Psyllid ID: psy15064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKCPRAFAGRKNELAGRGLDKPDLS
Secondary Structure (PSIPRED)
cEEccccccccHHHHHHHHHHHcccccccEEEEEccccccccccEEEHHHHcccccHHHHHHccHHHHHHccccccccccccHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MILGTALrlmgfperlnrdlsvripaSMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSqeyeeggkgqvdrkcprafagrknelagrgldkpdls
Flexible Loop (DISEMBL)
MILGTALrlmgfperlnrdlsvriPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEyeeggkgqvdrkcprafagrknelagrgldkpdls
Low Complexity Region (SEG)
MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKCPRAFAGRKNELAGRGLDKPDLS
Disordered region (IsUnstruct)
*****ALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISS*************************************
Disordered Region (DISOPRED)
MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKCPRAFAGRKNELAG*GLDK****
Disordered Region (DISEMBL)
MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQE**********RKCPRAFAGRKNELAG*********
Disordered Region (DISPRO)
******LRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKCPRAFAGRKNELAGRGLD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKCPRAFAGRKNELAGRGLDKPDLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P86173	426	Actin-like protein 6B OS=	yes	N/A	0.794	0.190	0.641	4e-26
Q99MR0	426	Actin-like protein 6B OS=	yes	N/A	0.794	0.190	0.641	4e-26
A4FUX8	426	Actin-like protein 6B OS=	yes	N/A	0.794	0.190	0.641	4e-26
O94805	426	Actin-like protein 6B OS=	yes	N/A	0.794	0.190	0.641	4e-26
O96019	429	Actin-like protein 6A OS=	no	N/A	0.794	0.188	0.629	2e-25
Q9Z2N8	429	Actin-like protein 6A OS=	no	N/A	0.794	0.188	0.629	2e-25
Q4R333	429	Actin-like protein 6A OS=	N/A	N/A	0.794	0.188	0.629	2e-25
Q7SHR0	469	Actin-related protein 4 O	N/A	N/A	0.774	0.168	0.525	1e-17
Q84M92	441	Actin-related protein 4 O	yes	N/A	0.794	0.183	0.469	1e-17
Q4IPI4	471	Actin-related protein 4 O	yes	N/A	0.774	0.167	0.512	1e-17

>sp|P86173|ACL6B_RAT Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2

 Score =  116 bits (291), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct: 346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MWIS QEYEEGGK  V+RKCP
Sbjct: 406 MWISKQEYEEGGKQCVERKCP 426

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.
Rattus norvegicus (taxid: 10116)

>sp|Q99MR0|ACL6B_MOUSE Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct: 346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MWIS QEYEEGGK  V+RKCP
Sbjct: 406 MWISKQEYEEGGKQCVERKCP 426

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.

Mus musculus (taxid: 10090)

>sp|A4FUX8|ACL6B_BOVIN Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct: 346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MWIS QEYEEGGK  V+RKCP
Sbjct: 406 MWISKQEYEEGGKQCVERKCP 426

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.

Bos taurus (taxid: 9913)

>sp|O94805|ACL6B_HUMAN Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct: 346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MWIS QEYEEGGK  V+RKCP
Sbjct: 406 MWISKQEYEEGGKQCVERKCP 426

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.

Homo sapiens (taxid: 9606)

>sp|O96019|ACL6A_HUMAN Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    +  F +RLNR+LS + P SM+LKLI+ N + ERRF +WIGGSILAS+GTFQQ
Sbjct: 349 IVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQ 408

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MWIS QEYEEGGK  V+RKCP
Sbjct: 409 MWISKQEYEEGGKQCVERKCP 429

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for maximal ATPase activity of SMARCA4/BRG1/BAF190A and for association of the SMARCA4/BRG1/BAF190A containing remodeling complex BAF with chromatin/nuclear matrix. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Putative core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Homo sapiens (taxid: 9606)

>sp|Q9Z2N8|ACL6A_MOUSE Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    +  F +RLNR+LS + P SM+LKLI+ N + ERRF +WIGGSILAS+GTFQQ
Sbjct: 349 IVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQ 408

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MWIS QEYEEGGK  V+RKCP
Sbjct: 409 MWISKQEYEEGGKQCVERKCP 429

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for maximal ATPase activity of SMARCA4/BRG1/BAF190A and for association of the SMARCA4/BRG1/BAF190A containing remodeling complex BAF with chromatin/nuclear matrix. Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Mus musculus (taxid: 10090)

>sp|Q4R333|ACL6A_MACFA Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    +  F +RLNR+LS + P SM+LKLI+ N + ERRF +WIGGSILAS+GTFQQ
Sbjct: 349 IVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQ 408

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MWIS QEYEEGGK  V+RKCP
Sbjct: 409 MWISKQEYEEGGKQCVERKCP 429

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for maximal ATPase activity of SMARCA4/BRG1/BAF190A and for association of the SMARCA4/BRG1/BAF190A containing remodeling complex BAF with chromatin/nuclear matrix. Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Macaca fascicularis (taxid: 9541)

>sp|Q7SHR0|ARP4_NEUCR Actin-related protein 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=arp-4 PE=3 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 1/80 (1%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G+   L GF +RLN +L+   P  +K+K+ +A  + ERRFGAWIGGSILAS+GTF Q
Sbjct: 390 VVTGSTSLLNGFNDRLNHELAQMYPG-VKIKIHAAGLTTERRFGAWIGGSILASLGTFHQ 448

Query: 61  MWISSQEYEEGGKGQVDRKC 80
           MWIS +EY+E G G V+++C
Sbjct: 449 MWISRKEYDENGAGIVEKRC 468

Chromatin interaction component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Is required for NuA4 complex integrity. Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q84M92|ARP4_ARATH Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    +    ERL +DL    P S ++K++++  + ERRF  WIGGSILAS+G+FQQ
Sbjct: 361 LLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQ 420

Query: 61  MWISSQEYEEGGKGQVDRKCP 81
           MW S  EYEE G   + RKCP
Sbjct: 421 MWFSKSEYEEHGASYIQRKCP 441

Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4IPI4|ARP4_GIBZE Actin-related protein 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=ARP4 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 1/80 (1%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G+   + GF +RLN +L    P  +K+K+ +A  ++ERRFGAWIGGSILAS+GTF Q
Sbjct: 392 VVTGSTSLINGFNDRLNTELMAMYPG-LKIKIHAAGLTSERRFGAWIGGSILASLGTFHQ 450

Query: 61  MWISSQEYEEGGKGQVDRKC 80
           MWIS +EYEE G   V+++C
Sbjct: 451 MWISRKEYEENGPNVVEKRC 470

Chromatin interaction component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Is required for NuA4 complex integrity. Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
307202650	440	Actin-like protein 6A [Harpegnathos salt	0.715	0.165	0.890	9e-33
332030233	440	Actin-like protein 6A [Acromyrmex echina	0.715	0.165	0.876	1e-32
307168237	440	Actin-like protein 6A [Camponotus florid	0.715	0.165	0.876	2e-32
156542947	439	PREDICTED: actin-like protein 6A-like [N	0.715	0.166	0.863	2e-32
66523552	440	PREDICTED: brahma associated protein 55k	0.715	0.165	0.863	3e-32
383854559	440	PREDICTED: actin-like protein 6A-like [M	0.715	0.165	0.863	3e-32
350397811	440	PREDICTED: actin-like protein 6A-like is	0.715	0.165	0.863	3e-32
340724322	440	PREDICTED: actin-like protein 6A-like is	0.715	0.165	0.863	4e-32
156546458	439	PREDICTED: actin-like protein 6A-like is	0.715	0.166	0.849	4e-32
193676241	429	PREDICTED: actin-like protein 6A-like [A	0.715	0.170	0.849	7e-32

>gi|307202650|gb|EFN81970.1| Actin-like protein 6A [Harpegnathos saltator]

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLSVRIP SM+LKLISANG AERRFGAWIGGSILASIGTFQQMWISSQEY
Sbjct: 368 IQGFPERLNRDLSVRIPTSMRLKLISANGCAERRFGAWIGGSILASIGTFQQMWISSQEY 427

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 428 EESGKSQVERKCP 440

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030233|gb|EGI70016.1| Actin-like protein 6A [Acromyrmex echinatior]

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LKLISANG AERRFGAWIGGSILASIGTFQQMWISSQEY
Sbjct: 368 IQGFPERLNRDLSMRIPSSMRLKLISANGCAERRFGAWIGGSILASIGTFQQMWISSQEY 427

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 428 EESGKSQVERKCP 440

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168237|gb|EFN61463.1| Actin-like protein 6A [Camponotus floridanus]

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LKLISANG AERRFGAWIGGSILASIGTFQQMWISSQEY
Sbjct: 368 IQGFPERLNRDLSMRIPSSMRLKLISANGCAERRFGAWIGGSILASIGTFQQMWISSQEY 427

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 428 EESGKSQVERKCP 440

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542947|ref|XP_001601923.1| PREDICTED: actin-like protein 6A-like [Nasonia vitripennis]

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 69/73 (94%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LKLISANG AERRFG+WIGGSILASIGTFQQMWISSQEY
Sbjct: 367 IQGFPERLNRDLSMRIPSSMRLKLISANGCAERRFGSWIGGSILASIGTFQQMWISSQEY 426

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 427 EESGKSQVERKCP 439

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66523552|ref|XP_625202.1| PREDICTED: brahma associated protein 55kd [Apis mellifera]

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LKLIS NG AERRFGAWIGGSILASIGTFQQMWISSQEY
Sbjct: 368 IQGFPERLNRDLSMRIPSSMRLKLISVNGCAERRFGAWIGGSILASIGTFQQMWISSQEY 427

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 428 EESGKSQVERKCP 440

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854559|ref|XP_003702788.1| PREDICTED: actin-like protein 6A-like [Megachile rotundata]

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LKLIS NG AERRFGAWIGGSILASIGTFQQMWISSQEY
Sbjct: 368 IQGFPERLNRDLSMRIPSSMRLKLISVNGCAERRFGAWIGGSILASIGTFQQMWISSQEY 427

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 428 EESGKSQVERKCP 440

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397811|ref|XP_003484999.1| PREDICTED: actin-like protein 6A-like isoform 1 [Bombus impatiens] gi|350397814|ref|XP_003485000.1| PREDICTED: actin-like protein 6A-like isoform 2 [Bombus impatiens]

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LKLIS NG AERRFGAWIGGSILASIGTFQQMWISSQEY
Sbjct: 368 IQGFPERLNRDLSMRIPSSMRLKLISVNGCAERRFGAWIGGSILASIGTFQQMWISSQEY 427

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 428 EESGKSQVERKCP 440

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724322|ref|XP_003400531.1| PREDICTED: actin-like protein 6A-like isoform 1 [Bombus terrestris] gi|340724324|ref|XP_003400532.1| PREDICTED: actin-like protein 6A-like isoform 2 [Bombus terrestris]

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LKLIS NG AERRFGAWIGGSILASIGTFQQMWISSQEY
Sbjct: 368 IQGFPERLNRDLSMRIPSSMRLKLISVNGCAERRFGAWIGGSILASIGTFQQMWISSQEY 427

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 428 EESGKSQVERKCP 440

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546458|ref|XP_001607305.1| PREDICTED: actin-like protein 6A-like isoform 1 [Nasonia vitripennis] gi|345498382|ref|XP_003428217.1| PREDICTED: actin-like protein 6A-like isoform 2 [Nasonia vitripennis]

