Psyllid ID: psy15097

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MLASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPSELPKMLDGLRKVNKSYPLLTLLQWNP
Secondary Structure (PSIPRED)
cccccccccccccccEEEccccccEEEEcccccEEEcHHHHHHHHHHccccccHHHHHHHHHcccEEcccccEEcccccccccccccccHHcccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHEHHcccccccccEEccccccEEEEccHccHHEcHHHHHHHHHHHcccccHHHHHHHHcccccEcccccEEEcccHHHccccccHHHHHcccccEEEEEEccc
Coil and Loop (DISEMBL)
mlasqfdlysgeedykylspilgnvcfastqYAMCFTLHSFAslyaqtsptlntQEFARRLWgdmyfnsktkivepvnpselpkmldglrkvnksyplltllqwnp
Flexible Loop (DISEMBL)
MLASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKtkivepvnpselPKMLdglrkvnksyplltllqwnp
Low Complexity Region (SEG)
MLASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPSELPKMLDGLRKVNKSYPLLTLLQWNP
Disordered region (IsUnstruct)
*******LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPV*******MLDGLRKVNKSYPLLTLLQW**
Disordered Region (DISOPRED)
MLASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKT**************LDGLRKVNKSYPLLTLLQW**
Disordered Region (DISEMBL)
MLASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPSELPKMLDGLRKVNKSYPLLTLLQWNP
Disordered Region (DISPRO)
MLASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPSELPKMLDGLRKVNKSYPLLTLLQWNP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPSELPKMLDGLRKVNKSYPLLTLLQWNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
O08810	971	116 kDa U5 small nuclear	yes	N/A	0.679	0.074	0.575	8e-19
Q5F3X4	972	116 kDa U5 small nuclear	yes	N/A	0.603	0.065	0.615	1e-18
Q15029	972	116 kDa U5 small nuclear	yes	N/A	0.603	0.065	0.615	1e-18
A4FUD3	972	116 kDa U5 small nuclear	yes	N/A	0.603	0.065	0.615	1e-18
Q5R6E0	972	116 kDa U5 small nuclear	yes	N/A	0.603	0.065	0.615	2e-18
O94316	984	Pre-mRNA-splicing factor	yes	N/A	0.566	0.060	0.540	2e-12
P36048	1008	Pre-mRNA-splicing factor	yes	N/A	0.556	0.058	0.412	2e-05
Q6FYA7	842	Elongation factor 2 OS=Ca	yes	N/A	0.490	0.061	0.415	7e-05
C4YJQ8	842	Elongation factor 2 OS=Ca	N/A	N/A	0.490	0.061	0.415	9e-05
Q5A0M4	842	Elongation factor 2 OS=Ca	N/A	N/A	0.490	0.061	0.415	9e-05

>sp|O08810|U5S1_MOUSE 116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct: 290 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 348

Query: 68  NSKTKIVEPVNPS 80
           N KT+      PS
Sbjct: 349 NPKTRKFTKKAPS 361

Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.
Mus musculus (taxid: 10090)

>sp|Q5F3X4|U5S1_CHICK 116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct: 291 MYSTDENL-VLSPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYF 349

Query: 68  NSKTK 72
           N KT+
Sbjct: 350 NPKTR 354

Component of the U5 snRNP complex required for pre-mRNA splicing.

Gallus gallus (taxid: 9031)

>sp|Q15029|U5S1_HUMAN 116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct: 291 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 349

Query: 68  NSKTK 72
           N KT+
Sbjct: 350 NPKTR 354

Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.

Homo sapiens (taxid: 9606)

>sp|A4FUD3|U5S1_BOVIN 116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct: 291 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 349

Query: 68  NSKTK 72
           N KT+
Sbjct: 350 NPKTR 354

Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.

Bos taurus (taxid: 9913)

>sp|Q5R6E0|U5S1_PONAB 116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct: 291 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 349

Query: 68  NSKTK 72
           N KT+
Sbjct: 350 NPKTR 354

Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.

Pongo abelii (taxid: 9601)

>sp|O94316|SN114_SCHPO Pre-mRNA-splicing factor cwf10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf10 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 13  EDYKY-LSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKT 71
           +D KY +SP LGNVCFAS     CFTL SFA LY      ++   F++RLWGD+YF+SKT
Sbjct: 306 KDLKYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDRHGGIDVDLFSKRLWGDIYFDSKT 365

Query: 72  K 72
           +
Sbjct: 366 R 366

Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36048|SN114_YEAST Pre-mRNA-splicing factor SNU114 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU114 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 19  SPILGNVCFASTQYAMCFTLHSFAS-LYAQTSPTLNTQEFARRLWGDMYF---NSKTKIV 74
           SPI  N+ FAST+    FT+  F S  YA + P+    +F  RLWG +Y+   N +TK  
Sbjct: 305 SPIDNNIIFASTKLGFTFTIKEFVSYYYAHSIPSSKIDDFTTRLWGSVYYHKGNFRTKPF 364

Query: 75  EPV 77
           E V
Sbjct: 365 ENV 367

Component of the U5 snRNP complex required for pre-mRNA splicing. Binds GTP.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FYA7|EF2_CANGA Elongation factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=EFT1 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 20  PILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
           P  G V F S  +   FT+  FA+ YA+    ++ Q+   RLWGD +FN KTK
Sbjct: 204 PSKGTVAFGSGLHGWAFTIRQFATRYAKKF-GVDKQKMMERLWGDSFFNPKTK 255

Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|C4YJQ8|EF2_CANAW Elongation factor 2 OS=Candida albicans (strain WO-1) GN=EFT2 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 20  PILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
           P  G V FAS  +   FT+  FA+ Y++    ++ ++   RLWGD YFN KTK
Sbjct: 204 PQKGTVAFASGLHGWAFTVRQFANKYSKKF-GVDKEKMMERLWGDSYFNPKTK 255

Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.

