Psyllid ID: psy15122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------
Protein Sequence
MDLQDILEEQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEALQTGRPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKRQNDRPMGAERRAQLNRSRSRNGIVITRELSNEVLIGNA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHccccccccccccccHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccEEccccccHHHcccccccccHHHHHHHHHHHHccccccHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHcccccccccccHHHHHcHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccHHcccccccccccccccHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHccccccccHEEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccccccEcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccEEHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHccHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccccccHHHccccccccccHHHccccccccccccccccccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDLQDILEEQENMLEKLNPEQLNQKFEDMLndmnlsdekkeplrrqplanKKKMLLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLndmnlsdekkeplrrqplanKKKMLLMHYKGTVTSyenkskfdkpieYIQYLSQPELSVNKMYSCIESLRIAltnhplswvnefvlqdnknfrkypiaflyprfpsrsrndsrydrVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARsldpnkptVMLEAVKVLAAVclippdghdKVIKAITMSgelkgkerfQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFirddqnmvmdsaCEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVlhrggcdpdfrssrrfqldvQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLedlssgrpveknRLDEVKAQVAagiptgpkggppppppppggmgpppppmpgmpgpppppmpemytdchkNIINGKQACEEVKQSKKLAKILELILLMGNymnsgsrnggafgFEINFLtklsstkdienKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIqnckqapvanendkFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEALqtgrpkktgssiksvgcpshsalqtgsaFTREQRRkrqndrpmgaERRAQLNRSRSRNGIVITRELSNEVLIGNA
Flexible Loop (DISEMBL)
MDLQDILEEQENMLEKLNPEQLNQKFEDMLNDMnlsdekkeplrrqplankkkMLLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMnlsdekkeplrrqplankkkMLLMHYKGTVtsyenkskfDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAflyprfpsrsrndsrydRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVehlaekskteedrrvEDLSAKLEEAIMLRQEAEAKLVQAQKtledlssgrpveknRLDEVKAQVAagiptgpkggPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIklreaeeksirvrearekaenekkdkaarKKALidmttdqtqqgVMDSLLEALQTGRPKKTgssiksvgcpshsalqtgsaftreqrrkrqndrpmgaerraqlnrsrsrngivitrelsnevligna
Low Complexity Region (SEG)
MDLQDILEEQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTgpkggppppppppggmgpppppmpgmpgpppppmpEMYTDCHKNIINGKQACEEVKQSkklakilelillMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIrvrearekaenekkdkaarkkaLIDMTTDQTQQGVMDSLLEALQTGRPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKRQNDRPMGAERRAQLNRSRSRNGIVITRELSNEVLIGNA
Disordered region (IsUnstruct)
********************************************************MHY*******************************************************MLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR**NDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDV*****************************************************************************************************************DCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKL******************************************************************************************************************************
Disordered Region (DISOPRED)
********************QLNQKFEDM*******************************************************QKFEDMLNDM******************KKMLLMH*******************YIQYLSQ*********************************DNKNFRKYPIAFL****************VQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECV**********************DVQP***************************************************************************************MGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNL******************FLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENI*************************************************************************************************************************E*LIG**
Disordered Region (DISEMBL)
MDLQDILEEQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAE**********EDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRV******************KALIDMTTDQTQQGVMDSLLEALQT**************************************************RSRSRNGIVITRELSNEVLIGNA
Disordered Region (DISPRO)
****DILEEQENMLEKLNPEQLNQKFEDMLNDMNLSD*************************VTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGT*********FDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPK************MGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEE****************************************S********************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLQDILEEQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSxxxxxxxxxxxxxxxxxxxxxxxxxxxxPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTDQTQQGVMDSLLEALQTGRPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKRQNDRPMGAERRAQLNRSRSRNGIVITRELSNEVLIGNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	927	2.2.26 [Sep-21-2011]
P48608	1091	Protein diaphanous OS=Dro	yes	N/A	0.433	0.368	0.403	1e-94
O70566	1098	Protein diaphanous homolo	yes	N/A	0.453	0.382	0.359	1e-84
O08808	1255	Protein diaphanous homolo	no	N/A	0.497	0.367	0.351	3e-84
O60610	1272	Protein diaphanous homolo	yes	N/A	0.497	0.362	0.347	1e-82
O60879	1101	Protein diaphanous homolo	no	N/A	0.446	0.376	0.364	4e-82
Q9NSV4	1193	Protein diaphanous homolo	no	N/A	0.539	0.419	0.331	6e-78
Q9Z207	1171	Protein diaphanous homolo	no	N/A	0.462	0.366	0.335	1e-73
Q80U19	1115	Disheveled-associated act	no	N/A	0.468	0.389	0.261	2e-30
Q9Y4D1	1078	Disheveled-associated act	no	N/A	0.463	0.398	0.254	5e-28
Q54WH2	1218	Formin-A OS=Dictyostelium	yes	N/A	0.276	0.210	0.308	5e-28

>sp|P48608|DIA_DROME Protein diaphanous OS=Drosophila melanogaster GN=dia PE=2 SV=2

 Score =  348 bits (894), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/453 (40%), Positives = 279/453 (61%), Gaps = 51/453 (11%)

Query: 72  ENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENK- 130
           E  +++L+  +L+ KF +++ DMN+  +K+EPL  +    ++KM++ H KG   S E   
Sbjct: 56  EQYIQQLSVAELDAKFLEIIEDMNIPKDKREPLLAKSKEERQKMIMWHLKGK-NSLERSA 114

Query: 131 -SKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIA 189
            S+F+KPI+Y++YL   E S +K+Y C+ESLR+ALT++P+SW+ EF +       K    
Sbjct: 115 NSRFEKPIDYVEYLQNGEHSTHKVYQCVESLRVALTSNPISWIKEFGVAGIGTIEK---- 170

Query: 190 FLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFG--QKEALTIVARSLDPNK 247
                  +RS+N++ Y+++++E +RC++AIMNNT GL  +    Q   + ++A+SLDP K
Sbjct: 171 -----LLARSKNNASYEKIEFEAIRCLKAIMNNTWGLNVVLNPDQHSVVLLLAQSLDPRK 225

Query: 248 PTVMLEAVKVLAAVCLI-PPDGHDKVIKAITM--SGELKGKERFQPVVQGLMVKGNNEAL 304
           P  M EA+K+LA+ C++   +G++KV++AIT   +   K  ERF+P+V  L      +  
Sbjct: 226 PQTMCEALKLLASFCIVYERNGYEKVLRAITTIAATSFKASERFRPIVDALFASDQQDPK 285

Query: 305 R-TAC--LQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLD----ALEKDASEDVSVQLK 357
           R  AC  L  IN +  TP DL FRLHLR EIMR+GLYD LD     +E   +E++    K
Sbjct: 286 RDLACHSLIFINTLTNTPTDLNFRLHLRCEIMRMGLYDRLDEFTKIVEASNNENLQQHFK 345

Query: 358 VFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDD 417
           +F E +E+D+ EF+QRFDNV   +DD  DCF+ ++N+V D+  EPY LSILQHLL     
Sbjct: 346 IFNEIREDDFEEFVQRFDNVTFNMDDATDCFDVLKNLVTDTTSEPYFLSILQHLL----- 400

Query: 418 QNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRR 477
                                +IRDD Y R AYY+L+EEC+SQIV H+G CDP+F  +R 
Sbjct: 401 ---------------------YIRDDFYFRPAYYQLIEECISQIVFHKGYCDPNFE-NRN 438

Query: 478 FQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEE 510
           F +D   L++ + EK+K +E +R E+   K+E+
Sbjct: 439 FNIDTSLLLDDIVEKAKAKESKRSEEYEKKIEQ 471

Required for cytokinesis in both mitosis and meiosis. Has a role in actin cytoskeleton organization and is essential for many, if not all, actin-mediated events involving membrane invagination. May serve as a mediator between signaling molecules and actin organizers at specific phases of the cell cycle. Possible component of the contractile ring or may control its function.
Drosophila melanogaster (taxid: 7227)

>sp|O70566|DIAP2_MOUSE Protein diaphanous homolog 2 OS=Mus musculus GN=Diaph2 PE=1 SV=2

 Score =  315 bits (807), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 287/492 (58%), Gaps = 72/492 (14%)

Query: 87  FEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSY----------ENKSKFD-K 135
           FE M+ DMNL++EKK PLR++  + K++M++ +   T  S            +K +F   
Sbjct: 102 FEKMMEDMNLNEEKKAPLRKKDFSIKREMVVQYISATSKSIVGSKVLGGLKNSKHEFTLS 161

Query: 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEF------VLQDNKNFRKYPIA 189
             EY+  L +  +S  K+ +C+ESLR++LT+HP+SWVN F      VL D          
Sbjct: 162 SQEYVHEL-RSGISDEKLLNCLESLRVSLTSHPVSWVNNFGYEGLGVLLD---------- 210

Query: 190 FLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPT 249
            +  +   + + ++   + QY+ ++C++A MNN  GL+++ G + +L ++AR++DP +  
Sbjct: 211 -VLEKLLDKKQQENIDKKNQYKVIQCLKAFMNNKFGLQRILGDERSLLLLARAIDPKQQN 269

Query: 250 VMLEAVKVLAAVCLIPPDG-HDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEAL--RT 306
           +M E VK+L+A+C++  +   DK++  IT + EL  +ERF P+V+GL    NNEAL  + 
Sbjct: 270 MMTEIVKILSAICIVGEENILDKLLGGITAAAELNNRERFSPIVEGL---ENNEALHLQV 326

Query: 307 ACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEED 366
           AC+Q INA+V +P DL+FR+HLRNE +R GL  +L  L++  +E + +QL+VF E+KE+D
Sbjct: 327 ACMQFINALVTSPYDLDFRIHLRNEFLRCGLKAMLPTLKEIENEGLDIQLRVFEENKEDD 386

Query: 367 YYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSAC 426
             E   R +++R E+DD+N+ +  + NM+ D+A EPYLLSILQH                
Sbjct: 387 LSELSHRLNDIRAEMDDINEVYHLLYNMLKDTAAEPYLLSILQH---------------- 430

Query: 427 EPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLV 486
                      L IR+D Y+R  YYK++EECVSQIVLH  G DPDF+  +R   D   L+
Sbjct: 431 ----------FLLIRNDYYIRPQYYKIIEECVSQIVLHCSGMDPDFKYRQRIDFDFTHLL 480

Query: 487 EHLAEKSKTEE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDE 545
           +    K+K EE +++  + S K +E    RQEA+A+L +  + +++L +          E
Sbjct: 481 DACVNKAKVEENEQKAMEFSKKFDEEFTARQEAQAELQKRDEKIKELET----------E 530

Query: 546 VKAQVAAGIPTG 557
           ++     G+P+ 
Sbjct: 531 IQQLRGQGVPSA 542

May be involved in oogenesis.

Mus musculus (taxid: 10090)

>sp|O08808|DIAP1_MOUSE Protein diaphanous homolog 1 OS=Mus musculus GN=Diaph1 PE=1 SV=1

 Score =  313 bits (803), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 287/498 (57%), Gaps = 37/498 (7%)

Query: 59  YKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLM 118
           ++ +  SY +      L+ ++ EQ+   FE ML DMNL++EK++PLR + +  K++M+  
Sbjct: 59  HRNSSASYGDDPTAQSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQ 118

Query: 119 HYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQ 178
           +   +      K      + YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +
Sbjct: 119 YLHTSKAGMNQKESSRSAMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAE 177

Query: 179 DNKNFRKYPIAFLYPRFPSRSRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALT 237
              +     +  L      +      YD R Q+E +RC++A MNN  G+K M   +E + 
Sbjct: 178 GLASL----LDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 233

Query: 238 IVARSLDPNKPTVMLEAVKVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGL 295
           ++ R++DP  P +M++A K+L+A+C++P   D +++V++A+T   E+   ERFQP++ GL
Sbjct: 234 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 293

Query: 296 MVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQ 355
              G + AL+  CLQLINA++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQ
Sbjct: 294 K-SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 352

Query: 356 LKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIR 415
           L VF E  +ED+++   R D++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R
Sbjct: 353 LCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVR 412

Query: 416 DDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSS 475
           +D                             R  YYKL+EECVSQIVLH+ G DPDF+  
Sbjct: 413 NDYE--------------------------ARPQYYKLIEECVSQIVLHKNGTDPDFK-C 445

Query: 476 RRFQLDVQPLVEHLAEKSKTEE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSS 534
           R  Q+D++ LV+ + +K+K E+ + +  +L  KL+  +  R E + ++ + +   E    
Sbjct: 446 RHLQIDIERLVDQMIDKTKVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQ 505

Query: 535 GRPVEKNRLDEVKAQVAA 552
               EK+ LD  K Q+ A
Sbjct: 506 DLQGEKDALDSEKQQITA 523

Acts in a Rho-dependent manner to recruit PFY1 to the membrane. Required for the assembly of F-actin structures, such as actin cables and stress fibers. Nucleates actin filaments. Binds to the barbed end of the actin filament and slows down actin polymerization and depolymerization. Required for cytokinesis, and transcriptional activation of the serum response factor. DFR proteins couple Rho and Src tyrosine kinase during signaling and the regulation of actin dynamics. Functions as a scaffold protein for MAPRE1 and APC to stabilize microtubules and promote cell migration. Has neurite outgrowth promoting activity. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape.

Mus musculus (taxid: 10090)

>sp|O60610|DIAP1_HUMAN Protein diaphanous homolog 1 OS=Homo sapiens GN=DIAPH1 PE=1 SV=2

 Score =  308 bits (790), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 173/498 (34%), Positives = 285/498 (57%), Gaps = 37/498 (7%)

Query: 59  YKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLM 118
           ++ +  SY +      L+ ++ EQ+   FE ML DMNL++EK++PLR + +  K++M+  
Sbjct: 68  HRNSSASYGDDPTAQSLQDVSDEQVLVLFEQMLLDMNLNEEKQQPLREKDIIIKREMVSQ 127

Query: 119 HYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQ 178
           +   +      K      + YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +
Sbjct: 128 YLYTSKAGMSQKESSKSAMMYIQEL-RSGLRDMPLLSCLESLRVSLNNNPVSWVQTFGAE 186

Query: 179 DNKNFRKYPIAFLYPRFPSRSRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALT 237
              +     +  L      +      YD R ++E +RC++A MNN  G+K M   +E + 
Sbjct: 187 GLASL----LDILKRLHDEKEETAGSYDSRNKHEIIRCLKAFMNNKFGIKTMLETEEGIL 242

Query: 238 IVARSLDPNKPTVMLEAVKVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGL 295
           ++ R++DP  P +M++A K+L+A+C++P   D +++V++A+T   E+   ERFQP++ GL
Sbjct: 243 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 302

Query: 296 MVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQ 355
              G   AL+  CLQLINA++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQ
Sbjct: 303 K-SGTTIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQDLREIENEDMRVQ 361

Query: 356 LKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIR 415
           L VF E  EED Y+   R D++RME+DD N+ F+ + N V DS  EP+ LSILQHLL +R
Sbjct: 362 LNVFDEQGEEDSYDLKGRLDDIRMEMDDFNEVFQILLNTVKDSKAEPHFLSILQHLLLVR 421

Query: 416 DDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSS 475
           +D                             R  YYKL+EEC+SQIVLH+ G DPDF+  
Sbjct: 422 NDYE--------------------------ARPQYYKLIEECISQIVLHKNGADPDFK-C 454

Query: 476 RRFQLDVQPLVEHLAEKSKTEE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSS 534
           R  Q++++ L++ + +K+K E+ + +  +L  KL+  +  R E + ++ + +   E    
Sbjct: 455 RHLQIEIEGLIDQMIDKTKVEKSEAKAAELEKKLDSELTARHELQVEMKKMESDFEQKLQ 514

Query: 535 GRPVEKNRLDEVKAQVAA 552
               EK+ L   K Q+A 
Sbjct: 515 DLQGEKDALHSEKQQIAT 532

Acts in a Rho-dependent manner to recruit PFY1 to the membrane. Required for the assembly of F-actin structures, such as actin cables and stress fibers. Nucleates actin filaments. Binds to the barbed end of the actin filament and slows down actin polymerization and depolymerization. Required for cytokinesis, and transcriptional activation of the serum response factor. DFR proteins couple Rho and Src tyrosine kinase during signaling and the regulation of actin dynamics. Functions as a scaffold protein for MAPRE1 and APC to stabilize microtubules and promote cell migration (By similarity). Has neurite outgrowth promoting activity (By similarity). In hear cells, it may play a role in the regulation of actin polymerization in hair cells. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape.

Homo sapiens (taxid: 9606)

>sp|O60879|DIAP2_HUMAN Protein diaphanous homolog 2 OS=Homo sapiens GN=DIAPH2 PE=1 SV=1

 Score =  306 bits (785), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 277/455 (60%), Gaps = 41/455 (9%)

Query: 87  FEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENK-SKFDKPIEYIQYLSQ 145
           FE M+ DMNL++EKK PLR +    K++M++ +   T  S   K SK +  +   +Y+ +
Sbjct: 110 FEKMMEDMNLNEEKKAPLRNKDFTTKREMVVQYISATAKSGGLKNSKHECTLSSQEYVHE 169

Query: 146 --PELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDS 203
               +S  K+ +C+ESLR++LT++P+SWVN F      +     +     +   + + ++
Sbjct: 170 LRSGISDEKLLNCLESLRVSLTSNPVSWVNNF-----GHEGLGLLLDELEKLLDKKQQEN 224

Query: 204 RYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCL 263
              + QY+ ++C++A MNN  GL+++ G + +L ++AR++DP +P +M E VK+L+A+C+
Sbjct: 225 IDKKNQYKLIQCLKAFMNNKFGLQRILGDERSLLLLARAIDPKQPNMMTEIVKILSAICI 284

Query: 264 IPPDG-HDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALR--TACLQLINAIVATPD 320
           +  +   DK++ AIT + E   +ERF P+V+GL    N EAL+   AC+Q INA+V +P 
Sbjct: 285 VGEENILDKLLGAITTAAERNNRERFSPIVEGL---ENQEALQLQVACMQFINALVTSPY 341

Query: 321 DLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRME 380
           +L+FR+HLRNE +R GL  +L  L++  ++++ +QLKVF E+KE+D  E   R +++R E
Sbjct: 342 ELDFRIHLRNEFLRSGLKTMLPDLKEKENDELDIQLKVFDENKEDDLTELSHRLNDIRAE 401

Query: 381 IDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFI 440
           +DD+N+ +  + NM+ D+A E Y LSILQH                           L I
Sbjct: 402 MDDMNEVYHLLYNMLKDTAAENYFLSILQH--------------------------FLLI 435

Query: 441 RDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEE-DR 499
           R+D Y+R  YYK++EECVSQIVLH  G DPDF+  +R  +D+  L++    K+K EE ++
Sbjct: 436 RNDYYIRPQYYKIIEECVSQIVLHCSGMDPDFKYRQRLDIDLTHLIDSCVNKAKVEESEQ 495

Query: 500 RVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSS 534
           +  + S K +E    RQEA+A+L +  + +++L +
Sbjct: 496 KAAEFSKKFDEEFTARQEAQAELQKRDEKIKELEA 530

Could be involved in oogenesis. Involved in the regulation of endosome dynamics. Implicated in a novel signal transduction pathway, in which isoform 3 and CSK are sequentially activated by RHOD to regulate the motility of early endosomes through interactions with the actin cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q9NSV4|DIAP3_HUMAN Protein diaphanous homolog 3 OS=Homo sapiens GN=DIAPH3 PE=1 SV=4

 Score =  293 bits (749), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 309/567 (54%), Gaps = 67/567 (11%)

Query: 17  LNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQENMLE 76
           LN   L     D    + +   KKE   R PL N K           ++   +  EN  +
Sbjct: 62  LNIRTLTDDMLDKFASIRIPGSKKE---RPPLPNLKTAF---ASSDCSAAPLEMMENFPK 115

Query: 77  KLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV--TSYENKSKFD 134
            L+  +L + FE M+ DMNL+++KK PLR +  + KK+M +M Y  T   T    +S+  
Sbjct: 116 PLSENELLELFEKMMEDMNLNEDKKAPLREKDFSIKKEM-VMQYINTASKTGSLKRSRQI 174

Query: 135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEF------VLQDNKNFRKYPI 188
            P E+I  L     +  ++ +C+ESLR++LT++P+SWV  F      +L D         
Sbjct: 175 SPQEFIHELKMGS-ADERLVTCLESLRVSLTSNPVSWVESFGHEGLGLLLD--------- 224

Query: 189 AFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKP 248
             +  +  S    +    + Q++ ++C++A+MN   GL+++  ++ +L+++A+++DP  P
Sbjct: 225 --ILEKLISGKIQEKVVKKNQHKVIQCLKALMNTQYGLERIMSEERSLSLLAKAVDPRHP 282

Query: 249 TVMLEAVKVLAAVCLIPPDG-HDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTA 307
            +M + VK+L+AVC++  +   ++V++A+T +GE K  +RF  +V+GL  + N+  L+ A
Sbjct: 283 NMMTDVVKLLSAVCIVGEESILEEVLEALTSAGEEKKIDRFFCIVEGL--RHNSVQLQVA 340

Query: 308 CLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDY 367
           C+QLINA+V +PDDL+FRLH+RNE MR GL ++L  L+   ++ + +QLKVF EHKEED 
Sbjct: 341 CMQLINALVTSPDDLDFRLHIRNEFMRCGLKEILPNLKCIKNDGLDIQLKVFDEHKEEDL 400

Query: 368 YEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACE 427
           +E   R +++R E+D+  D +  V + V ++  E Y +SILQH                 
Sbjct: 401 FELSHRLEDIRAELDEAYDVYNMVWSTVKETRAEGYFISILQH----------------- 443

Query: 428 PYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE 487
                    LL IR+D ++R  Y+KL++ECVSQIVLHR G DPDF   +R  LD+   V+
Sbjct: 444 ---------LLLIRNDYFIRQQYFKLIDECVSQIVLHRDGMDPDFTYRKRLDLDLTQFVD 494

Query: 488 HLAEKSKTEE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEV 546
              +++K EE + +  +L  K E+     QE +A+L + +  + +L +        L   
Sbjct: 495 ICIDQAKLEEFEEKASELYKKFEKEFTDHQETQAELQKKEAKINELQA-------ELQAF 547

Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMG 573
           K+Q  A +P       P PP   GG G
Sbjct: 548 KSQFGA-LPAD--CNIPLPPSKEGGTG 571

Binds to GTP-bound form of Rho and to profilin. Acts in a Rho-dependent manner to recruit profilin to the membrane, where it promotes actin polymerization. It is required for cytokinesis, stress fiber formation, and transcriptional activation of the serum response factor. DFR proteins couple Rho and Src tyrosine kinase during signaling and the regulation of actin dynamics.

Homo sapiens (taxid: 9606)

>sp|Q9Z207|DIAP3_MOUSE Protein diaphanous homolog 3 OS=Mus musculus GN=Diaph3 PE=1 SV=1

 Score =  278 bits (711), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 286/512 (55%), Gaps = 83/512 (16%)

Query: 87  FEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV--TSYENKSKFDKPIEYIQYLS 144
           FE M+ DMNL+++KK PLR +    KK+M+ M Y  T   T     S+   P E++  L 
Sbjct: 105 FEKMMEDMNLNEDKKAPLREKDFGIKKEMV-MQYINTASKTGSLRSSRQISPQEFLHELK 163

Query: 145 QPELSVNKMYSCIESLRIALTNHPLSWVNEF------VLQDNKNFRKYPIAFLYPRFPSR 198
               +  ++++ +ESLR++LT+HP+SWV  F      +L D           +  +  + 
Sbjct: 164 MG-YTDERLFTYLESLRVSLTSHPVSWVQSFGHEGLGLLLD-----------ILEKLING 211

Query: 199 SRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVL 258
              +    + Q++ ++C+RA+MN   GL+++   K +L+++A+++DP +P +M + VK+L
Sbjct: 212 QIQEKVVKKTQHKVIQCLRALMNTQYGLERIMSDKRSLSLLAKAMDPRQPAMMADVVKLL 271

Query: 259 AAVCLIPPDG-HDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVA 317
           +AVC++  +   ++V++A+T +GE +  +RF  +V+GL  + N+  L+ AC+QLINA+V 
Sbjct: 272 SAVCIVGEESILEEVLEALTSAGEERKIDRFFSIVEGL--RHNSVNLQVACMQLINALVT 329

Query: 318 TPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNV 377
           +PDDL+FRLHLRNE MR GL ++L  L+   ++ + +QLKVF EHKEED  EF  R +++
Sbjct: 330 SPDDLDFRLHLRNEFMRCGLKEILPNLKGIKNDGLDIQLKVFDEHKEEDLSEFFHRLEDI 389

Query: 378 RMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHL 437
           R E+D+ +D +    +M+ D+                      V ++  E + LSILQHL
Sbjct: 390 RAELDEASDVY----SMLWDT----------------------VKETRAEGHFLSILQHL 423

Query: 438 LFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEE 497
           L IR+D+++R  Y+KL++ECVSQIVLHR G DPDF   +R  LD+   V+   +++K +E
Sbjct: 424 LLIRNDRFIREQYFKLIDECVSQIVLHRDGTDPDFTYRKRLDLDLSQFVDVCIDQAKLDE 483

Query: 498 -DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPT 556
            + +  +   K E+     QE +A+L + +  + +L +        L   K+Q  A +P 
Sbjct: 484 WEEKASEHCKKFEKECTDHQETQAQLQKREAKINELQA-------ELQAFKSQFGA-LPP 535

Query: 557 GPK------------------------GGPPP 564
           G K                        GG PP
Sbjct: 536 GTKIPLQPSVEGEAGPSALPPAPPALSGGVPP 567

Binds to GTP-bound form of Rho and to profilin. Acts in a Rho-dependent manner to recruit profilin to the membrane, where it promotes actin polymerization. It is required for cytokinesis, stress fiber formation, and transcriptional activation of the serum response factor. DFR proteins couple Rho and Src tyrosine kinase during signaling and the regulation of actin dynamics.

Mus musculus (taxid: 10090)

>sp|Q80U19|DAAM2_MOUSE Disheveled-associated activator of morphogenesis 2 OS=Mus musculus GN=Daam2 PE=2 SV=4

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 229/501 (45%), Gaps = 67/501 (13%)

Query: 79  NPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIE 138
           NPE+LN +F +++++++L+D+ +E +   P   +KK  +   K       NK     P  
Sbjct: 44  NPEELNVRFAELVDELDLTDKNREAVFALP--PEKKWQIYCSKRKEQEDPNKLATSWPEY 101

Query: 139 YIQ-----------YLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYP 187
           YI            Y ++ E   +K    +E L+ AL   P+ +V  F+     +     
Sbjct: 102 YIDRINAMAAMQNLYETEDE-ETDKRNQVVEDLKTALRTQPMRFVTRFI-----DLEGLT 155

Query: 188 IAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNK 247
               + R    +  +SR   +    + CI+A+MNN+ G   +  Q EA++I+A+SL    
Sbjct: 156 CLLNFLRGMDHTTCESR---IHTSLIGCIKALMNNSQGRAHVLAQPEAISIIAQSLRTEN 212

Query: 248 PTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKG-KERFQPVVQGL---MVKGNNEA 303
               +  +++L AVCL+ P GH KV++A+         + RFQ ++  L   + +  +E 
Sbjct: 213 SKTKVAVLEILGAVCLV-PGGHKKVLQAMLHYQAYAAERTRFQTLLNELDRSLGRYRDEV 271

Query: 304 -LRTACLQLINAIV---ATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVF 359
            L+TA +  INA++   A  D+LEFRLHLR E + +G+  ++D L +  +  +   L  F
Sbjct: 272 NLKTAIMSFINAVLNAGAGEDNLEFRLHLRYEFLMLGIQPVIDKLRQHENAILDKHLDFF 331

Query: 360 IEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQN 419
              + ED  E  +RFD V ++    +  FE +   +  +   P LLS+L H L +     
Sbjct: 332 EMVRNEDDLELARRFDMVHIDTKSASQMFELIHKKLKHTEAYPCLLSVLHHCLQM----- 386

Query: 420 MVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLH-RGGCDPDFRSSRRF 478
                   PY           R+  Y +   ++LL+  + QIVL    G DPD      F
Sbjct: 387 --------PY----------KRNGGYFQ--QWQLLDRILQQIVLQDERGVDPDLAPLENF 426

Query: 479 QLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLR-----QEAEAKLVQAQ---KTLE 530
             +V+ +V  L  +++ ++ R   +   K    +M R     +E E K ++ +   +TL 
Sbjct: 427 --NVKNIVNMLINENEVKQWRDQAEKFRKEHMELMSRLERKERECETKTLEKEEMMRTLN 484

Query: 531 DLSSGRPVEKNRLDEVKAQVA 551
            +      E   L + + QVA
Sbjct: 485 KMKDKLARESQELRQARGQVA 505

Mus musculus (taxid: 10090)

>sp|Q9Y4D1|DAAM1_HUMAN Disheveled-associated activator of morphogenesis 1 OS=Homo sapiens GN=DAAM1 PE=1 SV=2

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 215/500 (43%), Gaps = 70/500 (14%)

Query: 81  EQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYI 140
           E+L+  F +++++++L+D+ +E +   P   K ++     K      ENK     P  YI
Sbjct: 51  EELDVMFSELVDELDLTDKHREAMFALPAEKKWQIYCSKKKD---QEENKGATSWPEFYI 107

Query: 141 ----------QYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAF 190
                       L+  +    +    IESL+ AL   P+ +V  F+  D  +        
Sbjct: 108 DQLNSMAARKSLLALEKEEEEERSKTIESLKTALRTKPMRFVTRFIDLDGLS-------- 159

Query: 191 LYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTV 250
               F      ++   R+    + CI+A+MNN+ G   +    E++ ++A+SL       
Sbjct: 160 CILNFLKTMDYETSESRIHTSLIGCIKALMNNSQGRAHVLAHSESINVIAQSLSTENIKT 219

Query: 251 MLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKG-KERFQPVVQGLMVKG----NNEALR 305
            +  +++L AVCL+ P GH KV++A+    +    + RFQ ++  L        +  +L+
Sbjct: 220 KVAVLEILGAVCLV-PGGHKKVLQAMLHYQKYASERTRFQTLINDLDKSTGRYRDEVSLK 278

Query: 306 TACLQLINAIV---ATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEH 362
           TA +  INA++   A  + L+FRLHLR E + +G+  ++D L +  +  +   L  F   
Sbjct: 279 TAIMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREHENSTLDRHLDFFEML 338

Query: 363 KEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVM 422
           + ED  EF +RF+ V ++       FE  R  +  S   P+ +SIL H L +        
Sbjct: 339 RNEDELEFAKRFELVHIDTKSATQMFELTRKRLTHSEAYPHFMSILHHCLQM-------- 390

Query: 423 DSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRG-GCDPDFRSSRRFQLD 481
                PY           R    V+  Y+ LL+  + QIV+    G DPD      F + 
Sbjct: 391 -----PY----------KRSGNTVQ--YWLLLDRIIQQIVIQNDKGQDPDSTPLENFNIK 433

Query: 482 --VQPLV--------EHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLED 531
             V+ LV        +  AEK + E +   + L  K  E     QE E    +  +TL  
Sbjct: 434 NVVRMLVNENEVKQWKEQAEKMRKEHNELQQKLEKKERECDAKTQEKE----EMMQTLNK 489

Query: 532 LSSGRPVEKNRLDEVKAQVA 551
           +      E     +VK QVA
Sbjct: 490 MKEKLEKETTEHKQVKQQVA 509

Binds to disheveled (Dvl) and Rho, and mediates Wnt-induced Dvl-Rho complex formation. May play a role as a scaffolding protein to recruit Rho-GDP and Rho-GEF, thereby enhancing Rho-GTP formation. Can direct nucleation and elongation of new actin filaments.

Homo sapiens (taxid: 9606)

>sp|Q54WH2|FORA_DICDI Formin-A OS=Dictyostelium discoideum GN=forA PE=1 SV=1

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 140/266 (52%), Gaps = 10/266 (3%)

Query: 595  TDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSST 654
            +D   +I N KQ  +E+K S+K+ K+LE+IL++GN++N G+  G A+GF++N +TKL+ T
Sbjct: 934  SDLKVDIDNFKQGTQEIKGSEKIPKLLEVILILGNFINGGTARGNAYGFKLNTITKLADT 993

Query: 655  KDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLE 714
            K  +NK +L++YL   + + FP    F  +L HV+ A RVS   +Q  +  +      ++
Sbjct: 994  KSTDNKLSLVNYLTRVVIKDFPHLNSFAQDLGHVEAAGRVSLSQVQAEVATLRKEFVQVQ 1053

Query: 715  TDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNI 774
              I+           D F    E F  +  + I L+++ S+ + T Y DL   +  D   
Sbjct: 1054 KSIETLNSGTGEEAVDPFKVKYEEFCTQTAEDIDLITSSSQQIETDYKDLLAMFGEDSK- 1112

Query: 775  YTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKKALID 834
                EFF     F D + +A +EN +L    EK  +    RE A+  K+++ A+KK L +
Sbjct: 1113 SEPSEFFGMFTKFMDQYDKATKENEQLSIQAEKIAK----REAAKKLKEEEDAKKKQLAE 1168

Query: 835  -----MTTDQTQQGVMDSLLEALQTG 855
                   T + ++ V+D LL+ + +G
Sbjct: 1169 ERKQKGETVEVKESVVDDLLDTIASG 1194

Formins play an important role in the nucleation of actin and the formation of linear actin filaments.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	927
307176412	1390	Protein diaphanous [Camponotus floridanu	0.466	0.310	0.592	1e-162
383865142	1090	PREDICTED: uncharacterized protein LOC10	0.487	0.414	0.570	1e-160
332025076	468	Protein diaphanous [Acromyrmex echinatio	0.466	0.923	0.594	1e-159
350419329	1061	PREDICTED: hypothetical protein LOC10074	0.468	0.409	0.582	1e-158
193671635	1089	PREDICTED: hypothetical protein LOC10016	0.471	0.401	0.591	1e-157
340708834	1095	PREDICTED: hypothetical protein LOC10064	0.468	0.396	0.580	1e-157
307207075	1669	Protein diaphanous [Harpegnathos saltato	0.468	0.260	0.570	1e-156
242015037	1051	diaphanous, putative [Pediculus humanus	0.463	0.409	0.583	1e-156
328791565	1089	PREDICTED: hypothetical protein LOC41219	0.524	0.446	0.521	1e-152
345492524	1383	PREDICTED: hypothetical protein LOC10011	0.466	0.312	0.573	1e-152

>gi|307176412|gb|EFN65986.1| Protein diaphanous [Camponotus floridanus]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/469 (59%), Positives = 360/469 (76%), Gaps = 37/469 (7%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTS 126
           E ++Q  ++E+++ E +N +FE+ML +MNL++EKKEPLR+Q  + KK+ML++HYKG++  
Sbjct: 96  EIEQQRCIIERMDEETVNDRFEEMLANMNLTEEKKEPLRQQSESKKKEMLVLHYKGSIQ- 154

Query: 127 YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKY 186
            EN+SKFDKP +YIQYL+QP+LSVNK+Y+CIESLRIALTN+PLSWV EF  +  K     
Sbjct: 155 -ENRSKFDKPADYIQYLAQPDLSVNKIYNCIESLRIALTNNPLSWVQEFGTKGLKQV--- 210

Query: 187 PIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPN 246
            +A L   +    RND+RY+R+QYEC+RC++AIMNNTVG+K+M    EALTIVARSL+P 
Sbjct: 211 -LATLNECY----RNDNRYERIQYECIRCLKAIMNNTVGIKEMLAHHEALTIVARSLEPT 265

Query: 247 KPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRT 306
           KP+VM EAVK+L AVCLI  D H KV+ AITM+GE KG+ERF P+VQGLM K  NE LR 
Sbjct: 266 KPSVMSEAVKLLGAVCLISSDSHKKVLDAITMNGEFKGRERFLPIVQGLMNK-KNENLRV 324

Query: 307 ACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEED 366
            CLQLIN+I+++ +DL+FRLHLRNE+MRVGL D+L+ LEKD SED++  LK+F +HKEED
Sbjct: 325 VCLQLINSIISSAEDLDFRLHLRNEVMRVGLADILEMLEKDESEDLATHLKIFNDHKEED 384

Query: 367 YYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSAC 426
           Y EF+QRFDNVR+E+DDVNDCFE V+NMVMD+  EPY LSILQHLLF             
Sbjct: 385 YEEFVQRFDNVRLELDDVNDCFEVVKNMVMDTTAEPYFLSILQHLLF------------- 431

Query: 427 EPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLV 486
                        IRDD  VR AYYKL+EEC+SQ+VLHR GCDPDF +++RFQ+DVQPL+
Sbjct: 432 -------------IRDDALVRTAYYKLIEECISQVVLHRSGCDPDFSATKRFQIDVQPLI 478

Query: 487 EHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSG 535
           + L EKS+ EE+RR+ +++ KLEEAI  RQEAEAKL  A+  +++L  G
Sbjct: 479 DTLVEKSRAEEERRLVEVTQKLEEAIASRQEAEAKLQHAENKIKELEQG 527

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865142|ref|XP_003708034.1| PREDICTED: uncharacterized protein LOC100883678 [Megachile rotundata]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/498 (57%), Positives = 370/498 (74%), Gaps = 46/498 (9%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTS 126
           E ++Q  ++E+++ E +N KFE+ML +MNL++EKKEPLR+Q    KK+ML++HYKG++  
Sbjct: 49  EIEQQRCIIERMDKETMNDKFEEMLANMNLTEEKKEPLRQQSETKKKEMLVLHYKGSIQ- 107

Query: 127 YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRK- 185
            EN+SKFDKP +YIQYL+QP+LSVNK+Y+C+ESLRIALTN+PLSWV EF  +  K     
Sbjct: 108 -ENRSKFDKPADYIQYLAQPDLSVNKIYNCVESLRIALTNNPLSWVQEFGTKGLKQVLAT 166

Query: 186 ----YPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVAR 241
               Y  AF+Y        +D+RY+R+QYEC+RC++AIMNNTVG+K+M   +EALTIVAR
Sbjct: 167 LNECYRNAFIY------YDSDNRYERIQYECIRCLKAIMNNTVGIKEMLAHQEALTIVAR 220

Query: 242 SLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNN 301
           SL+P KP+VM EAVK+L AVCLI  D H KV+ AITM+GE KG+ERF P+VQGLM K  N
Sbjct: 221 SLEPTKPSVMSEAVKLLGAVCLISSDSHKKVLDAITMNGEFKGRERFLPIVQGLMNK-KN 279

Query: 302 EALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIE 361
           E LR  CLQLIN+I+++ ++L+FRLHLRNEIMRVGL D+L+ LEKD SED++  LK+F +
Sbjct: 280 ENLRVECLQLINSIISSAEELDFRLHLRNEIMRVGLADILETLEKDESEDLARHLKIFSD 339

Query: 362 HKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMV 421
           HKEEDY EF+QRFD+VR+E+DDVNDCFE ++NMVM+++ EPY LSILQHLL         
Sbjct: 340 HKEEDYEEFVQRFDHVRLELDDVNDCFEVIKNMVMETSAEPYFLSILQHLL--------- 390

Query: 422 MDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                            F+RDD  VR AYYKL+EECVSQIVLHR GCDPDF +++RFQ+D
Sbjct: 391 -----------------FVRDDALVRPAYYKLIEECVSQIVLHRSGCDPDFSATKRFQID 433

Query: 482 VQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDL--SSGRPVE 539
           VQPL++ L EKS+ EE+RR+ ++S KLEEAI  +QEAEAKL  A+  + +L   SGR   
Sbjct: 434 VQPLIDTLVEKSRAEEERRLVEVSQKLEEAIARKQEAEAKLQHAENKIRELEQGSGRSGS 493

Query: 540 KNRLDEVKAQVAAGIPTG 557
            N    VK   +A I +G
Sbjct: 494 GN----VKGGTSAPIMSG 507

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025076|gb|EGI65259.1| Protein diaphanous [Acromyrmex echinatior]

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/469 (59%), Positives = 360/469 (76%), Gaps = 37/469 (7%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTS 126
           E ++Q  ++E+++ E +N KFE+ML +MNL++EKKEPLR+Q  + KK+ML++HYKG++  
Sbjct: 37  EIEQQRCIIERMDEETVNDKFEEMLANMNLTEEKKEPLRQQSESKKKEMLVLHYKGSIQ- 95

Query: 127 YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKY 186
            EN+SKFDKP +YIQYL+QP+LSVNK+Y+CIESLRIALTN+PLSWV EF  +  K     
Sbjct: 96  -ENRSKFDKPADYIQYLAQPDLSVNKIYNCIESLRIALTNNPLSWVQEFGTKGLKQV--- 151

Query: 187 PIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPN 246
            +A L   +    RND+RY+R+QYEC+RC++AIMNNTVG+K+M    EALTIVARSL+P 
Sbjct: 152 -LATLNECY----RNDNRYERIQYECIRCLKAIMNNTVGIKEMLAHHEALTIVARSLEPT 206

Query: 247 KPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRT 306
           KP+VM EAVK+L AVCLI  D H KV+ A+TM+GE KG+ERF P+VQGLM K  NE LR 
Sbjct: 207 KPSVMSEAVKLLGAVCLISIDSHKKVLDAVTMNGEFKGRERFLPIVQGLMNK-KNENLRV 265

Query: 307 ACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEED 366
            CLQLIN+I+++ +DL+FRLHLRNE+MRVGL D+L+ LEKD SED++  LK+F +HKEED
Sbjct: 266 VCLQLINSIISSAEDLDFRLHLRNEVMRVGLADILEMLEKDESEDLATHLKIFNDHKEED 325

Query: 367 YYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSAC 426
           Y EF+QRFDNVR+E+DDVNDCFE V+NMVMD++ EPY LSILQHLLF             
Sbjct: 326 YEEFVQRFDNVRLELDDVNDCFEVVKNMVMDTSAEPYFLSILQHLLF------------- 372

Query: 427 EPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLV 486
                        IRDD  VR AYYKL+EEC+SQIVLHR GCDPDF +++RFQ+DVQPL+
Sbjct: 373 -------------IRDDALVRPAYYKLIEECISQIVLHRSGCDPDFSATKRFQIDVQPLI 419

Query: 487 EHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSG 535
           + L EKS+ EE+RR+ ++  KLEEAI  RQEAEAKL  A+  +++L  G
Sbjct: 420 DILVEKSRAEEERRLVEVMQKLEEAIASRQEAEAKLQHAENKIKELEQG 468

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419329|ref|XP_003492145.1| PREDICTED: hypothetical protein LOC100741633 [Bombus impatiens]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 276/474 (58%), Positives = 359/474 (75%), Gaps = 40/474 (8%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTS 126
           E ++Q  M+E+++ E +N KFE+ML +MNL++EKKEPLR+Q    K++ML++HYKG++  
Sbjct: 49  EIEQQRCMIERMDKETVNDKFEEMLANMNLTEEKKEPLRQQSETKKREMLVLHYKGSIQ- 107

Query: 127 YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRK- 185
            EN+SKFDKP +YIQYL+QP+LSVNK+Y+CIESLRIALTN+PLSWV EF  +  K     
Sbjct: 108 -ENRSKFDKPADYIQYLAQPDLSVNKIYNCIESLRIALTNNPLSWVQEFGTKGLKQVLAT 166

Query: 186 ----YPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVAR 241
               Y  AF+Y        +D+RY+R+QYEC+RC++AIMNNTVG+K+M    EALTIVAR
Sbjct: 167 LNECYRNAFIY------YDSDNRYERIQYECIRCLKAIMNNTVGIKEMLAHHEALTIVAR 220