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/73 (84%), Positives = 69/73 (94%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           + GFPERLNRDLS+RIP+SM+LK+ISANG AERRFG+WIGGSILASIGTFQQMWISSQEY
Sbjct: 367 IQGFPERLNRDLSMRIPSSMRLKMISANGCAERRFGSWIGGSILASIGTFQQMWISSQEY 426

Query: 69  EEGGKGQVDRKCP 81
           EE GK QV+RKCP
Sbjct: 427 EESGKSQVERKCP 439

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193676241|ref|XP_001945563.1| PREDICTED: actin-like protein 6A-like [Acyrthosiphon pisum]

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/73 (84%), Positives = 67/73 (91%)

Query: 9   LMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           L GFPERLNRDLS RIPASM+LKLI+ NGS ERRFGAWIGGSILASIGTFQQMWIS QE+
Sbjct: 357 LQGFPERLNRDLSARIPASMRLKLIAPNGSTERRFGAWIGGSILASIGTFQQMWISHQEF 416

Query: 69  EEGGKGQVDRKCP 81
           +EGGK Q+DRKCP
Sbjct: 417 KEGGKSQIDRKCP 429

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0025716	425	Bap55 "Brahma associated prote	0.794	0.190	0.753	2.1e-29
ZFIN|ZDB-GENE-050522-191	426	actl6b "actin-like 6B" [Danio	0.794	0.190	0.666	2.3e-25
ZFIN|ZDB-GENE-020419-36	429	actl6a "actin-like 6A" [Danio	0.794	0.188	0.666	7.8e-25
UNIPROTKB|A4FUX8	426	ACTL6B "Actin-like protein 6B"	0.794	0.190	0.641	3.8e-24
UNIPROTKB|E2RCX1	426	ACTL6B "Uncharacterized protei	0.794	0.190	0.641	3.8e-24
UNIPROTKB|O94805	426	ACTL6B "Actin-like protein 6B"	0.794	0.190	0.641	3.8e-24
UNIPROTKB|F2Z4Z7	426	ACTL6B "Uncharacterized protei	0.794	0.190	0.641	3.8e-24
MGI|MGI:1933548	426	Actl6b "actin-like 6B" [Mus mu	0.794	0.190	0.641	3.8e-24
RGD|1307763	426	Actl6b "actin-like 6B" [Rattus	0.794	0.190	0.641	3.8e-24
UNIPROTKB|E1BR36	379	ACTL6A "Uncharacterized protei	0.794	0.213	0.629	1.4e-23

FB|FBgn0025716 Bap55 "Brahma associated protein 55kD" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 61/81 (75%), Positives = 69/81 (85%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GFPERLNRDL +R P++ +LK+ISANGS ERRFGAWIGGSILASIGTFQQ
Sbjct:   345 VVTGGNTLLQGFPERLNRDLQLRAPSNTRLKMISANGSVERRFGAWIGGSILASIGTFQQ 404

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWISSQEYEE GK QV+RKCP
Sbjct:   405 MWISSQEYEEAGKSQVERKCP 425

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0035060 "brahma complex" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=IC

GO:0000910 "cytokinesis" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

GO:2000637 "positive regulation of gene silencing by miRNA" evidence=IMP

ZFIN|ZDB-GENE-050522-191 actl6b "actin-like 6B" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 2.3e-25, P = 2.3e-25
 Identities = 54/81 (66%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GF ERLNR+LS + P SM+LKLI+ N S ERRF +WIGGSILAS+GTFQQ
Sbjct:   346 IVTGGNTLLQGFTERLNRELSQKAPPSMRLKLIACNSSIERRFSSWIGGSILASLGTFQQ 405

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEY+EGGK  V+RKCP
Sbjct:   406 MWISKQEYDEGGKQSVERKCP 426

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-020419-36 actl6a "actin-like 6A" [Danio rerio (taxid:7955)]

 Score = 284 (105.0 bits), Expect = 7.8e-25, P = 7.8e-25
 Identities = 54/81 (66%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    + GF +RLNR+LS + P SM+LKLI+ N + ERRF AWIGGSILAS+GTFQQ
Sbjct:   349 VVTGGNTLIQGFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSAWIGGSILASLGTFQQ 408

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  VDRKCP
Sbjct:   409 MWISKQEYEEGGKQCVDRKCP 429

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|A4FUX8 ACTL6B "Actin-like protein 6B" [Bos taurus (taxid:9913)]

 Score = 278 (102.9 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct:   346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  V+RKCP
Sbjct:   406 MWISKQEYEEGGKQCVERKCP 426

GO:0071565 "nBAF complex" evidence=ISS

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RCX1 ACTL6B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct:   346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  V+RKCP
Sbjct:   406 MWISKQEYEEGGKQCVERKCP 426

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O94805 ACTL6B "Actin-like protein 6B" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct:   346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  V+RKCP
Sbjct:   406 MWISKQEYEEGGKQCVERKCP 426

GO:0005524 "ATP binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006325 "chromatin organization" evidence=NAS

GO:0016514 "SWI/SNF complex" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0071565 "nBAF complex" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z4Z7 ACTL6B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 278 (102.9 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct:   346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  V+RKCP
Sbjct:   406 MWISKQEYEEGGKQCVERKCP 426

GO:0071565 "nBAF complex" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1933548 Actl6b "actin-like 6B" [Mus musculus (taxid:10090)]

 Score = 278 (102.9 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct:   346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  V+RKCP
Sbjct:   406 MWISKQEYEEGGKQCVERKCP 426

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006333 "chromatin assembly or disassembly" evidence=IC

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0016514 "SWI/SNF complex" evidence=ISO;IDA

GO:0016568 "chromatin modification" evidence=IEA

GO:0071565 "nBAF complex" evidence=IDA

RGD|1307763 Actl6b "actin-like 6B" [Rattus norvegicus (taxid:10116)]

 Score = 278 (102.9 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    L GF +RLNR+LS + P SM+LKLI++N + ER+F  WIGGSILAS+GTFQQ
Sbjct:   346 IVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQ 405

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  V+RKCP
Sbjct:   406 MWISKQEYEEGGKQCVERKCP 426

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=ISS

UNIPROTKB|E1BR36 ACTL6A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query:     1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
             ++ G    +  F +RLNR+LS + P SM+LKLI+ N + ERRF +WIGGSILAS+GTFQQ
Sbjct:   299 IVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQ 358

Query:    61 MWISSQEYEEGGKGQVDRKCP 81
             MWIS QEYEEGGK  V+RKCP
Sbjct:   359 MWISKQEYEEGGKQCVERKCP 379

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99MR0	ACL6B_MOUSE	No assigned EC number	0.6419	0.7941	0.1901	yes	N/A
P86173	ACL6B_RAT	No assigned EC number	0.6419	0.7941	0.1901	yes	N/A
Q9UVF3	ACT_YARLI	No assigned EC number	0.5285	0.6568	0.1786	yes	N/A
A4FUX8	ACL6B_BOVIN	No assigned EC number	0.6419	0.7941	0.1901	yes	N/A
Q4IPI4	ARP4_GIBZE	No assigned EC number	0.5125	0.7745	0.1677	yes	N/A
O94805	ACL6B_HUMAN	No assigned EC number	0.6419	0.7941	0.1901	yes	N/A
P07830	ACT1_DICDI	No assigned EC number	0.5142	0.6568	0.1781	yes	N/A
Q54GX7	ACT10_DICDI	No assigned EC number	0.5142	0.6568	0.1781	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
pfam00022	367	pfam00022, Actin, Actin	3e-33
smart00268	373	smart00268, ACTIN, Actin	5e-25
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	6e-23
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	1e-20
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	4e-15
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	9e-15
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	2e-13
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	2e-06

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score =  117 bits (296), Expect = 3e-33
 Identities = 43/78 (55%), Positives = 56/78 (71%), Gaps = 3/78 (3%)

Query: 4   GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
           GT L   GF ERL ++L+   P+ +K+K+I+     ER++ AWIGGSILAS+GTFQQMW+
Sbjct: 293 GTTL-FPGFTERLEKELAQLAPSGVKVKIIAPP--NERKYSAWIGGSILASLGTFQQMWV 349

Query: 64  SSQEYEEGGKGQVDRKCP 81
           S QEYEE G   V+RKC 
Sbjct: 350 SKQEYEEHGSSVVERKCF 367

Length = 367

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score = 95.8 bits (239), Expect = 5e-25
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           GF ERL ++L    P  +K+K+I+     ER++  W+GGSILAS+ TF+ MWI+ +EYEE
Sbjct: 306 GFGERLEKELKQLAPKKLKVKVIA---PPERKYSVWLGGSILASLSTFEDMWITKKEYEE 362

Query: 71  GGKGQVDRKC 80
            G   V+RKC
Sbjct: 363 SGSQIVERKC 372

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score = 90.2 bits (224), Expect = 6e-23
 Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 4/77 (5%)

Query: 4   GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
           GT +   G PERL ++L+   P++MK+K+++     ER++  WIGGSIL+S+ TFQQMW+
Sbjct: 305 GTTM-YRGLPERLTKELTTLAPSTMKIKVVA---PPERKYSVWIGGSILSSLPTFQQMWV 360

Query: 64  SSQEYEEGGKGQVDRKC 80
           + +EY+E G   V RKC
Sbjct: 361 TKEEYDESGPSIVHRKC 377

Length = 378

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score = 84.0 bits (207), Expect = 1e-20
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)

Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 309 GIADRMNKELTALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWISKEEYDE 365

Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 366 SGPSIVHRKC 375

Length = 376

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 69.0 bits (169), Expect = 4e-15
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           GF ERL ++L+   P+  K   +S     +    AW+G SILAS+ TFQQ+WI+ +EYEE
Sbjct: 377 GFAERLQKELTSLAPSIWK---VSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEE 433

Query: 71  GGKGQVDRKC 80
            G   +  K 
Sbjct: 434 HGPDILQEKR 443

Length = 444

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 67.7 bits (165), Expect = 9e-15
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 4/76 (5%)

Query: 4   GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
           GT +   GF +RL  ++    P  + ++ ISA    ER+F  +IGGSILAS+ TF+++WI
Sbjct: 307 GTTM-FHGFGDRLLNEIRKFAPKDITIR-ISA--PPERKFSTFIGGSILASLATFKKIWI 362

Query: 64  SSQEYEEGGKGQVDRK 79
           S QE++E G   + RK
Sbjct: 363 SKQEFDEYGSVILHRK 378

Length = 380

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 4/77 (5%)

Query: 4   GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
           GT L   G   RL+ +L+  +P+ +K+++ +     +RRF AWIGGSI  ++ T Q  WI
Sbjct: 302 GTTL-FPGIANRLSNELTNLVPSQLKIQVAA---PPDRRFSAWIGGSIQCTLSTQQPQWI 357

Query: 64  SSQEYEEGGKGQVDRKC 80
             QEY+E G   V RKC
Sbjct: 358 KRQEYDEQGPSIVHRKC 374

Length = 375

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 19/78 (24%)

Query: 11  GFPERLNRDLSVRI----------------PASMKLKLISANGSAERRFGAWIGGSILAS 54
           GF +RL RD+  R+                P  + + ++S      +R+  W GGS+LAS
Sbjct: 327 GFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHP---RQRYAVWYGGSMLAS 383

