Psyllid ID: psy15132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780------
Protein Sequence
MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNK
Secondary Structure (PSIPRED)
cEEEcccccccccccccEEEEccccEEEEccccccccccccEEEcccccccccccccccccEEEEEEEccccEEEEEEcccEEEEEEEEEEEEccccEEEEEEcccHHcccccccccEEEEEEEEEEEccccEEEEEcccEEEEEccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEEEEEEEEEcccEEEEccccccccccEEEccccEEEEccccccccccEEEEEEEEEEEEcccEEEEEEEHHHHHHHHccccHHHccccccHHHHHHHHccEEEEEEEcccccccccccccccccccHHHHHHHHcccccccccccccEEEEEEEEEEEEcccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEEEcccccEEEEEEcccHHccccccccccEEEEccEEEEccccccccccccEEEEEEcccEEEEcccccccccccEEEEEEEcccccccccccEEEEEEEEEEEcccEEEEEEccccEEEEEEEEEEcccccEEEEEEccccccccccccccEEEEEcEEEEccccccccEEEccccccccccccccEEEEEEEEEEEcccccccccccccccccEEEccccEEEEccccccccccEEEEEEEEEEEEccccEEEEEEHHHHHHHHcccHHHHHHccccHHHHHHHcccEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHcccccccccEEEEEccccEEEEcccccccccccccccEccHHHHHHcccccEEEEEEEEEEEcccEEEEccccccEEEEEEEEEEcccccEEEEEEEHHHHHHcccccccEEEEEEEEEEcccccEEEcccccEEEEEccccHHHHHHHHHHHHHcccccEEEcccccccccccccccEEHHHHHHccccccccccEEEEEEEEEEEEccccccccccccccccEEEEcccccEEEcccccccccccEEEEEEEEEccccccEEEEccHHHHHHHHcccHHHHHHHHHccHHHHHccccEEEEEEEEEEccccccHHHHcccccccHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHccccccccEEEEEEEEEcccEEEEEccEEEEEEEEEEEccccEEEEEEEHHHHHHHHHHcccccEEEEEccEEEEccHHHccccccEEEEcccccEEEEcccccccccccccccEccHHHHHHcccccEEEEEEEEEEEcccEEEEccccccEEEEEEEEEEcccccEEEEEEEHHHHHHcccccccEEEEEEEEEEcccccEEEHHcccHccccccccccEEEEEEEEEEEcccccccccccccccccEEEEcccccEEEcccccccccccEEEEEEEEEccccccEEEEccHHHHHHHHcccHHHHHHHHHccHHHHHHcccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mlaapankkfssinndyemsfthsttvipcnedevgnmpsvkycfvplktiaeispdenidVLGVCIDaaelssvtgktnqktymkrditlvdqSQASVTMTLWgkeaetfdasnkpvIAVKAARVsefqggktlSLSMSSvlslnpdipechklqgwfstqtntrfepvsqrtggmgggaaGNLLLMREIQDqqlgmgdkadycsVRGIIQVfrgsnttykacpsqdcnkkvidqnngmyrceKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTaqevgestedhpALKKALFTQYIFRLRAKLEhyngtkkipdgvniNSFAMLATQLNdiitdgtlseFTIVQIKRYIVSgvssgsatnrSVLIILELniikpgteigfkignpqplntntdnsstqqtpaatntngsngvhnnvaiprqasapvvqthpivslspyqnkwTIKArvtnktpirewnnargsgklfSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIsnctlkpankkfssinndyemsfthsttvipcnedevgnmpsvkycfvplktiaeispdenidVLGVCIDaaelssvtgktnqktymkrditlvdqSQASVTMTLWgkeaetfdasnkpvIAVKAARVSEFQGNLLLMREIQDqqlgmgdkadycsVRGIIQVfrgsnttykacpsqdcnkkvidqnngmyrceKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTaqevgestedhpALKKALFTQYIFRLRAKLEHYNK
Flexible Loop (DISEMBL)
mlaapankkfssinndyeMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAaelssvtgktnqktymkrditlvdqSQASVTMTLWGKEaetfdasnkpVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGsnttykacpsqdcnkkviDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIvsgvssgsatnRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQThpivslspyqnkwTIKARvtnktpirewnnargsgklfSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAaelssvtgktnqktymkrditlvdqSQASVTMTLWGKEaetfdasnkpVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGsnttykacpsqdcnkkviDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNK
Low Complexity Region (SEG)
MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTlslsmssvlslNPDIPECHKLQGWFSTQTNTRFEPVSQRTggmgggaagnlllmREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLntntdnsstqqtPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNK
Disordered region (IsUnstruct)
******************MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF***********GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG*****HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI******************************************PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV*******PALKKALFTQYIFRLRAKL*****
Disordered Region (DISOPRED)
MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR***************AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDII**GTLSEFTIVQIKRYIVS******ATNRSVLIILELNIIKPGTEI******************************************************VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYN*
Disordered Region (DISEMBL)
********KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ********HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNT*************TNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ********HPALKKALFTQYIFRLRAKLEHYNK
Disordered Region (DISPRO)
*LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF*PVS***********GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNP****************************************VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEH***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	786	2.2.26 [Sep-21-2011]
Q24492	603	Replication protein A 70	yes	N/A	0.578	0.754	0.412	1e-113
P27694	616	Replication protein A 70	yes	N/A	0.578	0.738	0.386	1e-104
Q8VEE4	623	Replication protein A 70	yes	N/A	0.578	0.730	0.376	1e-103
Q5ZJJ2	614	Replication protein A 70	yes	N/A	0.578	0.741	0.393	1e-103
Q5R7Q4	616	Replication protein A 70	yes	N/A	0.578	0.738	0.381	1e-101
Q6NY74	601	Replication protein A 70	yes	N/A	0.590	0.772	0.373	2e-98
Q92372	609	Replication factor A prot	yes	N/A	0.555	0.717	0.349	7e-84
Q5FW17	609	Replication protein A 70	yes	N/A	0.573	0.740	0.349	9e-78
Q01588	609	Replication protein A 70	N/A	N/A	0.404	0.522	0.405	4e-71
P22336	621	Replication factor A prot	yes	N/A	0.469	0.594	0.324	2e-60

>sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/524 (41%), Positives = 300/524 (57%), Gaps = 69/524 (13%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG   NS+AMLA+QLN +  +G L EFTIVQ+ +Y+ S V    A  R VLII EL +
Sbjct: 46  ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ-TPAATNTNGSNGVHNN-------VAIPRQAS 436
           + PG E+  KIG P       +N++ Q   P    T+ S  +            I   +S
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKPAVTSNSKPIAKKEPSHNNNNNIVMNSS 160

Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
                THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220

Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
            ++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+  T V  C + +   +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280

Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
            +KY  VP+  ++ +     +D +G+C +  EL S   +T  K + KRDITLVD S +++
Sbjct: 281 EIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAI 340

Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
           ++TLWG +A  FD   +PVI VK  R++EF                              
Sbjct: 341 SLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400

Query: 648 --------GNLLLMR--------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
                    N++  R              + + + LG GDK DY   + ++ + +  N  
Sbjct: 401 DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAF 460

Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
           Y+ACP  DCNKKV+D+ N  +RCEKCN  F  F YRL++ + IGDWT++ WV+ F    E
Sbjct: 461 YRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520

Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
            +LG T+QEVGE+ E+ PA  + +     FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564

Participates in a very early step in DNA replication. RP-A is a single-stranded DNA-binding protein.
Drosophila melanogaster (taxid: 7227)

>sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/543 (38%), Positives = 303/543 (55%), Gaps = 88/543 (16%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG+N  S  MLATQLN ++ +  LS   + QI R+IV+ +  G    R V+I++EL +
Sbjct: 46  MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 101

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
           +K    +G KIGNP P N             A +          NGS+G+ + V+     
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGA 161

Query: 434 -----QASAPVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
                +A+ P +         +  PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221

Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
           FS++L+DESGEIRAT FN++ ++F  +IE +KVYY S  TLK ANK+F+++ NDYEM+F 
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281

Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
           + T+V+PC +D   ++P+V++ F  +  +   S D  +D++G+C    + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339

Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
              KR+I L+D S   VT TLWG++A+ FD S +PV+A+K ARVS+F G  L        
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399

Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
                                                        + E++ + LG GDK 
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 459

Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
           DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF  F YR+IL V 
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519

Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
           I D+  + WVT FQ  AE+ILG  A  +GE  + +        + A F  +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579

Query: 783 HYN 785
            YN
Sbjct: 580 TYN 582

Functions as component of the alternative replication protein A complex (aRPA). aRPA binds single-stranded DNA and probably plays a role in DNA repair; it does not support chromosomal DNA replication and cell cycle progression through S-phase. In vitro, aRPA cannot promote efficient priming by DNA polymerase alpha but supports DNA polymerase delta synthesis in the presence of PCNA and replication factor C (RFC), the dual incision/excision reaction of nucleotide excision repair and RAD51-dependent strand exchange.

Homo sapiens (taxid: 9606)

>sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 300/552 (54%), Gaps = 97/552 (17%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG+N  S  MLATQLN ++  G L+   + Q+ ++IV+ +  G    R V+++++L +
Sbjct: 46  MSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFIVNTLKDG----RKVVVLMDLEV 101

Query: 385 IKPGTEIGFKIGNPQPLNTN---------------TDNSSTQQTPAATN---TNGSNGVH 426
           +K   ++G KIGNP P N                   + ++  TP A+     NGS G+ 
Sbjct: 102 MKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQAVPSPASAATPPASKPQPQNGSLGMG 161

Query: 427 NNVAIPRQASAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
           +  A    AS P                  +  PI SL+PYQ+KWTI ARVTNK+ IR W
Sbjct: 162 STAAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTW 221

Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
           +N+RG GKLFS++L+DESGEIRAT FN++ ++F  +IE +KVYY S   LK ANK+FS++
Sbjct: 222 SNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAV 281

Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 590
            NDYEM+F + T+V+PC +    ++P+V++ F  +  +   + D  +D++G+C    +  
Sbjct: 282 KNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGICKSYEDSI 339

Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-- 648
            +T K+N +   KR+I L+D S   VT TLWG++A+ FD S +PV+A+K ARVS+F G  
Sbjct: 340 KITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGARVSDFGGRS 399

Query: 649 --------------------------------------------------NLLLMREIQD 658
                                                             N   + E + 
Sbjct: 400 LSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKS 459

Query: 659 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 718
           + LG GDKADY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF  F
Sbjct: 460 ENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNF 519

Query: 719 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQY 773
            YR+IL   I D+  + WVT FQ  AE+ILG     +GE  E +        + A F  +
Sbjct: 520 KYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFEEVFQNANFRSF 579

Query: 774 IFRLRAKLEHYN 785
            FR+R KLE YN
Sbjct: 580 TFRIRVKLETYN 591

Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing.

Mus musculus (taxid: 10090)

>sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/541 (39%), Positives = 299/541 (55%), Gaps = 86/541 (15%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DGVN  S  MLATQLN ++ +  LS   I Q+ R+IV+ +  G    R V+I+++L++
Sbjct: 45  MSDGVNTLSSFMLATQLNPLVEEERLSAHCICQVNRFIVNSLKDG----RRVVILMDLDV 100

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-----PR------ 433
           +K    +G  +GNP P N       +    A    N       N+++     P+      
Sbjct: 101 LKTADMVGGTVGNPVPYNEGQGQQRSSAPTANAAPNKPQQQDGNLSVAGSAAPKYHAPSN 160

Query: 434 ---QASAPV-VQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
              +ASAP  V+T         PI SL+PYQ+KWTI ARVT K  IR W+N+RG GKLFS
Sbjct: 161 QFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFS 220

Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
           I+L+DESGEIRAT FND+ ++F  +IE +KVYY +   LK ANK+++++ NDYE++F + 
Sbjct: 221 IELVDESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFNNE 280

Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
           T+V+PC  D+  ++PSV++ FV +  +     D  +DV+G+C    +++ +  K + +  
Sbjct: 281 TSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIVVKASNREV 338

Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------- 648
            KR++ L+D S   VT TLWG EAE FD S +PVIA+K ARVS+F G             
Sbjct: 339 SKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVV 398

Query: 649 ---------------------------------------NLLLMREIQDQQLGMGDKADY 669
                                                  N   + E + ++LG GDKADY
Sbjct: 399 NPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTNWKTLYEAKSERLGQGDKADY 458

Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
            S  G I   R  N  Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF  F YR++L V I 
Sbjct: 459 FSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIA 518

Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
           D  +  WVT FQ  AE ILG +A  +GE  + +        + A F  Y F++R KLE Y
Sbjct: 519 DSLDYQWVTCFQESAEFILGQSATFLGELKDKNEQAFEEVFQNANFNTYEFKIRVKLETY 578

Query: 785 N 785
           N
Sbjct: 579 N 579

Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing.

Gallus gallus (taxid: 9031)

>sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/543 (38%), Positives = 299/543 (55%), Gaps = 88/543 (16%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG+N  S  M ATQLN ++    LS   + QI R+IV+ +  G    R V+I++EL +
Sbjct: 46  MSDGLNTLSSFMSATQLNPLVEQEQLSSNCVCQINRFIVNTLKDG----RRVVILMELEV 101

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
           +K    +G KIGNP P N             A +          NG++G  + V+     
Sbjct: 102 LKSAEVVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGTSGAGSTVSKAYGA 161

Query: 434 -----QASAPVVQTH---------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
                +A+ P +  +         PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG  KL
Sbjct: 162 SKTFGKAAGPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKL 221

Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
           FS++L+DESGEIRAT FN++ ++F  +IE +KVYY S  TLK ANK+F+++ NDYEM+F 
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281

Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
           + T+V+PC +D   ++P+V++ F  +  +   S D  +D++G+C    + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339

Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
              KR+I L+D S   VT TLWG++A+ FD S +PV+A+K ARVS+F G  L        
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399

Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
                                                        + E++ + LG GDK 
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 459

Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
           DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF  F YR+IL V 
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519

Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
           I D+  + WVT FQ  AE+ILG  A  +GE  + +        + A F  +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579

Query: 783 HYN 785
            YN
Sbjct: 580 TYN 582

It participates in a very early step in initiation. RP-A is a single-stranded DNA-binding protein.

Pongo abelii (taxid: 9601)

>sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1

 Score =  360 bits (924), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/544 (37%), Positives = 305/544 (56%), Gaps = 80/544 (14%)

Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
           K++  NG  +    + DG++  S  ML+TQLN +     L+   +  +KR + + +  G 
Sbjct: 31  KIDGGNGVSRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDG- 89

Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQP-LNTNTDNSSTQQTPAATNTNGSNGVHNNV 429
              R V++IL++ ++K   ++  KIG+P P +   +   ST   P A      NG   + 
Sbjct: 90  ---RRVVVILDIEVLKSADQMPGKIGDPTPYVEGQSKAPSTAPAPTARPLQPQNGSDGST 146

Query: 430 AIP-------RQASAPVV-----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
             P       +  +AP       +  PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG G
Sbjct: 147 YRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDG 206

Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
           KLFS++L+DESGEIRAT FN+E ++F  +IE+ KV+YIS  TLK ANK+FSS+ NDYEM+
Sbjct: 207 KLFSMELVDESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMT 266

Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
               T++IPC  ++  ++P ++  FV +  +     D  +DV+GVC +A +++ +  K N
Sbjct: 267 LNGETSIIPC--EDSNDVPMLQCDFVSIADLESREKDTILDVIGVCKNAEDVARIMTK-N 323

Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------ 651
            +   KR+I L+D S   + +T+WG +AETFD S +P++A+K AR+S+F G  L      
Sbjct: 324 SREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQPILAIKGARLSDFGGRSLSTLYSS 383

Query: 652 ---------------------------------------------LMREIQDQQLGMGDK 666
                                                         + E++++ LG GDK
Sbjct: 384 TVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGGNTNWKTLAEVKNEHLGHGDK 443

Query: 667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
           ADY S    I   R  N  Y+ACPS+DCNKKV+DQ NGM+RCEKC+KEF  F YRL+L  
Sbjct: 444 ADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSA 503

Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKL 781
            I D+ ++ WVT FQ+ AE++LG  +  +G+  + + A      + A F  ++FR R KL
Sbjct: 504 NIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDTNEAAFDEVFQHANFNTFVFRNRVKL 563

Query: 782 EHYN 785
           E YN
Sbjct: 564 ETYN 567

Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing.

Danio rerio (taxid: 7955)

>sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1

 Score =  312 bits (799), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 185/530 (34%), Positives = 288/530 (54%), Gaps = 93/530 (17%)

Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF- 393
           +ML+TQLN ++ +  L +   VQ+ ++ V+ +       R +LI+L LN++   TE+G  
Sbjct: 60  SMLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKE-----RKILIVLGLNVL---TELGVM 111

Query: 394 -KIGNPQPLNT---------NTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT- 442
            KIGNP  L T           +N+S  +T  +T+TN   G  NN A    A  P+++  
Sbjct: 112 DKIGNPAGLETVDALRQQQNEQNNASAPRTGISTSTNSFYG--NNAAATAPAPPPMMKKP 169

Query: 443 ----------HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
                     +PI  LSPYQNKWTI+ARVTNK+ ++ W+N RG GKLFS++LLDESGEIR
Sbjct: 170 AAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGEIR 229

Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
           AT FND+ + F+D++++  VYYIS C +  A K+++++ N+YE+ F   T +    ED+ 
Sbjct: 230 ATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-EDQT 288

Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
             +P  K+ FV L+ + +++ D  IDV+GV  +   +  +T +   + + KRDIT+VDQ+
Sbjct: 289 A-VPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQT 347

Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMR---------EIQD----- 658
              + +TLWGK A  F  S + ++A K  +V++FQG  L M          +IQ+     
Sbjct: 348 GYEMRVTLWGKTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLK 407

Query: 659 ---------------------------------------QQLGMGDKADYCSVRGIIQVF 679
                                                  + LGM +  DY S++G I   
Sbjct: 408 GWYDGQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYI 467

Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
           R  N +Y ACP+ DCNKKV DQ  G +RCEKCNKE++   YR I+ + +GD T  +W+ +
Sbjct: 468 RKKNVSYPACPAADCNKKVFDQ-GGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNV 526

Query: 740 FQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHY 784
           F +  + I+  TA E+ +  E+        + +A +  YIF+ RAK +++
Sbjct: 527 FDDVGKLIMHKTADELNDLQENDENAFMNCMAEACYMPYIFQCRAKQDNF 576

Binds to single-stranded sequences.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1

 Score =  292 bits (747), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 188/538 (34%), Positives = 265/538 (49%), Gaps = 87/538 (16%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG+N  S  MLATQLN ++ +  L+   I Q+ R+IV+ +  G    R V+I++E+ +
Sbjct: 46  MSDGLNTLSSFMLATQLNFLVDNNLLATNCICQVSRFIVNNLKDG----RRVIIVMEMEV 101

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQT------------------PAATNTNGSN--G 424
           +K    +  KIGNP P N                             P + N   S   G
Sbjct: 102 LKSADLVKGKIGNPHPYNDGQGPPQPAAPAPASAPPPSKPQNISAPPPPSMNRGASKLFG 161

Query: 425 VHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
             + V  P  + + VV   PI SL+PYQ+KWT++ARVTNK  IR W+N+RG GKLFSI++
Sbjct: 162 GGSVVNTPGGSQSKVV---PIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEM 218

Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
           +DESGEIRAT FN++ ++F  +IE +KVYY S  TLK ANK+++S+ NDYEM+F   T+V
Sbjct: 219 VDESGEIRATAFNEQADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSV 278

Query: 545 ----------------IPCNEDEVGNMPSVKYCFVPLKTIAEIS-----------PDENI 577
                           +P  E E  N  +V       K   E++              NI
Sbjct: 279 IPCDDSADVPMVQFEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNI 338

Query: 578 DVLG-------------------------VCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
           +++                          V I  A LS   G++         +   D  
Sbjct: 339 NLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIP 398

Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSV 672
           +A      +  E +  + ++           +    +LL   E++ + LG G+KADY + 
Sbjct: 399 EAFKLRAWFDSEGQVVEGTSISESRGGTGGGNTNWKSLL---EVKTENLGHGEKADYFTS 455

Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
              I   R  N  Y+ACPSQDCNKKVIDQ NG++RCEKC+KEF  + YRLIL   I D+ 
Sbjct: 456 VATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFG 515

Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
            + W+T FQ  AESILG  A  +GE  E +        + A F  Y FR+R KLE YN
Sbjct: 516 ENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVFQNANFRSYTFRIRVKLETYN 573

Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing.

Xenopus tropicalis (taxid: 8364)

>sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1

 Score =  270 bits (689), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/340 (40%), Positives = 209/340 (61%), Gaps = 22/340 (6%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG+N  S  MLATQLN ++ +  L+   I Q+ R+IV+ +  G    R V+I++EL++
Sbjct: 46  MSDGLNTLSSFMLATQLNSLVDNNLLATNCICQVSRFIVNNLKDG----RRVIIVMELDV 101

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNS----------------STQQTPAATNTNGSNGVHNN 428
           +K    +  KIGNPQP N                           P  +   G++ +   
Sbjct: 102 LKSADLVMGKIGNPQPYNDGQPQPAAPAPASAPAPAPSKLQNNSAPPPSMNRGTSKLFGG 161

Query: 429 VAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES 488
            ++         +  PI SL+PYQ+KWT++ARVTNK  IR W+N+RG GKLFSI+++DES
Sbjct: 162 GSLLNTPGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDES 221

Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
           GEIRAT FN++ ++F  +IE +KVYY S  TLK ANK+++S+ NDYEM+F   T+VIPC 
Sbjct: 222 GEIRATAFNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC- 280

Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
            D+  ++P V++ FV +  +   + D  +D++GVC +  E++ VT K+N +   KR I L
Sbjct: 281 -DDSADVPMVQFEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHL 339

Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
           +D S   V+ TLWG++A+ FD S +PV+A+K AR+S+F G
Sbjct: 340 MDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGG 379

Plays an essential role in several cellular processes in DNA metabolism including replication, recombination and DNA repair. Binds and subsequently stabilizes single-stranded DNA intermediates and thus prevents complementary DNA from reannealing.

Xenopus laevis (taxid: 8355)

>sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 232/456 (50%), Gaps = 87/456 (19%)

Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
           G P  L++N++ ++ ++  A  N N             Q + P+     I  LSPYQN W
Sbjct: 153 GVPDMLHSNSNLNANERKFANENPNS------------QKTRPIF---AIEQLSPYQNVW 197

Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
           TIKARV+ K  I+ W+N RG GKLF+++ LD SGEIRAT FND   +F++++++ KVYY+
Sbjct: 198 TIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYV 257

Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
           S   L+PA  +F+++ + YE++    T +  C ++   N+P   + F+ L  I     + 
Sbjct: 258 SKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNS 315

Query: 576 NIDVLGV--CIDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
           N+DVLG+   I+   EL+S  G    K + +RDIT+VD S  S+++ LW ++A  F+   
Sbjct: 316 NVDVLGIIQTINPHFELTSRAG----KKFDRRDITIVDDSGFSISVGLWNQQALDFNLPE 371

Query: 633 KPVIAVKAARVSEFQGNLLLMR---------EIQD---------------------QQLG 662
             V A+K  RV++F G  L M          EI +                     Q+ G
Sbjct: 372 GSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG 431

Query: 663 MG----------------------------DKADYCSVRGIIQVFRGSNTTYKACPSQDC 694
           MG                            +K D+ SV+  I   +  N  Y AC +++C
Sbjct: 432 MGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENC 491

Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
           NKKV++Q +G +RCEKC+       +R IL + I D TN +W+TLF ++A+ +LGV A  
Sbjct: 492 NKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANT 551

Query: 755 VGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
           +    E+ P       +     +Y FR+RA+ + YN
Sbjct: 552 LMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587

Binds to single-stranded sequences participating in DNA replication in addition to those mediating transcriptional repression (URS1) and activation (CAR1). Stimulates the activity of a cognate strand exchange protein (SEP1). It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the simian virus 40 origin of DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	786
347965864	612	AGAP001421-PA [Anopheles gambiae str. PE	0.586	0.753	0.433	1e-125
157133641	619	replication factor a 1, rfa1 [Aedes aegy	0.581	0.738	0.428	1e-123
170032512	615	replication protein A 70 kDa DNA-binding	0.583	0.746	0.423	1e-122
193667016	609	PREDICTED: replication protein A 70 kDa	0.586	0.756	0.437	1e-118
195390608	609	GJ23056 [Drosophila virilis] gi|19415204	0.568	0.733	0.405	1e-114
357603407	598	replication protein A1 [Danaus plexippus	0.582	0.765	0.415	1e-113
345494357	584	PREDICTED: replication protein A 70 kDa	0.581	0.782	0.412	1e-113
195108849	610	GI24276 [Drosophila mojavensis] gi|19391	0.562	0.724	0.395	1e-111
195572613	603	GD20882 [Drosophila simulans] gi|1942002	0.578	0.754	0.419	1e-111
195330772	603	GM26360 [Drosophila sechellia] gi|194121	0.578	0.754	0.417	1e-111

>gi|347965864|ref|XP_321709.4| AGAP001421-PA [Anopheles gambiae str. PEST] gi|333470320|gb|EAA01767.4| AGAP001421-PA [Anopheles gambiae str. PEST]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/531 (43%), Positives = 321/531 (60%), Gaps = 70/531 (13%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG ++ SFAMLATQLND+     L ++TI++I RY  S V+      + VLII+EL +
Sbjct: 47  ISDGKSLYSFAMLATQLNDLQKQDKLPQYTIIRIDRYTTSVVNRNEKGEKRVLIIVELTV 106

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHN-------NVAIPRQASA 437
           +K G+ +G KIG+PQP+       +T Q PA     GS+ + N       N ++   ++ 
Sbjct: 107 LKEGSLVGEKIGDPQPMTDTPSQPATTQAPARPMDTGSSSMGNGASYGSANRSLSGGSAG 166

Query: 438 PVVQ-----THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
           P        THPI SLSPYQNKW IKARV +K+ IR W+NA+G GKLFS+D++DESGEIR
Sbjct: 167 PTQSIGDSLTHPISSLSPYQNKWVIKARVMSKSGIRTWSNAKGEGKLFSMDVMDESGEIR 226

Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
            T F ++C+R++DMIE DKVY+IS C LKPANK+++S+ NDYEM+ T+ T V  C +D  
Sbjct: 227 ITAFKEQCDRYYDMIEVDKVYFISKCQLKPANKQYTSLKNDYEMTMTNDTIVQEC-KDAD 285

Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
           G+MP ++Y FVP+  IA + P+  +DV+G+C DA+++   T KT+ +   KR+ITLVD S
Sbjct: 286 GSMPEIQYNFVPISQIANMEPNAMVDVIGMCKDASDVVQFTAKTSGRELRKREITLVDSS 345

Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN----------------------- 649
            ASV +TLWG +A+ F A+  PV+ +K ARVSEF G                        
Sbjct: 346 NASVQLTLWGDDAQNFPATTHPVVLLKGARVSEFGGGKSLGLIGGSVMKLNPDLEMAHKV 405

Query: 650 -----------------------------LLLMREIQDQQLGMGDKADYCSVRGIIQVFR 680
                                         L  +E +D+ LG GDK DY  V+ +I   +
Sbjct: 406 RGWFENGGSEASVSSVSARTGGAAGVSTEWLSFQEAKDKNLGAGDKPDYFQVKAMIHTIK 465

Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
            +N  YKACP  DCNKKVIDQ NG +RCEKCN EF  F YRL++ ++IGDWT++ WVT+F
Sbjct: 466 SANAVYKACPQADCNKKVIDQENGQFRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTVF 525

Query: 741 QNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHYNK 786
              AE +LG ++QE+G S E      + LFT      ++F+LR K+E++ +
Sbjct: 526 TELAEEMLGKSSQEIGSSLEYQKEEAEKLFTSISFKSFVFKLRTKVEYFGE 576

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133641|ref|XP_001662954.1| replication factor a 1, rfa1 [Aedes aegypti] gi|108870757|gb|EAT34982.1| AAEL012826-PA [Aedes aegypti]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/537 (42%), Positives = 329/537 (61%), Gaps = 80/537 (14%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG N+ SFAMLATQLN++  +G L+EFT+++I RYI S V+      + VLIIL+L++
Sbjct: 48  ISDGQNLYSFAMLATQLNELHHNGQLAEFTVIRIDRYITSVVNRNEKGEKRVLIILDLHV 107

Query: 385 IKPGTEIGFKIGNPQPLN-----TNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ----- 434
           +KPG  +G KIGNPQ L      +    +ST   PA T + GS  V N  A   +     
Sbjct: 108 VKPGAAVGEKIGNPQTLTETGAGSGGGAASTSAVPARTESAGS--VSNGSAYQNRPMGGG 165

Query: 435 -ASAPV---------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
            +SAP            THPI SLSPYQNKW I+ARV +K+ IR W+NA+G GKLFS+D+
Sbjct: 166 MSSAPSGGDGLSLENTLTHPINSLSPYQNKWVIRARVMSKSGIRTWSNAKGEGKLFSMDV 225

Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
           +DESGEIR T F D+C++++DMIE DKVYYI+ C LKPANK++S++ NDYEM+ T+ T V
Sbjct: 226 MDESGEIRVTAFKDQCDKYYDMIEVDKVYYITKCQLKPANKQYSTLKNDYEMTMTNDTIV 285

Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
             C +D   +MPS++Y FVP+  I  + P+  IDV+GVC +A E+   T +++ +   KR
Sbjct: 286 QEC-KDAGSSMPSIQYNFVPISQIGNMEPNAMIDVIGVCKEAGEVMQFTARSSGRELKKR 344

Query: 605 DITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL------------ 652
           ++TLVD S A+V++TLWG +A+ F+A+N PV+ +K ARV+EF G   L            
Sbjct: 345 EVTLVDSSNAAVSLTLWGDDAQNFNATNNPVLVIKGARVTEFGGGKSLGLVASSVLKTNP 404

Query: 653 ----------------------------------------MREIQDQQLGMGDKADYCSV 672
                                                     E +++ LG GDK DY  V
Sbjct: 405 DNEEAHKIRGWYLGGGCDNVVNSVSTRTGAGAGYSTEWITFHEAKEKNLGAGDKPDYFQV 464

Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
           + +I   + +N  YKACP  +CNKKVIDQ+NG YRCEKCN +F  F YRL++ +++GDWT
Sbjct: 465 KALIHNIKSANAVYKACPQAECNKKVIDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWT 524

Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHY 784
           ++ WVT+F + AE +LG ++Q++G++ E +    + +F+      Y+F+LR K+E Y
Sbjct: 525 SNRWVTVFTDLAEQMLGKSSQDIGDALEFNKDEAEQIFSAINFKSYVFKLRTKVEFY 581

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032512|ref|XP_001844125.1| replication protein A 70 kDa DNA-binding subunit [Culex quinquefasciatus] gi|167872595|gb|EDS35978.1| replication protein A 70 kDa DNA-binding subunit [Culex quinquefasciatus]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/531 (42%), Positives = 324/531 (61%), Gaps = 72/531 (13%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG  + SFAMLATQLN++   G L+EFT+++I R+I S V+      + VLIIL+L +
Sbjct: 48  ISDGQYLYSFAMLATQLNEMHHSGQLAEFTVIRIDRFITSVVNRNERGEKRVLIILDLTV 107

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSS--------TQQTPAATNTNGS---NGVHNNVAIPR 433
           +KPG+ +G KIGNPQPL    + S         T+   A   +NGS   N ++++V+   
Sbjct: 108 VKPGSAVGVKIGNPQPLTEGGNPSGGAASSGAPTRTESAGAVSNGSSYQNRLNSSVSASN 167

Query: 434 --QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
             Q+S     THPI SLSPYQNKW IKARV +K+ IR W+NA+G GKLFS+D++DESGEI
Sbjct: 168 STQSSLQESLTHPINSLSPYQNKWVIKARVMSKSAIRTWSNAKGEGKLFSMDIMDESGEI 227

Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
           R T F ++C++F+DMIE DKVYYI+ C LKPANK++S++ NDYEM+ ++ T +  C +D 
Sbjct: 228 RVTAFKEQCDKFYDMIEADKVYYITKCQLKPANKQYSTLKNDYEMTMSNETIIQEC-KDV 286

Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
             +MP ++Y FVP+  I  + P+  IDV+GVC +A+EL++ T K++ +   KR++T+VD 
Sbjct: 287 DASMPGIQYNFVPISQITNMEPNAMIDVVGVCKEASELNTFTAKSSGRELTKREVTMVDS 346

Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL------------------- 652
           S A+V +TLWG +A+ F  S  PV+ VK ARV+EF G   L                   
Sbjct: 347 SNAAVQLTLWGADAQNFPTSTNPVVVVKGARVTEFGGGKSLGLVGGSVMKLNPDIDVAHK 406

Query: 653 ----------------------------------MREIQDQQLGMGDKADYCSVRGIIQV 678
                                               E +++ LG GDK DY  V+ ++  
Sbjct: 407 IRGWYDNGGCDAVINSVSTRTGAAGGSYSTEWMTFHETKEKNLGHGDKPDYFQVKALVHN 466

Query: 679 FRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
            +  N  YKACP  DCNKKV+DQ+NG YRCEKCN +F  F YRL++ +++GDWT++ WVT
Sbjct: 467 IKSGNAVYKACPQTDCNKKVVDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWTSNRWVT 526

Query: 739 LFQNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHY 784
           +F    E +LG T+QE+G++ E +    + +F+      +IF+LR K+E Y
Sbjct: 527 VFTELGEQMLGKTSQEIGDALEYNKDEAEQIFSNISFASFIFKLRTKVEFY 577

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193667016|ref|XP_001951063.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Acyrthosiphon pisum]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/524 (43%), Positives = 321/524 (61%), Gaps = 63/524 (12%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG N+NSFAMLATQLN +++ G ++EF+I+QIKR+I+S ++  S  ++ V+I+++L +
Sbjct: 47  ISDGHNLNSFAMLATQLNGMVSSGEINEFSILQIKRHIISSLTDRSKGSKQVMILIDLAV 106

Query: 385 IKPGTEIGFKIGNPQPLNTNTD-------NSSTQQTPAATNTNGSNGVHNNVAI-PRQAS 436
           + PG  +G KIG+P+P+  N+        ++S   TP + +   S+ V ++V     Q  
Sbjct: 107 MVPGDVVGSKIGDPKPIIDNSGQIVENGASASVDSTPQSNSLAKSHSVQSSVINNGLQRD 166

Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
             V   HPI SLSPYQNKWTI+ARV NK P+R WNN RG GKLFS+DLLDESGEIRAT F
Sbjct: 167 IDVSNIHPINSLSPYQNKWTIRARVVNKAPVRTWNNQRGEGKLFSMDLLDESGEIRATAF 226

Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
           N EC++F DMIE +KVY+I+   +K ANKKFS++NNDYE++ +  T + PC++ +   MP
Sbjct: 227 NSECDKFFDMIEVNKVYFITRGAIKTANKKFSNLNNDYELTLSGETQIFPCHDFDDSQMP 286

Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
           ++K+ FVPL  + ++  D  +DV+GVC  A EL+ +  KT +K   KRD+T+VDQS +SV
Sbjct: 287 ALKFNFVPLSQVKDVDVDGIVDVIGVCQTAGELTMLMSKTTRKELKKRDVTIVDQSLSSV 346

Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGN--------------------------- 649
           T+TLW  +AE FD S +PVIA+K +R+ EF G+                           
Sbjct: 347 TITLWDTQAEDFDGSLQPVIAIKGSRIREFMGSKSLSLLGSTVMQINPDIDEAHRLRGWY 406

Query: 650 -----------------------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 686
                                   L ++  Q  QLG GDKADY S+   +   +  +  Y
Sbjct: 407 DSLPSNAEFTSISARSDVGANNQFLTIKGAQLAQLGSGDKADYYSMYSHLIFVKSESALY 466

Query: 687 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
           KACP  DC KKVID+N+G YRCEKCN E   F YRL+L   + D T + WVT+FQ  AES
Sbjct: 467 KACPKPDCQKKVIDRNDGTYRCEKCNDETENFKYRLMLSAQLSDSTGNQWVTMFQETAES 526

Query: 747 ILGVTAQEVG----ESTEDHP-ALKKALFTQYIFRLRAKLEHYN 785
           +LG T+ E+G    ES E++    +  +F  +  R RAK+E YN
Sbjct: 527 LLGTTSAELGRLMEESKEEYSDVFQNQMFKLFDIRARAKMETYN 570

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195390608|ref|XP_002053960.1| GJ23056 [Drosophila virilis] gi|194152046|gb|EDW67480.1| GJ23056 [Drosophila virilis]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/537 (40%), Positives = 309/537 (57%), Gaps = 90/537 (16%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG   NS+AMLA+QLN++   G L+E TIV++ +Y+ S V    +  R VLI+ EL +
Sbjct: 47  MSDGKYYNSYAMLASQLNEMQNRGLLNENTIVRLDKYMTSMVGKEGSGKR-VLIVTELTV 105

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQT---PAATNTNGSNGVHNNVAIPRQASAPVVQ 441
           +  G E+  KIG+P       +N++ Q T   PAA        V  +V + ++ S     
Sbjct: 106 LNSGDEVKSKIGDP----VTYENAAKQDTAPKPAA--------VAASVPVKKEQSYNNNN 153

Query: 442 ------------------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID 483
                             THPI SLSPYQNKW IKARVT+KT IR W+NARG GKLFS+D
Sbjct: 154 NNNHTMNSTLNGTLNSSLTHPISSLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMD 213

Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTT 543
           L+DESGEIRAT F ++C++F+D+IE D VY+ S C LKPANK++S + NDYEM+FT+ T 
Sbjct: 214 LMDESGEIRATAFKEQCDKFYDLIEVDNVYFFSKCQLKPANKQYSQLKNDYEMTFTNETM 273

Query: 544 VIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
           V PC++++ G +P +K+  VP+  +A +   E +D +G+C +  EL + T +T  K + K
Sbjct: 274 VQPCDDEDNGGIPEIKFDLVPISQVANMENKEAVDTIGICKEVGELQAFTSRTTNKEFKK 333

Query: 604 RDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--------------- 648
           R++TLVD S A+VT+TLWG EA  FD   +PVI VK +R++EF G               
Sbjct: 334 RELTLVDMSNAAVTLTLWGDEAVNFDGHVQPVILVKGSRINEFNGGKSLSMGGGSILKIN 393

Query: 649 ------------------------------------NLLLMREIQDQQLGMGDKADYCSV 672
                                               + + +++ + + LG GDK DY   
Sbjct: 394 PDIPEAHKLRGWFDNGGGDNISNMVSARTGGGSFSTDWVTLKDARLRNLGSGDKPDYFQC 453

Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
           + ++ + +  N  YKACP  DCNKKV+D+ NG YRCE+CN  F  F YRL++ + IGDWT
Sbjct: 454 KAVVHIVKQENAFYKACPQADCNKKVVDEGNGQYRCERCNAAFPNFKYRLLINMSIGDWT 513

Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
           ++ WVT F    E +L   AQEVGE+ E+ PA  + +     F+ YIF+LR K E Y
Sbjct: 514 SNRWVTCFSETGEQLLKHNAQEVGEALENDPAAAEKMFADINFSSYIFKLRCKNEMY 570

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603407|gb|EHJ63750.1| replication protein A1 [Danaus plexippus]

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/522 (41%), Positives = 307/522 (58%), Gaps = 64/522 (12%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG + +S A+L +QLN+ +  G LS ++++++ +Y +S V       + V++IL L I
Sbjct: 44  VSDGKHSHSLALLNSQLNNKVFSGELSNYSVIKVDKYFISSVQK--KEEKRVMVILNLTI 101

Query: 385 IKPGTEIGFKIGNP----QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVV 440
           I PG E+G K+G+P    + + + +  S+T+  P    T  SN       I   +S    
Sbjct: 102 IAPGAEVGKKLGDPIQWSEDMTSPSYASTTKAEPKPVPTPMSNLSKTTAGINLNSSVLSS 161

Query: 441 Q-THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
           Q THPI SLSPYQNKW IKARV NKT IR W+NA+G GKLFS+DL DESGEIRAT F +E
Sbjct: 162 QMTHPIASLSPYQNKWVIKARVMNKTAIRTWSNAKGEGKLFSMDLCDESGEIRATAFKNE 221

Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
           C++F+DMI+ DKVYYIS C LK ANK+++++ NDYEM+FT  T V  C E E  ++PS+K
Sbjct: 222 CDKFYDMIQIDKVYYISRCQLKTANKQYTTLKNDYEMTFTADTVVSECME-ESNSVPSIK 280

Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
           Y F+P+  IA+  PD  +DV+GVC  A+++  +T K+  K   KR+ TLVD S  ++T+T
Sbjct: 281 YDFMPISDIADKGPDTILDVIGVCKSASDIQELTAKSTGKLLKKREATLVDSSGGAITLT 340

Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLLL--------------------------- 652
           LWG EAE FD S+ PV+AVK AR++EF G+  L                           
Sbjct: 341 LWGAEAEKFDGSSNPVVAVKGARLAEFNGSKSLSCLASTIVRVQPDVEEAHRLRGWYDNG 400

Query: 653 ------------------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
                                     E ++++LG GDKADY S+ G++      N  YKA
Sbjct: 401 GDSMAMVHISARVGQGGGNAEWMTFAEAEERRLGTGDKADYFSLLGVLTFTFADNAVYKA 460

Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
           CP + CNKK++DQ NG+YRCEKCN+E+  + YRL+L   + D T    VT F   AE +L
Sbjct: 461 CPQEQCNKKLVDQQNGLYRCEKCNREYPNYKYRLLLGATVSDPTGDQRVTAFNESAEVML 520

Query: 749 GVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
           G +A+EVG  ++   A     L    F  ++F+ R K+E Y+
Sbjct: 521 GRSAEEVGRLSDYDKAEYGQLLDHVKFKTFVFKFRTKIETYS 562

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494357|ref|XP_003427279.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like, partial [Nasonia vitripennis]

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/531 (41%), Positives = 312/531 (58%), Gaps = 74/531 (13%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG+  NSF MLATQLND+IT+ TLSE +IV+IKRY +S V++G  T R+V++IL + +
Sbjct: 44  VSDGILSNSFTMLATQLNDLITNNTLSEHSIVKIKRYAISTVNNG-GTQRNVMVILSIEV 102

Query: 385 IKPGTEIGFKIGNPQPLNTNTD-------------NSSTQQTPAATNTNGSNGVHNNVAI 431
           + PG EIG  +GN    NT T+             +++ Q    A+  N     H N ++
Sbjct: 103 LVPGHEIGRVLGNVNANNTRTEEAAPAATLATALRSNNQQNAKPASRINNPAVNHLNESL 162

Query: 432 PRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
               +   +   PI +LSPYQN+W IK RVTNK+PIR W+N+RG GKLFSIDLLDESGEI
Sbjct: 163 LNGGNG--INATPIAALSPYQNRWVIKVRVTNKSPIRTWSNSRGEGKLFSIDLLDESGEI 220

Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
           R T F D+C++F+DMIE  KVYYIS C LKPANK+F+++ NDYEM+ T  + +  CNE+ 
Sbjct: 221 RCTAFRDQCDKFYDMIEIGKVYYISRCQLKPANKQFNNLKNDYEMTLTSDSEIAICNEEN 280

Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
            G +P++++ FVP+ T+   S DE IDVLG+    +++ ++T +T  +   KRDI +VD+
Sbjct: 281 EG-IPTLQFDFVPINTVEAKSKDELIDVLGIVKTCSDIQTLTARTTGRELKKRDIGIVDE 339

Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--NL------------------- 650
           +   +T+TLWG +A  FD S  PVIA+K A++ EF G  NL                   
Sbjct: 340 NNDLITVTLWGTQAIDFDGSTNPVIAIKGAKIGEFNGGKNLSLVASSMLQVDPDIPQAHR 399

Query: 651 -------------------------------LLMREIQDQQLGMGDKADYCSVRGIIQVF 679
                                          L  +E++D + G  D  +    +  + + 
Sbjct: 400 LRGWFKTVGATEESRSLSRTLGGGGNLNGPWLTFKEVEDNRFGHQDMPNMFIAKATVNLI 459

Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
           R  N  YK+CPS+ C KKVIDQ+NGMY+CEKC++++  FTYRL+    + DWT + W T 
Sbjct: 460 RAENALYKSCPSEGCKKKVIDQSNGMYKCEKCSRDYPNFTYRLLASTNLVDWTGNQWATA 519

Query: 740 FQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
           F  EAE +L  +AQE+GE  E         +  A F  YIF+LR +LE++N
Sbjct: 520 FNEEAEVLLSASAQELGELKEKDGDTYMEKIGAAAFKSYIFKLRIRLENFN 570

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195108849|ref|XP_001999005.1| GI24276 [Drosophila mojavensis] gi|193915599|gb|EDW14466.1| GI24276 [Drosophila mojavensis]

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/544 (39%), Positives = 304/544 (55%), Gaps = 102/544 (18%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG   NS+AMLA+QLN++   G L+E TIV++ +Y+ S V    +  R VLI+ E+ +
Sbjct: 46  MSDGKYYNSYAMLASQLNEMQHKGLLNENTIVRLDKYMTSMVGKEGSGKR-VLIVTEVTV 104

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ--- 441
           +  G E+  KIG P       +N++ Q T                A P  ASAPV +   
Sbjct: 105 LNSGDEVKTKIGEP----VTYENAAKQDTVPK-------------AAPVTASAPVKKEQS 147

Query: 442 -------------------------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
                                    THPI SLSPYQNKW IKARVT+KT IR W+NARG 
Sbjct: 148 YNNNNNNNNNNTMNSTMNGTLNASLTHPIASLSPYQNKWVIKARVTSKTAIRTWSNARGE 207

Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
           GKLFS+DL+DESGEIRAT F ++C++F+D+IE   VY+ S C LKPANK++S + NDYEM
Sbjct: 208 GKLFSMDLMDESGEIRATAFKEQCDKFYDLIEVGNVYFFSKCQLKPANKQYSQLKNDYEM 267

Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
           +FT  T V  C+ED+ G +P +K+  +P+  ++ +   E +D +G+C +  EL + T +T
Sbjct: 268 TFTGETMVQLCDEDDNGGIPEIKFDLIPISQVSNMENKEAVDTIGICKEVGELQTFTSRT 327

Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------- 648
             K + KR++TLVD S A+VT+TLWG EA  FD   +PVI VK +R++EF G        
Sbjct: 328 TNKEFKKRELTLVDMSNAAVTLTLWGDEAVNFDGHVQPVILVKGSRINEFNGGKSLSMGG 387

Query: 649 -------------------------------------------NLLLMREIQDQQLGMGD 665
                                                      + + +++ + + LG GD
Sbjct: 388 GSILKINPDIPEAHKLRGWFDNGGGDNISTMVSARTGGGSFSTDWVTLKDARIRNLGSGD 447

Query: 666 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 725
           K DY   + ++ + +  N  YKACP  DCNKKV+D+ NG YRCE+CN  F  F YRL++ 
Sbjct: 448 KPDYFQCKAVVHIVKQENAFYKACPQTDCNKKVVDEGNGQYRCERCNAAFPNFKYRLLIN 507

Query: 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAK 780
           + IGDWT++ WVT F    E +L  +AQEVG++ E+ PA  + +F+      YIF+LR K
Sbjct: 508 MSIGDWTSNRWVTCFSEVGEQLLKHSAQEVGDALENDPATAEKMFSDINFSSYIFKLRCK 567

Query: 781 LEHY 784
            E Y
Sbjct: 568 NEMY 571

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195572613|ref|XP_002104290.1| GD20882 [Drosophila simulans] gi|194200217|gb|EDX13793.1| GD20882 [Drosophila simulans]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/524 (41%), Positives = 304/524 (58%), Gaps = 69/524 (13%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG   NS+AMLA+QLN +  +G L EFTIVQ+ +Y+ S V    A  R VLII EL +
Sbjct: 46  ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ---TPAATNTNG----SNGVHNNVAIPRQASA 437
           + PG E+  KIG P       +N++ Q     PAAT+ +        +HNN       S+
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKPAATSNSKPVAKKEPIHNNNNNVVMNSS 160

Query: 438 -PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
                THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220

Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
            ++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+  T V  C + +   +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280

Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
            +KY  VP+  ++ +     +D +G+C +  EL S   +T  K + KRDITLVD S +++
Sbjct: 281 EIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAI 340

Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
           ++TLWG +A  FD   +PVI VK  R++EF                              
Sbjct: 341 SLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400

Query: 648 --------GNLLLMR--------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
                    N++  R              + + + LG GDK DY   + ++ + +  N  
Sbjct: 401 DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAF 460

Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
           Y+ACP  DCNKKVID+ N  +RCEKCN  F  F YRL++ + IGDWT++ WV+ F    E
Sbjct: 461 YRACPQSDCNKKVIDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520

Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
            +LG T+QEVGE+ E+ PA  + +     FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330772|ref|XP_002032077.1| GM26360 [Drosophila sechellia] gi|194121020|gb|EDW43063.1| GM26360 [Drosophila sechellia]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/524 (41%), Positives = 304/524 (58%), Gaps = 69/524 (13%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG   NS+AMLA+QLN +  +G L EFTIVQ+ +Y+ S V    A  R VLII EL +
Sbjct: 46  ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ---TPAATNTNG----SNGVHNNVAIPRQASA 437
           + PG E+  KIG P       +N++ Q     PAAT+ +        +HNN       S+
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKPAATSNSKPVAKKEPIHNNNNNVVMNSS 160

Query: 438 -PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
                THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220

Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
            ++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+  T V  C + +   +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280

Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
            +KY  VP+  ++ +     +D +G+C +  EL S   +T  K + KRDITLVD S +++
Sbjct: 281 EIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAI 340

Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
           ++TLWG +A  FD   +PVI VK  R++EF                              
Sbjct: 341 SLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400

Query: 648 --------GNLLLMR--------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
                    N++  R              + + + LG GDK DY   + ++ + +  N  
Sbjct: 401 DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAF 460

Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
           Y+ACP  DCNKKV+D+ N  +RCEKCN  F  F YRL++ + IGDWT++ WV+ F    E
Sbjct: 461 YRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520

Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
            +LG T+QEVGE+ E+ PA  + +     FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	786
FB|FBgn0010173	603	RpA-70 "Replication Protein A	0.456	0.595	0.451	2.4e-110
RGD|1307376	680	Rpa1 "replication protein A1"	0.262	0.302	0.504	5e-104
MGI|MGI:1915525	623	Rpa1 "replication protein A1"	0.403	0.508	0.401	2.5e-65
POMBASE|SPBC660.13c	609	ssb1 "DNA replication factor A	0.412	0.532	0.364	3.2e-81
ASPGD|ASPL0000065893	603	AN7423 [Emericella nidulans (t	0.389	0.507	0.378	4.1e-75
UNIPROTKB|I3LSJ9	550	I3LSJ9 "Uncharacterized protei	0.399	0.570	0.387	1.8e-74
UNIPROTKB|E2R436	616	RPA1 "Uncharacterized protein"	0.403	0.514	0.404	2e-65
UNIPROTKB|P27694	616	RPA1 "Replication protein A 70	0.403	0.514	0.401	9.4e-66
UNIPROTKB|Q0VCV0	616	RPA1 "Replication protein A1,	0.403	0.514	0.395	2.9e-66
UNIPROTKB|Q5ZJJ2	614	RPA1 "Replication protein A 70	0.403	0.516	0.411	5.2e-65

FB|FBgn0010173 RpA-70 "Replication Protein A 70" [Drosophila melanogaster (taxid:7227)]

 Score = 769 (275.8 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
 Identities = 167/370 (45%), Positives = 224/370 (60%)

Query:   284 GVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLND 343
             GV A+ +     D P L+  L  + I    A  E Y     I DG   NS+AMLA+QLN 
Sbjct:     9 GVIARIMHGEVVDAPVLQ-ILAIKKI-NSAADSERYRIL--ISDGKYFNSYAMLASQLNV 64

Query:   344 IITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLXX 403
             +  +G L EFTIVQ+ +Y+ S V    A  R VLII EL ++ PG E+  KIG P     
Sbjct:    65 MQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTVVNPGAEVKSKIGEPVTYEN 123

Query:   404 XXXXXXXXXXPAATNTNG----SNGVHNNVA-IPRQASAPVVQTHPIVSLSPYQNKWTIK 458
                       PA T+ +         HNN   I   +S     THPI SLSPYQNKW IK
Sbjct:   124 AAKQDLAPK-PAVTSNSKPIAKKEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIK 182

Query:   459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518
             ARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F ++C++F+D+I+ D VYYIS C
Sbjct:   183 ARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKC 242

Query:   519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 578
              LKPANK++SS+NN YEM+F+  T V  C + +   +P +KY  VP+  ++ +     +D
Sbjct:   243 QLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVD 302

Query:   579 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 638
              +G+C +  EL S   +T  K + KRDITLVD S +++++TLWG +A  FD   +PVI V
Sbjct:   303 TIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILV 362

Query:   639 KAARVSEFQG 648
             K  R++EF G
Sbjct:   363 KGTRINEFNG 372

GO:0003697 "single-stranded DNA binding" evidence=NAS;IDA

GO:0006261 "DNA-dependent DNA replication" evidence=NAS;IDA

GO:0005662 "DNA replication factor A complex" evidence=NAS;IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

RGD|1307376 Rpa1 "replication protein A1" [Rattus norvegicus (taxid:10116)]

 Score = 565 (203.9 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
 Identities = 105/208 (50%), Positives = 151/208 (72%)

Query:   444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
             PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F
Sbjct:   173 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKF 232

Query:   504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
               +IE +KVYY S  TLK ANK+FS++ NDYEM+F + T+V+PC +    ++P+V++ F 
Sbjct:   233 FPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFT 290

Query:   564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
              +  +   S D  +D++G+C    + + +T K+N +   KR+I L+D S   VT TLWG+
Sbjct:   291 GIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGE 350

Query:   624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
             +A+ FD S +PV+A+K ARVS+F G  L
Sbjct:   351 DADKFDGSRQPVMAIKGARVSDFGGRSL 378

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA;ISO

GO:0000793 "condensed chromosome" evidence=ISO

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0000800 "lateral element" evidence=IEA;ISO

GO:0001673 "male germ cell nucleus" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005662 "DNA replication factor A complex" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006260 "DNA replication" evidence=IC

GO:0007126 "meiosis" evidence=IEA;ISO

GO:0008284 "positive regulation of cell proliferation" evidence=IEA;ISO

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0016605 "PML body" evidence=IEA;ISO

GO:0030097 "hemopoiesis" evidence=IEA;ISO

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA;ISO

GO:0051276 "chromosome organization" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1915525 Rpa1 "replication protein A1" [Mus musculus (taxid:10090)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 131/326 (40%), Positives = 189/326 (57%)

Query:     6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
             ANK+FS++ NDYEM+F + T+V+PC +    ++P+V++ F  +  +   + D  +D++G+
Sbjct:   274 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGI 331

Query:    66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
             C    +   +T K+N +   KR+I L+D S   VT TLWG++A+ FD S +PV+A+K AR
Sbjct:   332 CKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 391

Query:   126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
             VS+F GG++           NPDIPE +KL+GWF ++        +S             
Sbjct:   392 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTN 450

Query:   185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
                  E + + LG GDKADY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct:   451 WKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 510

Query:   245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
             KC++EF  F YR+IL   I D+  + WVT FQ  AE+ILG     +GE  E +       
Sbjct:   511 KCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFEEV 570

Query:   300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
              + A F  + FR+R KLE YN   +I
Sbjct:   571 FQNANFRSFTFRIRVKLETYNDESRI 596

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0000793 "condensed chromosome" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0000800 "lateral element" evidence=IDA

GO:0001673 "male germ cell nucleus" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005662 "DNA replication factor A complex" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007126 "meiosis" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0016605 "PML body" evidence=ISO

GO:0030097 "hemopoiesis" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IMP

GO:0051276 "chromosome organization" evidence=IMP

POMBASE|SPBC660.13c ssb1 "DNA replication factor A subunit Ssb1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 554 (200.1 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
 Identities = 125/343 (36%), Positives = 198/343 (57%)

Query:   325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIIL-ELN 383
             + D +N    +ML+TQLN ++ +  L +   VQ+ ++ V+ +          L +L EL 
Sbjct:    51 LSDSINYAQ-SMLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELG 109

Query:   384 II-KPGTEIGFKIGNPQPLXXXXXXXXXXXXPA---ATNTN---GSNGVHNNVAIP---R 433
             ++ K G   G +      L            P    +T+TN   G+N      A P   +
Sbjct:   110 VMDKIGNPAGLE--TVDALRQQQNEQNNASAPRTGISTSTNSFYGNNAAATAPAPPPMMK 167

Query:   434 QASAP-VVQT--HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
             + +AP  + T  +PI  LSPYQNKWTI+ARVTNK+ ++ W+N RG GKLFS++LLDESGE
Sbjct:   168 KPAAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGE 227

Query:   491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
             IRAT FND+ + F+D++++  VYYIS C +  A K+++++ N+YE+ F   T +    ED
Sbjct:   228 IRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-ED 286

Query:   551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
             +   +P  K+ FV L+ + +++ D  IDV+GV  +   +  +T +   + + KRDIT+VD
Sbjct:   287 QTA-VPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVD 345

Query:   611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
             Q+   + +TLWGK A  F  S + ++A K  +V++FQG  L M
Sbjct:   346 QTGYEMRVTLWGKTAIEFSVSEESILAFKGVKVNDFQGRSLSM 388

GO:0000723 "telomere maintenance" evidence=IGI;IMP

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0000781 "chromosome, telomeric region" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005662 "DNA replication factor A complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=IMP

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=ISO

GO:0006281 "DNA repair" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IDA

ASPGD|ASPL0000065893 AN7423 [Emericella nidulans (taxid:162425)]

 Score = 564 (203.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 124/328 (37%), Positives = 190/328 (57%)

Query:   336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
             MLA Q N  +TDG L +   V++K++      + S   + +LI+L+L ++K   E   K+
Sbjct:    61 MLAIQANHFVTDGLLRKGCFVRLKQF-----QANSVKGKKILIVLDLEVLKELGEAE-KL 114

Query:   396 GNPQPLXXXXXXXXXXXXPAATNTNGSNGVHNNVAI-----------PRQASAPVVQTHP 444
             G P+PL            P   ++NG  G     A            P Q SAP    +P
Sbjct:   115 GEPKPLESKAEEEEKPQ-PTTISSNGFYGAKAQNAPSQISSRAQHTRPMQGSAPAT-IYP 172

Query:   445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
             I ++SPY +KWTIKAR T+K+PI+ ++   G G LFS++LLD+SGEIRAT FN++C+  +
Sbjct:   173 IEAISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLDDSGEIRATGFNEQCSALY 232

Query:   505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
             D+ ++ +VYYIS+ C ++ A K+F+++NNDYE++F   T V    E    ++P V++ F 
Sbjct:   233 DLFQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVEKAEEQN--DVPQVRFNFT 290

Query:   564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
              +  +  +  D  IDV+GV  D  E + +  KT +K Y KR++TLVD +  SV +T+WG 
Sbjct:   291 TIGDLQSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGT 350

Query:   624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
              A  F AS + V+A K  +VS+F G  L
Sbjct:   351 TAMNFAASPESVVAFKGVKVSDFGGKSL 378

GO:0005829 "cytosol" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IEA

UNIPROTKB|I3LSJ9 I3LSJ9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 573 (206.8 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
 Identities = 129/333 (38%), Positives = 193/333 (57%)

Query:   327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNR---SVLI----I 379
             DG+N  S  MLATQLN ++ +  LS   I QI R+IV+ +  G        + L+    I
Sbjct:    49 DGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDGRYVVGFFPAALLKWGPI 108

Query:   380 LELNIIKP----GTEIGFKIG----NPQPLXXXXXXXXXXXXPAATNTNGSNGVHNNVAI 431
              E     P    G +  F+      NPQ                A   +   G     ++
Sbjct:   109 CEQRACSPSPFSGLQGRFRASPPTSNPQQQNGSSGVAGSSTVSKAYGASKIFGKAGATSV 168

Query:   432 PRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
                +     +  PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEI
Sbjct:   169 VNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEI 228

Query:   492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
             RAT FN++ ++F  +I  D VYY S  TLK ANK+F+++ NDYEM+F++ T+V+PC +  
Sbjct:   229 RATAFNEQVDKFFPLI--DVVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPCEDGH 286

Query:   552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
               ++P+V++ F  +  +   S D  +D++G+C +  +++ +T K+  +   KR+I L+D 
Sbjct:   287 --HLPTVQFDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDM 344

Query:   612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVS 644
             S   V  TLWG++A+ FD S +PV+A+K ARVS
Sbjct:   345 SGKVVNATLWGEDADKFDGSRQPVMAIKGARVS 377

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2R436 RPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 132/326 (40%), Positives = 192/326 (58%)

Query:     6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
             ANK+F+++ NDYEM+F + T+V+PC +    ++P+V++ F  +  +   + D  ID++G+
Sbjct:   265 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKTKDSLIDIIGI 322

Query:    66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
             C    E + +T K+N +   KR+I L+D S   VT TLWG++A+ FD S +PV+A+K AR
Sbjct:   323 CKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGAR 382

Query:   126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
             VS+F GG++           NPDIPE +KL+GWF ++        +S             
Sbjct:   383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGTGGGNTN 441

Query:   185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
                  E++ + LG GDKADY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct:   442 WKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501

Query:   245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
             KC+ EF +F YR+IL V I D+  + WVT FQ  AE+I+G     +GE  E +       
Sbjct:   502 KCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQNTAYLGELKEKNEQAFEEV 561

Query:   300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
              + A F  + FR+R KLE YN   +I
Sbjct:   562 FQNANFRSFTFRIRVKLETYNDESRI 587

GO:0051276 "chromosome organization" evidence=IEA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000800 "lateral element" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit" [Homo sapiens (taxid:9606)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 131/326 (40%), Positives = 192/326 (58%)

Query:     6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
             ANK+F+++ NDYEM+F + T+V+PC +D   ++P+V++ F  +  +   S D  +D++G+
Sbjct:   265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322

Query:    66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
             C    + + +T ++N +   KR+I L+D S   VT TLWG++A+ FD S +PV+A+K AR
Sbjct:   323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382

Query:   126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
             VS+F GG++           NPDIPE +KL+GWF  +        +S             
Sbjct:   383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTN 441

Query:   185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
                  E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct:   442 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501

Query:   245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
             KC+ EF  F YR+IL V I D+  + WVT FQ  AE+ILG  A  +GE  + +       
Sbjct:   502 KCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEV 561

Query:   300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
              + A F  +IFR+R K+E YN   +I
Sbjct:   562 FQNANFRSFIFRVRVKVETYNDESRI 587

GO:0046872 "metal ion binding" evidence=IEA

GO:0000800 "lateral element" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006261 "DNA-dependent DNA replication" evidence=TAS

GO:0006310 "DNA recombination" evidence=TAS

GO:0005662 "DNA replication factor A complex" evidence=IPI

GO:0016605 "PML body" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0000724 "double-strand break repair via homologous recombination" evidence=TAS

GO:0000730 "DNA recombinase assembly" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=TAS

GO:0006302 "double-strand break repair" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|Q0VCV0 RPA1 "Replication protein A1, 70kDa" [Bos taurus (taxid:9913)]

 Score = 655 (235.6 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 129/326 (39%), Positives = 190/326 (58%)

Query:     6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
             ANK+F+++ NDYEM+F + T+V+PC +    ++P+V++ F  +  +   S D  +D++G+
Sbjct:   265 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 322

Query:    66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
             C +  +++ +  K+N +   KR+I L+D S   V  TLWG +A+ FD S +PV+A+K AR
Sbjct:   323 CKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGAR 382

Query:   126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
             VS+F GG++           NPDIPE +KL+GWF ++        +S             
Sbjct:   383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTN 441

Query:   185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
                  E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct:   442 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501

Query:   245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
             KC+ EF  F YR+IL V I D+  + WVT FQ  AE+ILG +   +GE  E +       
Sbjct:   502 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEV 561

Query:   300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
              + A F  + FR+R KLE YN   +I
Sbjct:   562 FQNANFRSFTFRIRVKLETYNDESRI 587

GO:0051276 "chromosome organization" evidence=IEA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000800 "lateral element" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q5ZJJ2 RPA1 "Replication protein A 70 kDa DNA-binding subunit" [Gallus gallus (taxid:9031)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 134/326 (41%), Positives = 190/326 (58%)

Query:     6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
             ANK+++++ NDYE++F + T+V+PC  D+  ++PSV++ FV +  +     D  +DV+G+
Sbjct:   262 ANKQYTAVKNDYEITFNNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGI 319

Query:    66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
             C    +++ +  K + +   KR++ L+D S   VT TLWG EAE FD S +PVIA+K AR
Sbjct:   320 CKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGAR 379

Query:   126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNT-RFEPVSQRTXXXXXXXXXX 184
             VS+F GG++           NPD PE  KL+GWF ++        +S             
Sbjct:   380 VSDF-GGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTN 438

Query:   185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
                  E + ++LG GDKADY S  G I   R  N  Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct:   439 WKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 498

Query:   245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
             KC++EF  F YR++L V I D  +  WVT FQ  AE ILG +A  +GE  + +       
Sbjct:   499 KCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDKNEQAFEEV 558

Query:   300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
              + A F  Y F++R KLE YN   +I
Sbjct:   559 FQNANFNTYEFKIRVKLETYNDESRI 584

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000800 "lateral element" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006302 "double-strand break repair" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	786
TIGR00617	608	TIGR00617, rpa1, replication factor-a protein 1 (r	1e-146
TIGR00617	608	TIGR00617, rpa1, replication factor-a protein 1 (r	1e-104
cd04474	104	cd04474, RPA1_DBD_A, RPA1_DBD_A: A subfamily of OB	6e-49
cd04476	166	cd04476, RPA1_DBD_C, RPA1_DBD_C: A subfamily of OB	1e-46
cd04476	166	cd04476, RPA1_DBD_C, RPA1_DBD_C: A subfamily of OB	7e-46
pfam08646	146	pfam08646, Rep_fac-A_C, Replication factor-A C ter	3e-45
pfam08646	146	pfam08646, Rep_fac-A_C, Replication factor-A C ter	3e-44
cd04475	101	cd04475, RPA1_DBD_B, RPA1_DBD_B: A subfamily of OB	1e-35
cd04475	101	cd04475, RPA1_DBD_B, RPA1_DBD_B: A subfamily of OB	1e-23
PRK12366	637	PRK12366, PRK12366, replication factor A; Reviewed	6e-18
COG1599	407	COG1599, RFA1, Single-stranded DNA-binding replica	2e-12
cd04477	97	cd04477, RPA1N, RPA1N: A subfamily of OB folds cor	8e-12
cd04480	86	cd04480, RPA1_DBD_A_like, RPA1_DBD_A_like: A subgr	1e-10
pfam04057	99	pfam04057, Rep-A_N, Replication factor-A protein 1	2e-10
cd04481	106	cd04481, RPA1_DBD_B_like, RPA1_DBD_B_like: A subgr	4e-09
PRK12366	637	PRK12366, PRK12366, replication factor A; Reviewed	1e-08
pfam01336	75	pfam01336, tRNA_anti, OB-fold nucleic acid binding	3e-08
cd04481	106	cd04481, RPA1_DBD_B_like, RPA1_DBD_B_like: A subgr	1e-06
PRK12366	637	PRK12366, PRK12366, replication factor A; Reviewed	8e-06
cd04491	82	cd04491, SoSSB_OBF, SoSSB_OBF: A subfamily of OB f	6e-05
pfam02721	95	pfam02721, DUF223, Domain of unknown function DUF2	8e-04
PRK08402	355	PRK08402, PRK08402, replication factor A; Reviewed	0.001
PRK08402	355	PRK08402, PRK08402, replication factor A; Reviewed	0.001
cd04474	104	cd04474, RPA1_DBD_A, RPA1_DBD_A: A subfamily of OB	0.003
pfam01485	63	pfam01485, IBR, IBR domain	0.003
pfam01485	63	pfam01485, IBR, IBR domain	0.003

>gnl|CDD|233055 TIGR00617, rpa1, replication factor-a protein 1 (rpa1)

 Score =  442 bits (1138), Expect = e-146
 Identities = 209/537 (38%), Positives = 289/537 (53%), Gaps = 82/537 (15%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           I DG+   S AMLATQLN ++ +G L E TI+++ ++ V+ +       R VLI+ EL +
Sbjct: 48  ISDGIY-YSKAMLATQLNPLVREGELQEGTIIRLTKFEVNTIGKDG---RKVLIVYELEV 103

Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ------------TPAATNTNGSNGVHNNVAIP 432
           +KP  ++  KIGNP       D+   +Q             P A         +NN A P
Sbjct: 104 VKPELKVRDKIGNPVTYEKYLDSWHEEQVLASKPATNPANPPNAKAPKNEVASYNNAANP 163

Query: 433 RQASAPVVQT-------HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
            + +AP            PI SLSPYQNKWTIKARVTNK+ IR W+NARG GKLF+++LL
Sbjct: 164 ERGNAPPAPNSGSTRRVMPIASLSPYQNKWTIKARVTNKSEIRTWSNARGEGKLFNVELL 223

Query: 486 DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
           DESGEIRAT FN++ ++F+D+I++ KVYYIS  +LKPANK+F+++ NDYEM+    T + 
Sbjct: 224 DESGEIRATAFNEQADKFYDIIQEGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIE 283

Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
            C ++    +P +++ FV +  I     +  +DV+G+    +   ++T + N K + KRD
Sbjct: 284 ECEDET--AIPKIQFNFVKIDDIGGYEGNSLVDVIGIVQSVSPTQTITSRKNNKEFPKRD 341

Query: 606 ITLVDQSQASVTMTLWGKEAET-------------------------------------- 627
           ITLVD S  SV +TLWG +A                                        
Sbjct: 342 ITLVDDSGKSVRVTLWGDDATKFDVSVQPVIAIKGVRVSDFGGKSLSTGGSSTIIVNPDI 401

Query: 628 ---------FDASNKPVIAV-----KAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVR 673
                    +D   K  +A       + RV         + EIQ + LG  DK DY SV+
Sbjct: 402 PEAEKLKGWYDNEGKGTMASSISDMMSGRVGGSNAERKTIAEIQAENLGKSDKPDYFSVK 461

Query: 674 GIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 733
             I   +  N  Y+ACPS+DCNKKV+DQ +G YRCEKCNK F  F YR IL + I D T 
Sbjct: 462 ATISYLKPDNALYRACPSEDCNKKVVDQGDGTYRCEKCNKNFAEFKYRYILQISISDETG 521

Query: 734 SVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
            +WVT F ++AE ILG +A E+GE  E+ P       ++A F  YIFRLR K + YN
Sbjct: 522 QLWVTAFNDQAEQILGKSAAELGELKEEDPDEFEAIFQEAQFVPYIFRLRVKQDTYN 578

All proteins in this family for which functions are known are part of a multiprotein complex made up of homologs of RPA1, RPA2 and RPA3 that bind ssDNA and function in the recognition of DNA damage for nucleotide excision repairThis family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 608

>gnl|CDD|233055 TIGR00617, rpa1, replication factor-a protein 1 (rpa1)

 Score =  333 bits (855), Expect = e-104
 Identities = 142/327 (43%), Positives = 196/327 (59%), Gaps = 9/327 (2%)

Query: 5   PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
           PANK+F+++ NDYEM+    T +  C ++    +P +++ FV +  I     +  +DV+G
Sbjct: 260 PANKQFTNLGNDYEMTLDRDTVIEECEDET--AIPKIQFNFVKIDDIGGYEGNSLVDVIG 317

Query: 65  VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
           +    +   ++T + N K + KRDITLVD S  SV +TLWG +A  FD S +PVIA+K  
Sbjct: 318 IVQSVSPTQTITSRKNNKEFPKRDITLVDDSGKSVRVTLWGDDATKFDVSVQPVIAIKGV 377

Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
           RVS+F GGK+LS   SS + +NPDIPE  KL+GW+  +   T    +S    G  GG+  
Sbjct: 378 RVSDF-GGKSLSTGGSSTIIVNPDIPEAEKLKGWYDNEGKGTMASSISDMMSGRVGGSNA 436

Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
               + EIQ + LG  DK DY SV+  I   +  N  Y+ACPS+DCNKKV+DQ +G YRC
Sbjct: 437 ERKTIAEIQAENLGKSDKPDYFSVKATISYLKPDNALYRACPSEDCNKKVVDQGDGTYRC 496

Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA---- 299
           EKCNK F  F YR IL + I D T  +WVT F ++AE ILG +A E+GE  E+ P     
Sbjct: 497 EKCNKNFAEFKYRYILQISISDETGQLWVTAFNDQAEQILGKSAAELGELKEEDPDEFEA 556

Query: 300 -LKKALFTQYIFRLRAKLEHYNGTKKI 325
             ++A F  YIFRLR K + YN   + 
Sbjct: 557 IFQEAQFVPYIFRLRVKQDTYNDESRQ 583

All proteins in this family for which functions are known are part of a multiprotein complex made up of homologs of RPA1, RPA2 and RPA3 that bind ssDNA and function in the recognition of DNA damage for nucleotide excision repairThis family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 608

>gnl|CDD|239920 cd04474, RPA1_DBD_A, RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

 Score =  167 bits (425), Expect = 6e-49
 Identities = 67/104 (64%), Positives = 84/104 (80%), Gaps = 1/104 (0%)

Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNR 502
           PI SL+PYQNKWTIKARVTNK+ IR W+NARG GKLFS DLLDE  GEIRAT FND  ++
Sbjct: 1   PISSLNPYQNKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDK 60

Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP 546
           F+D++E  KVYYIS  ++K ANKKF+++ NDYE++F   T++I 
Sbjct: 61  FYDLLEVGKVYYISKGSVKVANKKFNTLKNDYEITFNRDTSIIE 104

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functionally. Antibodies to hRPA do not cross-react with ScRPA, and null mutations in the ScRPA subunits are not complemented by corresponding human genes. Also, ScRPA cannot support Simian virus 40 (SV40) DNA replication in vitro, whereas human RPA can. Length = 104

>gnl|CDD|239922 cd04476, RPA1_DBD_C, RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70)

 Score =  163 bits (415), Expect = 1e-46
 Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 7/141 (4%)

Query: 190 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 249
           EI+++ LG G+K DY +V+  I   +  N  Y ACP   CNKKV+++ NG YRCEKCNK 
Sbjct: 3   EIKEENLGEGEKPDYFTVKATIVFIKPDNWWYPACP--GCNKKVVEEGNGTYRCEKCNKS 60

Query: 250 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKAL 304
                YR IL + + D T   W+TLF   AE I G +A+E+ E  E+ P     A++  +
Sbjct: 61  VPNPEYRYILSLNVADHTGEAWLTLFDEVAEQIFGKSAEELLELKEEDPDAFPDAIQDLV 120

Query: 305 FTQYIFRLRAKLEHYNGTKKI 325
              ++FR+  K E YN   +I
Sbjct: 121 GKTFLFRVSVKEETYNDEGRI 141

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding function of this domain. It appears that zinc itself may not be required for ssDNA binding. Length = 166

>gnl|CDD|239922 cd04476, RPA1_DBD_C, RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70)

 Score =  161 bits (409), Expect = 7e-46
 Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 7/136 (5%)

Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
           EI+++ LG G+K DY +V+  I   +  N  Y ACP   CNKKV+++ NG YRCEKCNK 
Sbjct: 3   EIKEENLGEGEKPDYFTVKATIVFIKPDNWWYPACP--GCNKKVVEEGNGTYRCEKCNKS 60

Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKAL 769
                YR IL + + D T   W+TLF   AE I G +A+E+ E  E+ P     A++  +
Sbjct: 61  VPNPEYRYILSLNVADHTGEAWLTLFDEVAEQIFGKSAEELLELKEEDPDAFPDAIQDLV 120

Query: 770 FTQYIFRLRAKLEHYN 785
              ++FR+  K E YN
Sbjct: 121 GKTFLFRVSVKEETYN 136

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding function of this domain. It appears that zinc itself may not be required for ssDNA binding. Length = 166

>gnl|CDD|149635 pfam08646, Rep_fac-A_C, Replication factor-A C terminal domain

 Score =  158 bits (402), Expect = 3e-45
 Identities = 60/127 (47%), Positives = 79/127 (62%), Gaps = 5/127 (3%)

Query: 204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 263
           Y SV+  I   +  N  Y ACPS+DCNKKV +Q +G +RCEKC+KEF    YR IL + I
Sbjct: 1   YFSVKATIVFIKQDNFWYPACPSEDCNKKVTEQGDGTWRCEKCDKEFPEPKYRYILSINI 60

Query: 264 GDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEH 318
            D T  +WVTLF   AE ILG++A+E+ E  E+         +KALF +Y+FRLR K E 
Sbjct: 61  SDHTGQIWVTLFNEAAEEILGMSAEELMELKEEDDNEFEKIFQKALFREYVFRLRVKEET 120

Query: 319 YNGTKKI 325
           YN   ++
Sbjct: 121 YNDESRV 127

This domain is found at the C terminal of replication factor A. Replication factor A (RPA) binds single-stranded DNA and is involved in replication, repair, and recombination of DNA. Length = 146

>gnl|CDD|149635 pfam08646, Rep_fac-A_C, Replication factor-A C terminal domain

 Score =  155 bits (395), Expect = 3e-44
 Identities = 60/122 (49%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 669 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 728
           Y SV+  I   +  N  Y ACPS+DCNKKV +Q +G +RCEKC+KEF    YR IL + I
Sbjct: 1   YFSVKATIVFIKQDNFWYPACPSEDCNKKVTEQGDGTWRCEKCDKEFPEPKYRYILSINI 60

Query: 729 GDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEH 783
            D T  +WVTLF   AE ILG++A+E+ E  E+         +KALF +Y+FRLR K E 
Sbjct: 61  SDHTGQIWVTLFNEAAEEILGMSAEELMELKEEDDNEFEKIFQKALFREYVFRLRVKEET 120

Query: 784 YN 785
           YN
Sbjct: 121 YN 122

This domain is found at the C terminal of replication factor A. Replication factor A (RPA) binds single-stranded DNA and is involved in replication, repair, and recombination of DNA. Length = 146

>gnl|CDD|239921 cd04475, RPA1_DBD_B, RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

 Score =  130 bits (328), Expect = 1e-35
 Identities = 51/101 (50%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 59  NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 118
            +DV+GV      ++++T K+  +   KR+ITLVD+S  SV +TLWG++AE FD S  PV
Sbjct: 1   IVDVIGVVKSVGPVTTITTKSTGRELDKREITLVDESGHSVELTLWGEQAELFDGSENPV 60

Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
           IA+K  +VSEF  GK+LS   SS + +NPDIPE HKL+GW+
Sbjct: 61  IAIKGVKVSEFN-GKSLSTGSSSTIIINPDIPEAHKLRGWY 100

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functionally. Antibodies to hRPA do not cross-react with ScRPA, and null mutations in the ScRPA subunits are not complemented by corresponding human genes. Also, ScRPA cannot support Simian virus 40 (SV40) DNA replication in vitro, whereas human RPA can. Length = 101

>gnl|CDD|239921 cd04475, RPA1_DBD_B, RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

 Score = 95.3 bits (238), Expect = 1e-23
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query: 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 635
            +DV+GV      ++++T K+  +   KR+ITLVD+S  SV +TLWG++AE FD S  PV
Sbjct: 1   IVDVIGVVKSVGPVTTITTKSTGRELDKREITLVDESGHSVELTLWGEQAELFDGSENPV 60

Query: 636 IAVKAARVSEFQG 648
           IA+K  +VSEF G
Sbjct: 61  IAIKGVKVSEFNG 73

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functionally. Antibodies to hRPA do not cross-react with ScRPA, and null mutations in the ScRPA subunits are not complemented by corresponding human genes. Also, ScRPA cannot support Simian virus 40 (SV40) DNA replication in vitro, whereas human RPA can. Length = 101

>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed

 Score = 87.8 bits (218), Expect = 6e-18
 Identities = 64/323 (19%), Positives = 132/323 (40%), Gaps = 32/323 (9%)

Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
            +K R+   +  RE      + ++  I+L D +G +R + + ++     ++ E D    I
Sbjct: 295 DVKGRIIAISDKREVERDDRTAEVQDIELADGTGRVRVSFWGEKAKILENLKEGD-AVKI 353

Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
            NC ++             +++  +S+ +I   +DE  +   ++     +K I  +  D+
Sbjct: 354 ENCKVRTYYDNEG--EKRVDLNAGYSSEII---KDESISFEEIEEKIYKIKDILNLEEDD 408

Query: 576 -NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP 634
            +I V+   ++   ++    +++      R+I L D +  S+ +TLW  +AE  +     
Sbjct: 409 NDITVIARVVEDYPVNEFE-RSDGSKGKVRNIELADGT-GSIRLTLWDDDAEI-EIKEGD 465

Query: 635 VIAVKAARVSEFQGNLLLMR------EIQDQQLGMGDKADYCS---------VRGIIQVF 679
            I +    V E    L L        EI  +   +     + +         +RG +   
Sbjct: 466 AIKILHPYVKENGDYLDLSIGRYGRIEINPEGEIIKSNRKFIADLEEDDTVEIRGTVVDI 525

Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKC-NKEFNTFTYRLILPVMIGDWTNSVWVT 738
           R        CP+  C K+V ++ +G Y CE C   E N     L+L   + D T ++   
Sbjct: 526 RKQKIILYLCPN--CRKRV-EEVDGEYICEFCGEVEPN---ELLMLNFTLDDGTGTINCR 579

Query: 739 LFQNEAESILGVTAQEVGESTED 761
            +    E +LG++ +E+ E   +
Sbjct: 580 FYGKNVEKLLGMSKEELKELNLE 602

Length = 637

>gnl|CDD|224515 COG1599, RFA1, Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [DNA replication, recombination, and repair]

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 24/194 (12%)

Query: 458 KARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN 517
           KARV   + I+ ++N  G  K+FS +L DE  E    +F D      D  +   VY I  
Sbjct: 173 KARVVVGSEIKTFDNQGGESKVFSNELEDE--ERGVIVFTDW-----DPSQDGDVYRIEG 225

Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
             +K  NK+    N   E+       V              +  FV             +
Sbjct: 226 ARVKTKNKQP-EENLAEELVLRVEVRV-------AIEKAEREE-FVD----EVKESVSLV 272

Query: 578 DVLGVCIDAAELSSVT--GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 635
           +  G  +D   +       +        +DI L D     + +TLWG +A     + + V
Sbjct: 273 EADGAVVDVTRVPECERVVRKGGCKGHGKDIGLDD-LTGKIRVTLWG-DATEVLINEESV 330

Query: 636 IAVKAARVSEFQGN 649
            A+K   V +  G 
Sbjct: 331 EALKGINVEDASGI 344

Length = 407

>gnl|CDD|239923 cd04477, RPA1N, RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70)

 Score = 61.8 bits (151), Expect = 8e-12
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 6/62 (9%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DGV     AMLATQLN ++  G L   +I+++KR+I + +       + +LIIL+L +
Sbjct: 42  LSDGVYYV-QAMLATQLNPLVESGQLQRGSIIRLKRFICNVIK-----GKRILIILDLEV 95

Query: 385 IK 386
           ++
Sbjct: 96  VQ 97

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C. Length = 97

>gnl|CDD|239926 cd04480, RPA1_DBD_A_like, RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 456 TIKARVTNKTPIREWNNARGSGKLFSID--LLDESGE-IRATMFNDECNRFHDMIEKDKV 512
            I  RV     +R W+    +    S++  L+DE G  I AT+      +F  ++++ K 
Sbjct: 1   KICVRV-----LRLWD-VYNNASGESLEMVLVDEKGNRIHATIPKRLAAKFRPLLKEGKW 54

Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
           Y ISN  + P    +   ++ Y++ F   T V
Sbjct: 55  YTISNFEVAPNTGSYRPTDHPYKIKFMSDTVV 86

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Length = 86

>gnl|CDD|202872 pfam04057, Rep-A_N, Replication factor-A protein 1, N-terminal domain

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 5/63 (7%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG N +S AMLATQLN ++  G L   +IVQ+ RY V+ +  G    R VLIILEL +
Sbjct: 42  LSDGKNKSS-AMLATQLNPLVISGKLQNGSIVQLTRYTVNDIKDG----RRVLIILELEV 96

Query: 385 IKP 387
           +K 
Sbjct: 97  LKS 99

Length = 99

>gnl|CDD|239927 cd04481, RPA1_DBD_B_like, RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 61  DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS------ 114
           DV+GV +D   L  +          K D  + D S   +  TLWG+ AE FDA       
Sbjct: 1   DVIGVIVDVGPLEELPPVNKPS--RKLDFEIRDLSDERLKCTLWGEYAEEFDAKFQSAGN 58

Query: 115 NKPVIAV-KAARVSEFQGGKTLSLSMS-SVLSLNPDIPE 151
            +PV+AV +  ++ E++G K+LS S   S + +NPDIPE
Sbjct: 59  GEPVVAVLRFWKIKEYKGPKSLSNSFGASKVYINPDIPE 97

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Length = 106

>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed

 Score = 58.5 bits (142), Expect = 1e-08
 Identities = 52/281 (18%), Positives = 111/281 (39%), Gaps = 51/281 (18%)

Query: 18  EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE-NIDVLGVCIDAAELSSVT 76
           +++  +S+ +I   +DE  +   ++     +K I  +  D+ +I V+   ++   ++   
Sbjct: 371 DLNAGYSSEII---KDESISFEEIEEKIYKIKDILNLEEDDNDITVIARVVEDYPVNEFE 427

Query: 77  GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLS 136
            +++      R+I L D +  S+ +TLW  +AE  +      I +    V E      LS
Sbjct: 428 -RSDGSKGKVRNIELADGT-GSIRLTLWDDDAEI-EIKEGDAIKILHPYVKENGDYLDLS 484

Query: 137 LSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQL 196
           +     + +NP+             ++N +F                    + ++++   
Sbjct: 485 IGRYGRIEINPE---------GEIIKSNRKF--------------------IADLEEDDT 515

Query: 197 GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKC-NKEFNTFTY 255
                     +RG +   R        CP+  C K+V ++ +G Y CE C   E N    
Sbjct: 516 VE--------IRGTVVDIRKQKIILYLCPN--CRKRV-EEVDGEYICEFCGEVEPN---E 561

Query: 256 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
            L+L   + D T ++    +    E +LG++ +E+ E   +
Sbjct: 562 LLMLNFTLDDGTGTINCRFYGKNVEKLLGMSKEELKELNLE 602

Length = 637

>gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
            T+  RVT+          R  GK+  + L D +G I+  +F +E  +    +++  V  
Sbjct: 1   VTVAGRVTSVR--------RSGGKVAFLTLRDGTGSIQVVLFKEEAEKLAKKLKEGDVVL 52

Query: 515 IS 516
           ++
Sbjct: 53  VT 54

This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. Length = 75

>gnl|CDD|239927 cd04481, RPA1_DBD_B_like, RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS------ 631
           DV+GV +D   L  +          K D  + D S   +  TLWG+ AE FDA       
Sbjct: 1   DVIGVIVDVGPLEELPPVNKPS--RKLDFEIRDLSDERLKCTLWGEYAEEFDAKFQSAGN 58

Query: 632 NKPVIAV-KAARVSEFQGNLLLMREI 656
            +PV+AV +  ++ E++G   L    
Sbjct: 59  GEPVVAVLRFWKIKEYKGPKSLSNSF 84

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Length = 106

>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed

 Score = 48.9 bits (117), Expect = 8e-06
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 15/185 (8%)

Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDECNR 502
            I  +   Q    I  R+   + I+ +    GS GKL +I + D +G IR T++ND    
Sbjct: 65  KISDIEEGQINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGTIRLTLWNDNAKL 124

Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
               +++  V  I N   +         NND E++    T +    + +    P +K  +
Sbjct: 125 LKG-LKEGDVIKIENARSR-------KWNNDVELNSGSETRIDKLEKYDESRYPIIKENY 176

Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
                I E+ P+ +  + G    A  +   T + +      +   L D +  S+ +TLW 
Sbjct: 177 ----DIPELEPNLSATIEGEVTKAYPIKEFT-RKDGSEGKLKSFILKDDT-GSIRVTLWN 230

Query: 623 KEAET 627
              + 
Sbjct: 231 DLTDI 235

Length = 637

>gnl|CDD|239937 cd04491, SoSSB_OBF, SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
           +++ +V + +  RE+      GK+ S  + DE+G IR T+++++     D +E   V  I
Sbjct: 1   SVEGKVLSISEPREFTRDGSEGKVQSGLVGDETGTIRFTLWDEKAA---DDLEPGDVVRI 57

Query: 516 SNCTLK 521
            N  ++
Sbjct: 58  ENAYVR 63

SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating the DNA helicase activity of MCM. Length = 82

>gnl|CDD|145722 pfam02721, DUF223, Domain of unknown function DUF223

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 484 LLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
           L DE+G +I AT+       + D I + +   I+   ++P +  +   +++Y + F   T
Sbjct: 4   LADENGDKIEATIRRRLAAFYADRISEGEWKTITTFVVRPNSGSYRITSHEYGILFMDQT 63

Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
            V   +  E      +     P   I E + D+N+
Sbjct: 64  VVTKSDTRE----TVLFNNLTPFDYIIEDTVDKNV 94

Length = 95

>gnl|CDD|169427 PRK08402, PRK08402, replication factor A; Reviewed

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 68/263 (25%), Positives = 105/263 (39%), Gaps = 58/263 (22%)

Query: 46  VPLKTIAEISPD-ENIDVLGVCIDAAELSSVTGKTNQKTYMKRD---------ITLVDQS 95
            PL  I+++ P    ++++G          V  K   + Y K+D         I   D  
Sbjct: 60  APLMHISDLVPGMRGVNIVG---------RVLRKYPPREYTKKDGSTGRVASLIIYDDTG 110

Query: 96  QASVTMTLW-GKEAETFDASN-KPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPEC 152
           +A V   LW  K A+ ++  N   VI V  A+V E   G   L ++  + + LNPD P  
Sbjct: 111 RARVV--LWDAKVAKYYNKINVGDVIKVIDAQVRESLSGLPELHINFRARIILNPDDPRV 168

Query: 153 HKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGII- 211
            ++            E V                     +  +L  G++  +  VRG I 
Sbjct: 169 EEI---------PPLEEVRSYN-------------YTRKKIGELEGGER--FVEVRGTIA 204

Query: 212 QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRC-EKCNKEFNTFTYRLILPVMIGDWTNS 269
           +V+R     Y ACP  +C +KV  D     + C E    E    T   IL   + D T  
Sbjct: 205 KVYR--VLVYDACP--ECRRKVDYDPATDTWICPEHGEVEPIKIT---ILDFGLDDGTGY 257

Query: 270 VWVTLFQNEAESILGVTAQEVGE 292
           + VTLF ++A  +LGV  +E+ E
Sbjct: 258 IRVTLFGDDAAELLGVEPEEIAE 280

Length = 355

>gnl|CDD|169427 PRK08402, PRK08402, replication factor A; Reviewed

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 12/107 (11%)

Query: 654 REIQDQQLGMGDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRC-EK 710
              +  +L  G++  +  VRG I +V+R     Y ACP  +C +KV  D     + C E 
Sbjct: 183 TRKKIGELEGGER--FVEVRGTIAKVYR--VLVYDACP--ECRRKVDYDPATDTWICPEH 236

Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
              E    T   IL   + D T  + VTLF ++A  +LGV  +E+ E
Sbjct: 237 GEVEPIKIT---ILDFGLDDGTGYIRVTLFGDDAAELLGVEPEEIAE 280

Length = 355

>gnl|CDD|239920 cd04474, RPA1_DBD_A, RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 5   PANKKFSSINNDYEMSFTHSTTVIP 29
            ANKKF+++ NDYE++F   T++I 
Sbjct: 80  VANKKFNTLKNDYEITFNRDTSIIE 104

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functionally. Antibodies to hRPA do not cross-react with ScRPA, and null mutations in the ScRPA subunits are not complemented by corresponding human genes. Also, ScRPA cannot support Simian virus 40 (SV40) DNA replication in vitro, whereas human RPA can. Length = 104

>gnl|CDD|216524 pfam01485, IBR, IBR domain

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 210 IIQVFRGSNTTYKACPSQDCNKKVI--DQNNGMYRCEKCNKEF 250
            ++ +  S    K CP+ DC   +   D  +    C KC  EF
Sbjct: 7   SLKKYVESPKNLKWCPTPDCGNIIEKTDGGSQNVTCSKCGTEF 49

The IBR (In Between Ring fingers) domain is often found to occur between pairs of ring fingers (pfam00097). This domain has also been called the C6HC domain and DRIL (for double RING finger linked) domain. Proteins that contain two Ring fingers and an IBR domain (these proteins are also termed RBR family proteins) are thought to exist in all eukaryotic organisms. RBR family members play roles in protein quality control and can indirectly regulate transcription. Evidence suggests that RBR proteins are often parts of cullin-containing ubiquitin ligase complexes. The ubiquitin ligase Parkin is an RBR family protein whose mutations are involved in forms of familial Parkinson's disease. Length = 63

>gnl|CDD|216524 pfam01485, IBR, IBR domain

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 675 IIQVFRGSNTTYKACPSQDCNKKVI--DQNNGMYRCEKCNKEF 715
            ++ +  S    K CP+ DC   +   D  +    C KC  EF
Sbjct: 7   SLKKYVESPKNLKWCPTPDCGNIIEKTDGGSQNVTCSKCGTEF 49

The IBR (In Between Ring fingers) domain is often found to occur between pairs of ring fingers (pfam00097). This domain has also been called the C6HC domain and DRIL (for double RING finger linked) domain. Proteins that contain two Ring fingers and an IBR domain (these proteins are also termed RBR family proteins) are thought to exist in all eukaryotic organisms. RBR family members play roles in protein quality control and can indirectly regulate transcription. Evidence suggests that RBR proteins are often parts of cullin-containing ubiquitin ligase complexes. The ubiquitin ligase Parkin is an RBR family protein whose mutations are involved in forms of familial Parkinson's disease. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	786
TIGR00617	608	rpa1 replication factor-a protein 1 (rpa1). This f	100.0
PRK12366	637	replication factor A; Reviewed	100.0
TIGR00617	608	rpa1 replication factor-a protein 1 (rpa1). This f	100.0
PRK12366	637	replication factor A; Reviewed	100.0
PRK08402	355	replication factor A; Reviewed	100.0
PRK14699	484	replication factor A; Provisional	100.0
PRK08402	355	replication factor A; Reviewed	100.0
PRK07218	423	replication factor A; Provisional	100.0
PRK06386	358	replication factor A; Reviewed	100.0
PRK07211	485	replication factor A; Reviewed	100.0
PRK15491	374	replication factor A; Provisional	99.97
PRK07211	485	replication factor A; Reviewed	99.97
PRK15491	374	replication factor A; Provisional	99.96
PF08646	146	Rep_fac-A_C: Replication factor-A C terminal domai	99.96
cd04476	166	RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor	99.96
PF08646	146	Rep_fac-A_C: Replication factor-A C terminal domai	99.95
cd04476	166	RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor	99.95
PRK14699	484	replication factor A; Provisional	99.94
cd04474	104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	99.93
cd04475	101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	99.87
PRK07218	423	replication factor A; Provisional	99.86
PRK06386	358	replication factor A; Reviewed	99.81
cd04481	106	RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc	99.81
PRK07217	311	replication factor A; Reviewed	99.73
cd04480	86	RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of unc	99.65
PF02721	95	DUF223: Domain of unknown function DUF223; InterPr	99.58
cd04475	101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	99.49
PRK07217	311	replication factor A; Reviewed	99.42
PF04057	101	Rep-A_N: Replication factor-A protein 1, N-termina	99.33
cd04477	97	RPA1N RPA1N: A subfamily of OB folds corresponding	99.28
cd04481	106	RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc	99.27
cd04497	138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	99.2
COG1599	407	RFA1 Single-stranded DNA-binding replication prote	99.08
cd04491	82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	98.97
PRK06461	129	single-stranded DNA-binding protein; Reviewed	98.95
cd04497	138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	98.94
cd04491	82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	98.94
PRK06461	129	single-stranded DNA-binding protein; Reviewed	98.87
KOG0851|consensus	246		98.85
COG1599	407	RFA1 Single-stranded DNA-binding replication prote	98.73
PF01336	75	tRNA_anti-codon: OB-fold nucleic acid binding doma	97.77
PF02765	146	POT1: Telomeric single stranded DNA binding POT1/C	97.77
cd04474	104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	97.66
KOG3416|consensus	134		97.36
PF02765	146	POT1: Telomeric single stranded DNA binding POT1/C	97.3
PF02721	95	DUF223: Domain of unknown function DUF223; InterPr	97.24
cd03524	75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	96.42
PF01336	75	tRNA_anti-codon: OB-fold nucleic acid binding doma	96.18
KOG3416|consensus	134		95.95
cd04483	92	hOBFC1_like hOBFC1_like: A subfamily of OB folds s	95.77
cd04483	92	hOBFC1_like hOBFC1_like: A subfamily of OB folds s	95.72
cd03524	75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	95.64
cd04478	95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	94.91
cd04488	75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	94.69
cd04485	84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	94.35
PF15072	86	DUF4539: Domain of unknown function (DUF4539)	94.14
cd04478	95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	94.08
PF11325	84	DUF3127: Domain of unknown function (DUF3127); Int	93.27
cd04489	78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	93.07
cd04490	79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	92.25
cd04490	79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	92.23
cd04485	84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	91.54
PRK13480	314	3'-5' exoribonuclease YhaM; Provisional	91.4
PRK13480	314	3'-5' exoribonuclease YhaM; Provisional	91.07
cd04492	83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	90.66
PTZ00401	550	aspartyl-tRNA synthetase; Provisional	89.79
PRK05813	219	single-stranded DNA-binding protein; Provisional	89.31
PRK06751	173	single-stranded DNA-binding protein; Provisional	88.94
KOG4757|consensus	522		88.32
PF15489	1144	CTC1: CST, telomere maintenance, complex subunit C	88.14
KOG0851|consensus	246		87.93
PF11325	84	DUF3127: Domain of unknown function (DUF3127); Int	87.83
KOG4757|consensus	522		87.59
PF14951	389	DUF4503: Domain of unknown function (DUF4503)	87.36
PF14951	389	DUF4503: Domain of unknown function (DUF4503)	87.27
cd04492	83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	86.12
PRK08182	148	single-stranded DNA-binding protein; Provisional	86.06
PRK02801	101	primosomal replication protein N; Provisional	85.99
PRK05733	172	single-stranded DNA-binding protein; Provisional	85.81
PRK07274	131	single-stranded DNA-binding protein; Provisional	85.75
cd04489	78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	85.64
PRK07373	449	DNA polymerase III subunit alpha; Reviewed	85.51
PRK07275	162	single-stranded DNA-binding protein; Provisional	85.21
cd04320	102	AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r	85.1
PF02760	170	HIN: HIN-200/IF120x domain; InterPro: IPR004021 Th	84.67
PRK06752	112	single-stranded DNA-binding protein; Validated	83.91
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	83.61
cd04488	75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	83.56
cd04100	85	Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant	83.5
COG5235	258	RFA2 Single-stranded DNA-binding replication prote	83.46
PRK09010	177	single-stranded DNA-binding protein; Provisional	83.35
PLN02850	530	aspartate-tRNA ligase	83.16
cd04322	108	LysRS_N LysRS_N: N-terminal, anticodon recognition	82.51
cd04495	100	BRCA2DBD_OB3 BRCA2DBD_OB3: A subfamily of OB folds	82.46
COG5235	258	RFA2 Single-stranded DNA-binding replication prote	82.39
PRK06863	168	single-stranded DNA-binding protein; Provisional	81.97
cd04480	86	RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of unc	81.83
PRK07459	121	single-stranded DNA-binding protein; Provisional	81.72
cd04323	84	AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a	81.56
PRK13732	175	single-stranded DNA-binding protein; Provisional	81.46
PRK07772	186	single-stranded DNA-binding protein; Provisional	81.37
PF09104	143	BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide	81.26
PRK06293	161	single-stranded DNA-binding protein; Provisional	81.01
PRK08763	164	single-stranded DNA-binding protein; Provisional	80.86
PRK08486	182	single-stranded DNA-binding protein; Provisional	80.67
PF00436	104	SSB: Single-strand binding protein family; InterPr	80.29

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)

Probab=100.00  E-value=1.5e-92  Score=817.13  Aligned_cols=461  Identities=47%  Similarity=0.803  Sum_probs=404.3

Q ss_pred             ccCccccCCCcceeeEEEeecccccccccCCcccceEEEEceeEeeee-ecCCCCccEEEEEEeeeeeccCcccCccccC
Q psy15132        319 YNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGV-SSGSATNRSVLIILELNIIKPGTEIGFKIGN  397 (786)
Q Consensus       319 y~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L~~~~iikl~~~~~~~~-~~~~~~~~~~~ii~~~~v~~~~~~~~~~ig~  397 (786)
                      -.+|++||||.|. .++||++|||+++++|.|++|+||||++|+++.+ ++|    |++|||+++||+.+..+...+||+
T Consensus        42 ~ryr~~lsDg~~~-~~~ml~t~~n~~~~~~~l~~~~iv~l~~~~~~~~~~~~----~~~lii~~~ev~~~~~~~~~~ig~  116 (608)
T TIGR00617        42 RRYRIVISDGIYY-SKAMLATQLNPLVREGELQEGTIIRLTKFEVNTIGKDG----RKVLIVYELEVVKPELKVRDKIGN  116 (608)
T ss_pred             ceEEEEEECchHH-HHHHHHHHHHHHHHhCCccCCCEEEEeEEEEeEEccCC----cEEEEEEeeEEeecccccccccCC
Confidence            4678999999995 5899999999999999999999999999999999 543    799999999999987666678999


Q ss_pred             CccCCCCCCCCC--CCCCCCC--CC--CC----CCC--CCCCCcC------CCCCCC-CCCCceeeecccCCCCCceEEE
Q psy15132        398 PQPLNTNTDNSS--TQQTPAA--TN--TN----GSN--GVHNNVA------IPRQAS-APVVQTHPIVSLSPYQNKWTIK  458 (786)
Q Consensus       398 p~~~~~~~~~~~--~~~~~~~--~~--~~----~~~--~~~~~~~------~~~~~~-~~~~~~~~I~~L~p~~~~w~I~  458 (786)
                      |+++......+.  +..++.|  ..  .+    .+.  .......      .++.++ .+..+++||++|+||+++|+|+
T Consensus       117 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pI~~L~py~~~wtIk  196 (608)
T TIGR00617       117 PVTYEKYLDSWHEEQVLASKPATNPANPPNAKAPKNEVASYNNAANPERGNAPPAPNSGSTRRVMPIASLSPYQNKWTIK  196 (608)
T ss_pred             CccccccccccCccccccccccccCCCCCCccCCCcccccccCCCCcccCCCCCCccccCCcceEEHHHCCCCCCceEEE
Confidence            998865200000  0000100  00  00    000  0000000      001111 1234699999999999999999


Q ss_pred             EEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceEEEE
Q psy15132        459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF  538 (786)
Q Consensus       459 ~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~yei~f  538 (786)
                      |||++|+++|.|++++|+|++|+|+|+|++|+|+||+|++.+++|+++|++|+||+|++|+|++++++|++++|+|||+|
T Consensus       197 aRV~~Ks~ir~~~~~~gegkvfsv~L~Degg~Irat~f~~~~dkf~~~l~eG~VY~Is~~~Vk~an~~y~~~~~~yei~f  276 (608)
T TIGR00617       197 ARVTNKSEIRTWSNARGEGKLFNVELLDESGEIRATAFNEQADKFYDIIQEGKVYYISKGSLKPANKQFTNLGNDYEMTL  276 (608)
T ss_pred             EEEEeccccceecCCCCCceeeEEEEecCCCeEEEEECchHHHHHhhhcccCCEEEECceEEEEccccccCCCCCEEEEE
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             ccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEE
Q psy15132        539 THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM  618 (786)
Q Consensus       539 ~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~  618 (786)
                      +.+|.|++|+|..  ++|.+.|+|++|+||.+...+..|||||+|++|+++.++++|.+|++..+|+|+|+|+||.+|+|
T Consensus       277 ~~~T~I~~~~d~~--~iP~~~~~f~~i~dI~~~~~~~~VDVIGvV~~v~~~~~i~~k~~g~~~~kR~i~L~D~sg~sI~v  354 (608)
T TIGR00617       277 DRDTVIEECEDET--AIPKIQFNFVKIDDIGGYEGNSLVDVIGIVQSVSPTQTITSRKNNKEFPKRDITLVDDSGKSVRV  354 (608)
T ss_pred             CCCeEEEECCCcc--cCCcccccceEHHHhhhhcCCCCccEEEEEeEecCceEEEEcCCCCeeeeEEEEEEeCCCCEEEE
Confidence            9999999998876  79999999999999999888889999999999999999998888999999999999999999999


Q ss_pred             EEeccccccccCCCCCEEEEEeEEEeecCCc-c-----------------------------------------------
Q psy15132        619 TLWGKEAETFDASNKPVIAVKAARVSEFQGN-L-----------------------------------------------  650 (786)
Q Consensus       619 tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~-L-----------------------------------------------  650 (786)
                      ||||++|+.|+...++||+|++++|++|+|+ |                                               
T Consensus       355 TLWG~~A~~~~~~~~~Vva~kg~~V~~f~g~sLs~~~~S~i~iNPdipEa~~L~~w~~~~g~~~~~~s~~~~~~~~~~~~  434 (608)
T TIGR00617       355 TLWGDDATKFDVSVQPVIAIKGVRVSDFGGKSLSTGGSSTIIVNPDIPEAEKLKGWYDNEGKGTMASSISDMMSGRVGGS  434 (608)
T ss_pred             EEEhhhhhhcCCCCCCEEEEEeEEEEecCCceEeccCCceEEECCCcHHHHHHHHHHHhcCCCccceeehhccccccCCc
Confidence            9999999999999999999999999999887 5                                               


Q ss_pred             ----ccHHhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEE
Q psy15132        651 ----LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV  726 (786)
Q Consensus       651 ----~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~  726 (786)
                          +||+|++++++|.+++++||.|+|+|+.|+.++|||+|||++.|+|||++..+|.|+|++|++.+++|.|||+|++
T Consensus       435 ~~~~ktI~ei~~~~lg~~~k~~~f~v~atI~~Ik~d~~~Y~ACp~~~CnKKV~~~~~g~~~CekC~~~~~~~~~RYil~~  514 (608)
T TIGR00617       435 NAERKTIAEIQAENLGKSDKPDYFSVKATISYLKPDNALYRACPSEDCNKKVVDQGDGTYRCEKCNKNFAEFKYRYILQI  514 (608)
T ss_pred             ccccccHHHHhhhccCCCCCCcEEEEEEEEEEEecCCeEeccCChhhCCCccccCCCCCEECCCCCCCCCCccEEEEEEE
Confidence                3567777778888899999999999999999999999999777999999877799999999999999999999999


Q ss_pred             EEEecCCcEEEEEehhhHHHHhCCChHHHhccccChH-----HHHHhcCCeEEEEEEEEeeccCC
Q psy15132        727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK  786 (786)
Q Consensus       727 ~i~D~Tg~~~~~~F~~~ae~llG~sa~el~~~~~~~~-----~~~~~~~k~~~f~v~~k~~~y~~  786 (786)
                      .|+|+||++|+++|++.|++|||+||+||.+++++++     +|+++.|++|+|+||+|+|+|||
T Consensus       515 ~i~D~Tg~~~~t~F~~~ae~llG~sA~eL~~l~~~~~~~~~~i~~~~~~~~~~f~~~~k~e~yn~  579 (608)
T TIGR00617       515 SISDETGQLWVTAFNDQAEQILGKSAAELGELKEEDPDEFEAIFQEAQFVPYIFRLRVKQDTYND  579 (608)
T ss_pred             EEEeCCCCEEEEEEhHHHHHHcCCCHHHHHHHHhcCHHHHHHHHHHhhCcEEEEEEEEEEcccCC
Confidence            9999999999999999999999999999999988764     88999999999999999999997

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK12366 replication factor A; Reviewed

Probab=100.00  E-value=3e-67  Score=610.67  Aligned_cols=539  Identities=19%  Similarity=0.319  Sum_probs=414.4

Q ss_pred             ecCccchhccCCC-CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc-CCCCcEEEEE
Q psy15132         45 FVPLKTIAEISPD-ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAVK  122 (786)
Q Consensus        45 f~~~~~i~~~~~~-~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~Vi~i~  122 (786)
                      +.+|++|.   ++ ..+++.|.|++++++++++.+. |.+...+++.|.|+|| +|++|+|++.|..++ ...|.|+-|.
T Consensus        63 ~~~I~dl~---p~~~~v~i~arV~~~~~~r~~~~~~-G~eGkv~~~~v~DetG-~Ir~t~W~~~~~~~~~le~G~v~~i~  137 (637)
T PRK12366         63 DFKISDIE---EGQINVEITGRIIEISNIKTFTRKD-GSTGKLANITIADNTG-TIRLTLWNDNAKLLKGLKEGDVIKIE  137 (637)
T ss_pred             eeEHHHCc---CCCcceEEEEEEEEccCCeEEECCC-CCccEEEEEEEEcCCC-EEEEEEEchhhhhhccCCCCCEEEEe
Confidence            44566664   34 4699999999999999998764 6677889999999999 899999999987654 3789999999


Q ss_pred             eEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhccCCCceeeeccccCCCCCCCcchhhhHHHHHhhcCCCCCCC
Q psy15132        123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKA  202 (786)
Q Consensus       123 ~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~~~~~~~~s~~~~~~~~~~~~~~~ti~ei~~~~l~~~~~~  202 (786)
                      ++.++.|+|..+|+++..|.|...++..+.             ..+.+.            ....|++|.        .+
T Consensus       138 ~~~v~~~~~~~el~~~~~t~I~~~~~~d~~-------------~i~~~~------------~~~~I~el~--------~g  184 (637)
T PRK12366        138 NARSRKWNNDVELNSGSETRIDKLEKYDES-------------RYPIIK------------ENYDIPELE--------PN  184 (637)
T ss_pred             ccEecccCCceEEEcCCcceEEEccccccc-------------cCCccc------------ccccccccC--------CC
Confidence            999999999999999988888765421000             000000            011233432        13


Q ss_pred             cEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHH
Q psy15132        203 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI  282 (786)
Q Consensus       203 ~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~i  282 (786)
                      .+..|.|.|..+..-.- +        .+|     +|              ......++.|.|.||++++++||+.|+..
T Consensus       185 ~~v~v~G~V~~~~~~~~-f--------~rk-----dg--------------~~~~~r~~~l~D~TG~irvTlW~~~a~~~  236 (637)
T PRK12366        185 LSATIEGEVTKAYPIKE-F--------TRK-----DG--------------SEGKLKSFILKDDTGSIRVTLWNDLTDIE  236 (637)
T ss_pred             CeEEEEEEEEEccCcEE-E--------EEc-----CC--------------CeeEEEEEEEEcCCCcEEEEEEChhhccc
Confidence            37888999888753210 1        011     11              11234678899999999999999987320


Q ss_pred             hCCChhhhhccCCChHHHHHhcCCEEEEEEeeecccccCccccCCCcceeeEEEeecccccccccCCcccceEEEEceeE
Q psy15132        283 LGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYI  362 (786)
Q Consensus       283 lg~sa~el~~~~e~~~~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L~~~~iikl~~~~  362 (786)
                                                                                         |..|++|+|+.|.
T Consensus       237 -------------------------------------------------------------------~~~g~vv~i~g~~  249 (637)
T PRK12366        237 -------------------------------------------------------------------VNKGDIVRVKGYV  249 (637)
T ss_pred             -------------------------------------------------------------------CCCCCEEEEEeEE
Confidence                                                                               2234444444332


Q ss_pred             eeeeecCCCCccEEEEEEeeeeeccCcccCccccCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCce
Q psy15132        363 VSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT  442 (786)
Q Consensus       363 ~~~~~~~~~~~~~~~ii~~~~v~~~~~~~~~~ig~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (786)
                      ...-. |           .+|+-...   ...|..+....                                   ...++
T Consensus       250 ~~~~~-~-----------~~el~~~~---~~~i~~~~~~~-----------------------------------~~~~~  279 (637)
T PRK12366        250 KQGYR-T-----------GLEISANN---IEILEKLEKEE-----------------------------------KELEI  279 (637)
T ss_pred             ecCcC-C-----------ceEEEeCC---ceeeccccccc-----------------------------------cccCc
Confidence            22110 0           01110000   00111110000                                   01246


Q ss_pred             eeecccCCC-CC-ceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132        443 HPIVSLSPY-QN-KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       443 ~~I~~L~p~-~~-~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V  520 (786)
                      +||++|+|| ++ +|+|+|||+.|+++|+|++.+|+|++|+++|.|++|+|++|+|++.+++|++ |++|+||+|++++|
T Consensus       280 ~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG~IR~t~w~~~~d~~~~-l~~G~vy~is~~~v  358 (637)
T PRK12366        280 VNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTGRVRVSFWGEKAKILEN-LKEGDAVKIENCKV  358 (637)
T ss_pred             eeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCCeEEEEEeCchhhhhcc-cCCCCEEEEecCEE
Confidence            899999999 55 8999999999999999999999999999999999999999999999999997 59999999999999


Q ss_pred             eccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccC-CCceeeEEEEEEEcccceeEEeecCCc
Q psy15132        521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS-PDENIDVLGVCIDAAELSSVTGKTNQK  599 (786)
Q Consensus       521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~-~~~~vDViGvV~~V~~~~~i~~k~~g~  599 (786)
                      +..+..  ...+.|||+++..|.|.+ +++.  .+|.+.++|++|.+|.+.. .+..|||+|+|++++++.+|+++ +|+
T Consensus       359 k~y~~~--~~~~~~El~~~~~s~I~~-d~~~--~~p~~~~~~~~i~dI~~~~~~~~~VdVig~V~~v~~~~~i~~k-~G~  432 (637)
T PRK12366        359 RTYYDN--EGEKRVDLNAGYSSEIIK-DESI--SFEEIEEKIYKIKDILNLEEDDNDITVIARVVEDYPVNEFERS-DGS  432 (637)
T ss_pred             eecccc--CCCcCEEEEcCCceEEEe-ccCC--cccceeeccccHHHhhcccCCCcEEEEEEEEEEccCceEEEec-CCC
Confidence            843321  335789999999999998 4433  6899999999999999884 68899999999999999999876 599


Q ss_pred             eeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc--c-----------ccHHhHHhhc--CCCC
Q psy15132        600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN--L-----------LLMREIQDQQ--LGMG  664 (786)
Q Consensus       600 ~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~--L-----------~ti~e~~~~~--l~~~  664 (786)
                      +..+|+++|.|+|| +|++||||++|+ ++...|++|+|++++|++|+|+  |           ....+++...  +..-
T Consensus       433 ~~~~r~i~l~D~TG-~I~vtlWg~~a~-~~~~~G~vi~i~~~~V~~~~g~~~Ls~~~~s~i~~~p~~~el~~~~~~I~~i  510 (637)
T PRK12366        433 KGKVRNIELADGTG-SIRLTLWDDDAE-IEIKEGDAIKILHPYVKENGDYLDLSIGRYGRIEINPEGEIIKSNRKFIADL  510 (637)
T ss_pred             EeEEEEEEEEeCCC-EEEEEEeccccc-cCCCCCCEEEEEeeEEEeCCCeeEEEecCcceEEECCCCccccccccCHHHc
Confidence            99999999999999 999999999997 6778899999999999999996  4           1111111100  0001


Q ss_pred             CCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhH
Q psy15132        665 DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA  744 (786)
Q Consensus       665 ~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~a  744 (786)
                      ..++++.++|+|+.|+.++++|+|||  .|+|||.+ .+|.|+|++|++.  +|.|||+|++.|+|+||++|+++|++.|
T Consensus       511 ~~~~~~~v~g~i~~i~~~~~~y~aCp--~CnkKv~~-~~g~~~C~~c~~~--~p~~~~~l~~~i~D~TG~~~~t~f~e~a  585 (637)
T PRK12366        511 EEDDTVEIRGTVVDIRKQKIILYLCP--NCRKRVEE-VDGEYICEFCGEV--EPNELLMLNFTLDDGTGTINCRFYGKNV  585 (637)
T ss_pred             ccCCeEEEEEEEEEEeCCCEEEeccc--ccCeEeEc-CCCcEECCCCCCC--CCcEEEEEEEEEEcCCCCEEEEEEhHHh
Confidence            22456999999999999999999999  59999985 6789999999997  8899999999999999999999999999