Query: 242 SLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNN 301
           SL+P KP+VM EAVK+L AVCLI  D H KV+ AITM+GE KG+ERF P+VQGLM K  N
Sbjct: 221 SLEPTKPSVMSEAVKLLGAVCLISSDSHKKVLDAITMNGEFKGRERFLPIVQGLMNK-KN 279

Query: 302 EALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIE 361
           E LR  CLQLIN+I+++ ++L+FRLHLRNEIMRVGL D+L+ LEK+ SED++  LK+F +
Sbjct: 280 ENLRVECLQLINSIISSAEELDFRLHLRNEIMRVGLADILETLEKNESEDLARHLKIFND 339

Query: 362 HKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMV 421
           HKEEDY EF+QRFD+VR+E+DDVNDCFE ++NMVM+++ EPY LSILQHLL         
Sbjct: 340 HKEEDYEEFVQRFDHVRLELDDVNDCFEVIKNMVMETSAEPYFLSILQHLL--------- 390

Query: 422 MDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                            F+RDD  VR AYYKL+EECVSQIVLHR GCDPDF +++RFQ+D
Sbjct: 391 -----------------FVRDDALVRPAYYKLIEECVSQIVLHRSGCDPDFSATKRFQID 433

Query: 482 VQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSG 535
           VQPL++ L EKS+ EE+RR+ ++S KLEEAI  +QEAEAKL  A+  + +L  G
Sbjct: 434 VQPLIDTLVEKSRAEEERRLVEVSQKLEEAIASKQEAEAKLQHAENKIRELEQG 487

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193671635|ref|XP_001943564.1| PREDICTED: hypothetical protein LOC100160854 [Acyrthosiphon pisum]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/470 (59%), Positives = 354/470 (75%), Gaps = 33/470 (7%)

Query: 72  ENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKS 131
           E  +E L+ E LN KFE+ML+DMNL++EKK P+R Q + NKKKML+MHYK + ++  NK 
Sbjct: 75  EMFVEHLDVEALNDKFEEMLDDMNLTEEKKTPIRDQSVVNKKKMLMMHYKKS-SNEGNKK 133

Query: 132 KFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFL 191
             DKP EYIQYLSQP+LS NK Y+C+ SLRIALTNHPLSWV+EF     +  R+  ++ L
Sbjct: 134 TCDKPTEYIQYLSQPDLSANKTYNCVVSLRIALTNHPLSWVSEF---GTEGLRQV-LSVL 189

Query: 192 YPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVM 251
              + +  +N +++ R+QYEC+RC++AIMN+TVGLKQMFG KEALT++ARSLD NKP VM
Sbjct: 190 NECYRNDGKN-AQFARIQYECIRCLKAIMNSTVGLKQMFGHKEALTVIARSLDINKPAVM 248

Query: 252 LEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQL 311
           LEAVKVLAAV LIPP+GH+K ++AITMS +++ + RF P+VQGL   GN EALR ACLQ 
Sbjct: 249 LEAVKVLAAVSLIPPNGHEKALEAITMSADIENRCRFLPIVQGLKTIGN-EALRVACLQF 307

Query: 312 INAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI 371
           INAIV+TP+DLEFR HLRNEIMR G+YD++D+LEKD SED+S QL +F  HKE+DY E +
Sbjct: 308 INAIVSTPEDLEFRGHLRNEIMRAGMYDVIDSLEKDCSEDLSRQLNIFNVHKEDDYEELV 367

Query: 372 QRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLL 431
           QRFDNVRM+ DDV DCF+ ++N+V DS  EPYLLSILQH LFI+DD +            
Sbjct: 368 QRFDNVRMDFDDVGDCFDVIKNIVADSPAEPYLLSILQHFLFIKDDVS------------ 415

Query: 432 SILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAE 491
                         +R A+YKL+EECVSQIVLHR GCDPDF +++RFQLDVQPL++ + E
Sbjct: 416 --------------IRPAFYKLIEECVSQIVLHRNGCDPDFHATKRFQLDVQPLIDTVVE 461

Query: 492 KSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKN 541
           KSK EEDRRVE+L  KLE A+  RQEAEAKL+QA+ T+++      +E N
Sbjct: 462 KSKAEEDRRVEELKDKLEHAVATRQEAEAKLIQAETTIKEFMLNSSMEIN 511

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708834|ref|XP_003393024.1| PREDICTED: hypothetical protein LOC100642832 [Bombus terrestris]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/474 (58%), Positives = 359/474 (75%), Gaps = 40/474 (8%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTS 126
           E ++Q  ++E+++ E +N KFE+ML +MNL++EKKEPLR+Q    K++ML++HYKG++  
Sbjct: 49  EIEQQRCIIERMDKETVNDKFEEMLANMNLTEEKKEPLRQQSETKKREMLVLHYKGSIQ- 107

Query: 127 YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRK- 185
            EN+SKFDKP +YIQYL+QP+LSVNK+Y+CIESLRIALTN+PLSWV EF  +  K     
Sbjct: 108 -ENRSKFDKPADYIQYLAQPDLSVNKIYNCIESLRIALTNNPLSWVQEFGTKGLKQVLAT 166

Query: 186 ----YPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVAR 241
               Y  AF+Y        +D+RY+R+QYEC+RC++AIMNNTVG+K+M    EALTIVAR
Sbjct: 167 LNECYRNAFIY------YDSDNRYERIQYECIRCLKAIMNNTVGIKEMLAHHEALTIVAR 220

Query: 242 SLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNN 301
           SL+P KP+VM EAVK+L AVCLI  D H KV+ AITM+GE KG+ERF P+VQGLM K  N
Sbjct: 221 SLEPTKPSVMSEAVKLLGAVCLISSDSHKKVLDAITMNGEFKGRERFLPIVQGLMNK-KN 279

Query: 302 EALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIE 361
           E LR  CLQLIN+I+++ ++L+FRLHLRNEIMRVGL D+L+ LEK+ SED++  LK+F +
Sbjct: 280 ENLRVECLQLINSIISSAEELDFRLHLRNEIMRVGLADILETLEKNESEDLARHLKIFND 339

Query: 362 HKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMV 421
           HKEEDY EF+QRFD+VR+E+DDVNDCFE ++NMVM+++ EPY LSILQHLL         
Sbjct: 340 HKEEDYEEFVQRFDHVRLELDDVNDCFEVIKNMVMETSAEPYFLSILQHLL--------- 390

Query: 422 MDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                            F+RDD  VR AYYKL+EECVSQIVLHR GCDPDF +++RFQ+D
Sbjct: 391 -----------------FVRDDALVRPAYYKLIEECVSQIVLHRSGCDPDFSATKRFQID 433

Query: 482 VQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSG 535
           VQPL++ L EKS+ EE+RR+ ++S KLEEAI  +QEAEAKL  A+  + +L  G
Sbjct: 434 VQPLIDTLVEKSRAEEERRLVEVSQKLEEAIASKQEAEAKLQHAENKIRELEQG 487

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207075|gb|EFN84884.1| Protein diaphanous [Harpegnathos saltator]

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/482 (57%), Positives = 363/482 (75%), Gaps = 48/482 (9%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDML--------NDMNLSDEKKEPLRRQPLANKKKMLLM 118
           E ++Q +++E+++ E +N KFE+ML         +MNL++EKKEPLR+Q  + KK+ML++
Sbjct: 119 EIEQQRSIIERMDEETVNDKFEEMLVSTVIDPQANMNLTEEKKEPLRQQSDSKKKEMLVL 178

Query: 119 HYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQ 178
           HYKG++   EN+SKFDKP +YIQYL+QP+LSVNK+YSCIESLRIALTN+PLSWV EF  +
Sbjct: 179 HYKGSIQ--ENRSKFDKPADYIQYLAQPDLSVNKIYSCIESLRIALTNNPLSWVQEFGTK 236

Query: 179 DNKNFRK-----YPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQK 233
             K         Y  AF+Y        +D+RY+R+QYEC+RC++AIMNNTVG+K+M    
Sbjct: 237 GLKQVLATLNECYRNAFIY------YDSDNRYERIQYECIRCLKAIMNNTVGIKEMLAHH 290

Query: 234 EALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQ 293
           EALTIVARSL+P KP+VM EAVK+L AVCLI  D H KV+ AITM+GE KG+ERF P+VQ
Sbjct: 291 EALTIVARSLEPTKPSVMSEAVKLLGAVCLISSDSHKKVLDAITMNGEFKGRERFLPIVQ 350

Query: 294 GLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVS 353
           GLM K  NE LR  CLQLIN+I+++ +DL+FRLHLRNE+MRVGL ++L+ LEKD SED++
Sbjct: 351 GLMNK-KNENLRVVCLQLINSIISSAEDLDFRLHLRNEVMRVGLANILETLEKDESEDLA 409

Query: 354 VQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLF 413
             LK+F +HKEEDY EF+QRFDNVR+E+DD+NDCFE ++++V+D++ EPYLLSI QHLLF
Sbjct: 410 THLKIFNDHKEEDYEEFVQRFDNVRLELDDMNDCFEVLKHIVLDTSAEPYLLSIFQHLLF 469

Query: 414 IRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFR 473
                                     IRDD  VR AYYKL+EEC+SQIVLHR GCDPDF 
Sbjct: 470 --------------------------IRDDVLVRPAYYKLIEECISQIVLHRSGCDPDFS 503

Query: 474 SSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLS 533
           +++RFQ+DVQPL+++L EKS+ EE+RR+ +++ KLEEAI  RQEAEAKL  A+  +++L 
Sbjct: 504 ATKRFQIDVQPLIDNLVEKSRAEEERRLMEITQKLEEAIASRQEAEAKLQHAENKIKELE 563

Query: 534 SG 535
            G
Sbjct: 564 QG 565

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015037|ref|XP_002428185.1| diaphanous, putative [Pediculus humanus corporis] gi|212512728|gb|EEB15447.1| diaphanous, putative [Pediculus humanus corporis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/468 (58%), Positives = 356/468 (76%), Gaps = 38/468 (8%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTS 126
           +N+ QE +L  ++  ++N+KFE+ML DMNLS+E+K+PLR   L NK+K+L+ H+K +V  
Sbjct: 41  DNELQEAILNTMDENKINEKFEEMLQDMNLSEERKQPLREMALMNKRKLLISHWKNSVQQ 100

Query: 127 YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKY 186
            +NKSKFDKP +YI +LS PELS+NK YSC+ESLRIALTN+PL+WV EFV +        
Sbjct: 101 -DNKSKFDKPSDYIAFLSTPELSLNKRYSCVESLRIALTNNPLTWVQEFVTEG------- 152

Query: 187 PIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPN 246
            +  L         ND R+++VQYEC+RC+RAIMNNT+G+K++FGQK A+T++ARSLD  
Sbjct: 153 -LQLLLGVLNECYLNDPRHEKVQYECLRCLRAIMNNTIGIKKVFGQKGAMTVLARSLDIT 211

Query: 247 KPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRT 306
           KP VM E V+VLAA C IPP GHDKV++AITMSGE+KGKERFQP+VQGL+ K NNE LR 
Sbjct: 212 KPKVMFEVVQVLAATCFIPPVGHDKVVEAITMSGEIKGKERFQPIVQGLLAK-NNENLRV 270

Query: 307 ACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEED 366
           ACL LINAIV   DDLE+RLHLRNEIMR GLYD+L+ LEKDA ED+ VQ+ VF EHKE D
Sbjct: 271 ACLTLINAIVTQTDDLEYRLHLRNEIMRAGLYDVLEDLEKDAPEDLIVQINVFNEHKETD 330

Query: 367 YYEFIQRFDN-VRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSA 425
           + E++++FD+ VR+E DDVN+CF+ ++N+VM+S  EPY LSILQHLLFIRDD        
Sbjct: 331 FAEWVEKFDSTVRLEFDDVNECFDMLKNLVMESPAEPYFLSILQHLLFIRDD-------- 382

Query: 426 CEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPL 485
                     HL        +R AYYKL+EECVSQIVLH+GGCDPDFR++RRFQ+DV PL
Sbjct: 383 ----------HL--------IRPAYYKLIEECVSQIVLHKGGCDPDFRANRRFQIDVAPL 424

Query: 486 VEHLAEK-SKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDL 532
           ++HL EK SK E+++++ DL  KLEEAI+ RQE+EA+ +Q +K L+++
Sbjct: 425 IDHLVEKESKAEDEKKLADLKNKLEEAILQRQESEARYLQLEKRLQEI 472

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791565|ref|XP_395654.4| PREDICTED: hypothetical protein LOC412191 [Apis mellifera]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/558 (52%), Positives = 380/558 (68%), Gaps = 72/558 (12%)

Query: 67  ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTS 126
           E ++Q  ++E+++ E  N KFE+ML +MNL++EKKEPLR+Q  A K++ML++HYKG++  
Sbjct: 49  EIEQQRCIIERMDKENSNDKFEEMLANMNLTEEKKEPLRQQSEAKKREMLVLHYKGSIQ- 107

Query: 127 YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRK- 185
            ENKSKFDKP +YIQYL+QP+LSVNK+Y+CIESLRIALTN+PLSWV EF  +  K     
Sbjct: 108 -ENKSKFDKPADYIQYLAQPDLSVNKIYNCIESLRIALTNNPLSWVQEFGTKGLKQVLAT 166

Query: 186 ----YPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVAR 241
               Y  AF+Y        +D+RY+R+QYEC+RC++AIMNNTVG+K+M   +EALTIVAR
Sbjct: 167 LNECYRNAFIY------YNSDNRYERIQYECIRCLKAIMNNTVGIKEMLAHQEALTIVAR 220

Query: 242 SLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNN 301
           SL+P KP+VM EAVK+L AVCLI  D H KV+ AITM+GE KG+ERF P+VQGLM K  N
Sbjct: 221 SLEPTKPSVMSEAVKLLGAVCLISSDSHKKVLDAITMNGEFKGRERFLPIVQGLMNK-KN 279

Query: 302 EALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIE 361
           E LR  CLQLIN+I+++ ++L+FRLHLRNEIMRVGL D+L+ LEK+ SED++  LK+F +
Sbjct: 280 ENLRVECLQLINSIISSAEELDFRLHLRNEIMRVGLADILETLEKNESEDLARHLKIFND 339

Query: 362 HKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMV 421
           HKEEDY EF+QRFD+VR+E+DDVNDCFE ++NMVM+++                      
Sbjct: 340 HKEEDYEEFVQRFDHVRLELDDVNDCFEVIKNMVMETSA--------------------- 378

Query: 422 MDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                EPY LSILQHLLF+RDD  VR AYYKL+EECVSQIVLHR GCDPDF +++RFQ+D
Sbjct: 379 -----EPYFLSILQHLLFVRDDALVRPAYYKLIEECVSQIVLHRSGCDPDFSATKRFQID 433

Query: 482 VQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKN 541
           VQPL++ L EKS+ EE+RR+ ++  KLEEAI  +QEAEAKL  A+  + +L  G     N
Sbjct: 434 VQPLIDTLVEKSRVEEERRLVEVLQKLEEAIASKQEAEAKLQHAENKIRELEQGGIKSTN 493

Query: 542 RLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMG---------------------------- 573
              ++ + ++     G    PPPP P   G                              
Sbjct: 494 GNAKIGSVLSGLAGIGNLPPPPPPLPNASGSAIIAPPPPPPPPLPGSSGLCPPPPPLPGL 553

Query: 574 ----PPPPPMPGMPGPPP 587
               PPPP    + GP P
Sbjct: 554 GGPPPPPPMPGTLAGPKP 571

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492524|ref|XP_003426869.1| PREDICTED: hypothetical protein LOC100115587 isoform 2 [Nasonia vitripennis]

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/471 (57%), Positives = 353/471 (74%), Gaps = 39/471 (8%)

Query: 67  ENKKQENMLEKLNPEQL-NQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVT 125
           E ++Q  M+E+++ E   N KFE++L +MNLS+EKKEPLR+Q    KK+ML++HYKG++ 
Sbjct: 38  EVEQQRCMIERMDEETTTNDKFEELLANMNLSEEKKEPLRQQSERKKKEMLILHYKGSIQ 97

Query: 126 SYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRK 185
             ++++KFDKP +YIQYLSQP+LS+NK+++CIESLRIALTN+PLSWV EF  +  K    
Sbjct: 98  --DSRNKFDKPADYIQYLSQPDLSINKIHTCIESLRIALTNNPLSWVQEFGTKGLKQV-- 153

Query: 186 YPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDP 245
             +  L   +    RNDSRY+R+QYEC+RC++AIMNNTVG+K++    EALTIVARSL+P
Sbjct: 154 --LVILNECY----RNDSRYERIQYECIRCLKAIMNNTVGIKEILAHHEALTIVARSLEP 207

Query: 246 NKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALR 305
           NKP+VM EAVK+L AVCLI  D H KV+ AITM+GE  G++RF P+VQGLM K  NE LR
Sbjct: 208 NKPSVMCEAVKLLGAVCLISSDSHKKVLDAITMNGEFNGRDRFLPIVQGLMNK-QNENLR 266

Query: 306 TACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALE-KDASEDVSVQLKVFIEHKE 364
             CLQLIN+I+++ ++L+FRLHLRNEIMR GL D+L+ LE +D SED+   LK+F ++K+
Sbjct: 267 VVCLQLINSIISSAEELDFRLHLRNEIMRAGLADILETLEGEDESEDLVRHLKIFNDYKD 326

Query: 365 EDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDS 424
           EDY EF+QRFD+VR+E+DDVNDCFE V+NMVM                          D+
Sbjct: 327 EDYEEFVQRFDHVRLELDDVNDCFEVVKNMVM--------------------------DT 360

Query: 425 ACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQP 484
             EPY LSILQHLLFIRDD  +R AYYKL+EECVSQIVLHR GCDPDF +++RFQ+DVQP
Sbjct: 361 VAEPYFLSILQHLLFIRDDALIRSAYYKLIEECVSQIVLHRSGCDPDFSATKRFQIDVQP 420

Query: 485 LVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSG 535
           L+E L EKSK E++ R+ ++S KLEEAI  +QEAEAKL  A+  + +L  G
Sbjct: 421 LIETLVEKSKAEDEHRLSEMSQKLEEAIARKQEAEAKLQHAENVIRELEKG 471

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	927
FB|FBgn0011202	1091	dia "diaphanous" [Drosophila m	0.362	0.307	0.430	8e-153
UNIPROTKB|E1BVL7	1091	DIAPH1 "Uncharacterized protei	0.497	0.422	0.348	4.1e-126
UNIPROTKB|O60879	1101	DIAPH2 "Protein diaphanous hom	0.528	0.445	0.329	2e-121
UNIPROTKB|K4DI95	1101	DIAPH2 "Diaphanous homolog 2 (	0.528	0.445	0.329	3.3e-121
UNIPROTKB|F1Q1Q1	1103	DIAPH2 "Uncharacterized protei	0.522	0.438	0.327	6.2e-120
UNIPROTKB|C9J6U3	1097	DIAPH2 "Protein diaphanous hom	0.510	0.431	0.325	2.7e-119
MGI|MGI:1858500	1098	Diap2 "diaphanous homolog 2 (D	0.453	0.382	0.334	1.7e-118
RGD|1310707	1218	Diaph1 "diaphanous homolog 1 (	0.380	0.289	0.367	2.4e-118
UNIPROTKB|A6NML8	1096	DIAPH2 "Protein diaphanous hom	0.528	0.447	0.329	2.6e-118
MGI|MGI:1194490	1255	Diap1 "diaphanous homolog 1 (D	0.550	0.406	0.296	2.1e-117

FB|FBgn0011202 dia "diaphanous" [Drosophila melanogaster (taxid:7227)]

 Score = 755 (270.8 bits), Expect = 8.0e-153, Sum P(3) = 8.0e-153
 Identities = 155/360 (43%), Positives = 235/360 (65%)

Query:    72 ENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENK- 130
             E  +++L+  +L+ KF +++ DMN+  +K+EPL  +    ++KM++ H KG   S E   
Sbjct:    56 EQYIQQLSVAELDAKFLEIIEDMNIPKDKREPLLAKSKEERQKMIMWHLKGK-NSLERSA 114

Query:   131 -SKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIA 189
              S+F+KPI+Y++YL   E S +K+Y C+ESLR+ALT++P+SW+ EF +       K  +A
Sbjct:   115 NSRFEKPIDYVEYLQNGEHSTHKVYQCVESLRVALTSNPISWIKEFGVAGIGTIEKL-LA 173

Query:   190 FLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFG--QKEALTIVARSLDPNK 247
                     RS+N++ Y+++++E +RC++AIMNNT GL  +    Q   + ++A+SLDP K
Sbjct:   174 --------RSKNNASYEKIEFEAIRCLKAIMNNTWGLNVVLNPDQHSVVLLLAQSLDPRK 225

Query:   248 PTVMLEAVKVLAAVCLI-PPDGHDKVIKAITM--SGELKGKERFQPVVQGLMVKGNNEAL 304
             P  M EA+K+LA+ C++   +G++KV++AIT   +   K  ERF+P+V  L      +  
Sbjct:   226 PQTMCEALKLLASFCIVYERNGYEKVLRAITTIAATSFKASERFRPIVDALFASDQQDPK 285

Query:   305 RT-ACLQLI--NAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK--DASEDVSVQ--LK 357
             R  AC  LI  N +  TP DL FRLHLR EIMR+GLYD LD   K  +AS + ++Q   K
Sbjct:   286 RDLACHSLIFINTLTNTPTDLNFRLHLRCEIMRMGLYDRLDEFTKIVEASNNENLQQHFK 345

Query:   358 VFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDD 417
             +F E +E+D+ EF+QRFDNV   +DD  DCF+ ++N+V D+  EPY LSILQHLL+IRDD
Sbjct:   346 IFNEIREDDFEEFVQRFDNVTFNMDDATDCFDVLKNLVTDTTSEPYFLSILQHLLYIRDD 405

GO:0007283 "spermatogenesis" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP;NAS;TAS

GO:0005826 "actomyosin contractile ring" evidence=NAS

GO:0007279 "pole cell formation" evidence=IMP

GO:0008104 "protein localization" evidence=NAS;IMP;TAS

GO:0007015 "actin filament organization" evidence=IMP

GO:0045448 "mitotic cell cycle, embryonic" evidence=IMP

GO:0007349 "cellularization" evidence=IMP;TAS

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0000915 "cytokinesis, actomyosin contractile ring assembly" evidence=IMP;NAS

GO:0030029 "actin filament-based process" evidence=TAS

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0007110 "cytokinesis after meiosis I" evidence=IMP

GO:0051225 "spindle assembly" evidence=IMP

GO:0007111 "cytokinesis after meiosis II" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0032507 "maintenance of protein location in cell" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0032154 "cleavage furrow" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0030589 "pseudocleavage involved in syncytial blastoderm formation" evidence=IMP

GO:0005884 "actin filament" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009306 "protein secretion" evidence=IMP

GO:0003383 "apical constriction" evidence=IMP

GO:0051489 "regulation of filopodium assembly" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

UNIPROTKB|E1BVL7 DIAPH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 773 (277.2 bits), Expect = 4.1e-126, Sum P(3) = 4.1e-126
 Identities = 178/511 (34%), Positives = 299/511 (58%)

Query:    45 RQPLANKKKMLLMHYKGTVTSY-ENKKQENMLEK----LNPEQLNQKFEDMLNDMNLSDE 99
             R+    K+K L+ H+  T     E    + +L++    L+ +++   FE M+ DMNL++E
Sbjct:    28 RKSTVRKEKPLIQHHVDTQPPISEIPLAQALLDERCMNLSEKEVMDLFEKMMEDMNLNEE 87

Query:   100 KKEPLRRQPLANKKKMLLMHYKGTVTSYENK--------SKFDKPIEYIQYLSQPELSV- 150
             +K PLR + L+ K++M++ +   T  S            SK +  +   +Y+ +    + 
Sbjct:    88 RKAPLREKDLSTKREMVVQYISATAKSIVGSKVPGGLKNSKHECTLSSQEYIHELRSGIA 147

Query:   151 -NKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQ 209
               K+ +C+ESLR++LT++P+SWVN F   +        +  L  +   R  N  + +  Q
Sbjct:   148 EEKLLNCLESLRVSLTSNPVSWVNNFG-HEGLGLLLDALERLLDKKHPRQENIDKKN--Q 204

Query:   210 YECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGH 269
             ++ ++C++A MNN  GL+++ G + +L +++R++DP +P +M E VK+L+A+C++  +  
Sbjct:   205 HKLIQCLKAFMNNKYGLQRILGDERSLLLLSRAIDPKQPHMMTETVKILSAICIVGEERI 264

Query:   270 -DKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALR----TACLQLINAIVATPDDLEF 324
              DKV+ AIT + E   +ERF PVV+GL    N+E L+     AC+Q INA+V +P++L+F
Sbjct:   265 LDKVLGAITTAAERNNRERFSPVVEGLE---NHEFLQLQQQVACMQFINALVTSPEELDF 321

Query:   325 RLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDV 384
             R+HLRNE +R GL  +L AL++  +E++ +QLKVF E KEED  E   R +++R+E++ +
Sbjct:   322 RIHLRNEFLRCGLKKILPALKEKENEELDIQLKVFDESKEEDLIELSHRLNDIRVEMNVL 381

Query:   385 NDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQ 444
              D  E                 + Q L       NM+ D++ E + LSILQH L IR+D 
Sbjct:   382 TDVNE-----------------VFQFLY------NMLKDTSSENHFLSILQHFLLIRNDY 418

Query:   445 YVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEE-DRRVED 503
             YVR  YYK++EECVSQIVLH  G DPDF    R  +D   L++   +K+K EE +++  +
Sbjct:   419 YVRPQYYKIIEECVSQIVLHTSGMDPDFSCRGRMDVDFSHLIDASVDKTKVEESEKKAAE 478

Query:   504 LSAKLEEAIMLRQEAEAKLVQAQKTLEDLSS 534
              S K +E  + RQEA+A L + ++ +++L +
Sbjct:   479 FSKKFDEEFIARQEAQAALQKREEKIKELET 509

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

UNIPROTKB|O60879 DIAPH2 "Protein diaphanous homolog 2" [Homo sapiens (taxid:9606)]

 Score = 680 (244.4 bits), Expect = 2.0e-121, Sum P(3) = 2.0e-121
 Identities = 174/528 (32%), Positives = 296/528 (56%)

Query:     8 EEQENMLEKLNPE--QLNQKFEDMLNDMNLSDEKKE-PLRRQPLANKKKMLLMHYKGTVT 64
             EE+     KLN +   L     D +     S  KKE PL + P+ ++  M    +     
Sbjct:    35 EEETKNKPKLNIQIKTLADDVRDRITSFRKSTVKKEKPLIQHPIDSQVAM--SEFPAAQP 92

Query:    65 SYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV 124
              Y+ +   N+ EK   E L+  FE M+ DMNL++EKK PLR +    K++M++ +   T 
Sbjct:    93 LYDERSL-NLSEK---EVLDL-FEKMMEDMNLNEEKKAPLRNKDFTTKREMVVQYISATA 147

Query:   125 TSYENK-SKFDKPI---EYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDN 180
              S   K SK +  +   EY+  L +  +S  K+ +C+ESLR++LT++P+SWVN F   + 
Sbjct:   148 KSGGLKNSKHECTLSSQEYVHEL-RSGISDEKLLNCLESLRVSLTSNPVSWVNNFG-HEG 205

Query:   181 KNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVA 240
                    +  L  +   +  N  + +  QY+ ++C++A MNN  GL+++ G + +L ++A
Sbjct:   206 LGLLLDELEKLLDK--KQQENIDKKN--QYKLIQCLKAFMNNKFGLQRILGDERSLLLLA 261

Query:   241 RSLDPNKPTVMLEAVKVLAAVCLIPPDGH-DKVIKAITMSGELKGKERFQPVVQGLMVKG 299
             R++DP +P +M E VK+L+A+C++  +   DK++ AIT + E   +ERF P+V+GL    
Sbjct:   262 RAIDPKQPNMMTEIVKILSAICIVGEENILDKLLGAITTAAERNNRERFSPIVEGLE--- 318

Query:   300 NNEALR--TACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLK 357
             N EAL+   AC+Q INA+V +P +L+FR+HLRNE +R GL  +L  L++  ++++ +QLK
Sbjct:   319 NQEALQLQVACMQFINALVTSPYELDFRIHLRNEFLRSGLKTMLPDLKEKENDELDIQLK 378

Query:   358 VFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDD 417
             VF E+KE+D  E   R +++R E+DD+N+ +  + NM+ D+A E Y LSILQH L IR+D
Sbjct:   379 VFDENKEDDLTELSHRLNDIRAEMDDMNEVYHLLYNMLKDTAAENYFLSILQHFLLIRND 438

Query:   418 QNMVMD--SACEPYLLSILQHLLFIRDD----QYVRLAYYKLLEECVSQIVLHRGGCDPD 471
               +        E  +  I+ H   +  D    Q + +    L++ CV++  +        
Sbjct:   439 YYIRPQYYKIIEECVSQIVLHCSGMDPDFKYRQRLDIDLTHLIDSCVNKAKVEESE-QKA 497

Query:   472 FRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAE 519
                S++F  +     E  AE  K +E  ++++L A++++   LR +A+
Sbjct:   498 AEFSKKFDEEFTARQEAQAELQKRDE--KIKELEAEIQQ---LRTQAQ 540

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005102 "receptor binding" evidence=TAS

GO:0007292 "female gamete generation" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|K4DI95 DIAPH2 "Diaphanous homolog 2 (Drosophila), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 680 (244.4 bits), Expect = 3.3e-121, Sum P(3) = 3.3e-121
 Identities = 174/528 (32%), Positives = 296/528 (56%)

Query:     8 EEQENMLEKLNPE--QLNQKFEDMLNDMNLSDEKKE-PLRRQPLANKKKMLLMHYKGTVT 64
             EE+     KLN +   L     D +     S  KKE PL + P+ ++  M    +     
Sbjct:    35 EEETKNKPKLNIQIKTLADDVRDRITSFRKSTVKKEKPLIQHPIDSQVAM--SEFPAAQP 92

Query:    65 SYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV 124
              Y+ +   N+ EK   E L+  FE M+ DMNL++EKK PLR +    K++M++ +   T 
Sbjct:    93 LYDERSL-NLSEK---EVLDL-FEKMMEDMNLNEEKKAPLRNKDFTTKREMVVQYISATA 147

Query:   125 TSYENK-SKFDKPI---EYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDN 180
              S   K SK +  +   EY+  L +  +S  K+ +C+ESLR++LT++P+SWVN F   + 
Sbjct:   148 KSGGLKNSKHECTLSSQEYVHEL-RSGISDEKLLNCLESLRVSLTSNPVSWVNNFG-HEG 205

Query:   181 KNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVA 240
                    +  L  +   +  N  + +  QY+ ++C++A MNN  GL+++ G + +L ++A
Sbjct:   206 LGLLLDELEKLLDK--KQQENIDKKN--QYKLIQCLKAFMNNKFGLQRILGDERSLLLLA 261

Query:   241 RSLDPNKPTVMLEAVKVLAAVCLIPPDGH-DKVIKAITMSGELKGKERFQPVVQGLMVKG 299
             R++DP +P +M E VK+L+A+C++  +   DK++ AIT + E   +ERF P+V+GL    
Sbjct:   262 RAIDPKQPNMMTEIVKILSAICIVGEENILDKLLGAITTAAERNNRERFSPIVEGLE--- 318

Query:   300 NNEALR--TACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLK 357
             N EAL+   AC+Q INA+V +P +L+FR+HLRNE +R GL  +L  L++  ++++ +QLK
Sbjct:   319 NQEALQLQVACMQFINALVTSPYELDFRIHLRNEFLRSGLKTMLPDLKEKENDELDIQLK 378

Query:   358 VFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDD 417
             VF E+KE+D  E   R +++R E+DD+N+ +  + NM+ D+A E Y LSILQH L IR+D
Sbjct:   379 VFDENKEDDLTELSHRLNDIRAEMDDMNEVYHLLYNMLKDTAAENYFLSILQHFLLIRND 438

Query:   418 QNMVMD--SACEPYLLSILQHLLFIRDD----QYVRLAYYKLLEECVSQIVLHRGGCDPD 471
               +        E  +  I+ H   +  D    Q + +    L++ CV++  +        
Sbjct:   439 YYIRPQYYKIIEECVSQIVLHCSGMDPDFKYRQRLDIDLTHLIDSCVNKAKVEESE-QKA 497

Query:   472 FRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAE 519
                S++F  +     E  AE  K +E  ++++L A++++   LR +A+
Sbjct:   498 AEFSKKFDEEFTARQEAQAELQKRDE--KIKELEAEIQQ---LRTQAQ 540

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

UNIPROTKB|F1Q1Q1 DIAPH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 690 (248.0 bits), Expect = 6.2e-120, Sum P(3) = 6.2e-120
 Identities = 170/519 (32%), Positives = 295/519 (56%)

Query:     8 EEQENMLEKLNPE--QLNQKFEDMLNDMNLSDEKKE-PLRRQPLANKKKMLLMHYKGTVT 64
             EE+     KLN +   L     D +     S  KKE PL + P+ ++  M    +     
Sbjct:    35 EEETKNKPKLNIQIKTLADDVRDRITSFRKSTVKKEKPLIQHPIDSQVAM--SEFPAAQP 92

Query:    65 SYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV 124
              Y+ +   N+ EK   E L+  FE M+ DMNL++E+K PLR +    K++M++ +   T 
Sbjct:    93 LYDERSL-NLSEK---EVLDL-FEKMMEDMNLNEERKAPLRNKDFTTKREMVVQYISATA 147

Query:   125 TSYENK-SKFDKPI---EYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDN 180
              S   K SK +  +   EY+  L +  +S  K+ +C+ESLR++LT++P+SWVN F   + 
Sbjct:   148 KSGGLKNSKHECTLSSQEYVHEL-RSGISDEKLLNCLESLRVSLTSNPVSWVNNFG-HEG 205

Query:   181 KNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVA 240
                    +  +  +   + + ++   + QY+ ++C++A MNN  GL+++ G + +L ++A
Sbjct:   206 LGL----LLDVLEKLLDKKQQENIDKKNQYKLIQCLKAFMNNKFGLQRILGDERSLLLLA 261

Query:   241 RSLDPNKPTVMLEAVKVLAAVCLIPPDGH-DKVIKAITMSGELKGKERFQPVVQGLMVKG 299
             R++DP +P +M E VK+L+A+C++  +   DK++ AIT++ E   KERF P+V+GL    
Sbjct:   262 RAIDPKQPNMMTEIVKILSAICIVGEENILDKLLGAITIAAERNNKERFSPIVEGLE--- 318

Query:   300 NNEALR--TACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLK 357
             N+EAL+   AC+Q INA+V +P +L+FR+HLRNE +R GL  +L  L++  ++++ +QLK
Sbjct:   319 NHEALQLQVACMQFINALVTSPYELDFRIHLRNEFLRSGLKTMLPDLKEKENDELDIQLK 378

Query:   358 VFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDD 417
             VF E+KE+D  E   R  ++R E+DD+N+ +  + NM+ D+A E YLLSILQH L IR+D
Sbjct:   379 VFDENKEDDLTELSHRLSDIRAEMDDMNEVYHLLYNMLKDTAAENYLLSILQHFLLIRND 438

Query:   418 QNMVMD--SACEPYLLSILQHLLFIRDD----QYVRLAYYKLLEECVSQIVLHRGGCDPD 471
               +        E  +  I+ H   +  D    Q + + +  L++ CV++  +        
Sbjct:   439 YYIRPQYYKIIEECISQIVLHCSGMDPDFKYRQRLDIDFTHLIDSCVNKAKVEESE-QKA 497

Query:   472 FRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEE 510
                S++F  +     E  AE  K EE  ++++L +++++
Sbjct:   498 AEFSKKFDEEFTARQEAQAELQKREE--KIKELESEIQQ 534

GO:0030041 "actin filament polymerization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

UNIPROTKB|C9J6U3 DIAPH2 "Protein diaphanous homolog 2" [Homo sapiens (taxid:9606)]

 Score = 663 (238.4 bits), Expect = 2.7e-119, Sum P(3) = 2.7e-119
 Identities = 168/516 (32%), Positives = 289/516 (56%)

Query:    25 KFEDMLNDMNLSDEKKE-PLRRQPLANKKKMLLMHYKGTVTSYENKKQENMLEKLNPEQL 83
             K  D +     S  KKE PL + P+ ++  M    +      Y+ +   N+ EK   E L
Sbjct:    43 KLRDRITSFRKSTVKKEKPLIQHPIDSQVAM--SEFPAAQPLYDERSL-NLSEK---EVL 96

Query:    84 NQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENK--------SKFDK 135
             +  FE M+ DMNL++EKK PLR +    K++M++ +   T  S  +         SK + 
Sbjct:    97 DL-FEKMMEDMNLNEEKKAPLRNKDFTTKREMVVQYISATAKSVISSHIKGGLKNSKHEC 155

Query:   136 PI---EYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLY 192
              +   EY+  L +  +S  K+ +C+ESLR++LT++P+SWVN F   +        +  L 
Sbjct:   156 TLSSQEYVHEL-RSGISDEKLLNCLESLRVSLTSNPVSWVNNFG-HEGLGLLLDELEKLL 213

Query:   193 PRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVML 252
              +   +  N  + +  QY+ ++C++A MNN  GL+++ G + +L ++AR++DP +P +M 
Sbjct:   214 DK--KQQENIDKKN--QYKLIQCLKAFMNNKFGLQRILGDERSLLLLARAIDPKQPNMMT 269

Query:   253 EAVKVLAAVCLIPPDGH-DKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALR--TACL 309
             E VK+L+A+C++  +   DK++ AIT + E   +ERF P+V+GL    N EAL+   AC+
Sbjct:   270 EIVKILSAICIVGEENILDKLLGAITTAAERNNRERFSPIVEGLE---NQEALQLQVACM 326

Query:   310 QLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYE 369
             Q INA+V +P +L+FR+HLRNE +R GL  +L  L++  ++++ +QLKVF E+KE+D  E
Sbjct:   327 QFINALVTSPYELDFRIHLRNEFLRSGLKTMLPDLKEKENDELDIQLKVFDENKEDDLTE 386

Query:   370 FIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMD--SACE 427
                R +++R E+DD+N+ +  + NM+ D+A E Y LSILQH L IR+D  +        E
Sbjct:   387 LSHRLNDIRAEMDDMNEVYHLLYNMLKDTAAENYFLSILQHFLLIRNDYYIRPQYYKIIE 446

Query:   428 PYLLSILQHLLFIRDD----QYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQ 483
               +  I+ H   +  D    Q + +    L++ CV++  +           S++F  +  
Sbjct:   447 ECVSQIVLHCSGMDPDFKYRQRLDIDLTHLIDSCVNKAKVEESE-QKAAEFSKKFDEEFT 505

Query:   484 PLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAE 519
                E  AE  K +E  ++++L A++++   LR +A+
Sbjct:   506 ARQEAQAELQKRDE--KIKELEAEIQQ---LRTQAQ 536

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1858500 Diap2 "diaphanous homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 669 (240.6 bits), Expect = 1.7e-118, Sum P(3) = 1.7e-118
 Identities = 152/454 (33%), Positives = 265/454 (58%)

Query:    78 LNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSY---------- 127
             L+ +++   FE M+ DMNL++EKK PLR++  + K++M++ +   T  S           
Sbjct:    93 LSEKEVLDLFEKMMEDMNLNEEKKAPLRKKDFSIKREMVVQYISATSKSIVGSKVLGGLK 152

Query:   128 ENKSKFD-KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKY 186
              +K +F     EY+  L +  +S  K+ +C+ESLR++LT+HP+SWVN F       +   
Sbjct:   153 NSKHEFTLSSQEYVHEL-RSGISDEKLLNCLESLRVSLTSHPVSWVNNF------GYEGL 205

Query:   187 PIAF-LYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDP 245
              +   +  +   + + ++   + QY+ ++C++A MNN  GL+++ G + +L ++AR++DP
Sbjct:   206 GVLLDVLEKLLDKKQQENIDKKNQYKVIQCLKAFMNNKFGLQRILGDERSLLLLARAIDP 265

Query:   246 NKPTVMLEAVKVLAAVCLIPPDGH-DKVIKAITMSGELKGKERFQPVVQGLMVKGNNEAL 304
              +  +M E VK+L+A+C++  +   DK++  IT + EL  +ERF P+V+GL    NNEAL
Sbjct:   266 KQQNMMTEIVKILSAICIVGEENILDKLLGGITAAAELNNRERFSPIVEGLE---NNEAL 322

Query:   305 --RTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEH 362
               + AC+Q INA+V +P DL+FR+HLRNE +R GL  +L  L++  +E + +QL+VF E+
Sbjct:   323 HLQVACMQFINALVTSPYDLDFRIHLRNEFLRCGLKAMLPTLKEIENEGLDIQLRVFEEN 382

Query:   363 KEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVM 422
             KE+D  E   R +++R E+DD+N+ +  + NM+ D+A EPYLLSILQH L IR+D  +  
Sbjct:   383 KEDDLSELSHRLNDIRAEMDDINEVYHLLYNMLKDTAAEPYLLSILQHFLLIRNDYYIRP 442

Query:   423 D--SACEPYLLSILQHLLFIRDD----QYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSR 476
                   E  +  I+ H   +  D    Q +   +  LL+ CV++  +           S+
Sbjct:   443 QYYKIIEECVSQIVLHCSGMDPDFKYRQRIDFDFTHLLDACVNKAKVEENE-QKAMEFSK 501

Query:   477 RFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEE 510
             +F  +     E  AE  K +E  ++++L  ++++
Sbjct:   502 KFDEEFTARQEAQAELQKRDE--KIKELETEIQQ 533

GO:0003779 "actin binding" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016043 "cellular component organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0030154 "cell differentiation" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

RGD|1310707 Diaph1 "diaphanous homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 661 (237.7 bits), Expect = 2.4e-118, Sum P(3) = 2.4e-118
 Identities = 133/362 (36%), Positives = 225/362 (62%)

Query:    59 YKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLM 118
             ++ +  SY +      L+ ++ +Q+   FE ML DMNL++EK++PLR + +  K++M+  
Sbjct:    20 HRNSSASYGDDPTAQSLQDISDDQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQ 79

Query:   119 HYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQ 178
             +   +      K      + YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +
Sbjct:    80 YLHTSKAGMNQKESSRSAMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAE 138

Query:   179 DNKNFRKYPIAFLYPRFPSRSRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALT 237
                +     +  L      +      YD R Q+E +RC++A MNN  G+K M   +E + 
Sbjct:   139 GLASL----LDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 194

Query:   238 IVARSLDPNKPTVMLEAVKVLAAVCLIP-P-DGHDKVIKAITMSGELKGKERFQPVVQGL 295
             ++ R++DP  P +M++A K+L+A+C++P P D +++V++A+T   E++  ERFQP++ GL
Sbjct:   195 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMEEVERFQPLLDGL 254

Query:   296 MVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQ 355
                G + AL+  CLQLINA++   ++L+FR+H+R+E+MR+GL+ +L  L +  ++D+ VQ
Sbjct:   255 K-SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIDNDDMRVQ 313

Query:   356 LKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIR 415
             L VF E  +ED+++   R D++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R
Sbjct:   314 LNVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVR 373

Query:   416 DD 417
             +D
Sbjct:   374 ND 375

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA;ISO

GO:0005522 "profilin binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0007010 "cytoskeleton organization" evidence=ISO

