

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYK--NADIYLLDDP---LSAVDMHV   52 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~--~p~llllDEP---t~~lD~~~   52 (79)
                      .|.-...+|--+..+.+++.++-.  ++.++|+|||   |+.+|...
T Consensus       660 ~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a  706 (854)
T PRK05399        660 SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS  706 (854)
T ss_pred             ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH
Confidence            355566788889999999998876  8999999999   77777544

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=94.57  E-value=0.068  Score=42.80  Aligned_cols=29  Identities=10%  Similarity=0.184  Sum_probs=24.4

Q ss_pred             HHhcCCCEEEEeCCCCCCC-HHHHHHHHHH
Q psy1505          31 AVYKNADIYLLDDPLSAVD-MHVGKHLFED   59 (79)
Q Consensus        31 al~~~p~llllDEPt~~lD-~~~~~~i~~~   59 (79)
                      .+..+|.++++|||...|| +.....+.++
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~  667 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDW  667 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHH
Confidence            4567899999999999999 7777777774

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=93.99  E-value=0.11  Score=39.49  Aligned_cols=38  Identities=8%  Similarity=0.038  Sum_probs=34.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHH
Q psy1505          14 KKKKKKKKKKNLLDIFKAVY-------KNADIYLLDDPLSAVDMH   51 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~-------~~p~llllDEPt~~lD~~   51 (79)
                      ...+-|.|+|.|+..+.+.+       .++-++++|+||...|+.
T Consensus       218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~  262 (432)
T PRK06793        218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR  262 (432)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence            34678999999999999887       789999999999999997

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=93.67  E-value=0.61  Score=27.18  Aligned_cols=45  Identities=22%  Similarity=0.192  Sum_probs=37.2

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF   57 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~   57 (79)
                      ......++++..+..+.++-...|.++++||+..-.+........
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~  100 (148)
T smart00382       56 GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL  100 (148)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence            345567888888989999988889999999999999888776544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF13514 AAA_27: AAA domain

Probab=93.21  E-value=0.22  Score=41.33  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=38.2

Q ss_pred             ccCcCCCCHHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKN------LLDIFKAV-YKNADI-YLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrq------rl~iaral-~~~p~l-lllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...+..||.|.+=      |++++..+ ..+.++ +|+|+++.+.|..-...+++++
T Consensus      1020 ~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L 1076 (1111)
T PF13514_consen 1020 RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELL 1076 (1111)
T ss_pred             EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHH
Confidence            3567789999986      55555566 345566 8999999999999999998854

>PRK04863 mukB cell division protein MukB; Provisional

Probab=93.16  E-value=0.045  Score=46.91  Aligned_cols=50  Identities=16%  Similarity=0.144  Sum_probs=38.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHh--------cC--------C-CEEEEeCCCCCCCHHHHHHHHHHhhhcC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVY--------KN--------A-DIYLLDDPLSAVDMHVGKHLFEDCISGG   64 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~--------~~--------p-~llllDEPt~~lD~~~~~~i~~~~~~~~   64 (79)
                      -.+.||||++..+.++..++        ..        | ++|+|||- +++|......++++|...+
T Consensus      1362 ~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~ 1428 (1486)
T PRK04863       1362 ESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLD 1428 (1486)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcC
Confidence            35889999998887766554        21        2 45689999 9999999999999876433

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.58  E-value=0.27  Score=39.04  Aligned_cols=48  Identities=15%  Similarity=0.227  Sum_probs=38.1

Q ss_pred             cCcCC-CCHHHHHHHHHHHHH---hcCC-----CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKK-KKKKKKNLLDIFKAV---YKNA-----DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~-LSgGqrqrl~iaral---~~~p-----~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .-.++ ||-|++.-++++--|   ..+|     .++++|.|.+++|......+..++
T Consensus       524 ~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v  580 (758)
T COG4694         524 QLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLV  580 (758)
T ss_pred             ccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHH
Confidence            34455 999999999876544   4566     678999999999999988888843

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=92.41  E-value=0.3  Score=37.39  Aligned_cols=48  Identities=15%  Similarity=0.276  Sum_probs=40.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      --.+=||...|=..|.-||-.++++||+||=|++..--.+...++.++
T Consensus       319 sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv  366 (448)
T PF09818_consen  319 STENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALV  366 (448)
T ss_pred             cccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhh
Confidence            345679999999999999999999999999999987776665555544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=91.98  E-value=0.013  Score=44.37  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=26.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIF--KAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~ia--ral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +..++.+.++|+|++|||.|+  .++...|+..          ...+..++++
T Consensus       107 ~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~L  149 (484)
T TIGR02655       107 ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRL  149 (484)
T ss_pred             HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHH
Confidence            455666778888888888888  4554444333          3556666663

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=91.73  E-value=0.35  Score=32.31  Aligned_cols=30  Identities=13%  Similarity=0.234  Sum_probs=23.3

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ++++++..+|+++++|||.   |++....+.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~   95 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLALTA   95 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH
Confidence            5778999999999999996   66665555553

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.30  E-value=0.35  Score=39.57  Aligned_cols=48  Identities=13%  Similarity=0.080  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHH---HHHHhcC--------C--CEEEEeCCCCCCCHHHHHHHHHHhhhc
Q psy1505          16 KKKKKKKKNLLDI---FKAVYKN--------A--DIYLLDDPLSAVDMHVGKHLFEDCISG   63 (79)
Q Consensus        16 ~~LSgGqrqrl~i---aral~~~--------p--~llllDEPt~~lD~~~~~~i~~~~~~~   63 (79)
                      +.+||||+++++.   |.+|...        |  ..+||||.++--|+.....++..+.+-
T Consensus       989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f 1049 (1104)
T COG4913         989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF 1049 (1104)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc
Confidence            4699999999974   5555432        2  579999999999999888887766533

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=90.71  E-value=0.32  Score=31.38  Aligned_cols=43  Identities=19%  Similarity=0.114  Sum_probs=32.5

Q ss_pred             cCcCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          13 KKKKKKKKKKKNLLD--IFKAVYK-NADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~--iaral~~-~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .++..+|+|+++++.  +.+.+-. +++++    |++++|......+++.
T Consensus       143 nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~  188 (196)
T PRK00454        143 TKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAA  188 (196)
T ss_pred             ECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHH
Confidence            456678999999877  5566544 34443    9999999999999985

>PF00488 MutS_V: MutS domain V C-terminus

Probab=90.49  E-value=2.5  Score=29.26  Aligned_cols=47  Identities=6%  Similarity=0.019  Sum_probs=33.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +.....+|.=+.-...++..+  +.+-.++|+||+..|-++.....+..
T Consensus        97 d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~  145 (235)
T PF00488_consen   97 DSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAI  145 (235)
T ss_dssp             -SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHH
T ss_pred             cccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHH
Confidence            344556777777777777766  35678999999999999998776544

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=87.76  E-value=2.3  Score=33.48  Aligned_cols=45  Identities=7%  Similarity=0.065  Sum_probs=36.4

Q ss_pred             cCCCCHHHHHHHHHHH--HHhcC--CCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          15 KKKKKKKKKNLLDIFK--AVYKN--ADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        15 ~~~LSgGqrqrl~iar--al~~~--p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ..-.|||+-.|+++|-  +++..  .+.+||||-=+|+.-.....|-+.
T Consensus       429 ~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~  477 (557)
T COG0497         429 AKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKK  477 (557)
T ss_pred             HhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHH
Confidence            3567999999999997  33333  469999999999999988888774

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=87.46  E-value=1.1  Score=32.50  Aligned_cols=31  Identities=13%  Similarity=0.200  Sum_probs=24.5

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        26 l~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      -+++++|..+|+++++||+.   |+......++.
T Consensus       186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a  216 (343)
T TIGR01420       186 NALRAALREDPDVILIGEMR---DLETVELALTA  216 (343)
T ss_pred             HHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH
Confidence            34778899999999999997   77777655553

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=87.40  E-value=1.2  Score=31.86  Aligned_cols=20  Identities=10%  Similarity=0.054  Sum_probs=17.9

Q ss_pred             HHHHHHhcCCCEEEEeCCCC
Q psy1505          27 DIFKAVYKNADIYLLDDPLS   46 (79)
Q Consensus        27 ~iaral~~~p~llllDEPt~   46 (79)
                      .+..+|..+|+++++|||.+
T Consensus       210 ~l~~~Lr~~pd~ii~gE~r~  229 (308)
T TIGR02788       210 LLQSCLRMRPDRIILGELRG  229 (308)
T ss_pred             HHHHHhcCCCCeEEEeccCC
Confidence            56778899999999999996

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=86.98  E-value=0.48  Score=34.43  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHHHHHhcCC----CEEEEeCCCCCCCHHHHHHHHHHhhhc--CcchhhhcCC
Q psy1505          18 KKKKKKNLLDIFKAVYKNA----DIYLLDDPLSAVDMHVGKHLFEDCISG--GIIPMINSPG   73 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p----~llllDEPt~~lD~~~~~~i~~~~~~~--~~~~~l~~~g   73 (79)
                      .+-.|-+.  +...+...|    .=+++|||+.+||+..++.+...+.+.  +.+..+.+|+
T Consensus        93 I~id~iR~--l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~  152 (325)
T PRK08699         93 IKIDAVRE--IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHA  152 (325)
T ss_pred             cCHHHHHH--HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            44455443  333343334    235578999999999999999976532  3334445554

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=86.87  E-value=1.3  Score=33.39  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             cCCCEEEEeCCCCCCCHH-HHHHHHHH
Q psy1505          34 KNADIYLLDDPLSAVDMH-VGKHLFED   59 (79)
Q Consensus        34 ~~p~llllDEPt~~lD~~-~~~~i~~~   59 (79)
                      .+|++|++|||...++.. .+..+++.
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~  219 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHT  219 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHH
Confidence            479999999999887654 34566664

>TIGR00152 dephospho-CoA kinase

Probab=86.25  E-value=0.15  Score=33.60  Aligned_cols=39  Identities=3%  Similarity=-0.025  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          20 KKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        20 gGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .|+-+|..||.++..+|+.+..+|  +.++|.....+.+.+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i   98 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLL   98 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH
Confidence            478999999999999999988777  789999999998854

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>KOG0250|consensus

Probab=85.29  E-value=0.32  Score=40.66  Aligned_cols=52  Identities=12%  Similarity=0.061  Sum_probs=43.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+-+....||||+|.-..++-.|.    +.+++..|||-=.-+|..++...+++++
T Consensus       982 ~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv 1037 (1074)
T KOG0250|consen  982 KAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLV 1037 (1074)
T ss_pred             cccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            345567789999999988888774    5779999999999999999999998754

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=83.54  E-value=1.3  Score=34.92  Aligned_cols=24  Identities=13%  Similarity=0.322  Sum_probs=21.3

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          37 DIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        37 ~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+|++|| +..||+..+..+++.+.
T Consensus       267 GvL~LDE-i~~Ld~~~Q~~Ll~~Le  290 (615)
T TIGR02903       267 GVLFIDE-IGELDPLLQNKLLKVLE  290 (615)
T ss_pred             CeEEEec-cccCCHHHHHHHHHHHh
Confidence            4999999 79999999999988764

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=82.74  E-value=5.7  Score=32.58  Aligned_cols=45  Identities=9%  Similarity=0.059  Sum_probs=32.0

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVY--KNADIYLLDDPLSAVDMHVGKHL   56 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~--~~p~llllDEPt~~lD~~~~~~i   56 (79)
                      |.-...+|-=+..+.+++..|-  .++.++|+||+..|.++.....+
T Consensus       646 d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~ai  692 (840)
T TIGR01070       646 DDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLAL  692 (840)
T ss_pred             cchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHH
Confidence            3444556766777777777764  57899999999777776655443

>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917

Probab=81.31  E-value=2.1  Score=30.28  Aligned_cols=35  Identities=23%  Similarity=0.439  Sum_probs=24.8

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcC
Q psy1505          27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGG   64 (79)
Q Consensus        27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~   64 (79)
                      ++|.|-+. -.+. | |||.|+|.++...+.+.|...|
T Consensus       168 avA~aca~-~g~~-l-EPTGGIdl~Nf~~I~~i~ldaG  202 (236)
T TIGR03581       168 AVAKACAK-HGFY-L-EPTGGIDLDNFEEIVQIALDAG  202 (236)
T ss_pred             HHHHHHHH-cCCc-c-CCCCCccHHhHHHHHHHHHHcC
Confidence            34444433 3344 3 9999999999999999887544

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.