Q ss_pred             HHHhCCChHHHhccccChHHHHHhcCCeEEEEEEEEee
Q psy15132        745 ESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLE  782 (786)
Q Consensus       745 e~llG~sa~el~~~~~~~~~~~~~~~k~~~f~v~~k~~  782 (786)
                      ++||||+|+||.+|.+  +.|++++|++|.|+++++++
T Consensus       586 e~l~G~sa~el~~l~~--~~l~~~~g~~~~~~~~~k~~  621 (637)
T PRK12366        586 EKLLGMSKEELKELNL--EALEDLLGEEVVFYGNVSFR  621 (637)
T ss_pred             HHHhCCCHHHHHHHHH--HHHHHhcCcEEEEEEEEeec
Confidence            9999999999999886  58888999999999999998

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)

Probab=100.00  E-value=1.7e-66  Score=600.50  Aligned_cols=340  Identities=43%  Similarity=0.757  Sum_probs=306.4

Q ss_pred             ccccccCCCcCCCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCC
Q psy15132          2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ   81 (786)
Q Consensus         2 ~v~~A~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g   81 (786)
                      .|++||++|++++|+|||+|+.+|.|++|.|+  .+||++.|+|++|++|.+.+.+.+|||||+|++|+++.+|++|.+|
T Consensus       257 ~Vk~an~~y~~~~~~yei~f~~~T~I~~~~d~--~~iP~~~~~f~~i~dI~~~~~~~~VDVIGvV~~v~~~~~i~~k~~g  334 (608)
T TIGR00617       257 SLKPANKQFTNLGNDYEMTLDRDTVIEECEDE--TAIPKIQFNFVKIDDIGGYEGNSLVDVIGIVQSVSPTQTITSRKNN  334 (608)
T ss_pred             EEEEccccccCCCCCEEEEECCCeEEEECCCc--ccCCcccccceEHHHhhhhcCCCCccEEEEEeEecCceEEEEcCCC
Confidence            47999999999999999999999999999764  4699999999999999998888899999999999999999988889


Q ss_pred             ceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhc
Q psy15132         82 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST  161 (786)
Q Consensus        82 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~  161 (786)
                      ++..||+|+|+|+||.+|+|||||++|.+|+...++||+|+++||++| |+++||++++|+|++|||+||+++|++||++
T Consensus       335 ~~~~kR~i~L~D~sg~sI~vTLWG~~A~~~~~~~~~Vva~kg~~V~~f-~g~sLs~~~~S~i~iNPdipEa~~L~~w~~~  413 (608)
T TIGR00617       335 KEFPKRDITLVDDSGKSVRVTLWGDDATKFDVSVQPVIAIKGVRVSDF-GGKSLSTGGSSTIIVNPDIPEAEKLKGWYDN  413 (608)
T ss_pred             CeeeeEEEEEEeCCCCEEEEEEEhhhhhhcCCCCCCEEEEEeEEEEec-CCceEeccCCceEEECCCcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999 6789999999999999999999999999998


Q ss_pred             cCC-CceeeeccccCCCCCCCcchhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCce
Q psy15132        162 QTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM  240 (786)
Q Consensus       162 ~~~-~~~~~~s~~~~~~~~~~~~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~  240 (786)
                      ++. ..+.+++...++..++...+++||+||++++++.+++++||+|+|+|++|+.++|||+|||++.|+|||.++++|.
T Consensus       414 ~g~~~~~~s~~~~~~~~~~~~~~~~ktI~ei~~~~lg~~~k~~~f~v~atI~~Ik~d~~~Y~ACp~~~CnKKV~~~~~g~  493 (608)
T TIGR00617       414 EGKGTMASSISDMMSGRVGGSNAERKTIAEIQAENLGKSDKPDYFSVKATISYLKPDNALYRACPSEDCNKKVVDQGDGT  493 (608)
T ss_pred             cCCCccceeehhccccccCCcccccccHHHHhhhccCCCCCCcEEEEEEEEEEEecCCeEeccCChhhCCCccccCCCCC
Confidence            874 2333443322211123356789999999999998899999999999999999999999999656999999777789


Q ss_pred             eecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccCCChH-----HHHHhcCCEEEEEEeee
Q psy15132        241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAK  315 (786)
Q Consensus       241 ~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~~-----~~~~~~~k~~~f~v~~k  315 (786)
                      |+|++|+++.++|.|||+|++.|+|+||++|+++||+.|++|||++|+||.++.++++     .|.++.|++|.|+||++
T Consensus       494 ~~CekC~~~~~~~~~RYil~~~i~D~Tg~~~~t~F~~~ae~llG~sA~eL~~l~~~~~~~~~~i~~~~~~~~~~f~~~~k  573 (608)
T TIGR00617       494 YRCEKCNKNFAEFKYRYILQISISDETGQLWVTAFNDQAEQILGKSAAELGELKEEDPDEFEAIFQEAQFVPYIFRLRVK  573 (608)
T ss_pred             EECCCCCCCCCCccEEEEEEEEEEeCCCCEEEEEEhHHHHHHcCCCHHHHHHHHhcCHHHHHHHHHHhhCcEEEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999876543     57889999999999999


Q ss_pred             cccccCccccCCCcceeeEEEeecccccccccCCc
Q psy15132        316 LEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTL  350 (786)
Q Consensus       316 ~e~y~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L  350 (786)
                      +|+|||+.++   ++   +++-+.++|+..|+..|
T Consensus       574 ~e~yn~e~r~---~~---~v~~~~~vd~~~e~~~L  602 (608)
T TIGR00617       574 QDTYNDESRQ---KY---TVMSVDPVNYRAEAKYL  602 (608)
T ss_pred             EcccCCEeeE---EE---EEEEeeeCCHHHHHHHH
Confidence            9999999887   44   68889999998877655

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK12366 replication factor A; Reviewed

Probab=100.00  E-value=4.2e-43  Score=408.57  Aligned_cols=264  Identities=20%  Similarity=0.352  Sum_probs=235.6

Q ss_pred             CCc--CCCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccC-CCCceEEEEEEEEeccceeEeeccCCceee
Q psy15132          9 KFS--SINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS-PDENIDVLGVCIDAAELSSVTGKTNQKTYM   85 (786)
Q Consensus         9 ~y~--~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~-~~~~vDViGvV~~v~~~~~i~~k~~g~~~~   85 (786)
                      +|+  .-++.|||+|+..|.|.+ ++  ...+|.+.|+|++|++|.+++ .+..|||+|+|++++|+++|++++ |++..
T Consensus       360 ~y~~~~~~~~~El~~~~~s~I~~-d~--~~~~p~~~~~~~~i~dI~~~~~~~~~VdVig~V~~v~~~~~i~~k~-G~~~~  435 (637)
T PRK12366        360 TYYDNEGEKRVDLNAGYSSEIIK-DE--SISFEEIEEKIYKIKDILNLEEDDNDITVIARVVEDYPVNEFERSD-GSKGK  435 (637)
T ss_pred             eccccCCCcCEEEEcCCceEEEe-cc--CCcccceeeccccHHHhhcccCCCcEEEEEEEEEEccCceEEEecC-CCEeE
Confidence            566  445789999999999998 43  256899999999999999874 688999999999999999998764 88899


Q ss_pred             EEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhccCCC
Q psy15132         86 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT  165 (786)
Q Consensus        86 kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~~~  165 (786)
                      +|+++|.|+|| +|++||||++|. +....+++|+|++++|++|+|.++||++++|+|.+||+.||   |+.        
T Consensus       436 ~r~i~l~D~TG-~I~vtlWg~~a~-~~~~~G~vi~i~~~~V~~~~g~~~Ls~~~~s~i~~~p~~~e---l~~--------  502 (637)
T PRK12366        436 VRNIELADGTG-SIRLTLWDDDAE-IEIKEGDAIKILHPYVKENGDYLDLSIGRYGRIEINPEGEI---IKS--------  502 (637)
T ss_pred             EEEEEEEeCCC-EEEEEEeccccc-cCCCCCCEEEEEeeEEEeCCCeeEEEecCcceEEECCCCcc---ccc--------
Confidence            99999999999 999999999997 56678999999999999998878999999999999999987   210        


Q ss_pred             ceeeeccccCCCCCCCcchhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeeccc
Q psy15132        166 RFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK  245 (786)
Q Consensus       166 ~~~~~s~~~~~~~~~~~~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~  245 (786)
                                        ++++|++|++        +++++++|+|.+|+.+++||+|||  .|||||.+ ++|.|+|++
T Consensus       503 ------------------~~~~I~~i~~--------~~~~~v~g~i~~i~~~~~~y~aCp--~CnkKv~~-~~g~~~C~~  553 (637)
T PRK12366        503 ------------------NRKFIADLEE--------DDTVEIRGTVVDIRKQKIILYLCP--NCRKRVEE-VDGEYICEF  553 (637)
T ss_pred             ------------------cccCHHHccc--------CCeEEEEEEEEEEeCCCEEEeccc--ccCeEeEc-CCCcEECCC
Confidence                              3577888765        245999999999999999999999  89999985 678999999


Q ss_pred             CCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccCCChHHHHHhcCCEEEEEEeeecccccCccc
Q psy15132        246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK  324 (786)
Q Consensus       246 C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~~~~~~~~~k~~~f~v~~k~e~y~~~~~  324 (786)
                      |++.  +|.|||+|++.|+|+||++|+++|++.|++|||++|+||.++.+  ..|.+++|++|.|+++++++  |++++
T Consensus       554 c~~~--~p~~~~~l~~~i~D~TG~~~~t~f~e~ae~l~G~sa~el~~l~~--~~l~~~~g~~~~~~~~~k~~--~~~~r  626 (637)
T PRK12366        554 CGEV--EPNELLMLNFTLDDGTGTINCRFYGKNVEKLLGMSKEELKELNL--EALEDLLGEEVVFYGNVSFR--NEELR  626 (637)
T ss_pred             CCCC--CCcEEEEEEEEEEcCCCCEEEEEEhHHhHHHhCCCHHHHHHHHH--HHHHHhcCcEEEEEEEEeec--CceeE
Confidence            9997  89999999999999999999999999999999999999998865  67888999999999999999  77664

>PRK08402 replication factor A; Reviewed

Probab=100.00  E-value=3.7e-38  Score=339.17  Aligned_cols=265  Identities=20%  Similarity=0.302  Sum_probs=219.8

Q ss_pred             ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccc-cc-CCCCcEEEEE
Q psy15132         45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET-FD-ASNKPVIAVK  122 (786)
Q Consensus        45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~-~~-~~~~~Vi~i~  122 (786)
                      ..+|.||..  ....|.+.|.|+++++.++++++. |.....++++|.|+|| ++++||||+.|.. |+ ...|+||+|+
T Consensus        62 ~~kI~dl~~--g~~~V~v~~rVl~~~~~r~f~rrd-G~~~~V~~i~l~DeTG-~ir~TlW~~~a~~~~~~l~~Gdvi~I~  137 (355)
T PRK08402         62 LMHISDLVP--GMRGVNIVGRVLRKYPPREYTKKD-GSTGRVASLIIYDDTG-RARVVLWDAKVAKYYNKINVGDVIKVI  137 (355)
T ss_pred             ccCHHHccC--CCceeeEEEEEEEccCCceeeccC-CCcceEEEEEEEcCCC-eEEEEEechhhhhhcccCCCCCEEEEE
Confidence            345666642  236899999999999999998875 7777889999999999 7799999999986 44 5889999999


Q ss_pred             eEEEeee-CCceeeeecceeEEEECCCchHHHHHHhhhhccCCCceeeeccccCCCCCCCcchhhhHHHHHhhcCCCCCC
Q psy15132        123 AARVSEF-QGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDK  201 (786)
Q Consensus       123 ~~kv~~f-~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~~~~~~~~s~~~~~~~~~~~~~~~ti~ei~~~~l~~~~~  201 (786)
                      +++|++| +|..+||++++|.|.+||+.|||+.+            ++++...+     ...++++|+++.+     +  
T Consensus       138 ~a~V~e~~~G~~eLsvg~~s~i~~~pd~~ea~~i------------~~~~~~~~-----~~~~~k~I~ei~~-----g--  193 (355)
T PRK08402        138 DAQVRESLSGLPELHINFRARIILNPDDPRVEEI------------PPLEEVRS-----YNYTRKKIGELEG-----G--  193 (355)
T ss_pred             CCEEeecCCCcEEEEECCCceEEeCCCccccccc------------cccccccc-----ccccccCHHHccc-----C--
Confidence            9999996 66559999999999999999998762            22221111     1356789999854     2  


Q ss_pred             CcEEEEEEEEEEEecCceEEeCCCCCCCCccee-eCCCceeecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHH
Q psy15132        202 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE  280 (786)
Q Consensus       202 ~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~-~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~  280 (786)
                      ..|+.++|+|.+|+. +.+|+|||  .|||||. +++++.|+|+.|++.  .|.|||+|++.|+|+||++|+++|++.|+
T Consensus       194 d~~v~v~g~Iv~i~~-~~~y~aCp--~CnKkv~~~~~~~~~~Ce~~~~v--~p~~ryil~~~l~D~TG~~~vt~f~e~ae  268 (355)
T PRK08402        194 ERFVEVRGTIAKVYR-VLVYDACP--ECRRKVDYDPATDTWICPEHGEV--EPIKITILDFGLDDGTGYIRVTLFGDDAA  268 (355)
T ss_pred             CcEEEEEEEEEEEec-CeeEecCC--CCCeEEEEecCCCCEeCCCCCCc--CcceeEEEEEEEEcCCCcEEEEEecHHHH
Confidence            278999999999997 77899999  8999998 667789999999873  78999999999999999999999999999


Q ss_pred             HHhCCChhhhhcc-C---CC---h---------HHHHHhcCCEEEEEEeeecccccCccccCCCcceeeEEEeecccccc
Q psy15132        281 SILGVTAQEVGES-T---ED---H---------PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDI  344 (786)
Q Consensus       281 ~ilg~sa~el~~~-~---e~---~---------~~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~la~~ln~~  344 (786)
                      +|||++|+||.++ +   +.   .         ..++.++|++|.||++++++.|++..        + +++-..++|+.
T Consensus       269 ~llG~sa~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rg~~~~d~y~~~~--------~-~v~~~~~vd~~  339 (355)
T PRK08402        269 ELLGVEPEEIAEKLKELIEMGLTPKEAARKLAEEEFYNIIGREIVVRGNVIEDRFLGLI--------L-KASSWDEVDYK  339 (355)
T ss_pred             HHhCCCHHHHHHHHHHhhhcccchhhhhhhHHHHHHHHhcCeEEEEEEEEEecccCCeE--------E-EEEEcccCCHH
Confidence            9999999999877 3   21   1         24678999999999999999999843        2 78889999998


Q ss_pred             cccCCcc
Q psy15132        345 ITDGTLS  351 (786)
Q Consensus       345 v~~~~L~  351 (786)
                      .|...|.
T Consensus       340 ~e~~~l~  346 (355)
T PRK08402        340 REIERVR  346 (355)
T ss_pred             HHHHHHH
Confidence            8877664

>PRK14699 replication factor A; Provisional

Probab=100.00  E-value=4e-35  Score=328.28  Aligned_cols=401  Identities=16%  Similarity=0.276  Sum_probs=286.0

Q ss_pred             CccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc---CCCCcEEEEEe
Q psy15132         47 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD---ASNKPVIAVKA  123 (786)
Q Consensus        47 ~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~---~~~~~Vi~i~~  123 (786)
                      +++||..  ....+.+.|.|.++++++++.++ +|.....++++|.|+|| +|++|||.+.|....   ...|++|-+++
T Consensus        59 kI~di~~--~~~~v~i~~rVl~i~~~r~f~r~-dG~~g~v~~~~iaDeTG-~ir~tlW~~~a~~~~~g~l~~GDvv~I~~  134 (484)
T PRK14699         59 KIENITP--ESGPVNFIARVVSVFDTKEFTRN-DGTIGRVGNLIVGDETG-KIKLTLWDNMADLIKAGKIKAGQTLQISG  134 (484)
T ss_pred             cHhHccC--CCceEEEEEEEEEecCceEEecC-CCCceEEEEEEEecCCC-eEEEEEecCccchhhhcCCCCCCEEEEcc
Confidence            3555532  34789999999999999999876 47788889999999999 999999999986544   47899999999


Q ss_pred             EEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhccCCCceeeeccccCCCCCCCcchhhhHHHHHhhcCCCCCCCc
Q psy15132        124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD  203 (786)
Q Consensus       124 ~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~~~~~~~~s~~~~~~~~~~~~~~~ti~ei~~~~l~~~~~~~  203 (786)
                      + +++.+++..|++++.|.+..-+..-+                  +.           .....|++|..   +    ..
T Consensus       135 ~-~r~~~~g~el~~~~~~~i~~~~~~i~------------------v~-----------~~~~~I~dL~~---~----~~  177 (484)
T PRK14699        135 Y-AKQGYSGVEVNIGNNGVLTESEEEID------------------VA-----------ANSQKIKDIKD---G----MG  177 (484)
T ss_pred             e-eccCCCCceEEeCCCceeeccCcccc------------------cC-----------CCCcchhhcCC---C----CC
Confidence            6 66655678899887776653211000                  00           01234555432   2    23


Q ss_pred             EEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHHh
Q psy15132        204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL  283 (786)
Q Consensus       204 ~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~il  283 (786)
                      ..++.|.|..+..-             |-+. ..+|              ...-..++.|.|.||.+++++|++.|..+-
T Consensus       178 ~V~i~gkVl~~~~~-------------R~f~-~~dG--------------~~g~v~~~~igDeTG~ir~tlW~~~a~~~~  229 (484)
T PRK14699        178 DLNLTGKVLEISEI-------------RTFQ-RKDG--------------TSGKVGNLLLGDETGTLRVTLWDDKTDFLN  229 (484)
T ss_pred             ceEEEEEEEeccCc-------------eEEe-cCCC--------------CceEEEEEEEEcCCceEEEEEECccccccc
Confidence            47888988876421             1111 1111              113456778999999999999998763211


Q ss_pred             CCChhhhhccCCChHHHHHhcCCEEEE-EEeeecccccCccccCCCcceeeEEEeecccccccccCCcccceEEEEceeE
Q psy15132        284 GVTAQEVGESTEDHPALKKALFTQYIF-RLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYI  362 (786)
Q Consensus       284 g~sa~el~~~~e~~~~~~~~~~k~~~f-~v~~k~e~y~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L~~~~iikl~~~~  362 (786)
                      +...                 +..+.+ ...++...|+++                                      +.
T Consensus       230 ~l~~-----------------Gd~v~I~~a~vr~~~~~~~--------------------------------------~e  254 (484)
T PRK14699        230 QIEY-----------------GDTVELINAYARENAFTQK--------------------------------------VE  254 (484)
T ss_pred             ccCC-----------------CCEEEEecceEeecccCCc--------------------------------------eE
Confidence            1000                 111110 000111111111                                      01


Q ss_pred             eeeeecCCCCccEEEEEEeeeeeccCcccCccccCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCce
Q psy15132        363 VSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT  442 (786)
Q Consensus       363 ~~~~~~~~~~~~~~~ii~~~~v~~~~~~~~~~ig~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (786)
                      ++..              +.+++....+                   ....                         ..++
T Consensus       255 l~~~--------------~~s~i~~~~~-------------------~~e~-------------------------~~~~  276 (484)
T PRK14699        255 LQVG--------------NRSIIRKSEK-------------------KVEY-------------------------EEEF  276 (484)
T ss_pred             EEec--------------CceEeecccc-------------------cccc-------------------------cccc
Confidence            1110              0000000000                   0000                         1135


Q ss_pred             eeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132        443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK  521 (786)
Q Consensus       443 ~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~  521 (786)
                      +||++|+|++++|+|+|||+.++++|+|++.+| +|+++++.|.|++|+|++|+|++.+ .|++.|.+|+++.+.++.++
T Consensus       277 ~~I~~L~~~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~Ir~T~W~~~a-~~~~~i~~Gd~v~i~~~y~~  355 (484)
T PRK14699        277 TPIEDIKADMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEKT-NFLDEIDFDETVEVLNAYSR  355 (484)
T ss_pred             cCHHHcCCCCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCeEEEEEeCccc-ccccccCCCceEEEEeEEEE
Confidence            799999999999999999999999999999777 8999999999999999999999999 78888999999988888864


Q ss_pred             ccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCcee
Q psy15132        522 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY  601 (786)
Q Consensus       522 ~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~  601 (786)
                           ++..+++|||+|+..|.|.++++..     .+.++|++|++|.   .+..|||+|+|++++++.+|+++ +|++.
T Consensus       356 -----~~~~~~~~eL~~~~~t~I~~~~~~~-----e~~~~~~~I~die---~~~~vdV~G~V~~v~~~~~~~~~-~g~~~  421 (484)
T PRK14699        356 -----ENTFSQQVELNLGARGIIQKSEKKV-----EYREKFTDIADII---PGESYSVQGKVSEIGELREFERE-DGTEN  421 (484)
T ss_pred             -----eccCCccEEEEecCceeEeecCCcc-----eeeeccccHHHcc---CCCeeEEEEEEEEcCCcceEEec-CCCEE
Confidence                 5556789999999999999987643     4678999999995   46799999999999999999987 59999


Q ss_pred             eEEEEEEeeccccEEEEEEecccccccc-CCCCCEEEEEeEEEee
Q psy15132        602 MKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAVKAARVSE  645 (786)
Q Consensus       602 ~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~vv~i~~~~V~~  645 (786)
                      .+|+++|.|+|| +|+|||||+.|+.|+ ...+.-|.+.+++++.
T Consensus       422 ~vr~i~l~D~TG-~Ir~tlWg~~A~~~~~~~~~~~v~~~~~~~~~  465 (484)
T PRK14699        422 VVANLQLKDETG-SIRLTLWGEQAYVIEDLDIDSEIQIIDAYARY  465 (484)
T ss_pred             EEEEEEEEcCCC-eEEEEEcchhhhhccccCCCCeEEEechhhhh
Confidence            999999999999 999999999999875 5667767777766654

>PRK08402 replication factor A; Reviewed

Probab=100.00  E-value=1.6e-35  Score=318.74  Aligned_cols=247  Identities=22%  Similarity=0.346  Sum_probs=203.6

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      +..+|++|.|+..+|++.|||+.+++.|.|.+.+| .|++.+++|.|++|.|++|+|++.++++++.|++|+|+.|.+++
T Consensus        61 ~~~kI~dl~~g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~a~~~~~~l~~Gdvi~I~~a~  140 (355)
T PRK08402         61 PLMHISDLVPGMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAKVAKYYNKINVGDVIKVIDAQ  140 (355)
T ss_pred             CccCHHHccCCCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechhhhhhcccCCCCCEEEEECCE
Confidence            57899999999999999999999999999997655 68999999999999999999999999988899999999999999


Q ss_pred             EeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCc
Q psy15132        520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK  599 (786)
Q Consensus       520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~  599 (786)
                      |+...      .+.++|++++.|.|...++.+  ..+.    |.+                        +.++.    + 
T Consensus       141 V~e~~------~G~~eLsvg~~s~i~~~pd~~--ea~~----i~~------------------------~~~~~----~-  179 (355)
T PRK08402        141 VRESL------SGLPELHINFRARIILNPDDP--RVEE----IPP------------------------LEEVR----S-  179 (355)
T ss_pred             EeecC------CCcEEEEECCCceEEeCCCcc--cccc----ccc------------------------ccccc----c-
Confidence            98641      356799999999999887654  1111    000                        00000    0 


Q ss_pred             eeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCccccHHhHHhhcCCCCCCCceEEEEEEEEEE
Q psy15132        600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVF  679 (786)
Q Consensus       600 ~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~L~ti~e~~~~~l~~~~~~~~~~v~a~I~~i  679 (786)
                                   .       .                      ..    -++|+++++       ..+|+.+.|+|+.|
T Consensus       180 -------------~-------~----------------------~~----~k~I~ei~~-------gd~~v~v~g~Iv~i  206 (355)
T PRK08402        180 -------------Y-------N----------------------YT----RKKIGELEG-------GERFVEVRGTIAKV  206 (355)
T ss_pred             -------------c-------c----------------------cc----ccCHHHccc-------CCcEEEEEEEEEEE
Confidence                         0       0                      00    034556533       12689999999999


Q ss_pred             ecCceEEeCCCCcccccccc-ccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhHHHHhCCChHHHhcc
Q psy15132        680 RGSNTTYKACPSQDCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES  758 (786)
Q Consensus       680 ~~~~~~Y~aC~~~~C~kkv~-~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~llG~sa~el~~~  758 (786)
                      +. +.+|+|||  .|||||. +..+|.|+|+.|++  .+|.|||+|++.|+|+||++|+++|+|.|++|+|++|+||.++
T Consensus       207 ~~-~~~y~aCp--~CnKkv~~~~~~~~~~Ce~~~~--v~p~~ryil~~~l~D~TG~~~vt~f~e~ae~llG~sa~el~~~  281 (355)
T PRK08402        207 YR-VLVYDACP--ECRRKVDYDPATDTWICPEHGE--VEPIKITILDFGLDDGTGYIRVTLFGDDAAELLGVEPEEIAEK  281 (355)
T ss_pred             ec-CeeEecCC--CCCeEEEEecCCCCEeCCCCCC--cCcceeEEEEEEEEcCCCcEEEEEecHHHHHHhCCCHHHHHHH
Confidence            98 77999999  5999998 66778999999987  4778999999999999999999999999999999999999988


Q ss_pred             -c---cC--h----------HHHHHhcCCeEEEEEEEEeeccCC
Q psy15132        759 -T---ED--H----------PALKKALFTQYIFRLRAKLEHYNK  786 (786)
Q Consensus       759 -~---~~--~----------~~~~~~~~k~~~f~v~~k~~~y~~  786 (786)
                       +   +.  +          +.++.++|++|.|++++++|+|||
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rg~~~~d~y~~  325 (355)
T PRK08402        282 LKELIEMGLTPKEAARKLAEEEFYNIIGREIVVRGNVIEDRFLG  325 (355)
T ss_pred             HHHhhhcccchhhhhhhHHHHHHHHhcCeEEEEEEEEEecccCC
Confidence             3   32  1          167799999999999999999986

>PRK07218 replication factor A; Provisional

Probab=100.00  E-value=9.2e-34  Score=310.85  Aligned_cols=312  Identities=19%  Similarity=0.238  Sum_probs=251.5

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      .+..+|++|.|+..+.+|+|||+.+++ |+|...+++|.+.+++|.|++|.|+.|+|++.     + |++|++|.|.|+.
T Consensus        56 ~~~~kI~Di~~~~~~V~v~~kVl~i~~-rt~r~dg~~g~v~~~~igDeTG~Ir~tlW~~~-----~-l~~Gdvv~I~na~  128 (423)
T PRK07218         56 PSSKDIKELSTDDKNVTVTGRVLTIGE-RSIRYQGDDHVIYEGILADETGTISYTAWKDF-----G-LSPGDTVTIGNAG  128 (423)
T ss_pred             CCCccHhhCCCCCceeEEEEEEEEecc-eeEecCCCceEEEEEEEECCCCeEEEEEECCC-----C-CCCCCEEEEeccE
Confidence            346799999999988899999999999 99987777899999999999999999999965     2 9999999999999


Q ss_pred             EeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCc
Q psy15132        520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK  599 (786)
Q Consensus       520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~  599 (786)
                      ++..+       +.+++++++.|.|.+.++..  ..|...+...+|.+|...  +..|+|.|.|.++.+ .+|.++ +|.
T Consensus       129 vre~~-------g~~el~ig~~t~I~~~de~~--~~~~~~~~~~kI~DL~~g--~~~V~v~g~Vl~~~~-r~f~~~-dg~  195 (423)
T PRK07218        129 VREWD-------GRPELNIGESTTVSLLDDSS--LPPYSIGGDKKLIDLGPG--DRGVNVEARVLELEH-REIDGR-DGE  195 (423)
T ss_pred             eeccC-------CceEEeccCcceEEEcCccc--ccCccccCccchhhccCC--CCceEEEEEEEEecc-eeEEcC-CCC
Confidence            98763       55899999999999887654  333223344455555543  556999999999976 688876 464


Q ss_pred             eeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc--c-----ccHHhHHhh-cCC---------
Q psy15132        600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN--L-----LLMREIQDQ-QLG---------  662 (786)
Q Consensus       600 ~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~--L-----~ti~e~~~~-~l~---------  662 (786)
                       ...+++.|.|+|| +|++|||++.++   ...|.+|.|.++.+++|+|+  |     .+|..+.++ .+.         
T Consensus       196 -~~v~~giigDeTG-~Ir~tlW~~~~~---l~~Gd~v~I~na~v~e~~G~~elnv~~~t~I~~~d~~i~v~~~~~~~~I~  270 (423)
T PRK07218        196 -TTILSGVLADETG-RLPFTDWDPLPE---IEIGASIRIEDAYVREFRGVPSVNVSEFTTVEALDREVSVSKDPPRLKIR  270 (423)
T ss_pred             -eEEEEEEEECCCc-eEEEEEeccccc---CCCCCEEEEeeeEEeccCCeEEEEECCceEEEECCCCccccCCccccchh
Confidence             5689999999999 999999999773   57899999999999999998  4     222222111 000         


Q ss_pred             --CCCCCce-EEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEE
Q psy15132        663 --MGDKADY-CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL  739 (786)
Q Consensus       663 --~~~~~~~-~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~  739 (786)
                        ....+.| ..|.|+|+.|+..+.+|.+||  .|+|+|.     .|.|+.||+.  ++.+-+++++.|.|+||++.+++
T Consensus       271 e~~~~~g~~~Vev~G~Iv~i~~gsgli~rCP--~C~r~v~-----~~~C~~hG~v--e~~~dlrik~vLDDGtg~~~~~~  341 (423)
T PRK07218        271 EAVERGGIFDVELVGNIISVRDGSGLIERCP--ECGRVIQ-----KGQCRSHGAV--EGEDDLRIKAILDDGTGSVTVIL  341 (423)
T ss_pred             hhhccCCcceEEEEEEEEEeccCCcceecCc--Ccccccc-----CCcCCCCCCc--CCeeeeEEEEEEECCCCeEEEEE
Confidence              0111234 799999999999999999999  6999984     2679999986  55677889999999999999999


Q ss_pred             ehhhHHHHhCCChHHHhccccCh-------H-HHHHhcCCeEEEEEEEEeeccC
Q psy15132        740 FQNEAESILGVTAQEVGESTEDH-------P-ALKKALFTQYIFRLRAKLEHYN  785 (786)
Q Consensus       740 F~~~ae~llG~sa~el~~~~~~~-------~-~~~~~~~k~~~f~v~~k~~~y~  785 (786)
                      |++.+++|+|++.+++.+|..+.       + +...++|+.|.++-.+..+.|.
T Consensus       342 ~~e~~e~l~G~~~e~a~~~~~~~~d~~~v~~~i~~~llG~~~~v~G~~~~~~~g  395 (423)
T PRK07218        342 DRELTEIVYGGTLEDAEELAREAMDKDVVAEDIRERLVGREYRVRGNLSVDEYG  395 (423)
T ss_pred             ChhhhHhHhCCCHHHHHHHHHhhhcchhhHHHHHHhhcCcEEEEEeccccccCC
Confidence            99999999999999988776431       1 4467999999999998888773

>PRK06386 replication factor A; Reviewed

Probab=100.00  E-value=8.6e-32  Score=287.89  Aligned_cols=308  Identities=16%  Similarity=0.265  Sum_probs=246.9

Q ss_pred             eeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEec
Q psy15132        443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP  522 (786)
Q Consensus       443 ~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~  522 (786)
                      .+|++|.|...+.+|+|||+..+ .|.+..++|+..+.+.+|.|++|.|+.|+|+..     +.|++|++|.|.|+.++.
T Consensus         3 ~kI~DI~~~~~~V~v~akVl~~~-~r~i~~~~g~~~~~~gllgDeTG~I~fT~W~~~-----~~l~~Gd~v~i~na~v~~   76 (358)
T PRK06386          3 SKISDINAARQNVDLKVKVLSLN-KRTIKNDRGETIYYYGIIGDETGTVPFTAWEFP-----DAVKSGDVIEIKYCYSKE   76 (358)
T ss_pred             cchhhcCCCCCcEEEEEEEEEcc-ceEEecCCCCeEEEEEEEECCcceEEEEecCCc-----ccCCCCCEEEEEeEEEee
Confidence            57999999999999999999998 599988888777888899999999999999952     469999999999999987


Q ss_pred             cCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceee
Q psy15132        523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM  602 (786)
Q Consensus       523 a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~  602 (786)
                      .+       +.++|+++..|.|.+..|... .+ ...+..++|.||...  +..|+|.|.|.++++ .++.+  +|.+..
T Consensus        77 ~~-------G~~~Lnv~~~t~v~~~~d~~i-ev-~~~~~~~KI~DL~~g--~~~v~V~akVle~~e-~e~~~--~g~~~~  142 (358)
T PRK06386         77 YN-------GKIRIYFDSRSEVMLKPDENI-EV-KRTYKLVKIRDLSLV--TPYVSVIGKITGITK-KEYDS--DGTSKI  142 (358)
T ss_pred             EC-------CEEEEEEcCceEEEecCcccc-cc-ccccCccEeEeccCC--CCceEEEEEEEEccC-ceEec--CCCccE
Confidence            53       467899999999986654421 22 122467788888664  567999999999977 57763  477788


Q ss_pred             EEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc--c-----ccHHhHHhh-cCCC--------CCC
Q psy15132        603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN--L-----LLMREIQDQ-QLGM--------GDK  666 (786)
Q Consensus       603 kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~--L-----~ti~e~~~~-~l~~--------~~~  666 (786)
                      .+++.|.|+|| +|++|||++.     ...|.++.|.++++++|+|+  |     .++.++.+. .++.        .+.
T Consensus       143 v~sg~lgDeTG-rIr~TlW~~~-----l~eGd~v~i~na~v~e~~G~~el~v~~~t~I~~~~~~iev~~~~~~I~di~~~  216 (358)
T PRK06386        143 VYQGYIEDDTA-RVRISSFGKP-----LEDNRFVRIENARVSQYNGYIEISVGNKSVIKEVESDINLESRNIFIFEIKSP  216 (358)
T ss_pred             EEEEEEEcCCC-eEEEEEcccc-----ccCCCEEEEeeeEEEccCCeEEEEeCCeEEEEECCCCcccCccccchhhhhcc
Confidence            89999999999 9999999983     46799999999999999998  4     233332111 0110        111


Q ss_pred             CceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhHHH
Q psy15132        667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES  746 (786)
Q Consensus       667 ~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~  746 (786)
                      .....+.|+|+.|+..+..|.+||  .|+|++.   +|  .|+.|++.  ++.+-+++++.|.|+||.+.+++|++.+++
T Consensus       217 ~g~v~i~G~iv~i~~gsgli~rCP--~C~R~l~---~g--~C~~HG~v--~~~~dlr~k~vLDDGtg~~~~~l~~e~~e~  287 (358)
T PRK06386        217 VGGITIMGFIVSVGQGSRIFTKCS--VCNKIIE---DG--VCKDHPDA--PVYLDIFGYFTISDGTGFVTCYANKDSFLP  287 (358)
T ss_pred             CCeEEEEEEEEEEcCCcEeEecCc--CCCeEcc---CC--cCCCCCCC--CCeeEEEEEEEEECCCCeEEEEEChHHhHH
Confidence            124899999999999999999999  6999885   23  79999984  445667778899999999999999999999


Q ss_pred             HhCCChHHHhccc-cChH---HHHHhcCCeEEEEEEEEeeccC
Q psy15132        747 ILGVTAQEVGEST-EDHP---ALKKALFTQYIFRLRAKLEHYN  785 (786)
Q Consensus       747 llG~sa~el~~~~-~~~~---~~~~~~~k~~~f~v~~k~~~y~  785 (786)
                      |+|++.+|+.++. +-++   +=..++|+.|.|+-.+..+.|.
T Consensus       288 l~G~~lee~~~~a~~~~~~~~i~~~llGr~~~v~G~~~~~~~~  330 (358)
T PRK06386        288 YININENEFARKASSMNPNMLIKKNLLGKCFSVTGDLRKKDDE  330 (358)
T ss_pred             HhCCCHHHHHHHhhccCHHHHhhhhhcccEEEEEcceEeccCC
Confidence            9999999997543 2222   3367999999999999988874

>PRK07211 replication factor A; Reviewed

Probab=100.00  E-value=3.9e-32  Score=300.02  Aligned_cols=269  Identities=17%  Similarity=0.295  Sum_probs=211.7

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCC--CCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNA--RGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~--~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      .+.||++|+|++++|+|+|||+.|+++|+|++.  +++|++++++|+|++|+|++|+|++.+++|++.|++|+||+|.+ 
T Consensus        52 e~~~I~dL~pg~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG~Ir~TlW~d~ad~~~~~Le~GdV~~I~~-  130 (485)
T PRK07211         52 EVNGIADIEPGMDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETGSVRVAFWDEQAVAAEEELEVGQVLRIKG-  130 (485)
T ss_pred             ccccHhhCCCCCCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCCeEEEEEechHhHhhhcccCCCCEEEEec-
Confidence            467999999999999999999999999999986  35899999999999999999999999999999999999999975 


Q ss_pred             EEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCC
Q psy15132        519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ  598 (786)
Q Consensus       519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g  598 (786)
                      .++   +.|+.+    ||+|+   .|+++.+..   +|....+|.+|.+|...  +..+||+|+|+.++++++|.++ +|
T Consensus       131 ~~~---~~ys~~----El~i~---~ve~~~d~~---i~~~~~~~~~I~dL~~~--~~~v~I~grV~~v~~iRtf~r~-dG  194 (485)
T PRK07211        131 RPK---DGYNGL----EVSVD---KVEPDPDAE---IDVQIGDTYTVEDLSLG--LSDVTLVGVVLDTDSVRTFDRD-DG  194 (485)
T ss_pred             eEe---ccccce----EEEEe---eEEEccccc---ccccccCCccHHHcCCC--CCceEEEEEEEEcCCCeEEECC-CC
Confidence            443   567653    99999   488877653   44445699999999864  6789999999999999999866 59


Q ss_pred             ceeeEEEEEEeeccccEEEEEEecccccccc-CCCCCEEEEEeEEEeecCCc--c-----ccHHhHHhh--cCC------
Q psy15132        599 KTYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAVKAARVSEFQGN--L-----LLMREIQDQ--QLG------  662 (786)
Q Consensus       599 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~vv~i~~~~V~~f~G~--L-----~ti~e~~~~--~l~------  662 (786)
                      ++.+.+++.|.|+|| +|++|||+++|+.|+ ...|+||.|++++|++|+|.  |     .++.++.++  .++      
T Consensus       195 seGkv~sv~L~DeTG-~IR~TlW~d~Ad~~~~le~G~Vv~I~~a~Vre~~g~~ELsl~~~s~I~~~~dev~~vp~~~~I~  273 (485)
T PRK07211        195 SEGRVSNLTVGDETG-RVRVTLWDDRADLAEELDAGESVEIVDGYVRERDGSLELHVGDRGAVEEVDEDVEYVPDTTPIE  273 (485)
T ss_pred             CeeEEEEEEEEcCCC-eEEEEEechhhhhhccCCCCCEEEEEeeEEEecCCcEEEEECCCceEEECCcccccccccccHh
Confidence            899999999999999 799999999999986 68899999999999999665  4     222222111  011      


Q ss_pred             CCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehh
Q psy15132        663 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN  742 (786)
Q Consensus       663 ~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~  742 (786)
                      .-+......|.|.|..+..-.              .....+|.              ...+.++.|.|.||++++++|++
T Consensus       274 dl~~g~~vdV~GvV~~v~~~r--------------tf~r~dG~--------------~~~vr~l~l~D~TG~IrvTLWg~  325 (485)
T PRK07211        274 SLEIDETVDIAGVVRSADPKR--------------TFDRDDGS--------------EGQVRNVRIQDDTGDIRVALWGE  325 (485)
T ss_pred             hcCCCCceeEEEEEEEccCcE--------------EEEcCCCC--------------EeEEEEEEEEcCCCcEEEEEeCc
Confidence            113345688888888775411              11112231              12356899999999999999999


Q ss_pred             hHHHHhCCChHHHhc
Q psy15132        743 EAESILGVTAQEVGE  757 (786)
Q Consensus       743 ~ae~llG~sa~el~~  757 (786)
                      .|+  ++++..+.+.
T Consensus       326 ~A~--~~i~~GdvV~  338 (485)
T PRK07211        326 KAD--LDIGPGDEVV  338 (485)
T ss_pred             ccc--CCCCCCCEEE
Confidence            994  3555555443

>PRK15491 replication factor A; Provisional

Probab=99.97  E-value=8.3e-30  Score=278.40  Aligned_cols=262  Identities=19%  Similarity=0.320  Sum_probs=205.3

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhh-hhccCCcEEEEcc
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFH-DMIEKDKVYYISN  517 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~-~~l~~G~vy~is~  517 (786)
                      .+++||++|+|++++|+|+|||+.++++|+|++.+| +|++++++|.|++|+|++|+|++.+++|+ +.|++|+||+|++
T Consensus        55 ~~~~kI~dL~~~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a~~~~~~~le~G~v~~I~~  134 (374)
T PRK15491         55 VDTTKIADINESSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLADLIKTGDIEVGKSLNISG  134 (374)
T ss_pred             cccccHHHCCCCCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchhhhhccCCcCCCCEEEEee
Confidence            467899999999999999999999999999999887 89999999999999999999999999999 6899999999987


Q ss_pred             eEEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecC
Q psy15132        518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN  597 (786)
Q Consensus       518 ~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~  597 (786)
                      +    +++.|+.    .||++++.|.|.++++..     ...|+|++|+||...  +..|||.|+|+.++++.+++.+ +
T Consensus       135 ~----~~~~y~g----~Ei~i~~~~~i~~~~~~~-----~~~~~~~~I~dl~~~--~~~V~I~g~V~~~~~~r~~~~~-~  198 (374)
T PRK15491        135 Y----AKEGYSG----IEVNIGRYGGISESDENV-----KASINSQKISDIKDG--DSDINIVGKVLDISDVRTFQKK-D  198 (374)
T ss_pred             e----eccCccc----EEEEeCCCceeeeccccc-----ccccCcccHHHcCCC--CccEEEEEEEEEccCceEEEec-C
Confidence            5    4556753    699999999999986543     346789999999874  4569999999999999999987 5


Q ss_pred             CceeeEEEEEEeeccccEEEEEEecccccccc-CCCCCEEEEEeEEE--eecCCc--c-----ccHHhHHhh-----cC-
Q psy15132        598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAVKAARV--SEFQGN--L-----LLMREIQDQ-----QL-  661 (786)
Q Consensus       598 g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~vv~i~~~~V--~~f~G~--L-----~ti~e~~~~-----~l-  661 (786)
                      |++..++++.|.|+|| +|++|||++.|+.|+ ...|.+|-+.++++  +.|+|.  |     .++.+..+.     .+ 
T Consensus       199 G~~~~v~~~~l~DetG-~Ir~t~W~~~a~~~~~l~~Gd~V~i~~~~~r~~~~~g~~El~~~~~s~I~~~~~~~e~~~~f~  277 (374)
T PRK15491        199 GSQGRVRNITIGDETG-KIRVTLWDGKTDLADKLENGDSVEIINGYARTNNYSQEVEIQIGNHGSLRKTDRNVEYEEDFT  277 (374)
T ss_pred             CCeEEEEEEEEECCCC-eEEEEEecchhcccccCCCCCEEEEEeceEEEeccCCCEEEEeCCCceEEECCcccccCCCcc
Confidence            9889999999999999 699999999998875 57888998877655  467676  4     112111100     00 


Q ss_pred             CCC--CCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEE
Q psy15132        662 GMG--DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL  739 (786)
Q Consensus       662 ~~~--~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~  739 (786)
                      +..  .....+.|.|.|..+..-.              .+...+|.              ....-++.|.|.||.+.+++
T Consensus       278 ~I~dl~~~~~~dv~G~V~~v~~~~--------------~~~~~~G~--------------~~~~r~i~l~D~Tg~Ir~tl  329 (374)
T PRK15491        278 PIADIIPGQPYSIKGAVSGLGDLK--------------EFTKSDGS--------------ENKVSNIYVSDDTGRIRIAL  329 (374)
T ss_pred             CHHHcCCCCceeEEEEEEEcCCcE--------------EEEccCCC--------------EeEEEeEEEEeCCCcEEEEE
Confidence            000  1123467777777764311              11111231              11234789999999999999


Q ss_pred             ehhhHHH
Q psy15132        740 FQNEAES  746 (786)
Q Consensus       740 F~~~ae~  746 (786)
                      |++.|+.
T Consensus       330 Wg~~a~~  336 (374)
T PRK15491        330 WGEKAEL  336 (374)
T ss_pred             ccccccc
Confidence            9999985

>PRK07211 replication factor A; Reviewed

Probab=99.97  E-value=8.2e-30  Score=281.66  Aligned_cols=191  Identities=18%  Similarity=0.343  Sum_probs=171.4

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      +++||++|+|++.+|+|+|||+.++++|+|.+.+| +|++++++|.|++|+|++|+|++.+++| +.|++|+||+|++++
T Consensus       160 ~~~~I~dL~~~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~IR~TlW~d~Ad~~-~~le~G~Vv~I~~a~  238 (485)
T PRK07211        160 DTYTVEDLSLGLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGRVRVTLWDDRADLA-EELDAGESVEIVDGY  238 (485)
T ss_pred             CCccHHHcCCCCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCeEEEEEechhhhhh-ccCCCCCEEEEEeeE
Confidence            46899999999999999999999999999998777 8999999999999999999999999999 789999999999999


Q ss_pred             EeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCc
Q psy15132        520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK  599 (786)
Q Consensus       520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~  599 (786)
                      |+..       .+.|||+++..|.|++++++.. .+|..    .+|.+   ...+..|||+|+|++++++.+|+++ +|+
T Consensus       239 Vre~-------~g~~ELsl~~~s~I~~~~dev~-~vp~~----~~I~d---l~~g~~vdV~GvV~~v~~~rtf~r~-dG~  302 (485)
T PRK07211        239 VRER-------DGSLELHVGDRGAVEEVDEDVE-YVPDT----TPIES---LEIDETVDIAGVVRSADPKRTFDRD-DGS  302 (485)
T ss_pred             EEec-------CCcEEEEECCCceEEECCcccc-ccccc----ccHhh---cCCCCceeEEEEEEEccCcEEEEcC-CCC
Confidence            9885       3899999999999999977432 45642    44444   4456789999999999999999866 599


Q ss_pred             eeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeec--CCc-c
Q psy15132        600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF--QGN-L  650 (786)
Q Consensus       600 ~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f--~G~-L  650 (786)
                      +..+|+++|.|+|| +|++||||+.| .++...+++|+|++++|++|  +|+ |
T Consensus       303 ~~~vr~l~l~D~TG-~IrvTLWg~~A-~~~i~~GdvV~Ikg~~V~dg~~ggleL  354 (485)
T PRK07211        303 EGQVRNVRIQDDTG-DIRVALWGEKA-DLDIGPGDEVVAADVEIQDGWQDDLEA  354 (485)
T ss_pred             EeEEEEEEEEcCCC-cEEEEEeCccc-cCCCCCCCEEEEEccEEEecCCCCEEE
Confidence            99999999999999 89999999999 56889999999999999998  677 5

>PRK15491 replication factor A; Provisional

Probab=99.96  E-value=8.8e-28  Score=262.51  Aligned_cols=192  Identities=18%  Similarity=0.323  Sum_probs=166.1

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      ++.+|++|.++..++.|+|||+.++++|.|.+.+| +++++++.|.|++|+|++|+|++.|++| +.|++|++|+|.++.
T Consensus       165 ~~~~I~dl~~~~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~Ir~t~W~~~a~~~-~~l~~Gd~V~i~~~~  243 (374)
T PRK15491        165 NSQKISDIKDGDSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGKIRVTLWDGKTDLA-DKLENGDSVEIINGY  243 (374)
T ss_pred             CcccHHHcCCCCccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCeEEEEEecchhccc-ccCCCCCEEEEEece
Confidence            35789999999889999999999999999998776 4899999999999999999999999998 779999999999998


Q ss_pred             EeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCc
Q psy15132        520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK  599 (786)
Q Consensus       520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~  599 (786)
                      ++.     +..+|+|||+|++.|.|.++++.     +.+.++|++|+||.+   +..+||+|+|++++++.+|+++ +|+
T Consensus       244 ~r~-----~~~~g~~El~~~~~s~I~~~~~~-----~e~~~~f~~I~dl~~---~~~~dv~G~V~~v~~~~~~~~~-~G~  309 (374)
T PRK15491        244 ART-----NNYSQEVEIQIGNHGSLRKTDRN-----VEYEEDFTPIADIIP---GQPYSIKGAVSGLGDLKEFTKS-DGS  309 (374)
T ss_pred             EEE-----eccCCCEEEEeCCCceEEECCcc-----cccCCCccCHHHcCC---CCceeEEEEEEEcCCcEEEEcc-CCC
Confidence            863     33568999999999999998653     255689999999986   4568999999999999999987 599


Q ss_pred             eeeEEEEEEeeccccEEEEEEecccccccc-CCCCCEEEEEeEEEee-cCC
Q psy15132        600 TYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAVKAARVSE-FQG  648 (786)
Q Consensus       600 ~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~vv~i~~~~V~~-f~G  648 (786)
                      +..+|+++|.|+|| +|++||||+.|+.+. ...+..|.+.++.+++ |+|
T Consensus       310 ~~~~r~i~l~D~Tg-~Ir~tlWg~~a~~~~~~~~g~~i~i~~~~~k~g~~~  359 (374)
T PRK15491        310 ENKVSNIYVSDDTG-RIRIALWGEKAELVDKLDIDTPIKIIDAFSKSGYNE  359 (374)
T ss_pred             EeEEEeEEEEeCCC-cEEEEEcccccccccccCCCCeEEEEEEEEeecCCC
Confidence            99999999999999 699999999998643 3455666677777765 544

>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing

Probab=99.96  E-value=1.7e-29  Score=242.92  Aligned_cols=138  Identities=39%  Similarity=0.688  Sum_probs=110.7

Q ss_pred             EEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHHh
Q psy15132        204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL  283 (786)
Q Consensus       204 ~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~il  283 (786)
                      ||+|+|+|..|+.++|||+|||++.|+|||...++|.|+|++|+++.++|.|||+|++.|+|+||++|+++||+.|++||
T Consensus         1 ~~~v~a~I~~I~~~~~~Y~aC~~~~C~kKv~~~~~~~y~C~~C~~~~~~~~~ry~l~~~i~D~tg~~~~~~F~~~a~~l~   80 (146)
T PF08646_consen    1 YFTVRATIVEIKSDNWYYPACPNEKCNKKVTENGDGSYRCEKCNKTVENPKYRYRLSLKISDGTGSIWVTLFDEEAEQLL   80 (146)
T ss_dssp             EEEEEEEEEEEETTTTEEEE-TSTTTS-B-EEETTTEEEETTTTEEESS-EEEEEEEEEEEETTEEEEEEEEHHHHHHHH
T ss_pred             CEEEEEEEEEEECCCcEECCCCCccCCCEeecCCCcEEECCCCCCcCCCeeEEEEEEEEEEeCCCeEEEEEEhHHHHHHh
Confidence            79999999999999999999998899999997777899999999999999999999999999999999999999999999


Q ss_pred             CCChhhhhccCCCh-----HHHHHhcCCEEEEEEeeecccccCccccCCCcceeeEEEeeccccccccc
Q psy15132        284 GVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITD  347 (786)
Q Consensus       284 g~sa~el~~~~e~~-----~~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~la~~ln~~v~~  347 (786)
                      |++|+||.++.+.+     ..+.+++|++|.|+|+++.++|+++.++   ++   .++-..++|..-|+
T Consensus        81 G~~a~el~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~y~~e~r~---~~---~v~~i~~vd~~~e~  143 (146)
T PF08646_consen   81 GMSADELKELKEEDPEEFPKIIKKLLGKEFVFRVRVKKESYNDESRV---KY---TVVRIEPVDYAEES  143 (146)
T ss_dssp             CCHHCCCHHHCCC-HHHHHHHHHCTTT-EEEEEEEEEE--------E---EE---EEEEEEE--HHHHH
T ss_pred             CCCHHHHHHHHhhchhHHHHHHHHhhCcEEEEEEEEEEhhhCCceEE---EE---EEEEeEeCCHHHHh
Confidence            99999999887653     3578899999999999999999987665   33   57777888877665

It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.

>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70)

Probab=99.96  E-value=1.2e-28  Score=242.44  Aligned_cols=148  Identities=38%  Similarity=0.684  Sum_probs=128.1

Q ss_pred             HHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeEEEEecCC
Q psy15132        189 REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN  268 (786)
Q Consensus       189 ~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg  268 (786)
                      ++|++.+++..+++++|.++|+|..|+.++|||+|||  .|+|||.+.+++.|+|++|++..++|.+||+|++.|+|+||
T Consensus         2 ~~i~~~~~~~~~~~~~~~v~a~I~~I~~~~~~Y~aC~--~C~kkv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg   79 (166)
T cd04476           2 AEIKEENLGEGEKPDYFTVKATIVFIKPDNWWYPACP--GCNKKVVEEGNGTYRCEKCNKSVPNPEYRYILSLNVADHTG   79 (166)
T ss_pred             chhhcccCCCCCCCCEEEEEEEEEEEcCCCeEEcccc--ccCcccEeCCCCcEECCCCCCcCCCccEEEEEEEEEEeCCC
Confidence            4566666666667899999999999999999999999  99999987554889999999999899999999999999999


Q ss_pred             cEEEEeehHHHHHHhCCChhhhhccCCCh-----HHHHHhcCCEEEEEEeeecccccCccccCCCcceeeEEEeeccccc
Q psy15132        269 SVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLND  343 (786)
Q Consensus       269 ~~~~~~F~~~a~~ilg~sa~el~~~~e~~-----~~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~la~~ln~  343 (786)
                      ++|+++||+.|++|||++|+||.++.+++     +.|.++.|++|+|+++++.++|+++.++   ++   ++.-..+++.
T Consensus        80 ~~~~~~F~~~ae~l~G~sa~el~~~~~~~~~~~~~~i~~~~gk~~~f~v~~~~~~y~~e~~~---~~---~v~~i~~~~~  153 (166)
T cd04476          80 EAWLTLFDEVAEQIFGKSAEELLELKEEDPDAFPDAIQDLVGKTFLFRVSVKEETYNDEGRI---RY---TVVKVAPVDY  153 (166)
T ss_pred             CEEEEEehHHHHHHhCCCHHHHHHHhhcCHHHHHHHHHHhhCceEEEEEEEEehhcCCcceE---EE---EEEEcccCCH
Confidence            99999999999999999999999886542     3688999999999999999999996544   33   4555666665


Q ss_pred             c
Q psy15132        344 I  344 (786)
Q Consensus       344 ~  344 (786)
                      .
T Consensus       154 ~  154 (166)
T cd04476         154 K  154 (166)
T ss_pred             H
Confidence            4

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun

>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing

Probab=99.95  E-value=3e-28  Score=234.37  Aligned_cols=118  Identities=47%  Similarity=0.837  Sum_probs=102.0

Q ss_pred             eEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhHHHHh
Q psy15132        669 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL  748 (786)
Q Consensus       669 ~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~ll  748 (786)
                      ||+|+|+|..|+.++|||+|||++.|+|||...++|.|+|++|++..+.|.|||+|++.|+|+||++|+++||+.|++||
T Consensus         1 ~~~v~a~I~~I~~~~~~Y~aC~~~~C~kKv~~~~~~~y~C~~C~~~~~~~~~ry~l~~~i~D~tg~~~~~~F~~~a~~l~   80 (146)
T PF08646_consen    1 YFTVRATIVEIKSDNWYYPACPNEKCNKKVTENGDGSYRCEKCNKTVENPKYRYRLSLKISDGTGSIWVTLFDEEAEQLL   80 (146)
T ss_dssp             EEEEEEEEEEEETTTTEEEE-TSTTTS-B-EEETTTEEEETTTTEEESS-EEEEEEEEEEEETTEEEEEEEEHHHHHHHH
T ss_pred             CEEEEEEEEEEECCCcEECCCCCccCCCEeecCCCcEEECCCCCCcCCCeeEEEEEEEEEEeCCCeEEEEEEhHHHHHHh
Confidence            79999999999999999999998889999987777899999999999999999999999999999999999999999999


Q ss_pred             CCChHHHhccccChH-----HHHHhcCCeEEEEEEEEeeccCC
Q psy15132        749 GVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK  786 (786)
Q Consensus       749 G~sa~el~~~~~~~~-----~~~~~~~k~~~f~v~~k~~~y~~  786 (786)
                      |++|+||.++.+.++     ++++++|++|.|+|+++.++|||
T Consensus        81 G~~a~el~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~y~~  123 (146)
T PF08646_consen   81 GMSADELKELKEEDPEEFPKIIKKLLGKEFVFRVRVKKESYND  123 (146)
T ss_dssp             CCHHCCCHHHCCC-HHHHHHHHHCTTT-EEEEEEEEEE-----
T ss_pred             CCCHHHHHHHHhhchhHHHHHHHHhhCcEEEEEEEEEEhhhCC
Confidence            999999999887653     88999999999999999999985

It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.