Candida albicans (strain WO-1) (taxid: 294748)

>sp|Q5A0M4|EF2_CANAL Elongation factor 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=EFT2 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 20  PILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
           P  G V FAS  +   FT+  FA+ Y++    ++ ++   RLWGD YFN KTK
Sbjct: 204 PQKGTVAFASGLHGWAFTVRQFANKYSKKF-GVDKEKMMERLWGDSYFNPKTK 255

Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
48097815	980	PREDICTED: 116 kDa U5 small nuclear ribo	0.584	0.063	0.661	4e-20
383857411	980	PREDICTED: 116 kDa U5 small nuclear ribo	0.584	0.063	0.646	6e-19
350426399	980	PREDICTED: 116 kDa U5 small nuclear ribo	0.584	0.063	0.615	8e-19
340723700	980	PREDICTED: 116 kDa U5 small nuclear ribo	0.584	0.063	0.615	8e-19
242021990	974	116 kDa U5 small nuclear ribonucleoprote	0.603	0.065	0.611	3e-18
321456921	1003	hypothetical protein DAPPUDRAFT_260737 [	0.613	0.064	0.636	7e-18
322794451	981	hypothetical protein SINV_10771 [Solenop	0.613	0.066	0.621	7e-18
71896325	974	elongation factor Tu GTP binding domain	0.622	0.067	0.611	2e-17
149054419	661	elongation factor Tu GTP binding domain	0.679	0.108	0.575	2e-17
148225911	974	elongation factor Tu GTP binding domain	0.622	0.067	0.611	3e-17

>gi|48097815|ref|XP_393894.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform 1 [Apis mellifera] gi|380012179|ref|XP_003690164.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Apis florea]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/65 (66%), Positives = 55/65 (84%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           LYS  E+  ++SP +GNVCFAS++Y +CFTL SFA+LYA+T PTLN  EFA+RLWGD+YF
Sbjct: 298 LYSDSENPSFVSPAIGNVCFASSEYNVCFTLKSFAALYARTHPTLNANEFAKRLWGDIYF 357

Query: 68  NSKTK 72
           NSKT+
Sbjct: 358 NSKTR 362

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857411|ref|XP_003704198.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Megachile rotundata]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           LYS  E+  ++SP +GNVCFAS++Y +CFTL SFA+LYA+T  TLN  EFA+RLWGD+YF
Sbjct: 298 LYSDSENPSFVSPAIGNVCFASSEYNVCFTLKSFAALYAKTHLTLNANEFAKRLWGDIYF 357

Query: 68  NSKTK 72
           NSKT+
Sbjct: 358 NSKTR 362

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426399|ref|XP_003494426.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Bombus impatiens]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 54/65 (83%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           LYS  E+  ++SP +GNVCFAS++Y +CFTL SFA+LYA+  P+LN  EF++RLWGD+YF
Sbjct: 298 LYSDSENPSFVSPAIGNVCFASSEYNVCFTLKSFAALYAKIHPSLNANEFSKRLWGDIYF 357

Query: 68  NSKTK 72
           NSKT+
Sbjct: 358 NSKTR 362

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723700|ref|XP_003400227.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Bombus terrestris]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 54/65 (83%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           LYS  E+  ++SP +GNVCFAS++Y +CFTL SFA+LYA+  P+LN  EF++RLWGD+YF
Sbjct: 298 LYSDSENPSFVSPAIGNVCFASSEYNVCFTLKSFAALYAKIHPSLNANEFSKRLWGDIYF 357

Query: 68  NSKTK 72
           NSKT+
Sbjct: 358 NSKTR 362

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021990|ref|XP_002431425.1| 116 kDa U5 small nuclear ribonucleoprotein component, putative [Pediculus humanus corporis] gi|212516706|gb|EEB18687.1| 116 kDa U5 small nuclear ribonucleoprotein component, putative [Pediculus humanus corporis]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 6   FDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDM 65
             LYS  E+   +SP+LGNVCF+S+QYA+CFTL SFA++Y QT   +N  EFA+RLWGD+
Sbjct: 290 LSLYSDNENPHVVSPLLGNVCFSSSQYAVCFTLKSFANIYNQTYGGININEFAKRLWGDI 349

Query: 66  YFNSKTK 72
           YFNSKT+
Sbjct: 350 YFNSKTR 356

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321456921|gb|EFX68018.1| hypothetical protein DAPPUDRAFT_260737 [Daphnia pulex]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQT-SPTLNTQEFARRLWGDMY 66
           LYS EE+ K++SP+LGNVCFAS Q+++CFTL SFA LY+ T    +N  E ARRLWGD+Y
Sbjct: 312 LYSDEENPKFVSPLLGNVCFASAQFSVCFTLKSFAKLYSDTYGSDINDNELARRLWGDIY 371

Query: 67  FNSKTK 72
           FNSKT+
Sbjct: 372 FNSKTR 377

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794451|gb|EFZ17523.1| hypothetical protein SINV_10771 [Solenopsis invicta]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 8   LYSGE-EDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMY 66
           LYS + E+  ++SP +GNVCFAS++Y++CFTL SFA+LYA+  P LN  EFA+RLWGD+Y
Sbjct: 298 LYSSDTENPGFVSPAIGNVCFASSEYSVCFTLKSFAALYARNYPGLNANEFAKRLWGDIY 357

Query: 67  FNSKTK 72
           FNSKT+
Sbjct: 358 FNSKTR 363

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|71896325|ref|NP_001025537.1| elongation factor Tu GTP binding domain containing 2 [Xenopus (Silurana) tropicalis] gi|60618366|gb|AAH90572.1| eftud2 protein [Xenopus (Silurana) tropicalis] gi|159155738|gb|AAI54880.1| eftud2 protein [Xenopus (Silurana) tropicalis]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 6   FDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDM 65
             +YS +E+   LSP+LGNVCFAS+QY++CFTL SFA +YA T   +N QEFA+RLWGD+
Sbjct: 291 LSMYSTDENL-ILSPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDI 349

Query: 66  YFNSKTK 72
           YFN KT+
Sbjct: 350 YFNPKTR 356

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149054419|gb|EDM06236.1| elongation factor Tu GTP binding domain containing 2, isoform CRA_a [Rattus norvegicus]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 8   LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
           +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct: 291 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 349

Query: 68  NSKTKIVEPVNPS 80
           N KT+      PS
Sbjct: 350 NPKTRKFTKKAPS 362

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148225911|ref|NP_001079536.1| elongation factor Tu GTP binding domain containing 2 [Xenopus laevis] gi|27882632|gb|AAH44041.1| MGC53479 protein [Xenopus laevis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 6   FDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDM 65
             +YS +E+   LSP+LGNVCFAS+QY++CFTL SFA +YA T   +N QEFA+RLWGD+
Sbjct: 291 LSVYSTDENL-VLSPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDI 349