>COG4938 Uncharacterized conserved protein [Function unknown]

Probab=80.84  E-value=1.8  Score=32.05  Aligned_cols=41  Identities=7%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             HhcCC-CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          32 VYKNA-DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        32 l~~~p-~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      ++..| -++|..+|-+.|-|+.+..+.+      ++..+.+.|..+++
T Consensus       256 li~K~~~lIIIEnPEAHLHP~gQs~lg~------llA~~a~~gvqvVv  297 (374)
T COG4938         256 LIVKKKYLIIIENPEAHLHPEGQSKLGD------LLAELAARGVQVVV  297 (374)
T ss_pred             eeecCCcEEEEcCchhhcCchhHHHHHH------HHHHHHhcCcEEEE
Confidence            34444 6788999999999999999999      56777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		9e-10
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		7e-05
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		7e-05
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		7e-05
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		7e-05
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		7e-05
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		7e-05
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		1e-04
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		1e-04
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		1e-04
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		1e-04
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		1e-04
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		1e-04
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		1e-04

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVY NADIYL DDPLSAVD HVGKH+FE+ I
Sbjct: 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 151 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 186

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 138 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 173

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   K +FE C+
Sbjct: 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   + +FE C+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 26  LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           + + +AVYK+AD+YLLD P   +D+   + +FE C+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.87
1g6h_A	257	High-affinity branched-chain amino acid transport	99.87
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.87
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.87
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.87
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.87
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.86
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.86
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.86
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.86
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.86
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.86
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.85
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.85
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.85
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.85
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.84
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.84
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.84
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.84
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.84
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.84
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.84
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.84
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.83
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.83
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.83
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.83
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.82
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.82
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.82
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.81
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.81
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.8
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.8
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.79
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.79
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.79
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.79
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.78
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.78
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.77
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.77
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.77
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.77
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.76
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.76
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.76
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.76
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.75
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.74
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.72
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.71
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.7
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.68
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.68
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.68
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.67
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.66
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.66
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.66
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.66
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.65
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.65
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.65
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.65
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.64
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.62
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.61
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.61
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.59
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.55
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.53
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.52
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.46
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.32
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.23
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.21
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.9
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.87
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.83
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.72
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.67
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.63
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.57
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.55
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.54
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.53
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.49
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.49
2og2_A	359	Putative signal recognition particle receptor; nuc	98.46
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.28
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.24
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.16
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.13
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.09
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.05
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.04
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.04
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.95
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.94
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.93
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.83
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.82
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.77
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.62
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.59
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.51
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.51
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.51
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.13
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.09
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.08
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.04
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.75
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.7
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.67
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.62
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.6
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.55
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.31
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.3
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.29
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.25
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.12
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.1
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.79
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.48
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.32
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.25
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.97
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.71
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.54
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.16
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.9
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.7
2r6a_A	454	DNAB helicase, replicative helicase; replication,	92.74
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.65
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	92.44
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	91.84
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.24
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	88.31
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	88.28
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	87.89
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	84.61
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	84.34
1p9r_A	418	General secretion pathway protein E; bacterial typ	84.34
2ewv_A	372	Twitching motility protein PILT; pilus retraction	83.47
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	83.25
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	82.27
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	82.08

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.87  E-value=1.1e-22  Score=138.63  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=47.8

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       139 ~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l  188 (235)
T 3tif_A          139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLL  188 (235)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999964

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.87  E-value=1.7e-22  Score=139.12  Aligned_cols=65  Identities=18%  Similarity=0.353  Sum_probs=54.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG   73 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g   73 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++.   +.+.+..+.+|+
T Consensus       145 ~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  212 (257)
T 1g6h_A          145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR  212 (257)
T ss_dssp             GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            45789999999999999999999999999999999999999999999999643   224444444544

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.87  E-value=1.6e-22  Score=141.30  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++++
T Consensus       135 ~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l  186 (275)
T 3gfo_A          135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL  186 (275)
T ss_dssp             GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999964

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.87  E-value=1.5e-22  Score=137.10  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       132 ~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l  183 (224)
T 2pcj_A          132 DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF  183 (224)
T ss_dssp             TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999954

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.87  E-value=2.2e-22  Score=139.12  Aligned_cols=52  Identities=19%  Similarity=0.280  Sum_probs=49.2

Q ss_pred             HH-hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KK-KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~-~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +. .++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus       144 ~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l  196 (262)
T 1b0u_A          144 ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM  196 (262)
T ss_dssp             HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            45 78999999999999999999999999999999999999999999999964

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.87  E-value=3.1e-22  Score=136.69  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus       131 ~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l  182 (240)
T 1ji0_A          131 ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI  182 (240)
T ss_dssp             TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999964

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.87  E-value=3.1e-22  Score=138.96  Aligned_cols=52  Identities=19%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus       151 ~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l  202 (263)
T 2olj_A          151 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM  202 (263)
T ss_dssp             GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.86  E-value=2.7e-22  Score=145.42  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||||||+|||||+.+|++|||||||++||+..+..+++++
T Consensus       155 ~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL  206 (366)
T 3tui_C          155 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL  206 (366)
T ss_dssp             GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999954

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.86  E-value=5.6e-22  Score=137.11  Aligned_cols=52  Identities=23%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus       138 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l  189 (256)
T 1vpl_A          138 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL  189 (256)
T ss_dssp             GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999954

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.86  E-value=7.6e-22  Score=136.58  Aligned_cols=65  Identities=20%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG   73 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g   73 (79)
                      ++.++++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++++.   ..+.+..+.+|+
T Consensus       130 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd  197 (266)
T 2yz2_A          130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD  197 (266)
T ss_dssp             HHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            56789999999999999999999999999999999999999999999999643   224444444544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.86  E-value=5.1e-22  Score=136.30  Aligned_cols=65  Identities=11%  Similarity=0.043  Sum_probs=50.3

Q ss_pred             HHhccCcCC-CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505           9 KKKKKKKKK-KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG   73 (79)
Q Consensus         9 ~~~~~~~~~-LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g   73 (79)
                      +..++++.+ |||||||||+|||||+.+|+++||||||+|||+..+..+++++.   ..+.+..+.+|+
T Consensus       134 ~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd  202 (250)
T 2d2e_A          134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY  202 (250)
T ss_dssp             GGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred             hHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            456888999 99999999999999999999999999999999999999999653   223444444554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.86  E-value=7e-22  Score=142.87  Aligned_cols=51  Identities=20%  Similarity=0.361  Sum_probs=48.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ++++++|.+|||||||||+|||||+.+|+++||||||++||+..+..+++.
T Consensus       130 ~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~  180 (359)
T 3fvq_A          130 ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED  180 (359)
T ss_dssp             GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.86  E-value=7e-22  Score=136.20  Aligned_cols=52  Identities=21%  Similarity=0.295  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+++
T Consensus       120 ~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l  171 (253)
T 2nq2_C          120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL  171 (253)
T ss_dssp             GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHH
T ss_pred             HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999964

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.85  E-value=3.6e-22  Score=136.87  Aligned_cols=52  Identities=25%  Similarity=0.393  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus       118 ~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l  169 (240)
T 2onk_A          118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL  169 (240)
T ss_dssp             TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred             HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999964

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.85  E-value=8.3e-22  Score=137.65  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=55.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcch--hhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIP--MINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~--~l~~~g~   74 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++.   ..+.+.  .+.+|+.
T Consensus       153 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~  223 (279)
T 2ihy_A          153 AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI  223 (279)
T ss_dssp             GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH
Confidence            45789999999999999999999999999999999999999999999999653   224444  5555544

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.85  E-value=1.8e-21  Score=134.93  Aligned_cols=64  Identities=16%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             HhccCcC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh---hcCcchhhhcCC
Q psy1505          10 KKKKKKK-KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI---SGGIIPMINSPG   73 (79)
Q Consensus        10 ~~~~~~~-~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~---~~~~~~~l~~~g   73 (79)
                      ..++++. +|||||||||+|||||+.+|+++||||||+|||+..+..+++++.   +.+.+..+.+|+
T Consensus       156 ~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd  223 (267)
T 2zu0_C          156 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY  223 (267)
T ss_dssp             TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred             HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence            4567787 599999999999999999999999999999999999999999643   223444444443

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.85  E-value=1.3e-21  Score=142.44  Aligned_cols=52  Identities=19%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       125 ~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l  176 (381)
T 3rlf_A          125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI  176 (381)
T ss_dssp             GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999853

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.84  E-value=1.8e-21  Score=140.38  Aligned_cols=52  Identities=13%  Similarity=0.279  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       137 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  188 (355)
T 1z47_A          137 SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV  188 (355)
T ss_dssp             GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999999999854

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.84  E-value=1.6e-21  Score=135.28  Aligned_cols=52  Identities=13%  Similarity=0.226  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.      +|+++||||||+|||+..+..+++++
T Consensus       133 ~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l  190 (266)
T 4g1u_C          133 ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL  190 (266)
T ss_dssp             TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            45788999999999999999999999      99999999999999999999999964

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.84  E-value=2.7e-21  Score=139.64  Aligned_cols=52  Identities=17%  Similarity=0.317  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       125 ~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  176 (359)
T 2yyz_A          125 NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI  176 (359)
T ss_dssp             GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.84  E-value=3.3e-21  Score=133.92  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=47.5

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       150 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l  199 (271)
T 2ixe_A          150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL  199 (271)
T ss_dssp             CCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             hcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999964

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.84  E-value=2.9e-21  Score=139.83  Aligned_cols=52  Identities=15%  Similarity=0.381  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       131 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  182 (372)
T 1g29_1          131 ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL  182 (372)
T ss_dssp             GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred             hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999854

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.84  E-value=2.2e-21  Score=139.50  Aligned_cols=52  Identities=23%  Similarity=0.282  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       119 ~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l  170 (348)
T 3d31_A          119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML  170 (348)
T ss_dssp             TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999964

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.84  E-value=1.9e-21  Score=139.89  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       132 ~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  183 (353)
T 1oxx_K          132 HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV  183 (353)
T ss_dssp             GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999964

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.84  E-value=4.2e-21  Score=131.78  Aligned_cols=62  Identities=16%  Similarity=0.236  Sum_probs=50.9

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      ++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++.+.  ..+.+..+.+|+
T Consensus       140 ~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~  203 (247)
T 2ff7_A          140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR  203 (247)
T ss_dssp             STTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45678999999999999999999999999999999999999999999643  223344444443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.84  E-value=3.6e-21  Score=132.63  Aligned_cols=52  Identities=15%  Similarity=0.204  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNAD-------IYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~-------llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.++++.+|||||||||+|||||+.+|+       ++||||||+|||+..+..+.+++
T Consensus       118 ~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l  176 (249)
T 2qi9_C          118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL  176 (249)
T ss_dssp             GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHH
Confidence            46788999999999999999999999999       99999999999999999999964

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.83  E-value=2.4e-21  Score=139.96  Aligned_cols=52  Identities=21%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       125 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  176 (362)
T 2it1_A          125 KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL  176 (362)
T ss_dssp             TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHH
T ss_pred             hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999964