Query: 55  IGTFQQMWISSQEYEEGG 72
              F+++  +  EY+E G
Sbjct: 384 SPEFEKVCHTKAEYDEYG 401

Length = 414

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PTZ00452	375	actin; Provisional	99.93
PTZ00466	380	actin-like protein; Provisional	99.92
PTZ00281	376	actin; Provisional	99.92
KOG0676|consensus	372		99.91
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	99.91
PTZ00004	378	actin-2; Provisional	99.91
PTZ00280	414	Actin-related protein 3; Provisional	99.89
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	99.89
KOG0679|consensus	426		99.89
COG5277	444	Actin and related proteins [Cytoskeleton]	99.85
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	99.84
KOG0680|consensus	400		99.8
KOG0681|consensus	645		99.67
KOG0677|consensus	389		99.55
KOG0797|consensus	618		99.31
KOG0678|consensus	415		99.16
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	96.86
PRK13927	334	rod shape-determining protein MreB; Provisional	96.77
PRK13930	335	rod shape-determining protein MreB; Provisional	96.75
PRK13928	336	rod shape-determining protein Mbl; Provisional	96.2
PRK13929	335	rod-share determining protein MreBH; Provisional	95.99
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	95.51
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	95.47
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	95.24
CHL00094	621	dnaK heat shock protein 70	91.35
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	89.81
PRK09472	420	ftsA cell division protein FtsA; Reviewed	89.75
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	89.48
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	89.02
PRK13411	653	molecular chaperone DnaK; Provisional	88.96
PRK01433	595	hscA chaperone protein HscA; Provisional	87.78
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	87.17
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	86.64
PTZ00400	663	DnaK-type molecular chaperone; Provisional	86.64
PTZ00009	653	heat shock 70 kDa protein; Provisional	86.14
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	84.88
PLN03184	673	chloroplast Hsp70; Provisional	83.33
PRK05183	616	hscA chaperone protein HscA; Provisional	83.22
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	81.79
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	81.72
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	80.72
PRK13410	668	molecular chaperone DnaK; Provisional	80.37
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	80.1

>PTZ00452 actin; Provisional

Probab=99.93  E-value=1.5e-26  Score=180.56  Aligned_cols=78  Identities=38%  Similarity=0.761  Sum_probs=75.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      ||+||+|+||||.+||++||++++|...+++|.+   ++++++++|+|||++|++++|+++||||+||+|+|++++++||
T Consensus       298 vL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~---~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~  374 (375)
T PTZ00452        298 VLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAA---PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKC  374 (375)
T ss_pred             EEecccccccCHHHHHHHHHHHhCCCCceeEEec---CCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeec
Confidence            6899999999999999999999999988999998   7799999999999999999999999999999999999999998


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       375 ~  375 (375)
T PTZ00452        375 F  375 (375)
T ss_pred             C
Confidence            5

>PTZ00466 actin-like protein; Provisional

Probab=99.92  E-value=7.8e-26  Score=176.83  Aligned_cols=78  Identities=36%  Similarity=0.681  Sum_probs=74.9

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      ||+||+|+||||.+||++||+++.|..++++|..   ++++++++|+|||++|+++.|++.||||+||+|+|+++++|||
T Consensus       303 vL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~---~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~  379 (380)
T PTZ00466        303 VLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA---PPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKT  379 (380)
T ss_pred             EEeCCccccCCHHHHHHHHHHHhCCCCceEEEec---CCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeec
Confidence            6899999999999999999999999989999998   7899999999999999999999999999999999999999998


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       380 ~  380 (380)
T PTZ00466        380 F  380 (380)
T ss_pred             C
Confidence            5

>PTZ00281 actin; Provisional

Probab=99.92  E-value=1e-25  Score=175.45  Aligned_cols=78  Identities=47%  Similarity=0.925  Sum_probs=74.9

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      ||+||+|+||||.+||++||+++.|...+++|+.   +++|++++|+|||++|+++.|++.||||+||+|+|+++++|||
T Consensus       299 vl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~---~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~  375 (376)
T PTZ00281        299 VLSGGTTMFPGIADRMNKELTALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKC  375 (376)
T ss_pred             cccCccccCcCHHHHHHHHHHHhCCCCcceEEec---CCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeec
Confidence            6899999999999999999999999989999998   6789999999999999999999999999999999999999998


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       376 ~  376 (376)
T PTZ00281        376 F  376 (376)
T ss_pred             C
Confidence            5

>KOG0676|consensus

Probab=99.91  E-value=2.4e-25  Score=174.35  Aligned_cols=78  Identities=45%  Similarity=0.900  Sum_probs=75.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      ||+||+|++|||.+||++||+.++|..++++|++   ++++.+++|+||||+|++++|+++||||+||+|+|+++++|||
T Consensus       295 vLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~---pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~  371 (372)
T KOG0676|consen  295 VLSGGTTMFPGLADRLQKELQALAPSTIKIKVIA---PPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKC  371 (372)
T ss_pred             EEeCCcccchhHHHHHHHHHhhcCCCCcceEEec---CcccccceecCceeEeecchHhhccccHHHHhhhCCceeeecc
Confidence            6999999999999999999999999999999999   7888899999999999999999999999999999999999999


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      |
T Consensus       372 f  372 (372)
T KOG0676|consen  372 F  372 (372)
T ss_pred             C
Confidence            6

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=99.91  E-value=3.6e-25  Score=170.94  Aligned_cols=78  Identities=46%  Similarity=0.880  Sum_probs=73.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCC-CcccceeehhhhhccccccccccccHHHHhhcCchhhhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSA-ERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRK   79 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~-~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk   79 (102)
                      +|+||+|+||||.+||++||+.+.|...+++|+.   ++ +|.+++|+|||++|+++.|+++||||+||+|+|+++++||
T Consensus       315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~---~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rk  391 (393)
T PF00022_consen  315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIA---PPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRK  391 (393)
T ss_dssp             EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE-----T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHH
T ss_pred             EEecccccccchHHHHHHHhhhhhhccccceecc---CchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeec
Confidence            5899999999999999999999999999999999   55 8999999999999999999999999999999999999999


Q ss_pred             cc
Q psy15064         80 CP   81 (102)
Q Consensus        80 ~~   81 (102)
                      |+
T Consensus       392 c~  393 (393)
T PF00022_consen  392 CF  393 (393)
T ss_dssp             T-
T ss_pred             CC
Confidence            96

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>PTZ00004 actin-2; Provisional

Probab=99.91  E-value=4e-25  Score=172.09  Aligned_cols=78  Identities=45%  Similarity=0.920  Sum_probs=74.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      ||+||+|+||||.+||++||++++|...+++|..   ++++.+++|+|||++|++++|++.||||+||+|+|+++++|||
T Consensus       301 vl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~---~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~  377 (378)
T PTZ00004        301 VLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVA---PPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKC  377 (378)
T ss_pred             EeccchhcCcCHHHHHHHHHHHhCCCCccEEEec---CCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeec
Confidence            6899999999999999999999999988999998   7789999999999999999999999999999999999999998


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       378 ~  378 (378)
T PTZ00004        378 F  378 (378)
T ss_pred             C
Confidence            5

>PTZ00280 Actin-related protein 3; Provisional

Probab=99.89  E-value=7.3e-24  Score=166.54  Aligned_cols=78  Identities=29%  Similarity=0.595  Sum_probs=71.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhC----------------CCCccEEEEecCCCCCcccceeehhhhhcccccccccccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRI----------------PASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWIS   64 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~----------------p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~It   64 (102)
                      ||+||+|+||||.+||++||++++                |..++++|++   ++++.+++|+|||++|++++|+++|||
T Consensus       317 vL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~W~GgSilas~~~f~~~~it  393 (414)
T PTZ00280        317 VLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVS---HPRQRYAVWYGGSMLASSPEFEKVCHT  393 (414)
T ss_pred             EEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEec---CCccceeEEEChhhcccCcchhhheEE
Confidence            689999999999999999999986                4466888888   667899999999999999999999999


Q ss_pred             HHHHhhcCchhhhhhcc
Q psy15064         65 SQEYEEGGKGQVDRKCP   81 (102)
Q Consensus        65 k~eY~E~G~~i~~rk~~   81 (102)
                      |+||+|+|+++++++..
T Consensus       394 k~eY~E~G~~i~~~~~~  410 (414)
T PTZ00280        394 KAEYDEYGPSICRYNNV  410 (414)
T ss_pred             HHHHhccChHheeeccc
Confidence            99999999999988743

>smart00268 ACTIN Actin

Probab=99.89  E-value=1e-23  Score=162.54  Aligned_cols=78  Identities=45%  Similarity=0.885  Sum_probs=74.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      +|+||+|++|||.+||++||+++.|..+++++..   ++++.+++|+|||++|+++.|++.||||+||+|+|++++++||
T Consensus       296 vltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~---~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~  372 (373)
T smart00268      296 VLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIA---PPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKC  372 (373)
T ss_pred             EeecccccCcCHHHHHHHHHHHhCCCCceeEEec---CCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeec
Confidence            6899999999999999999999999888899987   6788999999999999999999999999999999999999998


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       373 ~  373 (373)
T smart00268      373 F  373 (373)
T ss_pred             C
Confidence            5

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>KOG0679|consensus

Probab=99.89  E-value=7.3e-24  Score=165.77  Aligned_cols=80  Identities=58%  Similarity=1.052  Sum_probs=76.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCc-hhhhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGK-GQVDRK   79 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~-~i~~rk   79 (102)
                      ||+||+|+|+||.+||++||..+.|.. +++++++.+..+++|++|+||||||++++|+++||+|+||+|.|. ..+.+|
T Consensus       346 ivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~r  424 (426)
T KOG0679|consen  346 IVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERR  424 (426)
T ss_pred             EEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhc
Confidence            689999999999999999999999987 999999888999999999999999999999999999999999999 778888


Q ss_pred             cc
Q psy15064         80 CP   81 (102)
Q Consensus        80 ~~   81 (102)
                      |.
T Consensus       425 c~  426 (426)
T KOG0679|consen  425 CP  426 (426)
T ss_pred             CC
Confidence            84

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=99.85  E-value=4.2e-22  Score=159.17  Aligned_cols=78  Identities=38%  Similarity=0.726  Sum_probs=75.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      ||+||+|++|||.+||++||+.+.|..+.+.|..   +++|.+.+|+|||++|+++.|+.+||||+||+|+|+++++++|
T Consensus       367 vitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~---~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~  443 (444)
T COG5277         367 VLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIP---PPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKR  443 (444)
T ss_pred             EEecCccCCCCHHHHHHHHHHhhcCCCCceeeec---CCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhcc
Confidence            6899999999999999999999999999999999   7899999999999999999999999999999999999999987


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       444 ~  444 (444)
T COG5277         444 F  444 (444)
T ss_pred             C
Confidence            4

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=99.84  E-value=1.1e-21  Score=151.25  Aligned_cols=76  Identities=46%  Similarity=0.849  Sum_probs=70.3

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCC--CccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPA--SMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDR   78 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~--~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~r   78 (102)
                      +|+||+|++|||.+||++||..+.|.  ...+++..   ..+|.+++|+|||++|+++.|++.||||+||+|+|+++++|
T Consensus       294 vl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~---~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~  370 (371)
T cd00012         294 VLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIA---PPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHR  370 (371)
T ss_pred             EEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEcc---CCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEec
Confidence            58999999999999999999999987  55677776   78899999999999999999999999999999999999987