Query: 66  YFNSKTK 72
           YFN KT+
Sbjct: 350 YFNPKTR 356

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0039566	975	CG4849 [Drosophila melanogaste	0.603	0.065	0.609	2.7e-27
ASPGD|ASPL0000047042	985	AN1408 [Emericella nidulans (t	0.584	0.062	0.483	1.1e-21
POMBASE|SPBC215.12	984	cwf10 "GTPase Cwf10 (predicted	0.566	0.060	0.540	4.7e-21
UNIPROTKB|G4N746	989	MGG_13500 "U5 small nuclear ri	0.584	0.062	0.5	8.1e-21
TAIR|locus:2038555	987	MEE5 "AT1G06220" [Arabidopsis	0.622	0.066	0.417	1.4e-17
MGI|MGI:1336880	971	Eftud2 "elongation factor Tu G	0.679	0.074	0.575	5.7e-17
UNIPROTKB|F1LM66	972	Eftud2 "Protein Eftud2" [Rattu	0.679	0.074	0.575	5.7e-17
TAIR|locus:2146950	973	AT5G25230 "AT5G25230" [Arabido	0.622	0.067	0.402	5.9e-17
UNIPROTKB|K7EJ81	962	EFTUD2 "116 kDa U5 small nucle	0.603	0.066	0.615	7.1e-17
UNIPROTKB|Q5F3X4	972	EFTUD2 "116 kDa U5 small nucle	0.603	0.065	0.615	7.2e-17

FB|FBgn0039566 CG4849 [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 39/64 (60%), Positives = 46/64 (71%)

Query:     9 YSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFN 68
             Y   +D   +SPILGNVCFAS+ Y  CFTL SFA LYA T   +   +FA+RLWGDMYFN
Sbjct:   294 YGAPDDNLLVSPILGNVCFASSLYGFCFTLKSFAKLYADTYEGVAYLDFAKRLWGDMYFN 353

Query:    69 SKTK 72
             SKT+
Sbjct:   354 SKTR 357

GO:0005829 "cytosol" evidence=ISS

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005682 "U5 snRNP" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

ASPGD|ASPL0000047042 AN1408 [Emericella nidulans (taxid:162425)]

 Score = 164 (62.8 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query:    11 GEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSK 70
             G  + + LSP  GNV FA      CFTL SFA +YA T P + T +FA RLWGD++FN +
Sbjct:   307 GHGEKRRLSPEKGNVAFACASMKWCFTLQSFAKMYADTYPNIETADFAIRLWGDIFFNPR 366

Query:    71 TK 72
             ++
Sbjct:   367 SR 368

GO:0008150 "biological_process" evidence=ND

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

POMBASE|SPBC215.12 cwf10 "GTPase Cwf10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 171 (65.3 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query:    13 EDYKY-LSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKT 71
             +D KY +SP LGNVCFAS     CFTL SFA LY      ++   F++RLWGD+YF+SKT
Sbjct:   306 KDLKYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDRHGGIDVDLFSKRLWGDIYFDSKT 365

Query:    72 K 72
             +
Sbjct:   366 R 366

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISO

UNIPROTKB|G4N746 MGG_13500 "U5 small nuclear ribonucleoprotein component" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 156 (60.0 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
 Identities = 31/62 (50%), Positives = 39/62 (62%)

Query:    11 GEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSK 70
             G+ +   LSP  GNV FA +    CFTL SF+  YA T   L+  EFARRLWGD+YFN +
Sbjct:   309 GKAEKWRLSPEKGNVLFACSDMGWCFTLQSFSKFYADTYAPLDHTEFARRLWGDIYFNPQ 368

Query:    71 TK 72
              +
Sbjct:   369 KR 370

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2038555 MEE5 "AT1G06220" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query:    14 DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQT-SPTLNTQEFARRLWGDMYFNSKTK 72
             D   + P  GNVCFAS      FTL SFA +YA+     ++  +FA RLWGD+Y++S T+
Sbjct:   309 DLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRLWGDVYYHSDTR 368

Query:    73 IVEPVNP 79
             + +   P
Sbjct:   369 VFKRSPP 375

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0045694 "regulation of embryo sac egg cell differentiation" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

MGI|MGI:1336880 Eftud2 "elongation factor Tu GTP binding domain containing 2" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 5.7e-17, P = 5.7e-17
 Identities = 42/73 (57%), Positives = 55/73 (75%)

Query:     8 LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
             +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct:   290 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 348

Query:    68 NSKTKIVEPVNPS 80
             N KT+      PS
Sbjct:   349 NPKTRKFTKKAPS 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|F1LM66 Eftud2 "Protein Eftud2" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 5.7e-17, P = 5.7e-17
 Identities = 42/73 (57%), Positives = 55/73 (75%)

Query:     8 LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
             +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct:   291 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 349

Query:    68 NSKTKIVEPVNPS 80
             N KT+      PS
Sbjct:   350 NPKTRKFTKKAPS 362

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

TAIR|locus:2146950 AT5G25230 "AT5G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query:    14 DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQT-SPTLNTQEFARRLWGDMYFNSKTK 72
             D   + P  GNVCFAS      FTL SFA +YA+     ++  +FA RLWGD+Y++  T+
Sbjct:   295 DLPLIDPAAGNVCFASGTAGWSFTLQSFARMYAKLHGVAMDVDKFASRLWGDVYYHPDTR 354

Query:    73 IVEPVNP 79
             +     P
Sbjct:   355 VFNTSPP 361

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|K7EJ81 EFTUD2 "116 kDa U5 small nuclear ribonucleoprotein component" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 40/65 (61%), Positives = 53/65 (81%)

Query:     8 LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
             +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct:   281 MYSTDENL-ILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYF 339

Query:    68 NSKTK 72
             N KT+
Sbjct:   340 NPKTR 344

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q5F3X4 EFTUD2 "116 kDa U5 small nuclear ribonucleoprotein component" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 7.2e-17, P = 7.2e-17
 Identities = 40/65 (61%), Positives = 53/65 (81%)

Query:     8 LYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYF 67
             +YS +E+   LSP+LGNVCF+S+QY++CFTL SFA +YA T   +N QEFA+RLWGD+YF
Sbjct:   291 MYSTDENL-VLSPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYF 349

Query:    68 NSKTK 72
             N KT+
Sbjct:   350 NPKTR 354

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94316	SN114_SCHPO	No assigned EC number	0.5409	0.5660	0.0609	yes	N/A
Q5R6E0	U5S1_PONAB	No assigned EC number	0.6153	0.6037	0.0658	yes	N/A
Q15029	U5S1_HUMAN	No assigned EC number	0.6153	0.6037	0.0658	yes	N/A
A4FUD3	U5S1_BOVIN	No assigned EC number	0.6153	0.6037	0.0658	yes	N/A
Q5F3X4	U5S1_CHICK	No assigned EC number	0.6153	0.6037	0.0658	yes	N/A
O08810	U5S1_MOUSE	No assigned EC number	0.5753	0.6792	0.0741	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
cd04167	213	cd04167, Snu114p, Snu114p, a spliceosome protein,	8e-10
PTZ00416	836	PTZ00416, PTZ00416, elongation factor 2; Provision	1e-08
PLN00116	843	PLN00116, PLN00116, translation elongation factor	3e-07
PTZ00416	836	PTZ00416, PTZ00416, elongation factor 2; Provision	2e-05
cd01885	218	cd01885, EF2, Elongation Factor 2 (EF2) in archaea	2e-05
COG0480	697	COG0480, FusA, Translation elongation factors (GTP	2e-05
PRK07560	731	PRK07560, PRK07560, elongation factor EF-2; Review	1e-04
PLN00116	843	PLN00116, PLN00116, translation elongation factor	3e-04

>gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase

 Score = 53.0 bits (128), Expect = 8e-10
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 18  LSPILGNVCFASTQYAMCFTLHSFASLYA 46
           +SP LGNV FAS+++  CFTL SFA  Y 
Sbjct: 173 VSPELGNVLFASSKFGFCFTLESFAKKYG 201

Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213

>gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 18  LSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
           + P  G V F S      FTL +FA +YA+        +   RLWGD +F++KTK
Sbjct: 196 VYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGV-EESKMMERLWGDNFFDAKTK 249

Length = 836

>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 19  SPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQE--FARRLWGDMYFNSKTK 72
            P  G V F++  +   FTL +FA +YA         E     RLWG+ +F+  TK
Sbjct: 203 YPEKGTVAFSAGLHGWAFTLTNFAKMYAS---KFGVDESKMMERLWGENFFDPATK 255

Length = 843

>gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 14/25 (56%), Positives = 21/25 (84%)

Query: 74  VEPVNPSELPKMLDGLRKVNKSYPL 98
           VEP NP +LPK+++GL+++ KS PL
Sbjct: 487 VEPKNPKDLPKLVEGLKRLAKSDPL 511

Length = 836

>gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 11  GEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYA 46
            +E +   SP  GNV F S      FT+  FA +YA
Sbjct: 172 KQEKW-KFSPQKGNVAFGSALDGWGFTIIKFADIYA 206

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218

>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 74  VEPVNPSELPKMLDGLRKVNKSYPLL 99
           VEP   ++  K+ + L K+ +  P  
Sbjct: 411 VEPKTKADQEKLSEALNKLAEEDPTF 436

Length = 697

>gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 71  TKIVEPVNPSELPKMLDGLRKVNKSYPLL 99
           T  +E  NP +LPK+++ LR++ K  P L
Sbjct: 392 TVAIEAKNPKDLPKLIEVLRQLAKEDPTL 420

Length = 731

>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 74  VEPVNPSELPKMLDGLRKVNKSYPL 98
           V+  N S+LPK+++GL+++ KS P+
Sbjct: 493 VQCKNASDLPKLVEGLKRLAKSDPM 517

Length = 843

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
KOG0469|consensus	842		99.95
KOG0468|consensus	971		99.88
KOG0467|consensus	887		99.7
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.63
PTZ00416	836	elongation factor 2; Provisional	99.5
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.31
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.59
PRK07560	731	elongation factor EF-2; Reviewed	96.56
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	95.79
KOG0468|consensus	971		95.58
PF14492	75	EFG_II: Elongation Factor G, domain II; PDB: 1WDT_	93.44
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	91.8
PRK12739	691	elongation factor G; Reviewed	89.65
PLN00116	843	translation elongation factor EF-2 subunit; Provis	89.5
PTZ00416	836	elongation factor 2; Provisional	87.43
PRK13351	687	elongation factor G; Reviewed	86.9
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	86.2
PRK00007	693	elongation factor G; Reviewed	86.15
KOG0467|consensus	887		86.1
PRK07560	731	elongation factor EF-2; Reviewed	83.86
PRK12740	668	elongation factor G; Reviewed	83.73
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	81.66

>KOG0469|consensus

Probab=99.95  E-value=2.8e-28  Score=205.11  Aligned_cols=77  Identities=30%  Similarity=0.472  Sum_probs=73.2

Q ss_pred             CccccccccccC-CCceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCC
Q psy15097          1 MLASQFDLYSGE-EDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN   78 (106)
Q Consensus         1 ~~n~ii~~~~~~-~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~   78 (106)
                      +||++|+||.++ .++..+.|++|+|.|||++|||+|||++||++|++|| +++..+|+++||||.|||++|++|....
T Consensus       184 ~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF-~~~~~kmm~~LWg~~~f~~ktkk~~~s~  261 (842)
T KOG0469|consen  184 NVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKF-GIDVRKMMNRLWGDNFFNPKTKKWSKSA  261 (842)
T ss_pred             cccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHh-CCcHHHHHHHhhcccccCccCCcccccc
Confidence            589999999986 4789999999999999999999999999999999999 9999999999999999999999999764

>KOG0468|consensus

Probab=99.88  E-value=6.3e-23  Score=176.28  Aligned_cols=90  Identities=43%  Similarity=0.820  Sum_probs=79.3

Q ss_pred             ccccccccccCCCceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCCCC-
Q psy15097          2 LASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPS-   80 (106)
Q Consensus         2 ~n~ii~~~~~~~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~p~-   80 (106)
                      +|.+|++|+.+ ....+||..|||||||+..||||||.+||++|++.+.+++.++|++|||||.||+++|++|.++.|+ 
T Consensus       284 iN~~is~~s~~-~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~  362 (971)
T KOG0468|consen  284 INNLISTFSKD-DNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDG  362 (971)
T ss_pred             hcchhhhcccc-cccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCC
Confidence            68889999887 5688999999999999999999999999999999996799999999999999999999999988764 


Q ss_pred             CCch-----HHHHHHHH
Q psy15097         81 ELPK-----MLDGLRKV   92 (106)
Q Consensus        81 dlpk-----l~e~L~~l   92 (106)
                      ..+.     ++|.|++|
T Consensus       363 ~~~rsFVeFILePlYKi  379 (971)
T KOG0468|consen  363 SGSRSFVEFILEPLYKI  379 (971)
T ss_pred             cccchhhhhhHhHHHHH
Confidence            3333     56677765

>KOG0467|consensus

Probab=99.70  E-value=6.8e-18  Score=146.37  Aligned_cols=95  Identities=25%  Similarity=0.388  Sum_probs=79.7

Q ss_pred             ccccccccccC------------CCceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecC
Q psy15097          2 LASQFDLYSGE------------EDYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNS   69 (106)
Q Consensus         2 ~n~ii~~~~~~------------~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~   69 (106)
                      ||++|++|-.+            ++..+|+|++|||+||||++||+|.+++||++|++|+ +.+.+.+.+.||||+|+++
T Consensus       159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl-~~k~~al~k~lwgd~y~~~  237 (887)
T KOG0467|consen  159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKL-GLKDAALLKFLWGDRYIDP  237 (887)
T ss_pred             hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhc-Chhhhhhhhhhccceeecc
Confidence            78888877311            2478999999999999999999999999999999999 8999999999999999999