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.83  E-value=2e-21  Score=131.54  Aligned_cols=49  Identities=27%  Similarity=0.426  Sum_probs=46.9

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++.+|||||||||+|||||+.+|+++||||||++||+..+..+++.+
T Consensus       128 ~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l  176 (214)
T 1sgw_A          128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI  176 (214)
T ss_dssp             TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred             CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999964

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.83  E-value=3.3e-21  Score=139.66  Aligned_cols=52  Identities=15%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++
T Consensus       133 ~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  184 (372)
T 1v43_A          133 ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI  184 (372)
T ss_dssp             GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.83  E-value=1.4e-20  Score=130.04  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      ++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++.+.  ..+.+..+.+|+
T Consensus       150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~  213 (260)
T 2ghi_A          150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR  213 (260)
T ss_dssp             SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSS
T ss_pred             cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            46788999999999999999999999999999999999999999998653  223444445554

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.82  E-value=1.9e-20  Score=127.69  Aligned_cols=50  Identities=52%  Similarity=0.799  Sum_probs=47.4

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++.+
T Consensus       121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l  170 (237)
T 2cbz_A          121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV  170 (237)
T ss_dssp             ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999965

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.82  E-value=3.7e-20  Score=125.66  Aligned_cols=48  Identities=31%  Similarity=0.560  Sum_probs=45.1

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +.++.+|||||||||+|||||+.+|+++||||||++||+..+..+++.
T Consensus       125 ~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~  172 (229)
T 2pze_A          125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES  172 (229)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred             cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999999995

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.82  E-value=2.6e-20  Score=129.26  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=55.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+++.+..-+..+.+|+.
T Consensus       120 ~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~  185 (263)
T 2pjz_A          120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHEL  185 (263)
T ss_dssp             GGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCG
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence            557899999999999999999999999999999999999999999999997652211444556653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.81  E-value=5.5e-21  Score=130.52  Aligned_cols=49  Identities=18%  Similarity=0.274  Sum_probs=45.5

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.+
T Consensus       134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l  182 (243)
T 1mv5_A          134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL  182 (243)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred             ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999998854

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.81  E-value=5.4e-20  Score=118.69  Aligned_cols=50  Identities=14%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             hccCcCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIF------KAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~ia------ral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+||++||      ||++.+|+++||||||+|||+..+..+.+.+
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l  106 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM  106 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHH
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            5788999999999999876      8999999999999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.81  E-value=4.2e-20  Score=138.38  Aligned_cols=52  Identities=17%  Similarity=0.250  Sum_probs=48.9

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+++++
T Consensus       150 ~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L  201 (538)
T 1yqt_A          150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAI  201 (538)
T ss_dssp             TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999964

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.80  E-value=4.9e-20  Score=139.95  Aligned_cols=52  Identities=15%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|++|||||||++||+..+..+++++
T Consensus       220 ~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L  271 (607)
T 3bk7_A          220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI  271 (607)
T ss_dssp             TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999964

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.80  E-value=5.9e-20  Score=137.83  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=49.3

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++++
T Consensus       377 ~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l  428 (538)
T 3ozx_A          377 RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI  428 (538)
T ss_dssp             GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999954

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.80  E-value=1.1e-19  Score=128.66  Aligned_cols=50  Identities=22%  Similarity=0.266  Sum_probs=45.9

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +.++.+|||||||||+|||||+.+|+++||||||++||+.....+++.+.
T Consensus       185 ~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~  234 (306)
T 3nh6_A          185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLA  234 (306)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             cCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            45567999999999999999999999999999999999999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.1e-19  Score=136.69  Aligned_cols=52  Identities=19%  Similarity=0.226  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       213 ~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l  264 (608)
T 3j16_B          213 NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII  264 (608)
T ss_dssp             GGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             chhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999953

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1e-19  Score=138.38  Aligned_cols=52  Identities=19%  Similarity=0.150  Sum_probs=49.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.+++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++++
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll  510 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI  510 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.79  E-value=8.2e-20  Score=138.70  Aligned_cols=50  Identities=10%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||||||+|||||+.+|+  +|||||||+|||+..+..+++++
T Consensus       196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l  247 (670)
T 3ux8_A          196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL  247 (670)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            578999999999999999999999998  99999999999999999999953

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.79  E-value=1.9e-19  Score=135.13  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||+|||+|||||+.+|+++||||||++||+..+..+++++
T Consensus       130 ~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l  181 (538)
T 3ozx_A          130 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI  181 (538)
T ss_dssp             GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.78  E-value=2.7e-19  Score=125.66  Aligned_cols=47  Identities=32%  Similarity=0.579  Sum_probs=43.1

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .++.+|||||+|||+|||||+.+|+++||||||+|||+..+..+++.
T Consensus       155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~  201 (290)
T 2bbs_A          155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES  201 (290)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999995

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.78  E-value=2.8e-19  Score=133.95  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++++
T Consensus       393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l  444 (538)
T 1yqt_A          393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI  444 (538)
T ss_dssp             GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999964

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.77  E-value=1.9e-19  Score=131.13  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             HHhccCcCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhh--cCcchhhhcCC
Q psy1505           9 KKKKKKKKK-----------KKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS--GGIIPMINSPG   73 (79)
Q Consensus         9 ~~~~~~~~~-----------LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~--~~~~~~l~~~g   73 (79)
                      ++.+++|.+           |||||||||+|||||+.+|+++||||||++||+..+..+.+.+.+  .+.+..+.+|.
T Consensus       136 ~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd  213 (390)
T 3gd7_A          136 SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR  213 (390)
T ss_dssp             HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS
T ss_pred             HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence            567888888           999999999999999999999999999999999999999987542  23334444443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.77  E-value=3.7e-19  Score=135.12  Aligned_cols=52  Identities=19%  Similarity=0.281  Sum_probs=49.2

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+++
T Consensus       463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l  514 (607)
T 3bk7_A          463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI  514 (607)
T ss_dssp             TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999954

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.77  E-value=4.1e-19  Score=134.84  Aligned_cols=51  Identities=12%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||||||+|||||+.+|   ++|||||||+|||+..+..+++++
T Consensus       536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l  589 (670)
T 3ux8_A          536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL  589 (670)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence            357899999999999999999999887   599999999999999999999954

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.77  E-value=7.2e-19  Score=126.10  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=46.1

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVY------KNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~------~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++.+|||||+|||+||+||+      .+|+++||||||++||+..+..+++.+
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l  328 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVL  328 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHH
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            6789999999999999999999      799999999999999999999999953

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.76  E-value=1e-18  Score=131.07  Aligned_cols=62  Identities=13%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      +..+.+||||||||++||||++.+|+++||||||++||+.....+.+.+.  ..+.+..+.+|.
T Consensus       475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~  538 (582)
T 3b60_A          475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR  538 (582)
T ss_dssp             CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            34568999999999999999999999999999999999999999998653  224444444443

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.76  E-value=1.4e-18  Score=130.76  Aligned_cols=62  Identities=23%  Similarity=0.307  Sum_probs=51.2

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      +.++.+||||||||++||||++.+|+++||||||++||+.....+.+.+.  ..+.+..+.+|.
T Consensus       474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~  537 (587)
T 3qf4_A          474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK  537 (587)
T ss_dssp             CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence            56778999999999999999999999999999999999999999999643  223344444443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.76  E-value=1.1e-18  Score=130.86  Aligned_cols=50  Identities=16%  Similarity=0.249  Sum_probs=45.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..+.+||||||||++||||++.+|++++|||||++||+.....+.+.+.
T Consensus       475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~  524 (582)
T 3b5x_A          475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD  524 (582)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999998643

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.75  E-value=1.5e-18  Score=130.20  Aligned_cols=62  Identities=23%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCc
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGI   74 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~   74 (79)
                      .++.+||||||||++||||++.+|+++||||||++||+.....+.+.+.  ..+.+..+.+|..
T Consensus       473 ~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l  536 (578)
T 4a82_A          473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL  536 (578)
T ss_dssp             GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSG
T ss_pred             cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence            4456899999999999999999999999999999999999999988653  2234444455543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.74  E-value=5e-18  Score=127.92  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      .+||||||||++||||++.+|+++||||||++||+.....+.+.+.  ..+.+..+.+|.
T Consensus       490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~  549 (598)
T 3qf4_B          490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR  549 (598)
T ss_dssp             TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            7899999999999999999999999999999999999999988643  223444444443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.72  E-value=4.7e-18  Score=134.90  Aligned_cols=66  Identities=26%  Similarity=0.202  Sum_probs=57.0

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      +..++++++||||||||++|||||+.+|++|||||||++||+..+..+.+++...+.+..+.+|+.
T Consensus       540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl  605 (986)
T 2iw3_A          540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDS  605 (986)
T ss_dssp             HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            467899999999999999999999999999999999999999999999997655445555556543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.71  E-value=1.2e-17  Score=131.72  Aligned_cols=50  Identities=14%  Similarity=0.234  Sum_probs=46.2

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+|||+|||+|+.+|   +++||||||+|||+..+..+++.+
T Consensus       799 lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL  851 (916)
T 3pih_A          799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVL  851 (916)
T ss_dssp             TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            47899999999999999999999875   799999999999999999999953

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.70  E-value=1.1e-17  Score=131.94  Aligned_cols=61  Identities=13%  Similarity=0.234  Sum_probs=52.2

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++++.+|||||+|||+|||+|+.+|+  ++||||||+|||+.....++++      +..+.+.|.|++
T Consensus       458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~------L~~L~~~G~Tvi  520 (916)
T 3pih_A          458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKT------LKKLRDLGNTVI  520 (916)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHH------HHHTTTTTCEEE
T ss_pred             ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHH------HHHHHhcCCEEE
Confidence            578999999999999999999999887  9999999999999999999995      444444455544

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.68  E-value=7.2e-17  Score=106.34  Aligned_cols=51  Identities=20%  Similarity=0.117  Sum_probs=45.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYK----NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~----~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+++.+||||||||++||++++.    +|+++||||||++||+.+...+.+++
T Consensus        57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l  111 (173)
T 3kta_B           57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLI  111 (173)
T ss_dssp             SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHH
Confidence            4567889999999999999999974    46999999999999999999999964

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.68  E-value=3.1e-17  Score=130.21  Aligned_cols=64  Identities=13%  Similarity=0.061  Sum_probs=54.9

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCc
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGI   74 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~   74 (79)
                      .++++++|||||||||+|||||+.+|++|||||||+|||+.....+.+.+.+.+....+.+|+.
T Consensus       895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~  958 (986)
T 2iw3_A          895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA  958 (986)
T ss_dssp             HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCH
T ss_pred             cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCH
Confidence            5788999999999999999999999999999999999999999999997654444455556653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.68  E-value=5.7e-17  Score=114.64  Aligned_cols=51  Identities=14%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             HhccCcCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKN------LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrq------rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|      |+++|++++.+|+++||||||++||+..+..+.+++
T Consensus       241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l  297 (339)
T 3qkt_A          241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM  297 (339)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            357889999999999      678888888999999999999999999999999864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.67  E-value=7.5e-17  Score=127.88  Aligned_cols=51  Identities=12%  Similarity=0.239  Sum_probs=47.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p---~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||||+|||+||++|+.+|   +++||||||+|||+..+..+++++
T Consensus       838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL  891 (972)
T 2r6f_A          838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL  891 (972)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            457899999999999999999999865   999999999999999999999953

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.66  E-value=1.2e-16  Score=112.17  Aligned_cols=51  Identities=18%  Similarity=0.126  Sum_probs=46.4