Q ss_pred             h
Q psy15064         79 K   79 (102)
Q Consensus        79 k   79 (102)
                      |
T Consensus       371 k  371 (371)
T cd00012         371 K  371 (371)
T ss_pred             C
Confidence            5

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0680|consensus

Probab=99.80  E-value=4.6e-20  Score=142.52  Aligned_cols=78  Identities=28%  Similarity=0.470  Sum_probs=74.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      |++||+++||||.+||.+||+.++|..+.++|..   |.||...+|.||+-++..+.|...||||+||+|+|++++.+|.
T Consensus       322 v~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~---p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~  398 (400)
T KOG0680|consen  322 VCIGGNSNFPGFRQRLARELRSLLPADWEVSVSV---PEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKR  398 (400)
T ss_pred             EEecCccCCcchHHHHHHHHHhhCCccceEEEec---CCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhc
Confidence            5899999999999999999999999999999999   8999999999999999999999999999999999999988775


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       399 ~  399 (400)
T KOG0680|consen  399 F  399 (400)
T ss_pred             c
Confidence            4

>KOG0681|consensus

Probab=99.67  E-value=3.6e-17  Score=132.72  Aligned_cols=79  Identities=24%  Similarity=0.480  Sum_probs=75.6

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      +||||++++||+++||++||+.+.|....|+|+.   .+||..+||.||+.+|..++|...++||+||+|+|+.+++..|
T Consensus       563 llTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~r---asdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~  639 (645)
T KOG0681|consen  563 LLTGGCSQLPGMKERIKKELTSMRPVGSSINVVR---ASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV  639 (645)
T ss_pred             EeecccccCcCHHHHHHHHhheecccCCceEEEe---cCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence            4899999999999999999999999999999998   8999999999999999999999999999999999999999987


Q ss_pred             cc
Q psy15064         81 PR   82 (102)
Q Consensus        81 ~~   82 (102)
                      ..
T Consensus       640 ~~  641 (645)
T KOG0681|consen  640 AS  641 (645)
T ss_pred             hc
Confidence            64

>KOG0677|consensus

Probab=99.55  E-value=2.7e-15  Score=114.28  Aligned_cols=76  Identities=26%  Similarity=0.569  Sum_probs=65.5

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhC-----C------CCccEEEEecCCCCCcccceeehhhhhccc-cccccccccHHHH
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRI-----P------ASMKLKLISANGSAERRFGAWIGGSILASI-GTFQQMWISSQEY   68 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~-----p------~~~~i~v~~~~~~~~~~~~aW~Ggsila~~-~~~~~~~Itk~eY   68 (102)
                      ||+||+||+||+..||++||+++.     .      ..+++++..   |+.+...+++||+++|.. .+-+++|++|+||
T Consensus       299 VLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEd---PPrRKhMVflGGAVLA~imkD~d~fW~skqey  375 (389)
T KOG0677|consen  299 VLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIED---PPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEY  375 (389)
T ss_pred             eecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccC---CCccceeEEEchHHHHHHhcCCccceecHHHH
Confidence            689999999999999999999873     1      124677777   788999999999999985 6667999999999


Q ss_pred             hhcCchhhhhh
Q psy15064         69 EEGGKGQVDRK   79 (102)
Q Consensus        69 ~E~G~~i~~rk   79 (102)
                      +|.|.+.+.+.
T Consensus       376 qE~G~~~l~k~  386 (389)
T KOG0677|consen  376 QEEGINVLNKL  386 (389)
T ss_pred             HhhhHHHHHhh
Confidence            99999988764

>KOG0797|consensus

Probab=99.31  E-value=8.6e-13  Score=106.97  Aligned_cols=84  Identities=21%  Similarity=0.418  Sum_probs=75.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCC----ccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPAS----MKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQV   76 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~----~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~   76 (102)
                      .++||..++|||.+-|++.+....|+.    ..|.|+.+|+..||++-+|+||||++.+...++.||+..||+-+|.+++
T Consensus       531 l~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL  610 (618)
T KOG0797|consen  531 LLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVL  610 (618)
T ss_pred             HhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhh
Confidence            378999999999999999999888762    2588888888899999999999999999999999999999999999999


Q ss_pred             hhhccccc
Q psy15064         77 DRKCPRAF   84 (102)
Q Consensus        77 ~rk~~~~~   84 (102)
                      +.||.+.|
T Consensus       611 ~~k~~f~w  618 (618)
T KOG0797|consen  611 QYKKYFSW  618 (618)
T ss_pred             hhcccccC
Confidence            99988543

>KOG0678|consensus

Probab=99.16  E-value=5.4e-12  Score=98.28  Aligned_cols=76  Identities=28%  Similarity=0.458  Sum_probs=66.2

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCC--------------CCccEEEEecCCCCCcccceeehhhhhccccccccccccHH
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIP--------------ASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQ   66 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p--------------~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~   66 (102)
                      +++||+++|++|..|++++++.++.              ....++++.   ..-.++++|.||+++++.+.|-..+-||+
T Consensus       319 vlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvis---h~~qr~avwfggs~lastpef~~~~~tk~  395 (415)
T KOG0678|consen  319 VLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLS---HLLQRTAVWFGGSKLASTPEFVPACHTKE  395 (415)
T ss_pred             hhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhh---hhhhhcceeccCccccCCcccccccCcch
Confidence            5799999999999999999987742              234577777   67789999999999999999999999999


Q ss_pred             HHhhcCchhhhhh
Q psy15064         67 EYEEGGKGQVDRK   79 (102)
Q Consensus        67 eY~E~G~~i~~rk   79 (102)
                      +|+|+|+++++..
T Consensus       396 ~yee~g~si~r~~  408 (415)
T KOG0678|consen  396 DYEEYGPSICRTN  408 (415)
T ss_pred             hhhhhChhhhhcC
Confidence            9999999998763

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=96.86  E-value=0.00028  Score=54.01  Aligned_cols=43  Identities=12%  Similarity=0.161  Sum_probs=33.1

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      ||+||+|+||||.+||++++..        .|..   ..+|..++=.|++++..
T Consensus       284 vL~GGss~ipgl~e~l~~~~~~--------~v~~---~~~P~~~va~Ga~~~~~  326 (333)
T TIGR00904       284 VLTGGGALLRNLDKLLSKETGL--------PVIV---ADDPLLCVAKGTGKALE  326 (333)
T ss_pred             EEECcccchhhHHHHHHHHHCC--------Ccee---cCChHHHHHHHHHHHHh
Confidence            6899999999999999999842        1233   45677777788888764

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=96.77  E-value=0.00032  Score=53.52  Aligned_cols=43  Identities=12%  Similarity=0.162  Sum_probs=32.9

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|||.+||++++.      .++.+     ..+|..++=.|+++++.
T Consensus       281 vL~GG~s~ipgl~~~l~~~~~------~~v~~-----~~~P~~ava~Ga~~~~~  323 (334)
T PRK13927        281 VLTGGGALLRGLDKLLSEETG------LPVHV-----AEDPLTCVARGTGKALE  323 (334)
T ss_pred             EEECchhhhhHHHHHHHHHHC------CCcEe-----cCCHHHHHHHHHHHHHh
Confidence            589999999999999999984      22333     34567777788888764

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=96.75  E-value=0.00039  Score=52.92  Aligned_cols=44  Identities=11%  Similarity=0.102  Sum_probs=32.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI   55 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~   55 (102)
                      +|+||+|++|||.+||++++..      ++.  .   ..+|..+.=.|+++++..
T Consensus       285 vL~GG~s~ipg~~~~l~~~~~~------~v~--~---~~~p~~ava~Ga~~~~~~  328 (335)
T PRK13930        285 VLTGGGALLRGLDKLLSEETGL------PVH--I---AEDPLTCVARGTGKALEN  328 (335)
T ss_pred             EEECchhcchhHHHHHHHHHCC------Cce--e---cCCHHHHHHHHHHHHHhC
Confidence            5899999999999999999851      222  2   345666666788888753

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=96.20  E-value=0.0015  Score=50.17  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=33.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++||+.++|++++..      .+.  .   ..+|..++=+|+++++.
T Consensus       280 vL~GG~s~ipgi~e~l~~~~~~------~v~--~---~~~P~~ava~Gaa~~~~  322 (336)
T PRK13928        280 IMTGGGALLHGLDKLLAEETKV------PVY--I---AEDPISCVALGTGKMLE  322 (336)
T ss_pred             EEECcccchhhHHHHHHHHHCC------Cce--e---cCCHHHHHHHHHHHHHh
Confidence            5899999999999999999852      222  2   34677888889998864

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=95.99  E-value=0.0026  Score=49.08  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=31.3

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA   53 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila   53 (102)
                      ||+||+|+||||.+||++|+..      .+.+     ..+|..++=+|++..-
T Consensus       283 vLtGG~s~lpgl~e~l~~~~~~------~v~~-----~~~P~~~Va~Ga~~~~  324 (335)
T PRK13929        283 ILTGGGALLNGIKEWLSEEIVV------PVHV-----AANPLESVAIGTGRSL  324 (335)
T ss_pred             EEEchhhhhhhHHHHHHHHHCC------Ccee-----CCCHHHHHHHHHHHHH
Confidence            6899999999999999999952      2222     3456667777777653

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=95.51  E-value=0.0066  Score=47.36  Aligned_cols=43  Identities=14%  Similarity=0.191  Sum_probs=33.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +||||+++++||.++|++|+.        +.|..   ..+|.+++=.|+..+.+
T Consensus       278 ~LtGGga~l~Gl~~~i~~~~~--------~pV~v---a~~P~~~va~G~~~~l~  320 (326)
T PF06723_consen  278 VLTGGGALLRGLDEYISEETG--------VPVRV---ADDPLTAVARGAGKLLE  320 (326)
T ss_dssp             EEESGGGGSBTHHHHHHHHHS--------S-EEE----SSTTTHHHHHHHHTTC
T ss_pred             EEEChhhhhccHHHHHHHHHC--------CCEEE---cCCHHHHHHHHHHHHHh
Confidence            589999999999999999993        44554   56788888888877654

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=95.47  E-value=0.0062  Score=45.12  Aligned_cols=40  Identities=18%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSI   51 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsi   51 (102)
                      +|+||++++||+.+.|++++..  |      |..   +.+|.++.=+|+++
T Consensus       199 ~LtGG~a~ipgl~e~l~~~lg~--~------v~~---~~~P~~~va~Gaa~  238 (239)
T TIGR02529       199 YLVGGACSFSGFADVFEKQLGL--N------VIK---PQHPLYVTPLGIAM  238 (239)
T ss_pred             EEECchhcchhHHHHHHHHhCC--C------ccc---CCCCCeehhheeec
Confidence            5899999999999999988842  2      122   45677776666653

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=95.24  E-value=0.0075  Score=45.31  Aligned_cols=41  Identities=20%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSIL   52 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsil   52 (102)
                      +|+||+|++||+.+.+++.+..  |    +.  .   +.+|.+++=+|++++
T Consensus       226 vLtGG~s~lpgl~e~l~~~lg~--~----v~--~---~~~P~~~~a~Gaa~~  266 (267)
T PRK15080        226 YLVGGTCCLPGFEEVFEKQTGL--P----VH--K---PQHPLFVTPLGIALS  266 (267)
T ss_pred             EEECCcccchhHHHHHHHHhCC--C----cc--c---CCCchHHHHHHHHhh
Confidence            5899999999999999988842  2    12  2   456777777777765