Q ss_pred             CCcccc-cCCCCCCchHHH--HHHHHHhhCC
Q psy15097         70 KTKIVE-PVNPSELPKMLD--GLRKVNKSYP   97 (106)
Q Consensus        70 ktkk~~-p~~p~dlpkl~e--~L~~l~~~~~   97 (106)
                      +||++. +.+++-.++|+.  .|.-||+.|-
T Consensus       238 ktk~I~~~~~~~grkplf~~~vle~lw~iy~  268 (887)
T KOG0467|consen  238 KTKRICEGKKLKGRKPLFVQFVLENLWRIYE  268 (887)
T ss_pred             hhhhhhcccCcccCCCccceeehhhHHHHHH
Confidence            999888 445555566665  6667776654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.63  E-value=3.5e-16  Score=136.91  Aligned_cols=76  Identities=26%  Similarity=0.437  Sum_probs=68.1

Q ss_pred             ccccccccccCC-CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCC
Q psy15097          2 LASQFDLYSGEE-DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN   78 (106)
Q Consensus         2 ~n~ii~~~~~~~-~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~   78 (106)
                      +|++|+.|.++. +...|+|.+|||+|||+++||+|++++||.+|.+++ +++.+.|.++||||+||++++++++..+
T Consensus       185 in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~-~~~~~~l~~~lwg~~~~~~~~~~~~~~~  261 (843)
T PLN00116        185 ANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF-GVDESKMMERLWGENFFDPATKKWTTKN  261 (843)
T ss_pred             HHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHh-CCcHHHHHHHhhccceEcCCCceEEecC
Confidence            577788887542 467899999999999999999999999999999999 7899999999999999999999887655

>PTZ00416 elongation factor 2; Provisional

Probab=99.50  E-value=2.2e-14  Score=125.70  Aligned_cols=76  Identities=30%  Similarity=0.469  Sum_probs=64.5

Q ss_pred             ccccccccccCC-CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCC
Q psy15097          2 LASQFDLYSGEE-DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN   78 (106)
Q Consensus         2 ~n~ii~~~~~~~-~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~   78 (106)
                      ||..+..+..+. +.+.|+|..|||.|+|+.+|||||+++|+.+|++++ +++...+.+++|||+||+++++++...+
T Consensus       179 in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~-~~~~~~l~~~~wg~~~~~~~~~~~~~~~  255 (836)
T PTZ00416        179 VNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKF-GVEESKMMERLWGDNFFDAKTKKWIKDE  255 (836)
T ss_pred             HHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhc-CCcHHHHHHHHhccccccCCCCEEEecc
Confidence            455555555432 246799999999999999999999999999999999 8999999999999999999998877543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.31  E-value=6.2e-13  Score=100.87  Aligned_cols=45  Identities=36%  Similarity=0.587  Sum_probs=38.6

Q ss_pred             ccccccccccC------CCceeeecCCCceEeeecccceeeeHHHHHHHHH
Q psy15097          2 LASQFDLYSGE------EDYKYLSPILGNVCFASTQYAMCFTLHSFASLYA   46 (106)
Q Consensus         2 ~n~ii~~~~~~------~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~   46 (106)
                      +|++|.++.++      ++.+.|||++|||+||||++||||||++||++|.
T Consensus       160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~  210 (222)
T cd01885         160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYA  210 (222)
T ss_pred             HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHH
Confidence            67788887543      2457899999999999999999999999999994

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04167 Snu114p Snu114p subfamily

Probab=98.59  E-value=3.1e-08  Score=73.15  Aligned_cols=43  Identities=42%  Similarity=0.703  Sum_probs=34.4

Q ss_pred             cccccccccCCCceeeecCCCceEeeecccceeeeHHHHHHHHH
Q psy15097          3 ASQFDLYSGEEDYKYLSPILGNVCFASTQYAMCFTLHSFASLYA   46 (106)
Q Consensus         3 n~ii~~~~~~~~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~   46 (106)
                      |.++..+.-+ ....|.|.+|||+|+|+++||+||+++||++|.
T Consensus       159 n~~~~~~~~~-~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~  201 (213)
T cd04167         159 NNIIASFSTT-LSFLFSPENGNVCFASSKFGFCFTLESFAKKYG  201 (213)
T ss_pred             HHHHHHhcCC-CceEeccCCCeEEEEecCCCeEEecHHHHhhhh
Confidence            4444444332 237899999999999999999999999999993

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK07560 elongation factor EF-2; Reviewed

Probab=96.56  E-value=0.0011  Score=58.04  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=33.3

Q ss_pred             ccccccccccCC--CceeeecCCCceEeeecccceeeeHHHHHHH
Q psy15097          2 LASQFDLYSGEE--DYKYLSPILGNVCFASTQYAMCFTLHSFASL   44 (106)
Q Consensus         2 ~n~ii~~~~~~~--~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~   44 (106)
                      +|.+|..|.+++  +.+.++|.+|||+|+|+++||+|+++.+.+.
T Consensus       174 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~  218 (731)
T PRK07560        174 VNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKT  218 (731)
T ss_pred             HHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHh
Confidence            355666665442  3567899999999999999999998877653

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=95.79  E-value=0.0034  Score=54.89  Aligned_cols=41  Identities=22%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             cccccccccCC--CceeeecCCCceEeeecccceeeeHHHHHH
Q psy15097          3 ASQFDLYSGEE--DYKYLSPILGNVCFASTQYAMCFTLHSFAS   43 (106)
Q Consensus         3 n~ii~~~~~~~--~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~   43 (106)
                      |.++..+.+++  +.+.++|..|||+|+|++++|+|++++|.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~  216 (720)
T TIGR00490       174 NKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKK  216 (720)
T ss_pred             HhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhh
Confidence            44444443332  346789999999999999999999998844

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0468|consensus

Probab=95.58  E-value=0.0062  Score=54.18  Aligned_cols=26  Identities=81%  Similarity=1.338  Sum_probs=23.9

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTL  101 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~  101 (106)
                      |.+|+|+|||+|||++++|+||.+.+
T Consensus       593 P~nPsELPKmldgLrKinKsYPl~~t  618 (971)
T KOG0468|consen  593 PLNPSELPKMLDGLRKINKSYPLVIT  618 (971)
T ss_pred             cCChhhhhHHHHHHHhhcccCCcEEE
Confidence            67999999999999999999999754

>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H

Probab=93.44  E-value=0.021  Score=36.43  Aligned_cols=30  Identities=30%  Similarity=0.535  Sum_probs=26.0

Q ss_pred             ccccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      .+.|.++.|.++|.++|.+|+..||++++-
T Consensus         9 ~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~   38 (75)
T PF14492_consen    9 AIEPKNKEDEPKLSEALQKLSEEDPSLRVE   38 (75)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred             EEEECCHhHHHHHHHHHHHHHhcCCeEEEE
Confidence            467889999999999999999999998864

...