>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70)

Probab=99.95  E-value=1.2e-27  Score=235.28  Aligned_cols=131  Identities=42%  Similarity=0.776  Sum_probs=120.0

Q ss_pred             HhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCC
Q psy15132        654 REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN  733 (786)
Q Consensus       654 ~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg  733 (786)
                      +++++.+++...++++|.|+|+|..|+.++|||+|||  .|+|||.+..+|.|+|++|++..++|.|||+|++.|+|+||
T Consensus         2 ~~i~~~~~~~~~~~~~~~v~a~I~~I~~~~~~Y~aC~--~C~kkv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg   79 (166)
T cd04476           2 AEIKEENLGEGEKPDYFTVKATIVFIKPDNWWYPACP--GCNKKVVEEGNGTYRCEKCNKSVPNPEYRYILSLNVADHTG   79 (166)
T ss_pred             chhhcccCCCCCCCCEEEEEEEEEEEcCCCeEEcccc--ccCcccEeCCCCcEECCCCCCcCCCccEEEEEEEEEEeCCC
Confidence            4666777766667899999999999999999999999  79999986555899999999999999999999999999999


Q ss_pred             cEEEEEehhhHHHHhCCChHHHhccccCh-----HHHHHhcCCeEEEEEEEEeeccCC
Q psy15132        734 SVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNK  786 (786)
Q Consensus       734 ~~~~~~F~~~ae~llG~sa~el~~~~~~~-----~~~~~~~~k~~~f~v~~k~~~y~~  786 (786)
                      ++|+++||+.|++|||+||+||.++.+++     +.|.++.|++|+|+++++.++||+
T Consensus        80 ~~~~~~F~~~ae~l~G~sa~el~~~~~~~~~~~~~~i~~~~gk~~~f~v~~~~~~y~~  137 (166)
T cd04476          80 EAWLTLFDEVAEQIFGKSAEELLELKEEDPDAFPDAIQDLVGKTFLFRVSVKEETYND  137 (166)
T ss_pred             CEEEEEehHHHHHHhCCCHHHHHHHhhcCHHHHHHHHHHhhCceEEEEEEEEehhcCC
Confidence            99999999999999999999999988764     288999999999999999999996

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun

>PRK14699 replication factor A; Provisional

Probab=99.94  E-value=3.9e-24  Score=239.99  Aligned_cols=266  Identities=20%  Similarity=0.311  Sum_probs=205.2

Q ss_pred             eeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132        443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK  521 (786)
Q Consensus       443 ~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~  521 (786)
                      .+|++|.|+....+|+|||+.++++|+|.+.+| +|++++++|.|++|+|++|+|++.++ +++.|++|++|+|.++.++
T Consensus       167 ~~I~dL~~~~~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG~ir~tlW~~~a~-~~~~l~~Gd~v~I~~a~vr  245 (484)
T PRK14699        167 QKIKDIKDGMGDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETGTLRVTLWDDKTD-FLNQIEYGDTVELINAYAR  245 (484)
T ss_pred             cchhhcCCCCCceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCceEEEEEECcccc-cccccCCCCEEEEecceEe
Confidence            589999999888899999999999999998776 78999999999999999999999885 7888999999999999887


Q ss_pred             ccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCcee
Q psy15132        522 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY  601 (786)
Q Consensus       522 ~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~  601 (786)
                      ..  .|   .+.++|+++..|.|...++..  .+   ..++.+|.+|...  ...++|.|.|+++++++++.++ +|++.
T Consensus       246 ~~--~~---~~~~el~~~~~s~i~~~~~~~--e~---~~~~~~I~~L~~~--~~~v~I~grV~~~~~~r~~~~~-~Gseg  312 (484)
T PRK14699        246 EN--AF---TQKVELQVGNRSIIRKSEKKV--EY---EEEFTPIEDIKAD--MNNINISGRVLDISEVRTFEKK-DGSPG  312 (484)
T ss_pred             ec--cc---CCceEEEecCceEeecccccc--cc---cccccCHHHcCCC--CceeEEEEEEEEcCCCeEEEcC-CCCee
Confidence            62  33   379999999999888775443  22   2367889999753  5789999999999999999966 58899


Q ss_pred             eEEEEEEeeccccEEEEEEecccccccc-CCCCCEEEEEeEEEee--cCCc--c----cc-HHhHHh--h---c---CCC
Q psy15132        602 MKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAVKAARVSE--FQGN--L----LL-MREIQD--Q---Q---LGM  663 (786)
Q Consensus       602 ~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~vv~i~~~~V~~--f~G~--L----~t-i~e~~~--~---~---l~~  663 (786)
                      ..+++.|.|+|| .|++|||+++|..++ ...++++-+.++++++  |++.  |    .+ +.+..+  +   .   ++.
T Consensus       313 ~v~~~~l~DeTG-~Ir~T~W~~~a~~~~~i~~Gd~v~i~~~y~~~~~~~~~~eL~~~~~t~I~~~~~~~e~~~~~~~I~d  391 (484)
T PRK14699        313 RVGNLLLGDSTG-KIRLTLWDEKTNFLDEIDFDETVEVLNAYSRENTFSQQVELNLGARGIIQKSEKKVEYREKFTDIAD  391 (484)
T ss_pred             EEEEEEEECCCC-eEEEEEeCcccccccccCCCceEEEEeEEEEeccCCccEEEEecCceeEeecCCcceeeeccccHHH
Confidence            999999999999 799999999995544 4678889899998875  4554  3    11 111000  0   0   000


Q ss_pred             CCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhh
Q psy15132        664 GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE  743 (786)
Q Consensus       664 ~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~  743 (786)
                      -+....+.|.|.|..+.+-.            . .. ..+|            .  ....-++.|.|+||++++++||+.
T Consensus       392 ie~~~~vdV~G~V~~v~~~~------------~-~~-~~~g------------~--~~~vr~i~l~D~TG~Ir~tlWg~~  443 (484)
T PRK14699        392 IIPGESYSVQGKVSEIGELR------------E-FE-REDG------------T--ENVVANLQLKDETGSIRLTLWGEQ  443 (484)
T ss_pred             ccCCCeeEEEEEEEEcCCcc------------e-EE-ecCC------------C--EEEEEEEEEEcCCCeEEEEEcchh
Confidence            12345789999998876521            1 11 1123            1  123447899999999999999999


Q ss_pred             HHHHhCCC
Q psy15132        744 AESILGVT  751 (786)
Q Consensus       744 ae~llG~s  751 (786)
                      |+.+=.+.
T Consensus       444 A~~~~~~~  451 (484)
T PRK14699        444 AYVIEDLD  451 (484)
T ss_pred             hhhccccC
Confidence            98754444

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

Probab=99.93  E-value=1.3e-25  Score=202.61  Aligned_cols=103  Identities=65%  Similarity=1.092  Sum_probs=98.9

Q ss_pred             eecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC-CcEEEEEcchhHHHhhhhccCCcEEEEcceEEec
Q psy15132        444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP  522 (786)
Q Consensus       444 ~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~-G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~  522 (786)
                      ||++|+|++.+|+|+|||++|+++|.|.+.+++|++|+|+|+|++ |+|+|++|++++++|++.|++|+||+|++|.|++
T Consensus         1 pI~~L~p~~~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~~   80 (104)
T cd04474           1 PISSLNPYQNKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKGSVKV   80 (104)
T ss_pred             ChhHccCCCCcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEeccEEee
Confidence            799999999999999999999999999998889999999999995 5799999999999999999999999999999999


Q ss_pred             cCCcccccCCceEEEEccccEEEE
Q psy15132        523 ANKKFSSINNDYEMSFTHSTTVIP  546 (786)
Q Consensus       523 a~~~y~~~~~~yei~f~~~T~I~~  546 (786)
                      |+++|++++|+|||.|+.+|.|++
T Consensus        81 a~~~y~~~~~~yeI~f~~~t~~~~  104 (104)
T cd04474          81 ANKKFNTLKNDYEITFNRDTSIIE  104 (104)
T ss_pred             ccccCCCCCCcEEEEECCCcEEeC
Confidence            999999999999999999998863

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

Probab=99.87  E-value=7.2e-22  Score=177.80  Aligned_cols=101  Identities=50%  Similarity=0.870  Sum_probs=96.4

Q ss_pred             ceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeec
Q psy15132         59 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLS  138 (786)
Q Consensus        59 ~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~  138 (786)
                      +|||+|+|+++++++++++|++|++..||+|.|.|+|+.++.|||||++|+.+....++||+|+++|+++|+ +++|+++
T Consensus         1 ~vDvig~V~~v~~~~~i~~k~~g~~~~~r~v~i~D~t~~~i~vtLWg~~a~~~~~~~~~vv~~~~~~i~~~~-~~~l~~~   79 (101)
T cd04475           1 IVDVIGVVKSVGPVTTITTKSTGRELDKREITLVDESGHSVELTLWGEQAELFDGSENPVIAIKGVKVSEFN-GKSLSTG   79 (101)
T ss_pred             CEeEEEEEeEccCcEEEEEecCCCceeEEEEEEEeCCCCEEEEEEEHHHhhhcccCCCCEEEEEeeEEEecC-CeEEeec
Confidence            589999999999999999998788999999999999999999999999999998777999999999999998 6899999


Q ss_pred             ceeEEEECCCchHHHHHHhhhh
Q psy15132        139 MSSVLSLNPDIPECHKLQGWFS  160 (786)
Q Consensus       139 ~~s~i~~npd~pe~~~l~~w~~  160 (786)
                      .+|.|++||++||+.+|+.||.
T Consensus        80 ~~s~i~~np~~~e~~~l~~w~~  101 (101)
T cd04475          80 SSSTIIINPDIPEAHKLRGWYD  101 (101)
T ss_pred             CceeEEECCCcHHHHHHHHhhC
Confidence            9999999999999999999984

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functiona

>PRK07218 replication factor A; Provisional

Probab=99.86  E-value=5.8e-20  Score=202.25  Aligned_cols=253  Identities=19%  Similarity=0.273  Sum_probs=198.4

Q ss_pred             CCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccCCC-CceEEEEEEEEeccceeEeeccCCceeeEEEEEEE
Q psy15132         14 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD-ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV   92 (786)
Q Consensus        14 ~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~~~-~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~   92 (786)
                      ....++.+.+.|.|...+++  ...|   +......+|..+..+ ..|+|.|.|.++.+ ++|..+. | +...++..|.
T Consensus       133 ~g~~el~ig~~t~I~~~de~--~~~~---~~~~~~~kI~DL~~g~~~V~v~g~Vl~~~~-r~f~~~d-g-~~~v~~giig  204 (423)
T PRK07218        133 DGRPELNIGESTTVSLLDDS--SLPP---YSIGGDKKLIDLGPGDRGVNVEARVLELEH-REIDGRD-G-ETTILSGVLA  204 (423)
T ss_pred             CCceEEeccCcceEEEcCcc--cccC---ccccCccchhhccCCCCceEEEEEEEEecc-eeEEcCC-C-CeEEEEEEEE
Confidence            35689999999999988653  2222   223445555555544 56999999999965 7888664 5 4568999999


Q ss_pred             eCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhccCCCceeeecc
Q psy15132         93 DQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ  172 (786)
Q Consensus        93 D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~~~~~~~~s~  172 (786)
                      |+|| +|++|||++++.   ...|.+|-|.+|.+++|+|..+|+++..|.|..+|+..++..                  
T Consensus       205 DeTG-~Ir~tlW~~~~~---l~~Gd~v~I~na~v~e~~G~~elnv~~~t~I~~~d~~i~v~~------------------  262 (423)
T PRK07218        205 DETG-RLPFTDWDPLPE---IEIGASIRIEDAYVREFRGVPSVNVSEFTTVEALDREVSVSK------------------  262 (423)
T ss_pred             CCCc-eEEEEEeccccc---CCCCCEEEEeeeEEeccCCeEEEEECCceEEEECCCCccccC------------------
Confidence            9999 999999999763   368999999999999999999999999999998875432211                  


Q ss_pred             ccCCCCCCCcchhhhHHHHHhhcCCCCCCCcE-EEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCC
Q psy15132        173 RTGGMGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFN  251 (786)
Q Consensus       173 ~~~~~~~~~~~~~~ti~ei~~~~l~~~~~~~~-~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~  251 (786)
                               ..+++.|.++.+.      .+.| ..|.|+|..|...+-.|.+||  .|+|+|.     .|.|+.|++.  
T Consensus       263 ---------~~~~~~I~e~~~~------~g~~~Vev~G~Iv~i~~gsgli~rCP--~C~r~v~-----~~~C~~hG~v--  318 (423)
T PRK07218        263 ---------DPPRLKIREAVER------GGIFDVELVGNIISVRDGSGLIERCP--ECGRVIQ-----KGQCRSHGAV--  318 (423)
T ss_pred             ---------Cccccchhhhhcc------CCcceEEEEEEEEEeccCCcceecCc--Ccccccc-----CCcCCCCCCc--
Confidence                     1124567776542      2334 589999999998877888999  8999994     3799999986  


Q ss_pred             ceeEeeeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccCCC----h---HHH-HHhcCCEEEEEEeeeccccc
Q psy15132        252 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED----H---PAL-KKALFTQYIFRLRAKLEHYN  320 (786)
Q Consensus       252 ~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~----~---~~~-~~~~~k~~~f~v~~k~e~y~  320 (786)
                      .|.+-..+++.+.|+||++.+++|++.+++|.|++.++..++..+    .   ..+ ..++|++|.++-.+..+.|.
T Consensus       319 e~~~dlrik~vLDDGtg~~~~~~~~e~~e~l~G~~~e~a~~~~~~~~d~~~v~~~i~~~llG~~~~v~G~~~~~~~g  395 (423)
T PRK07218        319 EGEDDLRIKAILDDGTGSVTVILDRELTEIVYGGTLEDAEELAREAMDKDVVAEDIRERLVGREYRVRGNLSVDEYG  395 (423)
T ss_pred             CCeeeeEEEEEEECCCCeEEEEEChhhhHhHhCCCHHHHHHHHHhhhcchhhHHHHHHhhcCcEEEEEeccccccCC
Confidence            677888899999999999999999999999999999987665321    1   234 55999999999988888873

>PRK06386 replication factor A; Reviewed

Probab=99.81  E-value=3.5e-18  Score=183.50  Aligned_cols=251  Identities=14%  Similarity=0.189  Sum_probs=191.8

Q ss_pred             CCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEE
Q psy15132         13 INNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV   92 (786)
Q Consensus        13 ~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~   92 (786)
                      ....++|.++..|.|.+..|.+ ..+ ...+..++|.||..  ....++|.|.|.++.+ .++.++  |.....+++.|.
T Consensus        77 ~~G~~~Lnv~~~t~v~~~~d~~-iev-~~~~~~~KI~DL~~--g~~~v~V~akVle~~e-~e~~~~--g~~~~v~sg~lg  149 (358)
T PRK06386         77 YNGKIRIYFDSRSEVMLKPDEN-IEV-KRTYKLVKIRDLSL--VTPYVSVIGKITGITK-KEYDSD--GTSKIVYQGYIE  149 (358)
T ss_pred             ECCEEEEEEcCceEEEecCccc-ccc-ccccCccEeEeccC--CCCceEEEEEEEEccC-ceEecC--CCccEEEEEEEE
Confidence            4567899999999997765431 222 11245566777732  3467999999999977 577643  445678999999


Q ss_pred             eCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhccCCCceeeecc
Q psy15132         93 DQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ  172 (786)
Q Consensus        93 D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~~~~~~~~s~  172 (786)
                      |+|| +|++|||++.     ...+.++-|.++.+.+|+|..+|+++..|.|...|+.-|+                    
T Consensus       150 DeTG-rIr~TlW~~~-----l~eGd~v~i~na~v~e~~G~~el~v~~~t~I~~~~~~iev--------------------  203 (358)
T PRK06386        150 DDTA-RVRISSFGKP-----LEDNRFVRIENARVSQYNGYIEISVGNKSVIKEVESDINL--------------------  203 (358)
T ss_pred             cCCC-eEEEEEcccc-----ccCCCEEEEeeeEEEccCCeEEEEeCCeEEEEECCCCccc--------------------
Confidence            9999 9999999983     3679999999999999999999999999998876532210                    


Q ss_pred             ccCCCCCCCcchhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCc
Q psy15132        173 RTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNT  252 (786)
Q Consensus       173 ~~~~~~~~~~~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~  252 (786)
                               ..+.+.|++|.+..       .-..+.|+|..|....-.|.+||  .|+|++..     +.|+.|++.  .
T Consensus       204 ---------~~~~~~I~di~~~~-------g~v~i~G~iv~i~~gsgli~rCP--~C~R~l~~-----g~C~~HG~v--~  258 (358)
T PRK06386        204 ---------ESRNIFIFEIKSPV-------GGITIMGFIVSVGQGSRIFTKCS--VCNKIIED-----GVCKDHPDA--P  258 (358)
T ss_pred             ---------CccccchhhhhccC-------CeEEEEEEEEEEcCCcEeEecCc--CCCeEccC-----CcCCCCCCC--C
Confidence                     01246688887631       12578899999998777888999  89999962     589999973  4


Q ss_pred             eeEeeeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccC-CCh-HH-H-HHhcCCEEEEEEeeecccccC
Q psy15132        253 FTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST-EDH-PA-L-KKALFTQYIFRLRAKLEHYNG  321 (786)
Q Consensus       253 ~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~-e~~-~~-~-~~~~~k~~~f~v~~k~e~y~~  321 (786)
                      +.+-..+.+.|.|+||.+.+++|++.+++|+|++-+|+.++- +-+ .. + ..++|+.|.|+-.+..+.|.-
T Consensus       259 ~~~dlr~k~vLDDGtg~~~~~l~~e~~e~l~G~~lee~~~~a~~~~~~~~i~~~llGr~~~v~G~~~~~~~~~  331 (358)
T PRK06386        259 VYLDIFGYFTISDGTGFVTCYANKDSFLPYININENEFARKASSMNPNMLIKKNLLGKCFSVTGDLRKKDDEI  331 (358)
T ss_pred             CeeEEEEEEEEECCCCeEEEEEChHHhHHHhCCCHHHHHHHhhccCHHHHhhhhhcccEEEEEcceEeccCCe
Confidence            566666778999999999999999999999999999987542 111 12 2 558999999999988887664

>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

Probab=99.81  E-value=1.2e-19  Score=164.77  Aligned_cols=97  Identities=37%  Similarity=0.579  Sum_probs=89.3

Q ss_pred             EEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc------CCCCcEEEEEe-EEEeeeCCce
Q psy15132         61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------ASNKPVIAVKA-ARVSEFQGGK  133 (786)
Q Consensus        61 DViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~------~~~~~Vi~i~~-~kv~~f~g~~  133 (786)
                      ||||+|++|++++++..+  |++..||+|+|+|.++.++.|||||++|.+|+      ...+||||+.. +||++|+|++
T Consensus         1 DviG~i~~v~~~~~~~~~--~~~~~kr~~~i~D~~~~~l~~tlwG~~A~~f~~~~~~~~~~~~VVav~~~~rV~~~~g~~   78 (106)
T cd04481           1 DVIGVIVDVGPLEELPPV--NKPSRKLDFEIRDLSDERLKCTLWGEYAEEFDAKFQSAGNGEPVVAVLRFWKIKEYKGPK   78 (106)
T ss_pred             CeeEEEEEecceEecccC--CccceEEEEEEEeCCCCEEEEEEEHHHHHHHHHHHHHhCCCCcEEEEEEeEEEEEEcCCc
Confidence            899999999999999887  67889999999999999999999999999986      36889998755 9999999989


Q ss_pred             eeeec-ceeEEEECCCchHHHHHHhhh
Q psy15132        134 TLSLS-MSSVLSLNPDIPECHKLQGWF  159 (786)
Q Consensus       134 ~ls~~-~~s~i~~npd~pe~~~l~~w~  159 (786)
                      +||.. ++|+|++||++||+.+|+..+
T Consensus        79 ~ls~~~~~s~v~inp~ipe~~~~~~~~  105 (106)
T cd04481          79 SLSNSFGASKVYINPDIPEVPEIKMSL  105 (106)
T ss_pred             EEEcCCCceEEEECCCcHHHHHHHhhC
Confidence            99999 999999999999999998653

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change.

>PRK07217 replication factor A; Reviewed

Probab=99.73  E-value=9.2e-17  Score=167.12  Aligned_cols=196  Identities=21%  Similarity=0.307  Sum_probs=151.8

Q ss_pred             eccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEe
Q psy15132        561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA  640 (786)
Q Consensus       561 ~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~  640 (786)
                      ..++|.||...  +..|+|.|.|+.+++..      .+  ...+.-.|.|+|| +|++|+|++.. .-....|.++.|.+
T Consensus        71 ~~~kI~Di~~~--~~~VsV~aKVl~l~e~~------~~--si~qvGllgDETG-~IkfT~W~~s~-~~~leeGd~~rI~n  138 (311)
T PRK07217         71 ELVNIADIDEP--EQWVDVTAKVVQLWEPS------SD--SIAQVGLLGDETG-TIKFTKWAKSD-LPELEEGKSYLLKN  138 (311)
T ss_pred             CceeeeecCCC--CCcEEEEEEEEEecCCC------CC--ceEEEEEEEcCCc-eEEEEEccCCC-CCcccCCCEEEEEe
Confidence            34567777754  67899999999998754      12  2344568999999 99999999732 11367899999999


Q ss_pred             EEEeecCCc--c-----ccHHhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCC
Q psy15132        641 ARVSEFQGN--L-----LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNK  713 (786)
Q Consensus       641 ~~V~~f~G~--L-----~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~  713 (786)
                      +.+++|+|+  |     .++.++.+. +.  -+.+...+.|+++.|++++.....||.++|+|.+.   .|  .|+.|++
T Consensus       139 a~v~ey~G~~~lnlg~~t~I~~~de~-Ie--V~~~~vei~G~lVdi~~GsglI~rCP~~~C~Rvl~---~g--~C~~HG~  210 (311)
T PRK07217        139 VVTDEYQGRFSVKLNRTTSIEELDED-IE--VGDDEVEVEGALVDIQSGSGLIKRCPEEDCTRVLQ---NG--RCSEHGK  210 (311)
T ss_pred             EEEeeECCEEEEEeCCceEEEeCCCC-cc--ccCccccceeEEEEEeCCCCCeecCCccccCcccc---CC--CCCCCCC
Confidence            999999998  4     334443222 11  12234789999999999999999999888999873   23  6999998


Q ss_pred             cCCceeEEEEEEEEEEecCCcEEEEEehhhHHHHhCCChHHHhccccC--h------HHHHHhcCCeEEEEEE
Q psy15132        714 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED--H------PALKKALFTQYIFRLR  778 (786)
Q Consensus       714 ~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~llG~sa~el~~~~~~--~------~~~~~~~~k~~~f~v~  778 (786)
                      .-+  .+-+++++.|.|+||++.+.+.++..++|.|++.+|+.+|..+  |      ++-+.++|+.|.|+-.
T Consensus       211 ve~--~~DLrik~vlDDGt~~~~~~~~~e~te~l~G~~l~eak~~a~dald~~vv~~~i~~~llGr~~~v~G~  281 (311)
T PRK07217        211 VEG--EFDLRIKGVLDDGEEVQEVIFNREATEELTGITLEEAKQMAMDALDTGVVLDELKEKLLGRYYRVTGP  281 (311)
T ss_pred             cCC--ceeeEEEEEEECCCCeEEEEEChHHhHHHhCCCHHHHHHHHHHhhchhhHHHHHHHhhcCceEEEEec
Confidence            654  4667789999999999999999999999999999999887632  2      1335799999998764

>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

Probab=99.65  E-value=4.6e-16  Score=135.59  Aligned_cols=84  Identities=30%  Similarity=0.529  Sum_probs=76.1

Q ss_pred             EEEEEEeecCCcceecCC-CCCceEEEEEEEcCCC-cEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCc
Q psy15132        456 TIKARVTNKTPIREWNNA-RGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINND  533 (786)
Q Consensus       456 ~I~~RV~~k~~~r~~~~~-~~~g~~~~~~L~D~~G-~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~  533 (786)
                      +|+|||+     |.|... ..+|..++|+|+|++| +|+|++|++++++|++.|+||+||.|++|.|.++++.|++++|+
T Consensus         1 ~I~Vrv~-----r~W~~~~~~~~~~~~miL~De~G~~I~a~i~~~~~~~f~~~L~eg~vy~is~f~v~~~~~~y~~~~~~   75 (86)
T cd04480           1 KICVRVL-----RLWDVYNNASGESLEMVLVDEKGNRIHATIPKRLAAKFRPLLKEGKWYTISNFEVAPNTGSYRPTDHP   75 (86)
T ss_pred             CEEEEEE-----EEEcCcCCCCCcEEEEEEEcCCCCEEEEEECHHHHHhhhhhceeCCEEEEeeEEEEcCCCcccccCCc
Confidence            4899999     556532 2278999999999999 69999999999999999999999999999999999999999999


Q ss_pred             eEEEEccccEE
Q psy15132        534 YEMSFTHSTTV  544 (786)
Q Consensus       534 yei~f~~~T~I  544 (786)
                      |+|.|..+|.|
T Consensus        76 y~I~f~~~T~V   86 (86)
T cd04480          76 YKIKFMSDTVV   86 (86)
T ss_pred             EEEEeecCcCC
Confidence            99999998864

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.

>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding

Probab=99.58  E-value=6.2e-15  Score=130.88  Aligned_cols=88  Identities=27%  Similarity=0.525  Sum_probs=81.5

Q ss_pred             EEEEEcCCCc-EEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcce
Q psy15132        481 SIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK  559 (786)
Q Consensus       481 ~~~L~D~~G~-I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~  559 (786)
                      .|+|+|++|. |+|+++++++++|.+.|+||+||.|++|.|.++.+.|++++|+|+|.|..+|.|.++++.+  ..|  .
T Consensus         1 emvL~De~G~~I~A~I~~~~~~~f~~~l~Eg~~y~i~~F~V~~~~~~yr~t~h~y~I~f~~~T~V~~~~~~~--~~~--~   76 (95)
T PF02721_consen    1 EMVLVDEKGDKIQATIPKELVDKFKDSLKEGSWYTISNFTVSPNSGSYRPTDHKYKINFMPNTKVTEIDPPS--DPP--F   76 (95)
T ss_pred             CEEEEecCCCEEEEEECHHHHHHHHhhcccCCEEEeEeEEEEeCCCceeccCCCEEEEECCcCeEEECCCCC--CCc--e
Confidence            4799999995 9999999999999999999999999999999999999999999999999999999997654  334  8


Q ss_pred             eeccCcccccccC
Q psy15132        560 YCFVPLKTIAEIS  572 (786)
Q Consensus       560 ~~f~~i~dl~~~~  572 (786)
                      |+|++|++|.+..
T Consensus        77 ~~f~~F~~I~~~~   89 (95)
T PF02721_consen   77 FNFTPFDEILEGT   89 (95)
T ss_pred             EeecCHHHHhcCc
Confidence            9999999999864

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

Probab=99.49  E-value=1.2e-13  Score=124.27  Aligned_cols=74  Identities=47%  Similarity=0.787  Sum_probs=70.2

Q ss_pred             eeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc
Q psy15132        576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~  649 (786)
                      .|||+|+|+++++++++++|++|++..+|+|.|.|+|+.+++|||||++|+.+....++||+|+++++++|+|+
T Consensus         1 ~vDvig~V~~v~~~~~i~~k~~g~~~~~r~v~i~D~t~~~i~vtLWg~~a~~~~~~~~~vv~~~~~~i~~~~~~   74 (101)
T cd04475           1 IVDVIGVVKSVGPVTTITTKSTGRELDKREITLVDESGHSVELTLWGEQAELFDGSENPVIAIKGVKVSEFNGK   74 (101)
T ss_pred             CEeEEEEEeEccCcEEEEEecCCCceeEEEEEEEeCCCCEEEEEEEHHHhhhcccCCCCEEEEEeeEEEecCCe
Confidence            48999999999999999999779999999999999999999999999999998877799999999999999986

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functiona

>PRK07217 replication factor A; Reviewed

Probab=99.42  E-value=1.7e-11  Score=128.02  Aligned_cols=201  Identities=22%  Similarity=0.295  Sum_probs=148.7

Q ss_pred             cCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEE
Q psy15132         46 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR  125 (786)
Q Consensus        46 ~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~k  125 (786)
                      +++.||..  .+..|+|.|.|.++.+.+.      +.  .-+.=.|.|+|| +|.+|+|++.. .-....|.++-|.+|.
T Consensus        73 ~kI~Di~~--~~~~VsV~aKVl~l~e~~~------~s--i~qvGllgDETG-~IkfT~W~~s~-~~~leeGd~~rI~na~  140 (311)
T PRK07217         73 VNIADIDE--PEQWVDVTAKVVQLWEPSS------DS--IAQVGLLGDETG-TIKFTKWAKSD-LPELEEGKSYLLKNVV  140 (311)
T ss_pred             eeeeecCC--CCCcEEEEEEEEEecCCCC------Cc--eEEEEEEEcCCc-eEEEEEccCCC-CCcccCCCEEEEEeEE
Confidence            44555532  4678999999999987542      22  122336999999 99999999742 1124679999999999


Q ss_pred             EeeeCCceeeeecceeEEEECCCchHHHHHHhhhhccCCCceeeeccccCCCCCCCcchhhhHHHHHhhcCCCCCCCcEE
Q psy15132        126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYC  205 (786)
Q Consensus       126 v~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~~~~~~~~s~~~~~~~~~~~~~~~ti~ei~~~~l~~~~~~~~~  205 (786)
                      +++|+|..+|+++..|.|...++.-++                                       .+         .-.
T Consensus       141 v~ey~G~~~lnlg~~t~I~~~de~IeV---------------------------------------~~---------~~v  172 (311)
T PRK07217        141 TDEYQGRFSVKLNRTTSIEELDEDIEV---------------------------------------GD---------DEV  172 (311)
T ss_pred             EeeECCEEEEEeCCceEEEeCCCCccc---------------------------------------cC---------ccc
Confidence            999999999999999988765421100                                       00         002


Q ss_pred             EEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHHhCC
Q psy15132        206 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV  285 (786)
Q Consensus       206 ~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~ilg~  285 (786)
                      .+.|.+..|...+-....||.+.|+|.+.     .+.|+.|++.  .+.+-..+++.+.|+||++.+.+-.+..++|.|+
T Consensus       173 ei~G~lVdi~~GsglI~rCP~~~C~Rvl~-----~g~C~~HG~v--e~~~DLrik~vlDDGt~~~~~~~~~e~te~l~G~  245 (311)
T PRK07217        173 EVEGALVDIQSGSGLIKRCPEEDCTRVLQ-----NGRCSEHGKV--EGEFDLRIKGVLDDGEEVQEVIFNREATEELTGI  245 (311)
T ss_pred             cceeEEEEEeCCCCCeecCCccccCcccc-----CCCCCCCCCc--CCceeeEEEEEEECCCCeEEEEEChHHhHHHhCC
Confidence            45678888887665666999555999994     2589999986  4566677888999999999999999999999999


Q ss_pred             ChhhhhccCCC--h-----HHH-HHhcCCEEEEEEe
Q psy15132        286 TAQEVGESTED--H-----PAL-KKALFTQYIFRLR  313 (786)
Q Consensus       286 sa~el~~~~e~--~-----~~~-~~~~~k~~~f~v~  313 (786)
                      +-+|+.++..+  +     ..| ..++|+.|.|+-.
T Consensus       246 ~l~eak~~a~dald~~vv~~~i~~~llGr~~~v~G~  281 (311)
T PRK07217        246 TLEEAKQMAMDALDTGVVLDELKEKLLGRYYRVTGP  281 (311)
T ss_pred             CHHHHHHHHHHhhchhhHHHHHHHhhcCceEEEEec
Confidence            99998776422  1     123 3588999977764

>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair

Probab=99.33  E-value=1.5e-12  Score=116.26  Aligned_cols=64  Identities=33%  Similarity=0.562  Sum_probs=56.5

Q ss_pred             ccCccccCCCcceeeEEEeecccccccccCCcccceEEEEceeEeeeeecCCCCccEEEEEEeeeeecc
Q psy15132        319 YNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP  387 (786)
Q Consensus       319 y~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L~~~~iikl~~~~~~~~~~~~~~~~~~~ii~~~~v~~~  387 (786)
                      =.+|+++|||.|+ .++||++|+|+++++|.|++|+||||++|.++.+++    +|+++||+++||+.+
T Consensus        38 ~RyR~~lSDG~~~-~~amLatqln~lv~~g~l~~~siirl~~y~~n~v~~----~k~iiiil~leVv~~  101 (101)
T PF04057_consen   38 DRYRLVLSDGVHS-IQAMLATQLNHLVESGELQKGSIIRLKQYTCNTVKN----GKKIIIILDLEVVQS  101 (101)
T ss_dssp             -EEEEEEESSSEE-EEEEESGGGHHHHHTTSSSTT-EEEEEEEEEEESTT----SSEEEEEEEEEEEE-
T ss_pred             ceEEEEEEChHHH-HHHHhHHHhHHHHhcCCcccCCEEEEeEEEEeeccC----CCEEEEEEeeEEEeC
Confidence            4458999999996 599999999999999999999999999999999964    389999999999863

The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.

>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70)

Probab=99.28  E-value=1.1e-12  Score=115.99  Aligned_cols=61  Identities=36%  Similarity=0.594  Sum_probs=56.4

Q ss_pred             cCccccCCCcceeeEEEeecccccccccCCcccceEEEEceeEeeeeecCCCCccEEEEEEeeeeec
Q psy15132        320 NGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK  386 (786)
Q Consensus       320 ~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L~~~~iikl~~~~~~~~~~~~~~~~~~~ii~~~~v~~  386 (786)
                      .+|+.+|||.|++ ++||++|+|+++++|.|++|+||||++|+++.++     +|+++||+++||+.
T Consensus        37 RyRi~lSDG~~~~-~amLatqln~~v~~g~l~~~sIirl~~y~~~~i~-----~k~viiIldlevl~   97 (97)
T cd04477          37 RYRILLSDGVYYV-QAMLATQLNPLVESGQLQRGSIIRLKRFICNVIK-----GKRILIILDLEVVQ   97 (97)
T ss_pred             eEEEEEEChhHHH-HHHHhhhhhhHHhcCCccCCcEEEECeEEEEEec-----CcEEEEEEeeEEeC
Confidence            5689999999965 9999999999999999999999999999999995     38899999999973

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.

>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

Probab=99.27  E-value=1e-11  Score=112.68  Aligned_cols=69  Identities=36%  Similarity=0.620  Sum_probs=63.7

Q ss_pred             eEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccccc------CCCCCEEEEEe-EEEeecCC
Q psy15132        578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------ASNKPVIAVKA-ARVSEFQG  648 (786)
Q Consensus       578 DViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~------~~~~~vv~i~~-~~V~~f~G  648 (786)
                      ||||+|++|+++.++..+  |++..+|+++|+|.++.+++|||||++|+.|+      ...+|||++.. +||++|+|
T Consensus         1 DviG~i~~v~~~~~~~~~--~~~~~kr~~~i~D~~~~~l~~tlwG~~A~~f~~~~~~~~~~~~VVav~~~~rV~~~~g   76 (106)
T cd04481           1 DVIGVIVDVGPLEELPPV--NKPSRKLDFEIRDLSDERLKCTLWGEYAEEFDAKFQSAGNGEPVVAVLRFWKIKEYKG   76 (106)
T ss_pred             CeeEEEEEecceEecccC--CccceEEEEEEEeCCCCEEEEEEEHHHHHHHHHHHHHhCCCCcEEEEEEeEEEEEEcC
Confidence            899999999999999887  88999999999999999999999999999987      36889998765 99999987

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change.

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)

Probab=99.20  E-value=1.3e-10  Score=110.38  Aligned_cols=96  Identities=18%  Similarity=0.331  Sum_probs=80.0

Q ss_pred             EeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCC---CEEEEEeccccccccc-CCCCcE
Q psy15132         43 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ---ASVTMTLWGKEAETFD-ASNKPV  118 (786)
Q Consensus        43 ~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~---~~i~~tLWg~~a~~~~-~~~~~V  118 (786)
                      |+|++|++|.+ ..+..|||||+|++++++..    .+|+. .++.|+|.|+|+   ..+++++|++.++.+. ...|+|
T Consensus         1 ~~f~~i~~~~~-~~~~~v~vigVV~~~~~p~~----s~g~d-~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDV   74 (138)
T cd04497           1 YKYTPLSSALK-ESGGSVNVIGVVVDAGPPVR----SKGTD-YCCTLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDI   74 (138)
T ss_pred             CceEeHHHHHh-ccCCeEEEEEEEeecCCCcc----cCCCc-EEEEEEEECCCCCCCCcEEEEEECCChhhCCCCCCCCE
Confidence            57899999987 67899999999999999754    23555 899999999998   7899999999999987 488999


Q ss_pred             EEEEeEEEeeeCCceeeeecc-eeEEE
Q psy15132        119 IAVKAARVSEFQGGKTLSLSM-SSVLS  144 (786)
Q Consensus       119 i~i~~~kv~~f~g~~~ls~~~-~s~i~  144 (786)
                      |++++++|..|+|...+.... .|.+.
T Consensus        75 Ill~~~kv~~~~g~~~~~~~~~~ss~a  101 (138)
T cd04497          75 ILLRRVKIQSYNGKPQGISNDRGSSWA  101 (138)
T ss_pred             EEEEEEEEEEECCceEEEECCCceeEE
Confidence            999999999998765443333 55553

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB

>COG1599 RFA1 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [DNA replication, recombination, and repair]

Probab=99.08  E-value=1.2e-09  Score=122.59  Aligned_cols=183  Identities=28%  Similarity=0.345  Sum_probs=143.9

Q ss_pred             CCceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC-CcEEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-GEIRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       439 ~~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~-G~I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      ...+.++..+.|+.     ++||+.++++|+|.+.++++++++..|.|++ |.+..+.|.+.        +.|++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~-----~~~v~~g~~ik~~~~~~ge~~~~~~~~~d~~~~~~~~~~~~~~--------~~g~~~~ie~  225 (407)
T COG1599         159 AREIGEESLLSPYQ-----KARVVVGSEIKTFDNQGGESKVFSNELEDEERGVIVFTDWDPS--------QDGDVYRIEG  225 (407)
T ss_pred             ccccccccccCccc-----eEEEEecccceeEecCCCccceEeeeecccceeEEEeccCccc--------ccceeeeecC
Confidence            34677888888887     8999999999999999999999999999998 77888888764        9999999999


Q ss_pred             eEEeccCCcccccCCceEEEEccc--cEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEee
Q psy15132        518 CTLKPANKKFSSINNDYEMSFTHS--TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGK  595 (786)
Q Consensus       518 ~~V~~a~~~y~~~~~~yei~f~~~--T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k  595 (786)
                      .+|+..++++... +.+++.+...  +.|.++.+..  .+|..... +...++.    +..+|    |+.+.+...+..+
T Consensus       226 ~~v~~~~~~~~~~-~~~e~~~~~~~~~~i~~~~~~~--~~~~~~~~-~~~~~~~----~~~v~----v~~~~~c~~~~~~  293 (407)
T COG1599         226 ARVKTKNKQPEEN-LAEELVLRVEVRVAIEKAEREE--FVDEVKES-VSLVEAD----GAVVD----VTRVPECERVVRK  293 (407)
T ss_pred             cEEEEeccccccc-ccceEEEeecceeeccCCCCcc--ccceeecc-cccceec----cceEE----EEECCCceEEEeC
Confidence            9999999988877 9999999987  5555554433  34443332 2222222    23344    7788777777655


Q ss_pred             cCCceeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc
Q psy15132        596 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       596 ~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~  649 (786)
                       ++.....+++.|.|.+| +++++|||+ +..+....+++.++++.++.++.|+
T Consensus       294 -~~~~~~~~~~~l~D~~g-~~rv~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~  344 (407)
T COG1599         294 -GGCKGHGKDIGLDDLTG-KIRVTLWGD-ATEVLINEESVEALKGINVEDASGI  344 (407)
T ss_pred             -CCcccccccceEecCce-EEEEecCCC-ceEEEecccchhheeeeeeeeccch
Confidence             57778889999999988 999999998 4445567788889999999999886

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)

Probab=98.97  E-value=4e-09  Score=91.02  Aligned_cols=81  Identities=25%  Similarity=0.367  Sum_probs=71.7

Q ss_pred             EEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceE
Q psy15132        456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE  535 (786)
Q Consensus       456 ~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~ye  535 (786)
                      +|.|||+.+++.|.|.+.+++++++++.|.|++|.|++++|++.+   .+.|++|++|.|.++.++..       .+.++
T Consensus         1 ~v~~~V~~~~~~~~~~~~g~~~~~~~~~l~D~TG~i~~~~W~~~~---~~~~~~G~vv~i~~~~v~~~-------~g~~q   70 (82)
T cd04491           1 SVEGKVLSISEPREFTRDGSEGKVQSGLVGDETGTIRFTLWDEKA---ADDLEPGDVVRIENAYVREF-------NGRLE   70 (82)
T ss_pred             CEEEEEEEccCCeEeccCCCeeEEEEEEEECCCCEEEEEEECchh---cccCCCCCEEEEEeEEEEec-------CCcEE
Confidence            478999999999999854557899999999999999999999876   67799999999999999764       37789


Q ss_pred             EEEccccEEEE
Q psy15132        536 MSFTHSTTVIP  546 (786)
Q Consensus       536 i~f~~~T~I~~  546 (786)
                      |+++..|.|++
T Consensus        71 l~i~~~~~i~~   81 (82)
T cd04491          71 LSVGKNSEIEK   81 (82)
T ss_pred             EEeCCceEEEE
Confidence            99999998875

SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating

>PRK06461 single-stranded DNA-binding protein; Reviewed

Probab=98.95  E-value=5.6e-09  Score=97.89  Aligned_cols=99  Identities=13%  Similarity=0.219  Sum_probs=86.3

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V  520 (786)
                      ++.+|++|.|...+..+.++|+.+++.|.+...++.+++.++.|.|++|.|++++|++.++    .|++|+++.|.|+.+
T Consensus         3 ~~~kI~dL~~g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~a~----~l~~GdvV~I~na~v   78 (129)
T PRK06461          3 MITKIKDLKPGMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQAG----SLKEGEVVEIENAWT   78 (129)
T ss_pred             CceEHHHcCCCCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCccc----cCCCCCEEEEECcEE
Confidence            4679999999988899999999999999988776667899999999999999999998653    589999999999998


Q ss_pred             eccCCcccccCCceEEEEccccEEEEccCC
Q psy15132        521 KPANKKFSSINNDYEMSFTHSTTVIPCNED  550 (786)
Q Consensus       521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d~  550 (786)
                      +..       ....+|++++.+.|.+++++
T Consensus        79 ~~f-------~G~lqL~i~~~~~i~~~~~~  101 (129)
T PRK06461         79 TLY-------RGKVQLNVGKYGSISESDDE  101 (129)
T ss_pred             eee-------CCEEEEEECCCEEEEECCcc
Confidence            753       35689999999999988653

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)

Probab=98.94  E-value=2.9e-09  Score=101.22  Aligned_cols=84  Identities=19%  Similarity=0.421  Sum_probs=74.8

Q ss_pred             eeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccc---cEEEEEEecccccccc-CCCCCE
Q psy15132        560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ---ASVTMTLWGKEAETFD-ASNKPV  635 (786)
Q Consensus       560 ~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~---~~i~~tLWg~~a~~~~-~~~~~v  635 (786)
                      |+|++|++|.. ..+..|||||+|++++++..    ++|++ .++.|.|.|.|+   ..+++++|++.++.+. ...|+|
T Consensus         1 ~~f~~i~~~~~-~~~~~v~vigVV~~~~~p~~----s~g~d-~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDV   74 (138)
T cd04497           1 YKYTPLSSALK-ESGGSVNVIGVVVDAGPPVR----SKGTD-YCCTLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDI   74 (138)
T ss_pred             CceEeHHHHHh-ccCCeEEEEEEEeecCCCcc----cCCCc-EEEEEEEECCCCCCCCcEEEEEECCChhhCCCCCCCCE
Confidence            57899999997 57889999999999999763    34665 789999999998   7899999999999988 688999


Q ss_pred             EEEEeEEEeecCCc
Q psy15132        636 IAVKAARVSEFQGN  649 (786)
Q Consensus       636 v~i~~~~V~~f~G~  649 (786)
                      |++++++|+.|+|+
T Consensus        75 Ill~~~kv~~~~g~   88 (138)
T cd04497          75 ILLRRVKIQSYNGK   88 (138)
T ss_pred             EEEEEEEEEEECCc
Confidence            99999999999996

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)

Probab=98.94  E-value=1.1e-08  Score=88.36  Aligned_cols=81  Identities=23%  Similarity=0.323  Sum_probs=72.1

Q ss_pred             EEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecce
Q psy15132         61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMS  140 (786)
Q Consensus        61 DViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~  140 (786)
                      +|+|.|++++++.+++ + +|+....+++.|.|+|| +|++++|++.+ ......+.++.++++++++|+|..+|++...
T Consensus         1 ~v~~~V~~~~~~~~~~-~-~g~~~~~~~~~l~D~TG-~i~~~~W~~~~-~~~~~~G~vv~i~~~~v~~~~g~~ql~i~~~   76 (82)
T cd04491           1 SVEGKVLSISEPREFT-R-DGSEGKVQSGLVGDETG-TIRFTLWDEKA-ADDLEPGDVVRIENAYVREFNGRLELSVGKN   76 (82)
T ss_pred             CEEEEEEEccCCeEec-c-CCCeeEEEEEEEECCCC-EEEEEEECchh-cccCCCCCEEEEEeEEEEecCCcEEEEeCCc
Confidence            4899999999999998 5 57788899999999999 99999999987 4445788899999999999999999999988


Q ss_pred             eEEEE
Q psy15132        141 SVLSL  145 (786)
Q Consensus       141 s~i~~  145 (786)
                      |.|..
T Consensus        77 ~~i~~   81 (82)
T cd04491          77 SEIEK   81 (82)
T ss_pred             eEEEE
Confidence            88764

SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating

>PRK06461 single-stranded DNA-binding protein; Reviewed

Probab=98.87  E-value=2.5e-08  Score=93.52  Aligned_cols=94  Identities=19%  Similarity=0.360  Sum_probs=78.6

Q ss_pred             cCccchhccCCC-CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeE
Q psy15132         46 VPLKTIAEISPD-ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA  124 (786)
Q Consensus        46 ~~~~~i~~~~~~-~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~  124 (786)
                      ++++||   .++ ..|+++|+|+++++.+.+.+|+ + ....++++|.|+|| +|.+|||++.|..+  ..+.||.|+++
T Consensus         5 ~kI~dL---~~g~~~v~~~~~V~~i~~~~~~~~k~-~-~~~v~~~~l~D~TG-~I~~tlW~~~a~~l--~~GdvV~I~na   76 (129)
T PRK06461          5 TKIKDL---KPGMERVNVTVRVLEVGEPKVIQTKG-G-PRTISEAVVGDETG-RVKLTLWGEQAGSL--KEGEVVEIENA   76 (129)
T ss_pred             eEHHHc---CCCCCceEEEEEEEEcCCceEEEeCC-C-ceEEEEEEEECCCC-EEEEEEeCCccccC--CCCCEEEEECc
Confidence            344555   445 6899999999999999988873 3 45678999999999 79999999988765  56899999999


Q ss_pred             EEeeeCCceeeeecceeEEEECC
Q psy15132        125 RVSEFQGGKTLSLSMSSVLSLNP  147 (786)
Q Consensus       125 kv~~f~g~~~ls~~~~s~i~~np  147 (786)
                      ++++|+|..+|+++..|.|..-+
T Consensus        77 ~v~~f~G~lqL~i~~~~~i~~~~   99 (129)
T PRK06461         77 WTTLYRGKVQLNVGKYGSISESD   99 (129)
T ss_pred             EEeeeCCEEEEEECCCEEEEECC
Confidence            99999999999999888887543

>KOG0851|consensus

Probab=98.85  E-value=4.2e-08  Score=102.89  Aligned_cols=177  Identities=20%  Similarity=0.338  Sum_probs=133.0

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCC-CCCceEEEEEEEcCCCc-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNA-RGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~-~~~g~~~~~~L~D~~G~-I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      .++++.+|+|..++|.|.++|+     +.|... ...+..+.|+|.|+.|. |.|++......+|.+.|++|+++.|..|
T Consensus         3 ~~~~l~~l~~~~t~w~i~~~vl-----~v~~~~~~~~~~~~~~il~D~~~~~i~a~i~~~~~~~~~~~l~~~~w~~i~~f   77 (246)
T KOG0851|consen    3 GFHRLRDLSPSITGWRIQVKVL-----RVWKKYSNPNGEELRLVLADEHGVKIEATVGRRLSSKYEDNLIENEWKIITTF   77 (246)
T ss_pred             cccchhhcCcCceeeEEEEEEE-----EEEEecCCCCccEEEEEEEecCCcEEEEEcchHHHhhhhhheecceeEEeeee
Confidence            5789999999999999999999     566542 23468899999999995 9999999999999999999999999999


Q ss_pred             EEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcc-eeeccCccccccc--CCCceeeEEE-EEEEcccceeEEe
Q psy15132        519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV-KYCFVPLKTIAEI--SPDENIDVLG-VCIDAAELSSVTG  594 (786)
Q Consensus       519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~-~~~f~~i~dl~~~--~~~~~vDViG-vV~~V~~~~~i~~  594 (786)
                      .|.++...++.+.|.|++.|...+.+......    .|-. ..+|.++..+.+.  .....+|++| .+..|+.+..-. 
T Consensus        78 ~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~v~~~~~~~-  152 (246)
T KOG0851|consen   78 GVNPNSGQVRATTHSFKINFMDFTVVTSSDTR----LPCTPWGKFTPFDSIVEDKSDKRVLVDLIGVAVYDVSQLTVTP-  152 (246)
T ss_pred             eecccccceeeeeeEEEEEeccceeeccCCCC----ccceeccccchhhhhhccccCCcEEEEeeceeEEEeeeeEecc-
Confidence            99999999999999999999877777655332    2222 4567777555554  3567899988 677776654221 


Q ss_pred             ecCCceeeEEEEEEeeccc-----cEEEEEEeccccccc
Q psy15132        595 KTNQKTYMKRDITLVDQSQ-----ASVTMTLWGKEAETF  628 (786)
Q Consensus       595 k~~g~~~~kr~i~l~D~s~-----~~i~~tLWg~~a~~~  628 (786)
                       +.++....+.+...+.++     ....|...++.|..|
T Consensus       153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  190 (246)
T KOG0851|consen  153 -AIDTDVDGFYLTFKICNKSKFSKPVLWCEACGEQATDF  190 (246)
T ss_pred             -cccCCcceEEEEEeecccccccCceEEehhhcchHHhh
Confidence             135677788888888664     234444444444444

>COG1599 RFA1 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [DNA replication, recombination, and repair]

Probab=98.73  E-value=2.1e-07  Score=104.62  Aligned_cols=186  Identities=17%  Similarity=0.215  Sum_probs=137.9

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCCCC-ceEEEEEEEcCCCcEEE-EEcchhHHHhhhhccCCcEEEEcc
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRA-TMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~-g~~~~~~L~D~~G~I~a-t~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      ..+.+|+++.+...+-.+.+||...+..+.+.+..+. +++.+..+.|+.|+++. +.|...+.   ..+++|+++.|.+
T Consensus        47 ~~~~~i~~~~~~~~~~~v~~~V~~~~e~~~~~~k~g~~~~l~~~~v~Detg~v~~~~~~~~~a~---~~~e~Gdv~~i~~  123 (407)
T COG1599          47 ESIGKISDISEASSRVNVTGRVLSIGEKKTFDRKRGAEGKLAEVLVGDETGSVKTVTLWNIAAL---EKLEPGDVIRIRN  123 (407)
T ss_pred             hhcccccccchhhccccEEEEECccccceeeecccccccceEEEEEecCCCCEEEEeecccccc---ccCCccceEEecC
Confidence            3567999999999999999999999988888876664 89999999999999999 79998653   3589999999999


Q ss_pred             eEEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecC
Q psy15132        518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN  597 (786)
Q Consensus       518 ~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~  597 (786)
                      +.+...       .+..++.++..+.+...++..  ..+...+.-..+.++....   ..+ .+.|..-+++.++...  
T Consensus       124 ~~~~~~-------~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~i~~~~~~~---~~~-~~~v~~g~~ik~~~~~--  188 (407)
T COG1599         124 AYTSLY-------RGGKRLSVGRVGSVADVDDEE--DEARESEDAREIGEESLLS---PYQ-KARVVVGSEIKTFDNQ--  188 (407)
T ss_pred             cccccc-------cCceeeecccccccccCchhh--ccccccccccccccccccC---ccc-eEEEEecccceeEecC--
Confidence            876553       356788999988888776643  1222222223333333321   122 6677777777777654  


Q ss_pred             CceeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc
Q psy15132        598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       598 g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~  649 (786)
                      +.+...+...|.|++-..+.+++|...      ..+++..+.+++|..|++.
T Consensus       189 ~ge~~~~~~~~~d~~~~~~~~~~~~~~------~~g~~~~ie~~~v~~~~~~  234 (407)
T COG1599         189 GGESKVFSNELEDEERGVIVFTDWDPS------QDGDVYRIEGARVKTKNKQ  234 (407)
T ss_pred             CCccceEeeeecccceeEEEeccCccc------ccceeeeecCcEEEEeccc
Confidence            566778889999998448999999875      4567788888888888764

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands

Probab=97.77  E-value=6.7e-05  Score=62.99  Aligned_cols=71  Identities=27%  Similarity=0.473  Sum_probs=56.5

Q ss_pred             eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCce
Q psy15132        455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY  534 (786)
Q Consensus       455 w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~y  534 (786)
                      ++|.|+|.++.        ++.++++.++|.|++|.|++++|++...++.+.|++|+++.+. +.++..+..      ++
T Consensus         1 V~v~G~V~~~~--------~~~~~~~~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~-G~v~~~~~~------~~   65 (75)
T PF01336_consen    1 VTVEGRVTSIR--------RSGGKIVFFTLEDGTGSIQVVFFNEEYERFREKLKEGDIVRVR-GKVKRYNGG------EL   65 (75)
T ss_dssp             EEEEEEEEEEE--------EEETTEEEEEEEETTEEEEEEEETHHHHHHHHTS-TTSEEEEE-EEEEEETTS------SE
T ss_pred             CEEEEEEEEEE--------cCCCCEEEEEEEECCccEEEEEccHHhhHHhhcCCCCeEEEEE-EEEEEECCc------cE
Confidence            47899999754        2346899999999999999999998889999999999999999 788765322      35


Q ss_pred             EEEEcc
Q psy15132        535 EMSFTH  540 (786)
Q Consensus       535 ei~f~~  540 (786)
                      +|....
T Consensus        66 ~l~~~~   71 (75)
T PF01336_consen   66 ELIVPK   71 (75)
T ss_dssp             EEEEEE
T ss_pred             EEEECE
Confidence            665543

The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []

Probab=97.77  E-value=0.00031  Score=67.58  Aligned_cols=97  Identities=18%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCC-------CEEEEEecccccccccC--CC
Q psy15132         45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ-------ASVTMTLWGKEAETFDA--SN  115 (786)
Q Consensus        45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~-------~~i~~tLWg~~a~~~~~--~~  115 (786)
                      |+++.+.. ...+..+||+|+|++.++.....++  |+ -....|+|.|.|.       ..|.|.++-+..+.+..  ..
T Consensus         1 ~~~l~~~~-~~~~~~vnvigVV~~~~~p~~~~t~--g~-D~~~tl~i~D~S~~~~~~~~~~l~v~iF~~~~~~LP~v~~~   76 (146)
T PF02765_consen    1 YTPLSTAK-EKFGKFVNVIGVVVDFSPPNPKKTR--GT-DYMCTLTITDPSLNDSNQKLSGLTVNIFRPHKESLPNVKSV   76 (146)
T ss_dssp             BCCGGGSC-TTSSEEEEEEEEEEEEEEECTEEES--SS-CEEEEEEEEBTTCSCSSCCCCEEEEEEEESSHHHSCTTCST
T ss_pred             Cccchhhh-hcCCCEEEEEEEEEEccCCcceEcC--CC-cEEEEEEEECCCCCccccccCCEEEEEECCCHHHCCCCCCC
Confidence            44555332 3467899999999999988545554  43 4688999999986       68999999888888864  34


Q ss_pred             CcEEEEEeEEEeeeCCceeeeecce--eEEEE
Q psy15132        116 KPVIAVKAARVSEFQGGKTLSLSMS--SVLSL  145 (786)
Q Consensus       116 ~~Vi~i~~~kv~~f~g~~~ls~~~~--s~i~~  145 (786)
                      |+||.++.++|..|+|...+-....  |.+.+
T Consensus        77 GDii~l~r~kv~~~~~~~~~~~~~~~~ss~~v  108 (146)
T PF02765_consen   77 GDIIRLRRVKVQSYNGKPQGLSNSTSNSSWAV  108 (146)
T ss_dssp             THEEEEEEEEEEEETTEEEEEEECECTEEEEE
T ss_pred             CCEEEEEEEEEEEECCEEEEEecCCCcEEEEE
Confidence            9999999999999998877654443  66644

It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [, , ]. ; GO: 0003677 DNA binding, 0000723 telomere maintenance, 0000784 nuclear chromosome, telomeric region; PDB: 1S40_A 1KXL_A 1PH7_A 1PH9_A 1PH2_A 1OTC_A 1PHJ_A 1JB7_A 1PA6_A 1PH1_A ....