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0017048 "Rho GTPase binding" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO

GO:0030041 "actin filament polymerization" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0031175 "neuron projection development" evidence=ISO

GO:0032587 "ruffle membrane" evidence=ISO

GO:0032886 "regulation of microtubule-based process" evidence=ISO

GO:0035372 "protein localization to microtubule" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0071420 "cellular response to histamine" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

UNIPROTKB|A6NML8 DIAPH2 "Protein diaphanous homolog 2" [Homo sapiens (taxid:9606)]

 Score = 680 (244.4 bits), Expect = 2.6e-118, Sum P(3) = 2.6e-118
 Identities = 174/528 (32%), Positives = 296/528 (56%)

Query:     8 EEQENMLEKLNPE--QLNQKFEDMLNDMNLSDEKKE-PLRRQPLANKKKMLLMHYKGTVT 64
             EE+     KLN +   L     D +     S  KKE PL + P+ ++  M    +     
Sbjct:    35 EEETKNKPKLNIQIKTLADDVRDRITSFRKSTVKKEKPLIQHPIDSQVAM--SEFPAAQP 92

Query:    65 SYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV 124
              Y+ +   N+ EK   E L+  FE M+ DMNL++EKK PLR +    K++M++ +   T 
Sbjct:    93 LYDERSL-NLSEK---EVLDL-FEKMMEDMNLNEEKKAPLRNKDFTTKREMVVQYISATA 147

Query:   125 TSYENK-SKFDKPI---EYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDN 180
              S   K SK +  +   EY+  L +  +S  K+ +C+ESLR++LT++P+SWVN F   + 
Sbjct:   148 KSGGLKNSKHECTLSSQEYVHEL-RSGISDEKLLNCLESLRVSLTSNPVSWVNNFG-HEG 205

Query:   181 KNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVA 240
                    +  L  +   +  N  + +  QY+ ++C++A MNN  GL+++ G + +L ++A
Sbjct:   206 LGLLLDELEKLLDK--KQQENIDKKN--QYKLIQCLKAFMNNKFGLQRILGDERSLLLLA 261

Query:   241 RSLDPNKPTVMLEAVKVLAAVCLIPPDGH-DKVIKAITMSGELKGKERFQPVVQGLMVKG 299
             R++DP +P +M E VK+L+A+C++  +   DK++ AIT + E   +ERF P+V+GL    
Sbjct:   262 RAIDPKQPNMMTEIVKILSAICIVGEENILDKLLGAITTAAERNNRERFSPIVEGLE--- 318

Query:   300 NNEALR--TACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLK 357
             N EAL+   AC+Q INA+V +P +L+FR+HLRNE +R GL  +L  L++  ++++ +QLK
Sbjct:   319 NQEALQLQVACMQFINALVTSPYELDFRIHLRNEFLRSGLKTMLPDLKEKENDELDIQLK 378

Query:   358 VFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDD 417
             VF E+KE+D  E   R +++R E+DD+N+ +  + NM+ D+A E Y LSILQH L IR+D
Sbjct:   379 VFDENKEDDLTELSHRLNDIRAEMDDMNEVYHLLYNMLKDTAAENYFLSILQHFLLIRND 438

Query:   418 QNMVMD--SACEPYLLSILQHLLFIRDD----QYVRLAYYKLLEECVSQIVLHRGGCDPD 471
               +        E  +  I+ H   +  D    Q + +    L++ CV++  +        
Sbjct:   439 YYIRPQYYKIIEECVSQIVLHCSGMDPDFKYRQRLDIDLTHLIDSCVNKAKVEESE-QKA 497

Query:   472 FRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAE 519
                S++F  +     E  AE  K +E  ++++L A++++   LR +A+
Sbjct:   498 AEFSKKFDEEFTARQEAQAELQKRDE--KIKELEAEIQQ---LRTQAQ 540

GO:0003779 "actin binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1194490 Diap1 "diaphanous homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 672 (241.6 bits), Expect = 2.1e-117, Sum P(2) = 2.1e-117
 Identities = 160/540 (29%), Positives = 291/540 (53%)

Query:    23 NQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQENMLEKLNPEQ 82
             ++KF +    M +  EK++P       N        ++ +  SY +      L+ ++ EQ
Sbjct:    36 HKKFLERFTSMRIKKEKEKP-------NSA------HRNSSASYGDDPTAQSLQDISDEQ 82

Query:    83 LNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQY 142
             +   FE ML DMNL++EK++PLR + +  K++M+  +   +      K      + YIQ 
Sbjct:    83 VLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSRSAMMYIQE 142

Query:   143 LSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRND 202
             L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L      +    
Sbjct:   143 L-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEKEETS 197

Query:   203 SRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAV 261
               YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A K+L+A+
Sbjct:   198 GNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSAL 257

Query:   262 CLIP-P-DGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATP 319
             C++P P D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLINA++   
Sbjct:   258 CILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINALITPA 316

Query:   320 DDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRM 379
             ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++   R D++RM
Sbjct:   317 EELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRM 376

Query:   380 EIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMD--SACEPYLLSILQHL 437
             E+DD  + F+ + N V DS  EP+ LSILQHLL +R+D           E  +  I+ H 
Sbjct:   377 EMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHK 436

Query:   438 LFIRDD---QYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSK 494
                  D   +++++   +L+++ + +  + +          ++   ++    E   E  K
Sbjct:   437 NGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEAKAT-ELEKKLDSELTARHELQVEMKK 495

Query:   495 TEED--RRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAA 552
              E D  ++++DL  + +     +Q+  A+    +  +  L+         L++ K ++A+
Sbjct:   496 MENDFEQKLQDLQGEKDALDSEKQQITAQKQDLEAEVSKLTGEVAKLSKELEDAKNEMAS 555

GO:0003779 "actin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005522 "profilin binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016043 "cellular component organization" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IDA

GO:0030041 "actin filament polymerization" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0031175 "neuron projection development" evidence=IDA

GO:0032587 "ruffle membrane" evidence=IDA

GO:0032886 "regulation of microtubule-based process" evidence=ISO

GO:0035372 "protein localization to microtubule" evidence=ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO;IPI

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0071420 "cellular response to histamine" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	927
pfam02181	372	pfam02181, FH2, Formin Homology 2 Domain	7e-58
pfam06367	197	pfam06367, Drf_FH3, Diaphanous FH3 Domain	3e-55
smart00498	392	smart00498, FH2, Formin Homology 2 Domain	9e-49
pfam06371	187	pfam06371, Drf_GBD, Diaphanous GTPase-binding Doma	6e-38
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	5e-11
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-10
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	5e-10
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	9e-10
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-09
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-09
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-09
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	6e-09
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	8e-09
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	8e-08
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-07
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	2e-06
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	2e-06
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	3e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-06
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	2e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-05
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	4e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-05
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	7e-05
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	8e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	2e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	2e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	2e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	4e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	4e-04
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	4e-04
pfam12446	133	pfam12446, DUF3682, Protein of unknown function (D	4e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	5e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	5e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	6e-04
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	7e-04
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	8e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	0.001
pfam04487	206	pfam04487, CITED, CITED	0.001
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
pfam04959	211	pfam04959, ARS2, Arsenite-resistance protein 2	0.002
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.002
pfam11029	136	pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
pfam12316	202	pfam12316, Dsh_C, Segment polarity protein disheve	0.003
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.004

>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain

 Score =  203 bits (518), Expect = 7e-58
 Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 2/201 (0%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
            E   +   ++   + A EE+++S+K  K+LELIL +GNYMNSG+R G A GF+++ L K
Sbjct: 173 EEEVEELKPSLETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLK 232

Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
           LS TK  +NKTTLLHYLV  I +K P+ L F  EL HV++AA+V  + ++  ++++E  +
Sbjct: 233 LSDTKSTDNKTTLLHYLVKIIREKLPDLLDFSSELSHVEKAAKVDLEQLEKDVKELEKGL 292

Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
           K LE +++        + +DKF+E M+ F +E  +K+  L ++ K  M L+ +L E++  
Sbjct: 293 KKLERELELSALDE--HPDDKFVEKMKEFLEEAEEKLDKLESLLKEAMELFKELTEYFGE 350

Query: 771 DKNIYTLEEFFTDIKTFKDSF 791
           D    + EEFF  ++ F   F
Sbjct: 351 DPKETSPEEFFKILRDFLRMF 371

Length = 372

>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain

 Score =  189 bits (482), Expect = 3e-55
 Identities = 88/223 (39%), Positives = 129/223 (57%), Gaps = 28/223 (12%)

Query: 267 DGHDKVIKAITMSGEL-KGKERFQPVVQGLMVKGN-NEALRTACLQLINAIVATPDDLEF 324
            GH+KV++A     E+ + + RF+ +V  L    N N   + A +Q INA+V +P+DL F
Sbjct: 1   GGHEKVLEATLNFKEVCRERGRFRSLVGALDSSENDNVEYKVATMQFINALVNSPEDLNF 60

Query: 325 RLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDV 384
           RLHLR+E  R+GL  +LD L +  +E +  QL++F E++EED  E ++RFD+V +++DD 
Sbjct: 61  RLHLRSEFTRLGLDRILDKLRELENEKLDDQLQIFEENREEDVEELLERFDDVNVDLDDP 120

Query: 385 NDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQ 444
            + FE ++                          N V D+  EP+ LSILQHLL IRDD+
Sbjct: 121 VELFELLK--------------------------NKVKDTEAEPHFLSILQHLLLIRDDE 154

Query: 445 YVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE 487
                Y+KLLEE VSQIVLHR   DPDF   +   +D+  L++
Sbjct: 155 EELPQYWKLLEELVSQIVLHRTKPDPDFDERKNLNIDINRLLD 197

This region is found in the Formin-like and and diaphanous proteins. Length = 197

>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain

 Score =  177 bits (452), Expect = 9e-49
 Identities = 88/264 (33%), Positives = 127/264 (48%), Gaps = 45/264 (17%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
            E   D    I   + ACEE+++SKK  K+LELIL +GNYMN GSR G A+GF+++ L K
Sbjct: 173 EEEVEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLK 232

Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
           LS  K  +NKTTLLH+LV  I +K+                                  +
Sbjct: 233 LSDVKSADNKTTLLHFLVKIIRKKY----------------------------------L 258

Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
             L             N +DKF+E+M+PF K  ++K   L     ++ T +  L E+Y  
Sbjct: 259 GGLS---------DPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGE 309

Query: 771 DKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEK-KDKAARK 829
           D    + EEFF D   F   F +A +ENIK  E EE+  + +  +E  E E+   +   +
Sbjct: 310 DPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRK-KLVKETTEYEQSSSRQKER 368

Query: 830 KALIDMTTDQTQQGVMDSLLEALQ 853
              +D   ++   GV+DSLLE L 
Sbjct: 369 NPSMDFEVERDFLGVLDSLLEELG 392

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain. Length = 392

>gnl|CDD|219001 pfam06371, Drf_GBD, Diaphanous GTPase-binding Domain

 Score =  140 bits (354), Expect = 6e-38
 Identities = 55/195 (28%), Positives = 102/195 (52%), Gaps = 14/195 (7%)

Query: 75  LEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGT------VTSYE 128
           L+K + +++ + FE+++ +MNL +EK+ P+R +P+  K ++++ +            S  
Sbjct: 1   LQKPDDDEILKLFEELMEEMNLPEEKRRPMRAKPIEKKWQLVVQYLLTNFQGESLSKSLS 60

Query: 129 NKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPI 188
             ++   P  Y++ L    +       C+ESLR+AL   P+SWV  F+  +  +     I
Sbjct: 61  KSNETGSPEYYVKKLKDGSIDQK----CLESLRVALRTQPVSWVKRFIGAEGLS-ALLNI 115

Query: 189 AFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKP 248
                R  S S  D      +YE ++C++A+MNN  G+  + G  E + ++ARSLD  +P
Sbjct: 116 LSKIVRKKSESDEDLD---REYEILKCLKALMNNKFGIDHVLGHPEVILLLARSLDSPRP 172

Query: 249 TVMLEAVKVLAAVCL 263
                A+++L A+CL
Sbjct: 173 KTRKLALELLTALCL 187

This domain is bound to by GTP-attached Rho proteins, leading to activation of the Drf protein. Length = 187

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 61.5 bits (149), Expect = 5e-11
 Identities = 31/49 (63%), Positives = 32/49 (65%), Gaps = 8/49 (16%)

Query: 551 AAGIPTGP-----KGGPPPPPPPPGGMG-PPPPPMPGMPG--PPPPPMP 591
           AAGIP  P      G PPPPPP PGG   PPPPP+PG PG  PPPPP P
Sbjct: 81  AAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFP 129

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 29/51 (56%), Positives = 29/51 (56%), Gaps = 8/51 (15%)

Query: 551 AAGIPTGPKGGP-----PPPPPPPGGMG--PPPPPMPGMPG-PPPPPMPEM 593
            AGIP  P   P     PPPPP PGG G  PPPPP PG PG PPPPP    
Sbjct: 93  GAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPGMGS 143

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 58.8 bits (142), Expect = 5e-10
 Identities = 25/44 (56%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 554 IPTGPKGGPPPPPPPPGGMG-PPPPPMPGMPGPPP-----PPMP 591
           +P GP G PPPPPP PG  G PPPPP  G P PPP     P  P
Sbjct: 115 LPGGP-GVPPPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAAP 157

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 27/48 (56%), Positives = 29/48 (60%), Gaps = 7/48 (14%)

Query: 551 AAGIPTGP----KGGPPPPPPPPGGMG--PPPPPMPGMPG-PPPPPMP 591
           A  IP  P      G PPPPP PGG G  PPPPP+PG    PPPPP+P
Sbjct: 69  ATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLP 116

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 26/46 (56%), Positives = 28/46 (60%), Gaps = 6/46 (13%)

Query: 552 AGIPTGPK----GGPPPPPPPPGGMG-PPPPPMPGMPG-PPPPPMP 591
           A IP  P      G PPPPP PG    PPPPP+PG  G PPPPP+P
Sbjct: 46  AAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLP 91

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 27/48 (56%), Positives = 29/48 (60%), Gaps = 7/48 (14%)

Query: 551 AAGIPTGP----KGGPPPPPPPPGGMG-PPPPPMPGMPG--PPPPPMP 591
            AGIP  P        PPPPP PG  G PPPPP+PG  G  PPPPP+P
Sbjct: 57  VAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLP 104

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 23/40 (57%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 555 PTGPKGGPPPPPPPPGGMG-PPPPPMPGMPG-PPPPPMPE 592
           P       PPPPP PGG G PPPPP+PG    PPPPP+P 
Sbjct: 17  PLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPG 56

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 25/46 (54%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 552 AGIPTGPK----GGPPPPPPPPGGMG-PPPPPMPGMPG-PPPPPMP 591
            GIP  P        PPPPP PG  G PPPPP+PG    PPPPP+P
Sbjct: 34  TGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLP 79

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 27/46 (58%), Positives = 30/46 (65%), Gaps = 6/46 (13%)

Query: 552 AGIPTGPK--GGP--PPPPPPPGGMG-PPPPPMPGMPG-PPPPPMP 591
             IP  P   GG   PPPPP PGG   PPPPP+PG+ G PPPPP+P
Sbjct: 22  VCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLP 67

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 555 PTGPKGG--PPPPPPPPGGMGPPPPPMPGMPG-PPPPPMP 591
           P  P G   PPPPP P G   PPPPP+PG  G PPPPP+P
Sbjct: 4   PPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLP 43

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 22/31 (70%), Positives = 25/31 (80%), Gaps = 2/31 (6%)

Query: 563 PPPPPPPGGMG-PPPPPMPGMPG-PPPPPMP 591
           PPPPP PGG+G PPPPP+PG    PPPPP+P
Sbjct: 1   PPPPPLPGGVGIPPPPPLPGGVCIPPPPPLP 31

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 15/37 (40%), Positives = 15/37 (40%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
            T      P  PPPP     PP P P  P   PPP P
Sbjct: 49  STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPP 85

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 25/38 (65%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  GPP PP PPG  GPP PP  PG PGPP PP
Sbjct: 2   PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP 39

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 25/38 (65%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP G  GPP PP PPG  GPP PP  PG PGPP PP
Sbjct: 11  PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP 48

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 24/41 (58%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
             G P GP G  GPP PP PPG  GPP P  PG PG P PP
Sbjct: 23  PPGPP-GPPGPPGPPGPPGPPGPPGPPGP--PGAPGAPGPP 60

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 14/34 (41%), Positives = 14/34 (41%)

Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           P   PPPP        P  PP P  P  PP P P
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQP 74

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 552 AGIPTGPKGGPPPP-------PPPPGGMGPPPPPMPGMPGPPPPPMP 591
            G P  P    PPP       PPP     PPP P P +PGP  PP P
Sbjct: 43  VGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSP 89

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 14/37 (37%), Positives = 14/37 (37%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
                    PPPPPP    P P P      PPPPP  
Sbjct: 51  AAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPAD 87

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 24/39 (61%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 557 GPKGGPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
           GP G PP PP PPG  GPP    PP  PG PGPP PP P
Sbjct: 1   GPPG-PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGP 38

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 551 AAGIPTGPKGGPPP---PPPPPGGMGPPPPPMPGMP-GPPPPPMP 591
           AA  P  P   PPP   P P P      PPP P  P  PPPPP+ 
Sbjct: 53  AAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVD 97

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMPE 592
                  P  P+   P   PPP    P  PPP P  P  PPPP PE
Sbjct: 62  PPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPE 107

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 46.5 bits (110), Expect = 7e-05
 Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 5/31 (16%)

Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPP 588
           P G PPPPPPPP G  PP  P P    PPPP
Sbjct: 5   PPGNPPPPPPPP-GFEPPSQPPP----PPPP 30

Length = 2365

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 40.9 bits (97), Expect = 8e-05
 Identities = 25/38 (65%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  GPP PP PPG  GPP PP  PG PGPP PP
Sbjct: 5   PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP 42

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 16/30 (53%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMP 580
           A GIP  P G   PPPPP G   P  P +P
Sbjct: 131 APGIPPPPPGMGSPPPPPFGFGVPAAPVLP 160

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           I   PK   PP P PP    P PPP P  P P P P
Sbjct: 3   IFRAPKPPEPPAPLPPA---PVPPPPPAPPAPVPEP 35

Length = 94

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP------PPP 589
           P       PPPP        PPPP+   P PP      PPP
Sbjct: 16  PPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPP 56

Length = 57

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 15/50 (30%), Gaps = 1/50 (2%)

Query: 546 VKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
                 +G    P       P P  G    PPP    P   P P P +Y 
Sbjct: 38  QPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAP-PGVYP 86

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 15/42 (35%)

Query: 550 VAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
            A   P  P   P      P    PPPPP P  P  P P  P
Sbjct: 36  TANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDP 77

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 20/86 (23%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 510 EAIMLRQEAEAKLVQAQK---TLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPP 566
           E  +L+    A      +    LE L  G P   +         A   P      P PP 
Sbjct: 352 EMALLKMATLAPGAPVSELLDRLEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPA 411

Query: 567 PPPGGMGPPPPPMPGMPGPPPPPMPE 592
            P       P P P  P    PP   
Sbjct: 412 APARPAAARPAPAPAPPAAAAPPARS 437

Length = 576

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 14/44 (31%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           A   A     P   P  PP P        PP P      PPP P
Sbjct: 52  AAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPP 95

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 7/34 (20%)

Query: 562 PPPPP-------PPPGGMGPPPPPMPGMPGPPPP 588
           PPPP        PPP     PPPP      PPPP
Sbjct: 24  PPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57

Length = 57

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 549 QVAAGIPTGPK--GGPPPPPPPPGGMGPPPPPM----PGMPGPPPPPMPE 592
             A G    P   G PPP  P P G+ P PPP        P  PPPP P 
Sbjct: 59  LPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPPYPG 108

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 22/45 (48%), Positives = 22/45 (48%), Gaps = 16/45 (35%)

Query: 562 PPPPPPPPGGMG---------PP-----PPPMPGMPG--PPPPPM 590
           PP PPPPP G G         PP     PPP P  P   PPPPPM
Sbjct: 173 PPGPPPPPPGFGRHGEKPSGWPPFLSGWPPPFPLGPPMIPPPPPM 217

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682)

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPG 581
               G+ +G     PP  P PG   PP P  PG
Sbjct: 5   DGTGGVSSGSSAPAPPAGPGPGPNAPPAPAAPG 37

This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length. Length = 133

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 16/44 (36%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
                 +P   +   PPP P P   GP  PP P  P  P    P
Sbjct: 57  VSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPP 100

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 562 PPP-----PPPPPGGMGPPPPPMPGMPGPPPPP 589
           PPP     PPPP     PPPP    +   PPPP
Sbjct: 7   PPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPP 39

Length = 57

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 43.6 bits (103), Expect = 5e-04
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPP----PMPGMPGPPPPPMPE 592
             G P G  G PPPP  P      P        P  P  P PP  E
Sbjct: 700 PGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAE 745

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 17/37 (45%)

Query: 555  PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
            P      PP P  PP     P PP P  P PPPPP P
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Length = 3151

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 544 DEVKAQVAAGIPTGPKGGPPPPPPPP----------GGMGPPPPPMPGMPGPPPPPMPEM 593
           +   A+    +  GP+  P PP   P          G    P PP+   P P P P+ E+
Sbjct: 148 NSTAARAVVFLVVGPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHPHPIAEV 207

Length = 540

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 11/45 (24%)

Query: 562 PPPP-----PPPPGGMGPPPPPMPGM--PGPPPP----PMPEMYT 595
           PPPP     PPPP     PPPP+       PPPP    P P  Y 
Sbjct: 6   PPPPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYV 50

Length = 57

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 14/32 (43%), Positives = 15/32 (46%)

Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           G  PPPP     +   P P P M GP  P MP
Sbjct: 39  GPRPPPPYFNSSVASSPQPHPYMWGPQQPMMP 70

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 8e-04
 Identities = 26/94 (27%), Positives = 29/94 (30%), Gaps = 25/94 (26%)

Query: 528 TLEDLSSGR--------PVEKNR-LDEVKAQVAAGI-------PTGPKGGPPPPPPPPGG 571
           +LEDLS+GR        P  K R         A G        P  P     P P P   
Sbjct: 364 SLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV 423

Query: 572 M--------GPPPPPMPGMP-GPPPPPMPEMYTD 596
                     P P   PG   GP PPP  +    
Sbjct: 424 PASAPPPPATPLPSAEPGSDDGPAPPPERQPPAP 457

Length = 3151

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
           P  P+   PP P  P  M P PP  P  P PP PP+P M+
Sbjct: 99  PFQPQPLQPPQPQQP--MQPQPPVHPIPPLPPQPPLPPMF 136

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 8e-04
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPP----MPGMPGPPPPPMPEM 593
           P      PPPP PPP    P P P    M    G P PP    
Sbjct: 109 PGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 9e-04
 Identities = 16/38 (42%), Positives = 17/38 (44%)

Query: 555  PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
            P  P    P P PPP     PPPP P  P PP  P  +
Sbjct: 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD 2948

Length = 3151

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
              P PP PP     P PP P  P PP PP P
Sbjct: 4   FRAPKPPEPP----APLPPAPVPPPPPAPPAP 31

Length = 94

>gnl|CDD|218108 pfam04487, CITED, CITED

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGM------GPPPPPMPGMPGPPPPPMPEM 593
           A+G P     GP     P   M       P   P P M  P P  M  M
Sbjct: 55  ASGRPRSAMSGPMGGGHPHQSMPAYMMFNPSSKPQPFMLVPGPQLMASM 103

CITED, CBP/p300-interacting transactivator with ED-rich tail, are characterized by a conserved 32-amino acid sequence at the C-terminus. CITED proteins do not bind DNA directly and are thought to function as transcriptional co-activators. Length = 206

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
                PPPP         PPP      PPPP    +Y
Sbjct: 1   YHYKSPPPPVKQY----SPPPPYYYKSPPPPVKSPVY 33

Length = 57

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 555  PTGPKGGPPPPPPPPGGMGPPPPPMPG-MPGPPPPPMPE 592
            P  P+  P P  PPP    P PPP P   P PPPPP P+
Sbjct: 2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940

Length = 3151

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
           PP  P PP    PP PPM  M   P PP+  
Sbjct: 118 PPVHPIPPLPPQPPLPPMFPMQ--PLPPLLP 146

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
            A         PP P  P     PPP P P  P P P P
Sbjct: 97  PASPAREGSPTPPGPSSPDP---PPPTPPPASPPPSPAP 132

Length = 1352

>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 16/66 (24%)

Query: 542 RLDEVKAQVA--------AGIPTGPKGGPPPPP-PPPGGMGPPPP------PMPGMP-GP 585
           +++EV+ +V         A  P  P+  P  PP P PGG+ P  P      P   MP G 
Sbjct: 104 KVEEVRKEVEFFNNYLTDAKRPALPEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQ 163

Query: 586 PPPPMP 591
           P PPM 
Sbjct: 164 PRPPMM 169

Arsenite is a carcinogenic compound which can act as a co-mutagen by inhibiting DNA repair. Arsenite-resistance protein 2 is thought to play a role in arsenite resistance. Length = 211

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 543 LDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMP--GPPPPPMPEMYTD 596
           LD+V       + T P G     PPP  G GPP PP    P     PP  P    D
Sbjct: 891 LDQVFGPGTGRVATAPGGDAASAPPP--GAGPPAPPQAVPPPRTTQPPAAPPRGPD 944

Length = 991

>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2)

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 5/37 (13%)

Query: 562 PPPPPP-----PPGGMGPPPPPMPGMPGPPPPPMPEM 593
           P  PP       P  + PP   MP    P P P   +
Sbjct: 2   PDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMYL 38

DAZ associated protein 2 has a highly conserved sequence throughout evolution including a conserved polyproline region and several SH2/SH3 binding sites. It occurs as a single copy gene with a four-exon organisation and is located on chromosome 12. It encodes a ubiquitously expressed protein and binds to DAZ and DAZL1 through DAZ repeats. Length = 136

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.003
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 548  AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
            A+ A    T     PP  P  P     PPPP P  P PPPPP P+
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQP-QPQPPPPPQPQ 2930

Length = 3151

>gnl|CDD|221526 pfam12316, Dsh_C, Segment polarity protein dishevelled (Dsh) C terminal

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 534 SGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPP 587
                 ++ L    +  + G P     G PPP  PP  M  PPPP PG PG PP
Sbjct: 131 PSEGSVRSSLSHPSSHSSYGAP-----GVPPPYNPPMLMMKPPPPSPGPPGAPP 179

This domain family is found in eukaryotes, and is typically between 177 and 207 amino acids in length. The family is found in association with pfam00778, pfam02377, pfam00610, pfam00595. The segment polarity gene dishevelled (dsh) is required for pattern formation of the embryonic segments. It is involved in the determination of body organisation through the Wingless pathway (analogous to the Wnt-1 pathway). Length = 202

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
           +   P   P PP PP     PP PPM  M  P PP +P++
Sbjct: 114 MQPQPPVHPIPPLPPQ----PPLPPMFPMQ-PLPPLLPDL 148

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
           P  P     P  P P    P  P  P  P PP PPM  M
Sbjct: 104 PLQPPQPQQPMQPQP----PVHPIPPLPPQPPLPPMFPM 138

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 19/94 (20%)

Query: 506 AKLEEAIMLRQEAEAKLV------QAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPK 559
           +KL EA    Q+ E  L        +   LED++                          
Sbjct: 21  SKLVEAERSLQQLETTLSLLEAKLASIPGLEDVTVQTTP------------PPPASAITN 68

Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
           GGPPPPPP       PPPP      PP  P PE 
Sbjct: 69  GGPPPPPPARAEAASPPPPEAPAE-PPAEPEPEA 101

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	927
KOG1924|consensus	1102		100.0
KOG1923|consensus	830		100.0
KOG1924|consensus	1102		100.0
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	100.0
PF02181	370	FH2: Formin Homology 2 Domain; InterPro: IPR015425	100.0
PF06367	197	Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR01047	99.97
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	99.96
KOG1925|consensus	817		99.92
KOG1922|consensus	833		99.91
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	98.54
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.72
PF06345	15	Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR0	96.39
KOG1923|consensus	830		95.17
KOG0212|consensus	675		92.77
KOG2391|consensus	365		92.18
PHA03247	3151	large tegument protein UL36; Provisional	91.15
KOG4849|consensus	498		90.98
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	89.47
KOG3671|consensus	569		89.24
PHA03247	3151	large tegument protein UL36; Provisional	88.76
KOG1925|consensus	817		84.36
smart00498	432	FH2 Formin Homology 2 Domain. FH proteins control	83.79
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	83.71
KOG0132|consensus	894		82.75
PF05004	309	IFRD: Interferon-related developmental regulator (	81.67

>KOG1924|consensus

Probab=100.00  E-value=2.3e-168  Score=1406.09  Aligned_cols=807  Identities=43%  Similarity=0.728  Sum_probs=713.1

Q ss_pred             chhhhhhhhhhccccccccccccc-----hhhhccCCCHHHHHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHh
Q psy15122         47 PLANKKKMLLMHYKGTVTSYENKK-----QENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYK  121 (927)
Q Consensus        47 ~~~~K~~m~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ei~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~  121 (927)
                      ...+|.++...|...++.+...-+     +++ ...++++++...|+.++++|||++++|++|++.+...|.+||.||..
T Consensus        48 ~~~~~sk~~~~H~~~ss~sn~d~pt~q~~q~~-~~~ls~~e~~~~F~~~~~dmni~eekr~pll~K~~~ek~kmis~~l~  126 (1102)
T KOG1924|consen   48 AADFKSKPSPAHLRSSSASNNDYPTAQGLQDI-GFSLSSNEVLELFELMGEDMNINEEKRKPLLDKDLPEKRKMISQYLQ  126 (1102)
T ss_pred             hcccccCCCcccCCCccccccCCcccccHHHH-hhhccHHHHHHHHHHHhhhccccHhhhhhhhhcCchHHHHHHHHHHH
Confidence            456777888889866554443322     333 45689999999999999999999999999999999999999999987


Q ss_pred             ccccc-cccccCCCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcC-CCCC
Q psy15122        122 GTVTS-YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF-PSRS  199 (927)
Q Consensus       122 ~~~~~-~~~~~~~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l-~~~~  199 (927)
                      .+... ...+....++.+||++|+++ ++++++++||.+|||+|++||||||.+|+.+|++.++++     +.+| +++.
T Consensus       127 ~k~~~~~s~ne~~~~s~eyV~~l~~g-l~t~~l~~CleslRVsL~~npVSwvn~Fgvegl~ll~~~-----Lkrl~dsk~  200 (1102)
T KOG1924|consen  127 MKMMIRKSDNEAKGSSPEYVVELRSG-LSTKKLLECLESLRVSLTSNPVSWVNKFGVEGLGLLLDV-----LKRLRDSKV  200 (1102)
T ss_pred             HHHHHhhhhhhhccCChHHHHHHHcc-cccccHHHHHHHHhhhhcCCccHHHHHhhhhhHHHHHHH-----HHHHHhhhh
Confidence            76511 22356778999999999998 888999999999999999999999999999999999885     4555 2222


Q ss_pred             CCcchhhHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCC-chHHHHHHHHh
Q psy15122        200 RNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPD-GHDKVIKAITM  278 (927)
Q Consensus       200 ~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~-Gh~~VL~Al~~  278 (927)
                       ....+.+.++|+|+||||+|||++|+..||...+.+..++++++++.+.+|++|+++|+++|++.+. |.++||+||+.
T Consensus       201 -~~~~~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~  279 (1102)
T KOG1924|consen  201 -GSKLDIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITT  279 (1102)
T ss_pred             -hhhhHHHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHH
Confidence             2334677899999999999999999999999999999999999999999999999999999999854 99999999999


Q ss_pred             hcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHH
Q psy15122        279 SGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKV  358 (927)
Q Consensus       279 ~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~  358 (927)
                      .++.....||+|||++| .+.....+.++||+|||+|+++++||+||+|||+||+++||+++|+.|+.++++.+++|+++
T Consensus       280 ~ae~~~veRF~piv~gl-~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkv  358 (1102)
T KOG1924|consen  280 IAEAKPVERFRPIVEGL-DFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKV  358 (1102)
T ss_pred             HHhhcchhhhhhHHHHH-hccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHH
Confidence            99999999999999999 56679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHhHHHHHHHhchhcccccCCHHHHHHHHHHHhhcCCCchhhHHHHHhhhhccccchhhhhhhhhhhHHHHHHHhh
Q psy15122        359 FIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLL  438 (927)
Q Consensus       359 f~~~~~~D~~el~~r~~~~~~d~~~~~~~f~~l~~~v~~t~a~~~f~sil~~ll~~~~~~~~~~~~~~~p~~lSilQhll  438 (927)
                      |++++++|.++|++|+++++.++||+.+||++|++.|++|.+++||                          |||||||+
T Consensus       359 fdE~~e~Dl~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yf--------------------------LSILQhll  412 (1102)
T KOG1924|consen  359 FDEHKEDDLEELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYF--------------------------LSILQHLL  412 (1102)
T ss_pred             HhhhhhhhHHHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchH--------------------------HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999                          99999999


Q ss_pred             hccchhhHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccchHHHHHHHHhhh-hhHhHHHHHHHHHHHHHHHHHHH
Q psy15122        439 FIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSK-TEEDRRVEDLSAKLEEAIMLRQE  517 (927)
Q Consensus       439 li~~d~~~~~~~~~Lid~~v~qivl~r~g~d~d~~~~~~~~~dv~~ll~~l~~~~~-~~~~k~~~el~~kle~~~~~~qe  517 (927)
                      +||+|+.+|++||+|||+||||||+|++|+||||.++.+|++|+..+||.++++++ ++.++++.++.++++++.+++||
T Consensus       413 lirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe  492 (1102)
T KOG1924|consen  413 LIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQE  492 (1102)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 77778999999999999999999


Q ss_pred             HHHHHHHHhhhhhcccCCC---------------CCCCCCCCC---------C--cC-CCCCCCCCCCC------CCCCC
Q psy15122        518 AEAKLVQAQKTLEDLSSGR---------------PVEKNRLDE---------V--KA-QVAAGIPTGPK------GGPPP  564 (927)
Q Consensus       518 ~ea~~~~le~~i~~l~~~~---------------~~~~~~~p~---------~--~~-~~~~~~ppppp------~~ppp  564 (927)
                      +++++++.+.+|..++++.               +++||++||         |  || |+++|||||||      |+|||
T Consensus       493 ~qael~k~e~Ki~~l~ae~~al~s~~~~~~~~~~iP~PP~~pp~gG~g~pppPppPPlpggag~PPPPpplPg~aG~PPp  572 (1102)
T KOG1924|consen  493 AQAELQKHEEKIKLLEAEKQALSSPSQLLPIDGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPP  572 (1102)
T ss_pred             HHHHHHHhhhhcccCchhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCc
Confidence            9999999999998887651               111111110         0  00 00111111111      12333


Q ss_pred             CCCCCC-CCCCCCCCCCC----CCCCCCCC-------CC-----------------------------------------
Q psy15122        565 PPPPPG-GMGPPPPPMPG----MPGPPPPP-------MP-----------------------------------------  591 (927)
Q Consensus       565 ppp~pg-~~~ppppp~pg----~p~pp~p~-------lp-----------------------------------------  591 (927)
                      |||||| +||||||||+|    +||||+|-       ||                                         
T Consensus       573 Pppppg~~gppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk  652 (1102)
T KOG1924|consen  573 PPPPPGGGGPPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDK  652 (1102)
T ss_pred             cCCCCCCCCCCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCccccCCCCCccccCCccccCccccCccceeeecchhh
Confidence            333333 23333333322    22222210       22                                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy15122        592 --------------------------------------------------------------------------------  591 (927)
Q Consensus       592 --------------------------------------------------------------------------------  591 (927)
                                                                                                      
T Consensus       653 ~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse  732 (1102)
T KOG1924|consen  653 LENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSE  732 (1102)
T ss_pred             ccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------ccccccccccccccccchhhh
Q psy15122        592 -----------------------------------------------------------EMYTDCHKNIINGKQACEEVK  612 (927)
Q Consensus       592 -----------------------------------------------------------e~v~~i~~~i~~v~~A~~el~  612 (927)
                                                                                 |.|++|+|+|.+|++||+||+
T Consensus       733 ~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~r  812 (1102)
T KOG1924|consen  733 SMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELR  812 (1102)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHH
Confidence                                                                       889999999999999999999


Q ss_pred             hchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHHHHhhCCccCchhhhhhhHHHhh
Q psy15122        613 QSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAA  692 (927)
Q Consensus       613 ~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~v~~~~p~ll~f~~eL~~v~~As  692 (927)
                      +|++|.++|++||.+|||||+||++.+||||+|++|+||.||||+|+|+||||||+++|+++||++++|.+||.||++||
T Consensus       813 kSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaS  892 (1102)
T KOG1924|consen  813 KSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKAS  892 (1102)
T ss_pred             hhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q psy15122        693 RVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDK  772 (927)
Q Consensus       693 kvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd~  772 (927)
                      |||.+.|.+.+.+|...+++++.+++.++..  .+++|.|.++|..|.++|++++..|..++.+|++.|+++.+||.+|+
T Consensus       893 rvnad~ikK~~~~m~~~ik~Le~dlk~~~~~--~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~  970 (1102)
T KOG1924|consen  893 RVNADEIKKNLQQMENQIKKLERDLKNFKIA--GNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDP  970 (1102)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCc
Confidence            9999999999999999999999999999887  78999999999999999999999999999999999999999999999


Q ss_pred             CCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccchHHHHHHHH
Q psy15122        773 NIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEAL  852 (927)
Q Consensus       773 ~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~rr~~~akekaerek~er~~~kk~~~~~~~~~~~~~v~D~Ll~~L  852 (927)
                      +++++||||++|.+|.++|..|++||+++|+++|+.||+++|+|++++|++|||+|+++++||++.+|++||||+||++|
T Consensus       971 kkysmEEFFaDi~tFrnaf~ea~~en~krRee~Ek~rr~k~a~eqseqEr~erQqrk~alIdm~a~~de~GVmDslLeaL 1050 (1102)
T KOG1924|consen  971 KKYSMEEFFADIRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQERLERQQRKKALIDMNAEGDETGVMDSLLEAL 1050 (1102)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCCCCCCccccccchhhHHHhhhhcCCCCCcHHHHhhhhhcccCCCcccccc
Q psy15122        853 QTGRPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKRQNDRPMGAERRAQLNRSRSRNGIVITRE  917 (927)
Q Consensus       853 rsg~p~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  917 (927)
                      +|                       |+||+.||+|.+.+++  |  ||.+|.|||||+..+.+..
T Consensus      1051 qs-----------------------gaafr~rrk~~prq~~--~--r~g~l~rsrsrh~~a~gql 1088 (1102)
T KOG1924|consen 1051 QS-----------------------GAAFRTRRKRLPRQTR--G--RRGCLDRSRSRHQNALGQL 1088 (1102)
T ss_pred             Hh-----------------------hccccCcccccCCCCc--c--cccchhhhhHhhhhhhhHH
Confidence            99                       9999988887643322  2  9999999999988776543

>KOG1923|consensus

Probab=100.00  E-value=2.2e-56  Score=507.75  Aligned_cols=204  Identities=28%  Similarity=0.422  Sum_probs=192.8

Q ss_pred             ccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHHH
Q psy15122        592 EMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTI  671 (927)
Q Consensus       592 e~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~v  671 (927)
                      |.+.-+.|++.+++.|+..+++|.+|+.+|++||++|||||.+ +||.+|||+|+||.-|.+|||+|.++||||||+-.+
T Consensus       538 dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD~ll~tkStDr~~tLlh~iv~~i  616 (830)
T KOG1923|consen  538 DSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLDSLLDTKSTDRSMTLLHYIVLTI  616 (830)
T ss_pred             hhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccHHHhhccCCccceeeeehhhHHH
Confidence            7788899999999999999999999999999999999999997 569999999999999999999999999999999999


Q ss_pred             HhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHH
Q psy15122        672 EQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLS  751 (927)
Q Consensus       672 ~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~  751 (927)
                      +++||.+..|.+||..+++|+.|+++.+..||.+|.++....+++.+..       ..|   ..|..|+..+..+++.|+
T Consensus       617 ~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~-------~~~---~iL~~F~~n~~~kmkkl~  686 (830)
T KOG1923|consen  617 AEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETERE-------GLD---VILSEFLDNNKPKMKKLR  686 (830)
T ss_pred             HHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhh-------ccc---hHHHHHHhcccHHHHHHH
Confidence            9999999999999999999999999999999999999999999977642       222   679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        752 NMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEE  806 (927)
Q Consensus       752 ~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~ee  806 (927)
                      ..++.+...|..++.||||.|+..+|..||..|..|+..|+.+..||+.+.+.|+
T Consensus       687 ~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~  741 (830)
T KOG1923|consen  687 KDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEA  741 (830)
T ss_pred             HHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence            9999999999999999999999999999999999999999999999988877654

>KOG1924|consensus

Probab=100.00  E-value=4.5e-43  Score=395.85  Aligned_cols=396  Identities=21%  Similarity=0.283  Sum_probs=291.5

Q ss_pred             HhhcCCHHHHHHHHHHhhccCCCCcccccccccCchhhhhhhhhhcccccc------ccccccchhhhccCCCHHHHHHH
Q psy15122         13 MLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV------TSYENKKQENMLEKLNPEQLNQK   86 (927)
Q Consensus        13 ~~~~~~~~~~~~~f~~~~~~~n~~~~~~~~~~~~~~~~K~~m~~~~~~~~~------~~~~~~~~~~~~~~~~~~ei~~~   86 (927)
                      +...+|+++++++|++|++||||+||||+||+.|++.+|++||+||++++.      ++...++++|+++..++ --+..
T Consensus        79 ~~~~ls~~e~~~~F~~~~~dmni~eekr~pll~K~~~ek~kmis~~l~~k~~~~~s~ne~~~~s~eyV~~l~~g-l~t~~  157 (1102)
T KOG1924|consen   79 IGFSLSSNEVLELFELMGEDMNINEEKRKPLLDKDLPEKRKMISQYLQMKMMIRKSDNEAKGSSPEYVVELRSG-LSTKK  157 (1102)
T ss_pred             HhhhccHHHHHHHHHHHhhhccccHhhhhhhhhcCchHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHcc-ccccc
Confidence            355799999999999999999999999999999999999999999998844      34577889999998776 66778


Q ss_pred             HHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccccccccccCCCChHHHHHHhc---C---C-ccchhhhhhhHHH
Q psy15122         87 FEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLS---Q---P-ELSVNKMYSCIES  159 (927)
Q Consensus        87 F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~---~---~-~~~~~~~~~~l~~  159 (927)
                      ..+|+++++++      |+++|.                ||+++|+.++-..|...|+   +   + .+..+.++++|+|
T Consensus       158 l~~CleslRVs------L~~npV----------------Swvn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrC  215 (1102)
T KOG1924|consen  158 LLECLESLRVS------LTSNPV----------------SWVNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRC  215 (1102)
T ss_pred             HHHHHHHHhhh------hcCCcc----------------HHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            89999999999      999999                9999999998888887663   1   2 2356688999999


