Psyllid ID: psy15070

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
NNSLGEIDPFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGQSYSIRTDGNLPIQSDYIK
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccEEccccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEccccccccHHHHHHccccEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEccccccccccEEEEEEEEEccccccEEEEEEEEEEEccccccccccEEcccEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccEEEEEccccccccccccccccccccccccEEccccccccEEccccccccccccccccccccEEEEEEcccccccccccccEEEEEcccHHHHHHHHHHHHHcccHHHHHHcccccEEEEcHHccccccccEEEEEEEEccccccEEEEccccccccccccEEEEEEEEccccccEEEEEEEEcccccEEcccccccEEcccEEEEEcccccccccccccccccHcccc
Coil and Loop (DISEMBL)
nnslgeidpfngsklngvyfpdEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGftrgltnedkmNVEWTTWYLMLspnslfnrnlvknpcgqdkfnsWEILnnggngwkvetppfglsqeaqplpddtipsywtkitkdskkatsstntescfvtsygrcskqqwidlgkrkTMLDVIERLNpaivysewfcrrfdcggRYDLRVALLNEAKKLLAYHIHHtdigenfkwqKVENKFENYPSGVRYILFIHEgvdsqfwqghygpkmtratvflippgqsysirtdgnlpiqsdyik
Flexible Loop (DISEMBL)
nnslgeidpfngsklngvYFPDEVLEVILVHMEIRTLLASRRVCKKWKSlietqvlkerailegftrgltnedkMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITkdskkatsstntescfvtsygrcskqqwidlgkrkTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTdigenfkwqKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGqsysirtdgnlpiqsdyik
Low Complexity Region (SEG)
NNSLGEIDPFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGQSYSIRTDGNLPIQSDYIK
Disordered region (IsUnstruct)
***********GSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPF**************PSYWTKI**************SCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGQSYSI**************
Disordered Region (DISOPRED)
***************NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGL*************SYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPP********************
Disordered Region (DISEMBL)
NNSLGEIDPFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKIT**************CFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGQSYSIRTDGNLPIQSDYIK
Disordered Region (DISPRO)
*********FNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPG*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NNSLGEIDPFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGQSYSIRTDGNLPIQSDYIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q923V4	284	F-box only protein 6 OS=R	yes	N/A	0.769	0.834	0.335	1e-36
Q8BK26	255	F-box only protein 44 OS=	yes	N/A	0.779	0.941	0.328	4e-35
Q3SX24	265	F-box only protein 6 OS=B	yes	N/A	0.759	0.883	0.332	7e-35
Q9H4M3	255	F-box only protein 44 OS=	yes	N/A	0.779	0.941	0.324	7e-35
Q9NRD1	293	F-box only protein 6 OS=H	no	N/A	0.811	0.853	0.322	1e-34
Q9QZN4	295	F-box only protein 6 OS=M	no	N/A	0.795	0.830	0.329	1e-34
Q80UW2	297	F-box only protein 2 OS=M	no	N/A	0.75	0.777	0.294	1e-27
Q9UK22	296	F-box only protein 2 OS=H	no	N/A	0.75	0.780	0.287	2e-25
Q17QK6	297	F-box only protein 2 OS=B	no	N/A	0.75	0.777	0.287	4e-25
Q6DIA9	280	F-box only protein 27 OS=	no	N/A	0.727	0.8	0.281	3e-24

>sp|Q923V4|FBX6_RAT F-box only protein 6 OS=Rattus norvegicus GN=Fbxo6 PE=2 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 138/271 (50%), Gaps = 34/271 (12%)

Query: 20  FPDEVLEVILVHMEIRTLLAS-RRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNV 77
            P+ +L  +  H+    LL + R VC  W+ LI+   L K +++ EGF     + D+   
Sbjct: 7   LPENILLELFTHVPAPQLLRNCRLVCSLWRDLIDVMTLWKRKSLREGFV--TKDRDEPVD 64

Query: 78  EWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPD 137
           +W  +Y++ S      RNL++NPC ++   SW I +NGG+ WKVE+ P          PD
Sbjct: 65  DWKIFYILCS----LQRNLLRNPCAEENLRSWRIDSNGGDEWKVESLP---GDHGTSFPD 117

Query: 138 DTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIV 197
             +  Y                    FVTSYG C K Q +DL        +++ + P IV
Sbjct: 118 TKVKKY--------------------FVTSYGMCLKSQMVDLKAEGYSEKLLDTVRPDIV 157

Query: 198 YSEWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSG 254
             +WF  R DCG  Y LRV L +    +LA +      I +  +  WQ++ + F NYP G
Sbjct: 158 VKDWFAPRADCGCTYHLRVQLASADYIVLASFEPPPVTIEQWNDASWQEISHTFSNYPPG 217

Query: 255 VRYILFIHEGVDSQFWQGHYGPKMTRATVFL 285
           VR+ILF H G D+QFW+G YGP++T +++ +
Sbjct: 218 VRHILFQHGGKDTQFWKGWYGPRVTNSSIIV 248

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes. Involved in endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranlocated into the cytosol and promoting their ubiquitination and subsequent degradation. Able to recognize and bind denatured glycoproteins, which are modified with not only high-mannose but also complex-type oligosaccharides. Also recognizes sulfated glycans. Also involved in DNA damage response by specifically recognizing activated CHEK1 (phosphorylated on 'Ser-345'), promoting its ubiquitination and degradation. Ubiquitination of CHEK1 is required to insure that activated CHEK1 does not accumulate as cells progress through S phase, or when replication forks encounter transient impediments during normal DNA replication.
Rattus norvegicus (taxid: 10116)

>sp|Q8BK26|FBX44_MOUSE F-box only protein 44 OS=Mus musculus GN=Fbxo44 PE=1 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 135/274 (49%), Gaps = 34/274 (12%)

Query: 20  FPDEVLEVILVHMEIRTLLA-SRRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNV 77
            P+ +L  + +H+  R LL   R VC  W+ LI+   L K + + EGF     + D+   
Sbjct: 9   LPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFIT--EDWDQPVA 66

Query: 78  EWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPD 137
           +W  +Y + S      RNL+ NPC ++ F  W +  NGG+ WKVE               
Sbjct: 67  DWKIFYFLRS----LQRNLLHNPCAEEGFEFWSLDVNGGDEWKVE--------------- 107

Query: 138 DTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIV 197
                    ++KD +K   +   +  FVTSY  C K Q +DL       ++++   P I 
Sbjct: 108 --------DLSKDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIE 159

Query: 198 YSEWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSG 254
             +WF  R DCG +Y L V LL+ A   L  +      I +  + KW +V + F NYP G
Sbjct: 160 VKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPVMIQQKSDAKWSEVSHTFSNYPPG 219

Query: 255 VRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPP 288
           VRYI F H GVD+ +W G YGP++T +++ + PP
Sbjct: 220 VRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPP 253

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Mus musculus (taxid: 10090)

>sp|Q3SX24|FBX6_BOVIN F-box only protein 6 OS=Bos taurus GN=FBXO6 PE=2 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 137/274 (50%), Gaps = 40/274 (14%)

Query: 20  FPDEVLEVILVHMEIRTLLAS-RRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNV 77
            P+ +L  + +H+  R LL + R VC  W+ LI+   L K + + EG+     + D+   
Sbjct: 9   LPENILLEVFMHVPARQLLRNCRPVCCLWRDLIDLVSLWKRKCLREGYV--TEDWDQPVS 66

Query: 78  EWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPD 137
           +W  +Y + S      RNL++NPC ++   SW+I +NGG+ WKVE+ P          PD
Sbjct: 67  DWKVFYFLCS----LRRNLLRNPCAEEDMKSWKIDSNGGDQWKVESLP---GAHGTGFPD 119

Query: 138 DTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIV 197
             +  Y                    FVTSY  C K Q IDL       +++++  P IV
Sbjct: 120 SKVKKY--------------------FVTSYDMCLKSQIIDLKAEGYWEELLDKFRPDIV 159

Query: 198 YSEWFCRRFDCGGRYDLRVALLNEAKKLLA------YHIHHTDIGENFKWQKVENKFENY 251
             +WF  R DCG  Y +RV L +    +LA        IH  +   + KW +V + F +Y
Sbjct: 160 VKDWFAPRADCGCTYQIRVQLASADYLVLASFEPPPVTIHQWN---DAKWTEVSHTFSDY 216

Query: 252 PSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFL 285
           P GVR+I F H G D+QFW G YGP++T ++V +
Sbjct: 217 PPGVRHIFFQHGGKDTQFWAGWYGPRVTNSSVVI 250

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes. Involved in endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranlocated into the cytosol and promoting their ubiquitination and subsequent degradation. Able to recognize and bind denatured glycoproteins, which are modified with not only high-mannose but also complex-type oligosaccharides. Also recognizes sulfated glycans. Also involved in DNA damage response by specifically recognizing activated CHEK1 (phosphorylated on 'Ser-345'), promoting its ubiquitination and degradation. Ubiquitination of CHEK1 is required to insure that activated CHEK1 does not accumulate as cells progress through S phase, or when replication forks encounter transient impediments during normal DNA replication.

Bos taurus (taxid: 9913)

>sp|Q9H4M3|FBX44_HUMAN F-box only protein 44 OS=Homo sapiens GN=FBXO44 PE=1 SV=3

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 137/274 (50%), Gaps = 34/274 (12%)

Query: 20  FPDEVLEVILVHMEIRTLLAS-RRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNV 77
            P+ +L  +  H+  R LL + R VC  W+ LI+   L K + + EGF     + D+   
Sbjct: 9   LPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFIT--EDWDQPVA 66

Query: 78  EWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPD 137
           +W  +Y + S     +RNL+ NPC ++ F  W +  NGG+ WKVE               
Sbjct: 67  DWKIFYFLRS----LHRNLLHNPCAEEGFEFWSLDVNGGDEWKVE--------------- 107

Query: 138 DTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIV 197
                    +++D +K   +   +  FVTSY  C K Q +DL       ++++   P I 
Sbjct: 108 --------DLSRDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIE 159

Query: 198 YSEWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSG 254
             +WF  R DCG +Y L V LL+ A   L  +      I +  + KW++V + F NYP G
Sbjct: 160 VKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWREVSHTFSNYPPG 219

Query: 255 VRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPP 288
           VRYI F H GVD+ +W G YGP++T +++ + PP
Sbjct: 220 VRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPP 253

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q9NRD1|FBX6_HUMAN F-box only protein 6 OS=Homo sapiens GN=FBXO6 PE=1 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 35/285 (12%)

Query: 9   PFNGSKLNGV-YFPDEVLEVILVHMEIRTLLAS-RRVCKKWKSLIETQVL-KERAILEGF 65
           P + + L+ +   P+ +L  +  H+  R LL + R VC  W+ LI+   L K + + EGF
Sbjct: 4   PHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLREGF 63

Query: 66  TRGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPP 125
                + D+   +W  +Y + S     +RNL++NPC ++   +W+I  NGG+ WKVE+ P
Sbjct: 64  IT--KDWDQPVADWKIFYFLRS----LHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLP 117

Query: 126 FGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTM 185
                     PD  +  Y                    FVTSY  C K Q +DL      
Sbjct: 118 ---GAHGTDFPDPKVKKY--------------------FVTSYEMCLKSQLVDLVAEGYW 154

Query: 186 LDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQ 242
            ++++   P IV  +WF  R DCG  Y L+V L +    +LA +      I +  N  W 
Sbjct: 155 EELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATWT 214

Query: 243 KVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP 287
           +V   F +YP GVRYILF H G D+Q+W G YGP++T +++ + P
Sbjct: 215 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSP 259

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes. Involved in endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranlocated into the cytosol and promoting their ubiquitination and subsequent degradation. Able to recognize and bind denatured glycoproteins, which are modified with not only high-mannose but also complex-type oligosaccharides. Also recognizes sulfated glycans. Also involved in DNA damage response by specifically recognizing activated CHEK1 (phosphorylated on 'Ser-345'), promoting its ubiquitination and degradation. Ubiquitination of CHEK1 is required to insure that activated CHEK1 does not accumulate as cells progress through S phase, or when replication forks encounter transient impediments during normal DNA replication.