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+.++.+||+||+||++||++|+    .+|+++||||||++||+..+..+++++.
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~  267 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLK  267 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHH
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            56778999999999999999997    5789999999999999999999999653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.66  E-value=6.7e-17  Score=126.68  Aligned_cols=50  Identities=10%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~---p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++.+|||||+|||+||++|+.+   |+++||||||+|||+..+..+++++
T Consensus       724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL  776 (842)
T 2vf7_A          724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQL  776 (842)
T ss_dssp             TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999996   7999999999999999999999953

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.66  E-value=1.6e-16  Score=128.00  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      ..+.+|||||||||+||||++.+|+++||||||++||++....+.+.+.  ..+.+..+.+|.
T Consensus       522 ~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~  584 (1284)
T 3g5u_A          522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR  584 (1284)
T ss_dssp             SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSC
T ss_pred             CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            4566899999999999999999999999999999999999888887542  223344444443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.65  E-value=9.1e-17  Score=127.43  Aligned_cols=62  Identities=13%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .++++.+|||||+|||+||++|..+|  +++||||||++||+.....+++      .+..+.+.|.|||+
T Consensus       498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~------~L~~Lr~~G~TVIv  561 (972)
T 2r6f_A          498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA------TLKSMRDLGNTLIV  561 (972)
T ss_dssp             SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH------HHHHHHTTTCEEEE
T ss_pred             cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH------HHHHHHhCCCEEEE
Confidence            58899999999999999999999985  9999999999999999999999      45555555666554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.65  E-value=1.3e-16  Score=128.44  Aligned_cols=59  Identities=22%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      ..+|||||||||+|||||+.+|+++||||||++||+.....+.+.+.  ..+.+..+.+|.
T Consensus      1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~ 1229 (1284)
T 3g5u_A         1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229 (1284)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSC
T ss_pred             CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence            46899999999999999999999999999999999999999988653  223444444444

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.65  E-value=2.6e-16  Score=112.32  Aligned_cols=44  Identities=7%  Similarity=-0.041  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          18 KKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      |||||+|||+||++|+.+|  ++|||||||++||+..+..+.+.+.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~  341 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLS  341 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            5999999999999999999  9999999999999999999999643

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.64  E-value=1.4e-16  Score=124.82  Aligned_cols=61  Identities=16%  Similarity=0.285  Sum_probs=52.6

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      .++++.+|||||+|||+||++|+.+|  .++||||||++||+.....+++.      +..+.+.|.|+|
T Consensus       373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~------l~~L~~~G~TVI  435 (842)
T 2vf7_A          373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA------LENLKRGGNSLF  435 (842)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH------HHHHHTTTCEEE
T ss_pred             ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH------HHHHHHcCCEEE
Confidence            58899999999999999999999999  59999999999999999999994      444545555554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.62  E-value=2.9e-16  Score=126.73  Aligned_cols=61  Identities=21%  Similarity=0.252  Sum_probs=48.4

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      ....+||||||||++||||++.+|+++||||||++||++....+.+.+.  ..+.+..+.+|.
T Consensus       550 e~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr  612 (1321)
T 4f4c_A          550 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR  612 (1321)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence            3456899999999999999999999999999999999998777777543  234444444543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.61  E-value=4.1e-16  Score=115.50  Aligned_cols=50  Identities=6%  Similarity=-0.059  Sum_probs=46.4

Q ss_pred             hccCcCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKK-KKKKKNLLDIFKAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~L-SgGqrqrl~iaral~~~p--~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+++.+| ||||+|||+||++++.+|  +++||||||+|||+.....+.+++
T Consensus       390 ~~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l  442 (517)
T 4ad8_A          390 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQL  442 (517)
T ss_dssp             CCCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHH
T ss_pred             CcccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence            35678898 999999999999999999  999999999999999999999964

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.61  E-value=4.9e-16  Score=125.45  Aligned_cols=46  Identities=28%  Similarity=0.319  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+||||||||++|||||+.+|+|+||||||++||+++...+.+.+.
T Consensus      1216 ~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~ 1261 (1321)
T 4f4c_A         1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD 1261 (1321)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHT
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999988654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.59  E-value=4.2e-16  Score=102.27  Aligned_cols=55  Identities=4%  Similarity=-0.021  Sum_probs=49.3

Q ss_pred             HhccCcCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHhhhcC
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKA-----VYKNADIYLLDD--PLSAVDMHVGKHLFEDCISGG   64 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iara-----l~~~p~llllDE--Pt~~lD~~~~~~i~~~~~~~~   64 (79)
                      ..++++.+|||||+||++||+|     ++.+|++++|||  ||+++|+.....+.+.+.+.+
T Consensus        69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~  130 (178)
T 1ye8_A           69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPN  130 (178)
T ss_dssp             EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTT
T ss_pred             cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCC
Confidence            4577888999999999999996     999999999999  999999999999999765433

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.55  E-value=6e-16  Score=99.98  Aligned_cols=40  Identities=10%  Similarity=0.071  Sum_probs=36.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVG   53 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~   53 (79)
                      .....|+||+||++|||+++.+|++++|||||++||+.++
T Consensus        80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~  119 (171)
T 4gp7_A           80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK  119 (171)
T ss_dssp             SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence            3456799999999999999999999999999999999933

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.53  E-value=1.4e-14  Score=104.85  Aligned_cols=50  Identities=12%  Similarity=0.080  Sum_probs=45.2

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~----~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..++..|||||+|+++||++|+    .+|+++|||||+++||+..+..+.+++.
T Consensus       328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~  381 (430)
T 1w1w_A          328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR  381 (430)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred             ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHH
Confidence            4567789999999999999999    5799999999999999999999999653

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.52  E-value=6.4e-15  Score=106.14  Aligned_cols=51  Identities=14%  Similarity=0.098  Sum_probs=46.8

Q ss_pred             hccCcC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          11 KKKKKK-KKKKKKKNLLDIFKAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        11 ~~~~~~-~LSgGqrqrl~iaral~---------~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .+.++. .|||||+|+++||++|+         .+|+++||||||++||+..+..+++.+.
T Consensus       258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~  318 (359)
T 2o5v_A          258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAA  318 (359)
T ss_dssp             TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHH
T ss_pred             CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            356777 89999999999999999         8999999999999999999999999754

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.46  E-value=1.2e-13  Score=98.54  Aligned_cols=49  Identities=18%  Similarity=0.148  Sum_probs=44.2

Q ss_pred             cCcCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          13 KKKKKKKKKKKNLL------DIFKAVYKN-ADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        13 ~~~~~LSgGqrqrl------~iaral~~~-p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .++..|||||+||+      ++|++++.+ |+++||||||++||+..+..+.+.+.
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~  331 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFR  331 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHH
Confidence            56789999999988      567899999 99999999999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.1e-13  Score=102.41  Aligned_cols=47  Identities=13%  Similarity=0.080  Sum_probs=41.9

Q ss_pred             cCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHhhh
Q psy1505          15 KKKKKKKKKNLLDIFKA--VYKNADI----YLLDD-PLSAVDMHVGKHLFEDCIS   62 (79)
Q Consensus        15 ~~~LSgGqrqrl~iara--l~~~p~l----lllDE-Pt~~lD~~~~~~i~~~~~~   62 (79)
                      +.+|||||+|||+||||  |+.+|++    +|||| ||++||+. ...+.+++..
T Consensus       233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~  286 (460)
T 2npi_A          233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK  286 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence            77999999999999999  9999999    99999 99999999 6666665443

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.23  E-value=1.4e-13  Score=92.45  Aligned_cols=35  Identities=11%  Similarity=0.066  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          21 KKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        21 Gqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ||+|||+|||||+.+|+++||||||++    .+..+.++
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~  142 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMF  142 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence            999999999999999999999999999    56666664

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.21  E-value=4.4e-12  Score=94.03  Aligned_cols=61  Identities=8%  Similarity=-0.103  Sum_probs=50.8

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMH-----VGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~-----~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      ..+.+|.+||+||+|++.+|+++..+|+++|+| ||++||..     .+..+.++      +..+.+.|.+++
T Consensus       346 ~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~l------l~~l~~~g~tvi  411 (525)
T 1tf7_A          346 IVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGV------TGYAKQEEITGL  411 (525)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHH------HHHHHHTTCEEE
T ss_pred             EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHH------HHHHHhCCCEEE
Confidence            456788999999999999999999999999999 99999999     88888884      444444455544

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.90  E-value=1.7e-09  Score=85.58  Aligned_cols=48  Identities=13%  Similarity=0.164  Sum_probs=38.7

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLF   57 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~   57 (79)
                      +.......++|+||+|++.|+++ +.+|+++|||||++|+|+.....+.
T Consensus       727 d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~  774 (918)
T 3thx_B          727 DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIA  774 (918)
T ss_dssp             -------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHH
T ss_pred             HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHH
Confidence            34556778999999999999999 7999999999999999999888776

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.87  E-value=3.3e-11  Score=88.29  Aligned_cols=43  Identities=21%  Similarity=0.218  Sum_probs=40.5

Q ss_pred             CCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          18 KKKK--KKNLLDIFKAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        18 LSgG--qrqrl~iaral~~----------~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ||+|  |+||++||+++..          +|+++++||||+|||+..+..+++.+
T Consensus       155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l  209 (413)
T 1tq4_A          155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI  209 (413)
T ss_dssp             EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence            9999  9999999999999          99999999999999999998888753

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.83  E-value=6.5e-09  Score=82.42  Aligned_cols=45  Identities=11%  Similarity=0.094  Sum_probs=35.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHL   56 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i   56 (79)
                      +.....+|+|+.++..+|+++  +.+|+++|||||++|+|+.....+
T Consensus       716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i  762 (934)
T 3thx_A          716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGL  762 (934)
T ss_dssp             -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHH
T ss_pred             hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHH
Confidence            456678999999999999999  999999999999999999988777

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.72  E-value=1.6e-10  Score=79.95  Aligned_cols=48  Identities=8%  Similarity=0.020  Sum_probs=40.9

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      ..+.+..+.+|||||+||+++|||++.   ++++|||+.+||+.....+..
T Consensus        89 ~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~  136 (270)
T 3sop_A           89 EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH  136 (270)
T ss_dssp             HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH
T ss_pred             HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH
Confidence            356677889999999999999999876   999999999999998554444

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.67  E-value=1.9e-08  Score=68.60  Aligned_cols=45  Identities=9%  Similarity=-0.006  Sum_probs=35.7

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS--AVDMHVG---KHLFE   58 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~--~lD~~~~---~~i~~   58 (79)
                      .+.++..||+|+.+++   ++++.+|+++++|||++  ++|+...   ..+++
T Consensus       112 ~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~  161 (279)
T 1nlf_A          112 IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG  161 (279)
T ss_dssp             TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHH
Confidence            4567899999997754   68888999999999999  8887433   55555

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.63  E-value=1.8e-10  Score=81.31  Aligned_cols=39  Identities=10%  Similarity=0.042  Sum_probs=36.1

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD   49 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD   49 (79)
                      .+.++.+|||||+||+++|++++.+|+++|+|||+..+|
T Consensus       170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d  208 (312)
T 3aez_A          170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT  208 (312)
T ss_dssp             SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred             ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence            346788999999999999999999999999999999986

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.57  E-value=6e-08  Score=77.47  Aligned_cols=46  Identities=7%  Similarity=-0.104  Sum_probs=36.3

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVG-KHLFE   58 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~-~~i~~   58 (79)
                      .....++|+++++ +++|++++.+|+++|||||++|+|+... ..+++
T Consensus       846 ~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~  892 (1022)
T 2o8b_B          846 MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANA  892 (1022)
T ss_dssp             ----CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHH
T ss_pred             hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHH
Confidence            3455678888876 9999999999999999999999999875 33455

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.55  E-value=1.6e-08  Score=65.12  Aligned_cols=48  Identities=10%  Similarity=0.062  Sum_probs=43.8