Q ss_pred             HHHHhccCCchhHHHHhh---hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHh--hHHHHhcchh
Q psy15122        160 LRIALTNHPLSWVNEFVL---QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTV--GLKQMFGQKE  234 (927)
Q Consensus       160 Lrv~L~t~~~sWv~~F~~---~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~--Gl~~vl~~~~  234 (927)
                      ||..++|   .|+..-+.   .++-.|        +..+      |.+.+.++.++|+.|.|+|....  |+++||   .
T Consensus       216 lka~mNn---~~Gl~~vL~~e~~llll--------a~al------dpr~pnmm~dvvkllsalciV~ee~~~ekvl---~  275 (1102)
T KOG1924|consen  216 LKAFMNN---KFGLVLVLRRERSLLLL--------ARAL------DPREPNMMTDVVKLLSALCIVGEENGLEKVL---E  275 (1102)
T ss_pred             HHHHhcc---ccceeeeecCCccHHHH--------HHhc------CccCccHHHHHHHHHHHHheeehhhHHHHHH---H
Confidence            9999999   99888774   343222        3333      66778899999999999999865  999987   7


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15122        235 ALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINA  314 (927)
Q Consensus       235 ~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~  314 (927)
                      +|+++|..-...++++.+++|+.+..+.++  -++-.+|+|+++.          +-.-.+|.|.+++.++.++...|..
T Consensus       276 aiT~~ae~~~veRF~piv~gl~~~e~~~l~--vacmq~INal~t~----------p~dldfRlhlR~E~mr~gL~~~l~~  343 (1102)
T KOG1924|consen  276 AITTIAEAKPVERFRPIVEGLDFLEKQQLQ--VACMQFINALVTS----------PSDLDFRLHLRSEFMRDGLHKYLPD  343 (1102)
T ss_pred             HHHHHHhhcchhhhhhHHHHHhccchHHHH--HHHHHHHHHhcCC----------HHHhhHHHHHHHHHHHHhHHHHHHH
Confidence            899999998899999999988764322222  1333399999887          5555677788999999999999998


Q ss_pred             HH-cCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhhhHhHHHHHHHhchhcccccCCHHHHHHHHHH
Q psy15122        315 IV-ATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRN  393 (927)
Q Consensus       315 Lv-~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~~~~D~~el~~r~~~~~~d~~~~~~~f~~l~~  393 (927)
                      +- ..++++++++.+++|+...+|.++..+|.+     +...+     ...+|+++++...                +..
T Consensus       344 l~~i~n~~ldvqlkvfdE~~e~Dl~el~~rled-----ir~em-----Dd~~~~f~lL~n~----------------vkd  397 (1102)
T KOG1924|consen  344 LTEINNDILDVQLKVFDEHKEDDLEELSGRLED-----IRAEM-----DDANEVFELLANT----------------VKD  397 (1102)
T ss_pred             hhhhccHHHHHHHHHHhhhhhhhHHHHHhHHHh-----hhhhh-----ccHHHHHHHHHHh----------------hhh
Confidence            84 367899999999999999999999999987     33333     3445666666543                111


Q ss_pred             HhhcCCCchhhHHHHHhhhhcccc----------------chhhhhhhhhhhHHHHHHHhhhccchhhHHHHHHHHHHHH
Q psy15122        394 MVMDSACEPYLLSILQHLLFIRDD----------------QNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEEC  457 (927)
Q Consensus       394 ~v~~t~a~~~f~sil~~ll~~~~~----------------~~~~~~~~~~p~~lSilQhllli~~d~~~~~~~~~Lid~~  457 (927)
                      +-.++.--..    ||||+.+++|                |++.|+.+|+|+|          .+...+......+||.|
T Consensus       398 T~aE~yfLSI----LQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf----------~yr~~l~id~~~liD~~  463 (1102)
T KOG1924|consen  398 TGAEPYFLSI----LQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDF----------KYRFRLDIDLTELIDKM  463 (1102)
T ss_pred             ccccchHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCc----------chhhcccCcHHHHHHHH
Confidence            1122221222    3777777777                3445566666554          22223345566789999


Q ss_pred             HHHHHhccCCCCCCccccccccccchHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15122        458 VSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQK  527 (927)
Q Consensus       458 v~qivl~r~g~d~d~~~~~~~~~dv~~ll~~l~~~~~~~~~k~~~el~~kle~~~~~~qe~ea~~~~le~  527 (927)
                      +.+.                       .++...+++.+...+-+++++.+.+.+.. -|..++|+..++.
T Consensus       464 vdka-----------------------k~eeseqkA~e~~kk~~ke~ta~qe~qae-l~k~e~Ki~~l~a  509 (1102)
T KOG1924|consen  464 VDKA-----------------------KAEESEQKAAELEKKFDKELTARQEAQAE-LQKHEEKIKLLEA  509 (1102)
T ss_pred             HHHH-----------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhhhhcccCch
Confidence            9643                       33444444444445556777776665432 2222355554443

>smart00498 FH2 Formin Homology 2 Domain

Probab=100.00  E-value=3.5e-43  Score=406.00  Aligned_cols=260  Identities=40%  Similarity=0.638  Sum_probs=233.8

Q ss_pred             CCccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHH
Q psy15122        590 MPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVD  669 (927)
Q Consensus       590 lpe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~  669 (927)
                      +++.+.+|+++|..+..||++|++|+.|+.||++||++|||||+|+++|+|+||+|+||.||.||||+|+++||||||++
T Consensus       172 f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~  251 (432)
T smart00498      172 FEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVK  251 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCCCccHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHH
Q psy15122        670 TIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITL  749 (927)
Q Consensus       670 ~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~  749 (927)
                      +|++++|++++|.+||++|..|++|| ++|.+++++|.+++..++.++..+..+  ...+|.|..+|.+|+..|..+++.
T Consensus       252 ~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~--~~~~d~f~~~m~~F~~~a~~~~~~  328 (432)
T smart00498      252 IIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDP--ENLDDKFIEVMKPFLKAAKEKYDK  328 (432)
T ss_pred             HHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 999999999999999999888776655  344699999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy15122        750 LSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKK-DKAAR  828 (927)
Q Consensus       750 L~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~rr~~~akekaerek~-er~~~  828 (927)
                      |+..+..+...|.+++.||||++++.++++||++|.+|+..|.+|++||++++++|++ ++.+..++..+.... +++..
T Consensus       329 l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~  407 (432)
T smart00498      329 LQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEE-RRKQLVKETTEYEQSSSRQKE  407 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999988876653 555556666554432 33333


Q ss_pred             hhhhccCCCCCCccchHHHHHHHHh
Q psy15122        829 KKALIDMTTDQTQQGVMDSLLEALQ  853 (927)
Q Consensus       829 kk~~~~~~~~~~~~~v~D~Ll~~Lr  853 (927)
                      .....++....|..|+||+++.+++
T Consensus       408 ~~~~~~~~~~~d~~~~~d~~~~~~~  432 (432)
T smart00498      408 RNPSMDFEVERDFLGVLDSLLEELG  432 (432)
T ss_pred             ccchhhhhhhhhhhhhHHHHHHhhC
Confidence            3445566667889999999998874

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=100.00  E-value=1.7e-35  Score=337.02  Aligned_cols=201  Identities=34%  Similarity=0.630  Sum_probs=186.4

Q ss_pred             CCccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHH
Q psy15122        590 MPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVD  669 (927)
Q Consensus       590 lpe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~  669 (927)
                      +|+.+.++.+.|..+..||++|++|+.|+.+|++||.+|||||+|+++|+|+||+|+||.||.+|||+|+++||||||++
T Consensus       170 f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~  249 (370)
T PF02181_consen  170 FEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTTLLHYLVK  249 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCchHHHHHHH
Confidence            44889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHH
Q psy15122        670 TIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITL  749 (927)
Q Consensus       670 ~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~  749 (927)
                      ++.+++|+++.|.+||++|..|++++++++..++++|++++..++.+++.....  .+.+|.|..+|.+|++.+..++..
T Consensus       250 ~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~--~~~~~~f~~~~~~f~~~~~~~~~~  327 (370)
T PF02181_consen  250 IVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKD--EEDDDKFKEKMKEFLEEAETKLDE  327 (370)
T ss_dssp             HHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTT--SSTT-THHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999886653  567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHH
Q psy15122        750 LSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFY  792 (927)
Q Consensus       750 L~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~  792 (927)
                      |+..+.++++.|.+++.||||+++++++++||++|.+|+..|+
T Consensus       328 l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~fk  370 (370)
T PF02181_consen  328 LQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMFK  370 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999996

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.

>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []

Probab=99.97  E-value=3.1e-31  Score=275.80  Aligned_cols=195  Identities=41%  Similarity=0.711  Sum_probs=173.6

Q ss_pred             CchHHHHHHHHhhccc-ccCcChHHHHHHHhc-cCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHH
Q psy15122        267 DGHDKVIKAITMSGEL-KGKERFQPVVQGLMV-KGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDAL  344 (927)
Q Consensus       267 ~Gh~~VL~Al~~~~~~-~e~~RF~~lv~~L~~-~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L  344 (927)
                      |||.+||+||++++.. +++.||++||..|.. ...+.+|+++||.|||+||++++|+++|+|||+||..+||.+++++|
T Consensus         1 ~G~~~vl~a~~~~~~~~~e~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l   80 (197)
T PF06367_consen    1 GGHEKVLEAFDNFKEVKGERGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKL   80 (197)
T ss_dssp             -HHHHHHHHHHHHHHHHT-S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhCCcccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHH
Confidence            6999999999999987 789999999999954 67889999999999999999999999999999999999999999999


Q ss_pred             hhcCChhHHHHHHHHhhhhHhHHHHHHHhchhcccccCCHHHHHHHHHHHhhcCCCchhhHHHHHhhhhccccchhhhhh
Q psy15122        345 EKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDS  424 (927)
Q Consensus       345 ~~~~~~~L~~ql~~f~~~~~~D~~el~~r~~~~~~d~~~~~~~f~~l~~~v~~t~a~~~f~sil~~ll~~~~~~~~~~~~  424 (927)
                      +...++.|..||++|++...+|++++.++++....+++++.+||..|.+.+.+|+++.||                    
T Consensus        81 ~~~~~~~L~~Qi~~f~~~~~~D~~el~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------------------  140 (197)
T PF06367_consen   81 RNLEDDDLQEQIDIFEENEEEDEEELLERFDSKTVDLSDPQELFEALLEKLKDTEAEDYF--------------------  140 (197)
T ss_dssp             TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHTTSTTHHHH--------------------
T ss_pred             HhcchHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccHHHHHHHHHHHHhCcccHHHH--------------------
Confidence            999999999999999999999999999999989999999999999999999999999999                    


Q ss_pred             hhhhhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccchHHHH
Q psy15122        425 ACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE  487 (927)
Q Consensus       425 ~~~p~~lSilQhllli~~d~~~~~~~~~Lid~~v~qivl~r~g~d~d~~~~~~~~~dv~~ll~  487 (927)
                            +|++||++.++.+...+.+||++|+++|+||++++.+.|+++.....+.+++..|++
T Consensus       141 ------~siLq~ll~i~~~~~~~~~~~~lie~~v~~i~~~~~~~~~~~~~~~~l~~~i~~L~d  197 (197)
T PF06367_consen  141 ------LSILQHLLLIRQDEEERSKYWQLIESLVSQIVLDRKGIDPDDDEQSSLEIDINRLLD  197 (197)
T ss_dssp             ------HHHHHHHTTS-TTTTTHHHHHHHHHHHHHHHHSSGGGS-S-TTSS-EEEEEHSCSHH
T ss_pred             ------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhccccCchHHHhhhHHHHHHHhcC
Confidence                  899999999877888889999999999999999999999988767788888877654

Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=99.96  E-value=9.5e-30  Score=262.16  Aligned_cols=177  Identities=28%  Similarity=0.520  Sum_probs=134.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhcccccc-------ccccCCCChHHHHHHhcCCccch
Q psy15122         78 LNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSY-------ENKSKFDKPIEYIQYLSQPELSV  150 (927)
Q Consensus        78 ~~~~ei~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~-------~~~~~~~~P~~~i~~L~~~~~~~  150 (927)
                      +++++|+++|+++|++||+++++|+.|+++|.++||+||++|........       .......+|++||+.|+++..+.
T Consensus         3 p~~~~v~~~F~~ll~~~~~~~~~r~~l~~~~~ekKw~li~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~L~~~~~~~   82 (187)
T PF06371_consen    3 PSEEEVDEMFEELLEELNLPEEKRKELRNLPPEKKWQLIQQHRQKQAKHSSSSSKSKSKASAKSSPEWYIKKLKSRPSTS   82 (187)
T ss_dssp             ------HHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHH-----------------CHHHHHHHHHHTTT--HH
T ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHhHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHccCccH
Confidence            47899999999999999999999999999999999999999988654111       12345679999999998876543


Q ss_pred             hhhhhhHHHHHHHhccCCchhHHHHh-hhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHhhHHHH
Q psy15122        151 NKMYSCIESLRIALTNHPLSWVNEFV-LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQM  229 (927)
Q Consensus       151 ~~~~~~l~~Lrv~L~t~~~sWv~~F~-~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~v  229 (927)
                          +.|.+|+|+|||++++||++|+ .+|+..|+++ |..+...    ......+...+++|++|||||||+++|+..|
T Consensus        83 ----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~-L~~~~~~----~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v  153 (187)
T PF06371_consen   83 ----KILKSLRVSLRTNPISWVQEFLELGGLEALLNV-LSKLNKK----KEKSEEDIDIEHECLRCLKALMNTKYGLEAV  153 (187)
T ss_dssp             ----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHH-HHHHHTH----HCTCTTCHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred             ----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHH-HHHhhhh----hhhcchhHHHHHHHHHHHHHHHccHHHHHHH
Confidence                5799999999999999999998 5899999885 3333221    1122345678999999999999999999999


Q ss_pred             hcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcc
Q psy15122        230 FGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCL  263 (927)
Q Consensus       230 l~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~  263 (927)
                      +.++++|..|+.|+++++++++.+|+|+|+++|+
T Consensus       154 ~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~  187 (187)
T PF06371_consen  154 LSHPDSVNLIALSLDSPNIKTRKLALEILAALCL  187 (187)
T ss_dssp             HCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred             HcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999996

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1925|consensus

Probab=99.92  E-value=2.2e-24  Score=234.94  Aligned_cols=201  Identities=18%  Similarity=0.361  Sum_probs=180.6

Q ss_pred             cccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHHHHhh
Q psy15122        595 TDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQK  674 (927)
Q Consensus       595 ~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~v~~~  674 (927)
                      .+|..-|-.+..|.+++-+|..|+-+|..+|+||||+|+.    ++.||.|++|.|..++|++-.|.||||+++.++.++
T Consensus       451 KeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsEVKDtV~KqsLlhHlc~~vVE~  526 (817)
T KOG1925|consen  451 KEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSEVKDTVRKQSLLHHLCSLVVET  526 (817)
T ss_pred             HHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchhhcchHHHHHHHHHHHHHHHHh
Confidence            3455556668889999999999999999999999999973    789999999999999999999999999999999999


Q ss_pred             CCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHH
Q psy15122        675 FPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMS  754 (927)
Q Consensus       675 ~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~  754 (927)
                      ||+-.+++.|+..|...+||+++++..++-+|++.++.-+..|....+.   .-...+...|..|+.++.+++..|+.-+
T Consensus       527 FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakh---e~~p~l~~r~~~fl~~cA~RI~~LKivh  603 (817)
T KOG1925|consen  527 FPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKH---ELAPALRARLTHFLDQCARRIAMLKIVH  603 (817)
T ss_pred             CCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888765332   1233478899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccCCCC---CcccchhccHHHHHHHHHHHHHHHHHHH
Q psy15122        755 KNMMTLYGDLAEFYTFDKNI---YTLEEFFTDIKTFKDSFYQAWQENIKLR  802 (927)
Q Consensus       755 ~~~~~~~~~l~~yfgEd~~~---~~~eefF~~~~~F~~~f~~a~~en~~~~  802 (927)
                      ..+.+.|.+++-|||..+..   .+++.||.++.+|.-.|...++.+.+++
T Consensus       604 rr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~  654 (817)
T KOG1925|consen  604 RRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQQQ  654 (817)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999998764   4799999999999999999987776643

>KOG1922|consensus

Probab=99.91  E-value=1.7e-23  Score=261.47  Aligned_cols=213  Identities=29%  Similarity=0.466  Sum_probs=191.6

Q ss_pred             ccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHH-HHHH
Q psy15122        592 EMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHY-LVDT  670 (927)
Q Consensus       592 e~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~-l~~~  670 (927)
                      +.+..+.+.+..+..||.++++|..|.+++++||..|||||.|+.+|+|+||+|.+|.||.|+|+.++++++||+ +.++
T Consensus       563 ~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~~~~~~l~~~~~e~  642 (833)
T KOG1922|consen  563 EEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSDGKTTLLHFVVPEV  642 (833)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhcccccchhhhhhHHHH
Confidence            567788889999999999999999999999999999999999999999999999999999999999999765555 4455


Q ss_pred             HHhhC---------------CccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCcchhHHH
Q psy15122        671 IEQKF---------------PECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQ-NCKQAPVANENDKFLE  734 (927)
Q Consensus       671 v~~~~---------------p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~-~~~~~~~~~~~D~f~~  734 (927)
                      ++...               |.+.+|.+||..|..|++++++.+.+++..|.+++..+.+.+. ...... .+..|.|..
T Consensus       643 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~f~~  721 (833)
T KOG1922|consen  643 VRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNES-LPPGDPFSK  721 (833)
T ss_pred             HHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCccchhhh
Confidence            55444               4779999999999999999999999999999999999999995 432221 457889999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCcccchhccHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        735 IMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLREAE  805 (927)
Q Consensus       735 ~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd~-~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~e  805 (927)
                      +|..|+..|..++..+...+..+...+..+++|||+++ ...++.+||.++..|+..|.++++|+.+.++++
T Consensus       722 ~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~~~e~~~~~~k~  793 (833)
T KOG1922|consen  722 VKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKAHEENKKAEEKE  793 (833)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999 577899999999999999999999998877654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=98.54  E-value=3e-08  Score=102.20  Aligned_cols=138  Identities=20%  Similarity=0.353  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHhhccCCCCcccccccccCchhhhhhhhhhccccccccc------------cccchhhhccCCCHHHHH
Q psy15122         17 LNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSY------------ENKKQENMLEKLNPEQLN   84 (927)
Q Consensus        17 ~~~~~~~~~f~~~~~~~n~~~~~~~~~~~~~~~~K~~m~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ei~   84 (927)
                      .++++|+++|+++|++||+++++|++++..|..+|+.|+.+|........            ..+|..|+....+..- .
T Consensus         3 p~~~~v~~~F~~ll~~~~~~~~~r~~l~~~~~ekKw~li~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~L~~~~~-~   81 (187)
T PF06371_consen    3 PSEEEVDEMFEELLEELNLPEEKRKELRNLPPEKKWQLIQQHRQKQAKHSSSSSKSKSKASAKSSPEWYIKKLKSRPS-T   81 (187)
T ss_dssp             ------HHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHH-----------------CHHHHHHHHHHTTT---H
T ss_pred             CCHHHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHhHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHccCc-c
Confidence            58999999999999999999999999999999999999988887632111            1122222222211111 1


Q ss_pred             HHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhcccccccccc-CCCChHHHHHHhcC-------Cccchhhhhhh
Q psy15122         85 QKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKS-KFDKPIEYIQYLSQ-------PELSVNKMYSC  156 (927)
Q Consensus        85 ~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~-~~~~P~~~i~~L~~-------~~~~~~~~~~~  156 (927)
                         .+.|.++.+.      |+..+.                +|...| ...|...++..|..       ........++|
T Consensus        82 ---~~~L~~L~v~------Lrt~~~----------------~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~  136 (187)
T PF06371_consen   82 ---SKILKSLRVS------LRTNPI----------------SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHEC  136 (187)
T ss_dssp             ---HHHHHHHHHH------HHHS-H----------------HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHH
T ss_pred             ---HHHHHHHHHH------hccCCc----------------hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHH
Confidence               1555555444      666666                555444 23445555554421       11123467899


Q ss_pred             HHHHHHHhccCCchhHHHHhh---hhhhhh
Q psy15122        157 IESLRIALTNHPLSWVNEFVL---QDNKNF  183 (927)
Q Consensus       157 l~~Lrv~L~t~~~sWv~~F~~---~Gl~~L  183 (927)
                      |+|||+.+++   .++.+.+.   +++..|
T Consensus       137 l~Clkal~n~---~~G~~~v~~~~~~v~~i  163 (187)
T PF06371_consen  137 LRCLKALMNT---KYGLEAVLSHPDSVNLI  163 (187)
T ss_dssp             HHHHHHHTSS---HHHHHHHHCSSSHHHHH
T ss_pred             HHHHHHHHcc---HHHHHHHHcCcHHHHHH
Confidence            9999999999   78777763   344444

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.72  E-value=0.02  Score=57.15  Aligned_cols=145  Identities=13%  Similarity=0.238  Sum_probs=96.8

Q ss_pred             chhHHHHh-hhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHh-hHHHHhcchhHHHHHHHhcCCC
Q psy15122        169 LSWVNEFV-LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTV-GLKQMFGQKEALTIVARSLDPN  246 (927)
Q Consensus       169 ~sWv~~F~-~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~-Gl~~vl~~~~~i~~la~sl~~~  246 (927)
                      ++|-.+|+ .+|+..|+.+     .+.-  .. .+.-...+..-++.|+--+|.... ||+.+  .+..|..+|..++..
T Consensus         1 ~TFA~EFI~~~Gl~~L~~~-----iE~g--~~-~~~~~~~~La~~L~af~eLMeHg~vsWd~l--~~~FI~Kia~~Vn~~   70 (160)
T PF11841_consen    1 VTFAQEFISRDGLTLLIKM-----IEEG--TE-IQPCKGEILAYALTAFVELMEHGIVSWDTL--SDSFIKKIASYVNSS   70 (160)
T ss_pred             CchHHHHHhccCHHHHHHH-----HHcC--Cc-cCcchHHHHHHHHHHHHHHHhcCcCchhhc--cHHHHHHHHHHHccc
Confidence            46778999 4899998874     3321  00 011123556778999999999866 88754  568899999887644


Q ss_pred             C--hhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHH
Q psy15122        247 K--PTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEF  324 (927)
Q Consensus       247 ~--~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~  324 (927)
                      .  ..+...++.+|=.+++-++.+|..|-+          .-.+..++..|  ...+.+++..+|.+||+|....+|- -
T Consensus        71 ~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~----------evt~~~Li~hL--q~~~~~iq~naiaLinAL~~kA~~~-~  137 (160)
T PF11841_consen   71 AMDASILQRSLAILESIVLNSPKLYQLVEQ----------EVTLESLIRHL--QVSNQEIQTNAIALINALFLKADDS-K  137 (160)
T ss_pred             cccchHHHHHHHHHHHHHhCCHHHHHHHhc----------cCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHhcCChH-H
Confidence            4  445555777776666655445555543          34566888888  4488999999999999998776653 3


Q ss_pred             HHHHHHHHHHhC
Q psy15122        325 RLHLRNEIMRVG  336 (927)
Q Consensus       325 Ri~lR~Ef~~~G  336 (927)
                      |-.+..-|..-.
T Consensus       138 r~~i~~~l~~k~  149 (160)
T PF11841_consen  138 RKEIAETLSQKQ  149 (160)
T ss_pred             HHHHHHHHHHHH
Confidence            334444444433

>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs)

Probab=96.39  E-value=0.0021  Score=36.64  Aligned_cols=13  Identities=100%  Similarity=1.306  Sum_probs=11.3

Q ss_pred             chHHHHHHHHhcC
Q psy15122        843 GVMDSLLEALQTG  855 (927)
Q Consensus       843 ~v~D~Ll~~Lrsg  855 (927)
                      ||||+||++|++|
T Consensus         1 gvmdsllealqtg   13 (15)
T PF06345_consen    1 GVMDSLLEALQTG   13 (15)
T ss_dssp             -HHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHcc
Confidence            7999999999994

It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.

>KOG1923|consensus

Probab=95.17  E-value=0.033  Score=66.58  Aligned_cols=145  Identities=23%  Similarity=0.339  Sum_probs=136.6

Q ss_pred             HHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhccc-ccCcChHHHHHH
Q psy15122        216 IRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGEL-KGKERFQPVVQG  294 (927)
Q Consensus       216 LkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~-~e~~RF~~lv~~  294 (927)
                      |+++|||.+|+..|..|+.+++++|.++.+.+.+|++.|+++|++||++- |||+.++.|+..|+.+ .|..||++++..
T Consensus         1 laas~~~~~g~~~v~s~p~A~~~ia~S~~~~n~rtktsvl~~lasic~v~-gg~E~~~~a~~~f~~v~qe~~rf~~lm~~   79 (830)
T KOG1923|consen    1 LAASMNNKAGFGQVGSVPPAIACIANSSKHTNLRTKTSVLGSLASICYVI-GGSEQSWPAAPVFSKVNQEPRRFNTLMYV   79 (830)
T ss_pred             CCcccccccccCCCCCCchHHHHhhHhhccCCcchHHHHHHHHHHHHHHh-cCceeecccCcchhhhhcCcccccccccc
Confidence            57899999999999999999999999999999999999999999999997 9999999999999987 789999999998


Q ss_pred             Hh-ccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhh
Q psy15122        295 LM-VKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEH  362 (927)
Q Consensus       295 L~-~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~  362 (927)
                      +. ....|.++.++||+|+|.+++ .+|+++|+|+++||..+||+.+++.+...+.+.+..|+..|.++
T Consensus        80 ~s~~~~fn~df~~a~lQf~~ifv~-v~d~n~rvhlQye~t~lgld~yi~~~~e~ese~l~~Q~~sy~dn  147 (830)
T KOG1923|consen   80 HSLPPFFNADFSAAKLQFYDVFVG-VPDENFRVHLQYEATHLGLDKYIDAPPENESEELQRQFQSYTDN  147 (830)
T ss_pred             ccCccccChHHHHHHHHHHHHHhc-chhhhhHHHhhhHHHHHhhhhhhhcchhhhhHHHHHHHHHHhhh
Confidence            84 235899999999999999999 99999999999999999999999999999999999999888754

>KOG0212|consensus

Probab=92.77  E-value=8.7  Score=45.43  Aligned_cols=150  Identities=18%  Similarity=0.277  Sum_probs=82.2

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHhhhhcccCCC-chHHHHHH-HHhhccc--ccCcChHHHHHHH----------------
Q psy15122        236 LTIVARSLDPNKPTVMLEAVKVLAAVCLIPPD-GHDKVIKA-ITMSGEL--KGKERFQPVVQGL----------------  295 (927)
Q Consensus       236 i~~la~sl~~~~~~~~~~vlelLaalc~~~~~-Gh~~VL~A-l~~~~~~--~e~~RF~~lv~~L----------------  295 (927)
                      ..++-.+++-+.--+...+|++|+.+|.-+.. |+.+++.. ++.|++-  --..|=..|+.-|                
T Consensus       379 f~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~I  458 (675)
T KOG0212|consen  379 FLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADI  458 (675)
T ss_pred             HHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHH
Confidence            44455566555556677789999999998755 76666666 4666642  1122222233321                


Q ss_pred             hccCCCHHHHHHHHHHHHHHH-cCchhHHHHHHHHHHHHHhChHHHHHHHhh--cCChhHHHHHHHHhhhhHhHHHHHHH
Q psy15122        296 MVKGNNEALRTACLQLINAIV-ATPDDLEFRLHLRNEIMRVGLYDLLDALEK--DASEDVSVQLKVFIEHKEEDYYEFIQ  372 (927)
Q Consensus       296 ~~~~~~~~~~~~~m~lIN~Lv-~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~--~~~~~L~~ql~~f~~~~~~D~~el~~  372 (927)
                      ....+|..|.....+.+|.++ .++|=.+.|-.||+- ....-.+++.-|=.  +.++.=..-+...-++ .+--..+..
T Consensus       459 Le~e~nl~FAstMV~~Ln~iLlTStELf~LR~~Lk~l-sn~es~~lF~cLy~sWchnPva~~SLClLtQn-YqhA~~liq  536 (675)
T KOG0212|consen  459 LEREENLKFASTMVQALNTILLTSTELFQLRNKLKDL-SNEESQNLFCCLYRSWCHNPVATLSLCLLTQN-YQHAYDLIQ  536 (675)
T ss_pred             HhccccchHHHHHHHHHHhhhcccHHHHHHHHHHHhc-cChhhhHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHH
Confidence            134678889988899999885 555645555444432 12333444444422  4555433333332222 222334555


Q ss_pred             hchhcccccCCHHHH
Q psy15122        373 RFDNVRMEIDDVNDC  387 (927)
Q Consensus       373 r~~~~~~d~~~~~~~  387 (927)
                      .|.++.+.++...++
T Consensus       537 ~fa~~eitvd~L~el  551 (675)
T KOG0212|consen  537 LFADVEITVDFLVEL  551 (675)
T ss_pred             HHhhhhhhHHHHHHH
Confidence            666666666655543

>KOG2391|consensus

Probab=92.18  E-value=6.6  Score=43.54  Aligned_cols=15  Identities=27%  Similarity=0.521  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHccc
Q psy15122        756 NMMTLYGDLAEFYTF  770 (927)
Q Consensus       756 ~~~~~~~~l~~yfgE  770 (927)
                      .+.-+++.+++-|..
T Consensus       297 ~~~~l~kq~l~~~A~  311 (365)
T KOG2391|consen  297 CTAPLYKQILECYAL  311 (365)
T ss_pred             ccchHHHHHHHhhhh
Confidence            333444444444443

>PHA03247 large tegument protein UL36; Provisional

Probab=91.15  E-value=0.35  Score=65.01  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCC---ChhHHHHHHHH
Q psy15122        209 QYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPN---KPTVMLEAVKV  257 (927)
Q Consensus       209 ~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~---~~~~~~~vlel  257 (927)
                      ....+..+.-||+-..|+++...  +...+.++..-++   ...++..+-||
T Consensus      1993 tvaA~~vl~eI~~LRl~~~~A~~--~gF~~F~rFVRHr~~dW~~s~~AaaEi 2042 (3151)
T PHA03247       1993 TLAAMCTVPLITRLQLALSDAQG--AGFRLFGRFVRHRQPAWRDSMAAAAEL 2042 (3151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--hchhhhhHhhhcCCCCchHHHHHHHHH
Confidence            45566667777777777777632  3444444433333   23344445555

>KOG4849|consensus

Probab=90.98  E-value=0.39  Score=52.58  Aligned_cols=23  Identities=26%  Similarity=0.120  Sum_probs=15.1

Q ss_pred             cccccccccccccccchhhhhch
Q psy15122        593 MYTDCHKNIINGKQACEEVKQSK  615 (927)
Q Consensus       593 ~v~~i~~~i~~v~~A~~el~~S~  615 (927)
                      .+-+++..|+++..|+.-||+|+
T Consensus       385 SaGDy~~AiETllTAI~lIKqSr  407 (498)
T KOG4849|consen  385 SAGDYKGAIETLLTAIQLIKQSR  407 (498)
T ss_pred             ccccchhHHHHHHHHHHHHHhhc
Confidence            35566666777777777776663

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=89.47  E-value=1.9  Score=50.31  Aligned_cols=47  Identities=13%  Similarity=0.160  Sum_probs=24.6

Q ss_pred             HHHHHHhhh-hhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhcc
Q psy15122        486 VEHLAEKSK-TEEDRRVEDLSAKLEEAIML-------RQEAEAKLVQAQKTLEDL  532 (927)
Q Consensus       486 l~~l~~~~~-~~~~k~~~el~~kle~~~~~-------~qe~ea~~~~le~~i~~l  532 (927)
                      ++..+++.+ ++.+.+.++|+++|++....       .+..++++.+++..+..|
T Consensus        62 FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L  116 (475)
T PRK13729         62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL  116 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            344555555 45555677777777664322       223345555555544444

>KOG3671|consensus

Probab=89.24  E-value=0.85  Score=52.52  Aligned_cols=7  Identities=14%  Similarity=0.259  Sum_probs=3.1

Q ss_pred             HHHHHHH
Q psy15122        619 KILELIL  625 (927)
Q Consensus       619 ~lL~~IL  625 (927)
                      .||.-|.
T Consensus       497 ~LmaqIR  503 (569)
T KOG3671|consen  497 ALMAQIR  503 (569)
T ss_pred             HHHHHHH
Confidence            3444444

>PHA03247 large tegument protein UL36; Provisional

Probab=88.76  E-value=0.68  Score=62.45  Aligned_cols=7  Identities=43%  Similarity=0.596  Sum_probs=2.6

Q ss_pred             HHHHhCh
Q psy15122        331 EIMRVGL  337 (927)
Q Consensus       331 Ef~~~GL  337 (927)
                      |+|..=|
T Consensus      2117 EYM~kTL 2123 (3151)
T PHA03247       2117 EYMHLTL 2123 (3151)
T ss_pred             HHHHHhH
Confidence            3333333

>KOG1925|consensus

Probab=84.36  E-value=1.1  Score=51.43  Aligned_cols=14  Identities=29%  Similarity=0.342  Sum_probs=9.4

Q ss_pred             ccchHHHHHHHHhc
Q psy15122        841 QQGVMDSLLEALQT  854 (927)
Q Consensus       841 ~~~v~D~Ll~~Lrs  854 (927)
                      +..-||+++..+-+
T Consensus       704 sh~~mk~~lK~~~~  717 (817)
T KOG1925|consen  704 SHASMKSLLKSRLE  717 (817)
T ss_pred             hHHHHHHHHHhhcc
Confidence            34568888876653

>smart00498 FH2 Formin Homology 2 Domain

Probab=83.79  E-value=10  Score=44.51  Aligned_cols=116  Identities=14%  Similarity=0.157  Sum_probs=83.5

Q ss_pred             hhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcch---hHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy15122        681 FGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANEND---KFLEIMEPFAKEVRQKITLLSNMSKNM  757 (927)
Q Consensus       681 f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D---~f~~~m~~F~~~a~~~~~~L~~~~~~~  757 (927)
                      |.+-+...-.++...++.|...+..+...+..+..-+......  ..+++   .|..-+..|...+.+.....+..-...
T Consensus       311 f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~  388 (432)
T smart00498      311 FIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERR  388 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444567788899999999999999998887755432211  12222   355566677777777777777778888


Q ss_pred             HHHHHHHHHHcccCCC--CCcccchhccHHHHHHHHHHHHHHH
Q psy15122        758 MTLYGDLAEFYTFDKN--IYTLEEFFTDIKTFKDSFYQAWQEN  798 (927)
Q Consensus       758 ~~~~~~l~~yfgEd~~--~~~~eefF~~~~~F~~~f~~a~~en  798 (927)
                      ....++..+||...+.  ...+..+|.....|...+...+++.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~  431 (432)
T smart00498      389 KQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL  431 (432)
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence            8889999999987552  3467778999999999999887653

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=83.71  E-value=3.7  Score=44.53  Aligned_cols=7  Identities=14%  Similarity=0.544  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q psy15122        499 RRVEDLS  505 (927)
Q Consensus       499 k~~~el~  505 (927)
                      +++..|+
T Consensus       122 qKIsALE  128 (253)
T PF05308_consen  122 QKISALE  128 (253)
T ss_pred             HHHHHHH
Confidence            3333333

>KOG0132|consensus

Probab=82.75  E-value=2.4  Score=51.35  Aligned_cols=9  Identities=22%  Similarity=0.575  Sum_probs=3.4

Q ss_pred             HHHHHHHhc
Q psy15122        366 DYYEFIQRF  374 (927)
Q Consensus       366 D~~el~~r~  374 (927)
                      |...+.+.|
T Consensus       437 dL~~~feef  445 (894)
T KOG0132|consen  437 DLANLFEEF  445 (894)
T ss_pred             HHHHHHHhc
Confidence            333333333

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=81.67  E-value=96  Score=34.80  Aligned_cols=189  Identities=18%  Similarity=0.236  Sum_probs=98.1

Q ss_pred             HHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHH
Q psy15122        137 IEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCI  216 (927)
Q Consensus       137 ~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCL  216 (927)
                      .++|..|.+.+.  +.-..+|..|...|++   .|+.+|+..-...|++.    +...+ +++ +.    .-+.-+.+++
T Consensus        46 ~~~Id~l~eK~~--~~Re~aL~~l~~~l~~---~~~~d~v~~~~~tL~~~----~~k~l-kkg-~~----~E~~lA~~~l  110 (309)
T PF05004_consen   46 KEAIDLLTEKSS--STREAALEALIRALSS---RYLPDFVEDRRETLLDA----LLKSL-KKG-KS----EEQALAARAL  110 (309)
T ss_pred             HHHHHHHHhcCH--HHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHH----HHHHh-ccC-CH----HHHHHHHHHH
Confidence            355666644332  2334678899999988   67778886655556553    22223 122 11    1233455555


Q ss_pred             HHHHhc---HhhHHHHhcchhHHHHHHHhc--CCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHH
Q psy15122        217 RAIMNN---TVGLKQMFGQKEALTIVARSL--DPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPV  291 (927)
Q Consensus       217 kaimN~---~~Gl~~vl~~~~~i~~la~sl--~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~l  291 (927)
                      -.++-+   ....+.++.  .....|...+  .+..+..+..++.-|+.+|++...+.+-+...|..+..+       ..
T Consensus       111 ~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~i-------f~  181 (309)
T PF05004_consen  111 ALLALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESI-------FL  181 (309)
T ss_pred             HHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH-------HH
Confidence            555444   122445544  3333344333  344566667778888888888655666666333332100       11


Q ss_pred             HHHHh--------ccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhh-cCChhHHHHHHH
Q psy15122        292 VQGLM--------VKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK-DASEDVSVQLKV  358 (927)
Q Consensus       292 v~~L~--------~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~-~~~~~L~~ql~~  358 (927)
                      +....        ....+..+.++.+.----|+...++..+.-++         .+.++.|.. .+++++.+++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~---------~~~~~~l~~lL~s~d~~VRiAA  248 (309)
T PF05004_consen  182 LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL---------EEALPALSELLDSDDVDVRIAA  248 (309)
T ss_pred             HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH---------HHHHHHHHHHhcCCCHHHHHHH
Confidence            11111        11234567777777776667666664443221         222333332 345577788765

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	927
3eg5_B	383	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		8e-78
1z2c_B	383	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		8e-77
2bnx_A	386	Crystal Structure Of The Dimeric Regulatory Domain		1e-73
3obv_A	327	Autoinhibited Formin Mdia1 Structure Length = 327		5e-69
3o4x_A	330	Crystal Structure Of Complex Between Amino And Carb		5e-69
2bap_B	317	Crystal Structure Of The N-Terminal Mdia1 Armadillo		1e-67
3obv_E	457	Autoinhibited Formin Mdia1 Structure Length = 457		1e-52
3o4x_E	467	Crystal Structure Of Complex Between Amino And Carb		2e-52
1v9d_A	340	Crystal Structure Of The Core Fh2 Domain Of Mouse M		8e-46
2f31_A	233	Crystal Structure Of The Autoinhibitory Switch In F		7e-43
2z6e_A	419	Crystal Structure Of Human Daam1 Fh2 Length = 419		2e-16
2j1d_G	483	Crystallization Of Hdaam1 C-Terminal Fragment Lengt		2e-16
4eah_A	402	Crystal Structure Of The Formin Homology 2 Domain O		8e-11
1y64_B	443	Bni1p Formin Homology 2 Domain Complexed With Atp-a		5e-07
1ux5_A	411	Crystal Structures Of A Formin Homology-2 Domain Re		7e-07
1ux4_A	410	Crystal Structures Of A Formin Homology-2 Domain Re		8e-07

>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 383

Iteration: 1
 Score =  288 bits (738), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 156/410 (38%), Positives = 245/410 (59%), Gaps = 36/410 (8%)
Query: 75  LEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFD 134
           L+ ++ EQ+   FE ML DMNL++EK++PLR + +  K++M+  +   +      K    
Sbjct: 7   LQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSR 66
Query: 135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPR 194
             + YIQ L +  L    + SC+ESLR++LT+HP+SWV  F  +   +     +  L   
Sbjct: 67  SAMMYIQEL-RSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGAEGLASL----LDILKRL 121
Query: 195 FPSRSRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLE 253
              +      YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++
Sbjct: 122 HDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181
Query: 254 AVKVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQL 311
           A K+L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQL
Sbjct: 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQL 240
Query: 312 INAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI 371
           INA++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++  
Sbjct: 241 INALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLK 300
Query: 372 QRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLL 431
            R D++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D              
Sbjct: 301 GRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE------------ 348
Query: 432 SILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                          R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D
Sbjct: 349 --------------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383

>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 383

Iteration: 1
 Score =  285 bits (729), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 244/410 (59%), Gaps = 36/410 (8%)
Query: 75  LEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFD 134
           L+ ++ EQ+   FE ML DMNL++EK++PLR + +  K++M+  +   +      K    
Sbjct: 7   LQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSR 66
Query: 135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPR 194
             + YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L   
Sbjct: 67  SAMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRL 121
Query: 195 FPSRSRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLE 253
              +      YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++
Sbjct: 122 HDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181
Query: 254 AVKVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQL 311
           A K+L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQL
Sbjct: 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQL 240
Query: 312 INAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI 371
           INA++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++  
Sbjct: 241 INALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLK 300
Query: 372 QRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLL 431
            R D++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D              
Sbjct: 301 GRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE------------ 348
Query: 432 SILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                          R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D
Sbjct: 349 --------------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383

>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of Mouse Diaphaneous-Related Formin (Drf), Mdia1 Length = 386

Iteration: 1
 Score =  274 bits (701), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/410 (36%), Positives = 242/410 (59%), Gaps = 37/410 (9%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
           YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L      +
Sbjct: 9   YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 63
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
                 YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A K+
Sbjct: 64  EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 123
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
           L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLINA+
Sbjct: 124 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 182
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
           +   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++   R D
Sbjct: 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 242
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
           ++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D                  
Sbjct: 243 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 286
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKT 495
                      R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D++ LV+ + +K+K 
Sbjct: 287 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVDQMIDKTKV 335
Query: 496 EE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLD 544
           E+ + +  +L  KL+  +  R E + ++ + +   E        EK+ LD
Sbjct: 336 EKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDALD 385

>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure Length = 327

Iteration: 1
 Score =  259 bits (662), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 214/352 (60%), Gaps = 36/352 (10%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
           YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L      +
Sbjct: 9   YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 63
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
                 YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A K+
Sbjct: 64  EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 123
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
           L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLINA+
Sbjct: 124 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 182
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
           +   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++   R D
Sbjct: 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 242
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
           ++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D                  
Sbjct: 243 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 286
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE 487
                      R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D++ LV+
Sbjct: 287 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVD 327

>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 330

Iteration: 1
 Score =  259 bits (662), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 214/352 (60%), Gaps = 36/352 (10%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
           YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L      +
Sbjct: 11  YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 65
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
                 YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A K+
Sbjct: 66  EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 125
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
           L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLINA+
Sbjct: 126 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 184
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
           +   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++   R D
Sbjct: 185 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 244
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
           ++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D                  
Sbjct: 245 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 288
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE 487
                      R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D++ LV+
Sbjct: 289 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVD 329

>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat Region And Dimerisation Domain In Complex With The Mdia1 Autoregulatory Domain (Dad) Length = 317

Iteration: 1
 Score =  254 bits (650), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/346 (39%), Positives = 209/346 (60%), Gaps = 36/346 (10%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
           YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L      +
Sbjct: 5   YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 59
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
                 YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A K+
Sbjct: 60  EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 119
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
           L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLINA+
Sbjct: 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 178
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
           +   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++   R D
Sbjct: 179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 238
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
           ++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D                  
Sbjct: 239 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 282
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                      R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D
Sbjct: 283 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 317