>CHL00094 dnaK heat shock protein 70

Probab=91.35  E-value=0.085  Score=44.06  Aligned_cols=44  Identities=18%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI   55 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~   55 (102)
                      +|+||+|++|.+.+.|.+.+...        +..   ..+|..++-+||++.|..
T Consensus       333 iLvGGssriP~v~~~l~~~fg~~--------~~~---~~~pdeava~GAA~~aa~  376 (621)
T CHL00094        333 VLVGGSTRIPAIQELVKKLLGKK--------PNQ---SVNPDEVVAIGAAVQAGV  376 (621)
T ss_pred             EEECCccCChHHHHHHHHHhCCC--------cCc---CCCchhHHHhhhHHHHHH
Confidence            58999999999999999776421        112   345667778899988753

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=89.81  E-value=0.19  Score=41.95  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=31.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|.+|.+.++|++.+...        +..   ..+|..++-.||++.|.
T Consensus       331 iLvGGssriP~v~~~l~~~fg~~--------~~~---~~npdeava~GAa~~aa  373 (627)
T PRK00290        331 ILVGGSTRMPAVQELVKEFFGKE--------PNK---GVNPDEVVAIGAAIQGG  373 (627)
T ss_pred             EEECCcCCChHHHHHHHHHhCCC--------CCc---CcCChHHHHHhHHHHHH
Confidence            58999999999999998776321        112   34566777888888875

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=89.75  E-value=0.24  Score=39.47  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCC-------CCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANG-------SAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~-------~~~~~~~aW~Ggsila~   54 (102)
                      |||||++++||+.+.+++-+..      .+++..|..       ..+|.|++=.|...++.
T Consensus       333 vLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~  387 (420)
T PRK09472        333 VLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK  387 (420)
T ss_pred             EEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence            6899999999999999977752      233332211       24678888788877765

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=89.48  E-value=0.17  Score=41.85  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=31.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+.+.|.+.+..        .+..   ..+|..++-.||++.|.
T Consensus       329 ~LvGGssriP~v~~~i~~~f~~--------~~~~---~~~pdeava~GAa~~aa  371 (595)
T TIGR02350       329 ILVGGSTRIPAVQELVKDFFGK--------EPNK---SVNPDEVVAIGAAIQGG  371 (595)
T ss_pred             EEECCcccChHHHHHHHHHhCC--------cccC---CcCcHHHHHHHHHHHHH
Confidence            5899999999999999876642        1122   34566677888888875

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>TIGR01174 ftsA cell division protein FtsA

Probab=89.02  E-value=0.19  Score=38.99  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=19.5

Q ss_pred             CeeccCCCCCChHHHHHHHHhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSV   22 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~   22 (102)
                      +|+||+|++||+.+.+.+.+..
T Consensus       319 vLtGG~S~ipgi~~~l~~~~~~  340 (371)
T TIGR01174       319 VLTGGGAQLEGIVELAEKVFDN  340 (371)
T ss_pred             EEeChHHcccCHHHHHHHHhCC
Confidence            5899999999999999988744

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PRK13411 molecular chaperone DnaK; Provisional

Probab=88.96  E-value=0.24  Score=41.80  Aligned_cols=44  Identities=16%  Similarity=0.210  Sum_probs=29.5

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+++.|++.+....       +..   ..+|..++=.||++.|.
T Consensus       332 iLvGGssriP~v~~~l~~~f~~~~-------~~~---~~npdeaVA~GAAi~aa  375 (653)
T PRK13411        332 ILVGGSTRIPAVQEAIQKFFGGKQ-------PDR---SVNPDEAVALGAAIQAG  375 (653)
T ss_pred             EEECCCCCcchHHHHHHHHcCCcC-------cCC---CCCchHHHHHHHHHHHH
Confidence            589999999999999987664211       111   23445555567777764

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=87.78  E-value=0.22  Score=41.72  Aligned_cols=43  Identities=19%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+.+.|.+.+..        .+..   ..+|..++=.||++.|.
T Consensus       313 iLvGGssriP~v~~~l~~~f~~--------~~~~---~~npdeaVA~GAAi~a~  355 (595)
T PRK01433        313 ILVGGATRIPLIKDELYKAFKV--------DILS---DIDPDKAVVWGAALQAE  355 (595)
T ss_pred             EEECCcccChhHHHHHHHHhCC--------Ccee---cCCchHHHHHHHHHHHH
Confidence            5899999999999999876632        1222   34556666678887765

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=87.17  E-value=0.31  Score=37.18  Aligned_cols=47  Identities=15%  Similarity=0.215  Sum_probs=35.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA   53 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila   53 (102)
                      +++||.+.-+++.+.|+++|...   ...+.+..   ++++++..=+||++++
T Consensus       216 ~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~---~~~~q~~gAlGAAl~~  262 (262)
T TIGR02261       216 LCTGGLALDAGLLEALKDAIQEA---KMAVAAEN---HPDAIYAGAIGAALWG  262 (262)
T ss_pred             EEECcccccHHHHHHHHHHhccC---CcceEecC---CCcchHHHHHHHHHcC
Confidence            57999999999999999998542   13344544   6678888778888764

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=86.64  E-value=0.27  Score=41.68  Aligned_cols=43  Identities=14%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+.+.|.+.+... |       ..   ..+|..++=+||++.|.
T Consensus       358 vLVGGssriP~V~~~l~~~fg~~-~-------~~---~~nPdeaVA~GAAi~a~  400 (657)
T PTZ00186        358 VLVGGMTRMPKVVEEVKKFFQKD-P-------FR---GVNPDEAVALGAATLGG  400 (657)
T ss_pred             EEECCcccChHHHHHHHHHhCCC-c-------cc---cCCCchHHHHhHHHHHH
Confidence            58999999999999999776431 1       11   23445555667777764

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=86.64  E-value=0.49  Score=40.03  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|.+|.+++.|.+.+....        ..   ..+|..++=.||++.+.
T Consensus       372 iLvGGssriP~v~~~l~~~f~~~~--------~~---~~npdeaVA~GAAi~aa  414 (663)
T PTZ00400        372 ILVGGMTRMPKVSETVKKIFGKEP--------SK---GVNPDEAVAMGAAIQAG  414 (663)
T ss_pred             EEECCccCChHHHHHHHHHhCCCc--------cc---CCCCccceeeccHHHHH
Confidence            589999999999999987764211        11   33455556667777764

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=86.14  E-value=0.54  Score=39.65  Aligned_cols=44  Identities=14%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+++.|.+.+....+       ..   ..+|..++=.||++.|.
T Consensus       337 iLvGGssriP~v~~~i~~~f~~~~~-------~~---~~npdeaVA~GAa~~aa  380 (653)
T PTZ00009        337 VLVGGSTRIPKVQSLIKDFFNGKEP-------CK---SINPDEAVAYGAAVQAA  380 (653)
T ss_pred             EEECCCCCChhHHHHHHHHhCCCCC-------CC---CCCcchHHhhhhhhhHH
Confidence            5899999999999999876642111       11   23444555567777654

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=84.88  E-value=0.5  Score=39.42  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+.+.|.+.+... +       ..   ..+|..++=.||++.|.
T Consensus       317 iLvGGssriP~V~~~l~~~f~~~-~-------~~---~~npdeaVA~GAai~a~  359 (599)
T TIGR01991       317 VLVGGSTRMPLVRRAVAELFGQE-P-------LT---DIDPDQVVALGAAIQAD  359 (599)
T ss_pred             EEECCcCCChHHHHHHHHHhCCC-C-------CC---CCCCcHHHHHHHHHHHH
Confidence            58999999999999999766431 1       11   33455566678887764

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PLN03184 chloroplast Hsp70; Provisional

Probab=83.33  E-value=0.62  Score=39.53  Aligned_cols=43  Identities=12%  Similarity=0.166  Sum_probs=28.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+.++|.+.+...      +.  .   ..+|..++=+||++.|.
T Consensus       370 iLvGGssriP~V~~~i~~~fg~~------~~--~---~~npdeaVA~GAAi~aa  412 (673)
T PLN03184        370 ILVGGSTRIPAVQELVKKLTGKD------PN--V---TVNPDEVVALGAAVQAG  412 (673)
T ss_pred             EEECCccccHHHHHHHHHHhCCC------cc--c---ccCcchHHHHHHHHHHH
Confidence            58999999999999998776321      11  1   22344455567777664

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=83.22  E-value=0.47  Score=39.76  Aligned_cols=43  Identities=21%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|.+|.+.+.|.+.+... +       ..   ..+|..++=.||++.|.
T Consensus       333 iLvGGssriP~v~~~l~~~fg~~-~-------~~---~~npdeaVA~GAAi~a~  375 (616)
T PRK05183        333 VMVGGSTRVPLVREAVGEFFGRT-P-------LT---SIDPDKVVAIGAAIQAD  375 (616)
T ss_pred             EEECCcccChHHHHHHHHHhccC-c-------Cc---CCCchHHHHHHHHHHHH
Confidence            58999999999999998766431 1       11   33455556678887765

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=81.79  E-value=0.88  Score=37.03  Aligned_cols=47  Identities=11%  Similarity=0.140  Sum_probs=36.9

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA   53 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila   53 (102)
                      +++||.+.-++|.+.|+++|....+   ..+|+.   |+++++..=+|+++++
T Consensus       386 vftGGvA~N~gvv~aLe~~L~~~~~---~~~V~V---p~~pq~~GALGAAL~a  432 (432)
T TIGR02259       386 TFTGGVAKNEAAVKELRKLIKENYG---EVQINI---DPDSIYTGALGASEFA  432 (432)
T ss_pred             EEECCccccHHHHHHHHHHHccccC---CCeEec---CCCccHHHHHHHHHhC
Confidence            4799999999999999998865432   345666   6788988888888764

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=81.72  E-value=0.52  Score=38.08  Aligned_cols=43  Identities=19%  Similarity=0.379  Sum_probs=35.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +++||.+..+|+.+.|+++|.        .+++.   |+++++..=+||+++++
T Consensus       360 vftGGva~N~gvv~ale~~Lg--------~~iiv---Pe~pq~~GAiGAAL~A~  402 (404)
T TIGR03286       360 ILVGGTSLIEGLVKALGDLLG--------IEVVV---PEYSQYIGAVGAALLAS  402 (404)
T ss_pred             EEECChhhhHHHHHHHHHHhC--------CcEEE---CCcccHHHHHHHHHHhc
Confidence            579999999999999998873        35666   67889998899999874

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=80.72  E-value=0.94  Score=34.84  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=19.3

Q ss_pred             CeeccCCCCCChHHHHHHHHh
Q psy15064          1 MILGTALRLMGFPERLNRDLS   21 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~   21 (102)
                      +||||++.++|+.+-|.++|.
T Consensus       279 ~L~Ggga~l~gL~~~l~~~l~  299 (340)
T PF11104_consen  279 YLSGGGARLPGLAEYLSEELG  299 (340)
T ss_dssp             EEESGGGGSTTHHHHHHHHHT
T ss_pred             EEECCccchhhHHHHHHHHHC
Confidence            589999999999999999884

>PRK13410 molecular chaperone DnaK; Provisional

Probab=80.37  E-value=0.83  Score=38.80  Aligned_cols=43  Identities=14%  Similarity=0.184  Sum_probs=28.5