Q ss_pred             ccCcCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNL-LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        12 ~~~~~~LSgGqrqr-l~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      ..++..+|+||+|+ +..+++++.+|.++++||||+++|.....++++.
T Consensus       144 ~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~  192 (210)
T 1pui_A          144 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQK  192 (210)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHH
T ss_pred             EecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHH
Confidence            45677899999999 8999999999999999999999999999999985

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.54  E-value=4.8e-08  Score=76.07  Aligned_cols=61  Identities=11%  Similarity=0.025  Sum_probs=45.2

Q ss_pred             cCcCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHhhhcCcchhhhcCC
Q psy1505          13 KKKKKKKKKKKNLLDIFKAV--YKNADIYLLDDP---LSAVDMHVG-KHLFEDCISGGIIPMINSPG   73 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral--~~~p~llllDEP---t~~lD~~~~-~~i~~~~~~~~~~~~l~~~g   73 (79)
                      .....+|+|+++++.+++++  +.+|+++|||||   |+++|+... ..+.+.+.+.+.+..+++|.
T Consensus       631 ~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~  697 (765)
T 1ewq_A          631 DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY  697 (765)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            34456899999999999999  999999999999   999998875 46777554444444455554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.53  E-value=7.3e-09  Score=72.71  Aligned_cols=40  Identities=13%  Similarity=0.032  Sum_probs=35.5

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGK   54 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~   54 (79)
                      .++++.+||   +||++|||+++.+|+  +++|| ||+|+|+..+.
T Consensus       198 ~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~  239 (302)
T 3b9q_A          198 NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA  239 (302)
T ss_dssp             CHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred             hhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence            345677899   999999999999999  99999 99999998764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.49  E-value=1.9e-07  Score=63.90  Aligned_cols=45  Identities=16%  Similarity=0.149  Sum_probs=31.8

Q ss_pred             CcCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHH
Q psy1505          14 KKKKKKKKK-KNLLDIFKAVYKNADIYLLDDPLS---A---VDM-HVGKHLFED   59 (79)
Q Consensus        14 ~~~~LSgGq-rqrl~iaral~~~p~llllDEPt~---~---lD~-~~~~~i~~~   59 (79)
                      .+.++|.++ +|++. |+++..+|+++|+||||+   +   +|. .....+.+.
T Consensus       126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~  178 (296)
T 1cr0_A          126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK  178 (296)
T ss_dssp             CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence            346789998 66766 999999999999999999   4   344 455566663

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.49  E-value=4.6e-08  Score=69.24  Aligned_cols=27  Identities=11%  Similarity=-0.017  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy1505          20 KKKKNLLDIFKAVYKNADIYLLDDPLS   46 (79)
Q Consensus        20 gGqrqrl~iaral~~~p~llllDEPt~   46 (79)
                      |||+||++||+||..+|+++++|||++
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence            899999999999999999999999998

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.46  E-value=2.1e-08  Score=72.23  Aligned_cols=40  Identities=13%  Similarity=0.031  Sum_probs=35.6

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHVGKH   55 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~~~~   55 (79)
                      ++++.+||   +||++|||+++.+|+  +++|| ||+|+|+..+..
T Consensus       256 ~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~  297 (359)
T 2og2_A          256 YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR  297 (359)
T ss_dssp             HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH
T ss_pred             hhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH
Confidence            45677888   999999999999999  99999 999999987653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.28  E-value=1.2e-06  Score=56.64  Aligned_cols=43  Identities=5%  Similarity=-0.145  Sum_probs=36.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHH
Q psy1505          17 KKKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAV--DMHVGKHLFED   59 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~--llllDEPt~~l--D~~~~~~i~~~   59 (79)
                      ..|.++.+....+.+...+|+  ++++||||+++  |+.....+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~  149 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY  149 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH
Confidence            448999888888888778999  99999999877  98877777774

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.24  E-value=1.4e-08  Score=70.82  Aligned_cols=42  Identities=2%  Similarity=-0.030  Sum_probs=35.4

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA-VDMHVGKHL   56 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~-lD~~~~~~i   56 (79)
                      .+.++.++|||+|||+.+||+++    ++++||||++ ||+.....+
T Consensus       107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l  149 (301)
T 2qnr_A          107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFM  149 (301)
T ss_dssp             HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHH
T ss_pred             HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHH
Confidence            34888999999999999998885    9999999984 999875333

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.16  E-value=1.9e-09  Score=71.77  Aligned_cols=44  Identities=9%  Similarity=-0.034  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          16 KKKKKKKKNLLDI-----FKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        16 ~~LSgGqrqrl~i-----aral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      .+|||||+||++|     +++++.+|++++|||||+++|......+.+.
T Consensus       121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~  169 (218)
T 1z6g_A          121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKR  169 (218)
T ss_dssp             ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence            4689999999999     8999999999999999999998766655553

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.13  E-value=1.6e-06  Score=61.60  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=30.4

Q ss_pred             CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHH
Q psy1505          19 KKKKKNLLDIFKAVY-------KNADIYLLDDPLSAVDMH   51 (79)
Q Consensus        19 SgGqrqrl~iaral~-------~~p~llllDEPt~~lD~~   51 (79)
                      |.++.|++.++++++       .+|+++|+||||+++|+.
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~  247 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  247 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence            678999999999998       689999999999999985

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.09  E-value=2.1e-07  Score=61.28  Aligned_cols=53  Identities=4%  Similarity=-0.056  Sum_probs=42.0

Q ss_pred             hccCcCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHhhhc
Q psy1505          11 KKKKKKKKKKKKKNLL-DIFK---AVYKNADIYLLDD--PLSAVDMHVGKHLFEDCISG   63 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl-~iar---al~~~p~llllDE--Pt~~lD~~~~~~i~~~~~~~   63 (79)
                      ...+...+|+||++++ ++++   |+..+|+++|+||  |+..+|+...+.+.+++...
T Consensus        77 v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~  135 (189)
T 2i3b_A           77 VGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP  135 (189)
T ss_dssp             SSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred             cceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence            3455667999999888 4444   5789999999999  89999999888888876533

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.05  E-value=2e-08  Score=71.03  Aligned_cols=37  Identities=11%  Similarity=0.103  Sum_probs=33.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +.+||||||||   |||++.+|++||    |++||+.....+..
T Consensus       198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~  234 (305)
T 2v9p_A          198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY  234 (305)
T ss_dssp             TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG
T ss_pred             ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH
Confidence            67999999999   999999999999    99999998877754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.04  E-value=6e-06  Score=53.23  Aligned_cols=38  Identities=8%  Similarity=0.056  Sum_probs=30.5

Q ss_pred             CcCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHH
Q psy1505          14 KKKKKKKKK--KNLLDIFKAVYKN-ADIYLLDDPLSAVDMH   51 (79)
Q Consensus        14 ~~~~LSgGq--rqrl~iaral~~~-p~llllDEPt~~lD~~   51 (79)
                      .+.++|+++  +++++.+++++.+ |+++++|||++.+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~  121 (220)
T 2cvh_A           81 ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE  121 (220)
T ss_dssp             EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred             EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence            445566664  5688888999886 9999999999999873

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.04  E-value=3.9e-06  Score=65.66  Aligned_cols=42  Identities=12%  Similarity=0.036  Sum_probs=29.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHL   56 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i   56 (79)
                      ...++|+++++...+ ...+.+|+++|||||++|+|+.....+
T Consensus       666 ~~stf~~e~~~~~~i-l~~a~~psLlLLDEp~~Gtd~~d~~~i  707 (800)
T 1wb9_A          666 GRSTFMVEMTETANI-LHNATEYSLVLMDEIGRGTSTYDGLSL  707 (800)
T ss_dssp             ----CHHHHHHHHHH-HHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred             hhhhhhHHHHHHHHH-HHhccCCCEEEEECCCCCCChhHHHHH
Confidence            345677777654444 445799999999999999998766654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.95  E-value=1e-05  Score=55.41  Aligned_cols=32  Identities=9%  Similarity=0.161  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        25 rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +++|+++|..+|+++++|||+   |+.....+++.
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~  119 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETALRA  119 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH
Confidence            899999999999999999999   98887666553

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.93  E-value=1.6e-07  Score=61.48  Aligned_cols=30  Identities=10%  Similarity=-0.068  Sum_probs=26.1

Q ss_pred             HHhcCCCEEEEeCCCCCC----CHHHHHHHHHHh
Q psy1505          31 AVYKNADIYLLDDPLSAV----DMHVGKHLFEDC   60 (79)
Q Consensus        31 al~~~p~llllDEPt~~l----D~~~~~~i~~~~   60 (79)
                      +|+.+|++++|||||+++    |+..+..+.+.+
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l  170 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTAR  170 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            889999999999999998    777888887753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.83  E-value=3.6e-06  Score=62.27  Aligned_cols=48  Identities=19%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             HHHHHHHHh-cCCCEEEEeCCCCC-----CCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505          25 LLDIFKAVY-KNADIYLLDDPLSA-----VDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus        25 rl~iaral~-~~p~llllDEPt~~-----lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .-.+...|. .+|+++++||||+.     +|+..+..++++      +..+++.|.|+++
T Consensus       127 ~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~l------l~~l~~~g~tvl~  180 (525)
T 1tf7_A          127 IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRL------VARLKQIGATTVM  180 (525)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHH------HHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHH------HHHHHHCCCEEEE
Confidence            344455553 57999999999984     588999999994      4444445555543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.82  E-value=1.2e-07  Score=63.37  Aligned_cols=44  Identities=7%  Similarity=0.089  Sum_probs=36.4

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAV-YKNADIYLLD----DPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral-~~~p~llllD----EPt~~lD~~~~~~i~~~~   60 (79)
                      ..++++.+|||    |+   +++ +.+|+++++|    |||+++|+.....+.+.+
T Consensus       145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l  193 (246)
T 2bbw_A          145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARL  193 (246)
T ss_dssp             HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHH
T ss_pred             HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHH
Confidence            45778889999    55   677 8999999999    999999998777776643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.77  E-value=2.6e-07  Score=64.41  Aligned_cols=38  Identities=16%  Similarity=0.105  Sum_probs=32.8

Q ss_pred             ccCcCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHH
Q psy1505          12 KKKKKKKKKKKKNLLDIF--KAVYKNADIYLLDDPLSAVDMH   51 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~ia--ral~~~p~llllDEPt~~lD~~   51 (79)
                      ..+..++||||.||+.+|  +++  +|+|+|+|||++++|+.
T Consensus       129 p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          129 PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred             ccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence            345678999999999987  555  89999999999999974

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.62  E-value=2.4e-05  Score=50.61  Aligned_cols=34  Identities=12%  Similarity=0.106  Sum_probs=24.9

Q ss_pred             CCHHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHH
Q psy1505          18 KKKKKK-NLLDIFKAVYK-------NADIYLLDDPLSAVDMH   51 (79)
Q Consensus        18 LSgGqr-qrl~iaral~~-------~p~llllDEPt~~lD~~   51 (79)
                      .+++++ +.+..+..++.       +|+++++|||++++|+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~  141 (231)
T 4a74_A          100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  141 (231)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence            444443 34666666655       89999999999999883

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.59  E-value=7.6e-09  Score=67.35  Aligned_cols=50  Identities=10%  Similarity=0.050  Sum_probs=41.9

Q ss_pred             HhccCcCCCCHHHH----HHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHH
Q psy1505          10 KKKKKKKKKKKKKK----NLLDIFKAVYKNADIYLLDDPLSA-------VDMHVGKHLFED   59 (79)
Q Consensus        10 ~~~~~~~~LSgGqr----qrl~iaral~~~p~llllDEPt~~-------lD~~~~~~i~~~   59 (79)
                      ..+.++.++|+|++    |+++++++++.+|.++++||||++       ||+.....+.+.
T Consensus        82 ~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~  142 (211)
T 3asz_A           82 PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR  142 (211)
T ss_dssp             CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred             CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence            34567889999964    688999999999999999999999       898777766664