Homo sapiens (taxid: 9606)

>sp|Q9QZN4|FBX6_MOUSE F-box only protein 6 OS=Mus musculus GN=Fbxo6 PE=1 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 43/288 (14%)

Query: 20  FPDEVLEVILVHMEIRTLLAS-RRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNV 77
            P+ +L  + +H+    LL + R VC+ W+ LI+   L K +++ EGF    T +    V
Sbjct: 7   LPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGF---FTKDRCEPV 63

Query: 78  E-WTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLP 136
           E W  +Y++ S      RNL++NPC ++  +SW I +NGG+ WKVET P          P
Sbjct: 64  EDWKVFYILCS----LQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTS---FP 116

Query: 137 DDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAI 196
           D+ +  Y                    FVTS+  C K Q +DL       ++++   P I
Sbjct: 117 DNKVKKY--------------------FVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDI 156

Query: 197 VYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENF---KWQKVENKFENYPS 253
           V  +W   R DCG  Y LRV L +    +LA         + +   KWQ++ + F +YP 
Sbjct: 157 VVKDWVAPRADCGCTYQLRVQLASADYIVLASFEPPPVTFQQWNDAKWQEISHTFSDYPP 216

Query: 254 GVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGQSYSIRTDGNLP 301
           GVR+ILF H G D+QFW+G YGP++T +++ +       S RT  N P
Sbjct: 217 GVRHILFQHGGQDTQFWKGWYGPRVTNSSIII-------SHRTAKNPP 257

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes. Involved in DNA damage response by specifically recognizing activated CHEK1 (phosphorylated on 'Ser-345'), promoting its ubiquitination and degradation. Ubiquitination of CHEK1 is required to insure that activated CHEK1 does not accumulate as cells progress through S phase, or when replication forks encounter transient impediments during normal DNA replication (By similarity). Involved in endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranlocated into the cytosol and promoting their ubiquitination and subsequent degradation. Able to recognize and bind denatured glycoproteins, which are modified with not only high-mannose but also complex-type oligosaccharides. Also recognizes sulfated glycans.

Mus musculus (taxid: 10090)

>sp|Q80UW2|FBX2_MOUSE F-box only protein 2 OS=Mus musculus GN=Fbxo2 PE=1 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 34/265 (12%)

Query: 28  ILVHMEIRTLL-ASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVE---WTTWY 83
           +L  +    L+ A R VC +WK L++   L    +L+    GL  E   + E   W  +Y
Sbjct: 62  VLAELPATELVQACRLVCLRWKELVDGAPL---WLLKCQQEGLVPEGSADEERDHWQQFY 118

Query: 84  LMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSY 143
            +    S   RNL++NPCG++    W  + +GG+GW+VE            LP D    +
Sbjct: 119 FL----SKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEE-----------LPGDNGVEF 163

Query: 144 WTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFC 203
                      T   + +  F +S+  C K Q IDL       ++++   PAIV  +W+ 
Sbjct: 164 -----------TQDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYS 212

Query: 204 RRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYILFIH 262
            R D G  Y+L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++ F H
Sbjct: 213 GRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEH 272

Query: 263 EGVDSQFWQGHYGPKMTRATVFLIP 287
            G DS +W+G +G ++T ++V++ P
Sbjct: 273 GGQDSVYWKGWFGARVTNSSVWVEP 297

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranslocated into the cytosol and promoting their ubiquitination and subsequent degradation. Prevents formation of cytosolic aggregates of unfolded glycoproteins that have been retrotranslocated into the cytosol. Able to recognize and bind denatured glycoproteins, preferentially those of the high-mannose type.

Mus musculus (taxid: 10090)

>sp|Q9UK22|FBX2_HUMAN F-box only protein 2 OS=Homo sapiens GN=FBXO2 PE=1 SV=2

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 129/268 (48%), Gaps = 37/268 (13%)

Query: 28  ILVHMEIRTLL-ASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVE---WTTWY 83
           +L  +    L+ A R VC +WK L++   L    +L+    GL  E  +  E   W  +Y
Sbjct: 58  VLAALPAAELVQACRLVCLRWKELVDGAPL---WLLKCQQEGLVPEGGVEEERDHWQQFY 114

Query: 84  LMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSY 143
            +    S   RNL++NPCG++    W  + +GG+GW+VE            LP D+   +
Sbjct: 115 FL----SKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEE-----------LPGDSGVEF 159

Query: 144 WTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFC 203
                      T   + +  F +S+  C K Q IDL       ++++   PAIV  +W+ 
Sbjct: 160 -----------THDESVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYS 208

Query: 204 RRFDCGGRYDLRVALLNEAKKLLAY----HIHHTDIGENFKWQKVENKFENYPSGVRYIL 259
            R D G  Y+L V LL+E + +LA      +      +   W ++ + F +Y  GVR++ 
Sbjct: 209 GRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWMEISHTFTDYGPGVRFVR 268

Query: 260 FIHEGVDSQFWQGHYGPKMTRATVFLIP 287
           F H G DS +W+G +G ++T ++V++ P
Sbjct: 269 FEHGGQDSVYWKGWFGARVTNSSVWVEP 296

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranslocated into the cytosol and promoting their ubiquitination and subsequent degradation. Prevents formation of cytosolic aggregates of unfolded glycoproteins that have been retrotranslocated into the cytosol. Able to recognize and bind denatured glycoproteins, preferentially those of the high-mannose type.

Homo sapiens (taxid: 9606)

>sp|Q17QK6|FBX2_BOVIN F-box only protein 2 OS=Bos taurus GN=FBXO2 PE=2 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 129/268 (48%), Gaps = 37/268 (13%)

Query: 28  ILVHMEIRTLL-ASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVE---WTTWY 83
           +L  +    L+ A R VC +WK L++   L    +L+    GL  +D    E   W  +Y
Sbjct: 59  VLAELPAAQLVQACRLVCLRWKELVDGAPL---WLLKCQQEGLVPQDGPEDERDHWQQFY 115

Query: 84  LMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSY 143
            +    S   RNL++NPCG++    W  + +GG+GW+VE  P     E   + D+++  Y
Sbjct: 116 FL----SKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDCGVEF--IHDESVKKY 169

Query: 144 WTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFC 203
                               F +S+  C K Q IDL       ++++   PAIV  +W+ 
Sbjct: 170 --------------------FASSFEWCRKAQIIDLQAEGYWEELLDTTQPAIVVKDWYS 209

Query: 204 RRFDCGGRYDLRVALLNEAKKLLAY----HIHHTDIGENFKWQKVENKFENYPSGVRYIL 259
            R D G  Y+L V LL+E + +LA      +      ++  W ++ + F +Y  GVR+I 
Sbjct: 210 GRRDAGCLYELTVKLLSEHEDVLAEFNSGQVAVPADSDDGGWTEISHTFTDYGPGVRFIR 269

Query: 260 FIHEGVDSQFWQGHYGPKMTRATVFLIP 287
           F H G D  +W+G +G ++T ++V++ P
Sbjct: 270 FEHGGQDCVYWKGWFGARVTNSSVWVEP 297

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the endoplasmic reticulum-associated degradation pathway (ERAD) for misfolded lumenal proteins by recognizing and binding sugar chains on unfolded glycoproteins that are retrotranslocated into the cytosol and promoting their ubiquitination and subsequent degradation. Prevents formation of cytosolic aggregates of unfolded glycoproteins that have been retrotranslocated into the cytosol. Able to recognize and bind denatured glycoproteins, preferentially those of the high-mannose type.

Bos taurus (taxid: 9913)

>sp|Q6DIA9|FBX27_MOUSE F-box only protein 27 OS=Mus musculus GN=Fbxo27 PE=2 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 125/270 (46%), Gaps = 46/270 (17%)

Query: 31  HMEIRTLLA-SRRVCKKWKSLIETQVL-----------KERAILEGFTRGLTNEDKMNVE 78
           H+  RTLL   RRVC+ W++L++ Q L             RA+L    R L    +    
Sbjct: 37  HVPPRTLLMHCRRVCRAWRALVDGQALWLLLLARDHSAAGRALLTLARRCLPPAHEDTPC 96

Query: 79  WTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDD 138
               +  L P     RNL+ NPCGQ+    W ++ +GG+GW VE                
Sbjct: 97  PLGQFCALRP---LGRNLISNPCGQEGLRKW-MVRHGGDGWVVEK--------------- 137

Query: 139 TIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVY 198
                       ++K      +++CFVTS+  C K+Q +DL ++    ++++     I  
Sbjct: 138 ------------NRKPVPGAPSQTCFVTSFSWCRKKQVVDLVEKGLWPELLDSGGVEIAV 185

Query: 199 SEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFK---WQKVENKFENYPSGV 255
           S+W+  R D G +Y L V LL+  + ++       D  E +    + +V + F     G+
Sbjct: 186 SDWWGARHDSGCKYRLFVTLLDAHQNVIDKFSAVPDPIEQWNNDIYLQVTHVFSGIRRGI 245

Query: 256 RYILFIHEGVDSQFWQGHYGPKMTRATVFL 285
           R++ F H G D+QFW GHYG ++T ++V +
Sbjct: 246 RFVSFEHWGQDTQFWAGHYGARVTNSSVII 275

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex (By similarity). Able to recognize and bind complex-type oligosaccharides.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
380028482	305	PREDICTED: F-box only protein 6-like iso	0.827	0.836	0.385	1e-42
328791817	306	PREDICTED: f-box only protein 6-like iso	0.886	0.892	0.369	3e-42
242020258	271	F-box only protein, putative [Pediculus	0.824	0.937	0.368	1e-39
350419036	286	PREDICTED: F-box only protein 6-like [Bo	0.827	0.891	0.370	4e-39
340708925	286	PREDICTED: LOW QUALITY PROTEIN: f-box on	0.827	0.891	0.370	5e-39
345482742	302	PREDICTED: F-box only protein 6-like [Na	0.824	0.841	0.373	1e-37
431906326	269	F-box only protein 6 [Pteropus alecto]	0.775	0.888	0.338	7e-37
355688397	258	F-box protein 6 [Mustela putorius furo]	0.775	0.926	0.340	3e-36
347543809	265	F-box protein 6 [Sus scrofa]	0.769	0.894	0.339	4e-36
321459320	276	hypothetical protein DAPPUDRAFT_300481 [	0.821	0.916	0.340	4e-36

>gi|380028482|ref|XP_003697929.1| PREDICTED: F-box only protein 6-like isoform 1 [Apis florea]

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/280 (38%), Positives = 154/280 (55%), Gaps = 25/280 (8%)

Query: 11  NGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLT 70
           NG  + G Y P+E+L  I  +++  +LL  + VCK WK+LI+T V +++A +  F R L 
Sbjct: 23  NGLIVGGKYLPEELLAEIFCYVDYNSLLNCQLVCKLWKNLIQTYVWRKKAEII-FGRSLL 81

Query: 71  NEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQ 130
            + +  V W T+YLM      F RNL+KN  G+     W+IL+ GG+ WKVE PP G+S 
Sbjct: 82  FDKE--VPWHTYYLMCKKKP-FERNLIKNHSGEYGTQKWKILDEGGDRWKVENPPIGVS- 137

Query: 131 EAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIE 190
              PLP++              +A    N + CFVTSY RC+K Q IDL        V++
Sbjct: 138 ---PLPNN--------------EAIFKGN-QFCFVTSYRRCTKAQVIDLEIEGLTSYVLD 179

Query: 191 RLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFK--WQKVENKF 248
            L P IV SEW+  R+DC   Y+ ++ LL E  K++     H  I E  +  W ++ ++F
Sbjct: 180 NLQPLIVVSEWYSCRWDCPAIYECKIKLLGEDNKIIDSFEFHDSIEEEKQNEWHQILHEF 239

Query: 249 ENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPP 288
           +NY  G+R I F H G D  FW GHYG KM  A V++  P
Sbjct: 240 KNYGPGLRRICFCHGGTDKLFWAGHYGSKMAGACVYVKIP 279

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791817|ref|XP_001120930.2| PREDICTED: f-box only protein 6-like isoform 1 [Apis mellifera]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 159/298 (53%), Gaps = 25/298 (8%)