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|.+.+.|.+.+... +       ..   ..+|..++=+||++.|.
T Consensus       333 vLVGGssRiP~V~~~l~~~fg~~-~-------~~---~~npdeaVA~GAAi~aa  375 (668)
T PRK13410        333 VLVGGSTRMPMVQQLVRTLIPRE-P-------NQ---NVNPDEVVAVGAAIQAG  375 (668)
T ss_pred             EEECCccccHHHHHHHHHHcCCC-c-------cc---CCCCchHHHHhHHHHHH
Confidence            58999999999999998655321 1       11   23344455567777664

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=80.10  E-value=0.88  Score=33.54  Aligned_cols=40  Identities=20%  Similarity=0.417  Sum_probs=29.6

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSI   51 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsi   51 (102)
                      +++||.+..+++.+.|.+.+.        ..+..   ++++.+..=+|+++
T Consensus       208 vl~GGva~n~~l~~~l~~~lg--------~~v~~---~~~~~~~~AlGaAl  247 (248)
T TIGR00241       208 VFTGGVSKNKGLVKALEKKLG--------MKVIT---PPEPQIVGAVGAAL  247 (248)
T ss_pred             EEECccccCHHHHHHHHHHhC--------CcEEc---CCCccHHHHHHHHh
Confidence            589999999999999998872        34454   55666666667665

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		3e-17
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		3e-17
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		3e-17
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		4e-17
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		4e-17
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		4e-17
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		5e-17
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		5e-17
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		7e-17
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		7e-17
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		8e-17
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		8e-17
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		8e-17
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		8e-17
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		8e-17
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		8e-17
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		9e-17
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		1e-16
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		1e-16
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		1e-16
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		1e-16
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		1e-16
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		1e-16
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		1e-16
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		1e-16
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		1e-16
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		1e-16
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		2e-16
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		2e-16
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		6e-15
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		6e-15
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		7e-15
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		7e-15
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		1e-14
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		2e-14
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		2e-14
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		2e-14
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		1e-13
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		7e-13
3qb0_A	498	Crystal Structure Of Actin-Related Protein Arp4 Fro		3e-11
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		3e-04

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 301 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDE 357
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 358 SGPSIVHRKC 367

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 308 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 308 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 308 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 308 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 308 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS  EY+E
Sbjct: 308 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKHEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+N++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS  EY+E
Sbjct: 308 GIADRMNKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKHEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 307 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 363
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 364 SGPSIVHRKC 373

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 307 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 363
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 364 AGPSIVHRKC 373

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 307 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 363
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 364 SGPSIVHRKC 373

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 292 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 348
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 349 AGPSIVHRKC 358

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 365
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 366 AGPSIVHRKC 375

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 310 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 366
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 367 AGPSIVHRKC 376

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 304 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 360
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 361 AGPSIVHRKC 370

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 AGPSIVHRKC 374

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 310 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 366
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 367 AGPSIVHRKC 376

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 359
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 360 AGPSIVHRKC 369

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++L+   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 308 GIADRMQKELTALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKEEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 SGPSIVHRKC 374

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 365
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 366 AGPSIVHRKC 375

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 AGPSIVHRKC 374

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 304 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 360
Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 361 AGPSIVHRKC 370

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  ER+ ++++   P+SMK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 308 GIAERMQKEITALAPSSMKVKIIAP---PERKYSVWIGGSILASLTTFQQMWISKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V  KC
Sbjct: 365 SGPSIVHHKC 374

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  ER+ ++++   P+SMK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 308 GIAERMQKEITALAPSSMKVKIIAP---PERKYSVWIGGSILASLTTFQQMWISKQEYDE 364
Query: 71  GGKGQVDRKC 80
            G   V  KC
Sbjct: 365 SGPSIVHHKC 374

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 71  GGKGQVDR 78
            G   V R
Sbjct: 365 AGPSIVHR 372

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 309 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 365
Query: 71  GGKGQVDR 78
            G   V R
Sbjct: 366 AGPSIVHR 373

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  ER+ ++++   P+SMK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 303 GIAERMQKEITALAPSSMKVKIIAP---PERKYSVWIGGSILASLTTFQQMWISKQEYDE 359
Query: 71  GG 72
            G
Sbjct: 360 SG 361

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  ER+ ++++   P+SMK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 303 GIAERMQKEITALAPSSMKVKIIAP---PERKYSVWIGGSILASLTTFQQMWISKQEYDE 359
Query: 71  GG 72
            G
Sbjct: 360 SG 361

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWIS QEY+E
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWISKQEYDE 359
Query: 71  GG 72
            G
Sbjct: 360 SG 361

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 71  GG 72
            G
Sbjct: 365 AG 366

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 359
Query: 71  GG 72
            G
Sbjct: 360 AG 361

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 302 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 358
Query: 71  GG 72
            G
Sbjct: 359 AG 360

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 301 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEYDE 357

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEY 68
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSILASLSTFQQMWITKQEY 357

>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G    + G  +RL  +L+  +P S+K ++++   + ER++ +W+GGSIL S+GTF Q
Sbjct: 418 VLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQ 476
Query: 61  MWISSQEYEEGG 72
           +W+  +EYEE G
Sbjct: 477 LWVGKKEYEEVG 488

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 4   GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAE-------------RRFGAWIGGS 50
           G +     F  RL RDL   + A +KL    + G  +             +R+  W GGS
Sbjct: 323 GGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGS 382
Query: 51  ILASIGTFQQMWISSQEYEEGG 72
           +LAS   F Q+  + ++YEE G
Sbjct: 383 MLASTPEFYQVCHTKKDYEEIG 404

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	1e-31
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	5e-31
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	3e-24
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	3e-24
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	4e-22

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  114 bits (287), Expect = 1e-31
 Identities = 28/77 (36%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 4   GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
           GT+  + G  +RL  +L+  +P S+K ++++   + ER++ +W+GGSIL S+GTF Q+W+
Sbjct: 422 GTSS-IPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWV 479

Query: 64  SSQEYEEGGKGQVDRKC 80
             +EYEE G  ++    
Sbjct: 480 GKKEYEEVGVERLLNDR 496

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score =  111 bits (279), Expect = 5e-31
 Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
           G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364

Query: 71  GGKGQVDRKC 80
            G   V RKC
Sbjct: 365 AGPSIVHRKC 374

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score = 93.6 bits (233), Expect = 3e-24
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 13/83 (15%)

Query: 11  GFPERLNRDLSVRIPASMKLKLISANG-------------SAERRFGAWIGGSILASIGT 57
            F  RL RDL   + A +KL    + G                +R+  W GGS+LAS   
Sbjct: 330 DFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPE 389

Query: 58  FQQMWISSQEYEEGGKGQVDRKC 80
           F Q+  + ++YEE G        
Sbjct: 390 FYQVCHTKKDYEEIGPSICRHNP 412

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score = 93.7 bits (233), Expect = 3e-24
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 11/81 (13%)

Query: 11  GFPERLNRDLSVRIPASMKLKLISANGSA-----------ERRFGAWIGGSILASIGTFQ 59
            F  RL RDL   +   +    + +   +            +R   W GGS+LA    F 
Sbjct: 341 NFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFG 400

Query: 60  QMWISSQEYEEGGKGQVDRKC 80
               +  +YEE G     R  
Sbjct: 401 SYCHTKADYEEYGASIARRYQ 421

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score = 87.5 bits (217), Expect = 4e-22
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 15/82 (18%)

Query: 11  GFPERLNRDLS-----------VRIPASMKLKLISANGSAERRFGAWIGGSILASI-GTF 58
           G P RL R+L            V   +  K+++        R+   ++GG++LA I    
Sbjct: 312 GLPSRLERELKQLYLERVLKGDVEKLSKFKIRIED---PPRRKHMVFLGGAVLADIMKDK 368

Query: 59  QQMWISSQEYEEGGKGQVDRKC 80
              W++ QEY+E G   +++  
Sbjct: 369 DNFWMTRQEYQEKGVRVLEKLG 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	99.93
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	99.92
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	99.91
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	99.89
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	99.88
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	99.86
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	99.69
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	98.01
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	97.56
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	97.43
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	97.08
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	96.71
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	96.48
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	95.04
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	94.56
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	93.77
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	93.56
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	91.98
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	91.0
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	88.95
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	84.05

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=99.93  E-value=3.1e-27  Score=189.16  Aligned_cols=84  Identities=24%  Similarity=0.500  Sum_probs=78.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCc-----cEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASM-----KLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQ   75 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~-----~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i   75 (102)
                      ||+||+|+||||.+||++||+.++|..+     +|+|+++|+..||++++|+||||||++++|+++||||+||+|+|+++
T Consensus       505 vltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~i  584 (593)
T 4fo0_A          505 LVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRM  584 (593)
T ss_dssp             EEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHH
T ss_pred             EEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHH
Confidence            6899999999999999999999999654     58999976667999999999999999999999999999999999999


Q ss_pred             hhhhccccc
Q psy15064         76 VDRKCPRAF   84 (102)
Q Consensus        76 ~~rk~~~~~   84 (102)
                      |++||.+.|
T Consensus       585 l~~kc~f~~  593 (593)
T 4fo0_A          585 LRERAAFVW  593 (593)
T ss_dssp             HHHHCSSCC
T ss_pred             HhhcCCcCC
Confidence            999999765

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2e-26  Score=184.79  Aligned_cols=79  Identities=34%  Similarity=0.784  Sum_probs=74.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCc-hhhhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGK-GQVDRK   79 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~-~i~~rk   79 (102)
                      ||+||+|+||||.+||++||++++| .++++|+++++++++.+++|+||||||++++|+++||||+||+|+|+ +++++|
T Consensus       418 vLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~k  496 (498)
T 3qb0_A          418 VLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDR  496 (498)
T ss_dssp             EEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHT
T ss_pred             EEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhcccc
Confidence            6999999999999999999999999 88999999544479999999999999999999999999999999999 899999


Q ss_pred             c
Q psy15064         80 C   80 (102)
Q Consensus        80 ~   80 (102)
                      |
T Consensus       497 c  497 (498)
T 3qb0_A          497 F  497 (498)
T ss_dssp             T
T ss_pred             C
Confidence            8

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=3.3e-26  Score=179.96  Aligned_cols=79  Identities=28%  Similarity=0.450  Sum_probs=72.6

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhC--------------CCCccEEEEecCCCCCcccceeehhhhhccccccccccccHH
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRI--------------PASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQ   66 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~--------------p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~   66 (102)
                      ||+||+|+||||.+||++||++++              |..++|+|++   +++|.|++|+|||+||++++|+++||||+
T Consensus       331 vLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~---~~~r~~s~WiGGSilasl~~f~~~witk~  407 (427)
T 3dwl_A          331 VLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVIS---HKRQRNAVWFGGSLLAQTPEFGSYCHTKA  407 (427)
T ss_dssp             EEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEEC---CTTCTTHHHHHHHHHHHSTTHHHHSEEHH
T ss_pred             EEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEec---CCccccceecCceeeccccchhheeEEHH
Confidence            689999999999999999999997              5577899999   78999999999999999999999999999


Q ss_pred             HHhhcCchhhhhhccc
Q psy15064         67 EYEEGGKGQVDRKCPR   82 (102)
Q Consensus        67 eY~E~G~~i~~rk~~~   82 (102)
                      ||+|+|++++++++.+
T Consensus       408 EYeE~G~~iv~~~~~~  423 (427)
T 3dwl_A          408 DYEEYGASIARRYQIF  423 (427)
T ss_dssp             HHHHSCGGGGSCCCC-
T ss_pred             HHhhhChHhheecccc
Confidence            9999999999998773