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.51  E-value=0.00013  Score=52.10  Aligned_cols=30  Identities=17%  Similarity=0.247  Sum_probs=25.4

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          27 DIFKAVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        27 ~iaral~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +|++||..+|+++++|||+   |++....+.+.
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~  217 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALTA  217 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH
Confidence            9999999999999999999   77766655553

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.51  E-value=2.3e-06  Score=57.33  Aligned_cols=40  Identities=18%  Similarity=0.076  Sum_probs=34.8

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMH   51 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~   51 (79)
                      .+.++.+||+||+||+++ ++++.+|+++|+|||....+..
T Consensus       110 ~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~  149 (245)
T 2jeo_A          110 KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE  149 (245)
T ss_dssp             CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred             CCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence            456788999999999988 5888899999999999888765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.51  E-value=0.00019  Score=45.38  Aligned_cols=28  Identities=18%  Similarity=0.025  Sum_probs=24.1

Q ss_pred             hcCCCEEEEeCCCC-CCCHHHHHHHHHHh
Q psy1505          33 YKNADIYLLDDPLS-AVDMHVGKHLFEDC   60 (79)
Q Consensus        33 ~~~p~llllDEPt~-~lD~~~~~~i~~~~   60 (79)
                      +.+|+++++|||++ ++|+..+..+++++
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll  126 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYII  126 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence            46899999999985 89999998888853

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.13  E-value=2.9e-05  Score=56.76  Aligned_cols=41  Identities=5%  Similarity=-0.096  Sum_probs=31.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHH
Q psy1505          17 KKKKKKKNLLDIFKAVYKNAD---IYLLDDPL-SAVDMHVGKHLF   57 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~---llllDEPt-~~lD~~~~~~i~   57 (79)
                      .++.+++|+++|||+++.+|+   ++++|||| .++|+.....+.
T Consensus       118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk  162 (418)
T 2qag_C          118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK  162 (418)
T ss_dssp             HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHH
Confidence            356677889999999999999   99999999 699998754433

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.09  E-value=0.00019  Score=51.11  Aligned_cols=38  Identities=8%  Similarity=-0.039  Sum_probs=33.5

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ..+..||+|| |++++|   +.+|++      |+|+|+.....+.+++
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ll  204 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLL  204 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHH
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHH
Confidence            5688999999 899999   578877      9999999999999964

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.08  E-value=2.2e-05  Score=55.42  Aligned_cols=47  Identities=9%  Similarity=-0.128  Sum_probs=33.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHh
Q psy1505          14 KKKKKKKKKKNLLDIFKAVY-KNADIYLLDD---PL------SAVDMHVGKHLFEDC   60 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~-~~p~llllDE---Pt------~~lD~~~~~~i~~~~   60 (79)
                      .+..+|+|++++..+++++. .+|++++|||   |+      .++|+..+..+.+.+
T Consensus       255 ~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l  311 (365)
T 1lw7_A          255 QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL  311 (365)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence            34456778888888888774 6999999999   65      588998888888853

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.04  E-value=0.00041  Score=43.54  Aligned_cols=28  Identities=14%  Similarity=0.045  Sum_probs=21.7

Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy1505          31 AVYKNADIYLLDDPLSAVDMHVGKHLFED   59 (79)
Q Consensus        31 al~~~p~llllDEPt~~lD~~~~~~i~~~   59 (79)
                      +++.+|+++++|||+. ++...+..++++
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~l  106 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSI  106 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHH
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHH
Confidence            3467899999999998 555557777775

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.02  E-value=0.00011  Score=53.63  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=33.3

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVG   53 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~   53 (79)
                      +.++.+||+|++|+++++++|...|.++++    +.+|....
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~  284 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE  284 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred             cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence            456678999999999999999999999999    88887654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.75  E-value=0.00027  Score=49.81  Aligned_cols=29  Identities=7%  Similarity=0.125  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy1505          17 KKKKKKKNLLDIFKAV---YK--NADIYLLDDPL   45 (79)
Q Consensus        17 ~LSgGqrqrl~iaral---~~--~p~llllDEPt   45 (79)
                      .+|+|++||.+|+++|   ..  ++.++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            4899999999999999   66  89999999997

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.70  E-value=0.0015  Score=44.89  Aligned_cols=29  Identities=7%  Similarity=0.036  Sum_probs=23.5

Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          32 VYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        32 l~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..+|+++|+|||++ ||+.....+++.+.
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le  159 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTME  159 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence            456899999999999 99999998888654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.67  E-value=8.4e-06  Score=52.91  Aligned_cols=22  Identities=14%  Similarity=0.039  Sum_probs=20.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCE
Q psy1505          17 KKKKKKKNLLDIFKAVYKNADI   38 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~l   38 (79)
                      .|||||+||++||||++.+|++
T Consensus       103 glSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGG
T ss_pred             CcCCCCCcEEEEEecccCCCcc
Confidence            4999999999999999999976

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.62  E-value=0.0026  Score=47.38  Aligned_cols=56  Identities=13%  Similarity=0.097  Sum_probs=41.6

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHH--hc---------------CCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcc
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAV--YK---------------NADIYLLDDPLSAVDMHVGKHLFEDCISGGII   66 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral--~~---------------~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~   66 (79)
                      +.++..+.+||||.|-..+|.+.  +.               .-.++++||. +-+|.......+++|.+-|+-
T Consensus       372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQ  444 (483)
T 3euj_A          372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQ  444 (483)
T ss_dssp             EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCE
T ss_pred             eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCE
Confidence            44556889999999965444432  22               2368999999 999999999999987655543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.60  E-value=0.00098  Score=48.81  Aligned_cols=36  Identities=6%  Similarity=-0.129  Sum_probs=32.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          15 KKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..||+|| ||++||   +.+|++      |+|+|+.....+.+++
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll  291 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALV  291 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHH
Confidence            56799999 999999   788888      9999999999999964

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.55  E-value=0.0073  Score=41.73  Aligned_cols=41  Identities=17%  Similarity=0.023  Sum_probs=33.8

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHH
Q psy1505          19 KKKKKNLLDIFKAVYKNADIYLLDDP-LSAVDMHVGKHLFED   59 (79)
Q Consensus        19 SgGqrqrl~iaral~~~p~llllDEP-t~~lD~~~~~~i~~~   59 (79)
                      +..+-++.+++.+...+++++|+||| +.++|......+...
T Consensus       164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~  205 (295)
T 1ls1_A          164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL  205 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHH
Confidence            34455788899988899999999999 999999888777653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.31  E-value=0.0053  Score=43.76  Aligned_cols=31  Identities=10%  Similarity=0.170  Sum_probs=25.6

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        25 rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      +.+|+++|..+|+++++|||+   |+.....+++
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~  229 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVETALR  229 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHH
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHH
Confidence            468999999999999999999   7776555444

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.30  E-value=0.00055  Score=47.85  Aligned_cols=34  Identities=21%  Similarity=0.089  Sum_probs=26.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHH
Q psy1505          18 KKKKKKNLLDIFKAVYKNAD--IYLLDDPLSAVDMHV   52 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~--llllDEPt~~lD~~~   52 (79)
                      ++..++||++|||+++.+|+  ++.|| |+++.+...
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~  238 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE  238 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH
Confidence            34556899999999999999  66688 677765443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.29  E-value=0.0022  Score=48.50  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=23.6

Q ss_pred             hcCCCEEEEeCC------CCCCCHHHHHHHHHHh
Q psy1505          33 YKNADIYLLDDP------LSAVDMHVGKHLFEDC   60 (79)
Q Consensus        33 ~~~p~llllDEP------t~~lD~~~~~~i~~~~   60 (79)
                      ...|+++++|||      |+|+|+..+..+.+++
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li  177 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI  177 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHH
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHH
Confidence            356999999999      9999999998888864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.25  E-value=0.0074  Score=39.01  Aligned_cols=18  Identities=6%  Similarity=0.146  Sum_probs=15.0

Q ss_pred             cCCCEEEEeCCCCCCCHH
Q psy1505          34 KNADIYLLDDPLSAVDMH   51 (79)
Q Consensus        34 ~~p~llllDEPt~~lD~~   51 (79)
                      .+|+++++|||++.+|+.
T Consensus       118 ~~~~lliiD~~~~~~~~~  135 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTD  135 (243)
T ss_dssp             SCEEEEEEETSSGGGC--
T ss_pred             CCceEEEEeCchHHHHHH
Confidence            589999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.12  E-value=0.001  Score=41.93  Aligned_cols=41  Identities=12%  Similarity=0.027  Sum_probs=34.4

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +.++..+|+|++|++.++|++..+|+++        +|+.....+++.+
T Consensus       104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~  144 (191)
T 1zp6_A          104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF  144 (191)
T ss_dssp             CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence            4567789999999999999999999876        5888887777754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.10  E-value=0.00046  Score=48.07  Aligned_cols=26  Identities=4%  Similarity=0.019  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy1505          17 KKKKKKKNLLDIFKAVYKNADIYLLDDP   44 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~llllDEP   44 (79)
                      +||+||+||+..+++++++|+++  |||
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~  166 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA  166 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH
Confidence            79999999998888888999987  888

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.79  E-value=0.0047  Score=43.21  Aligned_cols=31  Identities=13%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy1505          16 KKKKKKKKNLL---DIFKAVYKNADIYLLDDPLS   46 (79)
Q Consensus        16 ~~LSgGqrqrl---~iaral~~~p~llllDEPt~   46 (79)
                      .++|+|+.+++   ++++++..+|+++|+|||..
T Consensus       164 ~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            46789999999   89999999999999999975

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.48  E-value=0.01  Score=43.57  Aligned_cols=52  Identities=15%  Similarity=0.104  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchh-hhcCCceee
Q psy1505          17 KKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPM-INSPGIGLI   77 (79)
Q Consensus        17 ~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~-l~~~g~~~~   77 (79)
                      .|+..+   ++|+++|..++.+|++|+|+..|.+.....+++.      +.. +..+|++++
T Consensus       161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~------I~~~L~~~gi~I~  213 (427)
T 2qag_B          161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIK------ITSELVSNGVQIY  213 (427)
T ss_dssp             --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHH------HHHHHBTTBCCCC
T ss_pred             CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHH------HHHHHHHcCCcEE
Confidence            455555   8999999999999999999999999998888884      333 555666654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.32  E-value=0.0049  Score=47.84  Aligned_cols=47  Identities=11%  Similarity=-0.022  Sum_probs=39.3

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHH
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS-AVDMHVGKHLFE   58 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~-~lD~~~~~~i~~   58 (79)
                      +..+.-+|+|+.++..++..++.+++++|+|||.. ++|......++.
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~  232 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLK  232 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHH
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHH
Confidence            45566789999999999999999999999999996 898776555544

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.25  E-value=0.027  Score=39.91  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhcC--CCEEEEeCCCCCC
Q psy1505          23 KNLLDIFKAVYKN--ADIYLLDDPLSAV   48 (79)
Q Consensus        23 rqrl~iaral~~~--p~llllDEPt~~l   48 (79)
                      .+.+.++++++.+  |+++++|||++.+
T Consensus       125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          125 EQALEIADMLVRSGALDIIVIDSVAALV  152 (349)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence            3456788888654  9999999999988

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.97  E-value=0.012  Score=37.18  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          25 LLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        25 rl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+.+|++++.+|.+.++|  |+++|.....++++.+
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l  186 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTI  186 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHH
Confidence            367899999999999999  9999999999999853

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.71  E-value=0.048  Score=38.15  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=37.5