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

Probab=97.66  E-value=0.00015  Score=65.43  Aligned_cols=81  Identities=9%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             CcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccccc--CCCCCEEEEEeE
Q psy15132        564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKAA  641 (786)
Q Consensus       564 ~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~vv~i~~~  641 (786)
                      ||++|...  ....-+.|.|+..+++..+..+.  .+....++.|.|+.|.+|++|+|++.++.|.  ...|.|+.|.++
T Consensus         1 pI~~L~p~--~~~~~I~~rV~~k~~~~~f~~~~--~~g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~   76 (104)
T cd04474           1 PISSLNPY--QNKWTIKARVTNKSDIRTWSNAR--GEGKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKG   76 (104)
T ss_pred             ChhHccCC--CCcEEEEEEEeeccccccccCCC--CCcEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEecc
Confidence            45666654  34578999999999999887653  3455669999999777999999999999886  578999999999


Q ss_pred             EEeecCC
Q psy15132        642 RVSEFQG  648 (786)
Q Consensus       642 ~V~~f~G  648 (786)
                      +|+.-++
T Consensus        77 ~V~~a~~   83 (104)
T cd04474          77 SVKVANK   83 (104)
T ss_pred             EEeeccc
Confidence            9986544

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct

>KOG3416|consensus

Probab=97.36  E-value=0.00082  Score=60.63  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             eeeecccCCCCCceEEEEEEeecCCcceecCCCCCc-eEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132        442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG-KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       442 ~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g-~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V  520 (786)
                      ..+|+||.|+.++..+..-|+.-+..+.-    .+| .+.++-++|++|.|++.+|++.    -..|+.||++.++++.-
T Consensus         4 ~i~ikdi~P~~kN~~v~fIvl~~g~~tkT----kdg~~v~~~kVaD~TgsI~isvW~e~----~~~~~PGDIirLt~Gy~   75 (134)
T KOG3416|consen    4 MIFIKDIKPGLKNINVTFIVLEYGRATKT----KDGHEVRSCKVADETGSINISVWDEE----GCLIQPGDIIRLTGGYA   75 (134)
T ss_pred             chhHhhcChhhhcceEEEEEEeeceeeec----cCCCEEEEEEEecccceEEEEEecCc----CcccCCccEEEecccch
Confidence            36899999999998888777754433322    134 8899999999999999999965    46799999999999754

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []

Probab=97.30  E-value=0.0013  Score=63.17  Aligned_cols=84  Identities=19%  Similarity=0.385  Sum_probs=65.0

Q ss_pred             ccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccc-------cEEEEEEecccccccc-CC-C
Q psy15132        562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ-------ASVTMTLWGKEAETFD-AS-N  632 (786)
Q Consensus       562 f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~-------~~i~~tLWg~~a~~~~-~~-~  632 (786)
                      |+|+++... ..+..|||+|+|++..+.....+|  |++ ....++|.|.|.       ..|.|.++.+..+.+. .. .
T Consensus         1 ~~~l~~~~~-~~~~~vnvigVV~~~~~p~~~~t~--g~D-~~~tl~i~D~S~~~~~~~~~~l~v~iF~~~~~~LP~v~~~   76 (146)
T PF02765_consen    1 YTPLSTAKE-KFGKFVNVIGVVVDFSPPNPKKTR--GTD-YMCTLTITDPSLNDSNQKLSGLTVNIFRPHKESLPNVKSV   76 (146)
T ss_dssp             BCCGGGSCT-TSSEEEEEEEEEEEEEEECTEEES--SSC-EEEEEEEEBTTCSCSSCCCCEEEEEEEESSHHHSCTTCST
T ss_pred             Cccchhhhh-cCCCEEEEEEEEEEccCCcceEcC--CCc-EEEEEEEECCCCCccccccCCEEEEEECCCHHHCCCCCCC
Confidence            455553332 357899999999999887444444  543 467999999995       5899999998888887 33 4


Q ss_pred             CCEEEEEeEEEeecCCc
Q psy15132        633 KPVIAVKAARVSEFQGN  649 (786)
Q Consensus       633 ~~vv~i~~~~V~~f~G~  649 (786)
                      |+||.+++++|..|+|+
T Consensus        77 GDii~l~r~kv~~~~~~   93 (146)
T PF02765_consen   77 GDIIRLRRVKVQSYNGK   93 (146)
T ss_dssp             THEEEEEEEEEEEETTE
T ss_pred             CCEEEEEEEEEEEECCE
Confidence            99999999999999996

It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [, , ]. ; GO: 0003677 DNA binding, 0000723 telomere maintenance, 0000784 nuclear chromosome, telomeric region; PDB: 1S40_A 1KXL_A 1PH7_A 1PH9_A 1PH2_A 1OTC_A 1PHJ_A 1JB7_A 1PA6_A 1PH1_A ....

>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding

Probab=97.24  E-value=0.00035  Score=61.97  Aligned_cols=48  Identities=21%  Similarity=0.489  Sum_probs=41.7

Q ss_pred             ccccccCCCcCCCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhc
Q psy15132          2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE   53 (786)
Q Consensus         2 ~v~~A~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~   53 (786)
                      .|.++.++|++++|+|+|.|..+|.|.++++.  ...|  .|+|++|++|.+
T Consensus        40 ~V~~~~~~yr~t~h~y~I~f~~~T~V~~~~~~--~~~~--~~~f~~F~~I~~   87 (95)
T PF02721_consen   40 TVSPNSGSYRPTDHKYKINFMPNTKVTEIDPP--SDPP--FFNFTPFDEILE   87 (95)
T ss_pred             EEEeCCCceeccCCCEEEEECCcCeEEECCCC--CCCc--eEeecCHHHHhc
Confidence            47889999999999999999999999999653  3344  899999999985

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=96.42  E-value=0.014  Score=47.88  Aligned_cols=59  Identities=29%  Similarity=0.518  Sum_probs=48.7

Q ss_pred             EEEEEeecCCcceecCCCCCceEEEEEEEcCC-CcEEEEEcchhHHHhhhhccCCcEEEEcceEEec
Q psy15132        457 IKARVTNKTPIREWNNARGSGKLFSIDLLDES-GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP  522 (786)
Q Consensus       457 I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~-G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~  522 (786)
                      +.++|+.....++      .+..+.+.|.|.+ |.|.+++|.+..+.+...+++|+++.+. +++..
T Consensus         2 v~g~v~~~~~~~~------~~~~~~~~l~D~~~~~i~~~~~~~~~~~~~~~~~~g~~v~v~-g~v~~   61 (75)
T cd03524           2 IVGIVVAVEEIRT------EGKVLIFTLTDGTGGTIRVTLFGELAEELENLLKEGQVVYIK-GKVKK   61 (75)
T ss_pred             eEEEEEeeccccc------CCeEEEEEEEcCCCCEEEEEEEchHHHHHHhhccCCCEEEEE-EEEEe
Confidence            6678886554433      2367899999999 8899999999988998999999999999 88754

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands

Probab=96.18  E-value=0.034  Score=46.34  Aligned_cols=68  Identities=21%  Similarity=0.356  Sum_probs=49.6

Q ss_pred             eEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc--CCCCcEEEEEeEEEeeeCCc-eeee
Q psy15132         60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKAARVSEFQGG-KTLS  136 (786)
Q Consensus        60 vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~Vi~i~~~kv~~f~g~-~~ls  136 (786)
                      |-|.|.|+++.       ++.+   ....++|.|.|| ++.+++|++.+..+.  ...+.+|.+. +++..|+++ .+|.
T Consensus         1 V~v~G~V~~~~-------~~~~---~~~~~~l~D~tg-~i~~~~~~~~~~~~~~~l~~g~~v~v~-G~v~~~~~~~~~l~   68 (75)
T PF01336_consen    1 VTVEGRVTSIR-------RSGG---KIVFFTLEDGTG-SIQVVFFNEEYERFREKLKEGDIVRVR-GKVKRYNGGELELI   68 (75)
T ss_dssp             EEEEEEEEEEE-------EEET---TEEEEEEEETTE-EEEEEEETHHHHHHHHTS-TTSEEEEE-EEEEEETTSSEEEE
T ss_pred             CEEEEEEEEEE-------cCCC---CEEEEEEEECCc-cEEEEEccHHhhHHhhcCCCCeEEEEE-EEEEEECCccEEEE
Confidence            46889988886       2112   355799999997 999999995544432  3688888888 789999887 7776


Q ss_pred             ecc
Q psy15132        137 LSM  139 (786)
Q Consensus       137 ~~~  139 (786)
                      +..
T Consensus        69 ~~~   71 (75)
T PF01336_consen   69 VPK   71 (75)
T ss_dssp             EEE
T ss_pred             ECE
Confidence            543

The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....

>KOG3416|consensus

Probab=95.95  E-value=0.044  Score=49.75  Aligned_cols=86  Identities=21%  Similarity=0.321  Sum_probs=63.7

Q ss_pred             ccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEe
Q psy15132         48 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVS  127 (786)
Q Consensus        48 ~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~  127 (786)
                      +.||....  ..+.|+=+|.+.+..+.  +| +|+  ..|.....|+|| +|++.+|+|....|  +.++||-+.++.-+
T Consensus         7 ikdi~P~~--kN~~v~fIvl~~g~~tk--Tk-dg~--~v~~~kVaD~Tg-sI~isvW~e~~~~~--~PGDIirLt~Gy~S   76 (134)
T KOG3416|consen    7 IKDIKPGL--KNINVTFIVLEYGRATK--TK-DGH--EVRSCKVADETG-SINISVWDEEGCLI--QPGDIIRLTGGYAS   76 (134)
T ss_pred             HhhcChhh--hcceEEEEEEeeceeee--cc-CCC--EEEEEEEecccc-eEEEEEecCcCccc--CCccEEEecccchh
Confidence            45554321  34556677788776532  33 465  468889999998 99999999877665  67899999999999


Q ss_pred             eeCCceeeeecceeEE
Q psy15132        128 EFQGGKTLSLSMSSVL  143 (786)
Q Consensus       128 ~f~g~~~ls~~~~s~i  143 (786)
                      -|+|+..|.++.+..+
T Consensus        77 i~qg~LtL~~GK~Ge~   92 (134)
T KOG3416|consen   77 IFQGCLTLYVGKGGEV   92 (134)
T ss_pred             hhcCceEEEecCCceE
Confidence            9999999988854433

>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1)

Probab=95.77  E-value=0.053  Score=47.70  Aligned_cols=65  Identities=15%  Similarity=0.331  Sum_probs=46.9

Q ss_pred             EEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccc---------------------cccc-CCCCcE
Q psy15132         61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---------------------ETFD-ASNKPV  118 (786)
Q Consensus        61 DViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a---------------------~~~~-~~~~~V  118 (786)
                      |++|+|.++.+      +    . ....++|-|.|| .|+|.+|....                     .... ...+.+
T Consensus         1 ~ivG~V~sv~~------~----~-~~~~~tLdDgTG-~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~v   68 (92)
T cd04483           1 DILGTVVSRRE------R----E-TFYSFGVDDGTG-VVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDL   68 (92)
T ss_pred             CeEEEEEEEEe------c----C-CeEEEEEecCCc-eEEEEEEcCcCcccccccccccccccccccccccccccCCCCE
Confidence            58899988732      1    1 356899999999 89999998753                     1111 245666


Q ss_pred             EEEEeEEEeeeCCceeeeec
Q psy15132        119 IAVKAARVSEFQGGKTLSLS  138 (786)
Q Consensus       119 i~i~~~kv~~f~g~~~ls~~  138 (786)
                      +-++| +++.|+|.+.|.+.
T Consensus        69 vrV~G-~i~~frg~~ql~i~   87 (92)
T cd04483          69 LRVRG-SIRTYRGEREINAS   87 (92)
T ss_pred             EEEEE-EEeccCCeeEEEEE
Confidence            66764 89999998888764

Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.

>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1)

Probab=95.72  E-value=0.042  Score=48.36  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             eEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccc
Q psy15132        578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA  625 (786)
Q Consensus       578 DViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a  625 (786)
                      |++|+|.++.+.           .....++|.|.|| .|+|.+|....
T Consensus         1 ~ivG~V~sv~~~-----------~~~~~~tLdDgTG-~Ie~~~W~~~~   36 (92)
T cd04483           1 DILGTVVSRRER-----------ETFYSFGVDDGTG-VVNCVCWKNLS   36 (92)
T ss_pred             CeEEEEEEEEec-----------CCeEEEEEecCCc-eEEEEEEcCcC
Confidence            689999987432           1357899999999 89999998753

Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=95.64  E-value=0.068  Score=43.67  Aligned_cols=68  Identities=24%  Similarity=0.460  Sum_probs=50.4

Q ss_pred             EEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc--CCCCcEEEEEeEEEeeeCCceeeee
Q psy15132         61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKAARVSEFQGGKTLSL  137 (786)
Q Consensus        61 DViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~Vi~i~~~kv~~f~g~~~ls~  137 (786)
                      ++.|+|.++.+..+      |+  ....++|.|.+|.++++++|.+....+.  ...+.++.+. +++..|++...|.+
T Consensus         1 ~v~g~v~~~~~~~~------~~--~~~~~~l~D~~~~~i~~~~~~~~~~~~~~~~~~g~~v~v~-g~v~~~~~~~~l~~   70 (75)
T cd03524           1 TIVGIVVAVEEIRT------EG--KVLIFTLTDGTGGTIRVTLFGELAEELENLLKEGQVVYIK-GKVKKFRGRLQLIV   70 (75)
T ss_pred             CeEEEEEeeccccc------CC--eEEEEEEEcCCCCEEEEEEEchHHHHHHhhccCCCEEEEE-EEEEecCCeEEEEe
Confidence            47899988866543      32  3568899999966999999999877652  3667788887 78888876666654

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=94.91  E-value=0.19  Score=44.20  Aligned_cols=66  Identities=17%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             eEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccc----ccc-CCCCcEEEEEeEEEeeeCCcee
Q psy15132         60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE----TFD-ASNKPVIAVKAARVSEFQGGKT  134 (786)
Q Consensus        60 vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~----~~~-~~~~~Vi~i~~~kv~~f~g~~~  134 (786)
                      |.++|+|+++.+-        +   ....++|.|.|| +|++.+|.....    ... ...+.++-+.| +++.|+|.+.
T Consensus         2 v~~vG~V~~~~~~--------~---~~~~~tL~D~TG-~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G-~v~~~~g~~q   68 (95)
T cd04478           2 VTLVGVVRNVEEQ--------S---TNITYTIDDGTG-TIEVRQWLDDDNDDSSEVEPIEEGTYVRVFG-NLKSFQGKKS   68 (95)
T ss_pred             EEEEEEEEeeeEc--------c---cEEEEEEECCCC-cEEEEEeCCCCCcccccccccccCCEEEEEE-EEcccCCeeE
Confidence            6788998887432        1   356899999999 899999986643    221 24566665555 7899998888


Q ss_pred             eeec
Q psy15132        135 LSLS  138 (786)
Q Consensus       135 ls~~  138 (786)
                      |...
T Consensus        69 l~i~   72 (95)
T cd04478          69 IMAF   72 (95)
T ss_pred             EEEE
Confidence            8754

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG

Probab=94.69  E-value=0.19  Score=41.54  Aligned_cols=60  Identities=17%  Similarity=0.253  Sum_probs=41.5

Q ss_pred             EEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEec
Q psy15132        456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP  522 (786)
Q Consensus       456 ~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~  522 (786)
                      +|.|+|..... +   ..+ .++.+.+.+.|++|.|.+++|+.. ......|++|+.|.+.+ .+..
T Consensus         1 ~i~~~V~~~~~-~---~~~-~~~~~~~~~~D~~g~i~~~~F~~~-~~~~~~~~~G~~~~v~G-kv~~   60 (75)
T cd04488           1 TVEGTVVSVEV-V---PRR-GRRRLKVTLSDGTGTLTLVFFNFQ-PYLKKQLPPGTRVRVSG-KVKR   60 (75)
T ss_pred             CEEEEEEEEEe-c---cCC-CccEEEEEEEcCCCEEEEEEECCC-HHHHhcCCCCCEEEEEE-EEee
Confidence            36788875422 1   111 246899999999999999999831 12356799999998875 4433

RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)

Probab=94.35  E-value=0.19  Score=42.40  Aligned_cols=43  Identities=16%  Similarity=0.498  Sum_probs=37.5

Q ss_pred             eEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132        478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK  521 (786)
Q Consensus       478 ~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~  521 (786)
                      .++.+.|.|.+|.+.+++|++...++.+.|++|.+|.+.+ .+.
T Consensus        19 ~~~~~~l~D~tg~~~~~~f~~~~~~~~~~l~~g~~v~v~G-~v~   61 (84)
T cd04485          19 RMAFVTLEDLTGSIEVVVFPETYEKYRDLLKEDALLLVEG-KVE   61 (84)
T ss_pred             EEEEEEEEeCCCeEEEEECHHHHHHHHHHhcCCCEEEEEE-EEE
Confidence            6789999999999999999987777889999999998875 443

The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.

>PF15072 DUF4539: Domain of unknown function (DUF4539)

Probab=94.14  E-value=0.21  Score=43.25  Aligned_cols=60  Identities=23%  Similarity=0.314  Sum_probs=49.2

Q ss_pred             EEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceEEEEccccEEE
Q psy15132        480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI  545 (786)
Q Consensus       480 ~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~  545 (786)
                      ..++|.|.+|+|+|++-.+..+++.+.|..|.|..+.+..|      |.+....+-|+......+.
T Consensus        21 ~~v~l~DpTG~i~~tiH~~v~~~y~~~l~~GavLlLk~V~V------f~ps~~~~yLnIt~~Nlv~   80 (86)
T PF15072_consen   21 AFVVLKDPTGEIRGTIHRKVLEEYGDELSPGAVLLLKDVTV------FSPSPRSHYLNITLNNLVR   80 (86)
T ss_pred             eEEEEECCCCcEEEEEeHHHHhhcCCccccCEEEEEeeeeE------EecCCCccEEEEehhHeee
Confidence            57899999999999999999999999999999999999887      3344556666666554443

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=94.08  E-value=0.22  Score=43.90  Aligned_cols=60  Identities=17%  Similarity=0.345  Sum_probs=44.0

Q ss_pred             eeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc----ccc-CCCCCEEEEEeEEEeecCCc
Q psy15132        577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE----TFD-ASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       577 vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~----~~~-~~~~~vv~i~~~~V~~f~G~  649 (786)
                      |.++|+|+++...           ..+..++|.|.|| +|++.+|....+    ..+ ...|.+|.+.| +++.|+|+
T Consensus         2 v~~vG~V~~~~~~-----------~~~~~~tL~D~TG-~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G-~v~~~~g~   66 (95)
T cd04478           2 VTLVGVVRNVEEQ-----------STNITYTIDDGTG-TIEVRQWLDDDNDDSSEVEPIEEGTYVRVFG-NLKSFQGK   66 (95)
T ss_pred             EEEEEEEEeeeEc-----------ccEEEEEEECCCC-cEEEEEeCCCCCcccccccccccCCEEEEEE-EEcccCCe
Confidence            6788999886532           1457899999999 899999987543    222 45677776655 78889886

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam

>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function

Probab=93.27  E-value=0.36  Score=41.46  Aligned_cols=68  Identities=19%  Similarity=0.324  Sum_probs=50.3

Q ss_pred             EEEEEEEcccceeEEeecCCceeeEEEEEEeeccc--cEEEEEEecccccc-ccCCCCCEEEEE-eEEEeecCCc
Q psy15132        579 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKEAET-FDASNKPVIAVK-AARVSEFQGN  649 (786)
Q Consensus       579 ViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~--~~i~~tLWg~~a~~-~~~~~~~vv~i~-~~~V~~f~G~  649 (786)
                      +.|.|..+-+..+-.++ +|  ..||++.|.-+..  ..|.+.+||+.+.. +....|..|.+. +.+-++|+|+
T Consensus         2 i~Gkii~~l~~~~g~s~-~G--w~Kre~Vlet~~qYP~~i~f~~~~dk~~~l~~~~~Gd~V~Vsf~i~~RE~~gr   73 (84)
T PF11325_consen    2 ITGKIIKVLPEQQGVSK-NG--WKKREFVLETEEQYPQKICFEFWGDKIDLLDNFQVGDEVKVSFNIEGREWNGR   73 (84)
T ss_pred             cccEEEEEecCcccCcC-CC--cEEEEEEEeCCCcCCceEEEEEEcchhhhhccCCCCCEEEEEEEeeccEecce
Confidence            45776666666555555 37  9999999985554  38999999999988 557888877553 6677888876

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit

Probab=93.07  E-value=0.33  Score=40.91  Aligned_cols=54  Identities=17%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             EEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       456 ~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      .|.|-|+   .+|.  ..+  | ..-++|.|.+|+|.+++|.+...++.+.|++|+.+.+..
T Consensus         3 ~v~g~v~---~i~~--tk~--g-~~~~~L~D~~~~i~~~~f~~~~~~~~~~l~~g~~v~v~g   56 (78)
T cd04489           3 WVEGEIS---NLKR--PSS--G-HLYFTLKDEDASIRCVMWRSNARRLGFPLEEGMEVLVRG   56 (78)
T ss_pred             EEEEEEe---cCEE--CCC--c-EEEEEEEeCCeEEEEEEEcchhhhCCCCCCCCCEEEEEE
Confidence            4666666   3454  222  4 788899999999999999999999999999999988876

E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit

Probab=92.25  E-value=0.53  Score=40.15  Aligned_cols=53  Identities=21%  Similarity=0.274  Sum_probs=40.0

Q ss_pred             eeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc--ccc--CCCCCEEEEEe
Q psy15132        577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE--TFD--ASNKPVIAVKA  640 (786)
Q Consensus       577 vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~--~~~--~~~~~vv~i~~  640 (786)
                      +-+.|+|.++.     .+|+ |+.    -+.|.|.+| ++++++|.+..+  .+.  ...+.+|.++|
T Consensus         2 v~i~GiI~~v~-----~TK~-g~~----~~~leD~~G-~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g   58 (79)
T cd04490           2 VSIIGMVNDVR-----STKN-GHR----IVELEDTTG-RITVLLTKDKEELFEEAEDILPDEVIGVSG   58 (79)
T ss_pred             EEEEEEEeEEE-----EcCC-CCE----EEEEECCCC-EEEEEEeCchhhhhhhhhhccCCCEEEEEE
Confidence            34789999987     3453 653    899999999 899999999777  553  45666777766

PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit

Probab=92.23  E-value=0.51  Score=40.25  Aligned_cols=54  Identities=24%  Similarity=0.284  Sum_probs=42.9

Q ss_pred             EEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHH--HhhhhccCCcEEEEcc
Q psy15132        456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN--RFHDMIEKDKVYYISN  517 (786)
Q Consensus       456 ~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~--kf~~~l~~G~vy~is~  517 (786)
                      .+.|.|+..   | . +.+  |+. -+.|-|.+|.+.+++|++..+  ++.+.|++|.++.+..
T Consensus         3 ~i~GiI~~v---~-~-TK~--g~~-~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g   58 (79)
T cd04490           3 SIIGMVNDV---R-S-TKN--GHR-IVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSG   58 (79)
T ss_pred             EEEEEEeEE---E-E-cCC--CCE-EEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEE
Confidence            456666643   4 2 223  333 889999999999999999999  9999999999999887

PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)

Probab=91.54  E-value=1.2  Score=37.50  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=44.6

Q ss_pred             EEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc--CCCCcEEEEEeEEEeeeCCceeeee
Q psy15132         62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKAARVSEFQGGKTLSL  137 (786)
Q Consensus        62 ViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~Vi~i~~~kv~~f~g~~~ls~  137 (786)
                      ++|.|.++..   ..+|+ |+.  ...++|.|.+| ++++++|++..+.+.  ...+.++.+.| ++..|+|..++.+
T Consensus         2 i~g~v~~~~~---~~~k~-g~~--~~~~~l~D~tg-~~~~~~f~~~~~~~~~~l~~g~~v~v~G-~v~~~~~~~~l~~   71 (84)
T cd04485           2 VAGLVTSVRR---RRTKK-GKR--MAFVTLEDLTG-SIEVVVFPETYEKYRDLLKEDALLLVEG-KVERRDGGLRLIA   71 (84)
T ss_pred             EEEEEEEeEE---EEcCC-CCE--EEEEEEEeCCC-eEEEEECHHHHHHHHHHhcCCCEEEEEE-EEEecCCceEEEe
Confidence            5788877533   33443 542  46788999998 899999987643332  25566666665 7777866566654

The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.

>PRK13480 3'-5' exoribonuclease YhaM; Provisional

Probab=91.40  E-value=1.2  Score=48.31  Aligned_cols=81  Identities=22%  Similarity=0.334  Sum_probs=57.3

Q ss_pred             chhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc-CCCCcEEEEEeEEEee
Q psy15132         50 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAVKAARVSE  128 (786)
Q Consensus        50 ~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~Vi~i~~~kv~~  128 (786)
                      .|.++..+..++.+..|++..--   ++| +|+.  -..++|.|.|| +|+..+|+..-+... ...+.||-++| +|.+
T Consensus         4 ~i~~l~~g~~v~~~~lv~~~~~~---~~k-nG~~--yl~l~l~D~tG-~I~ak~W~~~~~~~~~~~~g~vv~v~G-~v~~   75 (314)
T PRK13480          4 GIEELEVGEQVDHFLLIKSATKG---VAS-NGKP--FLTLILQDKSG-DIEAKLWDVSPEDEATYVPETIVHVKG-DIIN   75 (314)
T ss_pred             hHhhcCCCCEeeEEEEEEEceee---ecC-CCCe--EEEEEEEcCCc-EEEEEeCCCChhhHhhcCCCCEEEEEE-EEEE
Confidence            34555668889999998886321   234 4653  56899999999 999999996533322 25667776766 6779


Q ss_pred             eCCceeeeec
Q psy15132        129 FQGGKTLSLS  138 (786)
Q Consensus       129 f~g~~~ls~~  138 (786)
                      |+|..++.+.
T Consensus        76 y~g~~Ql~i~   85 (314)
T PRK13480         76 YRGRKQLKVN   85 (314)
T ss_pred             ECCcceEEEE
Confidence            9998777654

>PRK13480 3'-5' exoribonuclease YhaM; Provisional

Probab=91.07  E-value=0.63  Score=50.48  Aligned_cols=70  Identities=13%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             eecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       444 ~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      .|++|.++. .......|..+ .+|.   ++.....+.++|.|.+|+|.|.+|+.. +.....+++|+++.+.+-.
T Consensus         4 ~i~~l~~g~-~v~~~~lv~~~-~~~~---~knG~~yl~l~l~D~tG~I~ak~W~~~-~~~~~~~~~g~vv~v~G~v   73 (314)
T PRK13480          4 GIEELEVGE-QVDHFLLIKSA-TKGV---ASNGKPFLTLILQDKSGDIEAKLWDVS-PEDEATYVPETIVHVKGDI   73 (314)
T ss_pred             hHhhcCCCC-EeeEEEEEEEc-eeee---cCCCCeEEEEEEEcCCcEEEEEeCCCC-hhhHhhcCCCCEEEEEEEE
Confidence            578888875 33434444443 2233   222236899999999999999999964 4567889999999888743

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)

Probab=90.66  E-value=0.77  Score=38.82  Aligned_cols=43  Identities=14%  Similarity=0.318  Sum_probs=36.1

Q ss_pred             eEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEec
Q psy15132        478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP  522 (786)
Q Consensus       478 ~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~  522 (786)
                      .++.+.|.|.+|.|.+++|++.. .+...|++|.++.+. +.|..
T Consensus        19 ~~~~~~l~D~tg~i~~~~f~~~~-~~~~~l~~g~~v~v~-G~v~~   61 (83)
T cd04492          19 PYLALTLQDKTGEIEAKLWDASE-EDEEKFKPGDIVHVK-GRVEE   61 (83)
T ss_pred             cEEEEEEEcCCCeEEEEEcCCCh-hhHhhCCCCCEEEEE-EEEEE
Confidence            68999999999999999999654 447889999999998 55643

Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.

>PTZ00401 aspartyl-tRNA synthetase; Provisional

Probab=89.79  E-value=2.4  Score=49.68  Aligned_cols=99  Identities=23%  Similarity=0.248  Sum_probs=71.0

Q ss_pred             CceeeecccCCCC---CceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEc-c----hhHHHhhhhccCCc
Q psy15132        440 VQTHPIVSLSPYQ---NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF-N----DECNRFHDMIEKDK  511 (786)
Q Consensus       440 ~~~~~I~~L~p~~---~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~-~----~~~~kf~~~l~~G~  511 (786)
                      ...+.|++|++..   ...+|+|||.++   |      ..|++.=++|.|.+|.|++++- +    ...-+|...|..|+
T Consensus        63 ~~~~~i~~l~~~~~~g~~V~v~Grv~~~---R------~~Gk~~Fl~LRd~~~~iQ~v~~~~~~~~~~~~~~~~~l~~es  133 (550)
T PTZ00401         63 RTFIPVAVLSKPELVDKTVLIRARVSTT---R------KKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTES  133 (550)
T ss_pred             CceEEHHHCCccccCCCEEEEEEEEEEE---e------cCCCeEEEEEEeCCcCEEEEEECCCccCHHHHHHHhcCCCCC
Confidence            4679999998654   457899999843   3      2367777889999999999983 2    23345667799999


Q ss_pred             EEEEcceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132        512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       512 vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~  547 (786)
                      ++.+.+.-+++..+.-+.....+||....-..+.++
T Consensus       134 iV~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a  169 (550)
T PTZ00401        134 IVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTES  169 (550)
T ss_pred             EEEEEEEEEecCccCCCCCCccEEEEeeEEEEEeCC
Confidence            999999655543322234567899998876666555

>PRK05813 single-stranded DNA-binding protein; Provisional

Probab=89.31  E-value=16  Score=37.54  Aligned_cols=158  Identities=16%  Similarity=0.196  Sum_probs=91.9

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEE-----EcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDL-----LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK  526 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L-----~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~  526 (786)
                      .++..+.||+++-..+|+-  ..|++ +..|.|     .|+..-|.+++|..+++...  |..|+-+.+.+ +++..+..
T Consensus         8 ~NkV~L~Grl~~d~e~~~~--~~G~~-~~~f~laV~R~s~~~D~i~v~v~~rlae~~~--l~kG~~v~VeG-qlrsy~~~   81 (219)
T PRK05813          8 NNKVYLEGKVVSELEFSHE--MYGEG-FYNFKLEVPRLSDSKDILPVTVSERLLAGMD--LKVGTLVIVEG-QLRSYNKF   81 (219)
T ss_pred             cCEEEEEEEEcCCceEEEE--eCCeE-EEEEEEEeeccCCCccEEEEEEEhhhhhhhc--ccCCCEEEEEE-EEEEeccC
Confidence            4678999999987777662  23443 333433     34555699999999998766  99999998886 33322111


Q ss_pred             ccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEE
Q psy15132        527 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDI  606 (786)
Q Consensus       527 y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i  606 (786)
                       ....+.|.+.+--. .|+.++...               +   ......|-++|.+..=-.+.  .+. +|+++.  .+
T Consensus        82 -~~G~~R~vl~V~a~-~i~~l~~~~---------------~---~~~~N~V~LiGrL~~DPelR--~t~-~G~~va--~f  136 (219)
T PRK05813         82 -IDGKNRLILTVFAR-NIEYCDERS---------------D---IKNPNEIFLDGYICKEPVYR--TTP-FGREIA--DL  136 (219)
T ss_pred             -CCCcEEEEEEEEEE-EEEEccCCC---------------c---cCCccEEEEEEEccCCCeEE--ECC-CCCEEE--EE
Confidence             01234454444321 233332221               0   01234577889887642222  223 366544  34


Q ss_pred             EEeecc----ccEEEEEEecccccccc-CCCCCEEEEEe
Q psy15132        607 TLVDQS----QASVTMTLWGKEAETFD-ASNKPVIAVKA  640 (786)
Q Consensus       607 ~l~D~s----~~~i~~tLWg~~a~~~~-~~~~~vv~i~~  640 (786)
                      .|+=..    ..-|+|++||..|+... ...|.-|++.|
T Consensus       137 ~lAvnr~~~~td~i~~v~wg~~Ae~~~~l~KG~~V~V~G  175 (219)
T PRK05813        137 LLAVNRPYNKSDYIPCIAWGRNARFCKTLEVGDNIRVWG  175 (219)
T ss_pred             EEEEcCCCCCceEEEEEEEhHHhHHHhhCCCCCEEEEEE
Confidence            444221    23799999999997543 46677777765

>PRK06751 single-stranded DNA-binding protein; Provisional

Probab=88.94  E-value=2.5  Score=41.69  Aligned_cols=68  Identities=15%  Similarity=0.302  Sum_probs=51.6

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC----c-EEEEEcchhHHHhhhhccCCcEEEEcc-eE
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG----E-IRATMFNDECNRFHDMIEKDKVYYISN-CT  519 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G----~-I~at~~~~~~~kf~~~l~~G~vy~is~-~~  519 (786)
                      ++...|.+||++--.+|...+  | ..+.++.|+      ++.|    + |.+++|+.+++.+...|+.|+-+.|.+ .+
T Consensus         2 mN~V~LiGrL~~DpelR~t~s--G-~~v~~fslAvnr~~~~~~ge~~tdwi~~v~wgk~Ae~~~~~l~KG~~V~VeGrL~   78 (173)
T PRK06751          2 MNRVILVGRLTKDPDLRYTPN--G-VAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQ   78 (173)
T ss_pred             ceEEEEEEEECCCCcEEECCC--C-CEEEEEEEEEccceecCCCCEEEEEEEEEEeCcHHHHHHHHcCCCCEEEEEEEEE
Confidence            467899999999888885432  2 356677664      3334    3 999999999999999999999999987 34


Q ss_pred             Eec
Q psy15132        520 LKP  522 (786)
Q Consensus       520 V~~  522 (786)
                      ...
T Consensus        79 ~r~   81 (173)
T PRK06751         79 TRN   81 (173)
T ss_pred             eCc
Confidence            433

>KOG4757|consensus

Probab=88.32  E-value=1.5  Score=48.15  Aligned_cols=82  Identities=12%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             eecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEe--CCCCEEEEEecccccccccC--CCCcEE
Q psy15132         44 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD--QSQASVTMTLWGKEAETFDA--SNKPVI  119 (786)
Q Consensus        44 ~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D--~s~~~i~~tLWg~~a~~~~~--~~~~Vi  119 (786)
                      +|..+.+-.. ..+..|+++|+|++.+|..+-.    |+. ....+.|+|  .|+..+.|-|+....+++..  +.|++|
T Consensus         8 k~Iri~da~k-k~~tiVNl~GiVkef~pp~qs~----g~D-~~~tv~IvDp~~ss~gLtv~lfSkt~edLP~Ik~~GDii   81 (522)
T KOG4757|consen    8 KLIRISDALK-KKNTIVNLIGIVKEFTPPRQSL----GKD-WVCTVYIVDPDYSSIGLTVHLFSKTGEDLPVIKQVGDII   81 (522)
T ss_pred             heeechHHHH-hcCcEEEEEEEEEeccChhhcc----CCc-eEEEEEEeCCCCCCCCcEEEEecCchhhCccccccCcEE
Confidence            4444444332 3578999999999999886532    443 467899999  78888999999999988864  789999


Q ss_pred             EEEeEEEeeeCC
Q psy15132        120 AVKAARVSEFQG  131 (786)
Q Consensus       120 ~i~~~kv~~f~g  131 (786)
                      .+...|+.-|+.
T Consensus        82 llhRiKiq~y~~   93 (522)
T KOG4757|consen   82 LLHRIKIQSYRD   93 (522)
T ss_pred             EEEEEEEEEhhh
Confidence            999999998863

>PF15489 CTC1: CST, telomere maintenance, complex subunit CTC1

Probab=88.14  E-value=63  Score=40.64  Aligned_cols=288  Identities=13%  Similarity=0.152  Sum_probs=145.6

Q ss_pred             CCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC--cEEEEEcchhHHHhhhhccCCcEEEEcce-----EEec
Q psy15132        450 PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG--EIRATMFNDECNRFHDMIEKDKVYYISNC-----TLKP  522 (786)
Q Consensus       450 p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G--~I~at~~~~~~~kf~~~l~~G~vy~is~~-----~V~~  522 (786)
                      +-...+.+.|..++.+.... ....+.|.  --...|+..  ++-..|.+.. -+|++.|++|.||.+---     .|-.
T Consensus       702 ~~~~tlsF~~~g~wlGg~q~-~eg~~~~~--~e~~~~~~~~~kVlLlF~G~s-vrWF~fLhpg~vYRLva~~~~~p~l~~  777 (1144)
T PF15489_consen  702 VPKPTLSFQVSGSWLGGTQR-KEGTGWGP--PEPLEDENKDQKVLLLFLGSS-VRWFPFLHPGQVYRLVAPNSPDPMLFG  777 (1144)
T ss_pred             cCCCceEEEEEEEEecceEe-ccCcccCC--CCcCcccCCCceEEEEEecCc-eeeEeEecCCcEEEEecCCCCCceeec
Confidence            33456889999888877655 11111122  111223332  4666665665 499999999999987532     1100


Q ss_pred             cCC--c--ccccCCceEEEEccccEEEEccCCCCCCCCcce-----eeccCccccccc-CCCceeeEEEEEEEcccceeE
Q psy15132        523 ANK--K--FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-----YCFVPLKTIAEI-SPDENIDVLGVCIDAAELSSV  592 (786)
Q Consensus       523 a~~--~--y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~-----~~f~~i~dl~~~-~~~~~vDViGvV~~V~~~~~i  592 (786)
                      +..  +  --...-.-.+++..+=.++.... .  ++|..-     ..-.++.|+... ..+..|.+-|+|.+-.-.+..
T Consensus       778 ~s~~s~r~l~~~~~~scl~vq~~W~le~~~~-~--d~~~~l~~~~~~~~ssl~~lls~s~s~sLVSFs~~I~srt~ce~~  854 (1144)
T PF15489_consen  778 SSCVSQRPLELAGCPSCLTVQDDWTLELESS-Q--DIPPVLRISKLLPESSLSELLSSSSSDSLVSFSAEILSRTLCEPL  854 (1144)
T ss_pred             CCCcccccccccCCCccEEeCCCceeccccc-c--cchhhhhhcccCccccHHHHhccCCCCceEEEEEEEEEeeeccCC
Confidence            000  0  00001122233332222222211 1  344321     223466777765 468899999999886433221


Q ss_pred             E----eecCCcee------eEEEEEEeeccccEEEEEEeccccc-ccc--CCCCCEEEEEeE--EEeecCCc-c------
Q psy15132        593 T----GKTNQKTY------MKRDITLVDQSQASVTMTLWGKEAE-TFD--ASNKPVIAVKAA--RVSEFQGN-L------  650 (786)
Q Consensus       593 ~----~k~~g~~~------~kr~i~l~D~s~~~i~~tLWg~~a~-~~~--~~~~~vv~i~~~--~V~~f~G~-L------  650 (786)
                      .    .+..+...      ...-+++.|-.+. -.+.+.-+..- -+.  .-+|.+|.|.+.  ||+-+++. .      
T Consensus       855 ~~~~~~~~~~~~~~~~~vkltv~L~v~D~~~p-~~ldVYi~~~h~p~plGLLPGA~V~f~~lerkVSRs~nVYC~~~psS  933 (1144)
T PF15489_consen  855 NARRWSKPGNAIASRGCVKLTVALTVADCESP-PHLDVYIEDPHLPYPLGLLPGARVLFSQLERKVSRSHNVYCCFLPSS  933 (1144)
T ss_pred             ccccccCCCCCcccccccceEEEEEEecCCCC-CeEEEEecCCCCCCcccccCCceeeeehhhhhhhccCcEEEEEcCCc
Confidence            1    11111111      1123444555441 11333332211 111  356778888765  55555443 1      


Q ss_pred             ----ccHHhHHh-----------hcCCCCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCC----C
Q psy15132        651 ----LLMREIQD-----------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK----C  711 (786)
Q Consensus       651 ----~ti~e~~~-----------~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~----C  711 (786)
                          .++.+-..           +.++....+-.+.+.+.|+.|..-. .-..|.  .|..-..   .|  +|..    |
T Consensus       934 ~VtVlS~p~~t~~~~~~P~~~L~~~~~~~~~~~~a~~~chVV~V~~l~-L~WvCa--~C~si~~---qg--~Csr~~p~C 1005 (1144)
T PF15489_consen  934 SVTVLSFPPETNVSPPLPHIYLAELLQGSQSPFQARVSCHVVSVLSLQ-LQWVCA--HCGSICP---QG--RCSRQSPPC 1005 (1144)
T ss_pred             eEEEEecCcccCCCCCCCeEEehhhhCCCCCCceEEEEEEEEEEEEEE-eeehhh--hccCccc---CC--cCCCCCCCC
Confidence                11111000           0111122333567778888875421 234666  5665222   23  3643    4


Q ss_pred             CCcCCceeEEEEEEEEEEecCCcEEEEEehhhHHHHhCCChHHH
Q psy15132        712 NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV  755 (786)
Q Consensus       712 ~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~llG~sa~el  755 (786)
                      ...  ....+=..++.+.|+||++.+++-++....++|.+..|-
T Consensus      1006 ~s~--~sV~qA~ar~~vEDGTaeA~v~~~~~~V~~lLgL~~~eW 1047 (1144)
T PF15489_consen 1006 PSQ--TSVFQASARLLVEDGTAEAVVWCRGHHVAALLGLSPSEW 1047 (1144)
T ss_pred             CCC--cceeeEEEEEEEecCCeeEEEEECCcHHHHHhCCCHHHH
Confidence            332  223455677889999999999999999999999998864

>KOG0851|consensus

Probab=87.93  E-value=0.71  Score=48.07  Aligned_cols=137  Identities=15%  Similarity=0.223  Sum_probs=83.1

Q ss_pred             ccccccCCCcCCCCCeEEEEccCcEEEEccCCCCCCCCce-eEeecCccchhc--cCCCCceEEEE-EEEEeccceeEee
Q psy15132          2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV-KYCFVPLKTIAE--ISPDENIDVLG-VCIDAAELSSVTG   77 (786)
Q Consensus         2 ~v~~A~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~-~~~f~~~~~i~~--~~~~~~vDViG-vV~~v~~~~~i~~   77 (786)
                      .|.++...++.+.|+|++.|.+.+.+...+.    ..|-. .++|.++..+.+  .....++|++| .+..++.+..-..
T Consensus        78 ~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~v~~~~~~~~  153 (246)
T KOG0851|consen   78 GVNPNSGQVRATTHSFKINFMDFTVVTSSDT----RLPCTPWGKFTPFDSIVEDKSDKRVLVDLIGVAVYDVSQLTVTPA  153 (246)
T ss_pred             eecccccceeeeeeEEEEEeccceeeccCCC----CccceeccccchhhhhhccccCCcEEEEeeceeEEEeeeeEeccc
Confidence            4667788888899999999988777776543    22222 568888866653  45667899999 6777765543222


Q ss_pred             ccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHh
Q psy15132         78 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQG  157 (786)
Q Consensus        78 k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~  157 (786)
                        .+.....+.+...+.++       |     ... +.-.+.+.++..+.+| + +. .....+.+..+|+   +...+.
T Consensus       154 --~~~~~~~~~~~~~~~~~-------~-----~~~-~~~~~c~~~~~~~~~~-~-~~-~~l~~~~~~~~~~---l~~~~~  212 (246)
T KOG0851|consen  154 --IDTDVDGFYLTFKICNK-------S-----KFS-KPVLWCEACGEQATDF-G-RK-RSLGGGVIVIAPE---LLFWKI  212 (246)
T ss_pred             --ccCCcceEEEEEeeccc-------c-----ccc-CceEEehhhcchHHhh-h-hh-eEecCCcEEccch---heeecc
Confidence              24567777777777765       0     000 1112333555566777 3 33 4455666777776   333344


Q ss_pred             hhhccC
Q psy15132        158 WFSTQT  163 (786)
Q Consensus       158 w~~~~~  163 (786)
                      |....|
T Consensus       213 ~~~~~G  218 (246)
T KOG0851|consen  213 WRYFDG  218 (246)
T ss_pred             cccccC
Confidence            444433

>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function

Probab=87.83  E-value=3.6  Score=35.44  Aligned_cols=68  Identities=19%  Similarity=0.301  Sum_probs=48.4

Q ss_pred             EEEEEEEeccceeEeeccCCceeeEEEEEEEeCCC--CEEEEEeccccccc-ccCCCCcEEEE-EeEEEeeeCCc
Q psy15132         62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKEAET-FDASNKPVIAV-KAARVSEFQGG  132 (786)
Q Consensus        62 ViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~--~~i~~tLWg~~a~~-~~~~~~~Vi~i-~~~kv~~f~g~  132 (786)
                      +-|.|..+-+.++-.++ +|  ..||++.|.-...  ..|.+.+||+.+.. +....|..|-+ -+.+-.+|+|.
T Consensus         2 i~Gkii~~l~~~~g~s~-~G--w~Kre~Vlet~~qYP~~i~f~~~~dk~~~l~~~~~Gd~V~Vsf~i~~RE~~gr   73 (84)
T PF11325_consen    2 ITGKIIKVLPEQQGVSK-NG--WKKREFVLETEEQYPQKICFEFWGDKIDLLDNFQVGDEVKVSFNIEGREWNGR   73 (84)
T ss_pred             cccEEEEEecCcccCcC-CC--cEEEEEEEeCCCcCCceEEEEEEcchhhhhccCCCCCEEEEEEEeeccEecce
Confidence            45776666666655555 36  8999999985443  48999999999998 45566765544 45677888754

>KOG4757|consensus

Probab=87.59  E-value=1.6  Score=47.95  Aligned_cols=72  Identities=14%  Similarity=0.298  Sum_probs=58.1

Q ss_pred             CCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEee--ccccEEEEEEecccccccc--CCCCCEEEEEeEEEeecCC
Q psy15132        573 PDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD--QSQASVTMTLWGKEAETFD--ASNKPVIAVKAARVSEFQG  648 (786)
Q Consensus       573 ~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D--~s~~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~V~~f~G  648 (786)
                      .+..|+++|+|++.+|...-  +  |+.. ...+.|+|  .|+..+.|-|+....+++.  .+.|.+|.+...++.-|+.
T Consensus        19 ~~tiVNl~GiVkef~pp~qs--~--g~D~-~~tv~IvDp~~ss~gLtv~lfSkt~edLP~Ik~~GDiillhRiKiq~y~~   93 (522)
T KOG4757|consen   19 KNTIVNLIGIVKEFTPPRQS--L--GKDW-VCTVYIVDPDYSSIGLTVHLFSKTGEDLPVIKQVGDIILLHRIKIQSYRD   93 (522)
T ss_pred             cCcEEEEEEEEEeccChhhc--c--CCce-EEEEEEeCCCCCCCCcEEEEecCchhhCccccccCcEEEEEEEEEEEhhh
Confidence            57899999999999987532  2  4433 45789999  6777899999999998887  4789999999999988765


Q ss_pred             c
Q psy15132        649 N  649 (786)
Q Consensus       649 ~  649 (786)
                      +
T Consensus        94 r   94 (522)
T KOG4757|consen   94 R   94 (522)
T ss_pred             h
Confidence            4

>PF14951 DUF4503: Domain of unknown function (DUF4503)

Probab=87.36  E-value=1.6  Score=46.93  Aligned_cols=98  Identities=23%  Similarity=0.422  Sum_probs=73.7

Q ss_pred             eEEEEEEEEEEecCceE-EeCCCCccccc-ccc--ccCCceeeeCCCCCcCCceeEEEEEEEEEEec---CCcEEEEEeh
Q psy15132        669 YCSVRGIIQVFRGSNTT-YKACPSQDCNK-KVI--DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW---TNSVWVTLFQ  741 (786)
Q Consensus       669 ~~~v~a~I~~i~~~~~~-Y~aC~~~~C~k-kv~--~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~---Tg~~~~~~F~  741 (786)
                      ...|.|+|+.++.+..| ++.|.  .|+. |+.  .++.|.|.|..|.+....|.-|.-|.+-+.=.   -.++.+-+..
T Consensus       256 iCsvqG~VvgVdE~TAfSWPvCd--~CGn~rLe~~pe~rg~~~C~~Cs~~V~sP~~r~~LeVfl~Cps~p~ctvKVKL~q  333 (389)
T PF14951_consen  256 ICSVQGTVVGVDESTAFSWPVCD--RCGNGRLEQSPEDRGAFSCGDCSRVVTSPVLRMHLEVFLDCPSRPQCTVKVKLLQ  333 (389)
T ss_pred             eEEEeeEEEEecCcccccCcccc--ccCCccceeCccCCCceeccchhhhccCcceeeeEEEEEeCCCCCCceEEEEEhH
Confidence            57999999999887554 79998  6864 442  24568899999999999999998888877733   2467889999


Q ss_pred             hhHHHHhCCChHHHhccccChHHHHHhcCCeE
Q psy15132        742 NEAESILGVTAQEVGESTEDHPALKKALFTQY  773 (786)
Q Consensus       742 ~~ae~llG~sa~el~~~~~~~~~~~~~~~k~~  773 (786)
                      +.-..||.-+|.|     +....+++++||+-
T Consensus       334 ~sIsslL~~aa~e-----dg~Yev~sVLGkev  360 (389)
T PF14951_consen  334 RSISSLLMSAASE-----DGSYEVKSVLGKEV  360 (389)
T ss_pred             HHHHHHHhhhhcc-----CCceehhhhhcccc
Confidence            8888888877665     22236666666653

>PF14951 DUF4503: Domain of unknown function (DUF4503)

Probab=87.27  E-value=1.7  Score=46.74  Aligned_cols=101  Identities=24%  Similarity=0.407  Sum_probs=75.4

Q ss_pred             CCcEEEEEEEEEEEecC-ceEEeCCCCCCCCc-cee--eCCCceeecccCCCcCCceeEeeeeeEEEEec---CCcEEEE
Q psy15132        201 KADYCSVRGIIQVFRGS-NTTYKACPSQDCNK-KVI--DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW---TNSVWVT  273 (786)
Q Consensus       201 ~~~~~~v~a~I~~i~~~-~~~Y~aC~~~~C~k-Kv~--~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~---Tg~~~~~  273 (786)
                      .+..+.|.|+|..++.+ .+.+|.|.  .|+. |+.  .++.|.|+|..|.+.+..|.-|..|.+-+.=.   -.+.++-
T Consensus       253 vNSiCsvqG~VvgVdE~TAfSWPvCd--~CGn~rLe~~pe~rg~~~C~~Cs~~V~sP~~r~~LeVfl~Cps~p~ctvKVK  330 (389)
T PF14951_consen  253 VNSICSVQGTVVGVDESTAFSWPVCD--RCGNGRLEQSPEDRGAFSCGDCSRVVTSPVLRMHLEVFLDCPSRPQCTVKVK  330 (389)
T ss_pred             CcceEEEeeEEEEecCcccccCcccc--ccCCccceeCccCCCceeccchhhhccCcceeeeEEEEEeCCCCCCceEEEE
Confidence            35679999999999976 57899999  9975 454  24678899999999999999999999877512   2366788


Q ss_pred             eehHHHHHHhCCChhhhhccCCChHHHHHhcCCEE
Q psy15132        274 LFQNEAESILGVTAQEVGESTEDHPALKKALFTQY  308 (786)
Q Consensus       274 ~F~~~a~~ilg~sa~el~~~~e~~~~~~~~~~k~~  308 (786)
                      +....-..||...|.|=.     .-+.+..+||+.
T Consensus       331 L~q~sIsslL~~aa~edg-----~Yev~sVLGkev  360 (389)
T PF14951_consen  331 LLQRSISSLLMSAASEDG-----SYEVKSVLGKEV  360 (389)
T ss_pred             EhHHHHHHHHhhhhccCC-----ceehhhhhcccc
Confidence            888888888877765511     123556666654

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)

Probab=86.12  E-value=3.9  Score=34.36  Aligned_cols=68  Identities=24%  Similarity=0.305  Sum_probs=42.1

Q ss_pred             EEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccc-cCCCCcEEEEEeEEEeeeCCceeeee
Q psy15132         62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-DASNKPVIAVKAARVSEFQGGKTLSL  137 (786)
Q Consensus        62 ViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~-~~~~~~Vi~i~~~kv~~f~g~~~ls~  137 (786)
                      .+.+|.++.   ...+|+ |+  ....++|.|.+| .+++++|++.-... ....+.++.+. +++..|+|...+..
T Consensus         2 ~~~~v~~~~---~~~tk~-g~--~~~~~~l~D~tg-~i~~~~f~~~~~~~~~l~~g~~v~v~-G~v~~~~~~~~l~~   70 (83)
T cd04492           2 GFFLIKSKE---LRTAKN-GK--PYLALTLQDKTG-EIEAKLWDASEEDEEKFKPGDIVHVK-GRVEEYRGRLQLKI   70 (83)
T ss_pred             cEEEEEEee---eecccC-CC--cEEEEEEEcCCC-eEEEEEcCCChhhHhhCCCCCEEEEE-EEEEEeCCceeEEE
Confidence            344555553   233443 44  356899999998 89999999654221 12455566565 57777866555553

Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.

>PRK08182 single-stranded DNA-binding protein; Provisional

Probab=86.06  E-value=4.2  Score=39.10  Aligned_cols=71  Identities=8%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             CCceEEEEEEeecCCcceecCCCC-CceEEEEEEE------cCCC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLL------DESG-------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~------D~~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      ++.+.|.||+..--.+|...+... .-.+.++.|+      +++|       . +.+++|+.+++.+...|+.|+-+.+.
T Consensus         2 ~N~V~LiGrLg~DPElr~t~~G~~~~~~va~fslA~~r~~~~~~Ge~~~~~t~w~~V~~wg~~Ae~v~~~l~KG~~V~V~   81 (148)
T PRK08182          2 STHFVGEGNIGSAPEYREFPNGNDEPRRLLRLNVYFDNPVPTKDGEYEDRGGFWAPVELWHRDAEHWARLYQKGMRVLVE   81 (148)
T ss_pred             ccEEEEEEECCCCCeEEECCCCCeeeeeEEEEEEEecCceECCCCCEEecCcEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence            467899999998888887754110 0137888885      3333       2 88999999999999999999999998


Q ss_pred             c-eEEec
Q psy15132        517 N-CTLKP  522 (786)
Q Consensus       517 ~-~~V~~  522 (786)
                      + .+...
T Consensus        82 GrL~~~~   88 (148)
T PRK08182         82 GRMERDE   88 (148)
T ss_pred             EEEEecc
Confidence            7 34433

>PRK02801 primosomal replication protein N; Provisional

Probab=85.99  E-value=3.5  Score=36.90  Aligned_cols=66  Identities=9%  Similarity=0.067  Sum_probs=51.7

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC-----CCc-------EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-----SGE-------IRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~-----~G~-------I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      +++..+.||+++..++|.-.+  | ..+.+|.|+=+     .|-       |.+++|+..++.+...|..|+.+.++++-
T Consensus         2 mN~v~L~Grl~~dpelr~Tp~--G-~~v~~f~La~~~~~~ea~~~r~~~~~i~~va~G~~Ae~~~~~l~kGs~v~V~G~L   78 (101)
T PRK02801          2 TNRLVLSGTVCRTPKRKVSPS--G-IPHCQFVLEHRSVQEEAGLHRQAWCRMPVIVSGNQFQAITQSITVGSKITVQGFI   78 (101)
T ss_pred             ccEEEEEEEECcCcceEECCC--C-CeEEEEEEEEeCeEecCCCceeEEEEEEEEEEcHHHHHHHhhcCCCCEEEEEEEE
Confidence            467889999999999987632  2 35666665432     232       99999999999999999999999999975


Q ss_pred             E
Q psy15132        520 L  520 (786)
Q Consensus       520 V  520 (786)
                      -
T Consensus        79 ~   79 (101)
T PRK02801         79 S   79 (101)
T ss_pred             E
Confidence            4

>PRK05733 single-stranded DNA-binding protein; Provisional

Probab=85.81  E-value=6.1  Score=38.99  Aligned_cols=64  Identities=23%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             CCCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      +++...|.|||..--.+|...+  | ..+.+|.|+      |. .|      + +.+++|+..++.+...|+.|+.++|.
T Consensus         4 ~mNkV~LiGrlg~DPElr~t~n--G-~~va~fsVAv~~~~k~~~~Ge~~e~T~w~~Vv~fgk~Ae~v~~~l~KGs~V~Ve   80 (172)
T PRK05733          4 GVNKVILVGTCGQDPEVRYLPN--G-NAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE   80 (172)
T ss_pred             cceEEEEEEEecCCCEEEECCC--C-CEEEEEEEEEcCccccCCCCcccccceEEEEEEehHHHHHHHHHhCCCCEEEEE
Confidence            3578899999998777887644  2 256666654      22 24      2 99999999999999999999999998


Q ss_pred             c
Q psy15132        517 N  517 (786)
Q Consensus       517 ~  517 (786)
                      +
T Consensus        81 G   81 (172)
T PRK05733         81 G   81 (172)
T ss_pred             E
Confidence            7

>PRK07274 single-stranded DNA-binding protein; Provisional

Probab=85.75  E-value=4.7  Score=37.92  Aligned_cols=63  Identities=16%  Similarity=0.269  Sum_probs=48.8

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC----c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG----E-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G----~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      ++...|.||+..--.+|...+  | ..+.++.|+      |+.|    + +++++|+.+++.+...|+.|+-+.+.+
T Consensus         2 mN~v~LiGrL~~dPelr~t~~--g-~~~~~fslAv~~~~k~~~g~~~t~w~~v~~fg~~Ae~v~~~l~KG~~V~V~G   75 (131)
T PRK07274          2 YNKVILIGRLTATPELVKTAN--D-KSVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDG   75 (131)
T ss_pred             eeEEEEEEEccCCCeEEECCC--C-CEEEEEEEEEcCceecCCCCEEEEEEEEEEehHHHHHHHHHcCCCCEEEEEE
Confidence            467899999998877775432  2 256666665      4445    3 899999999999999999999999887

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit

Probab=85.64  E-value=5.5  Score=33.31  Aligned_cols=65  Identities=20%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             EEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccC--CCCcEEEEEe-EEEeeeCCceeeee
Q psy15132         62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKA-ARVSEFQGGKTLSL  137 (786)
Q Consensus        62 ViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~--~~~~Vi~i~~-~kv~~f~g~~~ls~  137 (786)
                      |.|.|.++..     +|+ |    .--++|.|.++ ++++++|.+....+..  ..+.+|.+.+ ....+|+|+..|.+
T Consensus         4 v~g~v~~i~~-----tk~-g----~~~~~L~D~~~-~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v   71 (78)
T cd04489           4 VEGEISNLKR-----PSS-G----HLYFTLKDEDA-SIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIV   71 (78)
T ss_pred             EEEEEecCEE-----CCC-c----EEEEEEEeCCe-EEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECCCCEEEEEE
Confidence            6777777642     332 4    45689999987 9999999997766543  4555555555 23334445555543

E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.