Query: 11  NGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLT 70
           NG  + G Y P+E+L  I  +++  +LL  + VCK WK+LI+T V +++A +  F R L 
Sbjct: 23  NGLIVGGKYLPEELLAEIFCYVDYNSLLNCQLVCKLWKNLIQTYVWRKKAEII-FGRSLL 81

Query: 71  NEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQ 130
            + +  V W T+YLM      F RNL+KN  G+     W+IL+ GG+ WKVE PP G+S 
Sbjct: 82  FDKE--VSWHTYYLMCKKKP-FERNLIKNHSGEYGTQKWKILDEGGDRWKVENPPIGVS- 137

Query: 131 EAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIE 190
              PLP++              +A    N + CFVTSY RC+K Q IDL        V++
Sbjct: 138 ---PLPNN--------------EAIFKGN-QFCFVTSYRRCTKAQIIDLEIEGLTSYVLD 179

Query: 191 RLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFK--WQKVENKF 248
            L P IV SEW+  R+DC   Y+ ++ LL E  K++     H  I E  +  W ++ ++F
Sbjct: 180 NLQPLIVVSEWYSCRWDCPAIYECKIKLLGEDNKIIDSFEFHDSIEEEKQNEWHQILHEF 239

Query: 249 ENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPPGQSYSIRTDGNLPIQSDY 306
           +NY  G+R I F H G D  FW GHYG KM  A V +  P   +    + N+    +Y
Sbjct: 240 KNYGPGLRRICFCHGGTDKLFWAGHYGSKMAGACVCVKIPIVQFRNSEEINMLSNKNY 297

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020258|ref|XP_002430572.1| F-box only protein, putative [Pediculus humanus corporis] gi|212515744|gb|EEB17834.1| F-box only protein, putative [Pediculus humanus corporis]

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/282 (36%), Positives = 159/282 (56%), Gaps = 28/282 (9%)

Query: 11  NGSKLNGVY-FPDEVLEVILVHMEIRTLL-ASRRVCKKWKSLIETQVLKERAILEGFTRG 68
           NG  L   Y  P+E+L +IL H+  + L+   RR+CK W ++I++ V + +       R 
Sbjct: 8   NGYVLCKKYCIPEEILALILSHVPAKKLVFDCRRICKYWCNVIDSLVWRIK-----LKRM 62

Query: 69  LTNEDKM-NVEW--TTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPP 125
               +K+  + W    W ++ +P    +RNLVKN CGQ+    W+IL++GG+GW +E PP
Sbjct: 63  KIPPNKVVELPWYNCFWIVIKTP---LDRNLVKNNCGQEGLKYWKILSSGGDGWAIEKPP 119

Query: 126 FGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTM 185
            G   E  P  ++    Y  K         S  N +SCF TSY  C+K Q IDL K    
Sbjct: 120 VGC--EDFPKSEEV---YLNK--------CSILNHKSCFATSYYSCTKMQIIDLKKEGAC 166

Query: 186 LDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIG--ENFKWQK 243
            +++++L P I  ++W C RFDC   Y+L+V L+N+  + +A      ++G  +  +WQ+
Sbjct: 167 SELLDKLKPQITINDWCCGRFDCNSIYELKVKLVNDKFETVADFEVRKNLGLADGSQWQR 226

Query: 244 VENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFL 285
           + + F +Y SGV++I F H G+DSQFW+GHYG KMT A V L
Sbjct: 227 ISHTFIDYGSGVKFIEFYHGGMDSQFWKGHYGSKMTGALVTL 268

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419036|ref|XP_003492049.1| PREDICTED: F-box only protein 6-like [Bombus impatiens]

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 154/286 (53%), Gaps = 31/286 (10%)

Query: 11  NGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLT 70
           NG  L G Y P+E+L  I  +++ ++LL  + VCK WK LI+T V +++A +  F R L 
Sbjct: 21  NGLVLGGKYLPEELLAEIFCYVDYKSLLNCQLVCKLWKILIQTYVWRKKAEIS-FGRSLL 79

Query: 71  NEDKMNVEWTTWYLMLSPNSLFNRNLVKN---PCGQDKFNSWEILNNGGNGWKVETPPFG 127
              +  V W  +YLM      F RNLVKN    CG+DK+  W+IL+ GG+ WKVE PP G
Sbjct: 80  LYKE--VPWHVYYLMCKKKP-FERNLVKNHSGECGRDKY--WKILSEGGDCWKVENPPVG 134

Query: 128 LSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLD 187
           +     PLP++ +                    + CFVTS+  C+K Q IDL        
Sbjct: 135 VP----PLPNNEL---------------IFEGKQFCFVTSHQSCTKAQIIDLEVEGLTPY 175

Query: 188 VIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLL-AYHIHHTDIGE-NFKWQKVE 245
           +++ L P IV SEW+  R+DC   Y+  + LL +   ++  +H   +  GE   +W ++ 
Sbjct: 176 ILDELQPIIVVSEWYSCRWDCPAIYECAIKLLGKNNSVIDLFHFRDSIEGEKQNQWHQMS 235

Query: 246 NKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFL-IPPGQ 290
           ++F+NY  G+R I F H G D  FW GHYG KM  A V++ IP  Q
Sbjct: 236 HEFKNYGPGLRKISFYHGGADKLFWAGHYGSKMAGACVYVKIPTCQ 281

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708925|ref|XP_003393067.1| PREDICTED: LOW QUALITY PROTEIN: f-box only protein 6-like [Bombus terrestris]

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 154/286 (53%), Gaps = 31/286 (10%)

Query: 11  NGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLT 70
           NG  L G Y P+E+L  I  +++ ++LL  + VCK WK LI+T V +++A +  F R L 
Sbjct: 21  NGLVLGGKYLPEELLAEIFCYVDYKSLLNCQLVCKLWKILIQTYVWRKKAEIS-FGRSLL 79

Query: 71  NEDKMNVEWTTWYLMLSPNSLFNRNLVKN---PCGQDKFNSWEILNNGGNGWKVETPPFG 127
              +  V W  +YLM      F RNLVKN    CG+ K+  W+I++ GG+ WKVE PP G
Sbjct: 80  LYKE--VPWHVYYLMCKKKP-FERNLVKNHSGECGRHKY--WKIISEGGDCWKVENPPVG 134

Query: 128 LSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLD 187
           ++    PLP++ +                    + CFVTSY  C+K Q IDL        
Sbjct: 135 VT----PLPNNEL---------------IFEGKQFCFVTSYRSCTKAQIIDLEVEGLTPY 175

Query: 188 VIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLL-AYHIHHTDIGE-NFKWQKVE 245
           +++ L P IV SEW+  R+DC   Y+  + LL E   ++  +H   +  GE   +W ++ 
Sbjct: 176 MLDELQPIIVVSEWYSCRWDCPALYECVIKLLGENNSVIDLFHFRDSIEGEKQNQWHQMS 235

Query: 246 NKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFL-IPPGQ 290
           ++F+NY  G+R I F H G D  FW GHYG KM  A V++ IP  Q
Sbjct: 236 HEFKNYGPGLRKISFYHGGADKLFWAGHYGSKMAGACVYVKIPTCQ 281

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482742|ref|XP_001600314.2| PREDICTED: F-box only protein 6-like [Nasonia vitripennis]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/284 (37%), Positives = 146/284 (51%), Gaps = 30/284 (10%)

Query: 11  NGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLT 70
           NG  +   Y P+E+L  IL +++ +TL   + VCK+W  LI+  V +++A     T G T
Sbjct: 26  NGLIIRENYIPEELLCEILCYVDHKTLCNCQLVCKQWLELIQGYVWRKKA---ERTLGKT 82

Query: 71  NEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNS-WEILNNGGNGWKVETPPFGLS 129
                N  WT +Y +    + F RNL+KN  G+ + NS W I+N+GG+GWKVE PP G+ 
Sbjct: 83  LPVDENAPWTMYYFICDKKA-FGRNLIKNHSGKTRVNSDWTIVNDGGDGWKVENPPVGVP 141

Query: 130 QEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVI 189
                LPDD +                    + CFVTSY RC KQQ IDL        ++
Sbjct: 142 ----ALPDDPV----------------FEGKQCCFVTSYDRCCKQQTIDLLDEGFTEYLL 181

Query: 190 ERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKL----LAYHIHHTDIGE-NFKWQKV 244
           + L P I  SEW+  R+DC   Y   V LL + + L     +Y+      GE   +W K 
Sbjct: 182 DNLQPTIKVSEWYSSRWDCPALYVCTVELLQKGEGLSDVIQSYNFSKILEGEEQNQWFKF 241

Query: 245 ENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIPP 288
           E++F+NY  G+R I F H G D  FW G+YG KM  A V L  P
Sbjct: 242 EHEFKNYGPGLRKISFSHGGQDRSFWSGYYGSKMAGACVKLEIP 285

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|431906326|gb|ELK10523.1| F-box only protein 6 [Pteropus alecto]

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 138/272 (50%), Gaps = 33/272 (12%)

Query: 20  FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNVE 78
            P+  L  +  H+  R LL  RRVC  W+ LI+ Q L K +++ +GF     NE   N  
Sbjct: 9   LPENFLLEVFTHVPARHLLRCRRVCSLWRDLIDVQSLWKRKSLRKGFITKDWNEPVAN-- 66

Query: 79  WTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDD 138
           W  ++ + S      RNL++NPC +D   SW+I  NGGN WKVET P          PD 
Sbjct: 67  WKIFFFLCS----LRRNLLRNPCAEDDMTSWQIDFNGGNQWKVETLP---GAHGTDFPDS 119

Query: 139 TIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVY 198
            +  Y                    FVTS+  C K Q +DL       ++++   P IV 
Sbjct: 120 KVKKY--------------------FVTSFALCLKSQLVDLKAEGYWEELLDTFRPDIVV 159

Query: 199 SEWFCRRFDCGGRYDLRVALLN-EAKKLLAYHIHHTDIGE--NFKWQKVENKFENYPSGV 255
            +WF  R DCG  Y +RV L++ +   L ++      I +  + +W++V + F +YP GV
Sbjct: 160 KDWFAARADCGCTYSIRVQLVSADYIALASFEPPPVTIDQWNDARWREVSHTFSDYPPGV 219

Query: 256 RYILFIHEGVDSQFWQGHYGPKMTRATVFLIP 287
           R+ILF H G D+Q+W G YGP++T +++ + P
Sbjct: 220 RHILFQHGGNDTQYWAGWYGPRVTNSSIIISP 251

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355688397|gb|AER98489.1| F-box protein 6 [Mustela putorius furo]

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 136/273 (49%), Gaps = 34/273 (12%)

Query: 20  FPDEVLEVILVHMEIRTLLA-SRRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNV 77
            P+ +L  +  H   R LL   R VC  W+ LI+   L K + + EGF     + D+   
Sbjct: 9   LPENILLEVFTHAPARQLLLRCRLVCSLWRDLIDLVTLWKRKCLREGFIT--EDWDQPVA 66

Query: 78  EWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPD 137
           +W  +Y + S      RNL++NPC ++   SW+I +NGGN WKVE+ P          PD
Sbjct: 67  DWKVFYFLCS----LRRNLLRNPCAEEDLTSWQIDSNGGNEWKVESLP---GDHGTDFPD 119

Query: 138 DTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIV 197
             +  Y                    FVTS+G C K Q +DL       D+++   P I 
Sbjct: 120 SKVKKY--------------------FVTSFGMCLKSQLVDLKAEGYWEDLLDTFRPEIE 159

Query: 198 YSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIH---HTDIGENFKWQKVENKFENYPSG 254
             +WF  R DCG  Y +RV L++E   +LA         D   + +W +V + F +YPSG
Sbjct: 160 VKDWFAARADCGCTYHIRVQLVSENYIVLASFEPPPVTIDQWNSAEWTEVSHTFSDYPSG 219

Query: 255 VRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP 287
           VR+ILF H G D+QFW G YGP++T +++ + P
Sbjct: 220 VRHILFQHGGKDTQFWAGWYGPRVTNSSIIITP 252

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|347543809|ref|NP_001231561.1| F-box protein 6 [Sus scrofa]

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 138/271 (50%), Gaps = 34/271 (12%)

Query: 20  FPDEVLEVILVHMEIRTLLAS-RRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNV 77
            P+ +L  +  H+  R LL + R VC  W+ LI+   L K + + EGF     + D+   
Sbjct: 9   LPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVA--EDWDQPVA 66