>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457

Iteration: 1
 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/255 (42%), Positives = 149/255 (58%), Gaps = 2/255 (0%)
Query: 601 IINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENK 660
           I++   ACEE+++S            +GNYMN+GSRN GAFGF I+FL KL  TK  + K
Sbjct: 188 IVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK 247
Query: 661 TTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNC 720
            TLLH+L +  E   PE LKF DEL HV++A+RVS + +Q S+ QM+  I ++E D+QN 
Sbjct: 248 MTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF 307
Query: 721 KQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEF 780
             A   +E DKF+E M  F K+ +++   L  M  NM TLY +L +++ FD    ++EEF
Sbjct: 308 PAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEF 365
Query: 781 FTDIKTFKDSFYQAWQENIKLREAEEKSIXXXXXXXXXXXXXXXXXXXXXXLIDMTTDQT 840
           F D+  F++ F QA +EN K RE EEK                        LIDM  +  
Sbjct: 366 FMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGD 425
Query: 841 QQGVMDSLLEALQTG 855
           + GVMDSLLEALQ+G
Sbjct: 426 ETGVMDSLLEALQSG 440

>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467

Iteration: 1
 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/255 (42%), Positives = 149/255 (58%), Gaps = 2/255 (0%)
Query: 601 IINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENK 660
           I++   ACEE+++S            +GNYMN+GSRN GAFGF I+FL KL  TK  + K
Sbjct: 207 IVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK 266
Query: 661 TTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNC 720
            TLLH+L +  E   PE LKF DEL HV++A+RVS + +Q S+ QM+  I ++E D+QN 
Sbjct: 267 MTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF 326
Query: 721 KQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEF 780
             A   +E DKF+E M  F K+ +++   L  M  NM TLY +L +++ FD    ++EEF
Sbjct: 327 PAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEF 384
Query: 781 FTDIKTFKDSFYQAWQENIKLREAEEKSIXXXXXXXXXXXXXXXXXXXXXXLIDMTTDQT 840
           F D+  F++ F QA +EN K RE EEK                        LIDM  +  
Sbjct: 385 FMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGD 444
Query: 841 QQGVMDSLLEALQTG 855
           + GVMDSLLEALQ+G
Sbjct: 445 ETGVMDSLLEALQSG 459

>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340

Iteration: 1
 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 130/207 (62%), Gaps = 2/207 (0%)
Query: 601 IINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENK 660
           I++   ACEE+++S            +GNYMN+GSRN GAFGF I+FL KL  TK  + K
Sbjct: 117 IVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK 176
Query: 661 TTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNC 720
            TLLH+L +  E   PE LKF DEL HV++A+RVS + +Q S+ QM+  I ++E D+QN 
Sbjct: 177 MTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF 236
Query: 721 KQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEF 780
             A   +E DKF+E M  F K+ +++   L  M  NM TLY +L +++ FD    ++EEF
Sbjct: 237 PAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEF 294
Query: 781 FTDIKTFKDSFYQAWQENIKLREAEEK 807
           F D+  F++ F QA +EN K RE EEK
Sbjct: 295 FMDLHNFRNMFLQAVKENQKRRETEEK 321

>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin Mdia1; The DidDAD COMPLEX Length = 233

Iteration: 1
 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 149/235 (63%), Gaps = 9/235 (3%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
           YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L      +
Sbjct: 5   YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 59
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
                 YD R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A K+
Sbjct: 60  EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 119
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
           L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLINA+
Sbjct: 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 178
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF 370
           +   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++ 
Sbjct: 179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDL 233

>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 3/195 (1%)
Query: 605 KQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKD-IENKTTL 663
           +   EEV +S             GNYMN G R G A+GF+I+ L K++ TK  I+   TL
Sbjct: 205 RSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITL 263
Query: 664 LHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQA 723
           LHYL+  +E K+P  L   +EL  + +AA+V+   +   I  + + +K +ET+++  K  
Sbjct: 264 LHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQ 323
Query: 724 PVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTD 783
           P     DKF+ ++  F        + + ++      L+    + +  +      +EFF  
Sbjct: 324 P-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGI 382
Query: 784 IKTFKDSFYQAWQEN 798
              F  +  +A QEN
Sbjct: 383 FDQFLQAVSEAKQEN 397

>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 3/195 (1%)
Query: 605 KQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKD-IENKTTL 663
           +   EEV +S             GNYMN G R G A+GF+I+ L K++ TK  I+   TL
Sbjct: 203 RSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITL 261
Query: 664 LHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQA 723
           LHYL+  +E K+P  L   +EL  + +AA+V+   +   I  + + +K +ET+++  K  
Sbjct: 262 LHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQ 321
Query: 724 PVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTD 783
           P     DKF+ ++  F        + + ++      L+    + +  +      +EFF  
Sbjct: 322 P-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGI 380
Query: 784 IKTFKDSFYQAWQEN 798
              F  +  +A QEN
Sbjct: 381 FDQFLQAVSEAKQEN 395

>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 607 ACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHY 666
           A   VK S            +GNYMNS S+ G  +GF++  L  L  TK  + K TLLH+
Sbjct: 201 ASASVKSSQKLKQMLEIILALGNYMNS-SKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHF 259
Query: 667 LVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQM 706
           +  T+++K+PE   F  EL  V++AA VS + +   ++++
Sbjct: 260 IALTVKEKYPELANFWQELHFVEKAAAVSLENVLLDVKEL 299

>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin Length = 443

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)
Query: 627 MGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELL 686
           +GN+MN  S+   A GF+++ L +L+  KD  N  T L+Y+   +   +P    F  EL 
Sbjct: 249 VGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELE 306
Query: 687 HVDRAARVSTDVIQNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVR 744
            V    +VS + + N  +    +I N+E   +I N   +   +  DK L    P   E R
Sbjct: 307 PVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEAR 366
Query: 745 QKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 803
           +K  LL +  K  +  +  L   Y  D  + +    FF     F + + +A  +N+   E
Sbjct: 367 KKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE 426
Query: 804 AE 805
            E
Sbjct: 427 EE 428

>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Flexibly Tethered Dimer Architecture Length = 411

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)
Query: 627 MGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELL 686
           +GN+MN  S+   A GF+++ L +L+  KD  N  T L+Y+   +   +P    F  EL 
Sbjct: 226 VGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELE 283
Query: 687 HVDRAARVSTDVIQNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVR 744
            V    +VS + + N  +    +I N+E   +I N   +   +  DK L    P   E R
Sbjct: 284 PVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEAR 343
Query: 745 QKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 803
           +K  LL +  K  +  +  L   Y  D  + +    FF     F + + +A  +N+   E
Sbjct: 344 KKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE 403
Query: 804 AE 805
            E
Sbjct: 404 EE 405

>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A Tethered-Dimer Architecture Length = 410

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)
Query: 627 MGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELL 686
           +GN+MN  S+   A GF+++ L +L+  KD  N  T L+Y+   +   +P    F  EL 
Sbjct: 220 VGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELE 277
Query: 687 HVDRAARVSTDVIQNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVR 744
            V    +VS + + N  +    +I N+E   +I N   +   +  DK L    P   E R
Sbjct: 278 PVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEAR 337
Query: 745 QKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 803
           +K  LL +  K  +  +  L   Y  D  + +    FF     F + + +A  +N+   E
Sbjct: 338 KKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE 397
Query: 804 AE 805
            E
Sbjct: 398 EE 399

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	927
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	8e-87
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	2e-09
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	3e-79
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	2e-72
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	9e-71
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	1e-70
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	7e-61
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	1e-52
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	3e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-06
1ei8_A	29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	1e-07
1ei8_A	29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	2e-06
1ei8_A	29	Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP-	3e-04
1cag_A	30	Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB:	3e-07
1cag_A	30	Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB:	2e-06
1cag_A	30	Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB:	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-06
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-05
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-07
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-05
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	7e-07
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	1e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-04
3pod_A	26	MBL collagen-like peptide; collagen peptide, compl	7e-07
3pon_A	29	MBL collagen-like peptide; collagen peptide, MBL c	8e-07
3pon_A	29	MBL collagen-like peptide; collagen peptide, MBL c	3e-05
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	8e-07
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	2e-05
3a0m_A	27	Collagen-like peptide; triple-helix, model peptide	3e-06
3a0m_A	27	Collagen-like peptide; triple-helix, model peptide	2e-05
3a0m_A	27	Collagen-like peptide; triple-helix, model peptide	2e-04
3a1h_A	27	Collagen-like peptide; collagen helix, HOST-guest	5e-06
3a1h_A	27	Collagen-like peptide; collagen helix, HOST-guest	1e-05
3a1h_A	27	Collagen-like peptide; collagen helix, HOST-guest	2e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	9e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	9e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	2e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	6e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	7e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	8e-04
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	6e-06
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	6e-06
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	1e-05
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	1e-04
4dmu_A	87	Collagen III derived triple-helical peptide; dinuc	7e-04
3adm_A	27	Collagen-like peptide; triple helix, model peptide	7e-06
3adm_A	27	Collagen-like peptide; triple helix, model peptide	1e-05
3adm_A	27	Collagen-like peptide; triple helix, model peptide	2e-04
1qsu_A	30	Protein ((Pro-HYP-Gly)4- Glu-Lys-Gly(Pro-HYP- Gly)	8e-06
3ah9_A	27	Collagen-like peptide; triple helix, model peptide	1e-05
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	1e-05
3dmw_A	42	Collagen alpha-1(III) chain; collagen III, cystine	3e-04
3abn_A	27	Collagen-like peptide; collagen-helix, structural	1e-05
3abn_A	27	Collagen-like peptide; collagen-helix, structural	2e-05
3abn_A	27	Collagen-like peptide; collagen-helix, structural	2e-04
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	2e-05
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	8e-05
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	2e-05
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	6e-04
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	7e-04
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	9e-04
2f6a_E	30	Collagen; CNA, mscramm, adhesion, ECM, cell adhesi	2e-05
2f6a_E	30	Collagen; CNA, mscramm, adhesion, ECM, cell adhesi	3e-05
2y5t_F	38	C1; immune system, antibody, rheumatoid arthritis;	3e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
2v8f_C	26	MDIA1, profilin IIA; alternative splicing, protein	1e-04
2v8f_C	26	MDIA1, profilin IIA; alternative splicing, protein	4e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-04
4dmt_A	32	Collagen III derived peptide; collagen triple heli	1e-04
3b0s_A	27	Collagen-like peptide; triple helix, structural pr	1e-04
2y5t_E	34	C1; immune system, antibody, rheumatoid arthritis;	2e-04
1nay_A	56	CCP4, collagen-like peptide; collagen assembly, st	3e-04
3u29_A	26	Triple helical peptide; triple helix, biosynthetic	3e-04
3t4f_A	26	Collagen mimetic peptide; triple helix, biosynthet	3e-04
1x1k_F	30	HOST-guest peptide (Pro-Pro-Gly)4-(Pro-allohyp- Gl	4e-04
1bkv_A	30	T3-785; collagen, hydroxyproline, hydrogen bonding	5e-04
2g66_A	31	Collagen; 3(S)hydroxyproline, 4(R)hydroxyproline,	7e-04

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} PDB: 1z2c_B* Length = 383

 Score =  282 bits (721), Expect = 8e-87
 Identities = 155/412 (37%), Positives = 244/412 (59%), Gaps = 34/412 (8%)

Query: 72  ENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKS 131
              L+ ++ EQ+   FE ML DMNL++EK++PLR + +  K++M+  +   +      K 
Sbjct: 4   AQSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKE 63

Query: 132 KFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFL 191
                + YIQ L +  L    + SC+ESLR++LT+HP+SWV  F  +   +         
Sbjct: 64  SSRSAMMYIQEL-RSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGAEGLASLLDILKRLH 122

Query: 192 YPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVM 251
             +  +    DSR    Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M
Sbjct: 123 DEKEETSGNYDSR---NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179

Query: 252 LEAVKVLAAVCLI--PPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACL 309
           ++A K+L+A+C++  P D +++V++A+T   E+   ERFQP++ GL   G + AL+  CL
Sbjct: 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCL 238

Query: 310 QLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYE 369
           QLINA++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++
Sbjct: 239 QLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFD 298

Query: 370 FIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPY 429
              R D++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D            
Sbjct: 299 LKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEA--------- 349

Query: 430 LLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
                            R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D
Sbjct: 350 -----------------RPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} PDB: 1z2c_B* Length = 383

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 15/164 (9%)

Query: 8   EEQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYE 67
           +     L+ ++ EQ+   FE ML DMNL++EK++PLR + +  K++M+  +   +     
Sbjct: 1   DPTAQSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMN 60

Query: 68  NKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKE---PLRRQPLANKKKMLLMHYKGTV 124
            K+        +     Q+    L DM+L    +     L   P++  +       +G  
Sbjct: 61  QKESSR-----SAMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGA---EGLA 112

Query: 125 TSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHP 168
           +  +   +    +   +  +         +  I  L+  + N  
Sbjct: 113 SLLDILKR----LHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF 152

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457

 Score =  264 bits (675), Expect = 3e-79
 Identities = 123/267 (46%), Positives = 174/267 (65%), Gaps = 2/267 (0%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
            E   +    I++   ACEE+++S+  + +LEL LL+GNYMN+GSRN GAFGF I+FL K
Sbjct: 178 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK 237

Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
           L  TK  + K TLLH+L +  E   PE LKF DEL HV++A+RVS + +Q S+ QM+  I
Sbjct: 238 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQI 297

Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
            ++E D+QN   A   +E DKF+E M  F K+ +++   L  M  NM TLY +L +++ F
Sbjct: 298 ADVERDVQNFPAAT--DEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVF 355

Query: 771 DKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKK 830
           D    ++EEFF D+  F++ F QA +EN K RE EEK  R + A+EKAE E+ +K  +++
Sbjct: 356 DPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKRE 415

Query: 831 ALIDMTTDQTQQGVMDSLLEALQTGRP 857
            LIDM  +  + GVMDSLLEALQ+G  
Sbjct: 416 QLIDMNAEGDETGVMDSLLEALQSGAA 442

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score =  245 bits (628), Expect = 2e-72
 Identities = 77/323 (23%), Positives = 143/323 (44%), Gaps = 31/323 (9%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
            E   +    +   +   EEV +S  L ++LE++L  GNYMN G R G A+GF+I+ L K
Sbjct: 189 AERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNK 247

Query: 651 LSSTKD-IENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENN 709
           ++ TK  I+   TLLHYL+  +E K+P  L   +EL  + +AA+V+   +   I  + + 
Sbjct: 248 IADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSG 307

Query: 710 IKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYT 769
           +K +ET+++  K  P     DKF+ ++  F        + + ++      L+    + + 
Sbjct: 308 LKAVETELEYQKSQP-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFG 366

Query: 770 FDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARK 829
            +      +EFF     F  +  +A QEN  +R+ +E+     E R + E + K++  R+
Sbjct: 367 EEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEE----EERRARMEAQLKEQRERE 422

Query: 830 KALIDMTTDQTQQGVMDSLLEALQTGRPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKR 889
           + +     +  + G  D L+ AL++G                            +   K 
Sbjct: 423 RKMRKAKENSEESGEFDDLVSALRSGEVF------------------------DKDLSKL 458

Query: 890 QNDRPMGAERRAQLNRSRSRNGI 912
           + +R     +    +R R    +
Sbjct: 459 KRNRKRITNQMTDSSRERPITKL 481

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340

 Score =  236 bits (605), Expect = 9e-71
 Identities = 105/235 (44%), Positives = 150/235 (63%), Gaps = 2/235 (0%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
            E   +    I++   ACEE+++S+  + +LEL LL+GNYMN+GSRN GAFGF I+FL K
Sbjct: 107 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK 166

Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
           L  TK  + K TLLH+L +  E   PE LKF DEL HV++A+RVS + +Q S+ QM+  I
Sbjct: 167 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQI 226

Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
            ++E D+Q        +E DKF+E M  F K+ +++   L  M  NM TLY +L +++ F
Sbjct: 227 ADVERDVQ--NFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVF 284

Query: 771 DKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDK 825
           D    ++EEFF D+  F++ F QA +EN K RE EEK  R + A+EKAE E+ +K
Sbjct: 285 DPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Length = 386

 Score =  238 bits (607), Expect = 1e-70
 Identities = 149/412 (36%), Positives = 241/412 (58%), Gaps = 35/412 (8%)

Query: 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF 195
            + YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +           + 
Sbjct: 6   AMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKE 64

Query: 196 PSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAV 255
            +    DSR    Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A 
Sbjct: 65  ETSGNYDSR---NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 121

Query: 256 KVLAAVCLI--PPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLIN 313
           K+L+A+C++  P D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLIN
Sbjct: 122 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLIN 180

Query: 314 AIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQR 373
           A++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++   R
Sbjct: 181 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR 240

Query: 374 FDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSI 433
            D++RME+DD  + F+ + N V DS  EP+ LSILQHLL +R+D                
Sbjct: 241 LDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQ---------- 290

Query: 434 LQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKS 493
                           YYKL+EECVSQIVLH+ G DPDF+  R  Q+D++ LV+ + +K+
Sbjct: 291 ----------------YYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVDQMIDKT 333

Query: 494 KTEE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLD 544
           K E+ + +  +L  KL+  +  R E + ++ + +   E        EK+ LD
Sbjct: 334 KVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDALD 385

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411

 Score =  212 bits (540), Expect = 7e-61
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
              Y +    +    +A   +++S  L  +  +IL +GN+MN  S+   A GF+++ L +
Sbjct: 190 EREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQR 247

Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
           L+  KD  N  T L+Y+   +   +P    F  EL  V    +VS + + N  +    +I
Sbjct: 248 LTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSI 307

Query: 711 KNLETDIQNCKQAPVAN--ENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFY 768
            N+E  ++    +  +     DK L    P   E R+K  LL +  K  +  +  L   Y
Sbjct: 308 VNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTY 367

Query: 769 TFD-KNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIR 810
             D  + +    FF     F + + +A  +N+   E E   I+
Sbjct: 368 GEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEERLYIK 410

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Length = 233

 Score =  183 bits (464), Expect = 1e-52
 Identities = 88/237 (37%), Positives = 149/237 (62%), Gaps = 7/237 (2%)

Query: 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF 195
            + YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +           + 
Sbjct: 2   AMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKE 60

Query: 196 PSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAV 255
            +    DSR    Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A 
Sbjct: 61  ETSGNYDSR---NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 117

Query: 256 KVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLIN 313
           K+L+A+C++P   D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLIN
Sbjct: 118 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLIN 176

Query: 314 AIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF 370
           A++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++ 
Sbjct: 177 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDL 233

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Length = 339

 Score =  101 bits (251), Expect = 3e-23
 Identities = 44/287 (15%), Positives = 90/287 (31%), Gaps = 30/287 (10%)

Query: 84  NQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYL 143
           +  + D    +    E  E    +    +K  L++  + +V       K           
Sbjct: 78  SGYYLDTELSLEEQREMLEGFYEEISKGRKPTLILRTQLSVRVNAILEKLYSS------- 130

Query: 144 SQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDS 203
                S  ++   + SL+          V EFV  +        ++ L     +   N  
Sbjct: 131 -----SGPELRRSLFSLKQIFQEDK-DLVPEFVHSEG-------LSCLIRVGAAADHN-- 175

Query: 204 RYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCL 263
                Q   +R +  +M    G+  +    + +  +          V+  A+K+L     
Sbjct: 176 ----YQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVE 231

Query: 264 IPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGN-NEALRTACLQLINAIVATPDDL 322
              +     I+A+       G   +  +V  L  K   +  L    + LIN  +A   D 
Sbjct: 232 YSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQ 291

Query: 323 EFRLHLRNEIMRVGLYDLLDAL--EKDASEDVSVQLKVFIEH-KEED 366
           +    + + + + G+  L+           D+  QL ++    K ED
Sbjct: 292 DSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYENALKLED 338

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.9 bits (209), Expect = 8e-17
 Identities = 91/596 (15%), Positives = 188/596 (31%), Gaps = 176/596 (29%)

Query: 1   MDLQDILEEQENMLEK------------------------LNPEQLNQKF-EDMLND--- 32
            D +D+ +  +++L K                           E++ QKF E++L     
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 33  --MN-LSDEKKEPLR--------RQPLANKKKMLLMHYKGTVTSYENKKQ-ENMLEKLNP 80
             M+ +  E+++P          R  L N  ++     K  V+  +   +    L +L P
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALLELRP 149

Query: 81  EQ--------------------LNQKFEDMLND----MNLSDEKKEPLRRQPLANKKKML 116
            +                    L+ K +  ++     +NL +        + L       
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----- 204

Query: 117 LMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNE-- 174
           L++            + D       + S+ + S N     I S++  L     S   E  
Sbjct: 205 LLY------------QIDPN-----WTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENC 246

Query: 175 -FVLQD--NKNFRKYPIAFLYPRFPSR----SRNDSRYDRVQYECVRCIRAIMNNTVGLK 227
             VL +  N        AF       +    +R     D +         ++ ++++   
Sbjct: 247 LLVLLNVQNAKAWN---AFN---LSCKILLTTRFKQVTDFLSAA-TTTHISLDHHSMT-- 297

Query: 228 QMFGQKEALTIVARSLD--PNK-PTVMLE----AVKVLAAVCLIPPD--------GHDKV 272
                 E  +++ + LD  P   P  +L      + ++A                  DK+
Sbjct: 298 --LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 273 IKAITMSGE-LKGKERFQPVVQGLMVKGNNEALRTACLQLI--NAIVATPDDLEFRLHLR 329
              I  S   L+  E ++ +   L V   +  + T  L LI  + I +    +  +LH  
Sbjct: 356 TTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 330 ------NEIMRVGLYDLLDALEKDASEDVSVQLKVFIEH---------------KEEDY- 367
                  +   + +  +   L+     + ++  +  ++H                 + Y 
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 368 YEFI----------QRFDNVRMEIDDVNDCF--ETVRNMVMDSACEPYLLSILQHLL--- 412
           Y  I          +R    RM   D    F  + +R+          +L+ LQ L    
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 413 -FIRDDQNMV--MDSACEPYLLSILQHLLFIRDDQYVRLA----YYKLLEECVSQI 461
            +I D+      + +A   +L  I ++L+  +    +R+A       + EE   Q+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 3e-13
 Identities = 76/509 (14%), Positives = 154/509 (30%), Gaps = 138/509 (27%)

Query: 119 HYKGTVTSYENKSKFDKPIEYIQYLSQPELS-------------VNKMYSCIESLRIALT 165
            YK  ++ +E+    +   + +Q + +  LS             V+       +L     
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---- 72

Query: 166 NHPLSWVNEFV---LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNN 222
           +     V +FV   L+ N     Y   FL     +  R  S      Y   R      + 
Sbjct: 73  SKQEEMVQKFVEEVLRIN-----YK--FLMSPIKTEQRQPSM-MTRMYIEQR------DR 118

Query: 223 TVGLKQMFG--------QKEALTIVARSLDPNKPTV---MLEAVK-VLAA-VCLIPPDGH 269
                Q+F             L      L P K  +   +L + K  +A  VCL      
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL------ 172

Query: 270 DKVIKAITMSGE---LKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPD---DLE 323
              ++   M  +   L  K    P  + ++     E L+    Q+     +  D   +++
Sbjct: 173 SYKVQ-CKMDFKIFWLNLKNCNSP--ETVL-----EMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 324 FRLH-LRNEIMRV--------GLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRF 374
            R+H ++ E+ R+         L  LL+     A    ++  K+ +  + +   +F+   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 375 DNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACE--PYLLS 432
               + +D  +                  + S+L  L ++      +        P  LS
Sbjct: 285 TTTHISLDHHSMTLT-----------PDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLS 331

Query: 433 ILQHLL---FIRDDQYVRLAYYKL---LEECVSQIVLHRGGCDP-DFRSSRRFQL----- 480
           I+   +       D +  +   KL   +E  ++ +       +P ++R  + F       
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYR--KMFDRLSVFP 382

Query: 481 --------------------DVQPLVEHLAEKSKTEEDR-----RVEDLSAKLEEAIMLR 515
                               DV  +V  L + S  E+        +  +  +L+  +   
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 516 QEAEAKLVQAQKTLEDLSSGRPVEKNRLD 544
                 +V      +   S   +    LD
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLI-PPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 7e-12
 Identities = 48/324 (14%), Positives = 95/324 (29%), Gaps = 98/324 (30%)

Query: 9   EQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPL------ANKKKMLLM--HYK 60
             ++    L P+++       L+     D  +E L   P        + +  L    ++K
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 61  GTVTSYENKKQENM----LEKLNPEQLNQKFEDML---NDMNLS----------DEKKEP 103
                    K   +    L  L P +  + F+ +       ++             K + 
Sbjct: 349 ----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 104 ------LRRQPLANKKK--------MLLMHYKGT-----------VTSYENKSKFD---- 134
                 L +  L  K+          + +  K             V  Y     FD    
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 135 -KPIE------YIQY-LSQPELS-----VNKMY---SCIES-LRIALT--NHPLSWVNEF 175
             P        +I + L   E          ++     +E  +R   T  N   S +N  
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-- 522

Query: 176 VLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEA 235
            LQ  K ++ Y I            ND +Y+R+       + AI++    +++     + 
Sbjct: 523 TLQQLKFYKPY-I----------CDNDPKYERL-------VNAILDFLPKIEENLICSKY 564

Query: 236 LTIVARSLDPNKPTVMLEAVKVLA 259
             ++  +L      +  EA K + 
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 5e-05
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 57/280 (20%)

Query: 646 NFLTKLSSTKDIE------NKTTLLHYLVDTIEQKFPECLK-FGDELLHVDRAARVSTDV 698
           +    + S ++I+      +  +    L  T+  K  E ++ F +E+L ++         
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN------YKF 93

Query: 699 IQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNM- 757
           + + I+  E    ++ T +   ++  + N+N  F +      +   +    L  +     
Sbjct: 94  LMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 758 MTLYG---------------DLAEFYTFDKNIY--TLEEFFTD---IKTFKDSFYQAWQE 797
           + + G                       D  I+   L+   +    ++  +   YQ    
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 798 NIKLREAEEKSIRVREAREKAENEKKDKAARK---KALIDMTTDQTQQGVMDS-LLEA-- 851
                   + S  ++      + E +     K     L+ +        V ++    A  
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--L----NVQNAKAWNAFN 263

Query: 852 -----LQTGRPKKTGSSIKSVGCPSHSAL-QTGSAFTREQ 885
                L T R K+    + S    +H +L       T ++
Sbjct: 264 LSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDE 302

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 9e-05
 Identities = 76/520 (14%), Positives = 144/520 (27%), Gaps = 177/520 (34%)

Query: 471 DFRSSRRFQLDVQPLVEHLAEKSKTEED-RRVEDL------SAKLEEAIMLRQEAEAKLV 523
           DF +    Q   + ++    +      D + V+D+        +++  IM +        
Sbjct: 8   DFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS---- 62

Query: 524 QAQKTLEDL-SSGRPVEKNRLDEVKAQ----VAAGIPTGPKGGPPPPPPPPGGMGPPPPP 578
              +    L S    + +  ++EV       + + I T  +                   
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------------------ 104

Query: 579 MPGMPGPPPPPMPEMYTDCHKNIINGKQACEE--VKQSKKLAKI----LEL-----ILLM 627
                   P  M  MY +    + N  Q   +  V + +   K+    LEL     +L+ 
Sbjct: 105 --------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 628 GNYMNSGS----------RNGG---AFGFEINFLT--KLSSTKDIENKTTLLHYLVDTIE 672
           G  +  GS           +        F+I +L     +S + +      L Y +D   
Sbjct: 157 G--V-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--- 210

Query: 673 QKFPECLKFGDELLHVDRAARVSTDVIQNSIR------QMEN------NIKNLET----D 716
                               ++    IQ  +R        EN      N++N +     +
Sbjct: 211 -------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 717 IQNCK------QAPVAN-------------ENDKFL---EIMEPFAKEVRQKITLLSN-M 753
           +  CK         V +              +   L   E+     K +  +   L   +
Sbjct: 264 LS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 754 SKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVRE 813
                     +AE          + +       +K           KL    E S+    
Sbjct: 323 LTTNPRRLSIIAES---------IRDGLATWDNWKHVNCD------KLTTIIESSL---N 364

Query: 814 AREKAENEK--KDKAA-RKKALI----------DMTTDQTQQGVMD-----SLLEALQTG 855
             E AE  K     +     A I          D+        V++     SL+E     
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-VVNKLHKYSLVE----K 419

Query: 856 RPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKRQNDRPM 895
           +PK++  SI        S +        E + K +N+  +
Sbjct: 420 QPKESTISI-------PS-IY------LELKVKLENEYAL 445

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 552 AGIPTGPKGGPP--PPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           A I   P   PP    PPPP G G PPP M G P    PPM 
Sbjct: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 15/47 (31%), Positives = 15/47 (31%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
              AA           P   PPG  GPPPP   G P P     P   
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 10/37 (27%), Positives = 11/37 (29%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           P G              +   P   P   G PPPPM 
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 15/44 (34%), Positives = 16/44 (36%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           A +A      P G   PPPP   G  PP    P     PP   P
Sbjct: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 16/37 (43%), Positives = 16/37 (43%)

Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           G P     GPPP   PP G     PP  G P   PPP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP 218

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPM-----PGMPGPPPPPMP 591
           +  VAA            P   P G G PPPPM     P     PPP M 
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 15/41 (36%), Positives = 16/41 (39%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           A       +GGPPPP            P PGM  P  PPM 
Sbjct: 164 APTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 9/37 (24%), Positives = 9/37 (24%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
                             G P    PG  GPPPP   
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 8/41 (19%), Positives = 10/41 (24%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           +  + T    G                P    PG   PP P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP 178

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 553 GIPTGPKGGPPPPPP--PPGGMGPPPPPMPGMPGPPPPPMPEM 593
             P G  G PPP     PP GM  PPP M    GPP    P  
Sbjct: 167 QYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 7/41 (17%), Positives = 9/41 (21%)

Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
           G P+     P                + G P   PP     
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 6/37 (16%), Positives = 6/37 (16%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
             G                P   P      PPP    
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 9/44 (20%), Positives = 10/44 (22%), Gaps = 1/44 (2%)

Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGP-PPPPMPGMPGPPPPPMP 591
           Q    +              P    P    P P M    PPP  
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 21/124 (16%), Positives = 32/124 (25%), Gaps = 25/124 (20%)

Query: 495 TEEDRRVEDLSAKLEEA--------IMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEV 546
            +E R+++  ++K  E         ++LR E    +       +D    R          
Sbjct: 45  CDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGP 104

Query: 547 KAQVAAG--IPTGPK---------------GGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
               AAG  IP G                 GGP      P G G                
Sbjct: 105 GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGA 164

Query: 590 MPEM 593
             + 
Sbjct: 165 PTQY 168

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 6/37 (16%), Positives = 7/37 (18%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
             GP      P                + G P    P
Sbjct: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPP 170

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 13/40 (32%), Positives = 13/40 (32%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
           P     G PPP       G  PP  P M  PP    P   
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGM 215

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 548 AQVAAGIPTGPKGGPPPPPPP---PGGMGPPPPPMPGMPGPPPPPMPEM 593
                G+   P G  PP  PP   P G G P    P    PPPP M  +
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 19/28 (67%), Positives = 19/28 (67%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           PP PP PPG  GP PP  PG PGPP PP
Sbjct: 1   PPGPPGPPGPPGPGPPGPPGPPGPPGPP 28

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 18/27 (66%)

Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           PP PPG  GPP P  PG PGPP PP P
Sbjct: 1   PPGPPGPPGPPGPGPPGPPGPPGPPGP 27

>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Length = 29

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 555 PTGPKGGPPPPPP-PPGGMGPPPPPMP 580
           P GP G P PP P PPG  GPP PP P
Sbjct: 1   PPGPPGPPGPPGPGPPGPPGPPGPPGP 27

>1cag_A Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB: 1cgd_A Length = 30

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 20/30 (66%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           PP PP PPG  GPP PP P  PGPP PP P
Sbjct: 1   PPGPPGPPGPPGPPAPPGP--PGPPGPPGP 28

>1cag_A Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB: 1cgd_A Length = 30

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           GPP PP PPG   PP PP P  PGPP PP
Sbjct: 3   GPPGPPGPPGPPAPPGPPGP--PGPPGPP 29

>1cag_A Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB: 1cgd_A Length = 30

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 19/32 (59%), Positives = 19/32 (59%), Gaps = 6/32 (18%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
           P GP G P PP PP    GPP PP P  PGPP
Sbjct: 4   PPGPPGPPGPPAPP----GPPGPPGP--PGPP 29

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  G        G  GP  PP   G+PGP  P 
Sbjct: 446 NNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPA 483

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P G  G  GPP      G  G   P   PG  G P P  P
Sbjct: 443 PDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGP 482

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           PTGP G  GP  PP P G  G        G PGP  PP
Sbjct: 521 PTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPP 558

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G        G  GPP PP + G PG    P
Sbjct: 290 PPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLP 327

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GP  PP PPG  G P    +PG  G     
Sbjct: 299 KRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVM 336

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GPKG  GP   P P G  GP     +PG+ GP  PP
Sbjct: 179 APGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPP 216

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P G +G  GPP      G  GP       G PGP      
Sbjct: 503 PAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGE 542

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
            TGP G  GPP PP   G  G P  P  PG  G P P   
Sbjct: 44  QTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGA 83

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G +G  GPP P    G  G   P   PG  GPP  P
Sbjct: 524 PIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIP 561

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P GP G  GPP PP   G  G   P    G  G       
Sbjct: 716 PPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGA 755

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G P P  P G  G P    + G  G P P 
Sbjct: 467 PAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPA 504

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P G +G  G    P   G  G   P    G  GP     P
Sbjct: 314 PPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGP 353

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G  G  G P P    G  GPP    + G  G   P  P
Sbjct: 431 NVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGP 470

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G P     PG  G        G  G   P 
Sbjct: 311 PPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPA 348

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP G  GP  P  P G  GPP P    G  GP     P
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGP 701

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
           P GP G  GPP P    G  GP     P  M G PG      P
Sbjct: 674 PQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGP 716

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G      P G  GP  PP +PG  G    P
Sbjct: 533 PPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVP 570

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  G   P  P G  GP      PG  G   PP
Sbjct: 680 AAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPP 717

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP+G  GP      PG  G   PP   G+ GPP PP
Sbjct: 692 PAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPP 729

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G +G  GP     P G +GP  P    G+ G    P  
Sbjct: 890 KLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGD 929

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G     G   P  P G +G   PP  PG PGP    
Sbjct: 146 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEL 186

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G      P G  GP      PG PG   P 
Sbjct: 332 VAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPR 369

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  G   P  PPG  G P P    G  G P   
Sbjct: 455 LQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGER 492

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G KG  G   P  P G +G   PP   G  GP  P 
Sbjct: 659 ERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPR 696

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP G  GPP  P  PG  G   P   PG  GP  P 
Sbjct: 164 PAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPR 201

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P GP+G  G    P P G  G P  P   G  G       
Sbjct: 401 PAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGA 440

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  G   P  PPG  G        G  G P P 
Sbjct: 518 AAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPA 555

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
           P G KG  G   P   PG  GPP       + G+PG     
Sbjct: 536 PDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEK 576

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P G +G  G P  P   G  G      + G PG P     
Sbjct: 80  PQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGE 119

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  GP     PPG +G   P    G  GP    
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMT 705

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G KG  G P      G  GP       G  GP  P  P
Sbjct: 128 TPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGP 167

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            AG+P G KG  G P      G  G      +PG  G P P 
Sbjct: 566 VAGVP-GGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPA 606

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G KG  G P    PPG +GP  P   PG  G    P P
Sbjct: 860 QPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGP 899

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G      PPG  G        G  GPP   
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQ 474

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 6/41 (14%)

Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G     G        G  G P P    G  GPP   
Sbjct: 416 PKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQ 456

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GP  P    G +G P P    G PG P   
Sbjct: 392 IDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEK 429

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 6/43 (13%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
             GP G  GPP     PG  G P       + G  G      P
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGP 347

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G +G  GP  P    G  GPP P    G  G   P 
Sbjct: 512 PPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPA 549

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GP       G +GP  P    G  GPP  P
Sbjct: 140 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFP 177

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  GPP     PG  GP      PG  G     
Sbjct: 461 EKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEF 498

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  G P  P  PG  G P P    G PG P  P
Sbjct: 56  PPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLP 93

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP G  G      P G  GP       G  GP    
Sbjct: 725 PPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFV 762

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G +G  GP  P    G  G        G+PGP    
Sbjct: 470 PPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGAR 507

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
             G  G  G    P P G  GPP    PP   G PG    P
Sbjct: 800 ERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAP 840

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G KG  G       PG  G       PG+ G     
Sbjct: 425 KPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEK 462

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  G    P P GG G        G  GP    
Sbjct: 590 RDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGAR 627

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G KG  G        G  G P     PG PG    P
Sbjct: 92  LPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTP 129

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G    P   G +G P P  + G PG   PP
Sbjct: 791 FLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPP 828

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            +G KG     G P PP P G  G        G  GPP PP
Sbjct: 275 ESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPP 315

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P GP G  GP   P   G  G P     PG+PGP   P P
Sbjct: 212 PVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGP 251

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G    P P G  G P  P +PG  G     
Sbjct: 65  HPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHN 102

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 553 GIPTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           G+P G +G  G P      G  GP      PG  GPP   
Sbjct: 793 GLP-GSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNV 831

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G  G  G    P   G  G P     PG  G P   
Sbjct: 827 PPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHK 864

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GP     PPG  GPP     PG+ G P   
Sbjct: 806 VAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEA 843

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
             GP G  G P    P G  GPP PP      G PG P  P
Sbjct: 32  FQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRP 72

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  G P P  P G  GP      PG  G     
Sbjct: 626 ARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTK 663

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
            TG  G  G    P  PG  G P      G+PG     
Sbjct: 107 LTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRV 144

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
             GP G  GP     PPG  G P P    G  G P P 
Sbjct: 158 SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPA 195

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G P P    G  G P  P   G+ G     
Sbjct: 68  KPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLD 105

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
            TG  G  G   PP P G  GPP PP   G  G   P 
Sbjct: 704 MTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPR 741

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 12/47 (25%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----------PPPMPGMPGPPPPP 589
           P G  G  G P    P G  G P          P  +PG+ G P P 
Sbjct: 353 PNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPI 399

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPPMP 591
             GP G  GPP     PG  G P        PG  GPP     
Sbjct: 818 IAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQ 860

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G  G  G P  P P G +GP   P   G  GP    
Sbjct: 167 PIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEV 204

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  G   P    G  G    P  PG+ GP   P
Sbjct: 335 VMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFP 372

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
           P G +G  G P      G  G         +PG+ G     
Sbjct: 917 PQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQ 957

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP G  G      P G  GP     + G  G P P  P
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGP 641

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GPP P    G  G        G PGPP   
Sbjct: 281 EPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLR 318

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  GP  P    G  G    P   G  GPP P 
Sbjct: 683 PPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPS 720

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  GP      PG +G P      G+PG     
Sbjct: 773 SAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSV 810

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 4/37 (10%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
             GPKG  G P  P   G +G       G PGP    
Sbjct: 413 FPGPKGPTGEPGKPGEKGNVGLAGAR--GAPGPDGNN 447

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  GP     P G  GP      PG  G   P 
Sbjct: 656 AKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPA 693

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G        G  G P  P + G PG P   
Sbjct: 89  TPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGEN 126

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 7/45 (15%)

Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
            +G   GP G  G P      G  GP     P    G  G   PP
Sbjct: 641 PSGFA-GPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPP 684

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G   P    G  GP       G  G P  P
Sbjct: 326 LPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEP 363

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  G P P    G  G   P    G  G   PP
Sbjct: 137 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPP 174

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 4/37 (10%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
             GP G  G        G +GP  PP  G PG    P
Sbjct: 287 QPGPPGPSGEEGKRGSTGEIGPAGPP--GPPGLRGNP 321

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G       PG  G   P    G  GP  P 
Sbjct: 881 PVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQ 918

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  GP   P   G  GP  P    G  G    P
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFP 414

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  G   P  P G  GP  P    G  G   P 
Sbjct: 953 HHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPA 990

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G  G  G   P    G  GP   P   G PGPP P 
Sbjct: 746 PVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQ 783

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G      P G  GP  P    G  GPP P 
Sbjct: 650 AAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPV 687

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            +GP G  GP      PG  G   P   PG PG   P 
Sbjct: 344 TSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPA 381

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP G  G   P    G  G        G  G   P  P
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGP 674

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  GP       G  G P P    G  GP    
Sbjct: 614 EGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAA 651

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555  PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            P GP+G     GP       G +GP     + G  G   P 
Sbjct: 965  PAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPA 1005

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P G  G  G   P    G +G        G  G      P
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGP 767

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
           P GP G  G P      G  G P P       G PG     
Sbjct: 479 PAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAA 519

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMPE 592
            TG +G  G P P    G  G    P   G PGPP P   E
Sbjct: 257 ATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEE 297

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
             G +G  G   PP   G +GP   P      G PGP    
Sbjct: 863 HKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAV 903

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  GP      PG  G        G  GP  P 
Sbjct: 638 PVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQ 675

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G P G  G  GPP P    G  GPP      G+ GP     P
Sbjct: 704 MTGFP-GAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGP 746

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 9/46 (19%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPPMP 591
             G  G  G P P    G  GPP       P    G  GP  PP P
Sbjct: 491 ERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGP 536

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G   P    G  G P      G PG P   
Sbjct: 341 SRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNI 378

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
             G KG  G P     PG  G           G PGP    
Sbjct: 113 APGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGAR 153

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G  G  G    P   G +G P P    G  G   P  P
Sbjct: 125 ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGP 164

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G KG  G   P    G +GP  P    G PGP    
Sbjct: 653 QPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAA 690

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  GP  P  P G  G        G  G     
Sbjct: 959 APGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIR 996

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             G  G  G       PG  G    P   G+ GPP    P
Sbjct: 788 APGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGP 827

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 9/44 (20%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
             GP+G  G P    P G  GP         P   G  GP    
Sbjct: 365 LMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEA 408

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G  G  G    P P G +GP       G  GP    
Sbjct: 884 PVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIR 921

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G P    P G  GP  P    G  G     
Sbjct: 950 LAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAV 987

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G KG  G P     PG  GP   P   G  G     
Sbjct: 224 LPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGAR 261

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           PTG  G  GPP PP P G +G P    +PG  G    P
Sbjct: 767 PTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLP 804

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G KG  G        G  G    P   G PGP    
Sbjct: 572 GKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGA 609

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  GP      PG  G P    + G  G     
Sbjct: 71  RPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLT 108

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP+G  G P     PG  G    P + G  G P P 
Sbjct: 779 PPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPL 816

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G       PG  GPP     PG  G    P
Sbjct: 833 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTP 870

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G P    PPG  G P      G PG   PP
Sbjct: 839 APGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPP 876

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G    P   G  GP  P    G  G     
Sbjct: 947 LPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRI 984

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P G  G  GP     P G  G P      G PGP     P
Sbjct: 686 PVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGP 725

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G P P   PG +G        G+ G P P 
Sbjct: 233 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPA 270

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP+G  GP       G  G      + G  G     
Sbjct: 908 AVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQ 945

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
             G  G  GP       G  GP     P    G+ G    P
Sbjct: 596 LPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEP 636

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 13/47 (27%), Gaps = 12/47 (25%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----------PPPMPGMPGPPPPP 589
             G  G  G   PP   G  G            PP   G  GP   P
Sbjct: 842 EAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEP 888

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G P  P   G  G P     PG  G    P
Sbjct: 101 HNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLP 138