>PRK07373 DNA polymerase III subunit alpha; Reviewed

Probab=85.51  E-value=2.1  Score=48.93  Aligned_cols=71  Identities=17%  Similarity=0.245  Sum_probs=52.7

Q ss_pred             eeecccC--CCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        443 HPIVSLS--PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       443 ~~I~~L~--p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      .++++|.  +......|-|-|+..   |.....+|+ .+.-+.|-|.+|.|.+++|.+..+++.+.|++|.++.|.+
T Consensus       269 ~~~~~l~~~~~~~~v~vaG~I~~i---k~~~TKkG~-~maf~~leD~tG~ie~vvFp~~y~~~~~~l~~~~~v~v~G  341 (449)
T PRK07373        269 INLSELEEQKEKTKVSAVVMLNEV---KKIVTKKGD-PMAFLQLEDLSGQSEAVVFPKSYERISELLQVDARLIIWG  341 (449)
T ss_pred             cCHHHHhcccCCCEEEEEEEEEEe---EecccCCCC-EEEEEEEEECCCCEEEEECHHHHHHHHHHhccCCEEEEEE
Confidence            3566654  223456777888754   444333332 5566789999999999999999999999999999999866

>PRK07275 single-stranded DNA-binding protein; Provisional

Probab=85.21  E-value=3.2  Score=40.50  Aligned_cols=63  Identities=13%  Similarity=0.266  Sum_probs=50.3

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC----c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG----E-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G----~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      ++...|.+|+++--.+|...+  | ..+.++.|+      ++.|    + |++++|+..++.+...|+.|+-+.|.+
T Consensus         2 ~N~v~LiGrL~~DPElr~t~s--G-~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk~Ae~~~~~l~KG~~V~VeG   75 (162)
T PRK07275          2 INNVVLVGRMTRDAELRYTPS--N-VAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTG   75 (162)
T ss_pred             eeEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceecCCCCEeeeEEEEEEEcHHHHHHHHHcCCCCEEEEEE
Confidence            367789999998888887643  2 266777765      4445    3 999999999999999999999999887

>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS)

Probab=85.10  E-value=11  Score=33.46  Aligned_cols=83  Identities=20%  Similarity=0.285  Sum_probs=54.0

Q ss_pred             eEEEEEEeecCCcceecCCCCCc-eEEEEEEEcCCCcEEEEEcchh------HHHhhhhccCCcEEEEcceEEeccCCcc
Q psy15132        455 WTIKARVTNKTPIREWNNARGSG-KLFSIDLLDESGEIRATMFNDE------CNRFHDMIEKDKVYYISNCTLKPANKKF  527 (786)
Q Consensus       455 w~I~~RV~~k~~~r~~~~~~~~g-~~~~~~L~D~~G~I~at~~~~~------~~kf~~~l~~G~vy~is~~~V~~a~~~y  527 (786)
                      .+|+|||.++   |.      .| ++.=++|.|.+|.|++++-...      .-++...|..|+++.+.+--.+. .+..
T Consensus         2 V~i~Gwv~~~---R~------~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~-~~~~   71 (102)
T cd04320           2 VLIRARVHTS---RA------QGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKP-EEPI   71 (102)
T ss_pred             EEEEEEEEEe---ec------CCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECC-CCcc
Confidence            4788888843   33      35 6667789999999999986432      22333568999999999964432 2111


Q ss_pred             cc-cCCceEEEEccccEEEEc
Q psy15132        528 SS-INNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       528 ~~-~~~~yei~f~~~T~I~~~  547 (786)
                      +. ....+||....-..+.++
T Consensus        72 ~~~~~~~~El~~~~i~il~~~   92 (102)
T cd04320          72 KSCTQQDVELHIEKIYVVSEA   92 (102)
T ss_pred             cCCCcCcEEEEEEEEEEEecC
Confidence            11 236799988765555443

This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.

>PF02760 HIN: HIN-200/IF120x domain; InterPro: IPR004021 This domain has no known function

Probab=84.67  E-value=39  Score=32.56  Aligned_cols=156  Identities=14%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             EEEEEEeecCCcceecCCC-CCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCce
Q psy15132        456 TIKARVTNKTPIREWNNAR-GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY  534 (786)
Q Consensus       456 ~I~~RV~~k~~~r~~~~~~-~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~y  534 (786)
                      ...|-|+.-.+.=.|..+. |..++|+-+++-++.-.++.+|+-.   +.+.+..++++.||++.-           +.-
T Consensus         4 P~~VmVLkaTepF~Ye~~e~gkk~MFHATVATet~fF~VKVfn~~---LKeKF~~kkiI~IS~Y~~-----------~~g   69 (170)
T PF02760_consen    4 PKTVMVLKATEPFEYESPEEGKKKMFHATVATETEFFRVKVFNIN---LKEKFIPKKIIAISDYFG-----------RNG   69 (170)
T ss_dssp             EEEEEEEEE---EEEECTTTCEEEEEEEEEE-SS-EEEEEES-GG---GCCTCSTTSEEEEESEEE-----------ETT
T ss_pred             ceEEEEEeccCCeEEeCcccCcceEEEEEEeccccEEEEEEecch---hHhhcCCCcEEEEehhhc-----------ccc
Confidence            3567777777777787765 5668999999999999999999974   567889999999999753           233


Q ss_pred             EEEEccccEEEEccCCCCCCCCcce----eeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEee
Q psy15132        535 EMSFTHSTTVIPCNEDEVGNMPSVK----YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD  610 (786)
Q Consensus       535 ei~f~~~T~I~~~~d~~~~~iP~~~----~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D  610 (786)
                      -|.+++.|.|.++..+..-.+|.--    -.--+|++|.....+.+|+=+=.|...      +.+     ....-..|.|
T Consensus        70 fLEi~~aSsVse~~~dq~~eVp~~ii~~A~~TpKI~~L~~q~~Gt~V~G~F~v~KK------~v~-----~~~~~YeI~D  138 (170)
T PF02760_consen   70 FLEINEASSVSEVNPDQKMEVPNSIIRRANETPKINDLQKQASGTFVNGLFTVHKK------TVN-----KKNTIYEIQD  138 (170)
T ss_dssp             EEEE-TTSEEEE--TTC-----HHHHHHHCS---HHHHTTSSTTEEEEEEEEEEEE------EEE-----SSEEEEEEEE
T ss_pred             eEEEeeccEEEecCCCceEEccHHHHHhhccCCchhHHhcCCCCcEEeEEEEEEEE------EEc-----CCeEEEEEec
Confidence            5777888999988644322566532    122468888888788887644333321      111     1234578999


Q ss_pred             ccccEEEEEEeccccccccCCCCCEEEE
Q psy15132        611 QSQASVTMTLWGKEAETFDASNKPVIAV  638 (786)
Q Consensus       611 ~s~~~i~~tLWg~~a~~~~~~~~~vv~i  638 (786)
                      ++| .+++...|.... ....+|+-+.+
T Consensus       139 nTG-~MeVvv~G~~~n-i~CEeGDKLrL  164 (170)
T PF02760_consen  139 NTG-KMEVVVYGKWHN-IKCEEGDKLRL  164 (170)
T ss_dssp             TTE-EEEEEEEGGGCG-CC--TT-EEEE
T ss_pred             CCC-cEEEEEeccCcc-cccCCCCeEEE
Confidence            999 899999998663 35566665533

It is found in one or two copies per protein, and is found associated with the PAAD/DAPIN domain IPR004020 from INTERPRO.; PDB: 3RN2_A 3RN5_C 2OQ0_A 3B6Y_A 3RLN_A 3RNU_A 3RLO_A.

>PRK06752 single-stranded DNA-binding protein; Validated

Probab=83.91  E-value=7  Score=35.61  Aligned_cols=63  Identities=13%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc------CCC----c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD------ESG----E-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D------~~G----~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      ++...|.||+.+-..+|...+  | ..+.+|.|+-      ..|    + +.+++|+..++.+...|+.|+-+.+.+
T Consensus         2 mN~v~liGrl~~dPelr~t~~--G-~~~~~f~lAv~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G   75 (112)
T PRK06752          2 MNRVVLIGRLTKEPELYYTKQ--G-VAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITG   75 (112)
T ss_pred             ceEEEEEEECcCCCEEEECCC--C-CEEEEEEEEECCCeEcCCCCEEEEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence            356789999998878776432  2 3667777663      334    3 999999999999999999999999887

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=83.61  E-value=0.85  Score=38.95  Aligned_cols=29  Identities=31%  Similarity=0.836  Sum_probs=23.3

Q ss_pred             CCCCCCCCcc-eeeCCCceeecccCCCcCCce
Q psy15132        223 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFNTF  253 (786)
Q Consensus       223 aC~~~~C~kK-v~~~~~~~~~C~~C~~~~~~~  253 (786)
                      .||  .|+++ |.....|.|.|.+|+..+.-.
T Consensus        37 ~Cp--~C~~~~VkR~a~GIW~C~kCg~~fAGg   66 (89)
T COG1997          37 VCP--FCGRTTVKRIATGIWKCRKCGAKFAGG   66 (89)
T ss_pred             cCC--CCCCcceeeeccCeEEcCCCCCeeccc
Confidence            799  99987 445678999999999876543

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG

Probab=83.56  E-value=9.9  Score=30.93  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             EEEEEEEeCCCCEEEEEeccc-ccccccCCCCcEEEEEeEEEeeeCCceee
Q psy15132         86 KRDITLVDQSQASVTMTLWGK-EAETFDASNKPVIAVKAARVSEFQGGKTL  135 (786)
Q Consensus        86 kr~i~l~D~s~~~i~~tLWg~-~a~~~~~~~~~Vi~i~~~kv~~f~g~~~l  135 (786)
                      ...+.+.|.+| .+.++.|+. .-..-....+..+.+.| |++.|+|..++
T Consensus        19 ~~~~~~~D~~g-~i~~~~F~~~~~~~~~~~~G~~~~v~G-kv~~~~~~~qi   67 (75)
T cd04488          19 RLKVTLSDGTG-TLTLVFFNFQPYLKKQLPPGTRVRVSG-KVKRFRGGLQI   67 (75)
T ss_pred             EEEEEEEcCCC-EEEEEEECCCHHHHhcCCCCCEEEEEE-EEeecCCeeEE
Confidence            56889999987 899999983 21111124555665554 78888654433

RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha

>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs)

Probab=83.50  E-value=9.3  Score=32.70  Aligned_cols=75  Identities=20%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHH---HhhhhccCCcEEEEcceEEeccCCcccccC
Q psy15132        455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN---RFHDMIEKDKVYYISNCTLKPANKKFSSIN  531 (786)
Q Consensus       455 w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~---kf~~~l~~G~vy~is~~~V~~a~~~y~~~~  531 (786)
                      .+|+|||-++   |      ..|++.=++|.|.+|.+++.+-....+   ++...|..|+++.+.+.-.....+.  ...
T Consensus         2 V~i~Gwv~~~---R------~~g~~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~--~~~   70 (85)
T cd04100           2 VTLAGWVHSR---R------DHGGLIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGN--LAT   70 (85)
T ss_pred             EEEEEEEehh---c------cCCCEEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCC--CCC
Confidence            3678888732   3      235666678999999999987654322   3345699999999988644322111  234


Q ss_pred             CceEEEEcc
Q psy15132        532 NDYEMSFTH  540 (786)
Q Consensus       532 ~~yei~f~~  540 (786)
                      ..+||....
T Consensus        71 ~~~El~~~~   79 (85)
T cd04100          71 GEIELQAEE   79 (85)
T ss_pred             CCEEEEEeE
Confidence            678887643

This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A

>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]

Probab=83.46  E-value=4.5  Score=40.26  Aligned_cols=54  Identities=17%  Similarity=0.347  Sum_probs=37.1

Q ss_pred             EEEEEeCCCCEEEEEecccccccccC----CCCcEEEEEeEEEeeeCCceeeeecceeEE
Q psy15132         88 DITLVDQSQASVTMTLWGKEAETFDA----SNKPVIAVKAARVSEFQGGKTLSLSMSSVL  143 (786)
Q Consensus        88 ~i~l~D~s~~~i~~tLWg~~a~~~~~----~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i  143 (786)
                      -++|.|-+| .|+|+.|-..+....+    ..+..+-+- .-+++|.|+++++...-+.|
T Consensus        86 ~~~iEDGTG-~Ievr~W~~~~~~~e~~~d~~~~~yvkV~-G~lk~F~GK~~I~~~~i~~I  143 (258)
T COG5235          86 MFVIEDGTG-SIEVRFWPGNSYEEEQCKDLEEQNYVKVN-GSLKTFNGKRSISASHISAI  143 (258)
T ss_pred             EEEEecCCc-eEEEEecCCCchHHHhccccccccEEEEe-cceeeeCCeeEEehhheeec
Confidence            578999998 9999999987765432    233333333 34689999998886654443

>PRK09010 single-stranded DNA-binding protein; Provisional

Probab=83.35  E-value=9.8  Score=37.74  Aligned_cols=63  Identities=25%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC------c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG------E-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      .+...|.+|+..--.+|...+  | ..+.+|.|+      |. +|      + +++++|+.+++.+...|+.|+-++|++
T Consensus         6 ~N~V~LiGrLg~DPelR~t~n--G-~~v~~fsVAvn~~~kd~~~Ge~~e~t~w~~V~~fgk~Ae~~~~~L~KGs~V~VeG   82 (177)
T PRK09010          6 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEG   82 (177)
T ss_pred             ceEEEEEEEeCCCceEEEcCC--C-CEEEEEEEEEcCccccCcccccccceEEEEEEEehhHHHHHHHhcCCCCEEEEEE
Confidence            578899999999888888754  2 366666654      32 23      2 799999999999999999999999987

>PLN02850 aspartate-tRNA ligase

Probab=83.16  E-value=8.4  Score=45.05  Aligned_cols=98  Identities=14%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             CceeeecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcch------hHHHhhhhccCCc
Q psy15132        440 VQTHPIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND------ECNRFHDMIEKDK  511 (786)
Q Consensus       440 ~~~~~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~------~~~kf~~~l~~G~  511 (786)
                      ...+.|++|++.  ....+|+|||.++   |      ..|++.=++|.|..|.|++++-..      ..-+|...|..|+
T Consensus        67 ~~~~~i~~l~~~~~g~~V~v~Grv~~~---R------~~gk~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es  137 (530)
T PLN02850         67 REWTDVSDLGEELAGSEVLIRGRVHTI---R------GKGKSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRES  137 (530)
T ss_pred             ceEeEhhhcchhhCCCEEEEEEEEEEE---c------cCCCeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCC
Confidence            457899999874  3467899999842   3      346776678999999999998543      3345667899999


Q ss_pred             EEEEcceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132        512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       512 vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~  547 (786)
                      ++.+.+--+++..+ -......+||....-..+..+
T Consensus       138 ~V~V~G~v~~~~~~-~~~~t~~~El~~~~i~vls~a  172 (530)
T PLN02850        138 VVDVEGVVSVPKKP-VKGTTQQVEIQVRKIYCVSKA  172 (530)
T ss_pred             EEEEEEEEEccCcC-CCCCCccEEEEEeEEEEEeCC
Confidence            99998855543322 222234899998876666555

>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS)

Probab=82.51  E-value=10  Score=34.14  Aligned_cols=77  Identities=25%  Similarity=0.383  Sum_probs=51.2

Q ss_pred             eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcch-----hHHHhhhhccCCcEEEEcceEEeccCCcccc
Q psy15132        455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND-----ECNRFHDMIEKDKVYYISNCTLKPANKKFSS  529 (786)
Q Consensus       455 w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~-----~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~  529 (786)
                      .+|+|||.+.   |.      .|++.=++|.|.+|.+++++-..     ...++...|..|+++.+.+.-+...      
T Consensus         2 v~v~GwV~~~---R~------~g~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~------   66 (108)
T cd04322           2 VSVAGRIMSK---RG------SGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTK------   66 (108)
T ss_pred             EEEEEEEEEE---ec------CCCeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecC------
Confidence            3678888842   32      35677778999999999988533     2234445599999999987544332      


Q ss_pred             cCCceEEEEccccEEEEc
Q psy15132        530 INNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       530 ~~~~yei~f~~~T~I~~~  547 (786)
                       ...+||....-..+.++
T Consensus        67 -~g~~El~~~~~~ils~~   83 (108)
T cd04322          67 -TGELSIFVKEFTLLSKS   83 (108)
T ss_pred             -CCCEEEEeCEeEEeecc
Confidence             15688877655444444

These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein

>cd04495 BRCA2DBD_OB3 BRCA2DBD_OB3: A subfamily of OB folds corresponding to the third OB fold (OB3) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD

Probab=82.46  E-value=5.6  Score=35.06  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             EEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccC---CCCcEEEEEeEEEeeeC--Cceee
Q psy15132         61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA---SNKPVIAVKAARVSEFQ--GGKTL  135 (786)
Q Consensus        61 DViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~---~~~~Vi~i~~~kv~~f~--g~~~l  135 (786)
                      |++|+|++|+...      +|   .---+.|.|++-.-+.+-+|....+...+   +.+..||+.+...+...  |-.+|
T Consensus         1 D~VGvVvsV~~~~------~g---~~~~vYLaDe~~nll~vkfw~~l~~~~~EDvvk~~~lia~SNLQwR~~s~~~iPtl   71 (100)
T cd04495           1 DTVGVVISVGKPI------EG---KFPAVYLADECLNLLCVKFWSSLEQYAYEDVVKRRVLLAASNLQWRTESTSGVPTL   71 (100)
T ss_pred             CceEEEEEEcccc------cC---ccceEEEecCCcCEEEEEEecchHHhhhhhhcccceEEEEecceEeccccCCCcee
Confidence            7899999998654      12   23368899999999999999977655432   45667888776554332  44556


Q ss_pred             eecceeEEEECCC
Q psy15132        136 SLSMSSVLSLNPD  148 (786)
Q Consensus       136 s~~~~s~i~~npd  148 (786)
                      -.+.-|.+..||-
T Consensus        72 ~Age~t~FS~nPK   84 (100)
T cd04495          72 FAGEYSTFSANPK   84 (100)
T ss_pred             eeecceeecCCcc
Confidence            6666777777773

BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).

>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]

Probab=82.39  E-value=3.7  Score=40.88  Aligned_cols=61  Identities=16%  Similarity=0.353  Sum_probs=39.0

Q ss_pred             eeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccccc----CCCCCEEEEEeEEEeecCCc
Q psy15132        576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD----ASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~----~~~~~vv~i~~~~V~~f~G~  649 (786)
                      .|-++|+|..+.      ...+|     .-++|.|.+| +|+|+.|...+-..+    ...+..|-+ ...+++|+|+
T Consensus        68 ~V~fVGvvrni~------~~ttn-----~~~~iEDGTG-~Ievr~W~~~~~~~e~~~d~~~~~yvkV-~G~lk~F~GK  132 (258)
T COG5235          68 NVQFVGVVRNIK------TSTTN-----SMFVIEDGTG-SIEVRFWPGNSYEEEQCKDLEEQNYVKV-NGSLKTFNGK  132 (258)
T ss_pred             eEEEEEEEEeee------ecccc-----eEEEEecCCc-eEEEEecCCCchHHHhccccccccEEEE-ecceeeeCCe
Confidence            355666665543      22223     3688999999 999999998664433    233444433 4467899998

>PRK06863 single-stranded DNA-binding protein; Provisional

Probab=81.97  E-value=8.5  Score=37.84  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=49.4

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC------c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG------E-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      .+...|.||+...-.+|...+  | ..+.++.|+      |. .|      + +++++|+..++.+...|+.|+-+.+.+
T Consensus         4 ~N~V~LiGrLg~DPElR~t~n--G-~~va~fsVAvn~~~~d~~~Ge~~e~t~w~~Vv~fgk~AE~v~~~LkKGs~V~VeG   80 (168)
T PRK06863          4 INKVIIVGHLGNDPEIRTMPN--G-EAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEG   80 (168)
T ss_pred             ccEEEEEEEcCCCCEEEEcCC--C-CEEEEEEEEecCcccccCCCcccccceEEEEEEEhHHHHHHHHHCCCCCEEEEEE
Confidence            577899999999888888754  2 256666654      21 12      3 899999999999999999999999987

>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

Probab=81.83  E-value=5.9  Score=34.08  Aligned_cols=49  Identities=16%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             eeeEEEEEEeeccccEEEEEEecccccccc--CCCCCEEEEEeEEEeecCC
Q psy15132        600 TYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKAARVSEFQG  648 (786)
Q Consensus       600 ~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~V~~f~G  648 (786)
                      .....++.|.|+.|..|..+.+.+.++.|.  ..+|.+..|.+.+|..-.+
T Consensus        17 ~~~~~~miL~De~G~~I~a~i~~~~~~~f~~~L~eg~vy~is~f~v~~~~~   67 (86)
T cd04480          17 SGESLEMVLVDEKGNRIHATIPKRLAAKFRPLLKEGKWYTISNFEVAPNTG   67 (86)
T ss_pred             CCcEEEEEEEcCCCCEEEEEECHHHHHhhhhhceeCCEEEEeeEEEEcCCC
Confidence            455678999999999999999999998887  5788899999888876443

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.

>PRK07459 single-stranded DNA-binding protein; Provisional

Probab=81.72  E-value=5.2  Score=37.07  Aligned_cols=63  Identities=14%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC------CCc-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE------SGE-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~------~G~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      .+...|.||+.+--.+|...+  | ..+.++.|+=.      +.+ +.+++|+.+++.+...|+.|+-+.+.+
T Consensus         3 ~N~v~LiGrL~~DPelr~t~~--G-~~v~~fslAv~~~~~~~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~V~G   72 (121)
T PRK07459          3 LNSVTLVGRAGRDPEVRYFES--G-SVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQVAADYVKKGSLIGITG   72 (121)
T ss_pred             ccEEEEEEEccCCCEEEEcCC--C-CEEEEEEEEecccccCCCceEEEEEEehHHHHHHHHHcCCCCEEEEEE
Confidence            356789999998877886543  2 26777777632      223 999999999999999999999999987

>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs

Probab=81.56  E-value=10  Score=32.40  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=48.4

Q ss_pred             eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHH--HhhhhccCCcEEEEcceEEeccCCcccccCC
Q psy15132        455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN--RFHDMIEKDKVYYISNCTLKPANKKFSSINN  532 (786)
Q Consensus       455 w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~--kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~  532 (786)
                      -+|+|||-++   |.      .|++.=++|.|.+|.+++++-.+...  ++...|..|+++.+.+- +....+.. ...+
T Consensus         2 V~v~Gwv~~~---R~------~g~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~-v~~~~~~~-~~~~   70 (84)
T cd04323           2 VKVFGWVHRL---RS------QKKLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGE-VKEDPRAK-QAPG   70 (84)
T ss_pred             EEEEEEEEEE---ec------CCCcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEE-EEECCccc-CCCC
Confidence            3677888742   22      25666778999999999988654322  22345899999999774 43332221 3356


Q ss_pred             ceEEEEcc
Q psy15132        533 DYEMSFTH  540 (786)
Q Consensus       533 ~yei~f~~  540 (786)
                      ++||...+
T Consensus        71 ~~Ei~~~~   78 (84)
T cd04323          71 GYELQVDY   78 (84)
T ss_pred             CEEEEEEE
Confidence            78887754

This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with

>PRK13732 single-stranded DNA-binding protein; Provisional

Probab=81.46  E-value=13  Score=36.76  Aligned_cols=64  Identities=22%  Similarity=0.345  Sum_probs=50.5

Q ss_pred             CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC-------CC------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-------SG------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~-------~G------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      +.+...|.+|+..--++|...+  | ..+.+|.|+-.       +|      + +++++|+.+++.+...|+.|+.+++.
T Consensus         5 ~mN~V~LiGrLg~DPElR~t~n--G-~~va~fslAvn~~~kd~~~Ge~~e~t~w~~Vv~wgk~Ae~v~~~L~KG~~V~Ve   81 (175)
T PRK13732          5 GINKVILVGRLGKDPEVRYIPN--G-GAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIE   81 (175)
T ss_pred             CceEEEEEEEecCCCEEEEcCC--C-CEEEEEEEEEcCccccCCCCceecceeEEEEEEecHHHHHHHHhcCCCCEEEEE
Confidence            3578899999998878887644  2 36777766522       24      2 79999999999999999999999998


Q ss_pred             c
Q psy15132        517 N  517 (786)
Q Consensus       517 ~  517 (786)
                      +
T Consensus        82 G   82 (175)
T PRK13732         82 G   82 (175)
T ss_pred             E
Confidence            7

>PRK07772 single-stranded DNA-binding protein; Provisional

Probab=81.37  E-value=8.3  Score=38.55  Aligned_cols=63  Identities=10%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc-------CCC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-------ESG-------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-------~~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      .+..+|.+|++.--.+|...+  + ..+.+|.|+-       ++|       . |++++|+.+++.+...|+.|+-+.+.
T Consensus         4 ~~~VtLiGrL~~DPElR~t~s--G-~~va~FrVAv~~r~~~~~~g~~~d~~t~fi~V~~Wg~~Ae~va~~L~KGd~V~V~   80 (186)
T PRK07772          4 DTTITVVGNLTADPELRFTPS--G-AAVANFTVASTPRTFDRQTNEWKDGEALFLRCSIWRQAAENVAESLTKGMRVIVT   80 (186)
T ss_pred             cCEEEEEEEeCCCCeEEEcCC--C-CEEEEEEEEecCcceecCCCcEeccCceEEEEEEecHHHHHHHHhcCCCCEEEEE
Confidence            456789999999888887643  2 2566666651       112       2 89999999999999999999999888


Q ss_pred             c
Q psy15132        517 N  517 (786)
Q Consensus       517 ~  517 (786)
                      .
T Consensus        81 G   81 (186)
T PRK07772         81 G   81 (186)
T ss_pred             E
Confidence            6

>PF09104 BRCA-2_OB3: BRCA2, oligonucleotide/oligosaccharide-binding, domain 3; InterPro: IPR015188 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel

Probab=81.26  E-value=11  Score=35.73  Aligned_cols=104  Identities=20%  Similarity=0.299  Sum_probs=56.7

Q ss_pred             Cccchhc---cCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccc-c--CCCCcEEE
Q psy15132         47 PLKTIAE---ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-D--ASNKPVIA  120 (786)
Q Consensus        47 ~~~~i~~---~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~-~--~~~~~Vi~  120 (786)
                      .|.+|.+   ..+=.-+|++|+|..|      ..+ .|   ..--+.|.|.+..-+.+.+|++...-- +  ...+.+||
T Consensus         5 ~f~~l~~p~f~pp~~EvD~VG~VvsV------~~~-~~---f~~~vYLsD~~~Nll~Ikfw~~l~~~~~eDilk~~~liA   74 (143)
T PF09104_consen    5 HFSDLQDPDFQPPYGEVDTVGFVVSV------SKK-QG---FQPLVYLSDECHNLLAIKFWTGLNQYGYEDILKPGSLIA   74 (143)
T ss_dssp             -CGGGGSTT--TCCCEEEEEEEEEEE------E---TT---S--EEEEE-TTS-EEEEEESS-------SS---TT-EEE
T ss_pred             chhhhcCcccCCCccccceEEEEEEE------Eec-CC---CceeEEeecCCccEEEEEeccCccccchhhhcCcceEEE
Confidence            4556653   1334679999999999      111 12   122388999999899999999987321 1  26788999


Q ss_pred             EEeEEE-eee-CCceeeeecceeEEEECCC---chH-HHHHHhhhh
Q psy15132        121 VKAARV-SEF-QGGKTLSLSMSSVLSLNPD---IPE-CHKLQGWFS  160 (786)
Q Consensus       121 i~~~kv-~~f-~g~~~ls~~~~s~i~~npd---~pe-~~~l~~w~~  160 (786)
                      ..+..- .+. .+-..+-.+.-|.+.-||-   +.| ...||+-++
T Consensus        75 ~SNLqwR~~s~s~iP~~~A~d~S~FS~nPK~~hLqe~~~~Lk~~i~  120 (143)
T PF09104_consen   75 ASNLQWRPESTSGIPTLFATDLSVFSANPKESHLQEAFNKLKNTIE  120 (143)
T ss_dssp             EEEEEE-S-TTSSS-EEEEECCEEEESS-SSCCCHHHHHHHCHHHH
T ss_pred             EeeeEeecccccCCCeeEeccceeeecCccHHHHHHHHHHHHHHhh
Confidence            887644 222 2444667777888888883   333 334554444

OB3 has a pronounced groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for strong ssDNA binding []. ; PDB: 1IYJ_D 1MIU_A.

>PRK06293 single-stranded DNA-binding protein; Provisional

Probab=81.01  E-value=9.7  Score=37.11  Aligned_cols=63  Identities=13%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC-------Cc-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-------GE-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~-------G~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      ++...|.+|+.+--.+|...+  | ..+.+|.|+=..       -+ +++++|+..++.....|+.|+-+.+.+
T Consensus         1 MN~V~LiGrLg~DPElR~t~s--G-~~v~~FsLAvn~~~~~~~~T~wi~v~awg~~Ae~v~~yL~KG~~V~VeG   71 (161)
T PRK06293          1 MMFGYIVGRLGADPEERMTSK--G-KRVVVLRLGVKSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAG   71 (161)
T ss_pred             CeEEEEEEEecCCCeEEEcCC--C-CEEEEEEEEEeCCCCCccceEEEEEEEEhHHHHHHHHhCCCCCEEEEEE
Confidence            356789999998877776533  2 367777776321       13 999999999999999999999999987

>PRK08763 single-stranded DNA-binding protein; Provisional

Probab=80.86  E-value=9.5  Score=37.34  Aligned_cols=64  Identities=23%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             CCCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC------c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG------E-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      +.+...|.+|+.+--.+|...+  | ..+.+|.|+      |+.|      + +++++|+.+++.....|+.|+-++|.+
T Consensus         4 ~~Nkv~LiGrLg~DPelr~t~~--G-~~va~fsVA~~~~~k~~~G~~~e~t~w~~Vv~fgk~Ae~v~~~L~KGs~V~VeG   80 (164)
T PRK08763          4 GINKVILVGNLGNDPDIKYTQS--G-MTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG   80 (164)
T ss_pred             cceEEEEEEEecCCCeEEEcCC--C-CeEEEEEEEeccceecCCCCeeccceEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence            3678899999998777776533  2 366666665      3334      2 999999999999999999999999987

>PRK08486 single-stranded DNA-binding protein; Provisional

Probab=80.67  E-value=9.1  Score=38.15  Aligned_cols=62  Identities=19%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             CceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC------c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG------E-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      +...|.+|+++--.+|...+  | ..+.++.|+      ++.|      + |.+++|+.+++.+...|+.|+-+.|.+
T Consensus         3 N~V~LvGrL~~DPElr~t~s--G-~~va~fslAv~r~~~~~~Ge~~e~t~fi~v~~fg~~AE~~~~~l~KG~~V~VeG   77 (182)
T PRK08486          3 NKVILVGNLTRDVELRYLPS--G-SAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEG   77 (182)
T ss_pred             eEEEEEEEecCCCEEEECCC--C-CEEEEEEEEEecceecCCCCCcccceEEEEEEEhHHHHHHHHHcCCCCEEEEEE
Confidence            56789999998888887643  2 255566553      3333      2 999999999999999999999999987

>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids

Probab=80.29  E-value=4.6  Score=35.79  Aligned_cols=63  Identities=19%  Similarity=0.339  Sum_probs=43.1

Q ss_pred             CceEEEEEEeecCCcceecCCCCCceEEEEEEE--c----CCC------c-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--D----ESG------E-IRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~--D----~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      ++..|.|||...-.+|...+  | ..+.++.|+  +    +.+      . +++++|+++++.+.+.++.|+.+.|.+-
T Consensus         2 N~v~l~G~l~~~p~~~~~~~--g-~~~~~f~la~~~~~~~~~~~~~~~~~~~~v~~~g~~A~~~~~~l~kG~~V~V~G~   77 (104)
T PF00436_consen    2 NKVTLIGRLGKDPELRYTKN--G-TPVARFSLAVNRRFKDDGGEGDEKTDWINVVAWGKLAENVAEYLKKGDRVYVEGR   77 (104)
T ss_dssp             EEEEEEEEESSSEEEEEETT--S-EEEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEE
T ss_pred             cEEEEEEEECCCcEEEECCC--C-CEEEEEEEEEecEEeeeeccCccceEEEEEEeeeecccccceEEcCCCEEEEEEE
Confidence            45689999998777776642  2 245455432  2    111      3 9999999999999999999999999883

It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	786
1jmc_A	246	Single Stranded Dna-Binding Domain Of Human Replica		7e-59
1fgu_A	252	Ssdna-Binding Domain Of The Large Subunit Of Replic		8e-59
4gop_C	444	Structure And Conformational Change Of A Replicatio		7e-53
4gop_C	444	Structure And Conformational Change Of A Replicatio		2e-20
1l1o_C	181	Structure Of The Human Replication Protein A (Rpa)		8e-33
1l1o_C	181	Structure Of The Human Replication Protein A (Rpa)		2e-32
1ynx_A	114	Solution Structure Of Dna Binding Domain A (Dbd-A)		9e-26
2b29_A	123	N-Terminal Domain Of The Rpa70 Subunit Of Human Rep		5e-09
1ewi_A	114	Human Replication Protein A: Global Fold Of The N-T		2e-07

>pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication Protein A Bound To Single Stranded Dna, Rpa70 Subunit, Residues 183-420 Length = 246

Iteration: 1
 Score =  225 bits (574), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 103/208 (49%), Positives = 152/208 (73%), Gaps = 2/208 (0%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
           PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 10  PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKF 69
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
             +IE +KVYY S  TLK ANK+F+++ NDYEM+F + T+V+PC +D   ++P+V++ F 
Sbjct: 70  FPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFT 127
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
            +  +   S D  +D++G+C    + + +T ++N +   KR+I L+D S   VT TLWG+
Sbjct: 128 GIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGE 187
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
           +A+ FD S +PV+A+K ARVS+F G  L
Sbjct: 188 DADKFDGSRQPVLAIKGARVSDFGGRSL 215

>pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subunit Of Replication Protein A Length = 252

Iteration: 1
 Score =  225 bits (573), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/208 (49%), Positives = 152/208 (73%), Gaps = 2/208 (0%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
           PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 6   PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKF 65
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
             +IE +KVYY S  TLK ANK+F+++ NDYEM+F + T+V+PC +D   ++P+V++ F 
Sbjct: 66  FPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFT 123
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
            +  +   S D  +D++G+C    + + +T ++N +   KR+I L+D S   VT TLWG+
Sbjct: 124 GIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGE 183
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
           +A+ FD S +PV+A+K ARVS+F G  L
Sbjct: 184 DADKFDGSRQPVLAIKGARVSDFGGRSL 211

>pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication Protein A Heterotrimer Bound To Ssdna Length = 444

Iteration: 1
 Score =  205 bits (522), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 143/215 (66%), Gaps = 6/215 (2%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
           +PI  LSPYQN+WTIKARVT+K+ IR W+N RG GKLFS++LLD+SGEI+AT FND  +R
Sbjct: 4   YPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDR 63
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
           F+ +++++ VY IS   +  A K+FS++ N+YE++F +ST +  C   +  ++P VKY F
Sbjct: 64  FYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECT--DATDVPEVKYEF 121
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
           V +  +  +  ++  DV+G+     ELS +  K +Q+   KR++TLVDQ   SV +TLWG
Sbjct: 122 VRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWG 181
Query: 623 KEAETF----DASNKPVIAVKAARVSEFQGNLLLM 653
           K AETF        KPV+A K  +V +F G  L M
Sbjct: 182 KTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSM 216

>pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication Protein A Heterotrimer Bound To Ssdna Length = 444

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNK 713
           +++D+ LGM +K DY +VR  +   +  N  Y AC S+ CNKKV +D  N  +RCEKC++
Sbjct: 277 QVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENN-WRCEKCDR 335
Query: 714 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKA 768
            + T  YR IL   + D T  +W++ F  +A  ++G++A E+ +  E+       AL +A
Sbjct: 336 SYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRA 395
Query: 769 LFTQYIFRLRAKLEHYN 785
               Y+F  RAK++ +N
Sbjct: 396 ANRMYMFNCRAKMDTFN 412

>pdb|1L1O|C Chain C, Structure Of The Human Replication Protein A (Rpa) Trimerization Core Length = 181

Iteration: 1
 Score =  139 bits (349), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Query: 190 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 249
           E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCEKC+ E
Sbjct: 12  EVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTE 71
Query: 250 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKAL 304
           F  F YR+IL V I D+  + WVT FQ  AE+ILG  A  +GE  + +        + A 
Sbjct: 72  FPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNAN 131
Query: 305 FTQYIFRLRAKLEHYNGTKKIPDGV 329
           F  +IFR+R K+E YN   +I   V
Sbjct: 132 FRSFIFRVRVKVETYNDESRIKATV 156

>pdb|1L1O|C Chain C, Structure Of The Human Replication Protein A (Rpa) Trimerization Core Length = 181

Iteration: 1
 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 649 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
           N   + E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRC
Sbjct: 6   NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRC 65
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----P 763
           EKC+ EF  F YR+IL V I D+  + WVT FQ  AE+ILG  A  +GE  + +      
Sbjct: 66  EKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEE 125
Query: 764 ALKKALFTQYIFRLRAKLEHYN 785
             + A F  +IFR+R K+E YN
Sbjct: 126 VFQNANFRSFIFRVRVKVETYN 147

>pdb|1YNX|A Chain A, Solution Structure Of Dna Binding Domain A (Dbd-A) Of S.Cerevisiae Replication Protein A (Rpa) Length = 114

Iteration: 1
 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Query: 442 THPIVS---LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
           T PI +   LSPYQN WTIKARV+ K  I+ W+N RG GKLF+++ LD SGEIRAT FND
Sbjct: 1   TRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFND 60
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
              +F++++++ KVYY+S   L+PA  +F+++ + YE++    T +  C
Sbjct: 61  FATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEEC 109

>pdb|2B29|A Chain A, N-Terminal Domain Of The Rpa70 Subunit Of Human Replication Protein A. Length = 123

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
           DG+N  S  MLATQLN ++ +  LS   + QI R+IV+ +  G    R V+I++EL ++K
Sbjct: 51  DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 106
Query: 387 PGTEIGFKIGNPQP 400
               +G KIGNP P
Sbjct: 107 SAEAVGVKIGNPVP 120

>pdb|1EWI|A Chain A, Human Replication Protein A: Global Fold Of The N-Terminal Rpa-70 Domain Reveals A Basic Cleft And Flexible C- Terminal Linker Length = 114

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
           DG+N  S  MLATQLN ++ +  LS   + QI R+IV+ +  G    R V+I++EL ++K
Sbjct: 48  DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 103
Query: 387 PGTEIGFKIGN 397
               +G KIGN
Sbjct: 104 SAEAVGVKIGN 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	786
1jmc_A	246	Protein (replication protein A (RPA)); human ssDNA	2e-58
1jmc_A	246	Protein (replication protein A (RPA)); human ssDNA	5e-34
1ynx_A	114	Replication factor-A protein 1; canonical OB fold,	8e-45
1ynx_A	114	Replication factor-A protein 1; canonical OB fold,	3e-05
1l1o_C	181	Replication protein A 70 kDa DNA-binding subunit;	9e-42
1l1o_C	181	Replication protein A 70 kDa DNA-binding subunit;	8e-40
3u50_C	172	Telomerase-associated protein 82; TEB1, processivi	1e-35
3u50_C	172	Telomerase-associated protein 82; TEB1, processivi	2e-34
1o7i_A	119	SSB, SSO2364, single stranded DNA binding protein;	2e-22
2b29_A	123	Replication protein A 70 kDa DNA-binding subunit;	3e-19
2k50_A	115	Replication factor A related protein; uncharacteri	2e-17
3dm3_A	105	Replication factor A; probably plays AN essential	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
3e0e_A	97	Replication protein A; structural genomics, PSI-2,	6e-06
2k75_A	106	Uncharacterized protein TA0387; closed beta barrel	9e-05

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Length = 246

 Score =  198 bits (503), Expect = 2e-58
 Identities = 103/209 (49%), Positives = 152/209 (72%), Gaps = 2/209 (0%)

Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
            PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++
Sbjct: 9   VPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDK 68

Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
           F  +IE +KVYY S  TLK ANK+F+++ NDYEM+F + T+V+PC +D   ++P+V++ F
Sbjct: 69  FFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDF 126

Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
             +  +   S D  +D++G+C    + + +T ++N +   KR+I L+D S   VT TLWG
Sbjct: 127 TGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWG 186

Query: 623 KEAETFDASNKPVIAVKAARVSEFQGNLL 651
           ++A+ FD S +PV+A+K ARVS+F G  L
Sbjct: 187 EDADKFDGSRQPVLAIKGARVSDFGGRSL 215

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Length = 246

 Score =  129 bits (326), Expect = 5e-34
 Identities = 67/158 (42%), Positives = 109/158 (68%), Gaps = 3/158 (1%)

Query: 5   PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
            ANK+F+++ NDYEM+F + T+V+PC +D   ++P+V++ F  +  +   S D  +D++G
Sbjct: 88  IANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIG 145

Query: 65  VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
           +C    + + +T ++N +   KR+I L+D S   VT TLWG++A+ FD S +PV+A+K A
Sbjct: 146 ICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGA 205

Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
           RVS+F GG++LS+  SS +  NPDIPE +KL+GWF  +
Sbjct: 206 RVSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAE 242

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  155 bits (393), Expect = 8e-45
 Identities = 50/108 (46%), Positives = 75/108 (69%)

Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
             I  LSPYQN WTIKARV+ K  I+ W+N RG GKLF+++ LD SGEIRAT FND   +
Sbjct: 5   FAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATK 64

Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
           F++++++ KVYY+S   L+PA  +F+++ + YE++    T +  C ++
Sbjct: 65  FNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 5   PANKKFSSINNDYEMSFTHSTTVIPCNED 33
           PA  +F+++ + YE++    T +  C ++
Sbjct: 84  PAKPQFTNLTHPYELNLDRDTVIEECFDE 112

>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Length = 181

 Score =  149 bits (377), Expect = 9e-42
 Identities = 70/152 (46%), Positives = 92/152 (60%), Gaps = 5/152 (3%)

Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
           GG+  N   + E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ N
Sbjct: 1   GGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQN 60

Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
           G+YRCEKC+ EF  F YR+IL V I D+  + WVT FQ  AE+ILG  A  +GE  + + 
Sbjct: 61  GLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNE 120

Query: 299 -----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
                  + A F  +IFR+R K+E YN   +I
Sbjct: 121 QAFEEVFQNANFRSFIFRVRVKVETYNDESRI 152

>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Length = 181

 Score =  144 bits (363), Expect = 8e-40
 Identities = 66/136 (48%), Positives = 85/136 (62%), Gaps = 5/136 (3%)

Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
           E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YRCEKC+ E
Sbjct: 12  EVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTE 71

Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKAL 769
           F  F YR+IL V I D+  + WVT FQ  AE+ILG  A  +GE  + +        + A 
Sbjct: 72  FPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNAN 131

Query: 770 FTQYIFRLRAKLEHYN 785
           F  +IFR+R K+E YN
Sbjct: 132 FRSFIFRVRVKVETYN 147

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Length = 119

 Score = 92.2 bits (229), Expect = 2e-22
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 11/114 (9%)

Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
           + +L P      +  RV   +  R+     G   +    + DE+G ++ T++        
Sbjct: 5   VGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA---- 60

Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
             I++ +V  I N          ++     +++    T +   +ED       +
Sbjct: 61  GSIKEGQVVKIENA-------WTTAFKGQVQLNAGSKTKIAEASEDGFPESSQI 107

>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A Length = 123

 Score = 83.4 bits (206), Expect = 3e-19
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 4/76 (5%)

Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
           DG+N  S  MLATQLN ++ +  LS   + QI R+IV+ +  G    R V+I++EL ++K
Sbjct: 51  DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 106

Query: 387 PGTEIGFKIGNPQPLN 402
               +G KIGNP P N
Sbjct: 107 SAEAVGVKIGNPVPYN 122

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Length = 115

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATM 495
            P  +   I  L        +  RV   +  R +   +G  GKL ++ + D++GE+RA  
Sbjct: 2   KPEHRMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVF 60

Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
           + +         E D V  I +  ++             E      +TV   +  E  +
Sbjct: 61  WTENIKLLKKFREGD-VIRIKDVNIRGGF------GGRKEAHLMPRSTVEVLDPLEHHH 112

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Length = 105

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDE 499
            T+ I  LSP     T +  V +  PI+E+  A GS GKL S  + DE+G IR T++++ 
Sbjct: 4   DTYNIGELSPGMT-ATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNL 62

Query: 500 CN 501
            +
Sbjct: 63  TD 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 5e-07
 Identities = 107/800 (13%), Positives = 211/800 (26%), Gaps = 280/800 (35%)

Query: 16  DYEMSFTHST--TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 73
           D+E          ++   ED           FV      ++      D+    +   E+ 
Sbjct: 8   DFETGEHQYQYKDILSVFEDA----------FVDNFDCKDVQ-----DMPKSILSKEEID 52

Query: 74  SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGK 133
            +    +  +   R    +   Q  +         E     N   +    + +   Q   
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLM---SPIKTEQRQP 105

Query: 134 TLSLSM--SSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ-RTG-------------GM 177
           ++   M       L  D          F+    +R +P  + R               G+
Sbjct: 106 SMMTRMYIEQRDRLYNDNQV-------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
            G  +G                 K    +    + V                + KV    
Sbjct: 159 LG--SG-----------------K----TWV-ALDVCL--------------SYKV---- 176

Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ-NEAESILGVTAQEVGESTED 296
                  +C  +F  F                 W+ L   N  E++L             
Sbjct: 177 -------QCKMDFKIF-----------------WLNLKNCNSPETVL------------- 199

Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIV 356
              + + L  Q      ++ +H   +  I   + I+S   +  +L  ++           
Sbjct: 200 --EMLQKLLYQIDPNWTSRSDH---SSNIK--LRIHS---IQAELRRLLKS--------- 240

Query: 357 QIKRYIVSGVSSGSATNRSVLIIL----ELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQ 412
             K Y               L++L                F +   + L T      T  
Sbjct: 241 --KPY-----------ENC-LLVLLNVQNAKAWNA-----FNLSC-KILLTTRFKQVTDF 280

Query: 413 TPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPI---RE 469
             AAT T+                  +   H  ++L+P + K ++  +  +  P    RE
Sbjct: 281 LSAATTTH------------------ISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPRE 321

Query: 470 WNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH--DMIEKDKV-YYISNC--TLKPAN 524
                 +     + ++       A    D    +     +  DK+   I +    L+PA 
Sbjct: 322 ---VL-TTNPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA- 369

Query: 525 KKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA----EISPDENIDVL 580
                   +Y   F    +V P                +P   ++    ++   + + V+
Sbjct: 370 --------EYRKMF-DRLSVFP--PS-------AH---IPTILLSLIWFDVIKSDVMVVV 408

Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL---------WGKEAETFDAS 631
                    S V  +  + T     I L  + +      L           K  ++ D  
Sbjct: 409 NKLHK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 632 NKPV-------IA--VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGS 682
              +       I   +K     E    + L R +            +   R + Q  R  
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPE---RMTLFRMV------------FLDFRFLEQKIRHD 510

Query: 683 NTTYKACPS-----QDCN--KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSV 735
           +T + A  S     Q     K  I  N+  Y  E+       F  ++   ++   +T+ +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKY--ERLVNAILDFLPKIEENLICSKYTDLL 568

Query: 736 WVTLFQNEAESILGVTAQEV 755
            + L   E E+I     ++V
Sbjct: 569 RIAL-MAEDEAIFEEAHKQV 587

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Length = 97

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDEC 500
            + I  L P     TI A V    P +E++   G+ G+L S+ L D++G IR T++N+  
Sbjct: 2   NYKISELMP-NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELA 60

Query: 501 N 501
           +
Sbjct: 61  D 61

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Length = 106

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
           I  +S      ++  ++T     +E+ +   +  ++   + D++  IR + F  +     
Sbjct: 6   IRDVSLSTPYVSVIGKITGIHK-KEYESDGTTKSVYQGYIEDDTARIRISSFGKQ----- 59

Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
             ++   V  I N  +          N    +S   S+ +   N +
Sbjct: 60  --LQDSDVVRIDNARVA-------QFNGYLSLSVGDSSRIESVNVN 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	786
4gop_C	444	Putative uncharacterized protein; OB fold, ssDNA b	100.0
4gop_C	444	Putative uncharacterized protein; OB fold, ssDNA b	100.0
1jmc_A	246	Protein (replication protein A (RPA)); human ssDNA	100.0
1l1o_C	181	Replication protein A 70 kDa DNA-binding subunit;	100.0
1l1o_C	181	Replication protein A 70 kDa DNA-binding subunit;	100.0
3u50_C	172	Telomerase-associated protein 82; TEB1, processivi	100.0
3u50_C	172	Telomerase-associated protein 82; TEB1, processivi	100.0
1jmc_A	246	Protein (replication protein A (RPA)); human ssDNA	99.97
1ynx_A	114	Replication factor-A protein 1; canonical OB fold,	99.96
2b29_A	123	Replication protein A 70 kDa DNA-binding subunit;	99.59
3dm3_A	105	Replication factor A; probably plays AN essential	99.5
1o7i_A	119	SSB, SSO2364, single stranded DNA binding protein;	99.45
3e0e_A	97	Replication protein A; structural genomics, PSI-2,	99.45
2k50_A	115	Replication factor A related protein; uncharacteri	99.38
1o7i_A	119	SSB, SSO2364, single stranded DNA binding protein;	99.37
3dm3_A	105	Replication factor A; probably plays AN essential	99.32
2k50_A	115	Replication factor A related protein; uncharacteri	99.23
2k75_A	106	Uncharacterized protein TA0387; closed beta barrel	99.2
3e0e_A	97	Replication protein A; structural genomics, PSI-2,	99.1
1wjj_A	145	Hypothetical protein F20O9.120; DNA-binding protei	99.05
2k75_A	106	Uncharacterized protein TA0387; closed beta barrel	98.87
2kbn_A	109	Conserved protein; nucleic acid binding protein, b	98.79
1wjj_A	145	Hypothetical protein F20O9.120; DNA-binding protei	98.44
2kbn_A	109	Conserved protein; nucleic acid binding protein, b	98.44
1xjv_A	294	Protection of telomeres 1; protein-DNA complex, si	98.18
1qzg_A	187	Protection of telomeres protein 1; protrein-DNA co	98.08
1ynx_A	114	Replication factor-A protein 1; canonical OB fold,	98.07
1xjv_A	294	Protection of telomeres 1; protein-DNA complex, si	98.07
1qzg_A	187	Protection of telomeres protein 1; protrein-DNA co	97.79
1jb7_A	495	Telomere-binding protein alpha subunit; DNA-protei	97.39
1miu_A	738	BRCA2, breast cancer type 2 susceptibility protein	97.23
3u58_A	213	Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1	97.14
3u4v_A	117	Telomerase-associated protein 82; TEB1, processivi	97.02
1jb7_A	495	Telomere-binding protein alpha subunit; DNA-protei	96.96
1se8_A	301	Single-strand binding protein; DNA binding protein	94.03
4hik_A	143	Protection of telomeres protein 1; specificity, pl	93.85
4gop_B	136	Putative uncharacterized protein; OB fold, ssDNA b	93.79
4gop_B	136	Putative uncharacterized protein; OB fold, ssDNA b	93.74
3kdf_D	132	Replication protein A 32 kDa subunit; wheat GERM c	93.47
2fxq_A	264	Single-strand binding protein; strand beta-sheet e	93.06
3kdf_D	132	Replication protein A 32 kDa subunit; wheat GERM c	92.51
3u4z_A	109	Telomerase-associated protein 82; TEB1, processivi	92.26
3kf6_A	159	Protein STN1; OB fold, chromosomal protein, DNA-bi	92.19
3ebe_A	200	Protein MCM10 homolog; OB-fold, zinc finger, CCCH,	90.6
2pi2_A	270	Replication protein A 32 kDa subunit; FULL-length	90.06
2pi2_A	270	Replication protein A 32 kDa subunit; FULL-length	89.54
3mxn_A	157	RECQ-mediated genome instability protein 1; bloom	88.98
1miu_A	738	BRCA2, breast cancer type 2 susceptibility protein	88.25
3mxn_A	157	RECQ-mediated genome instability protein 1; bloom	88.01
3rn5_A	208	Interferon-inducible protein AIM2; OB fold, DNA bi	87.98
3eiv_A	199	Single-stranded DNA-binding protein 2; DNA damage,	86.71
3kf6_A	159	Protein STN1; OB fold, chromosomal protein, DNA-bi	86.51
3vdy_A	116	SSB, single-stranded DNA-binding protein SSBB; OB	86.49
1txy_A	104	Primosomal replication protein N; OB fold, dimer,	85.82
3koj_A	108	Uncharacterized protein YCF41; single-strand bindi	85.46
2vw9_A	134	Single-stranded DNA binding protein; DNA replicati	85.06
3fhw_A	115	Primosomal replication protein N; PRIB BPR162 X-RA	84.78
1z9f_A	153	Single-strand binding protein; TM0604, single stra	84.24
3tqy_A	158	Single-stranded DNA-binding protein; DNA replicati	84.07
3u58_A	213	Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1	83.03
3i7f_A	548	Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi	82.98
3afp_A	168	Single-stranded DNA-binding protein; OB-fold, quat	82.11
3k8a_A	103	Putative primosomal replication protein; beta-barr	81.31
1eov_A	487	ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy	80.63
3ulp_A	124	Single-strand binding protein; OB-fold, DNA bindin	80.34

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}

Probab=100.00  E-value=1.5e-74  Score=653.51  Aligned_cols=344  Identities=42%  Similarity=0.779  Sum_probs=325.1

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V  520 (786)
                      +++||++|+|++++|+|+|||++||++|.|++++++|++|+|+|+|++|+|+||+|++++++|++.|++|+||+|++|.|
T Consensus         2 ~~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V   81 (444)
T 4gop_C            2 PIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISKARV   81 (444)
T ss_dssp             -CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEETHHHHHHTTTCCTTCEEEEESCEE
T ss_pred             CceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCCEEEEEEeHHHHHHHHHheecCCEEEEcCCEE
Confidence            58999999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             eccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCce
Q psy15132        521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT  600 (786)
Q Consensus       521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~  600 (786)
                      ++++++|++++|+|||+|+.+|.|+++++..  .+|.+.|+|++|++|.+...+..|||||+|++|+++.++++|++|++
T Consensus        82 ~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~~--~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~  159 (444)
T 4gop_C           82 NIAKKQFSNLQNEYEITFENSTEIEECTDAT--DVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRP  159 (444)
T ss_dssp             EECCGGGCSCCCSEEEEECTTCEEEECSCCS--SSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSC
T ss_pred             EecCCccccCCCCEEEEEcCCcEEEEccCcc--cCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCce
Confidence            9999999999999999999999999998865  79999999999999999888899999999999999999998877999


Q ss_pred             eeEEEEEEeeccccEEEEEEecccccccc----CCCCCEEEEEeEEEeecCCc-c-------------------------
Q psy15132        601 YMKRDITLVDQSQASVTMTLWGKEAETFD----ASNKPVIAVKAARVSEFQGN-L-------------------------  650 (786)
Q Consensus       601 ~~kr~i~l~D~s~~~i~~tLWg~~a~~~~----~~~~~vv~i~~~~V~~f~G~-L-------------------------  650 (786)
                      ..+|+++|+|+||.+|+|||||++|+.|+    ...++||+|+++||++|+|+ |                         
T Consensus       160 ~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~~ls~~~~s~i~inPdipea~~l~~w~~  239 (444)
T 4gop_C          160 VQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRGWYD  239 (444)
T ss_dssp             EEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSSEEECCTTCEEEESCSSHHHHHHHHHHH
T ss_pred             eeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCeEEeccccceEEECCCCHHHHHHHHHHH
Confidence            99999999999999999999999999998    78899999999999999987 4                         


Q ss_pred             ---------------------------------ccHHhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCcccccc
Q psy15132        651 ---------------------------------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK  697 (786)
Q Consensus       651 ---------------------------------~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kk  697 (786)
                                                       +||+|++++++|.+++++||.|+|+|+.|+.++|||+|||.++|+||
T Consensus       240 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C~kk  319 (444)
T 4gop_C          240 NDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKK  319 (444)
T ss_dssp             HHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTCCCB
T ss_pred             cCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccCCCc
Confidence                                             23556666677777889999999999999999999999997779999


Q ss_pred             ccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhHHHHhCCChHHHhccccChH-----HHHHhcCCe
Q psy15132        698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQ  772 (786)
Q Consensus       698 v~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~llG~sa~el~~~~~~~~-----~~~~~~~k~  772 (786)
                      |.+.++|.|+|++|++..++|.|||+|++.|+|+||++|+++|++.|++|||+||+||.+++++++     +++++.|++
T Consensus       320 v~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~~~d~~~~~~~~~~~~~k~  399 (444)
T 4gop_C          320 VNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRAANRM  399 (444)
T ss_dssp             EEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHHTTCHHHHHHHHHTTSSCE
T ss_pred             cccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHHhcChHHHHHHHHHhhCcE
Confidence            987778999999999999999999999999999999999999999999999999999999988764     889999999


Q ss_pred             EEEEEEEEeeccCC
Q psy15132        773 YIFRLRAKLEHYNK  786 (786)
Q Consensus       773 ~~f~v~~k~~~y~~  786 (786)
                      |+|+||+++|+|||
T Consensus       400 ~~f~~~~k~~~y~~  413 (444)
T 4gop_C          400 YMFNCRAKMDTFND  413 (444)
T ss_dssp             EEEEEEEEEEEETT
T ss_pred             EEEEEEEEeeeeCC
Confidence            99999999999997

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}

Probab=100.00  E-value=1.3e-64  Score=572.24  Aligned_cols=340  Identities=35%  Similarity=0.652  Sum_probs=304.7

Q ss_pred             ccccccCCCcCCCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCC
Q psy15132          2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ   81 (786)
Q Consensus         2 ~v~~A~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g   81 (786)
                      .|++|+++|++++|+|||.|+.+|.|++|+++  .+||.+.|+|++|++|.+.+.+.+|||||+|++|++++++++|++|
T Consensus        80 ~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~--~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g  157 (444)
T 4gop_C           80 RVNIAKKQFSNLQNEYEITFENSTEIEECTDA--TDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQ  157 (444)
T ss_dssp             EEEECCGGGCSCCCSEEEEECTTCEEEECSCC--SSSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTC
T ss_pred             EEEecCCccccCCCCEEEEEcCCcEEEEccCc--ccCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCC
Confidence            57899999999999999999999999999764  5799999999999999998889999999999999999999988778


Q ss_pred             ceeeEEEEEEEeCCCCEEEEEeccccccccc----CCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHh
Q psy15132         82 KTYMKRDITLVDQSQASVTMTLWGKEAETFD----ASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQG  157 (786)
Q Consensus        82 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~----~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~  157 (786)
                      ++..+|+|+|.|+||.+|+|||||++|..|+    .+.++||+|+++||++|+| ++||++++|+|++|||+|||.+|++
T Consensus       158 ~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G-~~ls~~~~s~i~inPdipea~~l~~  236 (444)
T 4gop_C          158 RPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGG-RSLSMFSSSTMLINPDITESHVLRG  236 (444)
T ss_dssp             SCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTS-SEEECCTTCEEEESCSSHHHHHHHH
T ss_pred             ceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCC-eEEeccccceEEECCCCHHHHHHHH
Confidence            8899999999999999999999999999998    6789999999999999976 6999999999999999999999999