Query: 78  EWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPD 137
           +W  +Y + S      RNL++NPC +D   SW+I +NGGN WKVE+ P          PD
Sbjct: 67  DWKVFYFLCS----LRRNLLRNPCAEDDMTSWKIDSNGGNHWKVESLP---GAHGTDFPD 119

Query: 138 DTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIV 197
             +  Y                    FVTSYG C K Q IDL       +++++  P IV
Sbjct: 120 SKVKKY--------------------FVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIV 159

Query: 198 YSEWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSG 254
             +WF  R DCG  Y +RV L +    +LA +      I +  + +W +V + F +YP G
Sbjct: 160 VKDWFAARADCGCTYHIRVQLASADYIVLASFEPPPVTIPQWNDARWTEVSHTFSDYPPG 219

Query: 255 VRYILFIHEGVDSQFWQGHYGPKMTRATVFL 285
           VR+ILF H G D+Q+W G YGP++T +++ +
Sbjct: 220 VRHILFQHGGKDTQYWAGWYGPRVTNSSIIV 250

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321459320|gb|EFX70375.1| hypothetical protein DAPPUDRAFT_300481 [Daphnia pulex]

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 146/279 (52%), Gaps = 26/279 (9%)

Query: 13  SKLNGVYFPD-----EVLEVILVHMEIRTLLAS-RRVCKKWKSLIETQVLKERAILEGFT 66
           +  NG+YF D     E++  IL+H++ RT + S R VCK+W S+I   +  +        
Sbjct: 11  ADCNGLYFRDLYIAKELVSFILLHVDHRTTIGSCRLVCKQWNSIITDPLFWKHKTASENK 70

Query: 67  RGLTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPF 126
           +        ++ W+ +Y  +  ++   RNL+ NP G+DK   W +L+ GG+G+  E+PP 
Sbjct: 71  KWPNVPRNKHIPWS-FYASVYLDNPIGRNLILNPSGRDKLKHWIVLSKGGDGFAYESPPV 129

Query: 127 GLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTML 186
           G ++         +P    +   +SK   ++     CF TSY  CSK+Q IDL   +   
Sbjct: 130 GSNE---------VP---VEAQNESKLVENA-----CFATSYHSCSKEQIIDLSALRIPP 172

Query: 187 DVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIG--ENFKWQKV 244
           +VI++  P I   +W+  RFDCG  Y+   +LL+EAK ++        I   E  +W KV
Sbjct: 173 EVIKQCKPKIHIKDWYAGRFDCGCVYECVFSLLDEAKNVIDEFKFRATINQWEGREWHKV 232

Query: 245 ENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATV 283
           E+ F  YP  VR+I F H G D Q W GHYG KMT ++V
Sbjct: 233 EHCFSEYPDNVRFIKFYHGGTDRQLWAGHYGAKMTGSSV 271

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
UNIPROTKB|F1RF93	265	FBXO6 "Uncharacterized protein	0.396	0.460	0.392	4.6e-40
RGD|620418	284	Fbxo6 "F-box protein 6" [Rattu	0.415	0.450	0.396	5.8e-40
RGD|1562463	271	Fbxo44 "F-box protein 44" [Rat	0.461	0.523	0.379	2.5e-39
UNIPROTKB|F1NJI6	266	FBXO6 "Uncharacterized protein	0.438	0.507	0.384	2.5e-39
UNIPROTKB|Q9H4M3	255	FBXO44 "F-box only protein 44"	0.461	0.556	0.365	3.2e-39
MGI|MGI:1354744	255	Fbxo44 "F-box protein 44" [Mus	0.461	0.556	0.372	3.2e-39
UNIPROTKB|A7MBH8	255	FBXO44 "FBXO44 protein" [Bos t	0.461	0.556	0.372	4e-39
UNIPROTKB|F1RF92	255	FBXO44 "Uncharacterized protei	0.461	0.556	0.365	1.1e-38
UNIPROTKB|J9NXM2	315	FBXO6 "Uncharacterized protein	0.402	0.393	0.385	4.5e-38
MGI|MGI:1354743	295	Fbxo6 "F-box protein 6" [Mus m	0.461	0.481	0.346	9.3e-38

UNIPROTKB|F1RF93 FBXO6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 49/125 (39%), Positives = 74/125 (59%)

Query:   164 FVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAK 223
             FVTSYG C K Q IDL       +++++  P IV  +WF  R DCG  Y +RV L +   
Sbjct:   126 FVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLASADY 185

Query:   224 KLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTR 280
              +LA +      I +  + +W +V + F +YP GVR+ILF H G D+Q+W G YGP++T 
Sbjct:   186 IVLASFEPPPVTIPQWNDARWTEVSHTFSDYPPGVRHILFQHGGKDTQYWAGWYGPRVTN 245

Query:   281 ATVFL 285
             +++ +
Sbjct:   246 SSIIV 250

GO:0030163 "protein catabolic process" evidence=IEA

RGD|620418 Fbxo6 "F-box protein 6" [Rattus norvegicus (taxid:10116)]

 Score = 258 (95.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 52/131 (39%), Positives = 76/131 (58%)

Query:   158 TNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVA 217
             T  +  FVTSYG C K Q +DL        +++ + P IV  +WF  R DCG  Y LRV 
Sbjct:   118 TKVKKYFVTSYGMCLKSQMVDLKAEGYSEKLLDTVRPDIVVKDWFAPRADCGCTYHLRVQ 177

Query:   218 LLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHY 274
             L +    +LA +      I +  +  WQ++ + F NYP GVR+ILF H G D+QFW+G Y
Sbjct:   178 LASADYIVLASFEPPPVTIEQWNDASWQEISHTFSNYPPGVRHILFQHGGKDTQFWKGWY 237

Query:   275 GPKMTRATVFL 285
             GP++T +++ +
Sbjct:   238 GPRVTNSSIIV 248

GO:0001948 "glycoprotein binding" evidence=ISO;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0006516 "glycoprotein catabolic process" evidence=IEA;ISO

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS

GO:0030246 "carbohydrate binding" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

RGD|1562463 Fbxo44 "F-box protein 44" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 55/145 (37%), Positives = 81/145 (55%)

Query:   147 ITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRF 206
             ++KD +K   +   +  FVTSY  C K Q +DL       ++++   P I   +WF  R 
Sbjct:   125 LSKDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARP 184

Query:   207 DCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHE 263
             DCG +Y L V LL+ A   L  +      I +  + KW++V + F NYP GVRYI F H 
Sbjct:   185 DCGSKYQLCVQLLSSAHAPLGTFQPDPVMIQQKSDAKWREVSHTFSNYPPGVRYIWFQHG 244

Query:   264 GVDSQFWQGHYGPKMTRATVFLIPP 288
             GVD+ +W G YGP++T ++V + PP
Sbjct:   245 GVDTHYWAGWYGPRVTNSSVIIGPP 269

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA;ISO

GO:0030163 "protein catabolic process" evidence=IEA

UNIPROTKB|F1NJI6 FBXO6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 53/138 (38%), Positives = 78/138 (56%)

Query:   153 KATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRY 212
             K    +     FVTS+G C K Q I L K     ++++   P IV  +W+  RFDCG RY
Sbjct:   119 KELPDSEVRKYFVTSFGPCFKSQLITLKKEGYWNELMDEKRPEIVVKDWYAARFDCGCRY 178

Query:   213 DLRVALLNEAKKLLAYHIHHTDIGENFK---WQKVENKFENYPSGVRYILFIHEGVDSQF 269
             +LRV LL+E   +L        + E +    W+++ + F NYP+GVRYI F H G D+QF
Sbjct:   179 ELRVRLLSENYIVLDEFCPEPVVIEQWSDAMWREISHTFSNYPAGVRYIWFQHGGQDTQF 238

Query:   270 WQGHYGPKMTRATVFLIP 287
             W G YG ++T +++ + P
Sbjct:   239 WAGWYGIRVTNSSITIGP 256

GO:0030163 "protein catabolic process" evidence=IEA

UNIPROTKB|Q9H4M3 FBXO44 "F-box only protein 44" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 53/145 (36%), Positives = 81/145 (55%)

Query:   147 ITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRF 206
             +++D +K   +   +  FVTSY  C K Q +DL       ++++   P I   +WF  R 
Sbjct:   109 LSRDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARP 168

Query:   207 DCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHE 263
             DCG +Y L V LL+ A   L  +      I +  + KW++V + F NYP GVRYI F H 
Sbjct:   169 DCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWREVSHTFSNYPPGVRYIWFQHG 228

Query:   264 GVDSQFWQGHYGPKMTRATVFLIPP 288
             GVD+ +W G YGP++T +++ + PP
Sbjct:   229 GVDTHYWAGWYGPRVTNSSITIGPP 253

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

MGI|MGI:1354744 Fbxo44 "F-box protein 44" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 54/145 (37%), Positives = 80/145 (55%)

Query:   147 ITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRF 206
             ++KD +K   +   +  FVTSY  C K Q +DL       ++++   P I   +WF  R 
Sbjct:   109 LSKDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARP 168

Query:   207 DCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHE 263
             DCG +Y L V LL+ A   L  +      I +  + KW +V + F NYP GVRYI F H 
Sbjct:   169 DCGSKYQLCVQLLSSAHAPLGTFQPDPVMIQQKSDAKWSEVSHTFSNYPPGVRYIWFQHG 228

Query:   264 GVDSQFWQGHYGPKMTRATVFLIPP 288
             GVD+ +W G YGP++T +++ + PP
Sbjct:   229 GVDTHYWAGWYGPRVTNSSITIGPP 253

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0030163 "protein catabolic process" evidence=IEA

UNIPROTKB|A7MBH8 FBXO44 "FBXO44 protein" [Bos taurus (taxid:9913)]

 Score = 263 (97.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 54/145 (37%), Positives = 81/145 (55%)

Query:   147 ITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRF 206
             ++KD +K   +   +  FVTSY  C K Q +DL       ++++   P I   +WF  R 
Sbjct:   109 LSKDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARP 168

Query:   207 DCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHE 263
             DCG +Y L V LL+ A   L  +      I +  + KW++V + F NYP GVRYI F H 
Sbjct:   169 DCGSKYQLCVQLLSSAHAPLGTFQPDPAMIQQKSDAKWREVSHTFSNYPPGVRYIWFQHG 228

Query:   264 GVDSQFWQGHYGPKMTRATVFLIPP 288
             GVD+ +W G YGP++T +++ + PP
Sbjct:   229 GVDTHYWAGWYGPRVTNSSITIGPP 253

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

UNIPROTKB|F1RF92 FBXO44 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 260 (96.6 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 53/145 (36%), Positives = 81/145 (55%)

Query:   147 ITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRF 206
             +++D +K   +   +  FVTSY  C K Q +DL       ++++   P I   +WF  R 
Sbjct:   109 LSRDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARP 168

Query:   207 DCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHE 263
             DCG +Y L V LL+ A   L  +      I +  + KW++V + F NYP GVRYI F H 
Sbjct:   169 DCGSKYQLCVQLLSSAHAPLGTFQPDPAMIQQKSDAKWREVSHTFSNYPPGVRYIWFQHG 228

Query:   264 GVDSQFWQGHYGPKMTRATVFLIPP 288
             GVD+ +W G YGP++T +++ + PP
Sbjct:   229 GVDTHYWAGWYGPRVTNSSITIGPP 253

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

UNIPROTKB|J9NXM2 FBXO6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 244 (91.0 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 49/127 (38%), Positives = 74/127 (58%)

Query:   164 FVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAK 223
             FVTSY  C K Q +DL       ++++ + P IV  +WF  R DCG  Y +RV L +   
Sbjct:   157 FVTSYEMCLKSQLVDLKAEGYWEELLDTVRPEIVVKDWFAARADCGCTYHIRVQLASADY 216

Query:   224 KLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTR 280
              +LA +      + +  + KW +V + F +YP GVR+ILF H G D+QFW G YGP++T 
Sbjct:   217 IVLASFEPPPVTVDQWNSAKWTEVSHTFSDYPPGVRHILFQHGGQDTQFWAGWYGPRVTN 276