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555  PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
            P+GP G  G      P G  G        G  GPP PP
Sbjct: 974  PSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPP 1011

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G   P  PPG  G P P    G PG P  P
Sbjct: 5   KGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEP 42

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 12/37 (32%), Gaps = 4/37 (10%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
            TG  G  G P     PG  G       G  GP  P 
Sbjct: 587 ATGRDGARGLPGAIGAPGPAGGAGDR--GEGGPAGPA 621

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G +G  G        G  G        G PG   PP
Sbjct: 740 PRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPP 777

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  G       PG +G P PP   G  G     
Sbjct: 266 EPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGST 303

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           P G +G  G    P P G  G   P   G  G P   
Sbjct: 623 PAGARGIRGERGEPGPVGPSGFAGPA--GAAGQPGAK 657

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 13/42 (30%), Gaps = 4/42 (9%)

Query: 553 GIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           GIP G +G  G P      G  G        G  G    P  
Sbjct: 559 GIP-GERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGA 599

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 9/44 (20%)

Query: 555 PTGPKG--------GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP+G        GP  PP   G  G P      G+PG    P
Sbjct: 197 PAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAP 240

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
           P GP G  G    P   G +GPP    P  +PG  G    P
Sbjct: 194 PAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLP 234

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKGGPPPP--PPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G   P      PG +G    P   G  GP    
Sbjct: 872 NAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAV 909

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             G  G  GP     P G  G P      G  GP     P
Sbjct: 632 ERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGP 671

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
            +G  G  G   PP  PG  G   P    G PGPP   
Sbjct: 23  ASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKA 60

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 9/43 (20%), Positives = 10/43 (23%), Gaps = 6/43 (13%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPPMP 591
             G +G  G        G  G   P       G  GP      
Sbjct: 941 HNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGR 983

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555  PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
              GP G  G        G  GPP PP  PG PGPP   
Sbjct: 986  AVGPAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSGG 1023

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G  G  G       PG  GPP      G  G P   
Sbjct: 854 PPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKL 891

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
           P G  G     G    P PPG +GP       G  GPP P 
Sbjct: 423 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 463

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G +G  G      PPG  GP  PP  PG  G     
Sbjct: 156 PAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEA 193

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P GP G  G      P G +GP  P    G  GP  P   
Sbjct: 894 PVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGD 933

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             GPKG  G P      G  GPP      G  G      P
Sbjct: 420 FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 459

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP G  G        G  GP  P   PG PG       
Sbjct: 153 APGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGE 192

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  GPP P  P G  G P      G  G P  P
Sbjct: 519 FPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 556

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  GPP PP P G  G P      G PG P P 
Sbjct: 753 PAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQ 790

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G P PP   G  G        G PGP  P 
Sbjct: 429 EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPA 466

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  G P P    G  G       PG  GP  PP
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPP 181

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P GP G  G P P  PPG  G       PG  G    P  
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGK 432

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  GP  P    G  GP   P   G+PGP  PP
Sbjct: 453 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 490

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
           P GPKG  G P     PG MGP   P     PG PGP    
Sbjct: 120 PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 160

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  G P P  P G  G        G  GP  P 
Sbjct: 882 PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPA 919

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G  G  GP      PG  G    P  PG  GP      
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 453

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  GP  P  PPG  G        G  G     
Sbjct: 165 AAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSE 202

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  GPP    P G  G       PG  GP    
Sbjct: 432 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 469

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP+G  G P      G  G P  P   G PG    P
Sbjct: 531 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 568

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GP  P    G  G   P    G  GP    
Sbjct: 885 APGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGAR 922

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G KG  G        G  GP  P   PG PG    P
Sbjct: 99  LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 136

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP G  G    P   G  G    P  PG  G P   
Sbjct: 528 PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ 565

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G        G  GPP P    G PG P   
Sbjct: 150 RPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAV 187

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GPKG  G    P P G  G P     PG  G P   
Sbjct: 339 VAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAK 376

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            TGP G  G P  P  PG +GP       G  GP  P 
Sbjct: 876 ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPI 913

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G +G  G    P   G  GP  P    G PGP  P 
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 358

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G KG  G P  P P G  GPP P    G PGP  PP
Sbjct: 372 LPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPP 409

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  G      PPG  GP      PG  G     
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDA 550

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 12/43 (27%), Positives = 13/43 (30%), Gaps = 6/43 (13%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
             G  G  G P     PG  G P       +PG  G      P
Sbjct: 546 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 588

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP+G  G    P  PG  G        G  GPP P 
Sbjct: 138 QMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPT 175

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G   PP P G  GPP P    G PGP    
Sbjct: 666 EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGAR 703

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP G  G P     PG  G   P    G  G P P  P
Sbjct: 318 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGP 357

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  G P     PG  G P    + G PG P P 
Sbjct: 351 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD 388

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GP       G  GP  P    G  G   P 
Sbjct: 888 APGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPA 925

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
           PTGP G  G        G  G         + G PGPP P 
Sbjct: 177 PTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPA 217

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P+G  G  GPP P  PPG  GPP      G PG    P
Sbjct: 825 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP 862

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            TGP G  G   PP PPG  G    P   G  G P  P
Sbjct: 750 ETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTP 787

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             G  G  G       PG  G   PP   G  G    P  
Sbjct: 504 DLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGN 543

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
           P GP+G  G        G  G         + G PGPP  P
Sbjct: 924 PAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSP 964

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  G P  P P G  G        G PGP  P 
Sbjct: 141 PRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPT 178

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G +G  G    P   G  G        G  GP  P 
Sbjct: 87  PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 124

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G P      G  GPP P    G PGP    
Sbjct: 657 ADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNV 694

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G    P  PG  G   PP   G  G P P 
Sbjct: 369 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPA 406

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 555  PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
            P+G  G  GP  PP   G  G      +PG  GPP P 
Sbjct: 969  PSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPR 1006

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
             G  G  GP   P   G  G P         G  G   PP
Sbjct: 132 ENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPP 172

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  G   P  P G  G    P   G PGPP P 
Sbjct: 612 PAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPA 649

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  G   P   PG  G P      G PG    P
Sbjct: 210 EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 247

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            +G  G  G   P  P G  G P     PG  GP   P
Sbjct: 108 FSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLP 145

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP+G  G P PP P G  GP   P   G PG       
Sbjct: 201 SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 240

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G  G  GP      PG  GP   P   G PG    P  
Sbjct: 336 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 375

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  GPP  P  PG  GP  P    G  G   P 
Sbjct: 873 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA 910

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GPKG  G    P   G  G       PG PGP    
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT 391

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 9/44 (20%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-------MPGMPGPPPPP 589
           P GP G  G P    P G  G P P        + G+PG     
Sbjct: 765 PPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGER 808

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  GP   P   G  G       PG+ G P  P
Sbjct: 213 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP 250

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  G    P   G  GPP P    G  G P   
Sbjct: 507 APGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGND 544

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
             G  G  G        G  G      PP  PG  GP     P
Sbjct: 933 DKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGP 975

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G  G  G P P  PPG  G P    +PG  G P P 
Sbjct: 474 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPS 511

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  G P    P G  GPP PP   G  G    P
Sbjct: 39  FQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP 76

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
           P GP G  GP     P G  GP          G  G     
Sbjct: 909 PAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHR 949

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P G +G  GP  P   PG  G P    +PG  G    P  
Sbjct: 345 PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS 384

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
           P G +G  GP      PG  GP     P   PG  G P   
Sbjct: 195 PEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 235

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  G    P P G  G    P   G+ GPP P 
Sbjct: 495 KPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPA 532

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
             G  G  G P P    G  G P        PG  GP    
Sbjct: 498 EQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGAN 538

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  GP       G +G P      G PG P P 
Sbjct: 780 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS 817

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P G +G  G    P P G  G P      G+PGPP    P
Sbjct: 408 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP 447

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555  PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             +GP G  GPP     PG  G    P   G PGP    
Sbjct: 972  ASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRT 1009

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  G P     PG  G       PG  GP  PP
Sbjct: 651 FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 688

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G P PP  PG  G   PP  PG PG   P 
Sbjct: 18  PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPM 55

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             G  G  GP  PP PPG  G       PG PG   PP P
Sbjct: 48  EPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 87

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            TGP G  GP   P   G  GP  P    G  G P   
Sbjct: 603 LTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDR 640

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GPP P   PG  G   P    G  G    P
Sbjct: 600 VRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAP 637

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GP   P  PG  G P      G+PG    P
Sbjct: 114 AKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP 151

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP G  G       PG  G   PP   G  G P   
Sbjct: 60  PPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTA 97

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G+P GP G  G   P    G  GPP P   PG+ GPP   
Sbjct: 810 FPGLP-GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGES 850

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP G  G P      G  GP      PG PGP      
Sbjct: 705 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGS 744

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 9/44 (20%)

Query: 555 PTGPKGGP--PPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
             GP G         PPG  GP        P   PG  G P P 
Sbjct: 444 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
           P GP G  GPP P    G  GP         PG  G P   
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAA 718

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  G    P P G  G    P   G+PG    P
Sbjct: 471 EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP 508

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 555 PTGPKGGPPPP--PPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P G  G           G  GP  P    G  GP   P  
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
             GP G  GP  PP  PG +G      P    G  GP    
Sbjct: 168 AAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVR 208

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G  G  G      P G  G P    + G+ GP  PP P
Sbjct: 573 AAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGP 612

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-------MPGMPGPPPPP 589
           P GP G  GPP PP P G  G   P         PG  GPP PP
Sbjct: 723 PPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPP 766

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  G    P   G  G P     PG PG   P 
Sbjct: 219 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPS 256

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           P+GP+G  GPP  P P G  GPP  P  PG  GP  P  P
Sbjct: 21  PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 60

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G KG  GP  P  P G  G P     PG PGP    
Sbjct: 615 APGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFA 652

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             G  G  G P     PG  G    P   G  G   P   
Sbjct: 552 APGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA 591

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G KG  G   P   PG +GPP PP   G  G P   
Sbjct: 741 KEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGAD 778

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP G  G      P G  GP   P   G PGPP P 
Sbjct: 732 PPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPA 769

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G   P   PG  G P P   PG  G P   
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 499

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G    P P G  G   PP   G PG     
Sbjct: 684 PAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRV 721

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G   PP P G  G P P   PG  G     
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVM 418

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G        G  GPP  P  PG PGP  P 
Sbjct: 861 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 898

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G P    PPG  G    P   G+PG     
Sbjct: 69  DDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHR 106

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 6/43 (13%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPPMP 591
           P GP G  G P     PG +G P P       G PG      P
Sbjct: 486 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGP 528

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  GP      PG  G P      G  G     
Sbjct: 78  RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAK 115

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  GPP P    G  G    P M G  G     
Sbjct: 75  KPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD 112

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  GP  PP   G  G    P   G  G P   
Sbjct: 396 PAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKA 433

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  G P      G  G        G  GP   P
Sbjct: 90  ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEP 127

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 553 GIPTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           GI  G +G     GPP PP  PG  GP       G  GPP   
Sbjct: 944 GIK-GHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 985

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 46.3 bits (110), Expect = 6e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GP G  GP      PG  GP   P  PG  G     
Sbjct: 759 EVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQR 796

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  GPP     PG  G P    + G  GP    
Sbjct: 312 EPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER 349

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
           P G  G  G      PPG  G   PP  PG  G      P
Sbjct: 708 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGP 747

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
             G  G  G   P  PPG  G P      G  GP  P 
Sbjct: 594 APGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPT 631

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G  G  G       PG  GP   P   G  G      P
Sbjct: 795 QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP 834

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             GP G  G P    P G  GP  P   PG  G P   
Sbjct: 954 LQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKD 991

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             GPKG  G   PP   G  G       PG  G   PP
Sbjct: 696 APGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 733

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
            TG KG  GP     PPG  G        G PGP   P
Sbjct: 282 DTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLP 319

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             GP G  G        G  GP      PG  G    P P
Sbjct: 402 RPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 441

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G +G  GP       G  G P P  +PG PG    P
Sbjct: 291 PAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGP 328

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G +G  G P P   PG  GP       G PGP  PP
Sbjct: 804 QRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPP 841

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P GP G  G P     PG  GP      PG  G P   
Sbjct: 627 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 664

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  G        G +GPP P   PG  G   P 
Sbjct: 588 PKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPS 625

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
            TG  G  G   PP P G  GPP    P    G  GP    
Sbjct: 711 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGET 751

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMP-GMPGPPPPPMP 591
             G +G  G       PG  G      P G  G P     
Sbjct: 561 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGV 600

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 9/44 (20%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
             G  G  G P PP P G  GPP           PG  G     
Sbjct: 633 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA 676

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P G +G  GPP     PG  G   PP   G  GPP PP
Sbjct: 699 PKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 736

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
             G  G  GPP     PG  G P     PG  G     
Sbjct: 480 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 517

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             G  G  G   P  P G  G P P    G PG    P  
Sbjct: 330 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGE 369

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
             G  G  GP     PPG  GP       G  G   P 
Sbjct: 717 AAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPA 754

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
             G+P G +G  G P P    G  GP      PG  G      P
Sbjct: 564 LQGMP-GERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGP 606

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
             GP G  G        G  GP   P  PG  G P     
Sbjct: 294 VQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGF 333

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           AAG+P GPKG  G   P    G  G      + G  GPP P 
Sbjct: 573 AAGLP-GPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPA 613

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
           P G  G  G P      G  G    P      G  GP  P 
Sbjct: 222 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPS 262

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G      PPG  G P      G PGP    
Sbjct: 693 NVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 730

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 9/44 (20%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
             G  G  G P     PG  G         PP  PG PG P P 
Sbjct: 852 REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPV 895

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G  G P      G  G P P    G PGP    
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGED 400

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 555  PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
              G  G  GP  PP P G  G   P   PG PGPP PP
Sbjct: 990  KDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPP 1027

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  G   P    G  G P     PG PGP    
Sbjct: 735 PPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEK 772

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           P G  G  G       PG  G P     PG  G     
Sbjct: 840 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGET 877

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 4/42 (9%)

Query: 555  PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
            P GP G  GPP PP PP G           P          Y
Sbjct: 1014 PAGPPGPPGPPGPPGPPSGGYDLSF--LPQPPQQKAHDKGRY 1053

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 557 GPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
              G          PG MGP  P  +PG PG P P 
Sbjct: 2   MSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQ 37

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G +G  G        G  GPP  P   G  G   P 
Sbjct: 939 EEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA 976

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMPE 592
             GPKG  G P  P   G  G    P   G+ GPP P   E
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEE 304

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
             G +G  G P      G  G P P   G PG   P 
Sbjct: 792 IAGQRGVVGLPGQRGERGFPGLPGPS--GEPGKQGPS 826

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 50.5 bits (120), Expect = 7e-07
 Identities = 17/47 (36%), Positives = 19/47 (40%)

Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCH 598
           A  P G +G    P   PGG   P P  PG P PP P     +   H
Sbjct: 183 AAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 18/70 (25%), Gaps = 2/70 (2%)

Query: 524 QAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMP 583
           Q     E  S           E KA    G                 G  P     PG  
Sbjct: 150 QFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPA 209

Query: 584 GP--PPPPMP 591
           GP  PPPP P
Sbjct: 210 GPGGPPPPFP 219

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPG-GMGPPPPPMPGMPGPPPPPMPEM 593
                G    P G      P  G G G  P  +PG    P P  P  
Sbjct: 167 QMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGG 213

>3pod_A MBL collagen-like peptide; collagen peptide, complement proteins, lectin pathway of COM MAsp-1 CUB1 and CUB2 domains, bloodstream, unknown function; 1.50A {Synthetic} Length = 26

 Score = 45.2 bits (107), Expect = 7e-07
 Identities = 18/26 (69%), Positives = 19/26 (73%), Gaps = 2/26 (7%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
           GPP PP PPG +GPP PP P  PGPP
Sbjct: 2   GPPGPPGPPGKLGPPGPPGP--PGPP 25

>3pon_A MBL collagen-like peptide; collagen peptide, MBL collagen-like region, complement prote lectin pathway of complement; 1.50A {Synthetic} PDB: 3pob_B Length = 29

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 20/30 (66%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
           GP G PP PP PPG +GPP PP P  PGPP
Sbjct: 2   GPPG-PPGPPGPPGKLGPPGPPGP--PGPP 28

>3pon_A MBL collagen-like peptide; collagen peptide, MBL collagen-like region, complement prote lectin pathway of complement; 1.50A {Synthetic} PDB: 3pob_B Length = 29

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           GPP PP PPG  G   PP P  PGPP PP
Sbjct: 2   GPPGPPGPPGPPGKLGPPGP--PGPPGPP 28

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 47.5 bits (112), Expect = 8e-07
 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           P G    PP   PPP   G P PP  G  G PPPP
Sbjct: 57  PPGATPAPPGAAPPPAAGGSPSPPADG--GSPPPP 89

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 10/49 (20%)

Query: 551 AAGIPTGPKGGPPP-----PPPPPGGMGPPPP-----PMPGMPGPPPPP 589
               P  P   PPP     P PP  G  PPPP     P      PPPP 
Sbjct: 58  PGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106

>3a0m_A Collagen-like peptide; triple-helix, model peptide, twinned crystal, STRU protein; 1.02A {Synthetic} Length = 27

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 18/26 (69%), Positives = 19/26 (73%), Gaps = 2/26 (7%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
           GPP PP PPG +GPP PP P  PGPP
Sbjct: 3   GPPGPPGPPGPVGPPGPPGP--PGPP 26

>3a0m_A Collagen-like peptide; triple-helix, model peptide, twinned crystal, STRU protein; 1.02A {Synthetic} Length = 27

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           PP PP PPG  GP  PP P  PGPP PP
Sbjct: 1   PPGPPGPPGPPGPVGPPGP--PGPPGPP 26

>3a0m_A Collagen-like peptide; triple-helix, model peptide, twinned crystal, STRU protein; 1.02A {Synthetic} Length = 27

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 568 PPGGMGPPPPPMP-GMPGPPPPPMP 591
           PPG  GPP PP P G PGPP PP P
Sbjct: 1   PPGPPGPPGPPGPVGPPGPPGPPGP 25

>3a1h_A Collagen-like peptide; collagen helix, HOST-guest peptide, twinned crystal, structu protein; 1.08A {Synthetic} Length = 27

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
           GPP PP PPG  GPP PP P  PGPP
Sbjct: 3   GPPGPPGPPGPTGPPGPPGP--PGPP 26

>3a1h_A Collagen-like peptide; collagen helix, HOST-guest peptide, twinned crystal, structu protein; 1.08A {Synthetic} Length = 27

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           PP PP PPG  GP  PP P  PGPP PP
Sbjct: 1   PPGPPGPPGPPGPTGPPGP--PGPPGPP 26

>3a1h_A Collagen-like peptide; collagen helix, HOST-guest peptide, twinned crystal, structu protein; 1.08A {Synthetic} Length = 27

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           PP PPG  GPP P  P  PGPP PP P
Sbjct: 1   PPGPPGPPGPPGPTGP--PGPPGPPGP 25

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 12/37 (32%), Positives = 12/37 (32%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
             G  GG   PP   GG G P     G P       P
Sbjct: 21  GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQP 57

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 11/43 (25%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 553 GIPTGPK--GGPPPP----PPPPGGMGPPPPPMPGMPGPPPPP 589
           G    PK  GG        P      G   PP  G     P  
Sbjct: 1   GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHG 43

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 10/45 (22%), Positives = 11/45 (24%), Gaps = 4/45 (8%)

Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
              +  P     G    PP  GG    P       P   G   P 
Sbjct: 14  TGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH 58

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 9/37 (24%), Positives = 9/37 (24%), Gaps = 2/37 (5%)

Query: 557 GPKGGPPPP--PPPPGGMGPPPPPMPGMPGPPPPPMP 591
           G K  P P       G   P      G   PP     
Sbjct: 1   GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGG 37

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 12/47 (25%), Positives = 12/47 (25%), Gaps = 6/47 (12%)

Query: 551 AAGIPTGPKGGPPPPP------PPPGGMGPPPPPMPGMPGPPPPPMP 591
             G  TG    P          PP GG G   P   G   P      
Sbjct: 9   GGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG 55

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 43.7 bits (102), Expect = 9e-05
 Identities = 11/42 (26%), Positives = 12/42 (28%), Gaps = 4/42 (9%)

Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPP----PPMPGMPGPPPPP 589
            G    P+GG     P  GG G P         G     P  
Sbjct: 26  GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 67

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 9/33 (27%), Positives = 9/33 (27%)

Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           G   G     P  GG G P     G P      
Sbjct: 47  GQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGW 79

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 10/45 (22%), Positives = 10/45 (22%), Gaps = 6/45 (13%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPP------PPMPGMPGPPPPP 589
             G         P    P G   PP        P  G  G P   
Sbjct: 8   PGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 52

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 8/43 (18%), Positives = 9/43 (20%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
             G      GG   P    G            P  P   M  +
Sbjct: 59  GGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHV 101

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 9/44 (20%), Positives = 9/44 (20%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
            Q   G    P GG    P   G   P         G       
Sbjct: 39  GQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQG 82

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 10/46 (21%), Positives = 11/46 (23%), Gaps = 4/46 (8%)

Query: 551 AAGIPTGPKGGPPPPPP----PPGGMGPPPPPMPGMPGPPPPPMPE 592
               P    GG   P       P G G   P   G   P      +
Sbjct: 27  GNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 72

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 11/40 (27%), Positives = 11/40 (27%)

Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
            G   G   G     P  GG G P     G P       P
Sbjct: 34  GGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 73

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 21/41 (51%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 551 AAGIPTGPKG----GPPPPPPPPGGMGPP-PPPMPGMPGPP 586
             G P GP G    GPP PP PPG  G P     PG PGPP
Sbjct: 47  VMGFP-GPPGPPXXGPPGPPGPPGPRGQPGVMGFPGPPGPP 86

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           P GP G  GP   P   G  GPP PP  G PGPP PP
Sbjct: 3   PPGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPP 39

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           P GP+G  G    P PPG     PP  PG PGP   P  
Sbjct: 9   PPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQPGV 47

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           P GP G  GP   P   G  GPP PP  G PGPP PP
Sbjct: 32  PPGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPP 68

>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding fold, collagen binding, platelet activa hemostasis, plasma, structural protein-protein binding COMP; 2.80A {Synthetic} Length = 87

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 555 PTGPKGGPPPP----PPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP+G P       PP P   GPP PP  PG  G P   
Sbjct: 38  PPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQPGVM 77

>3adm_A Collagen-like peptide; triple helix, model peptide, structural protein; HET: HYP; 1.18A {Synthetic} Length = 27

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
           GPP PP PPG  GPP PP P  PGPP
Sbjct: 3   GPPGPPGPPGPSGPPGPPGP--PGPP 26

>3adm_A Collagen-like peptide; triple helix, model peptide, structural protein; HET: HYP; 1.18A {Synthetic} Length = 27

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           PP PP PPG  GP  PP P  PGPP PP
Sbjct: 1   PPGPPGPPGPPGPSGPPGP--PGPPGPP 26

>3adm_A Collagen-like peptide; triple helix, model peptide, structural protein; HET: HYP; 1.18A {Synthetic} Length = 27

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           PP PPG  GPP P  P  PGPP PP P
Sbjct: 1   PPGPPGPPGPPGPSGP--PGPPGPPGP 25

>1qsu_A Protein ((Pro-HYP-Gly)4- Glu-Lys-Gly(Pro-HYP- Gly)5); triple helix, structural protein; 1.75A {Synthetic} SCOP: k.3.1.1 Length = 30

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           GPP PP PPG  GPP P  PG PGPP PP
Sbjct: 3   GPPGPPGPPGEKGPPGP--PGPPGPPGPP 29

>3ah9_A Collagen-like peptide; triple helix, model peptide, structural protein; 1.08A {Synthetic} PDB: 2cuo_A 2d3f_A 2d3h_A 3a19_A 1x1k_A 3ai6_A* Length = 27

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           PP PP PPG  GPP P  PG PGPP PP
Sbjct: 1   PPGPPGPPGPPGPPGP--PGPPGPPGPP 26

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 557 GPKGGPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
           GP G PP P    G  G    P  PGMPGPP PP
Sbjct: 1   GPIG-PPGPRGNRGERGSEGSPGHPGMPGPPGPP 33

>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple helix, glycine, MAD phasing, alternative splicing, disease mutation; 2.30A {Synthetic} Length = 42

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           P GP G  G        G  G P    PG PGPP  P P
Sbjct: 2   PIGPPGPRGNRGERGSEGSPGHPGM--PGPPGPPGAPGP 38

>3abn_A Collagen-like peptide; collagen-helix, structural protein; HET: HYP; 1.02A {Synthetic} Length = 27

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
           GPP PP PPG  GPP PP P  PGPP
Sbjct: 3   GPPGPPGPPGPDGPPGPPGP--PGPP 26

>3abn_A Collagen-like peptide; collagen-helix, structural protein; HET: HYP; 1.02A {Synthetic} Length = 27

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           PP PP PPG  GP  PP P  PGPP PP
Sbjct: 1   PPGPPGPPGPPGPDGPPGP--PGPPGPP 26

>3abn_A Collagen-like peptide; collagen-helix, structural protein; HET: HYP; 1.02A {Synthetic} Length = 27

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 17/25 (68%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 568 PPGGMGPPPPPMP-GMPGPPPPPMP 591
           PPG  GPP PP P G PGPP PP P
Sbjct: 1   PPGPPGPPGPPGPDGPPGPPGPPGP 25

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           P GP G  GP       G +G P      G PGPP PP
Sbjct: 2   PPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPP 39

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 561 GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
           GPP PP PPG  G      + G+PG      P
Sbjct: 1   GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGP 32

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 8/48 (16%)

Query: 551 AAGIPTGPKG-----GPPPPPPPPGGMGPP--PPPMPGMPGPPPPPMP 591
           + G P G  G     G    P   GG+G         G+ G       
Sbjct: 22  SVGGP-GCDGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGKGGS 68

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 10/37 (27%), Positives = 10/37 (27%), Gaps = 4/37 (10%)

Query: 552 AGIPTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPP 586
            G   G  G  G        G   P      G PG P
Sbjct: 47  VGGAGGASGGTGVGGRGGKGGSGTPKGA--DGAPGAP 81

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 7/36 (19%), Positives = 7/36 (19%), Gaps = 1/36 (2%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
             G  G         G  G        G  G   P 
Sbjct: 37  GNGNPGCAGGVGGAGGASGGTGVGGRGGKGGSGTPK 72

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 10/37 (27%), Positives = 10/37 (27%), Gaps = 2/37 (5%)

Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPP-PPPMPGMPGPP 586
             G P G  GG        GG G        G   P 
Sbjct: 37  GNGNP-GCAGGVGGAGGASGGTGVGGRGGKGGSGTPK 72

>2f6a_E Collagen; CNA, mscramm, adhesion, ECM, cell adhesion/structural protein complex; 3.29A {Staphylococcus aureus} Length = 30

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
           P GP G PP PP P G  GPP PP  G PGPP
Sbjct: 2   PPGPPG-PPGPPGPRGRTGPPGPP--GPPGPP 30

>2f6a_E Collagen; CNA, mscramm, adhesion, ECM, cell adhesion/structural protein complex; 3.29A {Staphylococcus aureus} Length = 30

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           GPP PP PPG  G   PP P  PGPP PP
Sbjct: 4   GPPGPPGPPGPRGRTGPPGP--PGPPGPP 30

>2y5t_F C1; immune system, antibody, rheumatoid arthritis; 2.20A {Mus musculus} Length = 38

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           P GP G PP PP PPG  G    P  G  GPP PP
Sbjct: 2   PPGPPG-PPGPPGPPGARGLTGRP--GDAGPPGPP 33

>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} Length = 26

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 13/19 (68%), Positives = 16/19 (84%), Gaps = 1/19 (5%)

Query: 574 PPPPPMPGMPG-PPPPPMP 591
           PPPPP+PG+   PPPPP+P
Sbjct: 2   PPPPPLPGVASIPPPPPLP 20

>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} Length = 26

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 563 PPPPPPPGGMG-PPPPPMPG 581
           PPPPP PG    PPPPP+PG
Sbjct: 2   PPPPPLPGVASIPPPPPLPG 21

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 11/45 (24%)

Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           K +V             P   P   M P  P   GM        P
Sbjct: 5   KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP 49

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 548 AQVAAGIPTGPKGGP----PPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
           AQ+  G    P   P    PP  P   GM      MP     P     +  T
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 11/47 (23%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
              AAG+  G  G PP    P  G      P                
Sbjct: 34  DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 5/47 (10%), Positives = 7/47 (14%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
            Q                      M     P+        P +P   
Sbjct: 59  QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 8/47 (17%), Positives = 14/47 (29%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
           A ++ G    P  G  P       + P    +          M +M+
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH 84

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 9/46 (19%), Positives = 10/46 (21%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
             +       P   P       G MG PP       G      P  
Sbjct: 21  TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 6/44 (13%), Positives = 9/44 (20%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
            Q A       +   P        +      M  M     P + 
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 8e-04
 Identities = 6/44 (13%), Positives = 7/44 (15%)

Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           AQ          G        P     P         P    + 
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

>4dmt_A Collagen III derived peptide; collagen triple helix, VON willebrand factor, structural Pro; 1.39A {Synthetic} Length = 32

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
           GPP PP PPG  G P   + G PGPP PP P
Sbjct: 2   GPPGPPGPPGPRGQPG--VMGFPGPPGPPGP 30

>3b0s_A Collagen-like peptide; triple helix, structural protein; HET: HYP; 1.45A {Synthetic} PDB: 1ym8_A* Length = 27

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           GPP PP PPG  GPP P  PG PGPP PP
Sbjct: 1   GPPGPPGPPGPPGPPGP--PGPPGPPGPP 27

>2y5t_E C1; immune system, antibody, rheumatoid arthritis; 2.20A {Mus musculus} Length = 34

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 561 GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
           GPP PP PPG  GPP        PG  GPP PP
Sbjct: 1   GPPGPPGPPGPPGPPGARGLTGRPGDAGPPGPP 33

>1nay_A CCP4, collagen-like peptide; collagen assembly, structural protein; 2.60A {Synthetic} SCOP: k.3.1.1 Length = 56

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 20/35 (57%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 557 GPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           GP G  GPP PP PPG  GPP P  PG PG    P
Sbjct: 1   GPPGPPGPPGPPGPPGPPGPPGP--PGPPGSGYIP 33

>3u29_A Triple helical peptide; triple helix, biosynthetic protein; 2.00A {Synthetic construct} Length = 26

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPP 586
           PP PP PPG  G P PP P  PGPP
Sbjct: 1   PPGPPGPPGPKGDPGPPGP--PGPP 23

>3t4f_A Collagen mimetic peptide; triple helix, biosynthetic protein; 1.68A {Synthetic construct} Length = 26

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPP 586
           PP PP PPG  G P PP P  PGPP
Sbjct: 1   PPGPPGPPGPKGEPGPPGP--PGPP 23

>1x1k_F HOST-guest peptide (Pro-Pro-Gly)4-(Pro-allohyp- Gly)-(Pro-Pro-Gly)4; non-natural amino acid, collagen model peptide, puckering, triple-helix stability; 1.10A {Synthetic} PDB: 1wzb_A 1k6f_A 2klw_C* Length = 30

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 562 PPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
           PP PP PPG  GPP PP  PG PGPP PP
Sbjct: 1   PPGPPGPPGPPGPPGPPGPPGPPGPPGPP 29

>1bkv_A T3-785; collagen, hydroxyproline, hydrogen bonding; 2.00A {} SCOP: k.3.1.1 Length = 30

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 6/30 (20%)

Query: 562 PPPPPPPPG-----GMGPPPPPMPGMPGPP 586
           PP PP PPG     G+  PP P PG PGPP
Sbjct: 1   PPGPPGPPGITGARGLAGPPGP-PGPPGPP 29

>2g66_A Collagen; 3(S)hydroxyproline, 4(R)hydroxyproline, UP pucker, DOWN pucker, structural protein; 1.80A {Synthetic} Length = 31

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
           GPP PP PPG  G P P  PG PGPP PP
Sbjct: 4   GPPGPPGPPGXPGXPGP--PGPPGPPGPP 30

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	927
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	100.0
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	100.0
3obv_E	457	Protein diaphanous homolog 1; autoinhibition, acti	100.0
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	100.0
1v9d_A	340	Diaphanous protein homolog 1; helix bundle, protei	100.0
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	100.0
1ux5_A	411	BNI1 protein; structural protein, FH2 actin cytosk	100.0
4eah_A	402	Formin-like protein 3, actin, alpha skeletal muscl	100.0
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	99.73
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	99.56
4dvg_B	353	Diaphanous protein; cytoskeleton, armadillo repeat	99.16
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	98.35
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	97.46
2v8f_C	26	MDIA1, profilin IIA; alternative splicing, protein	94.93
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	93.91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	93.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	93.77
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	93.61
3grl_A	651	General vesicular transport factor P115; vesicle t	92.45
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	91.38
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	90.88
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	90.73
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	89.86
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	89.69
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	85.76
3grl_A	651	General vesicular transport factor P115; vesicle t	85.16
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	84.63
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	84.57
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	81.23
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	81.05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	80.83

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=100.00  E-value=3.7e-72  Score=634.88  Aligned_cols=374  Identities=41%  Similarity=0.727  Sum_probs=314.9

Q ss_pred             hhccCCCHHHHHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccc-cccccccCCCChHHHHHHhcCCccchh
Q psy15122         73 NMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV-TSYENKSKFDKPIEYIQYLSQPELSVN  151 (927)
Q Consensus        73 ~~~~~~~~~ei~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~-~~~~~~~~~~~P~~~i~~L~~~~~~~~  151 (927)
                      ..+..|++++|+++|++||++||++++||++|+++|.++||+||+||.+... ++.+ .+...+|+|||++|+++ .+..
T Consensus         5 ~~~~~~se~ev~~~F~~mL~~mnl~~ek~~~l~~~~~e~Kw~mi~~~~~~~~~~~~~-~~~~~sP~~yi~~L~~~-~~~~   82 (383)
T 3eg5_B            5 QSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQ-KESSRSAMMYIQELRSG-LRDM   82 (383)
T ss_dssp             ----------CCHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHHHHHHHC----------CCCHHHHHHHHTTT-CCHH
T ss_pred             hhcccCCHHHHHHHHHHHHHHcCCCHHHHHHHHhCCHHHHHHHHHHHHHHhhhcccc-ccCCCCHHHHHHHHHhc-ccch
Confidence            4466789999999999999999999999999999999999999999986532 1222 34578999999999987 4566


Q ss_pred             hhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCC--CcchhhHHHHHHHHHHHHHHhcHhhHHHH
Q psy15122        152 KMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSR--NDSRYDRVQYECVRCIRAIMNNTVGLKQM  229 (927)
Q Consensus       152 ~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~--~~~~~~~~~~e~vkCLkaimN~~~Gl~~v  229 (927)
                      +++++|.+|||+|||+|++||++|+.+|+.+|+++ |..+..    +..  ....+...||+||+|||||||+++|++.|
T Consensus        83 kl~~~L~sL~v~Lrt~~~sWV~~F~~~Gl~~Ll~i-L~~~~~----~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~v  157 (383)
T 3eg5_B           83 HLLSCLESLRVSLTSHPVSWVQTFGAEGLASLLDI-LKRLHD----EKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM  157 (383)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHT----CC-------CHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhCccHHHHHHHHccHHHHHHH-HHHHhh----ccccccchhhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            78899999999999999999999999999999995 332221    111  12445688999999999999999999999


Q ss_pred             hcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCC-C-chHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHH
Q psy15122        230 FGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPP-D-GHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTA  307 (927)
Q Consensus       230 l~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~-~-Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~  307 (927)
                      +.|+++|..|+.|+++.+++++++|+|||+++|+++. . ||++||+||++++..++..||++||..| ....+++|+++
T Consensus       158 l~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L-~~~~~~e~~~~  236 (383)
T 3eg5_B          158 LETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL-KSGTSIALKVG  236 (383)
T ss_dssp             HTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT-STTSCHHHHHH
T ss_pred             HcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH-HccCcHHHHHH
Confidence            9999999999999999999999999999999999985 3 6999999999999888999999999999 45589999999


Q ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhhhHhHHHHHHHhchhcccccCCHHHH
Q psy15122        308 CLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDC  387 (927)
Q Consensus       308 ~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~~~~D~~el~~r~~~~~~d~~~~~~~  387 (927)
                      ||.|||+||++++|+++|+|||+||.++||.+++++|+..++++|.+||++|++.+++|++|+.+|++++++|++|+.+|
T Consensus       237 ~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~~~~d~~d~~~~  316 (383)
T 3eg5_B          237 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEV  316 (383)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHHHHHHHHHHHHhHHHHHhhccccCcCcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchhhHHHHHhhhhccccchhhhhhhhhhhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhccCC
Q psy15122        388 FETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGG  467 (927)
Q Consensus       388 f~~l~~~v~~t~a~~~f~sil~~ll~~~~~~~~~~~~~~~p~~lSilQhllli~~d~~~~~~~~~Lid~~v~qivl~r~g  467 (927)
                      |++|++++++|++++||                          +||||||++|++|...+.+||+|||+||+|||+|++|
T Consensus       317 ~~~l~~~~~~t~a~~~f--------------------------lSiLQhLlli~~d~~~~~~~~~Lid~~v~qivl~~~g  370 (383)
T 3eg5_B          317 FQIILNTVKDSKAEPHF--------------------------LSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNG  370 (383)
T ss_dssp             HHHHHHHTTTSTTHHHH--------------------------HHHHHHTTCSCSSCTTHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHhcCCcchHHH--------------------------HHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999                          9999999999999888999999999999999999999


Q ss_pred             CCCCcccccccccc
Q psy15122        468 CDPDFRSSRRFQLD  481 (927)
Q Consensus       468 ~d~d~~~~~~~~~d  481 (927)
                      .||||+++ +|++|
T Consensus       371 ~dpd~~~~-~~~~~  383 (383)
T 3eg5_B          371 TDPDFKCR-HLQID  383 (383)
T ss_dssp             --------------
T ss_pred             CCCCCCcc-CCCCC
Confidence            99999877 67665

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=100.00  E-value=8.5e-66  Score=583.85  Aligned_cols=364  Identities=38%  Similarity=0.725  Sum_probs=305.5

Q ss_pred             CCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHH
Q psy15122        133 FDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYEC  212 (927)
Q Consensus       133 ~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~  212 (927)
                      ..+|+|||++|+++. +.+.++++|++|||+|||+|++||++|+.+|+++|+++ |..+...  ........+...+|+|
T Consensus         3 ~~~P~~yv~~L~~~~-~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~-L~~~~~~--~~~~~~~~d~~~~~~~   78 (386)
T 2bnx_A            3 SRSAMMYIQELRSGL-RDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDI-LKRLHDE--KEETSGNYDSRNQHEI   78 (386)
T ss_dssp             CCCHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHTC--CTTTCCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcc-chHHHHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHH-HHHHHhc--ccccccchhHHHHHHH
Confidence            579999999999874 55667889999999999999999999999999999995 3332211  1110113467789999


Q ss_pred             HHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCC-Cc-hHHHHHHHHhhcccccCcChHH
Q psy15122        213 VRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPP-DG-HDKVIKAITMSGELKGKERFQP  290 (927)
Q Consensus       213 vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~-~G-h~~VL~Al~~~~~~~e~~RF~~  290 (927)
                      |+|||||||+++|++.|+.|+.+|..|+.|+++++++++++|+|+|+++|+++. +| |++||+||++++..+++.||++
T Consensus        79 l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~  158 (386)
T 2bnx_A           79 IRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQP  158 (386)
T ss_dssp             HHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred             HHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHH
Confidence            999999999999999999999999999999999999999999999999999985 48 9999999999988889999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhhhHhHHHHH
Q psy15122        291 VVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF  370 (927)
Q Consensus       291 lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~~~~D~~el  370 (927)
                      ||++| ....+.+|+++||.|||+||++++|+++|+|||+||.++||.+++++|+...+++|++||++|++.+++|.+++
T Consensus       159 lv~~l-~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el  237 (386)
T 2bnx_A          159 LLDGL-KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDL  237 (386)
T ss_dssp             HHHHT-STTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHH
Confidence            99999 45789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchhcccccCCHHHHHHHHHHHhhcCCCchhhHHHHHhhhhccccchhhhhhhhhhhHHHHHHHhhhccchhhHHHHH
Q psy15122        371 IQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAY  450 (927)
Q Consensus       371 ~~r~~~~~~d~~~~~~~f~~l~~~v~~t~a~~~f~sil~~ll~~~~~~~~~~~~~~~p~~lSilQhllli~~d~~~~~~~  450 (927)
                      .+|++++.+|++|+.+||+.|++++++|++++||                          +||||||++|++|...+.+|
T Consensus       238 ~~r~~~i~~d~~d~~~~~~~l~~~~~~t~~~~~f--------------------------lSiLQhLLli~~d~~~~~~~  291 (386)
T 2bnx_A          238 KGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHF--------------------------LSILQHLLLVRNDYEARPQY  291 (386)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHTTSTHHHHH--------------------------HHHHHHHTTSCCCTTTHHHH
T ss_pred             HhhhhcCCCCCCCHHHHHHHHHHHHcCCCchhHH--------------------------HHHHHHHHhCCCcchhHHHH
Confidence            9999999999999999999999999999999999                          99999999999998889999


Q ss_pred             HHHHHHHHHHHHhccCCCCCCccccccccccchHHHHHHHHhhh-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15122        451 YKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSK-TEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKT  528 (927)
Q Consensus       451 ~~Lid~~v~qivl~r~g~d~d~~~~~~~~~dv~~ll~~l~~~~~-~~~~k~~~el~~kle~~~~~~qe~ea~~~~le~~  528 (927)
                      |+|||+||+||++|++|.||||..+ +|+++|+++++.+.++++ ++.+++..+++++++++++++||+++++++.|.+
T Consensus       292 ~~Lid~~v~qivl~~~~~Dpd~~~~-~l~~~v~~l~d~l~~~~~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~  369 (386)
T 2bnx_A          292 YKLIEECVSQIVLHKNGTDPDFKCR-HLQIDIERLVDQMIDKTKVEKSEAKATELEKKLDSELTARHELQVEMKKMEND  369 (386)
T ss_dssp             HHHHHHHHHHHHTCGGGCCCCTTCS-CCCCCCTTTC-----CTHHHHHHTTTCC-------------------------
T ss_pred             HHHHHHHHHHHHhccCCCCCCcccc-cccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999865 899999999999999876 6667778999999999999999999999887765

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D

Probab=100.00  E-value=5.5e-58  Score=528.06  Aligned_cols=262  Identities=47%  Similarity=0.762  Sum_probs=253.9