Q ss_pred             hhhccC-CCceeeecccc-------CCCCCCCcchhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCC
Q psy15132        158 WFSTQT-NTRFEPVSQRT-------GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC  229 (786)
Q Consensus       158 w~~~~~-~~~~~~~s~~~-------~~~~~~~~~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C  229 (786)
                      ||++.+ ...|.+++...       .+.+.....+++||+||++.+++.+++++||+|+|+|+.|+.++|||+|||++.|
T Consensus       237 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C  316 (444)
T 4gop_C          237 WYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGC  316 (444)
T ss_dssp             HHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTC
T ss_pred             HHHcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccC
Confidence            999887 34566665543       1111223457899999999999988999999999999999999999999995559


Q ss_pred             CcceeeCCCceeecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccCCCh-----HHHHHhc
Q psy15132        230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKAL  304 (786)
Q Consensus       230 ~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~-----~~~~~~~  304 (786)
                      +|||.+.++|.|+|++|+++.++|.|||+|++.|+|+||++|+++||+.|++|||++|+||.++.+++     ..+.++.
T Consensus       317 ~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~~~d~~~~~~~~~~~~  396 (444)
T 4gop_C          317 NKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRAA  396 (444)
T ss_dssp             CCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHHTTCHHHHHHHHHTTS
T ss_pred             CCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHHhcChHHHHHHHHHhh
Confidence            99999777889999999999999999999999999999999999999999999999999999987653     3588899


Q ss_pred             CCEEEEEEeeecccccCccccCCCcceeeEEEeecccccccccCCc
Q psy15132        305 FTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTL  350 (786)
Q Consensus       305 ~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L  350 (786)
                      |++|+|+|++++++|+|+.++   ++   +++-+.++|+..++..|
T Consensus       397 ~k~~~f~~~~k~~~y~~~~r~---~~---~v~~~~~~d~~~~~~~l  436 (444)
T 4gop_C          397 NRMYMFNCRAKMDTFNDTARV---RY---TISRAAPVDFAKAGMEL  436 (444)
T ss_dssp             SCEEEEEEEEEEEEETTEEEE---EE---EEEEEEECCHHHHHHHH
T ss_pred             CcEEEEEEEEEeeeeCCeeEE---EE---EEEEeeeCCHHHHHHHH
Confidence            999999999999999998876   44   67888888887766544

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A

Probab=100.00  E-value=5.8e-44  Score=373.06  Aligned_cols=210  Identities=49%  Similarity=0.898  Sum_probs=200.9

Q ss_pred             CCceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       439 ~~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      ++.++||++|+|++++|+|+|||++|+++|.|++++++|++|+|+|+|++|+|+|++|++++++|++.|++|+||+|++|
T Consensus         5 ~~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~~G~vy~i~~~   84 (246)
T 1jmc_A            5 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKG   84 (246)
T ss_dssp             --CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEECC
T ss_pred             ccceEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHHHhhhhcccCCEEEECCC
Confidence            45789999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             EEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCC
Q psy15132        519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ  598 (786)
Q Consensus       519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g  598 (786)
                      .|++++++|++++|+|||+|+.+|.|++|++.+  ++|.+.|+|++|++|.+...+..|||||+|++|+++.++++|++|
T Consensus        85 ~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~~--~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g  162 (246)
T 1jmc_A           85 TLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNN  162 (246)
T ss_dssp             EEEECCGGGCCCCCSEEEECCTTCEEEECCSCS--CCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTT
T ss_pred             EEEEcccCcccCCCCEEEEEcCCcEEEEccCcc--cCCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCC
Confidence            999999999999999999999999999998876  799999999999999998788999999999999999999998779


Q ss_pred             ceeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc-c
Q psy15132        599 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN-L  650 (786)
Q Consensus       599 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~-L  650 (786)
                      ++..+|++.|+|+||.+|+|||||++|+.|+...++||+|+++||++|+|+ |
T Consensus       163 ~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv~i~~~~v~~f~g~~l  215 (246)
T 1jmc_A          163 REVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSL  215 (246)
T ss_dssp             EEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEEEEEEEECTTSSEE
T ss_pred             CccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEEEEEEEEEEecCCeEE
Confidence            999999999999999999999999999999999999999999999999887 5

>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3

Probab=100.00  E-value=1.3e-36  Score=300.33  Aligned_cols=163  Identities=43%  Similarity=0.749  Sum_probs=143.6

Q ss_pred             cchhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeE
Q psy15132        182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV  261 (786)
Q Consensus       182 ~~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~  261 (786)
                      ..+++||+||++++||.+++|+||+|+|+|++|+.++|||+|||++.|+|||.++++|.|+|++|++++++|.|||+|++
T Consensus         4 ~~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~   83 (181)
T 1l1o_C            4 NTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSV   83 (181)
T ss_dssp             CCCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEE
T ss_pred             ccceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEE
Confidence            35689999999999999999999999999999999999999999556999999878899999999999999999999999


Q ss_pred             EEEecCCcEEEEeehHHHHHHhCCChhhhhccCCChH-----HHHHhcCCEEEEEEeeecccccCccccCCCcceeeEEE
Q psy15132        262 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAM  336 (786)
Q Consensus       262 ~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~~-----~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~  336 (786)
                      .|+||||++|+++||+.|++|||+||+||.++.++++     .|.+++|++|.|+|++++++||++.++   ++   +++
T Consensus        84 ~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~---~~---~v~  157 (181)
T 1l1o_C           84 NIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRI---KA---TVM  157 (181)
T ss_dssp             EEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----C---EE---EEE
T ss_pred             EEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEE---EE---EEE
Confidence            9999999999999999999999999999999876643     578899999999999999999998776   44   677


Q ss_pred             eecccccccccCCc
Q psy15132        337 LATQLNDIITDGTL  350 (786)
Q Consensus       337 la~~ln~~v~~~~L  350 (786)
                      -..++|+..++..|
T Consensus       158 ~~~~vd~~~e~~~L  171 (181)
T 1l1o_C          158 DVKPVDYREYGRRL  171 (181)
T ss_dssp             EEEECCHHHHHHHH
T ss_pred             EeeeCCHHHHHHHH
Confidence            88889887776554

>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3

Probab=100.00  E-value=1.1e-34  Score=286.54  Aligned_cols=137  Identities=48%  Similarity=0.886  Sum_probs=129.8

Q ss_pred             cccHHhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEE
Q psy15132        650 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG  729 (786)
Q Consensus       650 L~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~  729 (786)
                      .+||+|++++++|.+++|+||+|+|+|+.|+.++|||+|||+++|+|||++.++|.|+|++|++.+++|.|||+|++.|+
T Consensus         7 ~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~i~   86 (181)
T 1l1o_C            7 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIA   86 (181)
T ss_dssp             BCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEEEE
T ss_pred             eEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEEEE
Confidence            48999999999999999999999999999999999999999777999999878899999999999999999999999999


Q ss_pred             ecCCcEEEEEehhhHHHHhCCChHHHhccccChH-----HHHHhcCCeEEEEEEEEeeccCC
Q psy15132        730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK  786 (786)
Q Consensus       730 D~Tg~~~~~~F~~~ae~llG~sa~el~~~~~~~~-----~~~~~~~k~~~f~v~~k~~~y~~  786 (786)
                      |+||++|+++|++.|++|||+||+||.++.++++     +|+++.|++|+|++++++|+|||
T Consensus        87 D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~  148 (181)
T 1l1o_C           87 DFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYND  148 (181)
T ss_dssp             CSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC--
T ss_pred             eCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCC
Confidence            9999999999999999999999999999988764     88999999999999999999996

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A

Probab=99.97  E-value=1.1e-30  Score=272.47  Aligned_cols=160  Identities=42%  Similarity=0.811  Sum_probs=151.4

Q ss_pred             ccccccCCCcCCCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCC
Q psy15132          2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ   81 (786)
Q Consensus         2 ~v~~A~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g   81 (786)
                      .|++|+++|++++|+|||.|+.+|.|++|++.  .++|.+.|+|++|++|.+++.+.+|||||+|+++++++++++|++|
T Consensus        85 ~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~--~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g  162 (246)
T 1jmc_A           85 TLKIANKQFTAVKNDYEMTFNNETSVMPCEDD--HHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNN  162 (246)
T ss_dssp             EEEECCGGGCCCCCSEEEECCTTCEEEECCSC--SCCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTT
T ss_pred             EEEEcccCcccCCCCEEEEEcCCcEEEEccCc--ccCCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCC
Confidence            47899999999999999999999999999764  4799999999999999998889999999999999999999998778


Q ss_pred             ceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhc
Q psy15132         82 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST  161 (786)
Q Consensus        82 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~  161 (786)
                      ++..+|+|.|.|+||.+|+|||||++|..|+...++||+|+++||++| |+++|+++++|+|++|||+|||++|++||++
T Consensus       163 ~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv~i~~~~v~~f-~g~~ls~~~~s~i~inpd~pe~~~l~~w~~~  241 (246)
T 1jmc_A          163 REVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDA  241 (246)
T ss_dssp             EEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEEEEEEEECT-TSSEEECCSSCEEESSCCSHHHHHHHHHHHH
T ss_pred             CccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEEEEEEEEEEec-CCeEEEecCcceEEECCCCHHHHHHHHHHHh
Confidence            899999999999999999999999999999988999999999999999 6799999999999999999999999999998


Q ss_pred             cCC
Q psy15132        162 QTN  164 (786)
Q Consensus       162 ~~~  164 (786)
                      +|.
T Consensus       242 ~g~  244 (246)
T 1jmc_A          242 EGQ  244 (246)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            763

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.2e-29  Score=228.01  Aligned_cols=112  Identities=45%  Similarity=0.865  Sum_probs=108.4

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      .+++||++|+|++++|+|+|||++||++|.|++.+|+|++|+++|+|++|+|+||+|++++++|++.|++|+||+|++|.
T Consensus         2 ~~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~   81 (114)
T 1ynx_A            2 RPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKAK   81 (114)
T ss_dssp             CCBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEESCE
T ss_pred             CceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHHHHHHHhhcccCcEEEECCcE
Confidence            46899999999999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcccccCCceEEEEccccEEEEccCCC
Q psy15132        520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDE  551 (786)
Q Consensus       520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~  551 (786)
                      |++++++|++++|+|||+|+++|.|++|+|+.
T Consensus        82 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~  113 (114)
T 1ynx_A           82 LQPAKPQFTNLTHPYELNLDRDTVIEECFDES  113 (114)
T ss_dssp             EEECCTTTSSSSSCEEEEECSSCEEEESCCCC
T ss_pred             EEECCCCcccCCCCEEEEECCCCEEEECCCCC
Confidence            99999999999999999999999999998753

>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A

Probab=99.59  E-value=1.1e-15  Score=139.72  Aligned_cols=79  Identities=41%  Similarity=0.658  Sum_probs=71.7

Q ss_pred             ccCccccCCCcceeeEE-EeecccccccccCCcccceEEEEceeEeeeeecCCCCccEEEEEEeeeeeccCcccCccccC
Q psy15132        319 YNGTKKIPDGVNINSFA-MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGN  397 (786)
Q Consensus       319 y~~~~~~sDG~~~~~~~-~la~~ln~~v~~~~L~~~~iikl~~~~~~~~~~~~~~~~~~~ii~~~~v~~~~~~~~~~ig~  397 (786)
                      -.+|+++|||.|++ ++ ||++|+|+++++|+|++|+||||++|+++.+++|    |+++||+++||+.++++++.+||+
T Consensus        43 ~RyRl~lSDG~~~~-~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~~~----k~vliIl~levl~~~e~~~~~iG~  117 (123)
T 2b29_A           43 PRYRLLMSDGLNTL-SSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLKSAEAVGVKIGN  117 (123)
T ss_dssp             CEEEEEEECSSEEE-EEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECSSS----CEEEEEEEEEEEECSTTSCSCCSC
T ss_pred             ceEEEEEECcchhe-eeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEecCC----cEEEEEEeeEEeecccccCCccCC
Confidence            35689999999976 55 9999999999999999999999999999999644    899999999999997778889999


Q ss_pred             CccCC
Q psy15132        398 PQPLN  402 (786)
Q Consensus       398 p~~~~  402 (786)
                      |.+++
T Consensus       118 P~~~~  122 (123)
T 2b29_A          118 PVPYN  122 (123)
T ss_dssp             CEECC
T ss_pred             CccCC
Confidence            99875

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=6.1e-14  Score=125.08  Aligned_cols=99  Identities=23%  Similarity=0.286  Sum_probs=88.4

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      ..++||++|.|+ .+|+|.|||+.++++|.|.+.+| +++++++.|.|++|.|++|+|++.++.   .|++|++|.| ++
T Consensus         3 ~~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~---~l~~Gdvv~i-~g   77 (105)
T 3dm3_A            3 KDTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDI---DVGRGDYVRV-RG   77 (105)
T ss_dssp             -CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGS---CCCTTCEEEE-EE
T ss_pred             ccceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccccc---ccCCCCEEEE-EE
Confidence            357899999999 79999999999999999987655 589999999999999999999998875   7999999999 99


Q ss_pred             EEeccCCcccccCCceEEEEccccEEEEccC
Q psy15132        519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNE  549 (786)
Q Consensus       519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d  549 (786)
                      +|+.+.      .+.+||+++..|.|++++.
T Consensus        78 ~vk~~~------~g~~eL~~g~~~~i~~~~~  102 (105)
T 3dm3_A           78 YIREGY------YGGLECTANYVEILKKGEK  102 (105)
T ss_dssp             EEEECT------TSSEEEEEEEEEEEECCC-
T ss_pred             EEEEcc------CCCEEEEeCCceEEEeccc
Confidence            998864      3689999999999998864

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3

Probab=99.45  E-value=5.8e-13  Score=122.15  Aligned_cols=109  Identities=18%  Similarity=0.267  Sum_probs=94.7

Q ss_pred             eeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132        442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK  521 (786)
Q Consensus       442 ~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~  521 (786)
                      +.+|++|.|+.++|.+.++|..++++|.|.+.+|.+++++++|.|++|+|++++|++.++    .|++|++|.|++++|.
T Consensus         2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~   77 (119)
T 1o7i_A            2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAG----SIKEGQVVKIENAWTT   77 (119)
T ss_dssp             BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEE
T ss_pred             cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChhh----cCCCCCEEEEEeEEEE
Confidence            468999999988999999999999999998777667899999999999999999999874    4899999999999997


Q ss_pred             ccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCccccccc
Q psy15132        522 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI  571 (786)
Q Consensus       522 ~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~  571 (786)
                      ..       ++.++|++++.+.|+++++.          +|..+++|.+.
T Consensus        78 ~~-------~g~~qL~i~~~~~i~~~~~~----------~~~~~~~l~~~  110 (119)
T 1o7i_A           78 AF-------KGQVQLNAGSKTKIAEASED----------GFPESSQIPEN  110 (119)
T ss_dssp             EE-------TTEEEEEECTTCEEEECCCT----------TCCCGGGSCCC
T ss_pred             Ee-------CCEEEEEECCCEEEEEcCCc----------CCCcHHHhhhc
Confidence            64       47799999999999998642          35567777765

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A

Probab=99.45  E-value=2.3e-13  Score=119.86  Aligned_cols=93  Identities=26%  Similarity=0.360  Sum_probs=80.2

Q ss_pred             eeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132        443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK  521 (786)
Q Consensus       443 ~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~  521 (786)
                      .||++|+|+ .+|+|.|||+.++++|.|.+.+| +++++++.|.|++|+|++|+|++.++.   .|++|++|.| ++.|+
T Consensus         3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~   77 (97)
T 3e0e_A            3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADF---EVKKGDIAEV-SGYVK   77 (97)
T ss_dssp             ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGC---CCCTTCEEEE-EEEEE
T ss_pred             eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcccc---ccCCCCEEEE-EEEEE
Confidence            589999999 89999999999999999987555 589999999999999999999999875   7999999999 88886


Q ss_pred             ccCCcccccCCceEEEEccccEEEEc
Q psy15132        522 PANKKFSSINNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       522 ~a~~~y~~~~~~yei~f~~~T~I~~~  547 (786)
                      ..       .+.+||++++++.|+.+
T Consensus        78 ~~-------~~~~el~~g~~~~i~k~   96 (97)
T 3e0e_A           78 QG-------YSGLEISVDNIGIIEKS   96 (97)
T ss_dssp             EC---------CEEEEEEEEEEEECC
T ss_pred             Ec-------CCeEEEEECCCcEEEEC
Confidence            65       24889999999999864

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=99.38  E-value=1.5e-12  Score=118.69  Aligned_cols=105  Identities=12%  Similarity=0.226  Sum_probs=91.7

Q ss_pred             eEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc-CCCCcEEE
Q psy15132         42 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIA  120 (786)
Q Consensus        42 ~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~Vi~  120 (786)
                      .|+|+++++|.   .+..+|++|+|+++++++++++|+ |++...++++|.|+|| +|++|+||+.+..+. ...++++.
T Consensus         4 ~~~~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~-G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~~~l~~G~vv~   78 (115)
T 2k50_A            4 EHRMDTISKLE---EGAETPVTGRVMKISSPRTFTTRK-GREGKLANVIIADDTG-ELRAVFWTENIKLLKKFREGDVIR   78 (115)
T ss_dssp             TTCCCCTTTCC---TTCEEEEEEEEEEECCCEECCCTT-SSCCEEEEEEEEETTE-EEEEEEETTGGGGGGTCCTTSEEE
T ss_pred             ccceEEHHHCC---CCCEeEEEEEEEECCCceEEEcCC-CCEEEEEEEEEEeCCC-eEEEEEeCchhhhhhcCCCCCEEE
Confidence            46778887775   578899999999999999888775 6556789999999999 999999999987654 47899999


Q ss_pred             EEeEEEee-eCCceeeeecceeEEEECCCchH
Q psy15132        121 VKAARVSE-FQGGKTLSLSMSSVLSLNPDIPE  151 (786)
Q Consensus       121 i~~~kv~~-f~g~~~ls~~~~s~i~~npd~pe  151 (786)
                      |++++|++ |+|..+|++...|.+..+||+..
T Consensus        79 i~g~~v~~~f~g~~qL~~~~~~~i~~~~~~~~  110 (115)
T 2k50_A           79 IKDVNIRGGFGGRKEAHLMPRSTVEVLDPLEH  110 (115)
T ss_dssp             EEEEEECCCSSSSCEEEECTTCCEEEESSCCC
T ss_pred             EEeeEEccccCCeEEEEECCCceEEECCcccc
Confidence            99999987 99999999999999999998753

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3

Probab=99.37  E-value=2.5e-12  Score=117.88  Aligned_cols=104  Identities=19%  Similarity=0.327  Sum_probs=88.5

Q ss_pred             ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeE
Q psy15132         45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA  124 (786)
Q Consensus        45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~  124 (786)
                      |++|++|..  ....+|++|+|+++++++++++|+ |+ ...+++.|.|+|| +|++|||++.|..|  ..++||.++++
T Consensus         2 f~~I~dL~~--~~~~v~~~~~V~~~~~~~~~~~k~-G~-~~~~~~~l~D~TG-~I~~tlW~~~~~~~--~~G~vv~i~~g   74 (119)
T 1o7i_A            2 EEKVGNLKP--NMESVNVTVRVLEASEARQIQTKN-GV-RTISEAIVGDETG-RVKLTLWGKHAGSI--KEGQVVKIENA   74 (119)
T ss_dssp             BCCGGGCCT--TCSSEEEEEEEEEECCCEEECCTT-CC-EEEEEEEEEETTE-EEEEEEEGGGTTCC--CTTCEEEEEEE
T ss_pred             cEEHHHCcC--CCCcEEEEEEEEECCCCeeEEecC-CC-EEEEEEEEEeCCC-EEEEEEECChhhcC--CCCCEEEEEeE
Confidence            566777754  234799999999999999988874 65 6789999999999 69999999999765  67899999999


Q ss_pred             EEeeeCCceeeeecceeEEEECC--CchHHHHH
Q psy15132        125 RVSEFQGGKTLSLSMSSVLSLNP--DIPECHKL  155 (786)
Q Consensus       125 kv~~f~g~~~ls~~~~s~i~~np--d~pe~~~l  155 (786)
                      +|.+|+|..+|++...|.|..+|  ++|++.+|
T Consensus        75 ~v~~~~g~~qL~i~~~~~i~~~~~~~~~~~~~l  107 (119)
T 1o7i_A           75 WTTAFKGQVQLNAGSKTKIAEASEDGFPESSQI  107 (119)
T ss_dssp             EEEEETTEEEEEECTTCEEEECCCTTCCCGGGS
T ss_pred             EEEEeCCEEEEEECCCEEEEEcCCcCCCcHHHh
Confidence            99999999999999999999887  46776664

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=1.2e-11  Score=110.23  Aligned_cols=94  Identities=15%  Similarity=0.212  Sum_probs=80.8

Q ss_pred             eecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEe
Q psy15132         44 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA  123 (786)
Q Consensus        44 ~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~  123 (786)
                      +|++|++|..   +..+||+|+|++++++++++++ +|++..+|+++|.|+|| +|++||||+.|.. ....+++|.| .
T Consensus         4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~-~G~~~~v~~~~l~D~TG-~IrvtlW~~~a~~-~l~~Gdvv~i-~   76 (105)
T 3dm3_A            4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRA-DGSIGKLKSFIVRDETG-SIRVTLWDNLTDI-DVGRGDYVRV-R   76 (105)
T ss_dssp             CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECT-TSCEEEEEEEEEEETTE-EEEEEEEGGGGGS-CCCTTCEEEE-E
T ss_pred             cceEHHHCCC---CCeEEEEEEEEECCCceEEEcC-CCCeeEEEEEEEECCCC-cEEEEEECccccc-ccCCCCEEEE-E
Confidence            4677888764   4789999999999999999876 58788999999999999 8999999999986 5678899999 7


Q ss_pred             EEEeee-CCceeeeecceeEEE
Q psy15132        124 ARVSEF-QGGKTLSLSMSSVLS  144 (786)
Q Consensus       124 ~kv~~f-~g~~~ls~~~~s~i~  144 (786)
                      ++++.+ +|+.+|+++..|.|.
T Consensus        77 g~vk~~~~g~~eL~~g~~~~i~   98 (105)
T 3dm3_A           77 GYIREGYYGGLECTANYVEILK   98 (105)
T ss_dssp             EEEEECTTSSEEEEEEEEEEEE
T ss_pred             EEEEEccCCCEEEEeCCceEEE
Confidence            777776 468999999888765

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=99.23  E-value=6e-11  Score=108.08  Aligned_cols=104  Identities=20%  Similarity=0.332  Sum_probs=89.5

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      .++.||++|.|+.. .+|.++|..++++|.|.+.+| ++.++++.|.|++|+|++++|++.++.+ +.|++|++|.|++.
T Consensus         5 ~~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~   82 (115)
T 2k50_A            5 HRMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLL-KKFREGDVIRIKDV   82 (115)
T ss_dssp             TCCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGG-GTCCTTSEEEEEEE
T ss_pred             cceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhh-hcCCCCCEEEEEee
Confidence            35679999999865 599999999999999977665 3799999999999999999999987765 77999999999999


Q ss_pred             EEeccCCcccccCCceEEEEccccEEEEccCCC
Q psy15132        519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE  551 (786)
Q Consensus       519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~  551 (786)
                      .|+..   |+   +.++|.+...+.|++++|..
T Consensus        83 ~v~~~---f~---g~~qL~~~~~~~i~~~~~~~  109 (115)
T 2k50_A           83 NIRGG---FG---GRKEAHLMPRSTVEVLDPLE  109 (115)
T ss_dssp             EECCC---SS---SSCEEEECTTCCEEEESSCC
T ss_pred             EEccc---cC---CeEEEEECCCceEEECCccc
Confidence            88653   43   67999999999999997643

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}

Probab=99.20  E-value=5.4e-11  Score=106.39  Aligned_cols=95  Identities=16%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      ++++|++|.|+...+++.+||+.+++.| ..+ +| ++++.++.|.|++|+|++++|++.       |++|++|.|.|+.
T Consensus         2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~~k-~G~~~~v~~~~l~DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~   72 (106)
T 2k75_A            2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-YES-DGTTKSVYQGYIEDDTARIRISSFGKQ-------LQDSDVVRIDNAR   72 (106)
T ss_dssp             CBCCSTTCCTTCSEEEEEEEEEEEEEEE-EEE-TTEEEEEEEEEEECSSCEEEEEEESSC-------CCTTEEEEEEEEE
T ss_pred             CcEEHHHcCCCCceEEEEEEEEEccccc-ccc-CCCeeEEEEEEEEcCCCeEEEEEEcCc-------cCCCCEEEEEeeE
Confidence            3578999999988899999999999987 332 33 356999999999999999999987       9999999999999


Q ss_pred             EeccCCcccccCCceEEEEccccEEEEccCCC
Q psy15132        520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDE  551 (786)
Q Consensus       520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~  551 (786)
                      +...       ++.++|++++.+.|+++.+..
T Consensus        73 v~~~-------~g~~~L~v~~~~~I~~~~~~~   97 (106)
T 2k75_A           73 VAQF-------NGYLSLSVGDSSRIESVNVNI   97 (106)
T ss_dssp             EEEE-------TTEEEEEECTTSEEEECCSCC
T ss_pred             EeEE-------CCEEEEEECCcEEEEECCCCC
Confidence            8763       477899999999999997643

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A

Probab=99.10  E-value=7.5e-10  Score=97.36  Aligned_cols=91  Identities=15%  Similarity=0.218  Sum_probs=73.6

Q ss_pred             CccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEE
Q psy15132         47 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV  126 (786)
Q Consensus        47 ~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv  126 (786)
                      +++||   .++..++++|.|+++++++++.+++ |.+...+++.|.|+|| +|++|||+++|.. ..+.+++|.+ .++|
T Consensus         4 kI~dl---~~g~~v~i~~~V~~~~~~r~~~~~~-G~~~~v~~~~l~DeTG-~I~~tlW~~~~~~-~i~~Gdvv~i-~g~v   76 (97)
T 3e0e_A            4 KISEL---MPNLSGTINAEVVTAYPKKEFSRKD-GTKGQLKSLFLKDDTG-SIRGTLWNELADF-EVKKGDIAEV-SGYV   76 (97)
T ss_dssp             CGGGC---CTTEEEEEEEEEEEECCCEEEC-----CCEEEEEEEEEETTE-EEEEEEEGGGGGC-CCCTTCEEEE-EEEE
T ss_pred             EHHHC---CCCCcEEEEEEEEECCCceEEEcCC-CCeeEEEEEEEECCCC-cEEEEEECCcccc-ccCCCCEEEE-EEEE
Confidence            34555   4568999999999999999987764 7677899999999999 9999999999986 5578999999 6799


Q ss_pred             eeeCCceeeeecceeEEE
Q psy15132        127 SEFQGGKTLSLSMSSVLS  144 (786)
Q Consensus       127 ~~f~g~~~ls~~~~s~i~  144 (786)
                      ..|.|...|+++..+.|.
T Consensus        77 ~~~~~~~el~~g~~~~i~   94 (97)
T 3e0e_A           77 KQGYSGLEISVDNIGIIE   94 (97)
T ss_dssp             EEC--CEEEEEEEEEEEE
T ss_pred             EEcCCeEEEEECCCcEEE
Confidence            999999999999888764

>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3

Probab=99.05  E-value=7.5e-10  Score=103.62  Aligned_cols=99  Identities=12%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcc---eecCCCC-------CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccC
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIR---EWNNARG-------SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEK  509 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r---~~~~~~~-------~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~  509 (786)
                      ..+++|++|.|+..+.++.|||+..+.++   .+.+.+|       .+++.++.|.|++|.|+.|+|+++++    .|++
T Consensus        14 p~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~~----~l~~   89 (145)
T 1wjj_A           14 PVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVD----LMKP   89 (145)
T ss_dssp             CSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHHH----HTCT
T ss_pred             ccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCcC----cCCC
Confidence            34789999999998899999999999888   5544334       67899999999999999999999775    4889


Q ss_pred             CcEEEEcceEEeccCCcccccCCceEEEEccccEEEEccC
Q psy15132        510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE  549 (786)
Q Consensus       510 G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d  549 (786)
                      |++|.|.|+.++..       ...++|.+++++.|+..++
T Consensus        90 Gd~v~i~na~v~~~-------~G~~~L~vgk~g~Ie~~~e  122 (145)
T 1wjj_A           90 GATVILRNSRIDMF-------KGTMRLGVDKWGRIEATGA  122 (145)
T ss_dssp             TCEEEEEEEEEEEE-------TTEEEEEECTTCCBCCCSC
T ss_pred             CCEEEEeccEEEeE-------CCEEEEEECCCEEEEECCC
Confidence            99999999999764       3678999999999988764

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}

Probab=98.87  E-value=1.6e-08  Score=90.26  Aligned_cols=92  Identities=18%  Similarity=0.268  Sum_probs=77.7

Q ss_pred             EeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEE
Q psy15132         43 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK  122 (786)
Q Consensus        43 ~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~  122 (786)
                      |+|++++||..  ....++++|.|.++++.+  .++ +|++...+++.|.|+|| +|.+|||++.     ...|.+|-++
T Consensus         1 ~~~~kI~dl~p--g~~~v~v~~~V~~~~~~~--~~k-~G~~~~v~~~~l~DeTG-~I~~tlW~~~-----l~~Gdvv~i~   69 (106)
T 2k75_A            1 SDLVKIRDVSL--STPYVSVIGKITGIHKKE--YES-DGTTKSVYQGYIEDDTA-RIRISSFGKQ-----LQDSDVVRID   69 (106)
T ss_dssp             CCBCCSTTCCT--TCSEEEEEEEEEEEEEEE--EEE-TTEEEEEEEEEEECSSC-EEEEEEESSC-----CCTTEEEEEE
T ss_pred             CCcEEHHHcCC--CCceEEEEEEEEEccccc--ccc-CCCeeEEEEEEEEcCCC-eEEEEEEcCc-----cCCCCEEEEE
Confidence            46777888754  124599999999999877  344 47666789999999999 9999999998     5789999999


Q ss_pred             eEEEeeeCCceeeeecceeEEEE
Q psy15132        123 AARVSEFQGGKTLSLSMSSVLSL  145 (786)
Q Consensus       123 ~~kv~~f~g~~~ls~~~~s~i~~  145 (786)
                      ++++..|+|..+|+++..|.|..
T Consensus        70 ng~v~~~~g~~~L~v~~~~~I~~   92 (106)
T 2k75_A           70 NARVAQFNGYLSLSVGDSSRIES   92 (106)
T ss_dssp             EEEEEEETTEEEEEECTTSEEEE
T ss_pred             eeEEeEECCEEEEEECCcEEEEE
Confidence            99999999999999999888864

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A

Probab=98.79  E-value=3.2e-08  Score=88.83  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V  520 (786)
                      ++.+|++|.|+..+.++.+||+.++..|      .......++|.|++|+|++|+|++.   -.+.|++|++|.|.|+.+
T Consensus         4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~~------~~~~~~~~~l~DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v   74 (109)
T 2kbn_A            4 QLTKIVDIVENGQWANLKAKVIQLWENT------HESISQVGLLGDETGIIKFTIWKNA---ELPLLEQGESYLLRSVVV   74 (109)
T ss_dssp             CBCCTTTCCSTTCEEEEEEEEEEEEECC------CSSEEEEEEEECTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEE
T ss_pred             CceEHHHCCCCCCcEEEEEEEEEeEcCC------CCeEEEEEEEECCCCeEEEEEECcc---cccccCCCCEEEEEEEEE
Confidence            4678999999877889999999765422      2346678999999999999999943   125799999999999999


Q ss_pred             eccCCcccccCCceEEEEccccEEEEccCC
Q psy15132        521 KPANKKFSSINNDYEMSFTHSTTVIPCNED  550 (786)
Q Consensus       521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d~  550 (786)
                      +..       +...+|++++.+.|++.++.
T Consensus        75 ~~~-------~G~~~L~v~~~~~I~~~~~~   97 (109)
T 2kbn_A           75 GEY-------NDRFQVQVNKNSSIEKLSEP   97 (109)
T ss_dssp             EEE-------TTEEEEEECSSSEEEECSSC
T ss_pred             EEE-------CCEEEEEECCceEEEECCCc
Confidence            774       36789999999999987654

>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3

Probab=98.44  E-value=5.1e-07  Score=84.43  Aligned_cols=100  Identities=12%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             EeecCccchhccCCCCceEEEEEEEEeccceeEee--ccCCc------eeeEEEEEEEeCCCCEEEEEecccccccccCC
Q psy15132         43 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG--KTNQK------TYMKRDITLVDQSQASVTMTLWGKEAETFDAS  114 (786)
Q Consensus        43 ~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~--k~~g~------~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~  114 (786)
                      =.|++++||..-  ...+++.|.|.+++++..++.  +.+|.      +...++..|.|+|| +|.+|||++++..+  .
T Consensus        14 p~~~kI~dL~pg--~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG-~I~ftlW~e~~~~l--~   88 (145)
T 1wjj_A           14 PVFVKVEQLKPG--TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVDLM--K   88 (145)
T ss_dssp             CSSCCSTTCCTT--CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHHHT--C
T ss_pred             ccceEHHHcCCC--CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCc-EEEEEEecCCcCcC--C
Confidence            357788888642  346999999999998652222  22343      56678999999999 99999999988764  4


Q ss_pred             CCcEEEEEeEEEeeeCCceeeeecceeEEEECC
Q psy15132        115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNP  147 (786)
Q Consensus       115 ~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~np  147 (786)
                      .|.+|-|+++.++.|+|..+|+++..+.|...+
T Consensus        89 ~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~  121 (145)
T 1wjj_A           89 PGATVILRNSRIDMFKGTMRLGVDKWGRIEATG  121 (145)
T ss_dssp             TTCEEEEEEEEEEEETTEEEEEECTTCCBCCCS
T ss_pred             CCCEEEEeccEEEeECCEEEEEECCCEEEEECC
Confidence            799999999999999999999999888876543

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A

Probab=98.44  E-value=1.7e-06  Score=77.50  Aligned_cols=90  Identities=13%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecc-cccccccCCCCcEEEEEe
Q psy15132         45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG-KEAETFDASNKPVIAVKA  123 (786)
Q Consensus        45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg-~~a~~~~~~~~~Vi~i~~  123 (786)
                      |++++||..  .+..+++.|.|+++++.     + ++.  ..+.+.|.|+|| +|++|+|+ +.+..  ...+.+|-+++
T Consensus         5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~-----~-~~~--~~~~~~l~DeTG-~I~~t~W~~~~~~~--~~~G~~V~i~n   71 (109)
T 2kbn_A            5 LTKIVDIVE--NGQWANLKAKVIQLWEN-----T-HES--ISQVGLLGDETG-IIKFTIWKNAELPL--LEQGESYLLRS   71 (109)
T ss_dssp             BCCTTTCCS--TTCEEEEEEEEEEEEEC-----C-CSS--EEEEEEEECTTC-CEEEEEEGGGCCCC--CCTTCEEEEEE
T ss_pred             ceEHHHCCC--CCCcEEEEEEEEEeEcC-----C-CCe--EEEEEEEECCCC-eEEEEEECcccccc--cCCCCEEEEEE
Confidence            344555543  26789999999999863     2 232  456799999999 99999999 44432  36799999999


Q ss_pred             EEEeeeCCceeeeecceeEEEECC
Q psy15132        124 ARVSEFQGGKTLSLSMSSVLSLNP  147 (786)
Q Consensus       124 ~kv~~f~g~~~ls~~~~s~i~~np  147 (786)
                      +++.+|+|..+|+++..+.|..-+
T Consensus        72 ~~v~~~~G~~~L~v~~~~~I~~~~   95 (109)
T 2kbn_A           72 VVVGEYNDRFQVQVNKNSSIEKLS   95 (109)
T ss_dssp             EEEEEETTEEEEEECSSSEEEECS
T ss_pred             EEEEEECCEEEEEECCceEEEECC
Confidence            999999999999999988886543

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A

Probab=98.18  E-value=3.2e-05  Score=81.85  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=75.5

Q ss_pred             eEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccC--CCCcEE
Q psy15132         42 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVI  119 (786)
Q Consensus        42 ~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~--~~~~Vi  119 (786)
                      .|.|++|++|.   .+..+||||+|++++++..  +  +|+ -....|+|.|.|...|.|.+|.+..+.+..  ..|+||
T Consensus         3 ~y~y~~l~~l~---~~~~vnvigVV~~~~~p~~--s--~G~-d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII   74 (294)
T 1xjv_A            3 NYIYTPLNQLK---GGTIVNVYGVVKFFKPPYL--S--KGT-DYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIV   74 (294)
T ss_dssp             CCCCCCGGGCC---SSEEEEEEEEEEEEEEEEE--C--SSS-SEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEE
T ss_pred             cceEEEHHHhh---CCCeeEEEEEEEEcCCCcc--C--CCC-eEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEE
Confidence            47889999873   4889999999999987743  2  354 468899999999999999999988877763  789999


Q ss_pred             EEEeEEEeeeCCceeeeecceeEE
Q psy15132        120 AVKAARVSEFQGGKTLSLSMSSVL  143 (786)
Q Consensus       120 ~i~~~kv~~f~g~~~ls~~~~s~i  143 (786)
                      .++.++|..|+|...+....+..+
T Consensus        75 ~l~~vki~~~~g~~~~v~~~~~s~   98 (294)
T 1xjv_A           75 RFHRLKIQVYKKETQGITSSGFAS   98 (294)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEEECCeEEEEccCCeEE
Confidence            999999999998777644443333

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A

Probab=98.08  E-value=2.6e-05  Score=75.56  Aligned_cols=95  Identities=8%  Similarity=0.153  Sum_probs=76.8

Q ss_pred             EeecCccchhc-cCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCC----CCEEEEEecccccccccC--CC
Q psy15132         43 YCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS----QASVTMTLWGKEAETFDA--SN  115 (786)
Q Consensus        43 ~~f~~~~~i~~-~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s----~~~i~~tLWg~~a~~~~~--~~  115 (786)
                      +.|+++.++.+ +..+..|||||||++.+++..  +. .|+.-....|+|.|+|    +..|.|.++.+..+.+..  ..
T Consensus        27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~--S~-rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~  103 (187)
T 1qzg_A           27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQ--SL-HGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQV  103 (187)
T ss_dssp             EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEE--CS-STTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCST
T ss_pred             eeEEEHHHHHhhccCCCEEEEEEEEEEccCcee--cC-CCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCC
Confidence            67888888764 567899999999999998743  20 2543578899999998    668999999998888874  68


Q ss_pred             CcEEEEEeEEEeeeCCceeeeecce
Q psy15132        116 KPVIAVKAARVSEFQGGKTLSLSMS  140 (786)
Q Consensus       116 ~~Vi~i~~~kv~~f~g~~~ls~~~~  140 (786)
                      |+||.+..++|..|+|...+-....
T Consensus       104 GDIIlL~rvkiq~~~g~~~~v~~~~  128 (187)
T 1qzg_A          104 GQPLLLHQITLRSYRDRTQGLSKDQ  128 (187)
T ss_dssp             TCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEECCeEEEEEcCc
Confidence            9999999999999999887744443

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.07  E-value=2.1e-05  Score=71.00  Aligned_cols=99  Identities=14%  Similarity=0.168  Sum_probs=77.8

Q ss_pred             ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc--CCCCcEEEEE
Q psy15132         45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVK  122 (786)
Q Consensus        45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~Vi~i~  122 (786)
                      +++|++|....  ...-|.|.|+.+++++.+..++ | +....++.|.|++| +|++|+|++.|..|.  ...|.|+-|.
T Consensus         4 ~~~Is~L~p~~--~~w~I~~rV~~k~~~r~~~~~~-~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is   78 (114)
T 1ynx_A            4 IFAIEQLSPYQ--NVWTIKARVSYKGEIKTWHNQR-G-DGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVS   78 (114)
T ss_dssp             BCCGGGCCTTT--CCCEEEEEEEEEEEEEEEECSS-C-EEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEE
T ss_pred             eEEHHHCCCCC--CceEEEEEEEEeccceEEecCC-C-CceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEEC
Confidence            56677775432  3478999999999999987653 4 56678999999999 999999999999985  3789999999


Q ss_pred             eEEEee----e---CCceeeeecceeEEEECCC
Q psy15132        123 AARVSE----F---QGGKTLSLSMSSVLSLNPD  148 (786)
Q Consensus       123 ~~kv~~----f---~g~~~ls~~~~s~i~~npd  148 (786)
                      +++|..    |   .+...+++...|.|..-+|
T Consensus        79 ~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d  111 (114)
T 1ynx_A           79 KAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD  111 (114)
T ss_dssp             SCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred             CcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence            999876    3   2355777888887776554

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A

Probab=98.07  E-value=5.6e-05  Score=79.97  Aligned_cols=191  Identities=8%  Similarity=0.101  Sum_probs=117.8

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCc-EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~-I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      .++||++|.. .....|.|.|+..+..+.   .+|.....+|.|.|++-. |++.+|.+..+.+-...++|||+.+.+++
T Consensus         5 ~y~~l~~l~~-~~~vnvigVV~~~~~p~~---s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~vk   80 (294)
T 1xjv_A            5 IYTPLNQLKG-GTIVNVYGVVKFFKPPYL---SKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLK   80 (294)
T ss_dssp             CCCCGGGCCS-SEEEEEEEEEEEEEEEEE---CSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEE
T ss_pred             eEEEHHHhhC-CCeeEEEEEEEEcCCCcc---CCCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEEEE
Confidence            5789999975 456799999997755443   245668899999998743 99999988666665566999999999999


Q ss_pred             EeccCCcccccCCceEEEEccccEEEEccCCCCCC-CCcc---ee-------------------------eccCcccccc
Q psy15132        520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN-MPSV---KY-------------------------CFVPLKTIAE  570 (786)
Q Consensus       520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~-iP~~---~~-------------------------~f~~i~dl~~  570 (786)
                      ++..+..       ..+..+....+-..+...... .|..   .|                         .|..|+||  
T Consensus        81 i~~~~g~-------~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~~~~~~~L~di--  151 (294)
T 1xjv_A           81 IQVYKKE-------TQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDV--  151 (294)
T ss_dssp             EEEETTE-------EEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---CCCCGGGC--
T ss_pred             EEEECCe-------EEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCCCCceeEHHHc--
Confidence            9865443       222223222222222211001 1111   11                         23344444  


Q ss_pred             cCCCceeeEEEEEEEcccc--eeEEee-cCCceeeEEEEEEee--------c------cccEEEEEEeccccccc-cCCC
Q psy15132        571 ISPDENIDVLGVCIDAAEL--SSVTGK-TNQKTYMKRDITLVD--------Q------SQASVTMTLWGKEAETF-DASN  632 (786)
Q Consensus       571 ~~~~~~vDViGvV~~V~~~--~~i~~k-~~g~~~~kr~i~l~D--------~------s~~~i~~tLWg~~a~~~-~~~~  632 (786)
                       ..+.++|+++.|+.+...  ..+..+ .||+......+...+        .      ...++.+++|++.|.-. ....
T Consensus       152 -~~~~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~~~~lk~  230 (294)
T 1xjv_A          152 -QPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKV  230 (294)
T ss_dssp             -CSSCEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHHHHHCCT
T ss_pred             -ccCCeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHHHhcCCC
Confidence             446899999999987533  111111 234433222222111        1      11379999999988422 3688


Q ss_pred             CCEEEEEeEEEee
Q psy15132        633 KPVIAVKAARVSE  645 (786)
Q Consensus       633 ~~vv~i~~~~V~~  645 (786)
                      |..|.|.+++++.
T Consensus       231 Gd~V~l~Nv~~k~  243 (294)
T 1xjv_A          231 GSFLRIYSLHTKL  243 (294)
T ss_dssp             TCEEEEEEEEEEE
T ss_pred             CcEEEEeeeEEEe
Confidence            9999999988764

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A

Probab=97.79  E-value=7.4e-05  Score=72.39  Aligned_cols=86  Identities=9%  Similarity=0.253  Sum_probs=71.0

Q ss_pred             eeccCccccccc-CCCceeeEEEEEEEcccceeEEeec-CCceeeEEEEEEeecc----ccEEEEEEeccccccccC--C
Q psy15132        560 YCFVPLKTIAEI-SPDENIDVLGVCIDAAELSSVTGKT-NQKTYMKRDITLVDQS----QASVTMTLWGKEAETFDA--S  631 (786)
Q Consensus       560 ~~f~~i~dl~~~-~~~~~vDViGvV~~V~~~~~i~~k~-~g~~~~kr~i~l~D~s----~~~i~~tLWg~~a~~~~~--~  631 (786)
                      +.|+++.++.+. ..+..|+|||+|+++++..    ++ .|+.-....+.|.|.|    +..|.|.++.+..+.+..  .
T Consensus        27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~----~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~  102 (187)
T 1qzg_A           27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSR----QSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQ  102 (187)
T ss_dssp             EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEE----ECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCS
T ss_pred             eeEEEHHHHHhhccCCCEEEEEEEEEEccCce----ecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCC
Confidence            567888887654 5688999999999998874    22 3664557899999998    568999999998888873  7


Q ss_pred             CCCEEEEEeEEEeecCCc
Q psy15132        632 NKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       632 ~~~vv~i~~~~V~~f~G~  649 (786)
                      .|+||.+.+++|+.|+|+
T Consensus       103 ~GDIIlL~rvkiq~~~g~  120 (187)
T 1qzg_A          103 VGQPLLLHQITLRSYRDR  120 (187)
T ss_dssp             TTCEEEEEEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEEECCe
Confidence            899999999999999995

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A

Probab=97.39  E-value=0.0061  Score=68.52  Aligned_cols=287  Identities=14%  Similarity=0.121  Sum_probs=163.2

Q ss_pred             CCceeeecccCC-CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC-C------c-E-----EEEEcchhHHHhh
Q psy15132        439 VVQTHPIVSLSP-YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-G------E-I-----RATMFNDECNRFH  504 (786)
Q Consensus       439 ~~~~~~I~~L~p-~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~-G------~-I-----~at~~~~~~~kf~  504 (786)
                      .-.+++|+++.. ......|.|-|+.-+..+.   .+|.....+|.|.|++ .      + |     .+.+|....+.+ 
T Consensus        35 ~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~---T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L-  110 (495)
T 1jb7_A           35 KYEYVELAKASLTSAQPQHFYAVVIDATFPYK---TNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL-  110 (495)
T ss_dssp             -CCBCCTTTSCSSCCSCEEEEEEEEEECCCEE---CSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS-
T ss_pred             CCccEEHHHHHhccCCeEEEEEEEeecCCcee---cCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC-
Confidence            346889997752 3456799999997776653   3455678899999964 2      1 7     999998765444 


Q ss_pred             hhc-cCCcEEEEcceEEeccCCccccc-CCce---EEEEccccEEE--Ec--c--CCCCCCCCcc----eeec-------
Q psy15132        505 DMI-EKDKVYYISNCTLKPANKKFSSI-NNDY---EMSFTHSTTVI--PC--N--EDEVGNMPSV----KYCF-------  562 (786)
Q Consensus       505 ~~l-~~G~vy~is~~~V~~a~~~y~~~-~~~y---ei~f~~~T~I~--~~--~--d~~~~~iP~~----~~~f-------  562 (786)
                      +.+ .+|||+.+.+++|+..++...-+ ...+   -..|.......  ++  +  +.+  ..|..    .|.|       
T Consensus       111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~--~~P~~~S~~~~~~~~~d~~~  188 (495)
T 1jb7_A          111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSD--TTPFSFSSKHATIEKNEISI  188 (495)
T ss_dssp             CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCT--TSCSEESSSCCCCCTTHHHH
T ss_pred             CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcc--cCCccccCCCccCCHHHHHH
Confidence            445 79999999999998776543321 1111   13333322000  00  0  000  11211    0111       


Q ss_pred             --------------------cCccccc-ccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEe
Q psy15132        563 --------------------VPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW  621 (786)
Q Consensus       563 --------------------~~i~dl~-~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLW  621 (786)
                                          .++..|. +...+.++|++|.|+.+....       +   .+-.+.+-|.|+..- ++++
T Consensus       189 v~~LR~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv~~~~~d-------~---~~~~L~VwDgT~~~~-~~~~  257 (495)
T 1jb7_A          189 LQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELD-------E---YTNELKLKDASGQVF-YTLS  257 (495)
T ss_dssp             HHHHHHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEEEEEECS-------S---SEEEEEEEETTCCEE-EEEE
T ss_pred             HHHHHHHHHhcccccccccccchhhhhhhhccCCceeEEEEEeEEeccC-------C---CeEEEEEEeCCCCCc-ceee
Confidence                                1222333 333468999999999985431       1   245677888887532 2333


Q ss_pred             cccccccc-CCCCCEEEEEeEEEeecCCc-----------c------ccHH-hHHh------------------------
Q psy15132        622 GKEAETFD-ASNKPVIAVKAARVSEFQGN-----------L------LLMR-EIQD------------------------  658 (786)
Q Consensus       622 g~~a~~~~-~~~~~vv~i~~~~V~~f~G~-----------L------~ti~-e~~~------------------------  658 (786)
                      ..  ..|. ..+|.|+.|...+..+-.+.           |      ..+. |+++                        
T Consensus       258 ~~--~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w~ni~~~~~~sk~~ke~~~~~l~~~~~~~~~~~~~~~~~~~~l  335 (495)
T 1jb7_A          258 LK--LKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFIQSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVL  335 (495)
T ss_dssp             ET--TTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEEEEEEEECTTCHHHHHHHHHSCCCCHHHHHHTTSSSCSSCEEC
T ss_pred             cc--ccCCceeeEEEEEEecCccchhhhhhhhhccccccceeEEcccchhhhhhhhcccchhhhhhhhcccccCCCCCcC
Confidence            22  1122 23477877776655543221           0      0010 1000                        


Q ss_pred             -------hcCCC--------CC--CC-----ceEEEEEEEEEEecC---ceEEeCCCCccccccccccCCceeeeCCCCC
Q psy15132        659 -------QQLGM--------GD--KA-----DYCSVRGIIQVFRGS---NTTYKACPSQDCNKKVIDQNNGMYRCEKCNK  713 (786)
Q Consensus       659 -------~~l~~--------~~--~~-----~~~~v~a~I~~i~~~---~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~  713 (786)
                             .+.+.        .+  .+     .-|.+...|+.+-+-   .|.=+-|+  .|.+. .. ..|     .|++
T Consensus       336 T~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P~~i~df~~~~~~--~~~~~-~s-~~g-----~~~~  406 (495)
T 1jb7_A          336 TEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDR--KTKKS-SS-LKG-----ASGK  406 (495)
T ss_dssp             EEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEESSSGGGGEEEEET--TTTEE-EC-STT-----CGGG
T ss_pred             CeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecCCCHHHhhhhhcc--ccccc-cc-ccc-----ccCC
Confidence                   00000        00  11     127888888877552   45544477  57764 22 122     2333


Q ss_pred             cCCceeEEEEEEEEEEecC-------CcEEEEEehhhHHHHhCCChHHHhc
Q psy15132        714 EFNTFTYRLILPVMIGDWT-------NSVWVTLFQNEAESILGVTAQEVGE  757 (786)
Q Consensus       714 ~~~~~~~ry~l~~~i~D~T-------g~~~~~~F~~~ae~llG~sa~el~~  757 (786)
                      .    .+.|++.+.|.|.|       +.+.+.++|+.|.++|++.|.+|.+
T Consensus       407 ~----~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~l~a~nL~~  453 (495)
T 1jb7_A          407 G----DNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKADNLHK  453 (495)
T ss_dssp             C----EEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTSSCCCCTTT
T ss_pred             C----CceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecCCChHhhhc
Confidence            2    34677788999999       9999999999999999999998854

>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A

Probab=97.23  E-value=0.0021  Score=74.23  Aligned_cols=153  Identities=10%  Similarity=0.133  Sum_probs=108.3

Q ss_pred             eEEEEEEEcCC---CcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceEEEEccccEEEEccCCCCCC
Q psy15132        478 KLFSIDLLDES---GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN  554 (786)
Q Consensus       478 ~~~~~~L~D~~---G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~  554 (786)
                      .++.+-+.|-.   .+.-.++|+..-+ ..+.|+||++|.|.+.......  .+.-....+|+-.+.|.+.+++..+. .
T Consensus       511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~--~~~~~~~lqLtAtk~T~~~~L~~~~~-~  586 (738)
T 1miu_A          511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSK--SKFERPSIQLTATKRTQYQQLPVSSE-T  586 (738)
T ss_dssp             CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCC--CSSSCCSCEEEEEEEEEEEEECCCHH-H
T ss_pred             eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCC--ccCccceEEEeecccceeEECCcchh-h
Confidence            34555566632   3688999997644 6778999999999997654432  22223567899999999999864321 1


Q ss_pred             CCc-ce-eeccCcccccc---cCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccccc
Q psy15132        555 MPS-VK-YCFVPLKTIAE---ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD  629 (786)
Q Consensus       555 iP~-~~-~~f~~i~dl~~---~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~  629 (786)
                      +++ +. =..++|++|.+   .....-+|++|+|+.|+...       |   ..-.+.|.|.+..-+-+-.|+..+++  
T Consensus       587 ~~~~~~pR~~~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~-------~---~~~~vylsD~~~nll~Ikf~~~l~eD--  654 (738)
T 1miu_A          587 LLQVYQPRESLHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI-------G---LAPLVYLSDECLNLLVVKFGIDLNED--  654 (738)
T ss_dssp             HTTTCCCCCBCCSGGGGSSSCCTTTTEEEEEEEEEEEECCT-------T---SCCEEEEECSSSCEEEEEESSCCCSC--
T ss_pred             hccccCCcceeeHHHhcCccccCCCCceeEEEEEEEEcccC-------c---ccceEEEEcCCCcEEEEEEecCchhh--
Confidence            111 11 12356777776   35678899999999996532       2   23378899999888899999999876  


Q ss_pred             CCCCCEEEEEeEEEeec
Q psy15132        630 ASNKPVIAVKAARVSEF  646 (786)
Q Consensus       630 ~~~~~vv~i~~~~V~~f  646 (786)
                      ..++.+|++.+...+..
T Consensus       655 ~~~~~~va~sNL~~r~~  671 (738)
T 1miu_A          655 IKPRVLIAASNLQCQPE  671 (738)
T ss_dssp             CCSSCEEEEEEEECCSC
T ss_pred             CccccEEEEeeeEeecc
Confidence            88899999999877643

>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}

Probab=97.14  E-value=0.04  Score=49.37  Aligned_cols=159  Identities=18%  Similarity=0.300  Sum_probs=109.8

Q ss_pred             eeeecccCCCCCc--eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC-cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        442 THPIVSLSPYQNK--WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       442 ~~~I~~L~p~~~~--w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G-~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      ...|+.|..+.++  +...+||+.|+.  +|.+.. +.+.|-++-.|... +|...+|.. +|.-|..|++|+-|++.++
T Consensus        11 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinlsfwqk-vdqsyqtlkvgqyyyfigg   86 (213)
T 3u58_A           11 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINLSFWQK-VDQSYQTLKVGQYYYFIGG   86 (213)
T ss_dssp             EECGGGCCTTSCTTSEEEEEEEEEECC--CBCCST-TCCBEEEEEECTTSCEEEEEECSS-HHHHHHHCCTTCEEEEESC
T ss_pred             hhhhhhhhhccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheeeeceEEEEEcc
Confidence            3568889888765  588899999986  777754 46889999999887 699999986 5777889999999999999


Q ss_pred             EEeccCCcccccCCceEEEEcc-ccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecC
Q psy15132        519 TLKPANKKFSSINNDYEMSFTH-STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN  597 (786)
Q Consensus       519 ~V~~a~~~y~~~~~~yei~f~~-~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~  597 (786)
                      .|+.-       .+..|+.|.- +-.|.+-+.-..+.-     .-.-|+++... ......|++.|+.+...        
T Consensus        87 evkqf-------knnlelkfkfgdyqiipketlggsgg-----stllisevlkt-skqylsvlaqvvdiqss--------  145 (213)
T 3u58_A           87 EVKQF-------KNNLELKFKFGDYQIIPKETLGGSGG-----STLLISEVLKT-SKQYLSVLAQVVDIQSS--------  145 (213)
T ss_dssp             EEEEC-------SSSEEEEECSSCCEEEESTTTTCSTT-----CCBCHHHHTTC-CCSEEEEEEEEEEEEEC--------
T ss_pred             cHhhh-------ccceEEEEecCceEEechhhcCCCCC-----ceeehHHHHHH-hHHHHHHHHHhhccccC--------
Confidence            99763       4677888773 455655433210011     11224455443 34577888888776432        


Q ss_pred             CceeeEEEEEEeeccc-cEEEEEEeccccccc
Q psy15132        598 QKTYMKRDITLVDQSQ-ASVTMTLWGKEAETF  628 (786)
Q Consensus       598 g~~~~kr~i~l~D~s~-~~i~~tLWg~~a~~~  628 (786)
                      .+   ...+.|.|.|. ..+.+.++-+.+-++
T Consensus       146 dk---nirlkicdnscnqelkvvifpdlcyew  174 (213)
T 3u58_A          146 DK---NIRLKICDNSCNQELKVVIFPDLCYEW  174 (213)
T ss_dssp             SS---CEEEEEECTTCSCCEEEEECTTTTGGG
T ss_pred             CC---ceEEEeecccccceeEEEEchhHhhHh
Confidence            11   13466788884 478899888766443

>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}

Probab=97.02  E-value=0.0066  Score=49.60  Aligned_cols=87  Identities=23%  Similarity=0.399  Sum_probs=70.7

Q ss_pred             eeeecccCCCCCc--eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC-cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        442 THPIVSLSPYQNK--WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       442 ~~~I~~L~p~~~~--w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G-~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      ...|+.|..+.++  +...+||+.|+.  +|.|.. +.+.|-++-.|... +|...+|.. +|.-|..|++|+-|++.++
T Consensus        15 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinmsfwqk-vdqsyqtlkvgqyyyfigg   90 (117)
T 3u4v_A           15 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINMSFWQK-VDQSYQTLKVGQYYYFIGG   90 (117)
T ss_dssp             EECGGGCCTTCCTTSCEEEEEEEEECC--CEECTT-SCEEEEEEEECTTSCEEEEEEESS-THHHHTTCCTTCEEEEESC
T ss_pred             heehhhhhcccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheEeeceEEEEEcc
Confidence            4578889888765  588999999986  777754 46899999999887 699999986 5777889999999999999


Q ss_pred             EEeccCCcccccCCceEEEEc
Q psy15132        519 TLKPANKKFSSINNDYEMSFT  539 (786)
Q Consensus       519 ~V~~a~~~y~~~~~~yei~f~  539 (786)
                      .|+.-       .+..|+.|.
T Consensus        91 evkqf-------knnlelkfk  104 (117)
T 3u4v_A           91 EVKQF-------KNNLELKFK  104 (117)
T ss_dssp             EEEEE-------TTEEEEEEE
T ss_pred             chhhh-------ccceEEEEe
Confidence            99763       356777765