Query:   281 ATVFLIP 287
             +++ + P
Sbjct:   277 SSIVIGP 283

GO:0030163 "protein catabolic process" evidence=IEA

MGI|MGI:1354743 Fbxo6 "F-box protein 6" [Mus musculus (taxid:10090)]

 Score = 235 (87.8 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 51/147 (34%), Positives = 77/147 (52%)

Query:   144 WTKITKDSKKATS--STNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEW 201
             W   T      TS      +  FVTS+  C K Q +DL       ++++   P IV  +W
Sbjct:   102 WKVETLPGSCGTSFPDNKVKKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDW 161

Query:   202 FCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGE--NFKWQKVENKFENYPSGVRYI 258
                R DCG  Y LRV L +    +LA +        +  + KWQ++ + F +YP GVR+I
Sbjct:   162 VAPRADCGCTYQLRVQLASADYIVLASFEPPPVTFQQWNDAKWQEISHTFSDYPPGVRHI 221

Query:   259 LFIHEGVDSQFWQGHYGPKMTRATVFL 285
             LF H G D+QFW+G YGP++T +++ +
Sbjct:   222 LFQHGGQDTQFWKGWYGPRVTNSSIII 248

GO:0001948 "glycoprotein binding" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006516 "glycoprotein catabolic process" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;IDA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SX24	FBX6_BOVIN	No assigned EC number	0.3321	0.7597	0.8830	yes	N/A
Q923V4	FBX6_RAT	No assigned EC number	0.3357	0.7694	0.8345	yes	N/A
Q8BK26	FBX44_MOUSE	No assigned EC number	0.3284	0.7792	0.9411	yes	N/A
Q9H4M3	FBX44_HUMAN	No assigned EC number	0.3248	0.7792	0.9411	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	308
pfam04300	184	pfam04300, FBA, F-box associated region	2e-35
pfam00646	48	pfam00646, F-box, F-box domain	7e-07
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	1e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	7e-05

>gnl|CDD|218015 pfam04300, FBA, F-box associated region

 Score =  125 bits (316), Expect = 2e-35
 Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 27/199 (13%)

Query: 92  FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDS 151
             RNL++NPCG++  + W I + GG+GWKVE  P          PD              
Sbjct: 10  LRRNLLRNPCGEEDLSGWSI-DEGGDGWKVEELPGDNGTI---FPDA-----------KV 54

Query: 152 KKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGR 211
           KK         CFVTS+  C K+Q +DL       ++++   P IV  +W+  R DCG  
Sbjct: 55  KK---------CFVTSFEWCRKEQVVDLKAEGLWEELLDTFQPDIVVKDWYEERADCGCI 105

Query: 212 YDLRVALLNEAKKLLAYHIHHTD-IGENF--KWQKVENKFENYPSGVRYILFIHEGVDSQ 268
           Y L V LL+  + +LA          +     W++V + F +Y  GVRY+ F H G D+Q
Sbjct: 106 YQLTVQLLSADETVLAEFTPPPVEDPQWNDHNWKEVSHVFSDYGPGVRYVHFEHGGQDTQ 165

Query: 269 FWQGHYGPKMTRATVFLIP 287
           FW+G +G ++T ++V + P
Sbjct: 166 FWKGWFGARVTNSSVIVKP 184

Members of this family are associated with F-box domains, hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Human FBXO2 is involved in binding to N-glycosylated proteins. Length = 184

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAIL 62
           PD++L  IL  ++ + LL    V K+W+SL+++  L ++ +L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLI 51
           PDE+LE IL  ++ + LL  R+V +KW+SLI
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLI 32

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 21 PDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56
          PDE+L  I  +++ R LL    VC++W+ L     L
Sbjct: 5  PDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
PF04300	184	FBA: F-box associated region; InterPro: IPR007397	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.19
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.86
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.73
KOG2997|consensus	366		97.78
KOG0281|consensus	499		97.64
KOG2120|consensus	419		97.37
KOG0274|consensus	537		96.61
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	96.32
KOG4341|consensus	483		95.44
KOG3926|consensus	332		95.15
PLN03089	373	hypothetical protein; Provisional	90.46
PF13013	109	F-box-like_2: F-box-like domain	85.97
PF06881	109	Elongin_A: RNA polymerase II transcription factor	83.97

>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA

Probab=100.00  E-value=1.6e-71  Score=493.88  Aligned_cols=180  Identities=43%  Similarity=0.928  Sum_probs=140.4

Q ss_pred             hhhhhhhcCCCCcccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCC
Q psy15070         79 WTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSST  158 (308)
Q Consensus        79 Wk~~Y~~~~~k~p~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~  158 (308)
                      |+.||++ ++   ++||||+||+|+++|.+|++. ||||+|++|.+|.+++   .++|+..+                  
T Consensus         1 W~~fy~~-~p---~~RNLlkNp~ge~~~~~W~v~-ngGd~w~vE~~p~~~~---~~~p~~~v------------------   54 (184)
T PF04300_consen    1 WKVFYFL-RP---FGRNLLKNPSGEEGFQGWEVE-NGGDGWRVEEPPGDCG---GPFPDPEV------------------   54 (184)
T ss_dssp             HHHHHHH-HH---H-S--SSSSSSTTTTTT-EEE-E-TT--EEEESSBTTB------TTTT-------------------
T ss_pred             Ccchhee-cc---ccCccCcCCCccccCccceec-CCCCCEEEeeCCcccC---CCCCCchh------------------
Confidence            8999998 55   999999999999999999965 9999999999987663   35676566                  


Q ss_pred             CcceeeeeccceeeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-cccccc--
Q psy15070        159 NTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDI--  235 (308)
Q Consensus       159 g~~~cf~tSy~wc~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~--  235 (308)
                        ++||||||+||+|+|.|||+|||||++|||.+||+|+|||||++|+||+|+|+|+|+|||++++||++| +.+..+  
T Consensus        55 --~~cFvtSy~wc~K~Q~IDL~~eG~~~~lLD~~qP~I~isdWy~~r~dc~~~Y~l~V~Lld~~~~vi~~f~~~~~~~~~  132 (184)
T PF04300_consen   55 --QKCFVTSYRWCSKSQVIDLQAEGYWPELLDSFQPEITISDWYAGRFDCGCVYELHVQLLDANKNVIAEFKPGPVPIPQ  132 (184)
T ss_dssp             ---EEEEE-SS-EEEEEEEETTTTT--HHHHHHT--EEEEEEEEE--SSS-EEEEEEEEEEETTTEEEEEEEEESEEE-T
T ss_pred             --ccccccccccEEEEEEEehhhccCCHHHhcCCCCCEEEEEEEeccCCcCcEEEEEEEECcCCCcEEEEEecccccccc
Confidence              999999999999999999999999999999999999999999999999999999999999999999999 666665  


Q ss_pred             CCCCceeEEEEEEecCCCCeEEEEEEEeeeeccccCccCCCeeeceEEEEE
Q psy15070        236 GENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLI  286 (308)
Q Consensus       236 ~~~~~W~qvsh~F~~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v~  286 (308)
                      |+++.|+||||||++||||||||+|+|+|||++||+||||+|||||||+|+
T Consensus       133 ~~~~~W~qvsh~F~~Yg~GVR~I~f~h~GkD~~fw~G~yG~rvt~ssV~V~  183 (184)
T PF04300_consen  133 WTDNPWKQVSHTFSNYGPGVRFIRFEHGGKDTQFWAGHYGSRVTNSSVIVR  183 (184)
T ss_dssp             --T--EEEEEEEE-S--TTEEEEEEEEEEEESS--SSS-SEEEEEEEEEEE
T ss_pred             cCCCCcEEEEEEEeCCCCCCEEEEEEEeeeccccCCcccCCeEeceEEEEe
Confidence            899999999999999999999999999999999999999999999999996

This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.19  E-value=1.5e-11  Score=85.61  Aligned_cols=45  Identities=27%  Similarity=0.549  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHh
Q psy15070         17 GVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAI   61 (308)
Q Consensus        17 ~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~   61 (308)
                      +..||+||+.+||++||++||++|++|||+|+.++.++.+ ++.|.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence            4689999999999999999999999999999999987766 77664

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.86  E-value=9.7e-10  Score=76.16  Aligned_cols=45  Identities=33%  Similarity=0.533  Sum_probs=37.9

Q ss_pred             cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHH
Q psy15070         16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERA   60 (308)
Q Consensus        16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c   60 (308)
                      ++.+||+|++.+||++|++.++++|++|||+|+++++++.+ ..++
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            35679999999999999999999999999999999999887 6655

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.73  E-value=5.9e-09  Score=69.22  Aligned_cols=37  Identities=41%  Similarity=0.810  Sum_probs=35.6

Q ss_pred             CCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070         20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL   56 (308)
Q Consensus        20 LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~   56 (308)
                      ||+|++.+||++|+++++++|++|||+|+.+++++.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~   37 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDF   37 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhh
Confidence            7999999999999999999999999999999998876

>KOG2997|consensus

Probab=97.78  E-value=9.7e-06  Score=77.72  Aligned_cols=75  Identities=23%  Similarity=0.388  Sum_probs=58.3

Q ss_pred             cCCCCCHHHHHHHhccC-----ChhhhhhhhccchhhHHHhhhhHH-HHHHhhcCccc-CCC-----CcCCCCcchhhhh
Q psy15070         16 NGVYFPDEVLEVILVHM-----EIRTLLASRRVCKKWKSLIETQVL-KERAILEGFTR-GLT-----NEDKMNVEWTTWY   83 (308)
Q Consensus        16 ~~~~LP~ell~~Ils~L-----p~~~L~~crlVCk~W~~li~~~~~-~~~c~r~g~~~-~l~-----~~~~~~~dWk~~Y   83 (308)
                      .+..||+|||.+||..+     +.++|.+|++|||.|+..+.+|.+ |..|.+. |+. +.-     .....-.+|+.++
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~Kv-W~~s~~~ln~~~~~sky~~SWR~Mf  184 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKV-WQRSCIKLNPKILQSKYYTSWREMF  184 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHH-HHHhhhccchhhhhhHHHhHHHHHH
Confidence            46889999999999754     559999999999999999999999 9999987 642 110     0123356899999


Q ss_pred             hhcCCCCcc
Q psy15070         84 LMLSPNSLF   92 (308)
Q Consensus        84 ~~~~~k~p~   92 (308)
                      .. ++|..|
T Consensus       185 l~-RpRvrF  192 (366)
T KOG2997|consen  185 LE-RPRVRF  192 (366)
T ss_pred             hh-Ccceee
Confidence            98 665444

>KOG0281|consensus

Probab=97.64  E-value=2.9e-05  Score=75.26  Aligned_cols=49  Identities=29%  Similarity=0.390  Sum_probs=44.6

Q ss_pred             CCCCC----HHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhcCc
Q psy15070         17 GVYFP----DEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILEGF   65 (308)
Q Consensus        17 ~~~LP----~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~g~   65 (308)
                      +..||    ++|.+.||++|++.+|+.|.+|||+|+.+++++.+ ++..++.+|
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr  128 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVR  128 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcc
Confidence            45689    99999999999999999999999999999999987 888888765

>KOG2120|consensus

Probab=97.37  E-value=9.8e-05  Score=71.00  Aligned_cols=41  Identities=29%  Similarity=0.412  Sum_probs=38.1

Q ss_pred             cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070         16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL   56 (308)
Q Consensus        16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~   56 (308)
                      ....|||||++.||+.|+.++|++.+.|||||+.+..+..+
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            36789999999999999999999999999999999998775

>KOG0274|consensus

Probab=96.61  E-value=0.0014  Score=67.50  Aligned_cols=77  Identities=22%  Similarity=0.296  Sum_probs=57.6

Q ss_pred             CCCCccccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc-CcccCCCC---cC---CCCcchh
Q psy15070          9 PFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE-GFTRGLTN---ED---KMNVEWT   80 (308)
Q Consensus         9 ~~~~~~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~-g~~~~l~~---~~---~~~~dWk   80 (308)
                      +.....--+..||.|+...||.+||+++|++|++||+.|+.++++... .+.|... ++.++...   +.   .....|+
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  179 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK  179 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence            556666678899999999999999999999999999999999998765 6666553 33332111   11   1125788