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=99.89  E-value=2.9e-24  Score=164.58  Aligned_cols=78  Identities=45%  Similarity=0.899  Sum_probs=71.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC   80 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~   80 (102)
                      ||+||+|+||||.+||++||..+.|...+++|..   +++|.+++|+||+++++++.|+++||||+||+|+|++++++||
T Consensus       298 vLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~---~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~  374 (375)
T 2fxu_A          298 VMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC  374 (375)
T ss_dssp             EEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEEC---CTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC---
T ss_pred             EeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEc---CCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhc
Confidence            6899999999999999999999999988899998   7889999999999999999999999999999999999999998


Q ss_pred             c
Q psy15064         81 P   81 (102)
Q Consensus        81 ~   81 (102)
                      +
T Consensus       375 ~  375 (375)
T 2fxu_A          375 F  375 (375)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=99.88  E-value=6.6e-24  Score=163.95  Aligned_cols=78  Identities=29%  Similarity=0.551  Sum_probs=73.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhC----------------CCCccEEEEecCCCCCcccceeehhhhhcccccccccccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRI----------------PASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWIS   64 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~----------------p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~It   64 (102)
                      ||+||+|++|||.+||++||..++                |..++++|..   +++|.+++|+|||++|+++.|+++|||
T Consensus       320 vL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~---~~~~~~~~w~Ggsilasl~~f~~~~it  396 (418)
T 1k8k_A          320 VLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVIT---HHMQRYAVWFGGSMLASTPEFYQVCHT  396 (418)
T ss_dssp             EEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEEC---CTTCTTHHHHHHHHHTTSHHHHHHSEE
T ss_pred             EEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeC---CCccccceeHhHHHHHcCccHhheEEE
Confidence            689999999999999999999886                6677899998   778999999999999999999999999


Q ss_pred             HHHHhhcCchhhhhhcc
Q psy15064         65 SQEYEEGGKGQVDRKCP   81 (102)
Q Consensus        65 k~eY~E~G~~i~~rk~~   81 (102)
                      |+||+|+|++++++||.
T Consensus       397 k~ey~e~G~~~~~~~~~  413 (418)
T 1k8k_A          397 KKDYEEIGPSICRHNPV  413 (418)
T ss_dssp             HHHHHHHCGGGGGCCCC
T ss_pred             HHHHhhhCHHHHhhhcc
Confidence            99999999999999876

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=99.86  E-value=5.8e-23  Score=158.70  Aligned_cols=75  Identities=27%  Similarity=0.569  Sum_probs=28.2

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhC-----------CCCccEEEEecCCCCCcccceeehhhhhccccccc-cccccHHHH
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRI-----------PASMKLKLISANGSAERRFGAWIGGSILASIGTFQ-QMWISSQEY   68 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~-----------p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~-~~~Itk~eY   68 (102)
                      ||+||+|+||||.+||++||..+.           |..++++|..   +++|.+++|+|||+++++++|+ ++||||+||
T Consensus       302 vLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~---~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY  378 (394)
T 1k8k_B          302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIED---PPRRKHMVFLGGAVLADIMKDKDNFWMTRQEY  378 (394)
T ss_dssp             EEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC---------------------------------------
T ss_pred             EEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEec---CCCcceeEEhhhHHhhCCcCCccceeecHHHH
Confidence            689999999999999999999988           8888999998   6789999999999999999999 999999999


Q ss_pred             hhcCchhhhh
Q psy15064         69 EEGGKGQVDR   78 (102)
Q Consensus        69 ~E~G~~i~~r   78 (102)
                      +|+|++++++
T Consensus       379 ~e~G~~~~~~  388 (394)
T 1k8k_B          379 QEKGVRVLEK  388 (394)
T ss_dssp             ----------
T ss_pred             hhhCHHHHHh
Confidence            9999999987

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=99.69  E-value=6.2e-18  Score=139.02  Aligned_cols=56  Identities=20%  Similarity=0.462  Sum_probs=51.9

Q ss_pred             cEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhccccc
Q psy15064         29 KLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKCPRAF   84 (102)
Q Consensus        29 ~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~~~~~   84 (102)
                      +|+|+++|+..||++++|+|||+||+++.|+++||||+||+|.|++++++||.+.|
T Consensus       600 ~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~f~y  655 (655)
T 4am6_A          600 PVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCIFTY  655 (655)
T ss_dssp             CCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCSSCC
T ss_pred             eeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccccCC
Confidence            48999987777889999999999999999999999999999999999999998654

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=98.01  E-value=1.2e-06  Score=65.28  Aligned_cols=48  Identities=17%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc-cccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI-GTFQ   59 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~-~~~~   59 (102)
                      +|+||+|++|||.++|++++..        .+..   +.+|.+++|+|+++++.. +.|+
T Consensus       282 vL~GG~s~~p~l~~~l~~~~~~--------~v~~---~~~p~~ava~Gaa~~a~~~~~~~  330 (344)
T 1jce_A          282 FLTGGGSLLRGLDTLLQKETGI--------SVIR---SEEPLTAVAKGAGMVLDKVNILK  330 (344)
T ss_dssp             EEESGGGCSBTHHHHHHHHHSS--------CEEE---CSSTTTHHHHHHHHGGGCHHHHT
T ss_pred             EEECccccchHHHHHHHHHHCC--------Cccc---cCChHHHHHHHHHHHHhChHHHH
Confidence            5899999999999999999842        2344   568899999999999974 5453

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=97.56  E-value=1.2e-05  Score=57.79  Aligned_cols=42  Identities=19%  Similarity=0.300  Sum_probs=34.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA   53 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila   53 (102)
                      +|+||++++|||.++|++++..        .|..   +.+|.++.++|+++++
T Consensus       231 vL~GG~a~~~~l~~~l~~~l~~--------~v~~---~~~p~~a~a~Gaal~a  272 (272)
T 3h1q_A          231 YVVGGTAYLTGFSEEFSRFLGK--------EVQV---PIHPLLVTPLGIALFG  272 (272)
T ss_dssp             EEESGGGGSTTHHHHHHHHHSS--------CCBC---CSSGGGHHHHHHHTTC
T ss_pred             EEECCccchhhHHHHHHHHhCC--------Cccc---cCChHHHHHHHHHhcC
Confidence            5899999999999999999843        2223   5789999999999864

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=97.43  E-value=1.4e-05  Score=60.18  Aligned_cols=44  Identities=9%  Similarity=0.171  Sum_probs=36.5

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI   55 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~   55 (102)
                      +|+||+|++|++.++|++++..        .+..   +.+|.+++|+|+++++.+
T Consensus       338 vL~GG~s~~p~l~~~l~~~~~~--------~v~~---~~~p~~ava~Gaa~~a~~  381 (383)
T 1dkg_D          338 ILVGGQTRMPMVQKKVAEFFGK--------EPRK---DVNPDEAVAIGAAVQGGV  381 (383)
T ss_dssp             EEESGGGGSHHHHHHHHHHHSS--------CCBC---SSCTTTHHHHHHHHHTTT
T ss_pred             EEecCccccHHHHHHHHHHhCC--------CCCC---CcChHHHHHHHHHHHHHh
Confidence            5899999999999999999852        1233   567899999999998864

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=96.71  E-value=0.00016  Score=57.09  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|++.++|++++..        .+..   +.+|..++|.||++++.
T Consensus       307 vLvGG~s~~p~v~~~l~~~f~~--------~~~~---~~~p~~aVa~Gaa~~a~  349 (509)
T 2v7y_A          307 ILVGGSTRIPAVQEAIKRELGK--------EPHK---GVNPDEVVAIGAAIQGG  349 (509)
T ss_dssp             EEESGGGGCHHHHHHHHHHHSS--------CCBC---CSCTTTHHHHHHHHHHH
T ss_pred             EEECCcccChHHHHHHHHHhCC--------CcCc---CCCchhhhHhhHHHHHH
Confidence            5899999999999999998842        1223   56788999999999885

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=96.48  E-value=0.00039  Score=52.57  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI   55 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~   55 (102)
                      +|+||+|++|++.++|++.+...       .+..   +.+|..+++.|+++++.+
T Consensus       356 vLvGG~s~~p~l~~~l~~~~~~~-------~v~~---~~~p~~ava~Gaa~~a~~  400 (404)
T 3i33_A          356 VLVGGSTRIPKIQKLLQDFFNGK-------ELNK---SINPDEAVAYGAAVQAAI  400 (404)
T ss_dssp             EEESGGGGCHHHHHHHHHHTTTC-------CCBC---SSCTTTHHHHHHHHHHHH
T ss_pred             EEECCccccHHHHHHHHHHcCCC-------CCCC---CcCHHHHHHHHHHHHHHH
Confidence            58999999999999999887321       2333   568899999999998864

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=95.04  E-value=0.0041  Score=49.70  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|++.++|++.+...       .+..   +.+|..+++.|+++++.
T Consensus       335 vLvGG~srip~v~~~l~~~f~~~-------~v~~---~~np~~aVA~Gaa~~a~  378 (554)
T 1yuw_A          335 VLVGGSTRIPKIQKLLQDFFNGK-------ELNK---SINPDEAVAYGAAVQAA  378 (554)
T ss_dssp             EEESGGGGCHHHHHHHHHHTTTC-------CCBC---CSCTTTHHHHHHHHHHH
T ss_pred             EEECCcccChHHHHHHHHHcCCC-------cccc---CCCchhHHHHHHHHHHH
Confidence            58999999999999999887432       1223   56788899999999885

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=94.56  E-value=0.0068  Score=48.99  Aligned_cols=43  Identities=9%  Similarity=0.138  Sum_probs=34.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|++.++|++.+..  +      +..   ..+|..+++.||++.+.
T Consensus       338 vLvGG~srip~v~~~l~~~fg~--~------~~~---~~npd~aVA~GAa~~a~  380 (605)
T 2kho_A          338 ILVGGQTRMPMVQKKVAEFFGK--E------PRK---DVNPDEAVAIGAAVQGG  380 (605)
T ss_dssp             EEESGGGGSHHHHHHHHHHHSS--C------CBC---SSCTTTHHHHHHHHHHT
T ss_pred             EEECCcccChHHHHHHHHhcCC--C------cCc---CCCcchHHHHHHHHHHH
Confidence            5899999999999999988842  1      122   56788899999999885

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=93.77  E-value=0.011  Score=44.82  Aligned_cols=50  Identities=8%  Similarity=0.048  Sum_probs=36.9

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEec---CCCCCcccceeehhhhhcccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISA---NGSAERRFGAWIGGSILASIG   56 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~---~~~~~~~~~aW~Ggsila~~~   56 (102)
                      +|+||+|.+|++.++|++.+..      .++|..|   ....+|..++=.|+++.+...
T Consensus       349 ~LvGG~s~~p~v~~~l~~~f~~------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~  401 (409)
T 4gni_A          349 IMSGGTSNTPRIAANFRYIFPE------STRILAPSTDPSALNPSELQARGAALQASLI  401 (409)
T ss_dssp             EEESGGGGCHHHHHHHHHHSCT------TSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred             EEECCccccHHHHHHHHHHcCC------ccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence            5899999999999999987733      2344322   125677888889999988753