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=91.80  E-value=0.12  Score=45.79  Aligned_cols=30  Identities=23%  Similarity=0.405  Sum_probs=26.6

Q ss_pred             cccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097         74 VEPVNPSELPKMLDGLRKVNKSYPLLTLLQ  103 (106)
Q Consensus        74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~  103 (106)
                      +.|++++|++||.|+|++|++.||++++..
T Consensus       411 vepk~~~d~~Kl~~aL~~l~~eDPt~~v~~  440 (697)
T COG0480         411 VEPKTKADQEKLSEALNKLAEEDPTFRVET  440 (697)
T ss_pred             EeECChhhHHHHHHHHHHHHhhCCceEEEE
Confidence            346789999999999999999999998864

>PRK12739 elongation factor G; Reviewed

Probab=89.65  E-value=0.25  Score=43.06  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.++.|.++|.++|++|++.||+++|.
T Consensus       412 p~~~~d~~kL~~aL~~L~~eDpsl~v~  438 (691)
T PRK12739        412 PKTKADQDKMGLALQKLAEEDPTFRVE  438 (691)
T ss_pred             ECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence            568899999999999999999999985

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=89.50  E-value=0.25  Score=44.16  Aligned_cols=31  Identities=35%  Similarity=0.626  Sum_probs=27.1

Q ss_pred             ccccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097         73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLLQ  103 (106)
Q Consensus        73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~  103 (106)
                      .+.|.+++|.++|.+||++|++.||++++.+
T Consensus       492 aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~  522 (843)
T PLN00116        492 AVQCKNASDLPKLVEGLKRLAKSDPMVQCTI  522 (843)
T ss_pred             EEEECChhhHHHHHHHHHHHHHhCCCeEEEE
Confidence            3447789999999999999999999999753

>PTZ00416 elongation factor 2; Provisional

Probab=87.43  E-value=0.32  Score=43.51  Aligned_cols=31  Identities=45%  Similarity=0.850  Sum_probs=27.1

Q ss_pred             ccccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097         73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLLQ  103 (106)
Q Consensus        73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~  103 (106)
                      .+.|.+++|.++|.++|++|++.||++++.+
T Consensus       486 aIep~~~~d~~kL~~aL~~L~~eDPsl~~~~  516 (836)
T PTZ00416        486 AVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT  516 (836)
T ss_pred             EEEECCHHHHHHHHHHHHHHHhhCCceEEEE
Confidence            3447889999999999999999999998754

>PRK13351 elongation factor G; Reviewed

Probab=86.90  E-value=0.57  Score=40.69  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=26.0

Q ss_pred             cccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         74 VEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      +.|.+++|.++|.++|++|++.||++++.
T Consensus       409 Iep~~~~d~~kL~~aL~~L~~eDpsl~v~  437 (687)
T PRK13351        409 VEPERRGDEQKLAEALEKLVWEDPSLRVE  437 (687)
T ss_pred             EEECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence            34678999999999999999999999986

>TIGR00484 EF-G translation elongation factor EF-G

Probab=86.20  E-value=0.56  Score=40.89  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=24.8

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.++.|.++|.++|++|++.||+++|.
T Consensus       413 p~~~~d~~kL~~aL~~L~~eDpsl~v~  439 (689)
T TIGR00484       413 PKTKADQEKMGIALGKLAEEDPTFRTF  439 (689)
T ss_pred             ECCcccHHHHHHHHHHHHHhCCEEEEE
Confidence            568899999999999999999999984

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00007 elongation factor G; Reviewed

Probab=86.15  E-value=0.58  Score=40.92  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.++.|.++|.++|++|++.||+++|.
T Consensus       415 p~~~~d~~kL~~aL~~L~~eDpsl~v~  441 (693)
T PRK00007        415 PKTKADQEKMGIALQKLAEEDPSFRVS  441 (693)
T ss_pred             ECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence            567899999999999999999999985

>KOG0467|consensus

Probab=86.10  E-value=0.18  Score=45.43  Aligned_cols=27  Identities=30%  Similarity=0.739  Sum_probs=24.8

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.+|+|+++++++||.+++.||||+++
T Consensus       478 p~~p~em~~L~~glkll~~adp~v~i~  504 (887)
T KOG0467|consen  478 PDDPDEMDKLVEGLKLLNQADPFVKIR  504 (887)
T ss_pred             cCChHHhHHHHHHHHhhcccchhhHHH
Confidence            568999999999999999999999874

>PRK07560 elongation factor EF-2; Reviewed

Probab=83.86  E-value=0.64  Score=40.89  Aligned_cols=27  Identities=37%  Similarity=0.678  Sum_probs=24.5

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.+++|.++|.++|.+|++.||+++|.
T Consensus       397 p~~~~d~~kL~~aL~~L~~eDPsl~v~  423 (731)
T PRK07560        397 AKNPKDLPKLIEVLRQLAKEDPTLVVK  423 (731)
T ss_pred             ECCHHHHHHHHHHHHHHHhhCCcEEEE
Confidence            457889999999999999999999885

>PRK12740 elongation factor G; Reviewed

Probab=83.73  E-value=0.87  Score=39.30  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.+++|.++|.++|++|++.||+++|.
T Consensus       394 p~~~~d~~~L~~aL~~l~~~Dpsl~v~  420 (668)
T PRK12740        394 PKDKGDEEKLSEALGKLAEEDPTLRVE  420 (668)
T ss_pred             ECCcchHHHHHHHHHHHHHhCCeEEEE
Confidence            457889999999999999999999985

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=81.66  E-value=0.83  Score=40.15  Aligned_cols=28  Identities=36%  Similarity=0.589  Sum_probs=25.3

Q ss_pred             ccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         75 EPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        75 ~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      .|.+++|.++|.++|.+|++.||++++.
T Consensus       396 ~p~~~~d~~kL~~aL~~L~~eDPsl~v~  423 (720)
T TIGR00490       396 EAKNTKDLPKLIEVLRQVAKEDPTVHVE  423 (720)
T ss_pred             EECCHHHHHHHHHHHHHHHhhCCeEEEE
Confidence            3568899999999999999999999885