Q ss_pred             CccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHH
Q psy15122        591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDT  670 (927)
Q Consensus       591 pe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~  670 (927)
                      ++.+.+|+++|.++..||++|++|..|+.||++||++|||||+|+++|+|+||+|+||.||.||||+|+++||||||+++
T Consensus       178 ~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~  257 (457)
T 3obv_E          178 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL  257 (457)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHH
Q psy15122        671 IEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLL  750 (927)
Q Consensus       671 v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L  750 (927)
                      |+++||++++|.+||.+|..|++||+++|.+++++|.++++.++++++....+  .++.|.|..+|..|+..|..++..|
T Consensus       258 v~~~~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~~--~~~~d~f~~~m~~Fl~~A~~~~~~L  335 (457)
T 3obv_E          258 CENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAA--TDEKDKFVEKMTSFVKDAQEQYNKL  335 (457)
T ss_dssp             HHHHCGGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCCC--SSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCccccCChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCC--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999876544  5677899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15122        751 SNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKK  830 (927)
Q Consensus       751 ~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~rr~~~akekaerek~er~~~kk  830 (927)
                      +..+..|.+.|.+++.||||||+++++++||++|.+|+..|++|++||++++++|++.+|+++|+|+|+|++.|++++++
T Consensus       336 ~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~fkkA~~eN~~r~e~eek~~r~~~a~e~~~~~~~e~~~~~~  415 (457)
T 3obv_E          336 RMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKRE  415 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCccchHHHHHHHHhc
Q psy15122        831 ALIDMTTDQTQQGVMDSLLEALQT  854 (927)
Q Consensus       831 ~~~~~~~~~~~~~v~D~Ll~~Lrs  854 (927)
                      ++++++++++++||||+||++|||
T Consensus       416 ~~~~~~~~~~~~gv~D~Ll~~l~s  439 (457)
T 3obv_E          416 QLIDMNAEGDETGVMDSLLEALQS  439 (457)
T ss_dssp             TSCCTTSCSCCCCHHHHHHHHHHH
T ss_pred             hhhcccCCccccccHHHHHHHHhc
Confidence            999999989999999999999999

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A

Probab=100.00  E-value=1.4e-50  Score=471.81  Aligned_cols=257  Identities=28%  Similarity=0.499  Sum_probs=208.8

Q ss_pred             CccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccC-CCCcchhHHHHH
Q psy15122        591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDI-ENKTTLLHYLVD  669 (927)
Q Consensus       591 pe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~-d~k~TLLh~l~~  669 (927)
                      ++.+.+|+++|.++..||++|++|++|+.||++||++|||||+| .+|+|+||+|+||.||.||||+ |+++||||||++
T Consensus       189 ~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks~~d~k~TLLhylv~  267 (483)
T 2j1d_G          189 AERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTKSSIDKNITLLHYLIT  267 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGGGGGGGGSBCSSCTTCBHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHHHHhhhhcccCCCCCccHHHHHHH
Confidence            38899999999999999999999999999999999999999999 7899999999999999999995 999999999999


Q ss_pred             HHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHH
Q psy15122        670 TIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITL  749 (927)
Q Consensus       670 ~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~  749 (927)
                      +|+++||++++|.+||.+|..|++|++++|.+++++|.+++..++.+++...... .+++|.|..+|..|+..|..++..
T Consensus       268 ~v~~~~p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~-~~~~d~f~~~m~~Fl~~a~~~~~~  346 (483)
T 2j1d_G          268 IVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQP-PQPGDKFVSVVSQFITVASFSFSD  346 (483)
T ss_dssp             HHHHHCGGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCchhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998764321 357789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        750 LSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLRE-AEEKSIRVREAREKAENEKKDKAAR  828 (927)
Q Consensus       750 L~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e-~eek~rr~~~akekaerek~er~~~  828 (927)
                      |+..+..+.+.|.+++.||||||+++++++||++|.+|+..|++|++||.+.++ +|++++|++.+++..++..++|+++
T Consensus       347 L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~~~~~~e~eekr~~~e~~~~~~~~~~r~~~  426 (483)
T 2j1d_G          347 VEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMR  426 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999987433 2222233333322222223344443


Q ss_pred             hhhhccCCCCCCccchHHHHHHHHhc
Q psy15122        829 KKALIDMTTDQTQQGVMDSLLEALQT  854 (927)
Q Consensus       829 kk~~~~~~~~~~~~~v~D~Ll~~Lrs  854 (927)
                      +     ...+++++||||+||++||+
T Consensus       427 ~-----~~~~~~~~g~~D~Ll~~Lr~  447 (483)
T 2j1d_G          427 K-----AKENSEESGEFDDLVSALRS  447 (483)
T ss_dssp             H-----C-------------------
T ss_pred             c-----CCCCCcccccHHHHHHHHhC
Confidence            3     12346788999999999999

>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1

Probab=100.00  E-value=6.4e-49  Score=439.23  Aligned_cols=234  Identities=46%  Similarity=0.752  Sum_probs=199.0

Q ss_pred             CccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHH
Q psy15122        591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDT  670 (927)
Q Consensus       591 pe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~  670 (927)
                      ++.+.+|+++|.++..||++|++|++|+.||++||++|||||+|+++|+|+||+|+||.||.||||+|+++||||||+++
T Consensus       107 ~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~lv~~  186 (340)
T 1v9d_A          107 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL  186 (340)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCHHHHHHSBCSSTTSBHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehHHHHhhhhhcCCCCCccHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHH
Q psy15122        671 IEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLL  750 (927)
Q Consensus       671 v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L  750 (927)
                      |+++||++++|.+||.+|..|++||+++|.+++.+|.+++..++.+++.....  .++.|.|..+|.+|+..|..++..|
T Consensus       187 ~~~~~p~l~~f~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~--~~~~d~f~~~m~~Fl~~a~~~~~~l  264 (340)
T 1v9d_A          187 CENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAA--TDEKDKFVEKMTSFVKDAQEQYNKL  264 (340)
T ss_dssp             HHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCC--SSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCchhccchhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999876433  5678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        751 SNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKA  826 (927)
Q Consensus       751 ~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~rr~~~akekaerek~er~  826 (927)
                      +..+..+.+.|.+++.||||||+++++++||++|.+|+..|++|++||.+++++|++.||+++|+|++++++.||+
T Consensus       265 ~~~~~~~~~~~~~l~~yfged~~~~~~~~fF~~~~~F~~~f~~a~~en~~r~e~eek~~~~~~~~e~~~~~~~~~~  340 (340)
T 1v9d_A          265 RMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ  340 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988876653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=100.00  E-value=2.8e-45  Score=388.98  Aligned_cols=229  Identities=38%  Similarity=0.723  Sum_probs=207.6

Q ss_pred             ChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCc--chhhHHHHHH
Q psy15122        135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRND--SRYDRVQYEC  212 (927)
Q Consensus       135 ~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~--~~~~~~~~e~  212 (927)
                      +|+|||++|+++ .+.+.++++|++|||+|||+|++||++|+.+|+++|+++ |..+..    +....  ..+...+|+|
T Consensus         1 ~P~~yi~~L~~~-~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~-L~~~~~----~~~~~~~~~~~~~~~~~   74 (233)
T 2f31_A            1 SAMMYIQELRSG-LRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDI-LKRLHD----EKEETSGNYDSRNQHEI   74 (233)
T ss_dssp             CHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHT----CC-----CCHHHHHHHH
T ss_pred             CHHHHHHHHHhc-cchHHHHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHH-HHHHHh----cccccchhhhHHHHHHH
Confidence            699999999887 356678899999999999999999999988999999995 333221    11111  3367789999


Q ss_pred             HHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCC-Cc-hHHHHHHHHhhcccccCcChHH
Q psy15122        213 VRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPP-DG-HDKVIKAITMSGELKGKERFQP  290 (927)
Q Consensus       213 vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~-~G-h~~VL~Al~~~~~~~e~~RF~~  290 (927)
                      |+|||||||+++|++.|+.|+++|+.|+.++++++++++++|+|+|+++|+++. +| |++||+||++++..+++.||++
T Consensus        75 l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~  154 (233)
T 2f31_A           75 IRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQP  154 (233)
T ss_dssp             HHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred             HHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHH
Confidence            999999999999999999999999999999999999999999999999999985 49 9999999999988899999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhhhHhHHHHH
Q psy15122        291 VVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF  370 (927)
Q Consensus       291 lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~~~~D~~el  370 (927)
                      ||++| ....+.+|+++||.|||+||++++|+++|+|||+||.++||.+++++|+..++++|++||++|++.+++|++||
T Consensus       155 lv~~l-~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~fe~~~~eD~~el  233 (233)
T 2f31_A          155 LLDGL-KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDL  233 (233)
T ss_dssp             HHHTT-STTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHH-hcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHHHHHHHhCHhhC
Confidence            99999 45678999999999999999999999999999999999999999999999999999999999999999999885

>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A

Probab=100.00  E-value=2.5e-42  Score=395.80  Aligned_cols=215  Identities=25%  Similarity=0.374  Sum_probs=201.9

Q ss_pred             CCccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHH
Q psy15122        590 MPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVD  669 (927)
Q Consensus       590 lpe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~  669 (927)
                      +++.+.+|+++|.++..||++|++|++|++||++||++|||||+|++  +|+||+|+||.||.||||+|+++||||||++
T Consensus       189 f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~  266 (411)
T 1ux5_A          189 YEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEK  266 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCcccCCCC--CeeEeehhHHHHHHHhhCCCCCccHHHHHHH
Confidence            44889999999999999999999999999999999999999999986  7999999999999999999999999999999


Q ss_pred             HHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcchhHHHHHhhhHHHHHHHH
Q psy15122        670 TIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQA--PVANENDKFLEIMEPFAKEVRQKI  747 (927)
Q Consensus       670 ~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~--~~~~~~D~f~~~m~~F~~~a~~~~  747 (927)
                      +|+++||++++|.+||++|..|++|++++|.+++++|.+++..++++++....+  ...+++|.|..+|.+|+..|..++
T Consensus       267 ~v~~~~p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~  346 (411)
T 1ux5_A          267 IVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKG  346 (411)
T ss_dssp             HHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999864322  123677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCC-CCcccchhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        748 TLLSNMSKNMMTLYGDLAEFYTFDKN-IYTLEEFFTDIKTFKDSFYQAWQENIKLREAEE  806 (927)
Q Consensus       748 ~~L~~~~~~~~~~~~~l~~yfgEd~~-~~~~eefF~~~~~F~~~f~~a~~en~~~~e~ee  806 (927)
                      ..|+..++.+.+.|.+++.||||||+ ++++++||++|.+|+..|++|++||.+++|+++
T Consensus       347 ~~l~~~~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~~~  406 (411)
T 1ux5_A          347 DLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEER  406 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 478999999999999999999999998877654

>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=386.42  Aligned_cols=206  Identities=27%  Similarity=0.403  Sum_probs=193.1

Q ss_pred             CccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHH
Q psy15122        591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDT  670 (927)
Q Consensus       591 pe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~  670 (927)
                      ++.+.+|+++|.++..||++|++|++|+.||++||++|||||+| .+|+|+||+|+||.||.||||+|+++||||||+++
T Consensus       185 ~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~  263 (402)
T 4eah_A          185 QDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALT  263 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSBCTTSSSBHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHhccCCCCCccHHHHHHHH
Confidence            38899999999999999999999999999999999999999998 67999999999999999999999999999999999


Q ss_pred             HHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHH
Q psy15122        671 IEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLL  750 (927)
Q Consensus       671 v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L  750 (927)
                      |+++||++++|.+||.+|..|++||+++|.+++++|.+++..+++++...      +     ..+|..|+..|..++..|
T Consensus       264 ~~~~~p~l~~f~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l~~~~~e~~~~------d-----~~~l~~Fl~~a~~~~~~L  332 (402)
T 4eah_A          264 VKEKYPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSIH------D-----NSVLRNFLSTNEGKLDKL  332 (402)
T ss_dssp             HHHHCGGGGTCSTTCCSHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTT------C-----CTTTHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHhhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccc------c-----hHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887531      1     137999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        751 SNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKS  808 (927)
Q Consensus       751 ~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~  808 (927)
                      +..++.+.+.|.+++.||||||+++++++||++|.+|+..|++|++||++|+++|+..
T Consensus       333 ~~~~~~~~~~~~~l~~yFgedpk~~~~~~fF~~~~~F~~~fk~A~~en~~r~~~e~~~  390 (402)
T 4eah_A          333 QRDAKTAEEAYNAVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQENEARKKQEEVM  390 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988877643

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=99.73  E-value=1.6e-18  Score=196.07  Aligned_cols=275  Identities=19%  Similarity=0.262  Sum_probs=177.4

Q ss_pred             HHhhcCCHHHHHHHHHHhhccCCCCcccccccccCchhhhhhhhhhccccc-----cccccccchhhhccCCCHHHHHHH
Q psy15122         12 NMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGT-----VTSYENKKQENMLEKLNPEQLNQK   86 (927)
Q Consensus        12 ~~~~~~~~~~~~~~f~~~~~~~n~~~~~~~~~~~~~~~~K~~m~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ei~~~   86 (927)
                      ..+++|||+||+++|++||+|||++++||+|||.+|.++|++||.+|.+++     ..+...+|.+|+....+. -...+
T Consensus         5 ~~~~~~se~ev~~~F~~mL~~mnl~~ek~~~l~~~~~e~Kw~mi~~~~~~~~~~~~~~~~~~sP~~yi~~L~~~-~~~~k   83 (383)
T 3eg5_B            5 QSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSRSAMMYIQELRSG-LRDMH   83 (383)
T ss_dssp             ----------CCHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHHHHHHHC---------CCCHHHHHHHHTTT-CCHHH
T ss_pred             hhcccCCHHHHHHHHHHHHHHcCCCHHHHHHHHhCCHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHHHhc-ccchh
Confidence            457789999999999999999999999999999999999999999998652     234466788887765533 12334


Q ss_pred             HHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccccccccccCCCChHHHHHHhc----CC-----ccchhhhhhhH
Q psy15122         87 FEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLS----QP-----ELSVNKMYSCI  157 (927)
Q Consensus        87 F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~----~~-----~~~~~~~~~~l  157 (927)
                      ..++|++|.+.      |++.|.                +|+..|...+...++..|.    .+     .......+.||
T Consensus        84 l~~~L~sL~v~------Lrt~~~----------------sWV~~F~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l  141 (383)
T 3eg5_B           84 LLSCLESLRVS------LTSHPV----------------SWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEII  141 (383)
T ss_dssp             HHHHHHHHHHH------HHHSCH----------------HHHHHHHHHHHHHHHHHHHHHHTCC-------CHHHHHHHH
T ss_pred             HHHHHHHHHHH------HhhCcc----------------HHHHHHHHccHHHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence            45788888777      888888                7777776666766666663    11     11235778999


Q ss_pred             HHHHHHhccCCchhHHHHhh---hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHh---hHHHHhc
Q psy15122        158 ESLRIALTNHPLSWVNEFVL---QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTV---GLKQMFG  231 (927)
Q Consensus       158 ~~Lrv~L~t~~~sWv~~F~~---~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~---Gl~~vl~  231 (927)
                      +|||+.|++   .++.+.+.   +++..|..        .+      +.....+...++..|-++|....   |+..|+ 
T Consensus       142 ~CLkalmN~---~~G~~~vl~~~~~i~~l~~--------~L------~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL-  203 (383)
T 3eg5_B          142 RCLKAFMNN---KFGIKTMLETEEGILLLVR--------AM------DPAVPNMMIDAAKLLSALCILPQPEDMNERVL-  203 (383)
T ss_dssp             HHHHHHTSS---HHHHHHHHTCSSHHHHHHH--------TC------CTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHH-
T ss_pred             HHHHHHhcc---hhhHHHHHcChHHHHHHHH--------Hh------CCCchHHHHHHHHHHHHHHhCcCcCCcHHHHH-
Confidence            999999999   77777663   34444322        23      22224455678899999999875   699988 


Q ss_pred             chhHHHHHHHhcCCCChhHHHHHHHH-----hhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHH
Q psy15122        232 QKEALTIVARSLDPNKPTVMLEAVKV-----LAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRT  306 (927)
Q Consensus       232 ~~~~i~~la~sl~~~~~~~~~~vlel-----Laalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~  306 (927)
                        +|++....+-...++......++-     +.+.|+.       +|+++.+..+-          ..+|.+.++...+.
T Consensus       204 --~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~-------lIN~li~~~~d----------l~~R~~lR~ef~~~  264 (383)
T 3eg5_B          204 --EAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ-------LINALITPAEE----------LDFRVHIRSELMRL  264 (383)
T ss_dssp             --HHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHH-------HHHHHHTTCCC----------HHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHH-------HHHHHHcCCCC----------HHHHHHHHHHHHHC
Confidence              456655554455566654433221     2222332       55665554210          01112223344556


Q ss_pred             HHHHHHHHHHc-CchhHHHHHHHHHHHHHhChHHHHHHHhh
Q psy15122        307 ACLQLINAIVA-TPDDLEFRLHLRNEIMRVGLYDLLDALEK  346 (927)
Q Consensus       307 ~~m~lIN~Lv~-s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~  346 (927)
                      ++...|..+-. ..+++..++.++.+....+..++.+++..
T Consensus       265 Gl~~il~~lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~  305 (383)
T 3eg5_B          265 GLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDD  305 (383)
T ss_dssp             THHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhcCCChhHHHHHHHHHHHHHHhHHHHHhhccc
Confidence            67777777633 47899999999999999999988887743

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=99.56  E-value=9.2e-14  Score=151.01  Aligned_cols=211  Identities=16%  Similarity=0.169  Sum_probs=176.8

Q ss_pred             ChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHh-hhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHH
Q psy15122        135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFV-LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECV  213 (927)
Q Consensus       135 ~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~-~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~v  213 (927)
                      ....++.+|.+.+  .+.+...|-+|+..+. ....|+.+|+ .+|+..|+.+    . +         ..+...|..++
T Consensus       119 ra~~iiekL~~~~--~~~lr~aLfsLk~~~q-~D~~Fa~EFI~~~GL~~Li~v----i-~---------~~~gN~q~Y~L  181 (339)
T 3dad_A          119 RVNAILEKLYSSS--GPELRRSLFSLKQIFQ-EDKDLVPEFVHSEGLSCLIRV----G-A---------AADHNYQSYIL  181 (339)
T ss_dssp             HHHHHHHHHHHCC--HHHHHHHHHHHHHHHH-TCTTHHHHHHHTTHHHHHHHH----H-T---------TSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCC--cHHHHHHHHHHHHHhh-cchHHHHHHHHhccHHHHHHH----H-H---------hcChHHHHHHH
Confidence            3466777776543  3344566788887554 4579999999 5899999885    2 2         12456789999


Q ss_pred             HHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHH
Q psy15122        214 RCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQ  293 (927)
Q Consensus       214 kCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~  293 (927)
                      ++|..||..-+|++.|++|++.|..|+..+++....+...+|+||-++|.+++.|+..|..|++.+....+..+|+.+|.
T Consensus       182 ~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~  261 (339)
T 3dad_A          182 RALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVS  261 (339)
T ss_dssp             HHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHH
T ss_pred             HHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHH
Confidence            99999999999999999999999999999988777777889999999999998899999999999876678888999999


Q ss_pred             HHh-ccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHH-Hhhc-CChhHHHHHHHHhhh
Q psy15122        294 GLM-VKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDA-LEKD-ASEDVSVQLKVFIEH  362 (927)
Q Consensus       294 ~L~-~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~-L~~~-~~~~L~~ql~~f~~~  362 (927)
                      -|. +...+.++++.+|.|||+++...+|-+-|-++..++...|+..++.+ |... .+.+|..|+.+|+..
T Consensus       262 ~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE~~  333 (339)
T 3dad_A          262 ILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYENA  333 (339)
T ss_dssp             HHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            993 23579999999999999999988888878899999999999999987 5544 577999999999974

>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}

Probab=99.16  E-value=7e-09  Score=102.12  Aligned_cols=280  Identities=17%  Similarity=0.312  Sum_probs=193.8

Q ss_pred             CCHHH-HHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccc------------cccccccCCCChHHHHHHhc
Q psy15122         78 LNPEQ-LNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV------------TSYENKSKFDKPIEYIQYLS  144 (927)
Q Consensus        78 ~~~~e-i~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~------------~~~~~~~~~~~P~~~i~~L~  144 (927)
                      |+++| +.++|.-+..+|.+.-     -.-..+-..|.+++.|..++.            +.|.+  .-..|.++.+.|+
T Consensus         4 mppeevvqqkfaivakemkidn-----pelitipnqwklvqeyekkqkkdiriqlnaqktgnwrn--aitdpkyladllk   76 (353)
T 4dvg_B            4 MPPEEVVQQKFAIVAKEMKIDN-----PELITIPNQWKLVQEYEKKQKKDIRIQLNAQKTGNWRN--AITDPKYLADLLK   76 (353)
T ss_dssp             ----CCCCGGGHHHHHHTTCSC-----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--HTTSHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhcCCC-----cceEecccHHHHHHHHHHhhccceEEEecchhcCChhh--ccCChHHHHHHHh
Confidence            43444 6678999999998763     122346678999999876632            44442  2346777777776


Q ss_pred             CCccchhhhhhhHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcH
Q psy15122        145 QPELSVNKMYSCIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNT  223 (927)
Q Consensus       145 ~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~  223 (927)
                      ..+-     ...|...-|..|+.+++|++-|+. +|+..|+.+ +.   ..+...  +....-.-+..|-..||-+.--.
T Consensus        77 trdd-----mdllnemvvvfrsssvsfiktfvsvgglanlmai-yk---kkieae--nsntaideerkccevlryvfaee  145 (353)
T 4dvg_B           77 TRDD-----MDLLNEMVVVFRSSSVSFIKTFVSVGGLANLMAI-YK---KKIEAE--NSNTAIDEERKCCEVLRYVFAEE  145 (353)
T ss_dssp             TCCC-----HHHHHHHHHHHHHSCHHHHHHHHHTSTHHHHHHH-HH---HHHHSC--CCHHHHHHHHHHHHHHHHHTTSH
T ss_pred             ccch-----HHHhhhheEEEeccchhHHHHHhhhccHHHHHHH-HH---HHhhcc--ccccchhhHHHHHHHHHHHHhcc
Confidence            5432     235677888899999999999995 788877663 21   111000  11111122455767777666666


Q ss_pred             hhHHHHhcchhHHHHHHHhcCCCChhHHHH---HHHHhhhhcccCC--------CchHHHHHHHHhhcccc-cCcChHHH
Q psy15122        224 VGLKQMFGQKEALTIVARSLDPNKPTVMLE---AVKVLAAVCLIPP--------DGHDKVIKAITMSGELK-GKERFQPV  291 (927)
Q Consensus       224 ~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~---vlelLaalc~~~~--------~Gh~~VL~Al~~~~~~~-e~~RF~~l  291 (927)
                      .....++.-...+..+...+++.+..+--+   .+|+-..-+++..        +|.-.|++||.+.-..+ .-..|-+.
T Consensus       146 datvalieidggvelllkgmnskritpdnqldilleitltssmvehpsqeglylggdvcvmnafsnlvsegvdmkkflsf  225 (353)
T 4dvg_B          146 DATVALIEIDGGVELLLKGMNSKRITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLSF  225 (353)
T ss_dssp             HHHHHHHTSTTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHHHHHTTSCSSTTHHH
T ss_pred             cceEEEEEecccHHHHhcccccCcCCCccccceeeeEeehhhhhcCccccceeecCceeeehhhHHHHhccccHHHHHHH
Confidence            666666666677888888888887766432   3455222233321        47788999998886443 45668887


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCC---hhHHHHHHHHhhhhHhHHH
Q psy15122        292 VQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDAS---EDVSVQLKVFIEHKEEDYY  368 (927)
Q Consensus       292 v~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~---~~L~~ql~~f~~~~~~D~~  368 (927)
                      ...+ +...++.++.+.+.+||.||..| +++-|+.+|+.|...||..-++.+++.++   +.+...|.-|-...++|-.
T Consensus       226 fslf-sksksekfkhaslvlinnlidqp-elehrmdvrnsfieiglvnelenmkntewmkidkikdsindffdsweedkk  303 (353)
T 4dvg_B          226 FSLF-SKSKSEKFKHASLVLINNLIDQP-ELEHRMDVRNSFIEIGLVNELENMKNTEWMKIDKIKDSINDFFDSWEEDKK  303 (353)
T ss_dssp             HHHH-HHCCCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTTTHHHHHHHHHTSGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-hhhhhhhcccceeehhhccccch-hhHhhhhhhhhheeeehhhHhhhccCccceehhhHHhhHHHHHhhHHhhHH
Confidence            7766 67889999999999999998776 59999999999999999999999998544   5566677778778889999


Q ss_pred             HHHHhchhc
Q psy15122        369 EFIQRFDNV  377 (927)
Q Consensus       369 el~~r~~~~  377 (927)
                      |.-.||++.
T Consensus       304 evesrfddl  312 (353)
T 4dvg_B          304 EVESRFDDL  312 (353)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHhhhhH
Confidence            999999763

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=98.35  E-value=1.4e-07  Score=106.66  Aligned_cols=220  Identities=16%  Similarity=0.206  Sum_probs=138.2

Q ss_pred             cccchhhhccCCCHHHHHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccccccccccCCCChHHHHHHhc--
Q psy15122         67 ENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLS--  144 (927)
Q Consensus        67 ~~~~~~~~~~~~~~~ei~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~--  144 (927)
                      +.+|..|+...++. .....+.++|.+|.+.      |++.|.                +|+..|...+-...+..|.  
T Consensus         3 ~~~P~~yv~~L~~~-~~~~~~~~~L~~L~v~------Lrt~~~----------------~Wv~~F~~~Gl~~Ll~~L~~~   59 (386)
T 2bnx_A            3 SRSAMMYIQELRSG-LRDMHLLSCLESLRVS------LNNNPV----------------SWVQTFGAEGLASLLDILKRL   59 (386)
T ss_dssp             CCCHHHHHHHHTSC-CCHHHHHHHHHHHHHH------HHHSCH----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc-cchHHHHHHHHHHhHH------HhcCCc----------------HHHHHHHHhHHHHHHHHHHHH
Confidence            45677776665533 2233467788888888      898888                6776665555555555442  


Q ss_pred             --CC-----ccchhhhhhhHHHHHHHhccCCchhHHHHhh---hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHH
Q psy15122        145 --QP-----ELSVNKMYSCIESLRIALTNHPLSWVNEFVL---QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVR  214 (927)
Q Consensus       145 --~~-----~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~---~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vk  214 (927)
                        .+     .......+.|++|||..|++   .++.+.+.   .++..|.        ..+      +.....+...++.
T Consensus        60 ~~~~~~~~~~~d~~~~~~~l~CLkalmN~---~~Gl~~vl~~~~~i~~l~--------~sL------~s~~~~~r~~vle  122 (386)
T 2bnx_A           60 HDEKEETSGNYDSRNQHEIIRCLKAFMNN---KFGIKTMLETEEGILLLV--------RAM------DPAVPNMMIDAAK  122 (386)
T ss_dssp             HTCCTTTCCTTHHHHHHHHHHHHHHHTSS---HHHHHHHHHSSSHHHHHH--------HTC------CTTSHHHHHHHHH
T ss_pred             HhcccccccchhHHHHHHHHHHHHHHhCC---HHHHHHHHcCcHHHHHHH--------HHh------CCCCchHHHHHHH
Confidence              11     11234678999999999999   78777763   3444332        223      2222345556888


Q ss_pred             HHHHHHhcHh--h-HHHHhcchhHHHHHHHhcCCCChhHHHHHHHH-----hhhhcccCCCchHHHHHHHHhhcccccCc
Q psy15122        215 CIRAIMNNTV--G-LKQMFGQKEALTIVARSLDPNKPTVMLEAVKV-----LAAVCLIPPDGHDKVIKAITMSGELKGKE  286 (927)
Q Consensus       215 CLkaimN~~~--G-l~~vl~~~~~i~~la~sl~~~~~~~~~~vlel-----Laalc~~~~~Gh~~VL~Al~~~~~~~e~~  286 (927)
                      -|-++|....  | +..|+   ++++....+-...++.+.+..++-     +.+.|+.       +|+++.+...     
T Consensus       123 LL~alc~~~~~~G~~~~VL---~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~-------lIN~lv~~~~-----  187 (386)
T 2bnx_A          123 LLSALCILPQPEDMNERVL---EAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ-------LINALITPAE-----  187 (386)
T ss_dssp             HHHHHHTCCSSTTHHHHHH---HHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHH-------HHHHHHTTCS-----
T ss_pred             HHHHHHcCCCCCChHHHHH---HHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHH-------HHHHHHCCCC-----
Confidence            8899999876  8 88887   455555555455566654443320     2233333       5666655421     


Q ss_pred             ChHHHHHHHhccCCCHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHhChHHHHHHHhh
Q psy15122        287 RFQPVVQGLMVKGNNEALRTACLQLINAIVA-TPDDLEFRLHLRNEIMRVGLYDLLDALEK  346 (927)
Q Consensus       287 RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~-s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~  346 (927)
                           .-.+|.+.++.....++...|..|-. ..++++.++.++.+....+..++.+++.+
T Consensus       188 -----dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~  243 (386)
T 2bnx_A          188 -----ELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDD  243 (386)
T ss_dssp             -----CHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence                 01122233445566777777777743 56899999999999999999888887654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=97.46  E-value=3.9e-05  Score=80.69  Aligned_cols=195  Identities=16%  Similarity=0.230  Sum_probs=119.5

Q ss_pred             HHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccccccccccCCCChHHHHHHhc----CC-----ccchhhhhhh
Q psy15122         86 KFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLS----QP-----ELSVNKMYSC  156 (927)
Q Consensus        86 ~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~----~~-----~~~~~~~~~~  156 (927)
                      .+.++|.++.++      |++.|.                +|+.+|...+-...+..|.    .+     .......++|
T Consensus        17 ~~~~~L~~L~v~------Lrt~~~----------------~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~   74 (233)
T 2f31_A           17 HLLSCLESLRVS------LNNNPV----------------SWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEI   74 (233)
T ss_dssp             HHHHHHHHHHHH------HHHSCH----------------HHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHH
T ss_pred             HHHHHHHHHhHh------HhcCCc----------------HHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence            456778888777      888887                6776665555555555542    11     1134567899


Q ss_pred             HHHHHHHhccCCchhHHHHhh---hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHh--h-HHHHh
Q psy15122        157 IESLRIALTNHPLSWVNEFVL---QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTV--G-LKQMF  230 (927)
Q Consensus       157 l~~Lrv~L~t~~~sWv~~F~~---~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~--G-l~~vl  230 (927)
                      ++|||+.+++   .++.+.+.   +++..|        ...+      +.........++..|-++|....  | +..|+
T Consensus        75 l~CLkalmn~---~~G~~~vl~~~~~i~~l--------~~~L------~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL  137 (233)
T 2f31_A           75 IRCLKAFMNN---KFGIKTMLETEEGILLL--------VRAM------DPAVPNMMIDAAKLLSALCILPQPEDMNERVL  137 (233)
T ss_dssp             HHHHHHHTSS---HHHHHHHHTSSSHHHHH--------HTTC------CTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHH
T ss_pred             HHHHHHHhCC---hHHHHHHHcCcHHHHHH--------HHHh------CCCCchHHHHHHHHHHHHHhCCCCCChHHHHH
Confidence            9999999999   78777763   334333        2233      22223455668899999999876  8 99987


Q ss_pred             cchhHHHHHHHhcCCCChhHHHHHHHH-----hhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHH
Q psy15122        231 GQKEALTIVARSLDPNKPTVMLEAVKV-----LAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALR  305 (927)
Q Consensus       231 ~~~~~i~~la~sl~~~~~~~~~~vlel-----Laalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~  305 (927)
                         ++++....+-...++.+....++-     +.+.|+.       +++++.+..+          .-.+|.+.+++..+
T Consensus       138 ---~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~-------lIN~li~~~~----------dl~~R~~lR~ef~~  197 (233)
T 2f31_A          138 ---EAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ-------LINALITPAE----------ELDFRVHIRSELMR  197 (233)
T ss_dssp             ---HHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHH-------HHHHHHTTCC----------CHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHH-------HHHHHHCCCC----------CHHHHHHHHHHHHH
Confidence               455555544455566554433210     2222332       5566555421          00112233344556


Q ss_pred             HHHHHHHHHHH-cCchhHHHHHHHHHHHHHhChHH
Q psy15122        306 TACLQLINAIV-ATPDDLEFRLHLRNEIMRVGLYD  339 (927)
Q Consensus       306 ~~~m~lIN~Lv-~s~~dl~~Ri~lR~Ef~~~GL~e  339 (927)
                      .+....|..+- ...++++.++.++.+.+..+..|
T Consensus       198 ~Gl~~il~~l~~~~~~~L~~Qi~~fe~~~~eD~~e  232 (233)
T 2f31_A          198 LGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFD  232 (233)
T ss_dssp             TTHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHhccCCHHHHHHHHHHHHHHHhCHhh
Confidence            67777777774 36789999999999988766554

>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}

Probab=94.93  E-value=0.014  Score=37.58  Aligned_cols=7  Identities=86%  Similarity=2.299  Sum_probs=2.6

Q ss_pred             CCCCCCC
Q psy15122        574 PPPPPMP  580 (927)
Q Consensus       574 ppppp~p  580 (927)
                      |||||.|
T Consensus        14 PpPpplP   20 (26)
T 2v8f_C           14 PPPPPLP   20 (26)
T ss_pred             CCCCCCC
Confidence            3333333

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=93.91  E-value=0.052  Score=61.93  Aligned_cols=14  Identities=14%  Similarity=0.271  Sum_probs=7.3

Q ss_pred             HHHHHHH-HHHHcCch
Q psy15122        306 TACLQLI-NAIVATPD  320 (927)
Q Consensus       306 ~~~m~lI-N~Lv~s~~  320 (927)
                      -+++.|| |-| .+++
T Consensus       274 e~A~~fl~~~l-~s~e  288 (449)
T 3iot_A          274 ELAKEFLENYL-LTDE  288 (449)
T ss_dssp             HHHHHHHHHTT-SSHH
T ss_pred             HHHHHHHHHHh-cCHH
Confidence            3556777 344 3443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=93.88  E-value=2  Score=43.87  Aligned_cols=175  Identities=14%  Similarity=0.189  Sum_probs=109.3

Q ss_pred             CCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHH
Q psy15122        133 FDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYE  211 (927)
Q Consensus       133 ~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e  211 (927)
                      ...-.+|+..|.+++.  ......+..|+..+.. .-.....++. +|+..|+.+    | .        + .+..++..
T Consensus        11 ~~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~l----L-~--------~-~~~~v~~~   73 (252)
T 4db8_A           11 GSELPQMTQQLNSDDM--QEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQL----L-S--------S-PNEQILQE   73 (252)
T ss_dssp             TCSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHG----G-G--------C-SCHHHHHH
T ss_pred             cchHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHH----H-c--------C-CCHHHHHH
Confidence            4455677888877653  3345567777665554 3345566665 556777663    2 2        1 12567889


Q ss_pred             HHHHHHHHHh-cHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCch-HHHHHHHHhhcccccCcChH
Q psy15122        212 CVRCIRAIMN-NTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGH-DKVIKAITMSGELKGKERFQ  289 (927)
Q Consensus       212 ~vkCLkaimN-~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh-~~VL~Al~~~~~~~e~~RF~  289 (927)
                      ++.||..|.. +......++ ...++..|...+.+.+..++..++..|..+|..+ ... ..+++    .      +-..
T Consensus        74 a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~----~------~~i~  141 (252)
T 4db8_A           74 ALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVID----A------GALP  141 (252)
T ss_dssp             HHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHH----T------THHH
T ss_pred             HHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-chHHHHHHH----C------CCHH
Confidence            9999999997 444444443 4578999999998889999999999999888764 222 22222    1      1123


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHH
Q psy15122        290 PVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDAL  344 (927)
Q Consensus       290 ~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L  344 (927)
                      .++..|  ...+..++..++..+-.|....++.      +..+...|....+-.+
T Consensus       142 ~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~~~i~~L~~l  188 (252)
T 4db8_A          142 ALVQLL--SSPNEQILQEALWALSNIASGGNEQ------IQAVIDAGALPALVQL  188 (252)
T ss_dssp             HHHHGG--GCSCHHHHHHHHHHHHHHTTSCHHH------HHHHHHTTCHHHHHHG
T ss_pred             HHHHHH--hCCCHHHHHHHHHHHHHHHcCChHH------HHHHHHCCCHHHHHHH
Confidence            455555  3457788888877777776544321      2334456666655544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=93.77  E-value=2.4  Score=42.02  Aligned_cols=182  Identities=14%  Similarity=0.220  Sum_probs=110.1

Q ss_pred             CChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHH
Q psy15122        134 DKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYEC  212 (927)
Q Consensus       134 ~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~  212 (927)
                      ..+..++..|.+.+.  ......+..|...... .-.....++. +|+..|+.+    | .        + .+..++..+
T Consensus        12 ~~~~~l~~LL~s~~~--~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~l----L-~--------~-~~~~v~~~a   74 (210)
T 4db6_A           12 SELPQMVQQLNSPDQ--QELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQL----L-S--------S-PNEQILQEA   74 (210)
T ss_dssp             -CHHHHHHHTTCSCH--HHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHH----T-T--------C-SCHHHHHHH
T ss_pred             chhHHHHHHhcCCCH--HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHH----H-c--------C-CCHHHHHHH
Confidence            344444555655442  3334556666654433 2244455554 567777663    2 1        1 135678889


Q ss_pred             HHHHHHHHh-cHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHH
Q psy15122        213 VRCIRAIMN-NTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPV  291 (927)
Q Consensus       213 vkCLkaimN-~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~l  291 (927)
                      +.||..|.. +......++ ..+++..|...+.+.++.++..++..|..+|...++...    ++...      +=+..+
T Consensus        75 ~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~------~~i~~L  143 (210)
T 4db6_A           75 LWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ----AVIDA------GALPAL  143 (210)
T ss_dssp             HHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH----HHHHT------THHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHH-HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHH----HHHHc------CcHHHH
Confidence            999999984 444445554 457899999999999999999999999988875422222    22221      123355


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChh
Q psy15122        292 VQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASED  351 (927)
Q Consensus       292 v~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~  351 (927)
                      +..|  ...+..++..++..+..|....++      .+..+...|..+.+..+-...++.
T Consensus       144 ~~ll--~~~~~~v~~~a~~aL~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~  195 (210)
T 4db6_A          144 VQLL--SSPNEQILQEALWALSNIASGGNE------QKQAVKEAGALEKLEQLQSHENEK  195 (210)
T ss_dssp             HHHT--TCSCHHHHHHHHHHHHHHHTSCHH------HHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred             HHHH--cCCCHHHHHHHHHHHHHHHcCCcH------HHHHHHHCCCHHHHHHHHhCCCHH
Confidence            5555  345777887777777777655442      345677888887777665544444

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=93.61  E-value=2.5  Score=42.79  Aligned_cols=175  Identities=15%  Similarity=0.209  Sum_probs=110.2

Q ss_pred             HHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHH
Q psy15122        137 IEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRC  215 (927)
Q Consensus       137 ~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkC  215 (927)
                      ..++..|.+++  .......+..|.......+ .....++. +|+..|+.+    | .        + .+..++..++.|
T Consensus         5 ~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~l----l-~--------~-~~~~v~~~a~~~   67 (252)
T 4hxt_A            5 EKLVKLLTSTD--SETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKL----L-T--------S-TDSEVQKEAARA   67 (252)
T ss_dssp             HHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHH----T-T--------C-SCHHHHHHHHHH
T ss_pred             HHHHHHHcCCC--HHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHH----H-h--------C-CCHHHHHHHHHH
Confidence            45667776654  3344556777776666544 45555664 567776663    2 2        1 125678899999


Q ss_pred             HHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHH
Q psy15122        216 IRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGL  295 (927)
Q Consensus       216 LkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L  295 (927)
                      |..|..........+...+++..|...+.+....++..++..|..+|...+.....+++    .      +-+..++..|
T Consensus        68 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~------~~i~~L~~~l  137 (252)
T 4hxt_A           68 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD----A------GGVEVLVKLL  137 (252)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH----T------THHHHHHHHT
T ss_pred             HHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH----C------CCHHHHHHHH
Confidence            99999873333344445678999999998888999999999999999654223333322    1      1133555555


Q ss_pred             hccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhh
Q psy15122        296 MVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK  346 (927)
Q Consensus       296 ~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~  346 (927)
                        ...+..++..++..+-.|....++.      +..+...|....+-.+-.
T Consensus       138 --~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~~i~~L~~ll~  180 (252)
T 4hxt_A          138 --TSTDSEVQKEAARALANIASGPDEA------IKAIVDAGGVEVLVKLLT  180 (252)
T ss_dssp             --TCSCHHHHHHHHHHHHHHTTSCHHH------HHHHHHTTHHHHHHHHTT
T ss_pred             --cCCCHHHHHHHHHHHHHHHcCCHHH------HHHHHHCcCHHHHHHHHC
Confidence              4556788888888887776554432      234555677666655533

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=92.45  E-value=1.8  Score=51.19  Aligned_cols=221  Identities=11%  Similarity=0.174  Sum_probs=137.0

Q ss_pred             CHHH-HHHHHHHHHHhCCCChhhhhhhhCC-ChHhHHHHHHHHHhccccccccccCCCChHHHHHHhcCCccchhhhhhh
Q psy15122         79 NPEQ-LNQKFEDMLNDMNLSDEKKEPLRRQ-PLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSC  156 (927)
Q Consensus        79 ~~~e-i~~~F~~lle~lnl~~~k~~~L~~~-p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~~~~~~~~~~~~~  156 (927)
                      +.+| |+.+...+ .+--+.+|+|..++.+ +..+||..              .-+..+...+|..|+.........-.+
T Consensus        18 s~~etI~~L~~Rl-~~~tl~eDRR~Av~~Lk~~sk~y~~--------------~Vg~~~l~~li~~L~~d~~D~e~v~~~   82 (651)
T 3grl_A           18 TEAETIQKLCDRV-ASSTLLDDRRNAVRALKSLSKKYRL--------------EVGIQAMEHLIHVLQTDRSDSEIIGYA   82 (651)
T ss_dssp             CHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHTTTTTTT--------------HHHHHTHHHHHHHHHSCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHH-hhccchhHHHHHHHHHHHHHHHhHH--------------HhhhhhHHHHHHHHhcccccHHHHHHH
Confidence            4444 66666666 4455777888887432 22222221              122345667888886654333333345


Q ss_pred             HHHHHHHhccCCc---------------hhH-HHHh--hhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHH
Q psy15122        157 IESLRIALTNHPL---------------SWV-NEFV--LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRA  218 (927)
Q Consensus       157 l~~Lrv~L~t~~~---------------sWv-~~F~--~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLka  218 (927)
                      |+.|-..+....-               -|. ..|+  .+|+..|++.     ++         ..+....+-.|+||.+
T Consensus        83 LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-----L~---------~~df~vR~~alqlL~~  148 (651)
T 3grl_A           83 LDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-----LE---------EFDFHVRWPGVKLLTS  148 (651)
T ss_dssp             HHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHH-----TT---------CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHH-----hc---------CccHHHHHHHHHHHHH
Confidence            6666555554331               233 3555  3688888773     22         1233456779999999


Q ss_pred             HHhcHhh--HHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHh
Q psy15122        219 IMNNTVG--LKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLM  296 (927)
Q Consensus       219 imN~~~G--l~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~  296 (927)
                      |+.+...  .+.|+..|.+|..|...|+..+-.++.+++-+|+.++--+     ..+..+..|     ..=|..++.-+.
T Consensus       149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n-----~~iQklVAF-----EnaFe~Lf~Ii~  218 (651)
T 3grl_A          149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN-----GAIQKIVAF-----ENAFERLLDIIT  218 (651)
T ss_dssp             HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC-----HHHHHHHHH-----TTHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC-----HHHHHHHHH-----hccHHHHHHHHH
Confidence            9988765  6667889999999999999888889999999998888754     244444444     122666666664


Q ss_pred             ccC--CCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHH
Q psy15122        297 VKG--NNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDAL  344 (927)
Q Consensus       297 ~~~--~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L  344 (927)
                      ..+  +--....-|+.+|+.|+..+.      .-++-|.+.|...-+..|
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~------sNQ~~FrEt~~i~~L~~L  262 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNN------SNQNFFKEGSYIQRMKPW  262 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCH------HHHHHHHHTTCGGGGGGG
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCH------HHHHHHHHcCCHHHHHHH
Confidence            322  234566789999999986643      235566766655544433