Q ss_pred             hhhhh
Q psy15070         81 TWYLM   85 (308)
Q Consensus        81 ~~Y~~   85 (308)
                      .+|.+
T Consensus       180 s~~~~  184 (537)
T KOG0274|consen  180 SFYRR  184 (537)
T ss_pred             hhhhh
Confidence            89876

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=96.32  E-value=0.0024  Score=63.05  Aligned_cols=39  Identities=23%  Similarity=0.469  Sum_probs=34.5

Q ss_pred             ccCCCCCHHHHHHHhccCChh-hhhhhhccchhhHHHhhh
Q psy15070         15 LNGVYFPDEVLEVILVHMEIR-TLLASRRVCKKWKSLIET   53 (308)
Q Consensus        15 ~~~~~LP~ell~~Ils~Lp~~-~L~~crlVCk~W~~li~~   53 (308)
                      .+-++||+|||..|..+||.. |+++.|.||+.||+.+..
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            445789999999999999665 999999999999998864

>KOG4341|consensus

Probab=95.44  E-value=0.0078  Score=60.18  Aligned_cols=39  Identities=18%  Similarity=0.427  Sum_probs=35.5

Q ss_pred             CCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhH
Q psy15070         17 GVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQV   55 (308)
Q Consensus        17 ~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~   55 (308)
                      -..||+|++.+||++||-++|++|+.||+.|+-++.|-.
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~  110 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS  110 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence            346999999999999999999999999999999987643

>KOG3926|consensus

Probab=95.15  E-value=0.022  Score=53.99  Aligned_cols=82  Identities=20%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             CCCCCCCccccCCCCCHHHHHHHhccCChh-hhhhhhccchhhHHHhhhhHH-HHHHhhcCccc---C--CCCcCCCCcc
Q psy15070          6 EIDPFNGSKLNGVYFPDEVLEVILVHMEIR-TLLASRRVCKKWKSLIETQVL-KERAILEGFTR---G--LTNEDKMNVE   78 (308)
Q Consensus         6 ~~~~~~~~~~~~~~LP~ell~~Ils~Lp~~-~L~~crlVCk~W~~li~~~~~-~~~c~r~g~~~---~--l~~~~~~~~d   78 (308)
                      ||++..-..+.+.+||.|++..|+.+|+.. ||+....|=-.-..|+++..+ ++.|+.+ |.-   .  +-....+..+
T Consensus       191 qi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfH-F~erQi~~~l~l~k~~q~d  269 (332)
T KOG3926|consen  191 QITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFH-FNERQIHTILILSKKGQKD  269 (332)
T ss_pred             cccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhhhccccchh
Confidence            455444467789999999999999999765 888888888888888887766 8888765 311   1  1124456789


Q ss_pred             hhhhhhhcCC
Q psy15070         79 WTTWYLMLSP   88 (308)
Q Consensus        79 Wk~~Y~~~~~   88 (308)
                      ||.+|+.|.+
T Consensus       270 Wkqmyf~L~r  279 (332)
T KOG3926|consen  270 WKQMYFQLRR  279 (332)
T ss_pred             HHHHHHHHHH
Confidence            9999998433

>PLN03089 hypothetical protein; Provisional

Probab=90.46  E-value=15  Score=36.60  Aligned_cols=155  Identities=16%  Similarity=0.186  Sum_probs=83.8

Q ss_pred             CcccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCcee-eeecccccCC-----CCCccee
Q psy15070         90 SLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTK-ITKDSKKATS-----STNTESC  163 (308)
Q Consensus        90 ~p~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~-~~~~~~~~~~-----~~g~~~c  163 (308)
                      .|-.-|||+|...|++-.   +..|+..|+.+  ||--. +...++      .||++ +..-..+--|     |+|..--
T Consensus       190 ~p~~~Nll~NG~FE~Gp~---~~~n~~~gvll--p~~~~-~~~s~L------pgW~i~s~~~V~yids~h~~vp~G~~av  257 (373)
T PLN03089        190 RPTKDNLLKNGGFEEGPY---VFPNSSWGVLL--PPNIE-DDTSPL------PGWMIESLKAVKYIDSAHFSVPEGKRAV  257 (373)
T ss_pred             CccccceeecCCcccCCc---ccCCCCceEEe--CCccc-cCCCCC------CCcEEecCccEEEEecCcccCCCCceEE
Confidence            446889999998887642   22344444433  32111 111233      47997 3322222222     7777666


Q ss_pred             eeeccceeeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcc-----eeeee----ccccc
Q psy15070        164 FVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKK-----LLAYH----IHHTD  234 (308)
Q Consensus       164 f~tSy~wc~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~-----vi~~f----~~~~~  234 (308)
                      =+.+...+...|.|.+..                           |..|.|...|-|+.+.     .+.-|    ...+.
T Consensus       258 eL~~g~e~aI~Q~v~T~~---------------------------G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~  310 (373)
T PLN03089        258 ELVSGKESAIAQVVRTVP---------------------------GKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVP  310 (373)
T ss_pred             EeccCCcceEEEEEEccC---------------------------CCEEEEEEEEccCCCCCCCcEEEEEEeecccceEE
Confidence            556666677777777765                           4445555544443322     12212    11111


Q ss_pred             c--CCCCceeEEEEEEecCCCCeEEEEEEE---eeeeccccCccCCCeeeceEEEE
Q psy15070        235 I--GENFKWQKVENKFENYPSGVRYILFIH---EGVDSQFWQGHYGPKMTRATVFL  285 (308)
Q Consensus       235 ~--~~~~~W~qvsh~F~~Y~~GVR~V~f~h---~Gkd~~fw~G~yG~kvt~ssV~v  285 (308)
                      +  .....|++.+..|..=..-. .|.|.-   ..|.+. -...||+-+-+.+|.-
T Consensus       311 ~~s~g~gg~~~~s~~F~A~s~~T-rl~F~s~~y~~~~d~-~~~~cGPvlDdV~v~~  364 (373)
T PLN03089        311 YESQGKGGFKRASLRFKAVSNRT-RITFYSSFYHTKSDD-FGSLCGPVVDDVRVVP  364 (373)
T ss_pred             EecCCCcceEEEEEEEEeccCCE-EEEEEEeecccccCc-CCCcccceeeeEEEEE
Confidence            1  12347999999999866555 455532   333322 2356899999888764

>PF13013 F-box-like_2: F-box-like domain

Probab=85.97  E-value=0.67  Score=38.29  Aligned_cols=39  Identities=31%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CCCCCCccccCCCCCHHHHHHHhccCChhhhhhhhccch
Q psy15070          7 IDPFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCK   45 (308)
Q Consensus         7 ~~~~~~~~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk   45 (308)
                      ..|.+-..+.+.+||+||+..||.+-...++......|+
T Consensus        12 ~kp~~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   12 PKPPNRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             CCCCCccccchhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            345555666789999999999999999999999777775

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=83.97  E-value=2.3  Score=34.63  Aligned_cols=68  Identities=15%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHHHHHHhhcCcccCCC-CcCCCCcchhhhhhh
Q psy15070         16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLT-NEDKMNVEWTTWYLM   85 (308)
Q Consensus        16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~~~~c~r~g~~~~l~-~~~~~~~dWk~~Y~~   85 (308)
                      ++..+|-+++.-||.++.+..|.+--.-|-.-.. .++..|+++|.++ |..... .....+.+|+.+|..
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~-~tdeLW~~~i~rd-Fp~~~~~~~~~~~~~Wr~~Y~~   71 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIE-DTDELWKKLIKRD-FPEESKRQKPKEPESWRELYEK   71 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcch-hhHHHHHHHHHhH-CcChhhcccccccchHHHHHHH
Confidence            4678999999999999999999997666633221 2344559999887 421100 123345699999987

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
2e31_A	297	Structural Basis For Selection Of Glycosylated Subs		6e-29
2e33_A	197	Structural Basis For Selection Of Glycosylated Subs		7e-26
1umh_A	184	Structural Basis Of Sugar-Recognizing Ubiquitin Lig		1e-25
2rj2_A	185	Crystal Structure Of The Sugar Recognizing Scf Ubiq		1e-25
1umi_A	184	Structural Basis Of Sugar-Recognizing Ubiquitin Lig		1e-24

>pdb|2E31|A Chain A, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 297

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 34/265 (12%)
Query: 28  ILVHMEIRTLL-ASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVE---WTTWY 83
           +L  +    L+ A R VC +WK L++   L    +L+    GL  E   + E   W  +Y
Sbjct: 62  VLAELPATELVQACRLVCLRWKELVDGAPL---WLLKCQQEGLVPEGSADEERDHWQQFY 118
Query: 84  LMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSY 143
            +    S   RNL++NPCG++    W  + +GG+GWKVE            LP D    +
Sbjct: 119 FL----SKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEE-----------LPGDNGVEF 163
Query: 144 WTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFC 203
                      T   + +  F +S+  C K Q IDL       ++++   PAIV  +W+ 
Sbjct: 164 -----------TQDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYS 212
Query: 204 RRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYILFIH 262
            R D G  Y+L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++ F H
Sbjct: 213 GRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEH 272
Query: 263 EGVDSQFWQGHYGPKMTRATVFLIP 287
            G DS +W+G +G ++T ++V++ P
Sbjct: 273 GGQDSVYWKGWFGARVTNSSVWVEP 297

>pdb|2E33|A Chain A, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 197

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 27/220 (12%)
Query: 69  LTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGL 128
           + + D+    W  +Y +    S   RNL++NPCG++    W  + +GG+GWKVE  P   
Sbjct: 4   MGSADEERDHWQQFYFL----SKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELP--G 57
Query: 129 SQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDV 188
               +   DD++  Y                    F +S+  C K Q IDL       ++
Sbjct: 58  DNGVEFTQDDSVKKY--------------------FASSFEWCRKAQVIDLQAEGYWEEL 97
Query: 189 IERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENK 247
           ++   PAIV  +W+  R D G  Y+L V LL+E + +LA +      + E+  W ++ + 
Sbjct: 98  LDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHT 157
Query: 248 FENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP 287
           F +Y  GVR++ F H G DS +W+G +G ++T ++V++ P
Sbjct: 158 FIDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP 197

>pdb|1UMH|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase Length = 184

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 94  RNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKK 153
           RNL++NPCG++    W  + +GG+GWKVE  P       +   DD++  Y          
Sbjct: 12  RNLLRNPCGEEDLEGWSDVEHGGDGWKVEELP--GDNGVEFTQDDSVKKY---------- 59
Query: 154 ATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYD 213
                     F +S+  C K Q IDL       ++++   PAIV  +W+  R D G  Y+
Sbjct: 60  ----------FASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYE 109
Query: 214 LRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQG 272
           L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++ F H G DS +W+G
Sbjct: 110 LTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKG 169
Query: 273 HYGPKMTRATVFLIP 287
            +G ++T ++V++ P
Sbjct: 170 WFGARVTNSSVWVEP 184

>pdb|2RJ2|A Chain A, Crystal Structure Of The Sugar Recognizing Scf Ubiquitin Ligase At 1.7 Resolution Length = 185

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 94  RNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKK 153
           RNL++NPCG++    W  + +GG+GWKVE  P       +   DD++  Y          
Sbjct: 13  RNLLRNPCGEEDLEGWSDVEHGGDGWKVEELP--GDGNVEFTQDDSVKKY---------- 60
Query: 154 ATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYD 213
                     F +S+  C K Q IDL       ++++   PAIV  +W+  R D G  Y+
Sbjct: 61  ----------FASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYE 110
Query: 214 LRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQG 272
           L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++ F H G DS +W+G
Sbjct: 111 LTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKG 170
Query: 273 HYGPKMTRATVFLIP 287
            +G ++T ++V++ P
Sbjct: 171 WFGARVTNSSVWVEP 185

>pdb|1UMI|A Chain A, Structural Basis Of Sugar-Recognizing Ubiquitin Ligase Length = 184

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 94  RNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKK 153
           RNL++NP G++    W  + +GG+GWKVE  P       +   DD++  Y          
Sbjct: 12  RNLLRNPAGEEDLEGWSDVEHGGDGWKVEELP--GDNGVEFTQDDSVKKY---------- 59
Query: 154 ATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYD 213
                     F +S+  C K Q IDL       ++++   PAIV  +W+  R D G  Y+
Sbjct: 60  ----------FASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYE 109
Query: 214 LRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQG 272
           L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++ F H G DS +W+G
Sbjct: 110 LTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKG 169
Query: 273 HYGPKMTRATVFLIP 287
            +G ++T ++V++ P
Sbjct: 170 WFGARVTNSSVWVEP 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-58
2rj2_A	185	F-box only protein 2; ubiquitin, SCF, ubiquitin li	1e-56
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score =  188 bits (478), Expect = 2e-58
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 28/269 (10%)