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
1u2r_A	842	Crystal Structure Of Adp-Ribosylated Ribosomal Tran		3e-05
1n0v_C	842	Crystal Structure Of Elongation Factor 2 Length = 8		3e-05

>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 20  PILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
           P  G V F S  +   FT+  FA+ YA+    ++  +   RLWGD +FN KTK
Sbjct: 204 PARGTVAFGSGLHGWAFTIRQFATRYAKKF-GVDKAKMMDRLWGDSFFNPKTK 255

>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 20  PILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTK 72
           P  G V F S  +   FT+  FA+ YA+    ++  +   RLWGD +FN KTK
Sbjct: 204 PARGTVAFGSGLHGWAFTIRQFATRYAKKF-GVDKAKMMDRLWGDSFFNPKTK 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	2e-12
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	1e-07

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842

 Score = 60.4 bits (146), Expect = 2e-12
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 17  YLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEP 76
            + P  G V F S  +   FT+  FA+ YA+    ++  +   RLWGD +FN KTK    
Sbjct: 201 QVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFG-VDKAKMMDRLWGDSFFNPKTKKWTN 259

Query: 77  VNPSELPKML 86
            +     K L
Sbjct: 260 KDTDAEGKPL 269

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 65  MYFNSKTKI---VEPVNPSELPKMLDGLRKVNKSYPLL 99
           M F+    +   VE  N ++LPK+++GL++++KS P +
Sbjct: 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV 518

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.33
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	93.96
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	88.19
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	87.87
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	87.68
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	85.82
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	85.69
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	80.36

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.33  E-value=1.3e-12  Score=112.99  Aligned_cols=76  Identities=30%  Similarity=0.488  Sum_probs=64.1

Q ss_pred             ccccccccccCC-CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCC
Q psy15097          2 LASQFDLYSGEE-DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVN   78 (106)
Q Consensus         2 ~n~ii~~~~~~~-~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~   78 (106)
                      +|..+++|.+.. +++.++|..++|.|+||++||+||+++||++|++++ +++.+.+.+++|||+||+++++++....
T Consensus       185 i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~-~~~~~~l~~~~~~d~~~~~~~~~~~~~~  261 (842)
T 1n0u_A          185 VNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKF-GVDKAKMMDRLWGDSFFNPKTKKWTNKD  261 (842)
T ss_dssp             HHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTT-TSCHHHHHHHTSSSCEEETTTTEEESCS
T ss_pred             HHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhc-CCCHHHHHHHHhccccccCCCCeEEEec
Confidence            344555554432 456789999999999999999999999999999999 7999999999999999999888887543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=93.96  E-value=0.027  Score=47.64  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=26.2

Q ss_pred             cccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         74 VEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      +.|.+++|+++|.++|+||++.||++++.
T Consensus       423 vep~~~~d~~kL~~~L~kL~~eDPsl~v~  451 (709)
T 4fn5_A          423 VEPKTKADQEKMGIALGKLAQEDPSFRVK  451 (709)
T ss_dssp             ECBSSTTTHHHHHHHHHHHHHHCTTCEEE
T ss_pred             EecCCHHHhhhhHHHHHHHHHhCCeEEEE
Confidence            44778999999999999999999999875

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=88.19  E-value=0.18  Score=43.63  Aligned_cols=30  Identities=37%  Similarity=0.655  Sum_probs=26.8

Q ss_pred             cccCCCCCCchHHHHHHHHHhhCCceeEEe
Q psy15097         74 VEPVNPSELPKMLDGLRKVNKSYPLLTLLQ  103 (106)
Q Consensus        74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~~  103 (106)
                      +.|++++|.++|.++|+||++.||++++..
T Consensus       493 vep~~~~d~~kl~~~L~kL~~eDp~l~v~~  522 (842)
T 1n0u_A          493 VEVKNANDLPKLVEGLKRLSKSDPCVLTYM  522 (842)
T ss_dssp             EEESSGGGHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEECCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence            457889999999999999999999998853

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=87.87  E-value=0.19  Score=42.55  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=24.8

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.+++|.++|.++|+||++.||++++.
T Consensus       422 p~~~~d~~kl~~~L~~L~~eDp~l~v~  448 (704)
T 2rdo_7          422 PKTKADQEKMGLALGRLAKEDPSFRVW  448 (704)
T ss_pred             ECChHHHHHHHHHHHHHHhhCCEEEEE
Confidence            568889999999999999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=87.68  E-value=0.12  Score=43.69  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=24.7

Q ss_pred             cCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         76 PVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        76 p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      |.+++|.++|.++|++|++.||++++.
T Consensus       414 p~~~~d~~kl~~~L~~l~~eDp~l~~~  440 (693)
T 2xex_A          414 PKSKADQDKMTQALVKLQEEDPTFHAH  440 (693)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             eCCchhHHHHHHHHHHHHhhCCeEEEE
Confidence            567889999999999999999999875

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=85.82  E-value=0.12  Score=43.14  Aligned_cols=29  Identities=38%  Similarity=0.622  Sum_probs=25.3

Q ss_pred             cccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         74 VEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      +.|.+++|.++|.++|++|++.||++++.
T Consensus       349 iep~~~~d~~kL~~aL~kL~~eDPsl~v~  377 (638)
T 3j25_A          349 VEPSKPEQREMLLDALLEISDSDPLLRYY  377 (638)
T ss_dssp             EECCSHHHHHHHHHHHHHHHHTCTTCCCC
T ss_pred             eccCChHHHHHHHHHHHHHhhcCCeeEEE
Confidence            34668889999999999999999998864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=85.69  E-value=0.19  Score=42.41  Aligned_cols=29  Identities=17%  Similarity=0.386  Sum_probs=8.1

Q ss_pred             cccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         74 VEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        74 ~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      +.|.+++|.++|.++|+||++.||++++.
T Consensus       413 i~p~~~~d~~kl~~~L~~l~~eDp~l~v~  441 (691)
T 1dar_A          413 IEPKTKADQEKLSQALARLAEEDPTFRVS  441 (691)
T ss_dssp             --------------------CCCCSCEEE
T ss_pred             EEECCchhHHHHHHHHHHHHhhCCeEEEE
Confidence            34668899999999999999999999875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=80.36  E-value=0.41  Score=40.21  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=24.9

Q ss_pred             ccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         75 EPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        75 ~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      .|.+++|.++|.++|+||++.||++++.
T Consensus       388 ~p~~~~d~~kl~~~L~~l~~edp~l~v~  415 (665)
T 2dy1_A          388 HPKGRTDEARLGEALRKLLEEDPSLKLE  415 (665)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             EECChhhHHHHHHHHHHHHHhCCeEEEE
Confidence            3567889999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1n0ua2	341	c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-	3e-13
d1n0ua4	79	d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2)	8e-05
d2bv3a4	75	d.58.11.1 (A:404-478) Elongation factor G (EF-G) {	0.001