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=91.38  E-value=0.17  Score=57.53  Aligned_cols=14  Identities=14%  Similarity=0.299  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHH
Q psy15122        449 AYYKLLEECVSQIV  462 (927)
Q Consensus       449 ~~~~Lid~~v~qiv  462 (927)
                      .++..+...+..+.
T Consensus       338 ~~~~~~~~~~~~~~  351 (449)
T 3iot_A          338 AFWYAVRTAVINAA  351 (449)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34555555555444

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=90.88  E-value=8.7  Score=38.58  Aligned_cols=176  Identities=18%  Similarity=0.227  Sum_probs=106.2

Q ss_pred             hHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHH
Q psy15122        136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVR  214 (927)
Q Consensus       136 P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vk  214 (927)
                      ...++..|.+++  ......++..|...... .-.....++. +|+..|+.+    + .         ..+..++..++.
T Consensus        46 i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~l----l-~---------~~~~~v~~~a~~  108 (252)
T 4hxt_A           46 VEVLVKLLTSTD--SEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKL----L-T---------STDSEVQKEAAR  108 (252)
T ss_dssp             HHHHHHHTTCSC--HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHH----T-T---------CSSHHHHHHHHH
T ss_pred             HHHHHHHHhCCC--HHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHH----H-c---------CCCHHHHHHHHH
Confidence            445556666554  22333445555544332 2344444554 557776553    2 1         123567888999


Q ss_pred             HHHHHH-hcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHH
Q psy15122        215 CIRAIM-NNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQ  293 (927)
Q Consensus       215 CLkaim-N~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~  293 (927)
                      +|..|+ .+......++ ...++..|...+.+..+.++..++..|+.+|..++ +.   ...+...      +=+..++.
T Consensus       109 ~L~~l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~---~~~~~~~------~~i~~L~~  177 (252)
T 4hxt_A          109 ALANIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EA---IKAIVDA------GGVEVLVK  177 (252)
T ss_dssp             HHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HH---HHHHHHT------THHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HH---HHHHHHC------cCHHHHHH
Confidence            999999 4555555554 45789999999999999999999999999887542 22   1122211      11234555


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhc
Q psy15122        294 GLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKD  347 (927)
Q Consensus       294 ~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~  347 (927)
                      .|  ...+..++..++..+-.|....++      .+..+...|..+.+-.+-..
T Consensus       178 ll--~~~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~~~i~~L~~ll~~  223 (252)
T 4hxt_A          178 LL--TSTDSEVQKEAARALANIASGPTS------AIKAIVDAGGVEVLQKLLTS  223 (252)
T ss_dssp             HT--TCSCHHHHHHHHHHHHHHTTSBHH------HHHHHHHTTHHHHHHHGGGC
T ss_pred             HH--CCCCHHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHCC
Confidence            55  356678888888888777654432      34556667877766655443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=90.73  E-value=3.5  Score=47.77  Aligned_cols=137  Identities=16%  Similarity=0.169  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHHhc-HhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhccccc
Q psy15122        206 DRVQYECVRCIRAIMNN-TVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKG  284 (927)
Q Consensus       206 ~~~~~e~vkCLkaimN~-~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e  284 (927)
                      ..++.++..+|..|+-. ......++ ....+..|...+.+..+.++..+.-.|+.+|.-   |...-+..|...     
T Consensus       349 ~~i~~~a~~aL~nl~~~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~---~~~~~~~~l~~~-----  419 (529)
T 3tpo_A          349 TNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG---GTVEQIVYLVHC-----  419 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---CCHHHHHHHHHC-----
Confidence            45678888888888754 33344444 446788888888888899988887777666653   222222333332     


Q ss_pred             CcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHH
Q psy15122        285 KERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSV  354 (927)
Q Consensus       285 ~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~  354 (927)
                       +=..+++..|  ...+..++..++..|..|+...+.+.-.-.++.-|.++|..+.|+.|..++++++..
T Consensus       420 -g~i~~L~~LL--~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~  486 (529)
T 3tpo_A          420 -GIIEPLMNLL--SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK  486 (529)
T ss_dssp             -TCHHHHHHGG--GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHH
T ss_pred             -cCHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHH
Confidence             2234666666  445677777777777776643332222234556688999999999998888877543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=89.86  E-value=6.2  Score=40.05  Aligned_cols=181  Identities=15%  Similarity=0.183  Sum_probs=108.4

Q ss_pred             ChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHH
Q psy15122        135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECV  213 (927)
Q Consensus       135 ~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~v  213 (927)
                      ....++..|.++.  .......+..|......+ -.....++. +|+..|+.+    | .        + .+..++..++
T Consensus        55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~l----L-~--------~-~~~~v~~~a~  117 (252)
T 4db8_A           55 ALPALVQLLSSPN--EQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQL----L-S--------S-PNEQILQEAL  117 (252)
T ss_dssp             HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHG----G-G--------C-SCHHHHHHHH
T ss_pred             cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHH----H-c--------C-CCHHHHHHHH
Confidence            3455666776654  233334455555444322 233444554 567777663    2 2        1 2356788899


Q ss_pred             HHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHH
Q psy15122        214 RCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQ  293 (927)
Q Consensus       214 kCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~  293 (927)
                      .+|..|..+.......+...+++..|...+......++..++..|..+|..++..    ...+...      +=...++.
T Consensus       118 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~------~~i~~L~~  187 (252)
T 4db8_A          118 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----IQAVIDA------GALPALVQ  187 (252)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHHT------TCHHHHHH
T ss_pred             HHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH----HHHHHHC------CCHHHHHH
Confidence            9999998887666233445578999999998889899999999999888754112    2222221      22345555


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCCh
Q psy15122        294 GLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASE  350 (927)
Q Consensus       294 ~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~  350 (927)
                      .|  ...+..++..++..+-.|....++      .+..+...|..+.+..+-...++
T Consensus       188 ll--~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~  236 (252)
T 4db8_A          188 LL--SSPNEQILQEALWALSNIASGGNE------QKQAVKEAGALEKLEQLQSHENE  236 (252)
T ss_dssp             GG--GCSSHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHTTTTCSSS
T ss_pred             HH--CCCCHHHHHHHHHHHHHHhcCCHH------HHHHHHHCCcHHHHHHHhCCCCH
Confidence            55  344778888777777777644432      23455667777666655333333

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=89.69  E-value=6  Score=45.56  Aligned_cols=137  Identities=17%  Similarity=0.178  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHhc-HhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhccccc
Q psy15122        206 DRVQYECVRCIRAIMNN-TVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKG  284 (927)
Q Consensus       206 ~~~~~e~vkCLkaimN~-~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e  284 (927)
                      ..++.++..+|..|.-+ ......++ ....+..|...+.+..+.++..+.-.|+.+|..   |...-+..|...     
T Consensus       330 ~~v~~~A~~aL~nl~a~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~---~~~~~~~~L~~~-----  400 (510)
T 3ul1_B          330 TNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG---GTVEQIVYLVHC-----  400 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc---CCHHHHHHHHHC-----
Confidence            45678888888888653 43445554 346788888888888899998887777766653   222222333332     


Q ss_pred             CcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHH
Q psy15122        285 KERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSV  354 (927)
Q Consensus       285 ~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~  354 (927)
                       +=..+++..|  ...+..++..++..|..|+...+.+...-.++.-|.++|..+.|+.|..++++++..
T Consensus       401 -g~i~~L~~LL--~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~  467 (510)
T 3ul1_B          401 -GIIEPLMNLL--SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK  467 (510)
T ss_dssp             -TCHHHHHHGG--GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred             -CCHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHH
Confidence             2244666655  445677777777777777644333322334566788999999999998888877543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=85.76  E-value=11  Score=43.14  Aligned_cols=160  Identities=15%  Similarity=0.179  Sum_probs=102.3

Q ss_pred             CCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhh-hhhhhhcchhhhcCcCCCCCCCcchhhHHHHH
Q psy15122        133 FDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQD-NKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYE  211 (927)
Q Consensus       133 ~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~G-l~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e  211 (927)
                      ..+...++..|.+++  .......+..|+..+...+-.++..++..| +..|+.+    | .        +.....++.+
T Consensus        73 ~~~l~~lv~~L~s~~--~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~l----L-~--------~~~~~~v~~~  137 (528)
T 4b8j_A           73 LESLPAMIGGVYSDD--NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQF----L-T--------REDFPQLQFE  137 (528)
T ss_dssp             --CHHHHHHHHTSSC--HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHH----H-T--------CTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHH----h-C--------CCCCHHHHHH
Confidence            345677888887654  234456677888777766556777777544 6666552    3 1        2222567889


Q ss_pred             HHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHH
Q psy15122        212 CVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPV  291 (927)
Q Consensus       212 ~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~l  291 (927)
                      ++.||..|+.........+-...+|..|...+.+.+..++..++..|+.+|..++.....+++    .      +=..++
T Consensus       138 A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~----~------g~l~~L  207 (528)
T 4b8j_A          138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA----N------GALLPL  207 (528)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH----T------TCHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH----C------CcHHHH
Confidence            999999998864434444444578999999998889999999999999998653222222322    1      123355


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHcC
Q psy15122        292 VQGLMVKGNNEALRTACLQLINAIVAT  318 (927)
Q Consensus       292 v~~L~~~~~~~~~~~~~m~lIN~Lv~s  318 (927)
                      +..| ....+..++..+...+..|...
T Consensus       208 l~lL-~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          208 LAQL-NEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHTC-CTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHH-hcCCCHHHHHHHHHHHHHHHcC
Confidence            5555 3455677777777777666554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=85.16  E-value=3.6  Score=48.68  Aligned_cols=165  Identities=16%  Similarity=0.167  Sum_probs=107.0

Q ss_pred             CCChHHHHHHhc----CCcc-chhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCcchhhH
Q psy15122        133 FDKPIEYIQYLS----QPEL-SVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDR  207 (927)
Q Consensus       133 ~~~P~~~i~~L~----~~~~-~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~  207 (927)
                      ..++.+.|..|-    +..+ .++.  ..+..||-.-    -.|=..++..|+..|+++    | +       ++..+..
T Consensus        16 ~qs~~etI~~L~~Rl~~~tl~eDRR--~Av~~Lk~~s----k~y~~~Vg~~~l~~li~~----L-~-------~d~~D~e   77 (651)
T 3grl_A           16 QHTEAETIQKLCDRVASSTLLDDRR--NAVRALKSLS----KKYRLEVGIQAMEHLIHV----L-Q-------TDRSDSE   77 (651)
T ss_dssp             --CHHHHHHHHHHHHHHCCSHHHHH--HHHHHHHHTT----TTTTTHHHHHTHHHHHHH----H-H-------SCTTCHH
T ss_pred             CCChhhHHHHHHHHHhhccchhHHH--HHHHHHHHHH----HHhHHHhhhhhHHHHHHH----H-h-------cccccHH
Confidence            457788887763    2222 3332  3456666543    367777788899988774    3 2       2444555


Q ss_pred             HHHHHHHHHHHHHhcHh---------------h---HHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCC-c
Q psy15122        208 VQYECVRCIRAIMNNTV---------------G---LKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPD-G  268 (927)
Q Consensus       208 ~~~e~vkCLkaimN~~~---------------G---l~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~-G  268 (927)
                      +...++-.|-.+++...               |   .+.++..++.|..|...|.+..+.++.-++++|.++|.-.+. -
T Consensus        78 ~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~  157 (651)
T 3grl_A           78 IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQV  157 (651)
T ss_dssp             HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHH
Confidence            66667777766665421               2   234567888999999999999999999999999999987522 2


Q ss_pred             hHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHH
Q psy15122        269 HDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRL  326 (927)
Q Consensus       269 h~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri  326 (927)
                      .+.|+.+=.-         -..+|..|  ++..+.+|...+.+|-.|..+..+++-=+
T Consensus       158 Q~~Il~~p~g---------i~~Lv~lL--~d~rE~iRneallLL~~Lt~~n~~iQklV  204 (651)
T 3grl_A          158 QQIILVSPMG---------VSRLMDLL--ADSREVIRNDGVLLLQALTRSNGAIQKIV  204 (651)
T ss_dssp             HHHHHHSTTH---------HHHHHGGG--GCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhCccc---------HHHHHHHH--hCchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3334432111         12456555  55678888888888888887777655443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=84.63  E-value=4  Score=47.23  Aligned_cols=117  Identities=12%  Similarity=0.127  Sum_probs=84.1

Q ss_pred             CChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhh-hhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHH
Q psy15122        134 DKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQ-DNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYEC  212 (927)
Q Consensus       134 ~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~-Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~  212 (927)
                      ..-+..+..|.+++.  ...+.++..+|..|....-.=+..++.. ++..|+.+    | .        ......+|.++
T Consensus        76 ~~l~~lv~~l~s~d~--~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~l----L-~--------~~~~~~~q~~A  140 (529)
T 3tpo_A           76 WSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF----L-G--------KTDCSPIQFES  140 (529)
T ss_dssp             CCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHH----H-T--------CTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHH----H-c--------CCCCHHHHHHH
Confidence            456778888877653  3556788889888865544445666654 46666553    3 1        12236689999


Q ss_pred             HHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccC
Q psy15122        213 VRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIP  265 (927)
Q Consensus       213 vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~  265 (927)
                      ..||..|+........++-...+|..|...+.+.+..++..++..|+-+|..+
T Consensus       141 a~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~  193 (529)
T 3tpo_A          141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG  193 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence            99999998765555555556688999999999999999999998888888754

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=84.57  E-value=14  Score=39.50  Aligned_cols=159  Identities=14%  Similarity=0.204  Sum_probs=96.6

Q ss_pred             hhhHHHHHHHhccCCchhHHHHhh-hhhhhhhh-cchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHhhHHHHhc
Q psy15122        154 YSCIESLRIALTNHPLSWVNEFVL-QDNKNFRK-YPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFG  231 (927)
Q Consensus       154 ~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~-~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl~  231 (927)
                      ...+..|...+.+  +.|...|+. +|+..|+. +     +.         ..+..++..++.||..|..+.......+-
T Consensus        58 ~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~l-----L~---------s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv  121 (296)
T 1xqr_A           58 EGALELLADLCEN--MDNAADFCQLSGMHLLVGRY-----LE---------AGAAGLRWRAAQLIGTCSQNVAAIQEQVL  121 (296)
T ss_dssp             HHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTT-----TT---------CSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHH-----Hc---------CCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3456666666653  578889985 66766654 3     22         12356778899999988755433444333


Q ss_pred             chhHHHHHHHhcCC-CChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHH
Q psy15122        232 QKEALTIVARSLDP-NKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQ  310 (927)
Q Consensus       232 ~~~~i~~la~sl~~-~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~  310 (927)
                      ..+++..|...+.+ ....++..++-.|+.+|--.+.+...|++    .      .=+.+++..|  ...+..++..+..
T Consensus       122 ~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~----~------ggi~~L~~lL--~~~d~~v~~~A~~  189 (296)
T 1xqr_A          122 GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR----L------DGFSVLMRAM--QQQVQKLKVKSAF  189 (296)
T ss_dssp             HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH----T------THHHHHHHHH--HSSCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH----C------CCHHHHHHHH--cCCCHHHHHHHHH
Confidence            44788888888764 46777888888888887533223333332    2      1134666666  3356777776666


Q ss_pred             HHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhh
Q psy15122        311 LINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK  346 (927)
Q Consensus       311 lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~  346 (927)
                      +|-.|....++      .+..+...|....+-.|-.
T Consensus       190 aLs~L~~~~~~------~~~~vv~~g~i~~Lv~LL~  219 (296)
T 1xqr_A          190 LLQNLLVGHPE------HKGTLCSMGMVQQLVALVR  219 (296)
T ss_dssp             HHHHHHHHCGG------GHHHHHHTTHHHHHHHHHT
T ss_pred             HHHHHHhCChH------HHHHHHHcCCHHHHHHHHc
Confidence            66666544332      3445667787776665533

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=81.23  E-value=30  Score=39.47  Aligned_cols=136  Identities=13%  Similarity=0.146  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHhc-HhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhccccc
Q psy15122        206 DRVQYECVRCIRAIMNN-TVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKG  284 (927)
Q Consensus       206 ~~~~~e~vkCLkaimN~-~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e  284 (927)
                      ..++.+++.+|..|... ......++. ...+..|...+....+.++..++..|+.+|..   |.......|...     
T Consensus       343 ~~v~~~A~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~---~~~~~~~~l~~~-----  413 (528)
T 4b8j_A          343 KSIKKEACWTISNITAGNKDQIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG---GSHDQIKYLVSE-----  413 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC---CCHHHHHHHHHC-----
Confidence            55678888888888753 334445543 36677788777777888888888888888775   222233333222     


Q ss_pred             CcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHH-----HHHHHHHHhChHHHHHHHhhcCChhHH
Q psy15122        285 KERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRL-----HLRNEIMRVGLYDLLDALEKDASEDVS  353 (927)
Q Consensus       285 ~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri-----~lR~Ef~~~GL~eil~~L~~~~~~~L~  353 (927)
                       .-+.+++..|  ...+..++..++..|..|+...+......     .....+..+|..+.+..|....++++.
T Consensus       414 -~~i~~L~~lL--~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~  484 (528)
T 4b8j_A          414 -GCIKPLCDLL--ICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIY  484 (528)
T ss_dssp             -TCHHHHHHGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHH
T ss_pred             -CCHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHH
Confidence             2345666666  44677888888888888865444322211     256677888988888888877776644

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=81.05  E-value=6.3  Score=45.40  Aligned_cols=118  Identities=12%  Similarity=0.108  Sum_probs=80.8

Q ss_pred             CCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhh-hhhhhhhcchhhhcCcCCCCCCCcchhhHHHHH
Q psy15122        133 FDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQ-DNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYE  211 (927)
Q Consensus       133 ~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~-Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e  211 (927)
                      .-+-+++|..|.+++.  ...+++...+|..|....--=++..+.. ++..|+.+    | .        ......+|.+
T Consensus        56 ~~~i~~~v~~l~s~d~--~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~l----L-~--------~~~~~~lq~~  120 (510)
T 3ul1_B           56 NWSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF----L-G--------KTDCSPIQFE  120 (510)
T ss_dssp             SCCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHH----T-T--------CTTCHHHHHH
T ss_pred             hhhHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHH----H-C--------CCCCHHHHHH
Confidence            3467889999988754  3456788888888843222223455544 46666663    2 2        1223568999


Q ss_pred             HHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccC
Q psy15122        212 CVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIP  265 (927)
Q Consensus       212 ~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~  265 (927)
                      +..||..|.-........+-...+|..|...|.+++..++..++..|.-+|..+
T Consensus       121 Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~  174 (510)
T 3ul1_B          121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG  174 (510)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            999999987543334444445578999999999999999999988888887654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=80.83  E-value=17  Score=35.54  Aligned_cols=121  Identities=17%  Similarity=0.201  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHHHh-cHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccc
Q psy15122        205 YDRVQYECVRCIRAIMN-NTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELK  283 (927)
Q Consensus       205 ~~~~~~e~vkCLkaimN-~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~  283 (927)
                      +..++..++.+|..|+. +......++ ...+|..|...+.+.++.++..++..|+.+|...+.....++    ..    
T Consensus        25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~----~~----   95 (210)
T 4db6_A           25 DQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI----DA----   95 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH----HT----
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH----HC----
Confidence            35678899999999994 444555554 447899999999988999999999999988865422222222    21    


Q ss_pred             cCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHH
Q psy15122        284 GKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDAL  344 (927)
Q Consensus       284 e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L  344 (927)
                        +-...++..|  ...+..++..+...+..|....++      .+..+...|....+-.+
T Consensus        96 --g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~L~~l  146 (210)
T 4db6_A           96 --GALPALVQLL--SSPNEQILQEALWALSNIASGGNE------QIQAVIDAGALPALVQL  146 (210)
T ss_dssp             --TCHHHHHHHT--TCSCHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHH
T ss_pred             --CCHHHHHHHH--cCCcHHHHHHHHHHHHHHHcCCHH------HHHHHHHcCcHHHHHHH
Confidence              1233555555  344677777777777777544332      12234456666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	927
d2bnxa1	343	a.118.1.23 (A:133-475) Diaphanous protein homolog	4e-88
d1v9da_	332	a.207.1.1 (A:) Diaphanous protein homolog 1, dia1	4e-57
d1ux5a_	411	a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces	3e-49
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.003
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.004

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 343

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  282 bits (724), Expect = 4e-88
 Identities = 140/372 (37%), Positives = 225/372 (60%), Gaps = 35/372 (9%)

Query: 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF 195
            + YIQ L +  L    + SC+ESLR++L N+P+SWV  F  +   +     +  L+   
Sbjct: 4   AMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDI-LKRLHDE- 60

Query: 196 PSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAV 255
                + +   R Q+E +RC++A MNN  G+K M   +E + ++ R++DP  P +M++A 
Sbjct: 61  -KEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 119

Query: 256 KVLAAVCLI--PPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLIN 313
           K+L+A+C++  P D +++V++A+T   E+   ERFQP++ GL   G + AL+  CLQLIN
Sbjct: 120 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLIN 178

Query: 314 AIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQR 373
           A++   ++L+FR+H+R+E+MR+GL+ +L  L +  +ED+ VQL VF E  +ED+++   R
Sbjct: 179 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR 238

Query: 374 FDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSI 433
            D++RME+DD  + F+ + N V DS  EP+ LSI                          
Sbjct: 239 LDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSI-------------------------- 272

Query: 434 LQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKS 493
           LQHLL +R+D   R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D++ LV+ + +K+
Sbjct: 273 LQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVDQMIDKT 331

Query: 494 KTEEDR-RVEDL 504
           K E+   +  +L
Sbjct: 332 KVEKSEAKATEL 343

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  197 bits (503), Expect = 4e-57
 Identities = 106/232 (45%), Positives = 150/232 (64%), Gaps = 2/232 (0%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
            E   +    I++   ACEE+++S+  + +LEL LL+GNYMN+GSRN GAFGF I+FL K
Sbjct: 102 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK 161

Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
           L  TK  + K TLLH+L +  E   PE LKF DEL HV++A+RVS + +Q S+ QM+  I
Sbjct: 162 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQI 221

Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
            ++E D+QN   A   +E DKF+E M  F K+ +++   L  M  NM TLY +L +++ F
Sbjct: 222 ADVERDVQNFPAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVF 279

Query: 771 DKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEK 822
           D    ++EEFF D+  F++ F QA +EN K RE EEK  R + A+EKAE E+
Sbjct: 280 DPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  177 bits (451), Expect = 3e-49
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
              Y +    +    +A   +++S  L  +  +IL +GN+MN  S+   A GF+++ L +
Sbjct: 190 EREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQR 247

Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
           L+  KD  N  T L+Y+   +   +P    F  EL  V    +VS + + N  +    +I
Sbjct: 248 LTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSI 307

Query: 711 KNLETDIQNCKQAPV--ANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFY 768
            N+E  ++    +     +  DK L    P   E R+K  LL +  K  +  +  L   Y
Sbjct: 308 VNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTY 367

Query: 769 TFD-KNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIR 810
             D  + +    FF     F + + +A  +N+   E E   I+
Sbjct: 368 GEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEERLYIK 410

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	927
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	100.0
d1v9da_	332	Diaphanous protein homolog 1, dia1 {Mouse (Mus mus	100.0
d1ux5a_	411	Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	97.38
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.37
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	86.97
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	83.03
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	82.28
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	80.42

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-59  Score=523.97  Aligned_cols=328  Identities=42%  Similarity=0.774  Sum_probs=297.6

Q ss_pred             CChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHH
Q psy15122        134 DKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECV  213 (927)
Q Consensus       134 ~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~v  213 (927)
                      .+|.|||++|+++ ...+++++||++|||+|||+|++||++|..+|+.+|+++ |..+...  +.......+...||+||
T Consensus         2 ~s~~~yv~~l~~~-~~~~~~~~~L~sL~v~Lrt~~~sWv~~F~~~G~~~L~~~-L~~l~~~--~~~~~~~~d~~~e~e~l   77 (343)
T d2bnxa1           2 RSAMMYIQELRSG-LRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDI-LKRLHDE--KEETSGNYDSRNQHEII   77 (343)
T ss_dssp             CCHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHTC--CTTTCCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc-CCccHHHHHHHHHHHHHhcCCchHHHHHHhccHHHHHHH-HHHHHhh--cccccccccHHHHHHHH
Confidence            4899999999886 567788999999999999999999999988999999985 4333221  11112345677899999


Q ss_pred             HHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCC--CchHHHHHHHHhhcccccCcChHHH
Q psy15122        214 RCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPP--DGHDKVIKAITMSGELKGKERFQPV  291 (927)
Q Consensus       214 kCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~--~Gh~~VL~Al~~~~~~~e~~RF~~l  291 (927)
                      +|||||||++.|++.|+.++.+|+.|+.|+.+++++++++|+|+|+++|+++.  +||.+||+||+++++.++..||++|
T Consensus        78 ~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~l  157 (343)
T d2bnxa1          78 RCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPL  157 (343)
T ss_dssp             HHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999974  5999999999999988999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhhhHhHHHHHH
Q psy15122        292 VQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI  371 (927)
Q Consensus       292 v~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~~~~D~~el~  371 (927)
                      |+.| ....+.+|+++||.|||+||++++|+++|+|||+||.++||.+++++|+..+++.|.+||++|++.+++|++++.
T Consensus       158 v~~l-~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~~f~~~~~~D~~el~  236 (343)
T d2bnxa1         158 LDGL-KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLK  236 (343)
T ss_dssp             HHHT-STTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-hccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHHHHHHHHHHHHhHHHHHH
Confidence            9999 567789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchhcccccCCHHHHHHHHHHHhhcCCCchhhHHHHHhhhhccccchhhhhhhhhhhHHHHHHHhhhccchhhHHHHHH
Q psy15122        372 QRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYY  451 (927)
Q Consensus       372 ~r~~~~~~d~~~~~~~f~~l~~~v~~t~a~~~f~sil~~ll~~~~~~~~~~~~~~~p~~lSilQhllli~~d~~~~~~~~  451 (927)
                      ++++++.+|++|+.++|+.|++++++|++++||                          +||+|||+++++|...+.+||
T Consensus       237 ~~~~~~~~d~~~~~~~~~~l~~~~~~t~~e~~f--------------------------lSilQhLll~~~~~~~~~~~~  290 (343)
T d2bnxa1         237 GRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHF--------------------------LSILQHLLLVRNDYEARPQYY  290 (343)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHTTSTHHHHH--------------------------HHHHHHHTTSCCCTTTHHHHH
T ss_pred             hcccccccccCCHHHHHHHHHHHhcCCccHHHH--------------------------HHHHHHHHcCCcCcchHHHHH
Confidence            999999999999999999999999999999999                          999999999999988899999


Q ss_pred             HHHHHHHHHHHhccCCCCCCccccccccccchHHHHHHHHhh
Q psy15122        452 KLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKS  493 (927)
Q Consensus       452 ~Lid~~v~qivl~r~g~d~d~~~~~~~~~dv~~ll~~l~~~~  493 (927)
                      +|||+||+||+++++|.||||.. ++|+++|+++++.+.+..
T Consensus       291 ~Lid~~v~~i~l~~~~~d~d~~~-~~l~~~i~~l~d~l~~~~  331 (343)
T d2bnxa1         291 KLIEECVSQIVLHKNGTDPDFKC-RHLQIDIERLVDQMIDKT  331 (343)
T ss_dssp             HHHHHHHHHHHTCGGGCCCCTTC-SCCCCCCTTTC-----CT
T ss_pred             HHHHHHHHHHHHhhcCCCCCchh-hhhhhhHHHHHHHHhhHH
Confidence            99999999999999999999964 489999999999888764

>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-44  Score=394.15  Aligned_cols=228  Identities=46%  Similarity=0.758  Sum_probs=192.4

Q ss_pred             CccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHH
Q psy15122        591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDT  670 (927)
Q Consensus       591 pe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~  670 (927)
                      ++.++++.+.+..+..||++|++|++|+.+|++||++|||||+|+++|+|+||+|+||.||.|||++|+++||||||+++
T Consensus       102 ~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL~~GN~mN~g~~~g~A~GFkL~sL~kL~d~Ks~d~~~tLL~~iv~~  181 (332)
T d1v9da_         102 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL  181 (332)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCHHHHHHSBCSSTTSBHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcchhccccccccccccCHHHHHhHhhccCCCCCccHHHHHHHH
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHH
Q psy15122        671 IEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLL  750 (927)
Q Consensus       671 v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L  750 (927)
                      +++++|+++.|.+||++|..|+++++++|..++++|.+++..++++++.....  .+++|+|..+|.+|+..|..++..+
T Consensus       182 ~~~~~p~l~~~~~eL~~v~~ask~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~--~~~~d~f~~~~~~Fl~~a~~~l~~l  259 (332)
T d1v9da_         182 CENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAA--TDEKDKFVEKMTSFVKDAQEQYNKL  259 (332)
T ss_dssp             HHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCC--SSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCchhccchhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999876544  5678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        751 SNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAEN  820 (927)
Q Consensus       751 ~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~rr~~~akekaer  820 (927)
                      ...+..+.+.|.+++.||||||+++++++||++|++|+..|++|++||+++++++++.+|++.+++++++
T Consensus       260 ~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~~a~~e~~~~~~~~~~~~r~~~~~~~~~~  329 (332)
T d1v9da_         260 RMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEK  329 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999888877777666655543

>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-39  Score=363.94  Aligned_cols=214  Identities=25%  Similarity=0.367  Sum_probs=200.1

Q ss_pred             CCccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHH
Q psy15122        590 MPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVD  669 (927)
Q Consensus       590 lpe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~  669 (927)
                      +++.+.++.+.|..+..||++|++|+.|+.+|++||++|||||+|+  |+|+||+|+||.||.||||+|+++||||||++
T Consensus       189 f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~--~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~  266 (411)
T d1ux5a_         189 YEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS--KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEK  266 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG--GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhhhhcCCC--CCcceeehHHHHHhhhccCCCCCeeHHHHHHH
Confidence            4488999999999999999999999999999999999999999985  67999999999999999999999999999999


Q ss_pred             HHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcchhHHHHHhhhHHHHHHHH
Q psy15122        670 TIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQA--PVANENDKFLEIMEPFAKEVRQKI  747 (927)
Q Consensus       670 ~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~--~~~~~~D~f~~~m~~F~~~a~~~~  747 (927)
                      ++++++|+++.|.+||++|..|++++++++..+++.|.+++..++++++.....  ...++.|.|..+|..|+..|..++
T Consensus       267 ~~~~~~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~  346 (411)
T d1ux5a_         267 IVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKG  346 (411)
T ss_dssp             HHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcHhhccHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999865433  124567899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCC-CcccchhccHHHHHHHHHHHHHHHHHHHHHH
Q psy15122        748 TLLSNMSKNMMTLYGDLAEFYTFDKNI-YTLEEFFTDIKTFKDSFYQAWQENIKLREAE  805 (927)
Q Consensus       748 ~~L~~~~~~~~~~~~~l~~yfgEd~~~-~~~eefF~~~~~F~~~f~~a~~en~~~~e~e  805 (927)
                      ..++..+..+.+.|.+++.|||||+++ ++|++||++|.+|+..|++|++||.+++++|
T Consensus       347 ~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~~~e~e  405 (411)
T d1ux5a_         347 DLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEE  405 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999974 6899999999999999999999998776544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00027  Score=75.96  Aligned_cols=219  Identities=16%  Similarity=0.200  Sum_probs=133.0

Q ss_pred             ccchhhhccCCCHHHHHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccccccccccCCCChHHHHHHhc---
Q psy15122         68 NKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLS---  144 (927)
Q Consensus        68 ~~~~~~~~~~~~~~ei~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~---  144 (927)
                      .+|..|+.+..+. -.+.+..++|+++.++      |++.|.                +|+..|...|...++..|.   
T Consensus         2 ~s~~~yv~~l~~~-~~~~~~~~~L~sL~v~------Lrt~~~----------------sWv~~F~~~G~~~L~~~L~~l~   58 (343)
T d2bnxa1           2 RSAMMYIQELRSG-LRDMHLLSCLESLRVS------LNNNPV----------------SWVQTFGAEGLASLLDILKRLH   58 (343)
T ss_dssp             CCHHHHHHHHTSC-CCHHHHHHHHHHHHHH------HHHSCH----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc-CCccHHHHHHHHHHHH------HhcCCc----------------hHHHHHHhccHHHHHHHHHHHH
Confidence            4677777775422 2223456889999888      999999                6776665555555555542   


Q ss_pred             -CC-----ccchhhhhhhHHHHHHHhccCCchhHHHHhh---hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHH
Q psy15122        145 -QP-----ELSVNKMYSCIESLRIALTNHPLSWVNEFVL---QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRC  215 (927)
Q Consensus       145 -~~-----~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~---~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkC  215 (927)
                       .+     ......+++|++|||..|++   .++.+.+.   .++..|..        ++      ..........++..
T Consensus        59 ~~~~~~~~~~d~~~e~e~l~CLkalmn~---~~G~~~vl~~~~~i~~l~~--------~L------~s~~~~tr~~a~el  121 (343)
T d2bnxa1          59 DEKEETSGNYDSRNQHEIIRCLKAFMNN---KFGIKTMLETEEGILLLVR--------AM------DPAVPNMMIDAAKL  121 (343)
T ss_dssp             TCCTTTCCTTHHHHHHHHHHHHHHHTSS---HHHHHHHHHSSSHHHHHHH--------TC------CTTSHHHHHHHHHH
T ss_pred             hhcccccccccHHHHHHHHHHHHHHhcc---HHHHHHHHcChHHHHHHHH--------cc------CCCchHHHHHHHHH
Confidence             11     11234778999999999999   77777763   34544432        23      11223344557888


Q ss_pred             HHHHHhc---HhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHH-----hhhhcccCCCchHHHHHHHHhhcccccCcC
Q psy15122        216 IRAIMNN---TVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV-----LAAVCLIPPDGHDKVIKAITMSGELKGKER  287 (927)
Q Consensus       216 LkaimN~---~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlel-----Laalc~~~~~Gh~~VL~Al~~~~~~~e~~R  287 (927)
                      |.++|..   ..|+..|++   +++.....-...++...+..++-     +.+.|+.       ++++|.+...-     
T Consensus       122 L~~lc~~~~~~~g~~~vL~---Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~-------lIN~li~~~~d-----  186 (343)
T d2bnxa1         122 LSALCILPQPEDMNERVLE---AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ-------LINALITPAEE-----  186 (343)
T ss_dssp             HHHHHTCCSSTTHHHHHHH---HHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHH-------HHHHHHTTCSC-----
T ss_pred             HHHHHhccCCCchHHHHHH---HHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHH-------HHHHHHcCccc-----
Confidence            8888865   358999874   55555554455566555443311     1122222       55555443210     


Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHHHH-cCchhHHHHHHHHHHHHHhChHHHHHHHhh
Q psy15122        288 FQPVVQGLMVKGNNEALRTACLQLINAIV-ATPDDLEFRLHLRNEIMRVGLYDLLDALEK  346 (927)
Q Consensus       288 F~~lv~~L~~~~~~~~~~~~~m~lIN~Lv-~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~  346 (927)
                      +     .+|.+.++...+.+....|..|- ...++++.++.++.+....+..++.+++..
T Consensus       187 l-----~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~~f~~~~~~D~~el~~~~~~  241 (343)
T d2bnxa1         187 L-----DFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDD  241 (343)
T ss_dssp             H-----HHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHHHCChHHHHHHHHccCChHHHHHHHHHHHHHHhHHHHHHhcccc
Confidence            0     11122334445566677777774 356889999999999999888888877654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.37  E-value=0.39  Score=50.44  Aligned_cols=138  Identities=16%  Similarity=0.133  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccC
Q psy15122        206 DRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGK  285 (927)
Q Consensus       206 ~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~  285 (927)
                      ..++..++.+|..++.+.......+...+.+..+...+....+.++..++..|..++...  ..+ .+..+...      
T Consensus       286 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~--~~~-~~~~l~~~------  356 (434)
T d1q1sc_         286 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG--TVE-QIVYLVHC------  356 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS--CHH-HHHHHHHT------
T ss_pred             hhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcC--CHH-HHHHHHHC------
Confidence            456788999999998765554444444467888888888888899888888887777653  122 23333332      


Q ss_pred             cChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHH
Q psy15122        286 ERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSV  354 (927)
Q Consensus       286 ~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~  354 (927)
                      +=+.+++..|  ...+.+++..++..|..|+...+....--.++..|.+.|+.+.++.|...+++++..
T Consensus       357 ~~i~~L~~ll--~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~  423 (434)
T d1q1sc_         357 GIIEPLMNLL--SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK  423 (434)
T ss_dssp             TCHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHH
T ss_pred             CcHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHH
Confidence            2355677666  455677777777666666543332222234667788999999999998877776553

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.97  E-value=18  Score=37.99  Aligned_cols=117  Identities=13%  Similarity=0.154  Sum_probs=77.4

Q ss_pred             CChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhh-hhhhhhcchhhhcCcCCCCCCCcchhhHHHHHH
Q psy15122        134 DKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQD-NKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYEC  212 (927)
Q Consensus       134 ~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~G-l~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~  212 (927)
                      ..-..++..+.++..  ...+..+..+|-.|....-.-+..++..| +..|+.+    + .        ......++.++
T Consensus        76 ~~l~~~~~~~~s~~~--~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~----l-~--------~~~~~~iq~~a  140 (503)
T d1wa5b_          76 QELPQMTQQLNSDDM--QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF----M-R--------ENQPEMLQLEA  140 (503)
T ss_dssp             CCHHHHHHHHSCSSH--HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT----T-S--------TTSCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHH----H-c--------CCCCHHHHHHH
Confidence            345667777765543  33456777788767443322344555444 6666553    2 1        22235678999


Q ss_pred             HHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccC
Q psy15122        213 VRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIP  265 (927)
Q Consensus       213 vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~  265 (927)
                      +.||..|+.........+...+++..+...+.+....++..++..|+.+|..+
T Consensus       141 ~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~  193 (503)
T d1wa5b_         141 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS  193 (503)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh
Confidence            99999998765555555556677888888888888888888888888887654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.03  E-value=21  Score=34.19  Aligned_cols=166  Identities=13%  Similarity=0.175  Sum_probs=99.3

Q ss_pred             hHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHhhHHHHhcchh
Q psy15122        156 CIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKE  234 (927)
Q Consensus       156 ~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl~~~~  234 (927)
                      .+..|....  .+.+|-..|+. +|+..++..    ++         ...+..++..++.+|..++-+.......+...+
T Consensus        37 Al~~L~~L~--~~~d~a~~l~~~gg~~~ll~~----ll---------~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          37 ALELLADLC--ENMDNAADFCQLSGMHLLVGR----YL---------EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHH--TSHHHHHHHHHTTHHHHHHHT----TT---------TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHH--cCHHHHHHHHHcCCHHHHHHH----Hh---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            455555544  34688888984 777776552    12         122356788899999999954333443333446


Q ss_pred             HHHHHHHhcC-CCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHHHHH
Q psy15122        235 ALTIVARSLD-PNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLIN  313 (927)
Q Consensus       235 ~i~~la~sl~-~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN  313 (927)
                      +|..|...+. ...+.++..++-.|+.+|...+.+...++.+          +=+..++..|  ...+..++..++..|.
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~----------~gi~~L~~lL--~~~~~~~~~~a~~~L~  169 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL----------DGFSVLMRAM--QQQVQKLKVKSAFLLQ  169 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT----------THHHHHHHHH--HSSCHHHHHHHHHHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHh----------hhhhHHHHHH--hcCchHHHHHHHHHHH
Confidence            7888887774 4566777778888888876653333333221          1134667666  3457777777777776


Q ss_pred             HHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHH
Q psy15122        314 AIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSV  354 (927)
Q Consensus       314 ~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~  354 (927)
                      .|....++.      +..+...|....+-.|-...++.+..
T Consensus       170 ~l~~~~~~~------~~~~~~~~~v~~L~~lL~~~~~~~~~  204 (264)
T d1xqra1         170 NLLVGHPEH------KGTLCSMGMVQQLVALVRTEHSPFHE  204 (264)
T ss_dssp             HHHHHCGGG------HHHHHHTTHHHHHHHHHTSCCSTHHH
T ss_pred             HHHhccHHH------HHHHHHhhhHHHHHHHHcCCCHHHHH
Confidence            665444332      34455677766665554444444433

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.28  E-value=9.1  Score=40.48  Aligned_cols=137  Identities=10%  Similarity=0.119  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHhc-HhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhccccc
Q psy15122        206 DRVQYECVRCIRAIMNN-TVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKG  284 (927)
Q Consensus       206 ~~~~~e~vkCLkaimN~-~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e  284 (927)
                      ..+..+++.||..|+-+ ......++ ....+..+...+.+..+.++..+...|+.++... ..+...+.-|...     
T Consensus       344 ~~i~~~~~~~l~nl~~~~~~~~~~i~-~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~l~~~-----  416 (503)
T d1wa5b_         344 ENIKKEACWTISNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGG-LQRPDIIRYLVSQ-----  416 (503)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-TTCTHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHH-HccccchhHHhcccCChhHHHHHHHHHHHHHhcc-cccHHHHHHHHHC-----
Confidence            45677888999888654 33445554 4467888888888888889888887777776643 1222233333332     


Q ss_pred             CcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHH-----HHHHHHHHHhChHHHHHHHhhcCChhH
Q psy15122        285 KERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFR-----LHLRNEIMRVGLYDLLDALEKDASEDV  352 (927)
Q Consensus       285 ~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~R-----i~lR~Ef~~~GL~eil~~L~~~~~~~L  352 (927)
                       +=+.+++..|  ...+.++...++..|..|+...+.....     -.....|.++|..+.|+.|....++++
T Consensus       417 -~~l~~l~~~L--~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i  486 (503)
T d1wa5b_         417 -GCIKPLCDLL--EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKI  486 (503)
T ss_dssp             -TCHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHH
T ss_pred             -CcHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence             2345666666  3446667777777666665433322211     123445778888888888877776654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.42  E-value=4.3  Score=41.86  Aligned_cols=120  Identities=12%  Similarity=0.104  Sum_probs=78.4

Q ss_pred             cCCCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhh-hhhhhhhcchhhhcCcCCCCCCCcchhhHHH
Q psy15122        131 SKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQ-DNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQ  209 (927)
Q Consensus       131 ~~~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~-Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~  209 (927)
                      ....+-+.+|..|.+++..  .....+..|+..+....-.=+..++.. ++..|+.+    | .        ...+..++
T Consensus        10 ~~~~~i~~lv~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~l----L-~--------~~~~~~v~   74 (434)
T d1q1sc_          10 TVNWSVEDIVKGINSNNLE--SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF----L-G--------KTDCSPIQ   74 (434)
T ss_dssp             SSSCCHHHHHHHHTSSCHH--HHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHH----T-T--------CGGGHHHH
T ss_pred             hhhhhHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHH----H-c--------cCCCHHHH
Confidence            3355788899999887543  334456666655532211113455544 46666553    2 1        22345688


Q ss_pred             HHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccC
Q psy15122        210 YECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIP  265 (927)
Q Consensus       210 ~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~  265 (927)
                      .++..||..++.........+-..+++..+...+.+....++..++..|+-+|.-+
T Consensus        75 ~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~  130 (434)
T d1q1sc_          75 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG  130 (434)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccc
Confidence            99999999997654333333445678999999999988889888999998888754