Query: 21  PDEVLEVILVHMEIRTLL-ASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEW 79
           P+ +L  +L  +    L+ A R VC +WK L++   L      +       + D+    W
Sbjct: 55  PEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHW 114

Query: 80  TTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDT 139
             +Y      S   RNL++NPCG++    W  + +GG+GWKVE  P     E     DD+
Sbjct: 115 QQFY----FLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVE--FTQDDS 168

Query: 140 IPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYS 199
           +                       F +S+  C K Q IDL       ++++   PAIV  
Sbjct: 169 VKK--------------------YFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVK 208

Query: 200 EWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYI 258
           +W+  R D G  Y+L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++
Sbjct: 209 DWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFV 268

Query: 259 LFIHEGVDSQFWQGHYGPKMTRATVFLIP 287
            F H G DS +W+G +G ++T ++V++ P
Sbjct: 269 RFEHGGQDSVYWKGWFGARVTNSSVWVEP 297

>2rj2_A F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, lectin, UBL conjugation pathway; 1.70A {Mus musculus} PDB: 1umh_A 2e33_A* 1umi_A* Length = 185

 Score =  180 bits (457), Expect = 1e-56
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 27/210 (12%)

Query: 79  WTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDD 138
              +Y +        RNL++NPCG++    W  + +GG+GWKVE  P   + E     DD
Sbjct: 2   SHMFYFLSK----RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDGNVE--FTQDD 55

Query: 139 TIPSYWTKITKDSKKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVY 198
           ++                       F +S+  C K Q IDL       ++++   PAIV 
Sbjct: 56  SVKK--------------------YFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVV 95

Query: 199 SEWFCRRFDCGGRYDLRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRY 257
            +W+  R D G  Y+L V LL+E + +LA +      + E+  W ++ + F +Y  GVR+
Sbjct: 96  KDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRF 155

Query: 258 ILFIHEGVDSQFWQGHYGPKMTRATVFLIP 287
           + F H G DS +W+G +G ++T ++V++ P
Sbjct: 156 VRFEHGGQDSVYWKGWFGARVTNSSVWVEP 185

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 11 NGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56
          N   ++    PDE+L  I   + +  LL    VCK+W  L   + L
Sbjct: 3  NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 51/328 (15%), Positives = 93/328 (28%), Gaps = 99/328 (30%)

Query: 1   NNSLGEIDPFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL---K 57
              L +IDP   S+ +        +  I    E+R LL S+        L+   VL   +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYEN---CLL---VLLNVQ 254

Query: 58  ERAILEGFTRG----LTNEDKMNVEWTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILN 113
                  F       LT   K   +       LS  +  + +L  +           +L 
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTD------FLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 114 NGGNGWKVETPPFGLSQEAQ---PLPDDTIP----------SYWTKITKDSKKAT--SST 158
                + ++  P  L +E     P     I             W  +  D       SS 
Sbjct: 309 K----Y-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 159 N--TESCFVTSYGRCS-------------KQQWIDLGKRKTMLDVIERLNPAIVYSEWFC 203
           N    + +   + R S                W D+ K   M+ V +    ++V  +   
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 204 RRFDCGGRY-DLRVALLNEA---KKL---------------------------LAYHIHH 232
                   Y +L+V L NE    + +                           + +H+ +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 233 TDIGE----------NFKWQKVENKFEN 250
            +  E          +F++  +E K  +
Sbjct: 484 IEHPERMTLFRMVFLDFRF--LEQKIRH 509

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	100.0
2rj2_A	185	F-box only protein 2; ubiquitin, SCF, ubiquitin li	100.0
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.15
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.43
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.42
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.31
2zex_A	147	S-layer associated multidomain endoglucanase; fami	84.41

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=100.00  E-value=1.8e-81  Score=592.54  Aligned_cols=246  Identities=32%  Similarity=0.658  Sum_probs=223.6

Q ss_pred             cccCCCCCHHHHHHHhccCChhhhh-hhhccchhhHHHhhhhHH-HHHHhhcCcccCCCCcCCCCcchhhhhhhcCCCCc
Q psy15070         14 KLNGVYFPDEVLEVILVHMEIRTLL-ASRRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSL   91 (308)
Q Consensus        14 ~~~~~~LP~ell~~Ils~Lp~~~L~-~crlVCk~W~~li~~~~~-~~~c~r~g~~~~l~~~~~~~~dWk~~Y~~~~~k~p   91 (308)
                      +..+..||+|||++||++||+++|+ +|++|||+|++|++++.| +++|++.|+.++.. ..++..+||.+|+. ++   
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~-~~~~~~~Wk~~y~~-~~---  122 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS-ADEERDHWQQFYFL-SK---  122 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC------CCSCHHHHHHH-HH---
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc-cCCCCCChhhhheh-ee---
Confidence            4578999999999999999999999 999999999999999999 99999998754422 22367889999998 55   


Q ss_pred             ccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCC-CCCCCCCCCceeeeecccccCCCCCcceeeeeccce
Q psy15070         92 FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQP-LPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGR  170 (308)
Q Consensus        92 ~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~~cf~tSy~w  170 (308)
                      ++||||+||+++++|.+|+++.||||+|++|++|++++   .+ +|+..+                    ++||||||+|
T Consensus       123 ~gRNLL~NP~~e~~l~~W~~v~nGGd~w~ve~~p~~~~---~~~~p~~~~--------------------~~cF~tSy~w  179 (297)
T 2e31_A          123 RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNG---VEFTQDDSV--------------------KKYFASSFEW  179 (297)
T ss_dssp             HCCCCSSCSSSSSSSTTCEEEECCTTCCEEEESSCTTC---CCCCSCTTC--------------------CEEEECCSSC
T ss_pred             cccceeecCccccccccceeccCCCcceEeecCCcccc---cccCCCccc--------------------cceEeccCcc
Confidence            99999999999999999999999999999999886553   34 676566                    9999999999


Q ss_pred             eeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-ccccccCCCCceeEEEEEEe
Q psy15070        171 CSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDIGENFKWQKVENKFE  249 (308)
Q Consensus       171 c~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~~~~~~W~qvsh~F~  249 (308)
                      |.|+|+|||++||||++|||++||+|+|||||++|+||+|+|+|+|+|||+++++|++| +.++.+..++.|+||+|||+
T Consensus       180 c~k~Q~IDL~~EG~~~elLD~~qP~I~Vsdwy~~r~dc~~~Y~l~V~Lld~~~~vi~~f~~~~~~~~~~~~W~qvsH~F~  259 (297)
T 2e31_A          180 CRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFI  259 (297)
T ss_dssp             EEEEEEEETTTTTCCHHHHHHTCCCEEEEEEEECCTTSCEEEEEEEEEECTTCCEEEEEECCCEECCTTCCCEEEEEEEC
T ss_pred             eEEEEEEEchhccCCHHHHcCcCCCcEEeeeEccCCCCCeEEEEEEEEeCCCCCEEEEEecCceecCCCCceEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999 66655522899999999999


Q ss_pred             cCCCCeEEEEEEEeeeeccccCccCCCeeeceEEEEEc
Q psy15070        250 NYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP  287 (308)
Q Consensus       250 ~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v~~  287 (308)
                      +||||||||+|+|+|||+|||+||||+|||||||+|+|
T Consensus       260 ~Y~~GVR~I~f~h~GkD~~fw~G~yG~rvt~ssV~v~~  297 (297)
T 2e31_A          260 DYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP  297 (297)
T ss_dssp             SCCSCCCEEEEEEEEEESSCCSSSCSCEEEEEEEEECC
T ss_pred             CCCCCcEEEEEEEEeeccccCCcccCCceECcEEEEeC
Confidence            99999999999999999999999999999999999975

>2rj2_A F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, lectin, UBL conjugation pathway; 1.70A {Mus musculus} PDB: 1umh_A 2e33_A* 1umi_A*

Probab=100.00  E-value=3e-71  Score=490.61  Aligned_cols=180  Identities=34%  Similarity=0.745  Sum_probs=168.0

Q ss_pred             hhhhhhcCCCCcccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCCC
Q psy15070         80 TTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTN  159 (308)
Q Consensus        80 k~~Y~~~~~k~p~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g  159 (308)
                      +.||++ +|   ++||||+|||++++|.+|++++||||||+||.+|..++  ..++|+..+                   
T Consensus         3 ~~fy~~-~p---~~RNLl~Np~~e~~~~~W~~~~ngGdgW~vE~~p~d~~--~~~~p~~~~-------------------   57 (185)
T 2rj2_A            3 HMFYFL-SK---RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDGN--VEFTQDDSV-------------------   57 (185)
T ss_dssp             SHHHHH-HH---HCCCCCSCSSSTTTTTTCEEEEECTTCCEEEETTSCSS--CCCCSCTTC-------------------
T ss_pred             eEEEEe-Cc---cccccccCCCchhcccccccccCCCCcEEEeeCCCccc--cccCCCCcc-------------------
Confidence            578998 65   99999999999999999999999999999999986664  336787666                   


Q ss_pred             cceeeeeccceeeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-cccccc--C
Q psy15070        160 TESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDI--G  236 (308)
Q Consensus       160 ~~~cf~tSy~wc~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~--~  236 (308)
                       ++||||||+||.|+|.|||+|||||++|||++||+|+|||||++|+||+|+|+|+|+|||+++++|++| +.++++  |
T Consensus        58 -~~cFvtSy~wc~k~Q~IDL~~EG~~~elLD~~qP~I~vsdWy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f~~~~~~~~q~  136 (185)
T 2rj2_A           58 -KKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPED  136 (185)
T ss_dssp             -CEEEECCSSCEEEEEEEETTTTTCCHHHHHHTCCEEEEEEEEECCSSSCEEEEEEEEEEETTCCEEEEEECCSEECCTT
T ss_pred             -cceEccccccEEEEEEEEchhcCCCHHHHhccCCCcEEEeeEcccCCCCcEEEEEEEEcccCCCEEEEEeccccccccC
Confidence             999999999999999999999999999999999999999999999999999999999999999999999 666665  4


Q ss_pred             CCCceeEEEEEEecCCCCeEEEEEEEeeeeccccCccCCCeeeceEEEEEc
Q psy15070        237 ENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP  287 (308)
Q Consensus       237 ~~~~W~qvsh~F~~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v~~  287 (308)
                      +  .|+||+|||++||||||||+|+|+|||+|||+||||+|||||||+|+|
T Consensus       137 ~--~W~qvsH~F~~Y~~GVR~I~F~h~GkD~~fw~G~yG~rvT~sSV~V~~  185 (185)
T 2rj2_A          137 G--SWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP  185 (185)
T ss_dssp             C--CCEEEEEEECSCCTTEEEEEEEEEEEESSCCSSSCSCEEEEEEEEEEC
T ss_pred             C--ccEEEEEEecCCCCCcEEEEEEEEeEecccCCcccCCeeeCcEEEEeC
Confidence            4  999999999999999999999999999999999999999999999975

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.15  E-value=2.2e-11  Score=85.52  Aligned_cols=43  Identities=30%  Similarity=0.481  Sum_probs=38.8

Q ss_pred             cccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070         14 KLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL   56 (308)
Q Consensus        14 ~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~   56 (308)
                      ...+..||+||+.+||++||+++|++|++|||+|++++.++.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l   48 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence            4468899999999999999999999999999999999999887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.75  E-value=9.7e-09  Score=97.04  Aligned_cols=71  Identities=24%  Similarity=0.467  Sum_probs=58.1

Q ss_pred             ccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhcCcccCCC-------CcCCCCcchhhhhhh
Q psy15070         15 LNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILEGFTRGLT-------NEDKMNVEWTTWYLM   85 (308)
Q Consensus        15 ~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~g~~~~l~-------~~~~~~~dWk~~Y~~   85 (308)
                      -.+..||+|++.+||++|++++|++|++|||+|+.+++++.+ +++|.++++..+..       .......+|+..|..
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~   95 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIR   95 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHH
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhh
Confidence            357889999999999999999999999999999999999887 99999887643321       111234689999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.61  E-value=2.7e-08  Score=93.92  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=46.1