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLD-DPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllD-EPt~~lD~~~~~~i~~~~   60 (79)
                      ..+.++.++|+|++|.+. +.+...++-++++| +|..++|......+++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i  274 (357)
T 2e87_A          224 LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV  274 (357)
T ss_dssp             TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHH
T ss_pred             ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHH
Confidence            345567789999988776 44444666778899 999999998887777643

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.54  E-value=0.034  Score=39.51  Aligned_cols=34  Identities=6%  Similarity=0.127  Sum_probs=30.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVD   49 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD   49 (79)
                      +.||.++.+++..|...+.+++++|.|+|...++
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~  141 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE  141 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence            5799999999999999999999999999976543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.16  E-value=0.046  Score=39.57  Aligned_cols=18  Identities=6%  Similarity=0.165  Sum_probs=14.8

Q ss_pred             cCCCEEEEeCCCCCCCHH
Q psy1505          34 KNADIYLLDDPLSAVDMH   51 (79)
Q Consensus        34 ~~p~llllDEPt~~lD~~   51 (79)
                      .+|+++++|||++.+++.
T Consensus       272 ~~~~llVIDs~t~~~~~~  289 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTD  289 (400)
T ss_dssp             SCEEEEEEETGGGGCC--
T ss_pred             cCCceEEecchhhhCchh
Confidence            579999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.90  E-value=0.076  Score=34.13  Aligned_cols=18  Identities=17%  Similarity=0.063  Sum_probs=15.1

Q ss_pred             cCCCEEEEeCCCCCC--CHH
Q psy1505          34 KNADIYLLDDPLSAV--DMH   51 (79)
Q Consensus        34 ~~p~llllDEPt~~l--D~~   51 (79)
                      .+|+++++|+|+..+  |+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~  146 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPA  146 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGG
T ss_pred             hCCCEEEECCchHhhcCCHH
Confidence            579999999999887  553

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.70  E-value=0.11  Score=38.47  Aligned_cols=26  Identities=12%  Similarity=-0.087  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy1505          20 KKKKNLLDIFKAVYKNADIYLLDDPL   45 (79)
Q Consensus        20 gGqrqrl~iaral~~~p~llllDEPt   45 (79)
                      ++++.|-.+++|....|.+|++||+-
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid  118 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEID  118 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechh
Confidence            67888889999999999999999993

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=92.74  E-value=0.25  Score=35.64  Aligned_cols=33  Identities=3%  Similarity=-0.044  Sum_probs=26.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC
Q psy1505          15 KKKKKKKKKNLLDIFKAVY--KNADIYLLDDPLSAVD   49 (79)
Q Consensus        15 ~~~LSgGqrqrl~iaral~--~~p~llllDEPt~~lD   49 (79)
                      ...+|.++.+  +.++.+.  .+|+++++|+++...+
T Consensus       293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~  327 (454)
T 2r6a_A          293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG  327 (454)
T ss_dssp             CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred             CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence            4578998876  5666665  6899999999998774

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.65  E-value=0.061  Score=33.86  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          26 LDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        26 l~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ...|++++.+|.+.++|  |+++|.....++++.+
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNI  162 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHH
Confidence            35688999999999999  9999999999988864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=92.44  E-value=0.00026  Score=48.47  Aligned_cols=50  Identities=8%  Similarity=-0.043  Sum_probs=41.0

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHhh
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLS------------AVDMHVGKHLFEDCI   61 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~------------~lD~~~~~~i~~~~~   61 (79)
                      ..++.+.+|||||+|++.|++|+.++|+++  ||++.            --|...+..+++.+.
T Consensus       130 ~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          130 VVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             HHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence            456677889999999999999999999975  99864            337888888888654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=91.84  E-value=0.031  Score=39.23  Aligned_cols=41  Identities=5%  Similarity=0.041  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          16 KKKKKKKKNLLDIFKAVYK------NADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~------~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++|+|++|++..+++++.      +|+++.    ++++|......+++.+
T Consensus       209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I  255 (337)
T 2qm8_A          209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI  255 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence            5689999999999999887      688876    9999999988888854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.24  E-value=0.057  Score=38.70  Aligned_cols=23  Identities=9%  Similarity=-0.091  Sum_probs=20.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHH
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAV   32 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral   32 (79)
                      ++.++++.+|| ||+||++||+++
T Consensus       306 ~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          306 KYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             hhcCCCcccCC-HHHHHHHHHhcC
Confidence            46788999999 999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=88.31  E-value=0.00054  Score=44.47  Aligned_cols=31  Identities=10%  Similarity=0.027  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHH-HHHhcCCCEEEEeCCCC
Q psy1505          16 KKKKKKKKNLLDIF-KAVYKNADIYLLDDPLS   46 (79)
Q Consensus        16 ~~LSgGqrqrl~ia-ral~~~p~llllDEPt~   46 (79)
                      ..+|+||+|+++++ ++++.++.++++|||.+
T Consensus       110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~  141 (208)
T 3c8u_A          110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW  141 (208)
T ss_dssp             TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG
T ss_pred             ccCCCCCceEEcCCCcEEEECCceeccCCchh
Confidence            35799999999998 88888888888999853

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=88.28  E-value=0.3  Score=33.64  Aligned_cols=31  Identities=10%  Similarity=-0.014  Sum_probs=21.8

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          24 NLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        24 qrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      -+.++++  +.+|+++|+|  |+|+|+.....+.+
T Consensus       173 l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~e  203 (296)
T 2px0_A          173 FQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDE  203 (296)
T ss_dssp             HHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHH
T ss_pred             HHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHH
Confidence            3455554  4899999999  88998765544443

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=87.89  E-value=0.069  Score=40.01  Aligned_cols=45  Identities=4%  Similarity=0.059  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +.+|+|++|++..++....++.++++||.-. |++..+..+++.+.
T Consensus       182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le  226 (604)
T 3k1j_A          182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ  226 (604)
T ss_dssp             --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred             CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence            6789999999999999999999999999887 79999999888765

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=84.61  E-value=1.1  Score=32.32  Aligned_cols=26  Identities=35%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             cCCCEEEEeCCCCCCCH-HHHHHHHHH
Q psy1505          34 KNADIYLLDDPLSAVDM-HVGKHLFED   59 (79)
Q Consensus        34 ~~p~llllDEPt~~lD~-~~~~~i~~~   59 (79)
                      .+|++|++||+....+. ..+..+++.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~  219 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHT  219 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHH
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHH
Confidence            38999999999876653 566667664

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=84.34  E-value=1.4  Score=30.21  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy1505          18 KKKKKKNLLDIFKAVYKNADIYLLDDPLSAV   48 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~llllDEPt~~l   48 (79)
                      ||.++.+++..|...+.++.+++.|+|...+
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~  164 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQSV  164 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence            8999999999999999999999999997543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=84.34  E-value=0.0051  Score=44.84  Aligned_cols=25  Identities=0%  Similarity=-0.110  Sum_probs=22.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYL   40 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~lll   40 (79)
                      .+.+|||||+||  |||+++.+|++..
T Consensus       290 ~~~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          290 ISSSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence            567899999999  9999999999876

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=83.47  E-value=0.0012  Score=47.20  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=28.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Q psy1505          18 KKKKKKNLLDIFKAVYKNADI--YLLDDPLSAVDMH   51 (79)
Q Consensus        18 LSgGqrqrl~iaral~~~p~l--lllDEPt~~lD~~   51 (79)
                      +|+|  ||+++++++..+|.+  +|+||.|+.+|..
T Consensus       284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~  317 (372)
T 2ewv_A          284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL  317 (372)
T ss_dssp             CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred             cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence            4788  889999999999999  9999999988854

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=83.25  E-value=0.018  Score=43.24  Aligned_cols=34  Identities=9%  Similarity=-0.007  Sum_probs=22.5

Q ss_pred             CCCHHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCH
Q psy1505          17 KKKKKKKNLL----------DIFKAVYKNAD-IYLLDDPLSAVDM   50 (79)
Q Consensus        17 ~LSgGqrqrl----------~iaral~~~p~-llllDEPt~~lD~   50 (79)
                      .+|+||+|+.          ++++++...|. ++++||++..++.
T Consensus       268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~  312 (512)
T 2ius_A          268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT  312 (512)
T ss_dssp             HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred             HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence            4566665542          24555667787 7889999988873

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=82.27  E-value=1.3  Score=29.37  Aligned_cols=31  Identities=16%  Similarity=0.007  Sum_probs=25.8

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy1505          19 KKKKKNLLDIFKAVYKNADIYLLDDPLSAVD   49 (79)
Q Consensus        19 SgGqrqrl~iaral~~~p~llllDEPt~~lD   49 (79)
                      ++++..+..+..+...+|.+|++||+....+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~  127 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLS  127 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence            4677788888888888999999999977654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=82.08  E-value=2.7  Score=27.49  Aligned_cols=28  Identities=14%  Similarity=0.182  Sum_probs=22.9

Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          29 FKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        29 aral~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      +..++..++++|||     ||+.....+.+.+.
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~  128 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP  128 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence            34455678999999     99999999999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	1e-04
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-04

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 23  KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 61
           +  + + +AVYK+AD+YLLD P   +D+   + +FE C+
Sbjct: 164 RARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 202

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 34.8 bits (80), Expect = 4e-04
 Identities = 8/36 (22%), Positives = 20/36 (55%)

Query: 23  KNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFE 58
           +  + I +A+ +++ I +LD+  SA+D    + +  
Sbjct: 158 RQRIAIARALLRDSPILILDEATSALDTESERAIQA 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.9
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.9
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.9
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.89
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.89
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.89
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.89
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.88
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.88
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.88
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.88
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.87
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.85
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.84
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.84
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.83
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.82
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.81
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.81
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.81
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.57
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.29
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.86
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.08
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.91
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.6
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.36
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.64
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	82.37
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	80.22

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=1.9e-24  Score=147.10  Aligned_cols=63  Identities=21%  Similarity=0.342  Sum_probs=54.2

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhh-cCCceeee
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMIN-SPGIGLIF   78 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~-~~g~~~~~   78 (79)
                      .++++|.+|||||+|||+|||||+.+|+++||||||++||+.++..++++      +..+. ++|.|+++
T Consensus       138 ~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~------l~~l~~~~g~tii~  201 (230)
T d1l2ta_         138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL------LKKLNEEDGKTVVV  201 (230)
T ss_dssp             GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH------HHHHHHTTCCEEEE
T ss_pred             hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHH------HHHHHHhhCCEEEE
Confidence            57889999999999999999999999999999999999999999999995      44443 33555543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.90  E-value=2.8e-24  Score=147.07  Aligned_cols=52  Identities=15%  Similarity=0.381  Sum_probs=49.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||+|||+|||||+++|+++||||||+|||+..+..+++++
T Consensus       131 ~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l  182 (240)
T d1g2912         131 ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL  182 (240)
T ss_dssp             GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999954

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.90  E-value=3.5e-24  Score=146.05  Aligned_cols=65  Identities=20%  Similarity=0.337  Sum_probs=56.2

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      .+++++++++|||||||||+|||||+++|++|||||||+|||+..+.+++++      +..+++.|.|+++
T Consensus       130 ~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~------i~~l~~~g~til~  194 (240)
T d1ji0a_         130 KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV------IQKINQEGTTILL  194 (240)
T ss_dssp             HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH------HHHHHHTTCCEEE
T ss_pred             HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHH------HHHHHhCCCEEEE
Confidence            3578899999999999999999999999999999999999999999999995      4555555555543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.3e-24  Score=146.68  Aligned_cols=52  Identities=21%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||+|||+|||||+.+|++||+||||++||+..+..+++++
T Consensus       132 ~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l  183 (240)
T d3dhwc1         132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL  183 (240)
T ss_dssp             TTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHH
T ss_pred             hhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHH
Confidence            5789999999999999999999999999999999999999999999999954