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (149), Expect = 3e-13
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 17  YLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEP 76
            + P  G V F S  +   FT+  FA+ YA+    ++  +   RLWGD +FN KTK    
Sbjct: 199 QVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFG-VDKAKMMDRLWGDSFFNPKTKKWTN 257

Query: 77  VNPSELPKML 86
            +     K L
Sbjct: 258 KDTDAEGKPL 267

>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: EF-G C-terminal domain-like
family: EF-G/eEF-2 domains III and V
domain: Elongation factor 2 (eEF-2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (83), Expect = 8e-05
 Identities = 11/26 (42%), Positives = 21/26 (80%)

Query: 74 VEPVNPSELPKMLDGLRKVNKSYPLL 99
          VE  N ++LPK+++GL++++KS P +
Sbjct: 12 VEVKNANDLPKLVEGLKRLSKSDPCV 37

>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: EF-G C-terminal domain-like
family: EF-G/eEF-2 domains III and V
domain: Elongation factor G (EF-G)
species: Thermus thermophilus [TaxId: 274]

 Score = 32.8 bits (75), Expect = 0.001
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 74 VEPVNPSELPKMLDGLRKVNKSYP 97
          +EP   ++  K+   L ++ +  P
Sbjct: 10 IEPKTKADQEKLSQALARLAEESP 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.91
d1n0ua4	79	Elongation factor 2 (eEF-2) {Baker's yeast (Saccha	95.02
d2bv3a4	75	Elongation factor G (EF-G) {Thermus thermophilus [	93.69
d2dy1a4	77	Elongation factor G (EF-G) {Thermus thermophilus,	93.13

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7e-26  Score=178.05  Aligned_cols=96  Identities=26%  Similarity=0.396  Sum_probs=83.2

Q ss_pred             ccccccccccCC-CceeeecCCCceEeeecccceeeeHHHHHHHHHhhCCCCCHHHHHHhhhccceecCCCcccccCCCC
Q psy15097          2 LASQFDLYSGEE-DYKYLSPILGNVCFASTQYAMCFTLHSFASLYAQTSPTLNTQEFARRLWGDMYFNSKTKIVEPVNPS   80 (106)
Q Consensus         2 ~n~ii~~~~~~~-~~~~~sP~~GNV~FaSal~gw~Ftl~sFA~~Y~~k~~~~~~~~l~k~LWGd~Y~~~ktkk~~p~~p~   80 (106)
                      ||..|.+++++. +.+.++|++|||+||||++|||||+++||++|++|+ +++.++|.++||||+|||+++|+|.+.++.
T Consensus       183 vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~Ftl~~fa~~y~~k~-~~~~~~l~~~LWGd~y~~~~~kk~~~~~~~  261 (341)
T d1n0ua2         183 VNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKF-GVDKAKMMDRLWGDSFFNPKTKKWTNKDTD  261 (341)
T ss_dssp             HHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTT-TSCHHHHHHHTSSSCEEETTTTEEESCSBC
T ss_pred             ccceeeecccccccccccCcccCceEecccccCeEEeeHHHHHHHHHHh-CCCHHHHHHHhccCcccccccceeeccCCc
Confidence            688898888764 678899999999999999999999999999999999 899999999999999999999999876543


Q ss_pred             ----CCchH-HH-HHHHHHhhCCc
Q psy15097         81 ----ELPKM-LD-GLRKVNKSYPL   98 (106)
Q Consensus        81 ----dlpkl-~e-~L~~l~~~~~~   98 (106)
                          .++.+ ++ .|.-|++.|+.
T Consensus       262 ~~~~~lk~~FVqfILepI~ki~~~  285 (341)
T d1n0ua2         262 AEGKPLERAFNMFILDPIFRLFTA  285 (341)
T ss_dssp             TTCCBCCBHHHHHTHHHHHHHHHH
T ss_pred             ccCCcccceeeeeeHHHHHHHHHH
Confidence                23444 44 78888888864

>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: EF-G C-terminal domain-like
family: EF-G/eEF-2 domains III and V
domain: Elongation factor 2 (eEF-2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0044  Score=37.78  Aligned_cols=30  Identities=37%  Similarity=0.657  Sum_probs=27.0

Q ss_pred             ccccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      .+.|.+++|.++|.+||.+|.+.||++++.
T Consensus        11 aiep~~~~d~~kL~~aL~kl~~eDpsl~v~   40 (79)
T d1n0ua4          11 AVEVKNANDLPKLVEGLKRLSKSDPCVLTY   40 (79)
T ss_dssp             EEEESSGGGHHHHHHHHHHHHHHCTTCEEE
T ss_pred             EEEECCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence            456889999999999999999999999874

>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: EF-G C-terminal domain-like
family: EF-G/eEF-2 domains III and V
domain: Elongation factor G (EF-G)
species: Thermus thermophilus [TaxId: 274]

Probab=93.69  E-value=0.0095  Score=35.95  Aligned_cols=30  Identities=17%  Similarity=0.393  Sum_probs=8.7

Q ss_pred             ccccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      .+.|.+.+|..+|.+||.+|...||++++-
T Consensus         9 ai~p~~~~D~~kl~~aL~~L~~EDPsl~~~   38 (75)
T d2bv3a4           9 AIEPKTKADQEKLSQALARLAEESPTFSVS   38 (75)
T ss_dssp             BCCC-------------------CCSCEEE
T ss_pred             EEEECCHhHHHHHHHHHHHHHhhCCceEEE
Confidence            467889999999999999999999999875

>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: EF-G C-terminal domain-like
family: EF-G/eEF-2 domains III and V
domain: Elongation factor G (EF-G)
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.13  E-value=0.008  Score=36.30  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=27.0

Q ss_pred             ccccCCCCCCchHHHHHHHHHhhCCceeEE
Q psy15097         73 IVEPVNPSELPKMLDGLRKVNKSYPLLTLL  102 (106)
Q Consensus        73 k~~p~~p~dlpkl~e~L~~l~~~~~~~~~~  102 (106)
                      .+.|.+.+|..+|.++|.+|.+.||++++.
T Consensus         9 ai~p~~~~d~~kl~~aL~~L~~eDPsl~v~   38 (77)
T d2dy1a4           9 ALHPKGRTDEARLGEALRKLLEEDPSLKLE   38 (77)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             EEEECCHHHHHHHHHHHHHHHhhcCeEEEE
Confidence            466888999999999999999999998875