Q ss_pred             cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhh-hHH-HHHHhhcCcc
Q psy15070         16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIET-QVL-KERAILEGFT   66 (308)
Q Consensus        16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~-~~~-~~~c~r~g~~   66 (308)
                      .+..||+||+.+||++||+++|++|++|||+|+.++++ +.+ +++|.++++.
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~   66 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFV   66 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSC
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccc
Confidence            36679999999999999999999999999999999998 777 9999887763

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.43  E-value=1.2e-07  Score=89.42  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc
Q psy15070         17 GVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE   63 (308)
Q Consensus        17 ~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~   63 (308)
                      +..||+||+.+||++|+|+||++|.+|||+||.+++|+.+ |.+|.+.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence            5679999999999999999999999999999999999998 9999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.42  E-value=1e-07  Score=90.04  Aligned_cols=48  Identities=25%  Similarity=0.368  Sum_probs=43.8

Q ss_pred             cCCCCCHH----HHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc
Q psy15070         16 NGVYFPDE----VLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE   63 (308)
Q Consensus        16 ~~~~LP~e----ll~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~   63 (308)
                      .+..||+|    |+.+||++||+++|++|++|||+|+.+++++.+ +++|.+.
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            35669999    999999999999999999999999999999887 9888765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.04  E-value=2.1e-06  Score=78.46  Aligned_cols=43  Identities=30%  Similarity=0.481  Sum_probs=38.7

Q ss_pred             cccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070         14 KLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL   56 (308)
Q Consensus        14 ~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~   56 (308)
                      ...+..||+|++.+||++|+.+++++|++|||+|+.++.++.+
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            4568899999999999999999999999999999999977654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.58  E-value=2.7e-05  Score=76.35  Aligned_cols=35  Identities=29%  Similarity=0.576  Sum_probs=29.6

Q ss_pred             cCCCCCHHHHHHHhccCC-hhhhhhhhccchhhHHH
Q psy15070         16 NGVYFPDEVLEVILVHME-IRTLLASRRVCKKWKSL   50 (308)
Q Consensus        16 ~~~~LP~ell~~Ils~Lp-~~~L~~crlVCk~W~~l   50 (308)
                      .++.||+||+.+||++|| .+++++|++|||+|+.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            367899999999999999 99999999999999999

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.31  E-value=8.6e-05  Score=72.86  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHhccC-ChhhhhhhhccchhhHHHh
Q psy15070         17 GVYFPDEVLEVILVHM-EIRTLLASRRVCKKWKSLI   51 (308)
Q Consensus        17 ~~~LP~ell~~Ils~L-p~~~L~~crlVCk~W~~li   51 (308)
                      ...||+|++.+||++| +.+++.+|++|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            4579999999999999 8999999999999999984

>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A*

Probab=84.41  E-value=11  Score=30.32  Aligned_cols=112  Identities=17%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             ccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCCCcceeeeecccee
Q psy15070         92 FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRC  171 (308)
Q Consensus        92 ~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~cf~tSy~wc  171 (308)
                      ..+|||.|+..|+++..|...  ++.+-.+..+.         |-                      |...-.+++...-
T Consensus         3 ~~~Nli~N~~FE~g~~~W~~~--~~~~~~~~~~~---------~~----------------------G~~~l~~~~~~~~   49 (147)
T 2zex_A            3 HMVNMVSNPGFEDGLDSWQDW--QQDMSAVPEAA---------HN----------------------GALGLKIGGGKAA   49 (147)
T ss_dssp             CCEECCSSTTSTTTTTTCEET--TSCEEEEGGGC---------SS----------------------SSCEEEECSSSCE
T ss_pred             cccceecCCCcccCccCCcCc--CCceeEEeccc---------cC----------------------CceEEEEcCCCCc
Confidence            368999999999999999754  22222333210         00                      1111123443445


Q ss_pred             eeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCc-ceeeeecccccc-CCCCceeEEEEEEe
Q psy15070        172 SKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAK-KLLAYHIHHTDI-GENFKWQKVENKFE  249 (308)
Q Consensus       172 ~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~-~vi~~f~~~~~~-~~~~~W~qvsh~F~  249 (308)
                      ...|.|.|+.           .=.-++|-|+.-.-.....+.+.|+..+.+. ..+...    .+ .....|.+++..|.
T Consensus        50 ~~~Q~v~v~~-----------~~~Y~ls~wvk~~~~g~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~W~~~s~~ft  114 (147)
T 2zex_A           50 GGGQDIPLKP-----------NTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTYVQH----ILNFNETDWTYKQLLFT  114 (147)
T ss_dssp             EEEEECCCCT-----------TCEEEEEEEEEESSCCSSCEEEEEEEEBSSTTCCEEEE----EEEECCSSCEEEEEEEE
T ss_pred             cEeEEEEECC-----------CCEEEEEEEEEeccCCCceEEEEEEEeeCCCCCcEEEe----EeeeCCCCcEEEEEEEE
Confidence            7788888764           2345677777543333335566666543222 111111    11 24578999999998


Q ss_pred             cC
Q psy15070        250 NY  251 (308)
Q Consensus       250 ~Y  251 (308)
                      -+
T Consensus       115 t~  116 (147)
T 2zex_A          115 TP  116 (147)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d1umha_	184	b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus mu	2e-60
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.002
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.002
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.004

>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: F-box associated region, FBA
domain: F-box only protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  188 bits (480), Expect = 2e-60
 Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 23/197 (11%)

Query: 92  FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDS 151
             RNL++NPCG++    W  + +GG+GWKVE  P     E     DD++           
Sbjct: 10  RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVE--FTQDDSV----------- 56

Query: 152 KKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGR 211
                    +  F +S+  C K Q IDL       ++++   PAIV  +W+  R D G  
Sbjct: 57  ---------KKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSL 107

Query: 212 YDLRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFW 270
           Y+L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++ F H G DS +W
Sbjct: 108 YELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYW 167

Query: 271 QGHYGPKMTRATVFLIP 287
           +G +G ++T ++V++ P
Sbjct: 168 KGWFGARVTNSSVWVEP 184

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56
           PDE+L  I   + +  LL    VCK+W  L   + L
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLI-ETQVLKERAILEGFTRGLTNEDKMNVE 78
           P E+   I  +++   ++ S  V + W  +I ++  L ++ ++          + +N++
Sbjct: 9  LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLK 68

Query: 79 WTTWYLMLSPNSLFNRNLVKN 99
           +  Y  LS       + ++N
Sbjct: 69 LSQKYPKLSQQDRLRLSFLEN 89

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 19 YFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56
            P E+   +L  +E + LL + + C+ W+ L E  +L
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEW 79
            D + E IL +++ ++L A+  VCK+W  +    +L ++ I         +  +   E 
Sbjct: 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT--DSLWRGLAER 75

Query: 80 TTWYLMLSPNSLFNRN 95
            W   L  N   + N
Sbjct: 76 RGWGQYLFKNKPPDGN 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d1umha_	184	F-box only protein 2 {Mouse (Mus musculus) [TaxId:	100.0
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.4
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.09
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.96

>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: F-box associated region, FBA
domain: F-box only protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-71  Score=485.71  Aligned_cols=181  Identities=34%  Similarity=0.743  Sum_probs=169.4

Q ss_pred             hhhhhcCCCCcccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCCCc
Q psy15070         81 TWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNT  160 (308)
Q Consensus        81 ~~Y~~~~~k~p~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~  160 (308)
                      .||++ ++   ++||||+||+|+++|.+|++++||||||+||++|.+++  ..+.|+..+                    
T Consensus         3 ~fy~~-~~---~~RNLikNp~ge~~~~~W~i~~ngGdgW~vE~~p~~~~--~~~~~~~~v--------------------   56 (184)
T d1umha_           3 HFYFL-SK---RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNG--VEFTQDDSV--------------------   56 (184)
T ss_dssp             HHHHH-HH---TCCCCSSSSSSTTTTTTCEEEECCTTCCEEEESSCTTC--CCCTTTSSC--------------------
T ss_pred             eEEEe-Cc---cccccccCCCchHhccCCccccCCCCceeEeecCCccC--ccCCCCCcc--------------------
Confidence            68997 76   99999999999999999999999999999999986654  334456556                    


Q ss_pred             ceeeeeccceeeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-ccccccCCCC
Q psy15070        161 ESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDIGENF  239 (308)
Q Consensus       161 ~~cf~tSy~wc~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~~~~~  239 (308)
                      ++||||||+||.|.|+|||++||||++|||++||+|+|||||++|+||+|+|+|+|+|||+++++|++| +.++.++.+.
T Consensus        57 ~~cFvtSy~wc~k~Q~IDL~~eG~~~elLD~~qP~I~VsdWy~~r~~~g~~Y~l~V~Lld~~~~~i~~f~~~~~~~~~~~  136 (184)
T d1umha_          57 KKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDG  136 (184)
T ss_dssp             CEEEECCSSCEEEEEEEETTTTTCCHHHHHHTCCEEEEEEEEECCSSSCEEEEEEEEEECTTCCEEEEEECCSEECCTTC
T ss_pred             eEEEEEEeeeeEeEEEEehhhcccCHHHHhccCCCEEEEEeEcCCCCCCEEEEEEEEEcccCCcEEEEEcCCccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 7777667889


Q ss_pred             ceeEEEEEEecCCCCeEEEEEEEeeeeccccCccCCCeeeceEEEEEc
Q psy15070        240 KWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP  287 (308)
Q Consensus       240 ~W~qvsh~F~~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v~~  287 (308)
                      +|.||+|||++||||||||+|+|+|||+|||+||||+|||||||+|+|
T Consensus       137 ~W~qvsH~F~~Y~~GvR~I~F~h~GkDt~fW~G~yG~rvt~ssV~V~p  184 (184)
T d1umha_         137 SWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP  184 (184)
T ss_dssp             CCEEEEEEECSCCTTCCEEEEEEEEEESSCCSSSCSCEEEEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCCcEEEEEEEecccCccCCcccCCeeeCcEEEEcC
Confidence            999999999999999999999999999999999999999999999986

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=106.53  Aligned_cols=70  Identities=24%  Similarity=0.493  Sum_probs=58.5

Q ss_pred             cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhcCcccCCC-------CcCCCCcchhhhhhh
Q psy15070         16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILEGFTRGLT-------NEDKMNVEWTTWYLM   85 (308)
Q Consensus        16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~g~~~~l~-------~~~~~~~dWk~~Y~~   85 (308)
                      .++.||+||+.+||++||++||++|++|||+|+.++.++.+ +..|.+.++..+..       .......+||.+|.+
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~   95 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIR   95 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHH
Confidence            46789999999999999999999999999999999999987 99999886533221       123345789999986

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.4e-13  Score=87.47  Aligned_cols=39  Identities=33%  Similarity=0.550  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070         18 VYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL   56 (308)
Q Consensus        18 ~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~   56 (308)
                      +.||+||+.+||++||++||++|++|||+|++++.++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.5e-11  Score=95.35  Aligned_cols=50  Identities=24%  Similarity=0.382  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhh-hhHH-HHHHhhcCcc
Q psy15070         17 GVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIE-TQVL-KERAILEGFT   66 (308)
Q Consensus        17 ~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~-~~~~-~~~c~r~g~~   66 (308)
                      ++.||+||+++||++||++||++|++|||+|+.+++ ++.+ ++.|.++++.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~~~   57 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFV   57 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTTSS
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCC
Confidence            457999999999999999999999999999999985 5676 8888887653

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.9e-11  Score=94.87  Aligned_cols=43  Identities=28%  Similarity=0.433  Sum_probs=40.0

Q ss_pred             CHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc
Q psy15070         21 PDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE   63 (308)
Q Consensus        21 P~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~   63 (308)
                      ++||+.+||++||++||++|++|||+|+.+++++.+ +++|.+.
T Consensus        19 ~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~   62 (118)
T d1p22a1          19 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (118)
T ss_dssp             CHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhh
Confidence            369999999999999999999999999999999888 8888775