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=93.56  E-value=0.013  Score=48.15  Aligned_cols=43  Identities=12%  Similarity=0.236  Sum_probs=34.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|++|++.++|++.+..        .+..   ..+|..++.+|+++.+.
T Consensus       339 vLvGGssriP~v~~~l~~~fg~--------~~~~---~~nPdeaVA~GAa~~a~  381 (675)
T 3d2f_A          339 EIIGGTTRIPTLKQSISEAFGK--------PLST---TLNQDEAIAKGAAFICA  381 (675)
T ss_dssp             EEESGGGGSHHHHHHHHHHHTS--------CEEC---CSCTTTHHHHHHHHHHH
T ss_pred             EEECCCccChHHHHHHHHhcCC--------Cccc---cCCcchHHHHHHHHHHH
Confidence            5899999999999999988742        1233   56788889999998875

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=91.98  E-value=0.026  Score=40.53  Aligned_cols=43  Identities=16%  Similarity=0.348  Sum_probs=33.0

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||.+..|++.++|++++.        .+++.   |++|.+..=+|++++|.
T Consensus       211 vl~GGva~n~~lr~~l~~~~g--------~~~~~---p~~p~~~~A~GAAl~A~  253 (276)
T 4ehu_A          211 VMVGGVARNSGIVRAMAREIN--------TEIIV---PDIPQLTGALGAALYAF  253 (276)
T ss_dssp             EEESGGGGCHHHHHHHHHHHT--------SCEEC---CSSGGGHHHHHHHHHHH
T ss_pred             EEecCccchHHHHHHHHHHHC--------CCeee---CCCcchHHHHHHHHHHH
Confidence            589999999999999987762        23555   56677765589998873

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=91.00  E-value=0.078  Score=39.44  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             CeeccCCCCCChHHHHHHHHh
Q psy15064          1 MILGTALRLMGFPERLNRDLS   21 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~   21 (102)
                      +|+||++++||+.++|++++.
T Consensus       311 vL~GG~s~~p~l~~~l~~~l~  331 (377)
T 2ych_A          311 YLLGGGSKLRGLASLLTDTLG  331 (377)
T ss_dssp             EEESGGGGSTTHHHHHHHHHT
T ss_pred             EEECccccchhHHHHHHHHhC
Confidence            589999999999999999985

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=88.95  E-value=0.14  Score=39.59  Aligned_cols=48  Identities=13%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEe-----cCC-------CCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLIS-----ANG-------SAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~-----~~~-------~~~~~~~aW~Ggsila~   54 (102)
                      ||+||+|++||+.+.+++.+..      .+++..     |..       ..+|.|++=+|-.+++.
T Consensus       333 vLtGG~s~lpgl~e~~~~~~g~------~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~  392 (419)
T 4a2a_A          333 VLTGGGAKIPRINELATEVFKS------PVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVS  392 (419)
T ss_dssp             EEESGGGGSTTHHHHHHHHHTS------CEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC--
T ss_pred             EEECchhchhhHHHHHHHHHCC------CeEEEecCCCCchhccCcccccCCchHHHHHHHHHHHh
Confidence            5899999999999999988853      233332     111       14677777777766654

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=84.05  E-value=0.24  Score=39.92  Aligned_cols=43  Identities=9%  Similarity=0.145  Sum_probs=31.2

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|.+|++.++|++.+...        +..   ..+|..++=.|+++.+.
T Consensus       338 vLvGG~sriP~v~~~l~~~fg~~--------~~~---~~nPdeaVA~GAai~a~  380 (605)
T 4b9q_A          338 ILVGGQTRMPMVQKKVAEFFGKE--------PRK---DVNPDEAVAIGAAVQGG  380 (605)
T ss_dssp             EEESGGGGSHHHHHHHHHHHTSC--------CCS---SSCTTTHHHHHHHHHHH
T ss_pred             EEeCCccCchHHHHHHHHHhccC--------cCC---CcChhHHHHHhHHHHHH
Confidence            58999999999999999887421        112   34566666678887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	3e-21
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	1e-18

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.5 bits (203), Expect = 3e-21
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANG-------------SAERRFGAWI 47
           +  G+ +    F  RL RDL   + A +KL    + G                +R+  W 
Sbjct: 161 LSGGSTM-FRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWF 219

Query: 48  GGSILASIGTFQQMWISSQEYEEGGKGQVD-RKC 80
           GGS+LAS   F Q+  + ++YEE G         
Sbjct: 220 GGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPV 253

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (184), Expect = 1e-18
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G      G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQ
Sbjct: 152 VMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQ 208

Query: 61  MWISSQEYEEGG 72
           MWI+ QEY+E G
Sbjct: 209 MWITKQEYDEAG 220

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.92
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	98.35
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	97.45
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	95.42
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	93.05
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	92.84
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	85.38

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4e-27  Score=171.47  Aligned_cols=80  Identities=29%  Similarity=0.531  Sum_probs=71.7

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhC----------------CCCccEEEEecCCCCCcccceeehhhhhcccccccccccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRI----------------PASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWIS   64 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~----------------p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~It   64 (102)
                      +|+||+|++|||.+||++||++++                |..++++|++   +++|++++|+|||++|++++|+++|||
T Consensus       160 vl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~---~~~r~~s~W~Ggsila~l~~f~~~~It  236 (258)
T d1k8ka2         160 VLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVIT---HHMQRYAVWFGGSMLASTPEFYQVCHT  236 (258)
T ss_dssp             EEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEEC---CTTCTTHHHHHHHHHTTSHHHHHHSEE
T ss_pred             EEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEec---CCCCCceehHHHHHHHcCccHHhheec
Confidence            589999999999999999998753                4456788888   788999999999999999999999999


Q ss_pred             HHHHhhcCchhhh-hhcccc
Q psy15064         65 SQEYEEGGKGQVD-RKCPRA   83 (102)
Q Consensus        65 k~eY~E~G~~i~~-rk~~~~   83 (102)
                      |+||+|+|+++++ ||||..
T Consensus       237 k~eY~E~G~~iv~~rk~f~~  256 (258)
T d1k8ka2         237 KKDYEEIGPSICRHNPVFGV  256 (258)
T ss_dssp             HHHHHHHCGGGGGCCCCCSC
T ss_pred             HHHHhhhChHHHhcCCCcCC
Confidence            9999999999995 678754

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.6e-26  Score=165.21  Aligned_cols=74  Identities=43%  Similarity=0.877  Sum_probs=71.2

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhh
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVD   77 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~   77 (102)
                      +|+||+|+||||.+||++||.++.|...+++|++   +++|++++|+|||++|+++.|+++||||+||+|+|++++|
T Consensus       152 vl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~---~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         152 VMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             EEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEEC---CTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             EEeCCcccCCchhHHHHhHHHHhhccccceEEec---CCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            5899999999999999999999999999999998   7799999999999999999999999999999999999986

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.35  E-value=3.9e-08  Score=67.27  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCC
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPA   26 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~   26 (102)
                      ||+||+|++|||.+||++||++++|.
T Consensus       149 vl~GG~Sl~pGf~~RL~~EL~~l~p~  174 (190)
T d1k8kb1         149 VLSGGSTMYPGLPSRLERELKQLYLE  174 (190)
T ss_dssp             EEESGGGCSTTHHHHHHHHHHHHHHH
T ss_pred             EEECcccCCCCHHHHHHHHHHHhhhH
Confidence            58999999999999999999999874

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=1.9e-05  Score=52.04  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=34.6

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|.+|++.+++++.+..        .+..   ..+|.+++.+||+++++
T Consensus       142 vLvGGsS~ip~v~~~l~~~fg~--------~v~~---~~~P~~aVA~GAai~~~  184 (196)
T d1jcea2         142 FLTGGGSLLRGLDTLLQKETGI--------SVIR---SEEPLTAVAKGAGMVLD  184 (196)
T ss_dssp             EEESGGGCSBTHHHHHHHHHSS--------CEEE---CSSTTTHHHHHHHHGGG
T ss_pred             EEeCchhcchhHHHHHHHHHCc--------CCcc---CCChHHHHHHHHHHHHH
Confidence            5899999999999999987731        1333   46789999999998774

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.0044  Score=41.29  Aligned_cols=21  Identities=10%  Similarity=0.167  Sum_probs=19.0

Q ss_pred             CeeccCCCCCChHHHHHHHHh
Q psy15064          1 MILGTALRLMGFPERLNRDLS   21 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~   21 (102)
                      +||||+|++|||.+.+++.+.
T Consensus       134 vLtGGgs~l~gl~~~l~~~l~  154 (191)
T d1e4ft2         134 VLTGGGAKIPRINELATEVFK  154 (191)
T ss_dssp             EEESGGGGSTTHHHHHHHHHC
T ss_pred             EEecchhhhhhHHHHHHHHHC
Confidence            589999999999999998775

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=93.05  E-value=0.0049  Score=41.28  Aligned_cols=44  Identities=9%  Similarity=0.165  Sum_probs=32.8

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI   55 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~   55 (102)
                      +|+||+|++|.+.++|++.+...        +..   ..+|..++=.||+++|..
T Consensus       153 ~lvGG~sr~p~l~~~i~~~f~~~--------~~~---~~~p~~aVa~GAa~~aa~  196 (198)
T d1dkgd2         153 ILVGGQTRMPMVQKKVAEFFGKE--------PRK---DVNPDEAVAIGAAVQGGV  196 (198)
T ss_dssp             EEESGGGGSHHHHHHHHHHHSSC--------CBC---SSCTTTHHHHHHHHHTTT
T ss_pred             EEEcCccCCHHHHHHHHHHHCCC--------CCC---CCChHHHHHHHHHHHHHh
Confidence            48999999999999999887421        122   345666777899988753

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.84  E-value=0.0079  Score=39.72  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      +|+||+|.+|.+++.|++-+...       .+..   +.+|..++=.|++++|.
T Consensus       147 ~lvGG~sr~p~v~~~i~~~f~~~-------~i~~---~~~p~~aVa~GaA~~aa  190 (193)
T d1bupa2         147 VLVGGSTRIPKIQKLLQDFFNGK-------ELNK---SINPDEAVAYGAAVQAA  190 (193)
T ss_dssp             EEESGGGGCHHHHHHHHHHTTTC-------CCBC---SSCGGGHHHHHHHHHHH
T ss_pred             EEECCccccHHHHHHHHHHcCCC-------CCCC---CCChHHHHHHHHHHHHH
Confidence            48999999999998888665321       1222   45677788889998875

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=85.38  E-value=0.056  Score=35.55  Aligned_cols=43  Identities=16%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064          1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS   54 (102)
Q Consensus         1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~   54 (102)
                      |+.||.+..++|.++|++.+.        .++..   +..+.++.=+||+++|.
T Consensus       212 v~gGGv~~~~~~~~~l~~~l~--------~~i~~---~~~~~~agaiGAA~lA~  254 (259)
T d1huxa_         212 VMTGGVAQNYGVRGALEEGLG--------VEIKT---SPLAQYNGALGAALYAY  254 (259)
T ss_dssp             EEESGGGGCHHHHHHHHHHHC--------SCEEC---CGGGGGHHHHHHHHHHH
T ss_pred             EEEccccccHHHHHHHHHHHC--------CCEEc---CCCccHHHHHHHHHHHH
Confidence            578999999999999987772        23455   45556555588888874