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=4e-24  Score=146.23  Aligned_cols=53  Identities=15%  Similarity=0.309  Sum_probs=50.3

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++++|.+|||||||||+|||||+.+|+++||||||+||||..+..+++++
T Consensus       127 ~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll  179 (239)
T d1v43a3         127 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI  179 (239)
T ss_dssp             GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999953

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.89  E-value=5.4e-24  Score=144.85  Aligned_cols=53  Identities=23%  Similarity=0.284  Sum_probs=50.1

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++.+++|.+|||||||||+|||||+++|+++||||||+|||+..+..+++++
T Consensus       118 ~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l  170 (229)
T d3d31a2         118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML  170 (229)
T ss_dssp             TTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred             hhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999953

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=5.1e-24  Score=145.99  Aligned_cols=53  Identities=15%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             hHHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           8 KKKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         8 ~~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++++|++|||||||||+|||||+++|++||+||||++||+..+..+++++
T Consensus       131 ~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i  183 (242)
T d1oxxk2         131 HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV  183 (242)
T ss_dssp             GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred             HhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999953

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=6.2e-24  Score=144.70  Aligned_cols=52  Identities=19%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||||||+|||||+++|+++||||||+|||+..+..+++++
T Consensus       122 ~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l  173 (232)
T d2awna2         122 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI  173 (232)
T ss_dssp             ------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999953

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=1.9e-23  Score=143.12  Aligned_cols=64  Identities=17%  Similarity=0.395  Sum_probs=55.1

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      +..++++++|||||||||+|||||+.+|+++||||||+|||+..+..++++      +..+++.|.|+++
T Consensus       142 ~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~------i~~l~~~g~til~  205 (254)
T d1g6ha_         142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH------VLELKAKGITFLI  205 (254)
T ss_dssp             GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH------HHHHHHTTCEEEE
T ss_pred             hhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHH------HHHHHHCCCEEEE
Confidence            566899999999999999999999999999999999999999999999995      4444445555543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=2.2e-23  Score=143.48  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             HhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505          10 KKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus        10 ~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      ..+++|.+|||||+|||+|||||+.+|+++||||||+|||+..+.+++++      +..++++|.|++
T Consensus       142 ~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l------l~~l~~~g~til  203 (258)
T d1b0ua_         142 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI------MQQLAEEGKTMV  203 (258)
T ss_dssp             HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH------HHHHHHTTCCEE
T ss_pred             hhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHh------hhhhcccCCceE
Confidence            45789999999999999999999999999999999999999999999995      444444455544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=8.4e-24  Score=144.79  Aligned_cols=52  Identities=25%  Similarity=0.393  Sum_probs=49.8

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      ++++++|.+|||||||||+|||||+++|+++||||||+|||+..+..+++.+
T Consensus       118 ~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i  169 (240)
T d2onka1         118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL  169 (240)
T ss_dssp             TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999954

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.3e-22  Score=138.07  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=54.6

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLI   77 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~   77 (79)
                      +..++++.+||||||||++|||||+++|+++||||||+|||+..+..++++      +..+..+|.|++
T Consensus       125 ~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~------i~~~~~~g~tii  187 (238)
T d1vpla_         125 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI------LKQASQEGLTIL  187 (238)
T ss_dssp             GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH------HHHHHHTTCEEE
T ss_pred             HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH------HHHHHhcCCEEE
Confidence            467889999999999999999999999999999999999999999999995      444444455554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=7.3e-22  Score=133.53  Aligned_cols=64  Identities=14%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             HHhccCcCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHhhhcCcchhhhcCCceeee
Q psy1505           9 KKKKKKKKKKKKKKKNLLDIFKAVYK-------NADIYLLDDPLSAVDMHVGKHLFEDCISGGIIPMINSPGIGLIF   78 (79)
Q Consensus         9 ~~~~~~~~~LSgGqrqrl~iaral~~-------~p~llllDEPt~~lD~~~~~~i~~~~~~~~~~~~l~~~g~~~~~   78 (79)
                      ++.++++.+|||||+|||+||||+++       +|+++||||||+|||+..+..++++      +..+.+.|.|+++
T Consensus       117 ~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~------i~~l~~~g~tii~  187 (231)
T d1l7vc_         117 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI------LSALCQQGLAIVM  187 (231)
T ss_dssp             TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHH------HHHHHHTTCEEEE
T ss_pred             hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHH------HHHHHhCCCEEEE
Confidence            46789999999999999999999997       7799999999999999999999994      4555555555553

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.9e-21  Score=133.05  Aligned_cols=50  Identities=14%  Similarity=0.199  Sum_probs=46.6

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .+..+.+|||||||||+|||||+.+|+++||||||++||+.....+++.+
T Consensus       145 i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l  194 (251)
T d1jj7a_         145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL  194 (251)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             HhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999964

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.5e-21  Score=133.71  Aligned_cols=65  Identities=12%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCce
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGIG   75 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~~   75 (79)
                      .+..+.+|||||||||+|||||+.+|+++||||||++||+.....+++.+.  ..+.+..+.+|...
T Consensus       146 ~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~  212 (253)
T d3b60a1         146 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS  212 (253)
T ss_dssp             CCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred             hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence            345678899999999999999999999999999999999999999999754  33455555566543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3e-21  Score=131.57  Aligned_cols=65  Identities=15%  Similarity=0.233  Sum_probs=54.4

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCce
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGIG   75 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~~   75 (79)
                      .+..+.+|||||+|||+|||||+.+|+++||||||++||+.....+++.+.  ..+.+..+.+|...
T Consensus       133 i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~  199 (241)
T d2pmka1         133 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS  199 (241)
T ss_dssp             CSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred             cCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            456678999999999999999999999999999999999999999999764  33455555566543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.82  E-value=2.4e-21  Score=131.98  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCC
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPG   73 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g   73 (79)
                      ..+.+|||||||||+|||||+.+|+++||||||++||+.....+++.+.  ..+.+..+.+|.
T Consensus       135 ~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~  197 (242)
T d1mv5a_         135 ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHR  197 (242)
T ss_dssp             TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3456799999999999999999999999999999999999998888643  224444444444

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=8.4e-21  Score=125.84  Aligned_cols=50  Identities=26%  Similarity=0.404  Sum_probs=46.2

Q ss_pred             hccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          11 KKKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        11 ~~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      .++++++|||||+||++||||++.+|+++||||||+|||+..+..+++.+
T Consensus       119 ~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l  168 (200)
T d1sgwa_         119 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI  168 (200)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred             cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999888853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.7e-20  Score=128.97  Aligned_cols=49  Identities=31%  Similarity=0.626  Sum_probs=44.9

Q ss_pred             ccCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDC   60 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~   60 (79)
                      +..+.+|||||||||+|||||+.+|+++||||||++||+.....+++.+
T Consensus       153 ~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~  201 (281)
T d1r0wa_         153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC  201 (281)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHC
T ss_pred             hhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHH
Confidence            4456789999999999999999999999999999999999999998853

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.81  E-value=1.7e-20  Score=128.70  Aligned_cols=63  Identities=22%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             cCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhh--hcCcchhhhcCCce
Q psy1505          13 KKKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGGIIPMINSPGIG   75 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~lD~~~~~~i~~~~~--~~~~~~~l~~~g~~   75 (79)
                      ..+.+|||||+|||+|||||+.+|+++||||||++||+.....+++.+.  ..+.+..+.+|...
T Consensus       150 ~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~  214 (255)
T d2hyda1         150 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS  214 (255)
T ss_dssp             GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred             CCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            4567899999999999999999999999999999999999999999763  33445555566543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=3e-09  Score=72.65  Aligned_cols=50  Identities=14%  Similarity=0.147  Sum_probs=40.7

Q ss_pred             ccCcCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          12 KKKKKKKKKKKKNLLDIFKAV----YKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        12 ~~~~~~LSgGqrqrl~iaral----~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      ..+...|||||+.++++|-.+    ..++++++||||+++||+..+..+.+++.
T Consensus       327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~  380 (427)
T d1w1wa_         327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR  380 (427)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred             hhhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            345578999999998876543    45678999999999999999999998753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.08  E-value=1.3e-06  Score=53.28  Aligned_cols=45  Identities=4%  Similarity=-0.153  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC--CHHHHHHHHHHh
Q psy1505          16 KKKKKKKKNLLDIFKAVYKNADIYLLDDPLSAV--DMHVGKHLFEDC   60 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral~~~p~llllDEPt~~l--D~~~~~~i~~~~   60 (79)
                      .++|+|+.++.++++++..+|+++++|||....  +......+.+.+
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l  126 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM  126 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHh
Confidence            458999999999999999999999999985543  444555555543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=8.4e-06  Score=53.57  Aligned_cols=49  Identities=18%  Similarity=0.106  Sum_probs=40.8

Q ss_pred             cCcCCCCHHHHHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHHhh
Q psy1505          13 KKKKKKKKKKKNLLDIFKA----VYKNADIYLLDDPLSAVDMHVGKHLFEDCI   61 (79)
Q Consensus        13 ~~~~~LSgGqrqrl~iara----l~~~p~llllDEPt~~lD~~~~~~i~~~~~   61 (79)
                      .....+|+|+++.+.++..    ....|.++++|||-++|+|.....+.+.+.
T Consensus       215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~  267 (308)
T d1e69a_         215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLK  267 (308)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHH
T ss_pred             chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHH
Confidence            4577899999999877664    344579999999999999999999988764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.36  E-value=0.13  Score=32.88  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH
Q psy1505          16 KKKKKKKKNLLDIFKAV--YKNADIYLLDDPLSAVDMHVGKHLFE   58 (79)
Q Consensus        16 ~~LSgGqrqrl~iaral--~~~p~llllDEPt~~lD~~~~~~i~~   58 (79)
                      ..+|.=+...-.+...+  +.+..++|+||+..|-++.....+..
T Consensus        93 ~~~StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~  137 (224)
T d1ewqa2          93 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIAT  137 (224)
T ss_dssp             -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHH
T ss_pred             CCccHHHHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHH
Confidence            34454444444444444  45678999999999999987765544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=0.42  Score=30.38  Aligned_cols=25  Identities=16%  Similarity=0.097  Sum_probs=20.8

Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHH
Q psy1505          33 YKNADIYLLDDPLSAVDMHVGKHLF   57 (79)
Q Consensus        33 ~~~p~llllDEPt~~lD~~~~~~i~   57 (79)
                      +.+..++|+||+..|-++.....+.
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~  142 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLA  142 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHH
T ss_pred             cccccEEeecccccCCChhhhhHHH
Confidence            5667899999999999998776653

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=82.37  E-value=0.24  Score=28.43  Aligned_cols=34  Identities=9%  Similarity=0.150  Sum_probs=28.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA   47 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~   47 (79)
                      -|...+..|||.+.=|.-.+.=..+-|++|||++
T Consensus        99 VPa~f~~~qR~at~~Aa~~AGl~vv~li~EPtAA  132 (137)
T d1jcea1          99 VPIGITDVERRAILDAGLEAGASKVFLIEEPMAA  132 (137)
T ss_dssp             ECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHH
T ss_pred             eecccCHHHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence            3677899999999998888877888899999874

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.22  E-value=0.25  Score=29.86  Aligned_cols=34  Identities=6%  Similarity=0.046  Sum_probs=28.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy1505          14 KKKKKKKKKKNLLDIFKAVYKNADIYLLDDPLSA   47 (79)
Q Consensus        14 ~~~~LSgGqrqrl~iaral~~~p~llllDEPt~~   47 (79)
                      -|...|..||+.+.-|.-++.=..+=|++|||++
T Consensus       143 vPa~f~~~qr~~~~~Aa~~AGl~~~~li~EP~AA  176 (185)
T d1bupa1         143 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAA  176 (185)
T ss_dssp             ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHH
Confidence            3567899999999998888877778899999864