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A

Probab=96.96  E-value=0.0031  Score=70.93  Aligned_cols=104  Identities=22%  Similarity=0.272  Sum_probs=77.8

Q ss_pred             ceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCC-------EE-----EEEecccc
Q psy15132         40 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA-------SV-----TMTLWGKE  107 (786)
Q Consensus        40 ~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~-------~i-----~~tLWg~~  107 (786)
                      ...|.|++|+++.. ..+..|||||||++++++..  +  .|+ -....|+|.|.|-.       .+     .|.++.+.
T Consensus        33 ~~~y~y~~L~~a~~-~~~~~VnviGVVvd~~~P~~--T--~G~-D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~  106 (495)
T 1jb7_A           33 GHKYEYVELAKASL-TSAQPQHFYAVVIDATFPYK--T--NQE-RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKR  106 (495)
T ss_dssp             ---CCBCCTTTSCS-SCCSCEEEEEEEEEECCCEE--C--SSS-CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESS
T ss_pred             cCCCccEEHHHHHh-ccCCeEEEEEEEeecCCcee--c--CCC-eEEEEEEEEeCCCCcccccccccccCceEEEEECCC
Confidence            34589999998874 35789999999999998862  2  254 46889999998765       37     99999988


Q ss_pred             cccccC--CCCcEEEEEeEEEeeeCCceeeeec--ceeEE-EECCCc
Q psy15132        108 AETFDA--SNKPVIAVKAARVSEFQGGKTLSLS--MSSVL-SLNPDI  149 (786)
Q Consensus       108 a~~~~~--~~~~Vi~i~~~kv~~f~g~~~ls~~--~~s~i-~~npd~  149 (786)
                      .+.+..  ..|+||.++.++|..|+|...+...  ..|.| ++.++.
T Consensus       107 ~e~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~  153 (495)
T 1jb7_A          107 FEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDK  153 (495)
T ss_dssp             GGGSCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSS
T ss_pred             hHHCCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCc
Confidence            777764  4699999999999999998775433  22454 555433

>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3

Probab=94.03  E-value=1.1  Score=46.94  Aligned_cols=180  Identities=10%  Similarity=0.104  Sum_probs=96.4

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC------c-EEEEEcchhHHHhhhh-ccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG------E-IRATMFNDECNRFHDM-IEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G------~-I~at~~~~~~~kf~~~-l~~G~vy~is~  517 (786)
                      +++..|.+||...-.+|...+  | ..+.+|.|+      |++|      + |++++|+.+++.+... |+.|+.++|.+
T Consensus         5 mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG   81 (301)
T 1se8_A            5 MNHVYLIGALARDPELRYTGN--G-MAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG   81 (301)
T ss_dssp             EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred             eeEEEEEEEECCCceEEECCC--C-CEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence            467899999999888887643  2 256666653      2334      2 8999999999999998 99999999997


Q ss_pred             e-EEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeec
Q psy15132        518 C-TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT  596 (786)
Q Consensus       518 ~-~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~  596 (786)
                      . +.+....+=......++|..+   .|+.+....     ...  --....+.-......|-++|.|..--++  -.+. 
T Consensus        82 ~L~~r~~~dkdG~~r~~~ev~a~---~i~~l~~~~-----~~~--~d~~gg~rm~~mmN~V~L~GrL~~dPel--r~t~-  148 (301)
T 1se8_A           82 TLEYRQWEAPEGGKRSAVNVKAL---RMEQLGTQP-----ELI--QDAGGGVRMSGAMNEVLVLGNVTRDPEI--RYTP-  148 (301)
T ss_dssp             EEEEEEEC-----CEEEEEEEEE---EEEECSSCC-----CEE--ECTTSCEEEETCEEEEEEEEEECSCCEE--EECT-
T ss_pred             EEEeeeEECCCCCEEEEEEEEEe---EEEEeeccc-----ccc--cccccccchhcceeEEEEEEEECcCCEE--EECC-
Confidence            4 332322110000112233322   233332111     000  0000000000011246788888653222  2223 


Q ss_pred             CCceeeEEEEEE----eeccc------cEEEEEEecccccccc-CCCCCEEEEEe-EEEeecC
Q psy15132        597 NQKTYMKRDITL----VDQSQ------ASVTMTLWGKEAETFD-ASNKPVIAVKA-ARVSEFQ  647 (786)
Q Consensus       597 ~g~~~~kr~i~l----~D~s~------~~i~~tLWg~~a~~~~-~~~~~vv~i~~-~~V~~f~  647 (786)
                      +|+.+..-.|-.    .|..|      .-+.|++||..|+.+. ...|..|.+.| .+.+.|.
T Consensus       149 ~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~l~KG~~V~V~GrL~~~~y~  211 (301)
T 1se8_A          149 AGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNEGWT  211 (301)
T ss_dssp             TCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTCCTTCEEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHhcCCCCEEEEEEEEeeeeEE
Confidence            366544333322    23223      2599999999988653 57788777775 3455563

>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*

Probab=93.85  E-value=0.68  Score=42.82  Aligned_cols=99  Identities=14%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             ccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeC----------------------CCCEEEEEecc
Q psy15132         48 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ----------------------SQASVTMTLWG  105 (786)
Q Consensus        48 ~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~----------------------s~~~i~~tLWg  105 (786)
                      |+-|..+..+.++|++|.|+.+-.-        +   .+-.+.+.|-                      ...++.||||+
T Consensus         5 f~llkdv~~~~F~Dl~~qVv~~~~~--------~---~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd   73 (143)
T 4hik_A            5 FSLLSQITPHQRCSFYAQVIKTWYS--------D---KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWD   73 (143)
T ss_dssp             CCCGGGCCSSCEEEEEEEEEEEEEC--------S---SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECH
T ss_pred             hhhHHhCCCCCeEEEEEEEEEEEcC--------C---CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEEC
Confidence            4445566679999999999985321        0   1222333332                      12389999999


Q ss_pred             ccccccc--CCCCcEEEEEeEEEeeeCCc-eeeeeccee-------EEEECCCchHHHHHHh
Q psy15132        106 KEAETFD--ASNKPVIAVKAARVSEFQGG-KTLSLSMSS-------VLSLNPDIPECHKLQG  157 (786)
Q Consensus       106 ~~a~~~~--~~~~~Vi~i~~~kv~~f~g~-~~ls~~~~s-------~i~~npd~pe~~~l~~  157 (786)
                      .+|.-..  ...|..|.|++++++.-.++ ..-.+...+       ...++|+.|...+|..
T Consensus        74 ~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~  135 (143)
T 4hik_A           74 EHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKS  135 (143)
T ss_dssp             HHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHH
T ss_pred             cHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHH
Confidence            9986542  46789999999988765433 222332221       2246776688877744

>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}

Probab=93.79  E-value=0.23  Score=45.77  Aligned_cols=62  Identities=11%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc-----cccCCCCCEEEEEeEEEeecCCc
Q psy15132        575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE-----TFDASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~-----~~~~~~~~vv~i~~~~V~~f~G~  649 (786)
                      ..|.++|+|.++..-           .....+.|.|.|| .|.+.+|.+..+     .-....|.+|.+.| +++.|+|+
T Consensus        37 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G-~v~~f~g~  103 (136)
T 4gop_B           37 GQLTFVAVVRNISRN-----------ATNVAYSVEDGTG-QIEVRQWLDSSSDDSSKASEIRNNVYVRVLG-TLKSFQNR  103 (136)
T ss_dssp             CEEEEEEEEEEEEEC-----------SSEEEEEEECSSC-EEEEEEECC--------CCSCCTTCEEEEEE-EEEEETTE
T ss_pred             EEEEEEEEEEEEEec-----------CCeEEEEEECCCC-CEEEEEecccCCcccccccccCCCCEEEEEE-EEEEeCCE
Confidence            468999999987431           1366899999999 899999987543     11256788888877 58889996

>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}

Probab=93.74  E-value=0.32  Score=44.76  Aligned_cols=68  Identities=12%  Similarity=0.224  Sum_probs=49.1

Q ss_pred             CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccc----c-cCCCCcEEEEEeEEEeeeCCc
Q psy15132         58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET----F-DASNKPVIAVKAARVSEFQGG  132 (786)
Q Consensus        58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~----~-~~~~~~Vi~i~~~kv~~f~g~  132 (786)
                      ..|.++|+|.++.+-           .....++|-|.|| .|.+.+|.+....    . ....+.+|-+.| +++.|+|.
T Consensus        37 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G-~v~~f~g~  103 (136)
T 4gop_B           37 GQLTFVAVVRNISRN-----------ATNVAYSVEDGTG-QIEVRQWLDSSSDDSSKASEIRNNVYVRVLG-TLKSFQNR  103 (136)
T ss_dssp             CEEEEEEEEEEEEEC-----------SSEEEEEEECSSC-EEEEEEECC--------CCSCCTTCEEEEEE-EEEEETTE
T ss_pred             EEEEEEEEEEEEEec-----------CCeEEEEEECCCC-CEEEEEecccCCcccccccccCCCCEEEEEE-EEEEeCCE
Confidence            478999999998421           1356799999999 8999999875431    1 125677877777 57899998


Q ss_pred             eeeeec
Q psy15132        133 KTLSLS  138 (786)
Q Consensus       133 ~~ls~~  138 (786)
                      +.|...
T Consensus       104 ~qi~~~  109 (136)
T 4gop_B          104 RSISSG  109 (136)
T ss_dssp             EEEEES
T ss_pred             EEEEEE
Confidence            888754

>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B

Probab=93.47  E-value=0.64  Score=42.44  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=53.5

Q ss_pred             CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccc---c-cCCCCcEEEEEeEEEeeeCCce
Q psy15132         58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET---F-DASNKPVIAVKAARVSEFQGGK  133 (786)
Q Consensus        58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~---~-~~~~~~Vi~i~~~kv~~f~g~~  133 (786)
                      ..|.++|+|.++.+-           .....++|-|.||.+|++..|.+....   . ....+.+|-+.| +++.|+|.+
T Consensus        32 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G-~l~~f~g~~   99 (132)
T 3kdf_D           32 SQVTIVGIIRHAEKA-----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNKK   99 (132)
T ss_dssp             CEEEEEEEEEEEEEC-----------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEE-EEEEETTEE
T ss_pred             EEEEEEEEEEEEEEc-----------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEE-EEEeECCEE
Confidence            468899999998421           135679999999989999999876432   1 125677777777 588899988


Q ss_pred             eeeecceeEEEECCCchHH
Q psy15132        134 TLSLSMSSVLSLNPDIPEC  152 (786)
Q Consensus       134 ~ls~~~~s~i~~npd~pe~  152 (786)
                      .|...   .|..-.|..|.
T Consensus       100 qi~~~---~ir~v~d~Nei  115 (132)
T 3kdf_D          100 SLVAF---KIMPLEDMNEF  115 (132)
T ss_dssp             EEEEE---EEEECSSTHHH
T ss_pred             EEEEE---EEEEcCCccHH
Confidence            88753   44444455443

>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A

Probab=93.06  E-value=2  Score=44.10  Aligned_cols=179  Identities=12%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC------c-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG------E-IRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      +++..|.|||.+--.+|...+  | ..+.+|.|+      |+.|      . |++++|+.+++.....|+.|+.+.|.+.
T Consensus         5 ~N~v~L~G~l~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~   81 (264)
T 2fxq_A            5 LNQVFLIGTLTARPDMRYTPG--G-LAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGR   81 (264)
T ss_dssp             EEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEE
T ss_pred             eeEEEEEEEeccCCeEEECCC--C-CEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEE
Confidence            467899999999888887643  2 256666553      4445      2 8999999999999999999999999974


Q ss_pred             E-EeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecC
Q psy15132        519 T-LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN  597 (786)
Q Consensus       519 ~-V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~  597 (786)
                      - .+.... =.......+|..+   .|..+...........      .....-......|-++|.|..--++.  .+. +
T Consensus        82 L~~~~~~~-dG~~r~~~ev~a~---~i~~l~~~~~~~~~d~------~g~~~m~~~~N~v~l~G~l~~dpe~r--~t~-~  148 (264)
T 2fxq_A           82 LEYRQWEK-DGEKKSEVQVRAE---FIDPLEGRGRETLEDA------RGQPRLRRALNQVILMGNLTRDPDLR--YTP-Q  148 (264)
T ss_dssp             EEEC----------CCEEEEEE---EEEECCCC--------------------CCCCEEEEEEEEESSCCCCE--ECT-T
T ss_pred             EEeeeEEe-CCEEEEEEEEEEE---EEEECcCCcccccccc------ccccccccceEEEEEEEEECCCCEEE--ECC-C
Confidence            2 222211 0011122344433   2333321100000000      00000000123577889887533332  222 3


Q ss_pred             CceeeEEEEEEeec-------cccEEEEEEecccccccc-CCCCCEEEEEe-EEEeec
Q psy15132        598 QKTYMKRDITLVDQ-------SQASVTMTLWGKEAETFD-ASNKPVIAVKA-ARVSEF  646 (786)
Q Consensus       598 g~~~~kr~i~l~D~-------s~~~i~~tLWg~~a~~~~-~~~~~vv~i~~-~~V~~f  646 (786)
                      |+.+..-.|-.-..       .-.-++|++||..|+.+. ...|..|.+.| .+.+.|
T Consensus       149 G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~~l~KG~~V~V~G~l~~~~~  206 (264)
T 2fxq_A          149 GTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASELRKGDGLLVIGRLVNDSW  206 (264)
T ss_dssp             CCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHTTCCTTCEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhhhcCCCCEEEEEEEEEeeEE
Confidence            65544333322211       112699999999988553 56777777775 345556

>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B

Probab=92.51  E-value=0.36  Score=44.15  Aligned_cols=63  Identities=14%  Similarity=0.259  Sum_probs=45.4

Q ss_pred             ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccc----ccCCCCCEEEEEeEEEeecCCc
Q psy15132        575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET----FDASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~----~~~~~~~vv~i~~~~V~~f~G~  649 (786)
                      ..|.++|+|.++.+.           .....+.|.|.||.+|.+..|.+....    -....|.+|.+.| +++.|+|+
T Consensus        32 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G-~l~~f~g~   98 (132)
T 3kdf_D           32 SQVTIVGIIRHAEKA-----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNK   98 (132)
T ss_dssp             CEEEEEEEEEEEEEC-----------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEE-EEEEETTE
T ss_pred             EEEEEEEEEEEEEEc-----------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEE-EEEeECCE
Confidence            468999999987431           245689999999988999999875422    1246788888877 58889986

>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}

Probab=92.26  E-value=2.9  Score=33.70  Aligned_cols=85  Identities=18%  Similarity=0.359  Sum_probs=63.5

Q ss_pred             CCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC--cEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcc
Q psy15132        450 PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG--EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKF  527 (786)
Q Consensus       450 p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G--~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y  527 (786)
                      ....-.++.|.|+..      ..   ..+-..+-+.|.+-  +.++++|.++|-.|.+.+..++||++..|.-...    
T Consensus        10 tskqylsvlaqvvdi------qs---sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiy----   76 (109)
T 3u4z_A           10 TSKQYLSVLAQVVDI------QS---SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIY----   76 (109)
T ss_dssp             CCCSEEEEEEEEEEE------EC---CSSCEEEEEECSSCSSCEEEEECTTHHHHHTTTCCTTCEEEEEEEEEEES----
T ss_pred             HHHHHHHHHHHHhhh------hc---CCCceEEEeecccccceeEEEEchhHHHHHHhhcchhhhhhHHHHHHHHh----
Confidence            344456788888842      11   23567888999884  6999999999999999999999999998854432    


Q ss_pred             cccCCceEEEEccccEEEEccCC
Q psy15132        528 SSINNDYEMSFTHSTTVIPCNED  550 (786)
Q Consensus       528 ~~~~~~yei~f~~~T~I~~~~d~  550 (786)
                         +....+.-+-++.|.+.+|.
T Consensus        77 ---ndevqlknnihssikesddq   96 (109)
T 3u4z_A           77 ---NDEVQLKNNIHSSIKESDDQ   96 (109)
T ss_dssp             ---SSCEEEECCTTCEEEECSSC
T ss_pred             ---hhHHhHhhhhhhhhhccccc
Confidence               24456666678999887664

>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}

Probab=92.19  E-value=1.2  Score=42.12  Aligned_cols=86  Identities=15%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccc---c--ccCCCCcEEEEEeEEEeeeCCc
Q psy15132         58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE---T--FDASNKPVIAVKAARVSEFQGG  132 (786)
Q Consensus        58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~---~--~~~~~~~Vi~i~~~kv~~f~g~  132 (786)
                      ..|+|+|+|.++.+      +     -.+..++|=|.||..|+|.+|=+...   .  .....|.++-++| +|+.|+|.
T Consensus        48 ~~V~IvGiVv~~~~------~-----~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~  115 (159)
T 3kf6_A           48 RWIQIVGYIAAIDI------Y-----EGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSE  115 (159)
T ss_dssp             CEEEEEEEEEEEEE------E-----TTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSS
T ss_pred             EEEEEEEEEEEEEE------e-----CCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCE
Confidence            46999999999752      1     13567888888898899999977621   1  1235688888887 68899999


Q ss_pred             eeeeecceeEEEECCCchHHHHHHhhhh
Q psy15132        133 KTLSLSMSSVLSLNPDIPECHKLQGWFS  160 (786)
Q Consensus       133 ~~ls~~~~s~i~~npd~pe~~~l~~w~~  160 (786)
                      +.|.+.   ++..-.|..  .|++.|-.
T Consensus       116 rqI~~~---~i~~v~d~n--~Ev~~W~~  138 (159)
T 3kf6_A          116 VELIAQ---SFEELRDPN--DEWKAWQK  138 (159)
T ss_dssp             CEEEEE---EEEEECSTH--HHHHHHHH
T ss_pred             EEEEEE---EEEECCCcH--HHHHHHHH
Confidence            988754   443333322  35555543

>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A

Probab=90.60  E-value=0.7  Score=45.32  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             CCceeeecccC-----C--CCCceEEEEEEeecCCcceecCCCCCce-EEEEEEEc---CCCcEEEEEcchhHHHhhhhc
Q psy15132        439 VVQTHPIVSLS-----P--YQNKWTIKARVTNKTPIREWNNARGSGK-LFSIDLLD---ESGEIRATMFNDECNRFHDMI  507 (786)
Q Consensus       439 ~~~~~~I~~L~-----p--~~~~w~I~~RV~~k~~~r~~~~~~~~g~-~~~~~L~D---~~G~I~at~~~~~~~kf~~~l  507 (786)
                      ..++.+|++|-     |  ...+|.+.|-|+.|++.|.-.+    |+ ..-+.|.|   .+.++..-+|++..++++ .+
T Consensus        35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~----gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~-k~  109 (200)
T 3ebe_A           35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNN----GKTFSIWRLNDLKDLDKYISLFLFGDVHKEHW-KT  109 (200)
T ss_dssp             TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-----------CCEEEEEECSSSTTCCEEEEECHHHHHHHT-TC
T ss_pred             CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCC----CCeEEEEEEEecCCCCcEEEEEEechHHHHhc-Cc
Confidence            34566776662     2  1359999999999999887433    33 23344544   445799999999998866 58


Q ss_pred             cCCcEEEEcceEEeccCCcccccCCceEEEEccccEEE
Q psy15132        508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI  545 (786)
Q Consensus       508 ~~G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~  545 (786)
                      ++|.|+-|-|..+.+.+..    .+.+-|.++....|.
T Consensus       110 ~~G~ViaiLNP~i~~~~~~----~~~~sLsv~~~~~Il  143 (200)
T 3ebe_A          110 DQGTVIGLLNANPMKPKEG----TDEVCLSVDNPQKVL  143 (200)
T ss_dssp             CTTEEEEEESCEECCCCTT----CCCEEEECSSGGGEE
T ss_pred             CCceEEEEECCEEccCCCC----CcceEEEECCcccEE
Confidence            9999999999987544322    234555554433333

>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A

Probab=90.06  E-value=1.1  Score=46.26  Aligned_cols=69  Identities=14%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccc---cc-cCCCCcEEEEEeEEEeeeCCce
Q psy15132         58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE---TF-DASNKPVIAVKAARVSEFQGGK  133 (786)
Q Consensus        58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~---~~-~~~~~~Vi~i~~~kv~~f~g~~  133 (786)
                      ..|.++|+|+++..         +.  ....++|.|.||.+|.+.+|.+...   .. ....+.+|-+.| +|..|+|.+
T Consensus        72 ~~V~ivG~V~~i~~---------~~--~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~  139 (270)
T 2pi2_A           72 SQVTIVGIIRHAEK---------AP--TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNKK  139 (270)
T ss_dssp             SEEEEEEEEEEEEE---------CS--SEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTEE
T ss_pred             EEEEEEEEEEEEEe---------cc--ceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE-EEEecCCee
Confidence            36889999888732         11  3568999999987899999987543   11 235677887776 888999988


Q ss_pred             eeeec
Q psy15132        134 TLSLS  138 (786)
Q Consensus       134 ~ls~~  138 (786)
                      .|.+.
T Consensus       140 qi~i~  144 (270)
T 2pi2_A          140 SLVAF  144 (270)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88754

>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A

Probab=89.54  E-value=0.81  Score=47.21  Aligned_cols=63  Identities=13%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc----cccCCCCCEEEEEeEEEeecCCc
Q psy15132        575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE----TFDASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~----~~~~~~~~vv~i~~~~V~~f~G~  649 (786)
                      ..|+++|+|+++..         +  .....++|.|.||.+|.+.+|.+...    .-....+.+|.+.| +|+.|+|+
T Consensus        72 ~~V~ivG~V~~i~~---------~--~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~  138 (270)
T 2pi2_A           72 SQVTIVGIIRHAEK---------A--PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNK  138 (270)
T ss_dssp             SEEEEEEEEEEEEE---------C--SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTE
T ss_pred             EEEEEEEEEEEEEe---------c--cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE-EEEecCCe
Confidence            35889999988632         1  24678999999997799999987532    12256788988876 88899997

>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A

Probab=88.98  E-value=0.52  Score=43.93  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             eeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccCCCh
Q psy15132        257 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH  297 (786)
Q Consensus       257 y~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~  297 (786)
                      |.|.+.|+|+|+.+.+.+=+++-+.++|.|+.|+.+++.++
T Consensus        60 W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~lkkdp  100 (157)
T 3mxn_A           60 WSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQSKKDP  100 (157)
T ss_dssp             CBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHHHTTSH
T ss_pred             EEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHHHhhCH
Confidence            77899999999999999999999999999999999987654

>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A

Probab=88.25  E-value=2.8  Score=48.57  Aligned_cols=128  Identities=16%  Similarity=0.145  Sum_probs=88.6

Q ss_pred             ccCCCcCCCCCeEEEEccCcEEEEccCCC----CCCCCceeEeecCccchhc---cCCCCceEEEEEEEEeccceeEeec
Q psy15132          6 ANKKFSSINNDYEMSFTHSTTVIPCNEDE----VGNMPSVKYCFVPLKTIAE---ISPDENIDVLGVCIDAAELSSVTGK   78 (786)
Q Consensus         6 A~~~y~~~~~~yei~f~~~T~I~~~~d~~----~~~iP~~~~~f~~~~~i~~---~~~~~~vDViGvV~~v~~~~~i~~k   78 (786)
                      ++.+.+.-...-+|+-...|.+.+.+..+    ..--|+.   .++|++|.+   .....-+|++|+|..|+...     
T Consensus       556 s~s~~~~~~~~lqLtAtk~T~~~~L~~~~~~~~~~~~pR~---~~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~-----  627 (738)
T 1miu_A          556 SKSKSKFERPSIQLTATKRTQYQQLPVSSETLLQVYQPRE---SLHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI-----  627 (738)
T ss_dssp             CCCCCSSSCCSCEEEEEEEEEEEEECCCHHHHTTTCCCCC---BCCSGGGGSSSCCTTTTEEEEEEEEEEEECCT-----
T ss_pred             cCCCccCccceEEEeecccceeEECCcchhhhccccCCcc---eeeHHHhcCccccCCCCceeEEEEEEEEcccC-----
Confidence            33333333355789999999999986321    0112332   345667764   45678999999999996531     


Q ss_pred             cCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeC--CceeeeecceeEEEECCC
Q psy15132         79 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ--GGKTLSLSMSSVLSLNPD  148 (786)
Q Consensus        79 ~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~--g~~~ls~~~~s~i~~npd  148 (786)
                        |   ..--+.|.|.+..-+.+.+|+..+++  ...+.+||+.+.......  |-..|-.+..|.+.-||-
T Consensus       628 --~---~~~~vylsD~~~nll~Ikf~~~l~eD--~~~~~~va~sNL~~r~~~~~~ip~~~a~~~t~fs~~pk  692 (738)
T 1miu_A          628 --G---LAPLVYLSDECLNLLVVKFGIDLNED--IKPRVLIAASNLQCQPESTSGVPTLFAGHFSIFSASPK  692 (738)
T ss_dssp             --T---SCCEEEEECSSSCEEEEEESSCCCSC--CCSSCEEEEEEEECCSCCSSSCCCEEECTTCEEESSCC
T ss_pred             --c---ccceEEEEcCCCcEEEEEEecCchhh--CccccEEEEeeeEeeccccccCceEEeccceEEecCcc
Confidence              2   12357899999889999999999977  788899999998664332  335566777888888884

>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A

Probab=88.01  E-value=0.47  Score=44.24  Aligned_cols=64  Identities=19%  Similarity=0.356  Sum_probs=51.4

Q ss_pred             CCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhHH
Q psy15132        666 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE  745 (786)
Q Consensus       666 ~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae  745 (786)
                      .+..|.|+|.|+.+...               +.. .+|.|                .|.+.|+|+|+.+.+-+-+++-+
T Consensus        36 ~~~~~kVKafI~tl~~~---------------l~~-~~~~W----------------~l~a~IsDGS~~LdV~f~~~VLt   83 (157)
T 3mxn_A           36 EVTTVKVKAFIVTLTGN---------------LSS-SGGIW----------------SITAKVSDGTAYLDVDFVDEILT   83 (157)
T ss_dssp             SCEEEEEEEEEEEECSC---------------CBC-GGGSC----------------BCEEEEECSSCEEEEEECHHHHH
T ss_pred             CceEEEEEEEEEEeccc---------------eee-cCCEE----------------EEEEEEeCCceeEEEEeeHHHHH
Confidence            45679999999998542               221 12333                57899999999999999999999


Q ss_pred             HHhCCChHHHhccccC
Q psy15132        746 SILGVTAQEVGESTED  761 (786)
Q Consensus       746 ~llG~sa~el~~~~~~  761 (786)
                      .++|.|+.|+.+++.+
T Consensus        84 ~lIGfS~~E~~~lkkd   99 (157)
T 3mxn_A           84 SLIGFSVPEMKQSKKD   99 (157)
T ss_dssp             HHHSCCHHHHHHHTTS
T ss_pred             hhhCCCHHHHHHHhhC
Confidence            9999999999988754

>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*

Probab=87.98  E-value=19  Score=34.48  Aligned_cols=164  Identities=13%  Similarity=0.108  Sum_probs=114.0

Q ss_pred             EEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceE
Q psy15132        456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE  535 (786)
Q Consensus       456 ~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~ye  535 (786)
                      ...|-|+.-.+.=.|..+.|..++|+-+++-++.-.++-+|+-..   .+.+..++++.||++.-           +.--
T Consensus        14 P~~VmVLkaTepF~Ye~~E~~~~MFHATVATetqfF~VKVfn~~L---KeKF~pk~iI~ISdY~~-----------~~gf   79 (208)
T 3rn5_A           14 CLPVMVLKAKKPFTFETQEGKQEMFHATVATEKEFFFVKVFNTLL---KDKFIPKRIIIIARYYR-----------HSGF   79 (208)
T ss_dssp             CEEEEEEEECCCEEEEETTEEEEEEEEEEECSSCEEEEEECCGGG---GGTCCTTCEEEEESBEE-----------CSSC
T ss_pred             CeEEEEEeccCCeeeecccccceEEEEEEeeccceEEEEEecchh---hhhcCCCcEEEEEeccc-----------ccce
Confidence            456777777777788776655689999999999999999999754   67889999999999753           3346


Q ss_pred             EEEccccEEEEccCCCCCCCCccee----eccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeec
Q psy15132        536 MSFTHSTTVIPCNEDEVGNMPSVKY----CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ  611 (786)
Q Consensus       536 i~f~~~T~I~~~~d~~~~~iP~~~~----~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~  611 (786)
                      |..++.|.|.++..+..-.+|.--.    .--+|++|.....+.+|+=+=.|...      +.+   +  ...-..|.|+
T Consensus        80 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK------~v~---~--~~~~YeI~Dn  148 (208)
T 3rn5_A           80 LEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKV------TEK---K--KNILFDLSDN  148 (208)
T ss_dssp             EEECTTSEEEECCTTCCCCCCHHHHHHHHSCCCHHHHHTSCSSCEEEEEEEEEEE------EEC---S--SEEEEEEEET
T ss_pred             EEEecccEEEEccCCceeecCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEE------Eec---c--ceEEEEEecC
Confidence            7788889999986444225675421    12348888887778887643333321      111   1  2345788999


Q ss_pred             cccEEEEEEeccccccccCCCCCEEEEEeEEEeec
Q psy15132        612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF  646 (786)
Q Consensus       612 s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f  646 (786)
                      || .++|...|.... ....+|+-+.+.-..++..
T Consensus       149 TG-~MeVvv~G~~~~-i~CEeGDKLrL~cFeL~~~  181 (208)
T 3rn5_A          149 TG-KMEVLGVRNEDT-MKCKEGDKVRLTFFTLSKN  181 (208)
T ss_dssp             TE-EEEEEEECSTGG-GSCCTTCEEEEEEEEEEEC
T ss_pred             CC-cEEEEEeccCcc-cccCCCCeeEEEEEEEecc
Confidence            99 799999998663 4567777665554455443

>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}

Probab=86.71  E-value=3  Score=40.77  Aligned_cols=63  Identities=5%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC-------CC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-------SG-------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~-------~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      .++.+|.+||++.-++|...+  + ..+.+|.|+=.       +|       + |++++|+.+++.+...|+.|+.++|.
T Consensus         4 ~N~V~LiGrL~~DPElR~T~~--G-~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve   80 (199)
T 3eiv_A            4 ETVITVVGNLVDDPELRFTPS--G-AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ   80 (199)
T ss_dssp             CCEEEEEEEESSCCEEEECTT--C-CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred             ccEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence            467899999999888887643  2 25667766421       12       2 99999999999999999999999998


Q ss_pred             c
Q psy15132        517 N  517 (786)
Q Consensus       517 ~  517 (786)
                      .
T Consensus        81 G   81 (199)
T 3eiv_A           81 G   81 (199)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}

Probab=86.51  E-value=2.3  Score=40.06  Aligned_cols=63  Identities=16%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc-----cccCCCCCEEEEEeEEEeecCCc
Q psy15132        575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE-----TFDASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~-----~~~~~~~~vv~i~~~~V~~f~G~  649 (786)
                      ..|+++|+|+++.+      +     -.+..+.|-|.||..|+|.+|-+...     ......|.+|.++| +|+.|+|.
T Consensus        48 ~~V~IvGiVv~~~~------~-----~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~  115 (159)
T 3kf6_A           48 RWIQIVGYIAAIDI------Y-----EGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSE  115 (159)
T ss_dssp             CEEEEEEEEEEEEE------E-----TTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSS
T ss_pred             EEEEEEEEEEEEEE------e-----CCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCE
Confidence            46999999998752      1     13467888888898899999987621     12246788998887 68889885

>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}

Probab=86.49  E-value=3.4  Score=36.57  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEc------CCC----c-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD------ESG----E-IRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D------~~G----~-I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      .+++..|.|||.....+|...+  | ..+.+|.|+=      +.|    + |++++|+.+++.....|+.|+.+.+.+.
T Consensus         4 mmN~v~l~G~l~~dpe~r~t~~--G-~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~   79 (116)
T 3vdy_A            4 MFNQVMLVGRLTKDPDLRYTSA--G-AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGR   79 (116)
T ss_dssp             CCCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred             eEeEEEEEEEEccCcEEEECCC--C-CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEE
Confidence            4678999999998888886543  2 2566666532      234    2 9999999999999999999999999974

>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A

Probab=85.82  E-value=1.6  Score=37.98  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCCc-------EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESGE-------IRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G~-------I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      +++..+.||++.-.++|...+  | ..+.+|.|+=     +.+-       |++++|+..++.....|+.|+-+++.+.
T Consensus         2 ~N~v~L~G~l~~dpelR~t~~--G-~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~   77 (104)
T 1txy_A            2 TNRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGF   77 (104)
T ss_dssp             CEEEEEEEEEEEEEEEEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEE
T ss_pred             cEEEEEEEEECCCceEEECCC--C-CEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEE
Confidence            467899999999988887643  2 2666776643     3355       9999999999999999999999999975

>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}

Probab=85.46  E-value=5.1  Score=35.09  Aligned_cols=65  Identities=8%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC------Cc-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132        451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES------GE-IRATMFNDECNRFHDMIEKDKVYYISN  517 (786)
Q Consensus       451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~------G~-I~at~~~~~~~kf~~~l~~G~vy~is~  517 (786)
                      .++...+.||+++--++|...+  |...+.+|.|+=..      -+ |++++|+.+++.....|+.|+-+.|.+
T Consensus        10 ~~~~v~LiGrL~~DPelR~t~~--g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeG   81 (108)
T 3koj_A           10 HMNSCILQATVVEAPQLRYAQD--NQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEG   81 (108)
T ss_dssp             SCEEEEEEEEEEEEEEEEECTT--SSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred             ccceEEEEEEECCCCEEEEeCC--CCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEE
Confidence            4567899999999988887643  22367777765331      13 999999999999999999999999987

>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}

Probab=85.06  E-value=4  Score=37.22  Aligned_cols=64  Identities=20%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC-------cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG-------EIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G-------~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      +++..|.+||..--.+|...+  | ..+.+|.|+      |+.|       -|.+++|+.+++.....|+.|+.+.|.+.
T Consensus         2 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~   78 (134)
T 2vw9_A            2 FNKVIMVGRLTRNVELKYLPS--G-SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGR   78 (134)
T ss_dssp             CCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred             eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEE
Confidence            467899999998888887643  2 256666553      4434       29999999999999999999999999974

>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A

Probab=84.78  E-value=5.7  Score=35.16  Aligned_cols=65  Identities=18%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCCc-------EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESGE-------IRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G~-------I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      +++..+.||+++-.++|.-.  .| ..+.+|.|+-     +.|.       |.+++|+..++.. ..|..|+-+.|+++-
T Consensus         1 MNkviL~GrL~~dPelRyTp--sG-~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL   76 (115)
T 3fhw_A            1 MNTLELSARVLECGAMRHTP--AG-LPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFL   76 (115)
T ss_dssp             CEEEEEEEEEEEECCCEECT--TS-CEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEE
T ss_pred             CCEEEEEEEECcCcceEECC--CC-CEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEE
Confidence            46788999999999999543  23 2667777653     2342       9999999999887 889999999999864


Q ss_pred             E
Q psy15132        520 L  520 (786)
Q Consensus       520 V  520 (786)
                      -
T Consensus        77 ~   77 (115)
T 3fhw_A           77 A   77 (115)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}

Probab=84.24  E-value=4  Score=38.13  Aligned_cols=66  Identities=14%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             CCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEE-c------CCC-----c-EEEEEcchhHHHhhhhccCCcEEEE
Q psy15132        449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL-D------ESG-----E-IRATMFNDECNRFHDMIEKDKVYYI  515 (786)
Q Consensus       449 ~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~-D------~~G-----~-I~at~~~~~~~kf~~~l~~G~vy~i  515 (786)
                      -|..++..|.|||.+--.+|...+  | ..+.+|.|+ +      ++|     + |++++|+.+++.....|+.|+-+.|
T Consensus        13 ~~~~N~V~LiGrL~~DPelr~t~~--G-~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V   89 (153)
T 1z9f_A           13 MSFFNKIILIGRLVRDPEERYTLS--G-TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLV   89 (153)
T ss_dssp             CSCCCCEEEEEEESSCCEEEECC-----CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEE
T ss_pred             ccceeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEE
Confidence            456788999999998888887643  2 366677664 2      223     2 9999999999999999999999999


Q ss_pred             cc
Q psy15132        516 SN  517 (786)
Q Consensus       516 s~  517 (786)
                      .+
T Consensus        90 eG   91 (153)
T 1z9f_A           90 EG   91 (153)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}

Probab=84.07  E-value=3.3  Score=38.96  Aligned_cols=65  Identities=23%  Similarity=0.329  Sum_probs=50.6

Q ss_pred             CCCceEEEEEEeecCCcceecCCCCCceEEEEEE------EcC-CC------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL------LDE-SG------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L------~D~-~G------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      .+++..|.+||...-.+|...+  | ..+.+|.|      .|+ +|      + |++++|+.+++.+...|+.|+.++|.
T Consensus         7 ~mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve   83 (158)
T 3tqy_A            7 GVNKVILIGNLGQDPEVRYTPN--G-NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE   83 (158)
T ss_dssp             CEEEEEEEEEESSSCEEEECTT--C-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred             ccCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence            4578999999999888887643  2 25555554      344 45      2 89999999999999999999999998


Q ss_pred             ce
Q psy15132        517 NC  518 (786)
Q Consensus       517 ~~  518 (786)
                      +.
T Consensus        84 G~   85 (158)
T 3tqy_A           84 GS   85 (158)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}

Probab=83.03  E-value=9.9  Score=33.98  Aligned_cols=84  Identities=18%  Similarity=0.352  Sum_probs=60.9

Q ss_pred             CCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC--cEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCc
Q psy15132        449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG--EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK  526 (786)
Q Consensus       449 ~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G--~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~  526 (786)
                      .....-..+.|.|+..   .   .   ..+-+.+-+.|.+-  +.++++|.++|-.|.+.+..++||++..|.-...+  
T Consensus       127 ktskqylsvlaqvvdi---q---s---sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn--  195 (213)
T 3u58_A          127 KTSKQYLSVLAQVVDI---Q---S---SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN--  195 (213)
T ss_dssp             TCCCSEEEEEEEEEEE---E---E---CSSCEEEEEECTTCSCCEEEEECTTTTGGGTTCCCTTCEEEEEEEEECCSS--
T ss_pred             HHhHHHHHHHHHhhcc---c---c---CCCceEEEeecccccceeEEEEchhHhhHhhhhcchhhhhhHHHHHHHHhh--
Confidence            3444556888988842   1   1   13557888999884  79999999999999999999999999988543322  


Q ss_pred             ccccCCceEEEEccccEEEEcc
Q psy15132        527 FSSINNDYEMSFTHSTTVIPCN  548 (786)
Q Consensus       527 y~~~~~~yei~f~~~T~I~~~~  548 (786)
                           ....+.-+-++.|.+.+
T Consensus       196 -----devqlknnihssikesd  212 (213)
T 3u58_A          196 -----DEVQLKNNIHSSIKESD  212 (213)
T ss_dssp             -----SSCEEECCTTCEEEECC
T ss_pred             -----hhhhhhhhhhhhhcccC
Confidence                 34455555677777653

>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}

Probab=82.98  E-value=6.7  Score=44.38  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             CceeeecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcch-----hHHHhhhhccCCcE
Q psy15132        440 VQTHPIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND-----ECNRFHDMIEKDKV  512 (786)
Q Consensus       440 ~~~~~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~-----~~~kf~~~l~~G~v  512 (786)
                      ...+.|.+|.+.  ...++|+|||.++   |.      .|++.=++|.|.+|.|++++-.+     ..-++...|..|++
T Consensus        48 ~~~~~i~~l~~~~~g~~V~v~Gwv~~~---R~------~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~  118 (548)
T 3i7f_A           48 LKYTEIEELVPAMAEKTVTIRARVQAV---RG------KGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESI  118 (548)
T ss_dssp             CCBCCGGGCSGGGTTCEEEEEEEEEEE---EE------CSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEE
T ss_pred             CceEEhhhcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCE
Confidence            456788888743  3568999999853   33      36788889999999999998641     23345667999999


Q ss_pred             EEEcceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132        513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       513 y~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~  547 (786)
                      +.+.+.-++...+.-+.....+||....-..+..+
T Consensus       119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a  153 (548)
T 3i7f_A          119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA  153 (548)
T ss_dssp             EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred             EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence            99997655443222223357899999876666655

>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*

Probab=82.11  E-value=7.4  Score=36.89  Aligned_cols=63  Identities=14%  Similarity=0.317  Sum_probs=49.2

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG-------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      .++..|.+||++--.+|...+  | ..+.+|.|+      |. +|       + |++++|+.+++.....|+.|+.++|.
T Consensus         4 ~N~V~LiG~L~~dPelr~t~~--G-~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve   80 (168)
T 3afp_A            4 DTTITIVGNLTADPELRFTSS--G-AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVT   80 (168)
T ss_dssp             CCEEEEEEEESSSCCCEECTT--S-CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence            577899999999888887643  2 366677665      21 12       2 99999999999999999999999999


Q ss_pred             c
Q psy15132        517 N  517 (786)
Q Consensus       517 ~  517 (786)
                      +
T Consensus        81 G   81 (168)
T 3afp_A           81 G   81 (168)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}

Probab=81.31  E-value=8.1  Score=33.44  Aligned_cols=62  Identities=19%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             CceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCC------c-EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132        453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESG------E-IRATMFNDECNRFHDMIEKDKVYYISNCT  519 (786)
Q Consensus       453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~~~  519 (786)
                      ++..+.||+++-.++|...+  | ..+.+|.|+=     +.|      . |++++|+.+++ ... |+.|+-++|.+.-
T Consensus         8 Nkv~LiG~L~~dPelRytp~--G-~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL   81 (103)
T 3k8a_A            8 NLVSLAALIEKAFPIRYTPA--G-IPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFL   81 (103)
T ss_dssp             EEEEEEEEEEEECCCEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEE
T ss_pred             cEEEEEEEECCCCceEECCC--C-CEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEE
Confidence            78999999999999997643  2 3677776652     344      2 89999999999 555 9999999999863

>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*

Probab=80.63  E-value=6.9  Score=43.76  Aligned_cols=98  Identities=15%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             ceeeecccCCC---CCceEEEEEEeecCCcceecCCCCCceE-EEEEEEcCCCcEEEEEcch-------hHHHhhhhccC
Q psy15132        441 QTHPIVSLSPY---QNKWTIKARVTNKTPIREWNNARGSGKL-FSIDLLDESGEIRATMFND-------ECNRFHDMIEK  509 (786)
Q Consensus       441 ~~~~I~~L~p~---~~~w~I~~RV~~k~~~r~~~~~~~~g~~-~~~~L~D~~G~I~at~~~~-------~~~kf~~~l~~  509 (786)
                      +.+.|.+|...   ....+|.|||.++   |.      .|++ .=++|.|.+|.|++++-.+       ..-++...|..
T Consensus        22 ~~~~~~~l~~~~~~g~~V~v~GwV~~~---R~------~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~   92 (487)
T 1eov_A           22 KRVKFVDLDEAKDSDKEVLFRARVHNT---RQ------QGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNL   92 (487)
T ss_dssp             CCCCGGGCCTTTTTTCEEEEEEEEEEE---EE------CSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCT
T ss_pred             ceeEHHHhcccccCCCEEEEEEEEEEe---ec------cCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCC
Confidence            34567777643   3468999999953   43      2565 6678999999999998532       22234467999


Q ss_pred             CcEEEEcceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132        510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       510 G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~  547 (786)
                      |+++.+.+.-++...+.-+.....+||...+-..+..+
T Consensus        93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a  130 (487)
T 1eov_A           93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET  130 (487)
T ss_dssp             TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence            99999998655443221112236789988876666555

>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}

Probab=80.34  E-value=7.5  Score=34.76  Aligned_cols=64  Identities=20%  Similarity=0.376  Sum_probs=49.4

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC------c-EEEEEcc-hhHHHhhhhccCCcEEEEc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG------E-IRATMFN-DECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G------~-I~at~~~-~~~~kf~~~l~~G~vy~is  516 (786)
                      .++..|.||+..--.+|...+  | ..+.+|.|+      |. +|      + +++++|+ .+++.+...|+.|+.+.+.
T Consensus         6 ~N~v~l~Grl~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~   82 (124)
T 3ulp_A            6 LNKIMLIGRVGCEPDIKILNG--G-DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQ   82 (124)
T ss_dssp             EEEEEEEEEECSCCEEEECTT--S-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred             ceEEEEEEEECCCcEEEECCC--C-CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEE
Confidence            467899999998888887643  2 256666553      32 24      2 9999999 7999999999999999998


Q ss_pred             ce
Q psy15132        517 NC  518 (786)
Q Consensus       517 ~~  518 (786)
                      +-
T Consensus        83 G~   84 (124)
T 3ulp_A           83 GS   84 (124)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	786
d1l1oc_	178	b.40.4.3 (C:) Replication protein A 70 KDa subunit	1e-43
d1l1oc_	178	b.40.4.3 (C:) Replication protein A 70 KDa subunit	1e-42
d1jmca1	116	b.40.4.3 (A:183-298) Replication protein A 70 KDa	3e-43
d1jmca1	116	b.40.4.3 (A:183-298) Replication protein A 70 KDa	1e-05
d1jmca2	122	b.40.4.3 (A:299-420) Replication protein A 70 KDa	5e-36
d1jmca2	122	b.40.4.3 (A:299-420) Replication protein A 70 KDa	4e-25
d1o7ia_	115	b.40.4.3 (A:) Archaeal ssDNA-binding protein {Arch	5e-22
d1o7ia_	115	b.40.4.3 (A:) Archaeal ssDNA-binding protein {Arch	3e-04
d2b3ga1	112	b.40.4.3 (A:3-114) Replication protein A 70 KDa su	7e-19

>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (389), Expect = 1e-43
 Identities = 68/148 (45%), Positives = 89/148 (60%), Gaps = 5/148 (3%)

Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
            N   + E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 2   TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 61

Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP---- 298
           CEKC+ EF  F YR+IL V I D+  + WVT FQ  AE+ILG  A  +GE  + +     
Sbjct: 62  CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 121

Query: 299 -ALKKALFTQYIFRLRAKLEHYNGTKKI 325
              + A F  +IFR+R K+E YN   +I
Sbjct: 122 EVFQNANFRSFIFRVRVKVETYNDESRI 149

>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (381), Expect = 1e-42
 Identities = 67/143 (46%), Positives = 87/143 (60%), Gaps = 5/143 (3%)

Query: 648 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 707
            N   + E++ + LG GDK DY S    +   R  N  Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 2   TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 61

Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP---- 763
           CEKC+ EF  F YR+IL V I D+  + WVT FQ  AE+ILG  A  +GE  + +     
Sbjct: 62  CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 121

Query: 764 -ALKKALFTQYIFRLRAKLEHYN 785
              + A F  +IFR+R K+E YN
Sbjct: 122 EVFQNANFRSFIFRVRVKVETYN 144

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (379), Expect = 3e-43
 Identities = 68/118 (57%), Positives = 95/118 (80%), Gaps = 2/118 (1%)

Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
           +  PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ 
Sbjct: 1   KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQV 60

Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
           ++F  +IE +KVYY S  TLK ANK+F+++ NDYEM+F + T+V+PC +D   ++P+V
Sbjct: 61  DKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTV 116

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 17/37 (45%), Positives = 29/37 (78%), Gaps = 2/37 (5%)

Query: 5   PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 41
            ANK+F+++ NDYEM+F + T+V+PC +D   ++P+V
Sbjct: 82  IANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTV 116

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (327), Expect = 5e-36
 Identities = 49/121 (40%), Positives = 79/121 (65%), Gaps = 1/121 (0%)

Query: 42  KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 101
           ++ F  +  +   S D  +D++G+C    + + +T ++N +   KR+I L+D S   VT 
Sbjct: 1   QFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTA 60

Query: 102 TLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST 161
           TLWG++A+ FD S +PV+A+K ARVS+F  G++LS+  SS +  NPDIPE +KL+GWF  
Sbjct: 61  TLWGEDADKFDGSRQPVLAIKGARVSDFG-GRSLSVLSSSTIIANPDIPEAYKLRGWFDA 119

Query: 162 Q 162
           +
Sbjct: 120 E 120

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 4e-25
 Identities = 33/89 (37%), Positives = 56/89 (62%)

Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
           ++ F  +  +   S D  +D++G+C    + + +T ++N +   KR+I L+D S   VT 
Sbjct: 1   QFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTA 60

Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQ 647
           TLWG++A+ FD S +PV+A+K ARVS+F 
Sbjct: 61  TLWGEDADKFDGSRQPVLAIKGARVSDFG 89

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 115

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Archaeal ssDNA-binding protein
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 89.6 bits (222), Expect = 5e-22
 Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
           + +L P      +  RV   +  R+     G   +    + DE+G ++ T++        
Sbjct: 5   VGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA---- 60

Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
             I++ +V  I N          ++     +++    T +   +ED  
Sbjct: 61  GSIKEGQVVKIENA-------WTTAFKGQVQLNAGSKTKIAEASEDGF 101

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 115

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Archaeal ssDNA-binding protein
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 49  KTIAEISP-DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 107
           + +  + P  E+++V    ++A+E   +  K   +T    +  + D++   V +TLWGK 
Sbjct: 3   EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTI--SEAIVGDET-GRVKLTLWGKH 59

Query: 108 AETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPD 148
           A +       V+ ++ A  + F+G   L+    + ++   +
Sbjct: 60  AGSIKEGQ--VVKIENAWTTAFKGQVQLNAGSKTKIAEASE 98

>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (199), Expect = 7e-19
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
           + DG+N  S  MLATQLN ++ +  LS   + QI R+IV+ +  G    R V+I++EL +
Sbjct: 44  MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 99

Query: 385 IKPGTEIGFKIGN 397
           +K    +G KIGN
Sbjct: 100 LKSAEAVGVKIGN 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	786
d1l1oc_	178	Replication protein A 70 KDa subunit (RPA70) {Huma	100.0
d1l1oc_	178	Replication protein A 70 KDa subunit (RPA70) {Huma	100.0
d1jmca2	122	Replication protein A 70 KDa subunit (RPA70) {Huma	99.96
d1jmca1	116	Replication protein A 70 KDa subunit (RPA70) {Huma	99.95
d1jmca2	122	Replication protein A 70 KDa subunit (RPA70) {Huma	99.8
d2b3ga1	112	Replication protein A 70 KDa subunit (RPA70) {Huma	99.58
d1o7ia_	115	Archaeal ssDNA-binding protein {Archaeon Sulfolobu	99.55
d1o7ia_	115	Archaeal ssDNA-binding protein {Archaeon Sulfolobu	98.99
d1wjja_	145	Hypothetical protein At4g28440 (F20O9.120) {Thale	98.96
d1wjja_	145	Hypothetical protein At4g28440 (F20O9.120) {Thale	98.59
d1xjva1	140	Protection of telomeres protein 1, Pot1 {Human (Ho	98.36
d1jmca1	116	Replication protein A 70 KDa subunit (RPA70) {Huma	98.12
d1xjva1	140	Protection of telomeres protein 1, Pot1 {Human (Ho	98.12
d1jb7a1	169	Telomere end binding protein alpha subunit {Oxytri	97.82
d1jb7a1	169	Telomere end binding protein alpha subunit {Oxytri	97.43
d1qzga_	170	Protection of telomeres protein 1, Pot1 {Fission y	97.39
d1qzga_	170	Protection of telomeres protein 1, Pot1 {Fission y	97.38
d1se8a_	231	ssDNA-binding protein {Deinococcus radiodurans [Ta	96.47
d1xjva2	151	Protection of telomeres protein 1, Pot1 {Human (Ho	91.0
d1gm5a2	180	RecG "wedge" domain {Thermotoga maritima [TaxId: 2	90.66
d1eova1	134	Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S	89.37
d1c0aa1	106	Aspartyl-tRNA synthetase (AspRS) {Escherichia coli	88.85
d1e1oa1	143	Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g	88.33
d2pi2a1	128	Replication protein A 32 KDa subunit (RPA32) fragm	87.83
d1v1qa_	111	Primosomal replication protein N, PriB {Escherichi	87.06
d1qvca_	145	ssDNA-binding protein {Escherichia coli [TaxId: 56	86.57
d1n9wa1	93	Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph	86.45
d1ue1a_	118	ssDNA-binding protein {Mycobacterium tuberculosis	86.11
d2pi2a1	128	Replication protein A 32 KDa subunit (RPA32) fragm	85.69
d1b8aa1	103	Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ	85.56
d1l0wa1	104	Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph	82.22
d1jb7a2	124	Telomere end binding protein alpha subunit {Oxytri	81.37
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	80.28

>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=294.89  Aligned_cols=162  Identities=43%  Similarity=0.754  Sum_probs=143.3

Q ss_pred             chhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeEE
Q psy15132        183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM  262 (786)
Q Consensus       183 ~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~  262 (786)
                      .+++||+||++++||.+++|+||+|+|+|..|+.++|||+|||++.|+|||.++++|.|+|++|++..++|.|||+|++.
T Consensus         2 ~~~kti~~i~~e~lg~~~k~d~f~v~a~I~~i~~~~~~Y~aCp~~~C~KKv~~~~~g~~~C~kC~~~~~~~~~ry~l~~~   81 (178)
T d1l1oc_           2 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN   81 (178)
T ss_dssp             CCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEE
T ss_pred             CccccHHHHHhccCCCCCCCCEEEEEEEEEEEeCCCeEEcCCCCcccCCccccCCCCcEECCCCCCcCCCceEEEEEEEE
Confidence            46899999999999999999999999999999999999999997779999988788999999999999999999999999


Q ss_pred             EEecCCcEEEEeehHHHHHHhCCChhhhhccCCChH-----HHHHhcCCEEEEEEeeecccccCccccCCCcceeeEEEe
Q psy15132        263 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAML  337 (786)
Q Consensus       263 v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~~-----~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~l  337 (786)
                      |+|+||++|+++||+.|++|||+||+||.++.+.++     .++++.|++|.|++|+++++||++.++   ++   .++-
T Consensus        82 i~D~Tg~~~~~~F~~~a~~l~G~sA~EL~~~~~~d~~~~~~~~~~l~~k~~~f~~~~k~~~yn~e~r~---k~---~v~~  155 (178)
T d1l1oc_          82 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRI---KA---TVMD  155 (178)
T ss_dssp             EECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----C---EE---EEEE
T ss_pred             EecCCCCEEEEEehhhHHHHhCCCHHHHHHHhhcCHHHHHHHHHHhcCcEEEEEEEEEecccCCeeEE---EE---EEEE
Confidence            999999999999999999999999999999875532     578999999999999999999998876   44   6788


Q ss_pred             ecccccccccCCc
Q psy15132        338 ATQLNDIITDGTL  350 (786)
Q Consensus       338 a~~ln~~v~~~~L  350 (786)
                      ..++|+..++..|
T Consensus       156 i~pvd~~~e~~~L  168 (178)
T d1l1oc_         156 VKPVDYREYGRRL  168 (178)
T ss_dssp             EEECCHHHHHHHH
T ss_pred             eEeCCHHHHHHHH
Confidence            8889987766444

>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-35  Score=283.38  Aligned_cols=136  Identities=49%  Similarity=0.894  Sum_probs=129.0

Q ss_pred             ccHHhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEe
Q psy15132        651 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD  730 (786)
Q Consensus       651 ~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D  730 (786)
                      +||+|++++++|.+++|+||+|+|+|..|+.++|||+|||+++|+|||++.++|.|+|++|++.+++|.|||+|++.|+|
T Consensus         5 kti~~i~~e~lg~~~k~d~f~v~a~I~~i~~~~~~Y~aCp~~~C~KKv~~~~~g~~~C~kC~~~~~~~~~ry~l~~~i~D   84 (178)
T d1l1oc_           5 KTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIAD   84 (178)
T ss_dssp             CCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEEEEC
T ss_pred             ccHHHHHhccCCCCCCCCEEEEEEEEEEEeCCCeEEcCCCCcccCCccccCCCCcEECCCCCCcCCCceEEEEEEEEEec
Confidence            68999999999999999999999999999999999999998789999988888999999999999999999999999999


Q ss_pred             cCCcEEEEEehhhHHHHhCCChHHHhccccChH-----HHHHhcCCeEEEEEEEEeeccCC
Q psy15132        731 WTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK  786 (786)
Q Consensus       731 ~Tg~~~~~~F~~~ae~llG~sa~el~~~~~~~~-----~~~~~~~k~~~f~v~~k~~~y~~  786 (786)
                      +||++|+++||+.|++|||+||+||.++.++++     +++++.|++|+|++|+|+|+|||
T Consensus        85 ~Tg~~~~~~F~~~a~~l~G~sA~EL~~~~~~d~~~~~~~~~~l~~k~~~f~~~~k~~~yn~  145 (178)
T d1l1oc_          85 FQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYND  145 (178)
T ss_dssp             SSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC--
T ss_pred             CCCCEEEEEehhhHHHHhCCCHHHHHHHhhcCHHHHHHHHHHhcCcEEEEEEEEEecccCC
Confidence            999999999999999999999999999987664     88999999999999999999996

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-29  Score=230.28  Aligned_cols=121  Identities=40%  Similarity=0.758  Sum_probs=115.8

Q ss_pred             eEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEE
Q psy15132         42 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV  121 (786)
Q Consensus        42 ~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i  121 (786)
                      .|+|++|+||.+++++.+|||||+|++++++++|++|++|++..||+|+|+|+|+.+|+|||||++|..|+.+.++||+|
T Consensus         1 ~y~F~~i~di~~~~~~~~vDViGvv~~v~~~~~i~~k~~g~~~~kR~i~i~D~t~~~i~vtLWg~~a~~~~~~~~~Vi~~   80 (122)
T d1jmca2           1 QFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAI   80 (122)
T ss_dssp             CCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEE
T ss_pred             CcccEeHHHhhccCCCCeEEEEEEEEEccCcEEEEEcCCCCceeEEEEEEEcCCCCEEEEEEEchHhhhhCCCCCCEEEE
Confidence            48999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             EeEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhccC
Q psy15132        122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQT  163 (786)
Q Consensus       122 ~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~~~  163 (786)
                      +++||++|+| ++|+++++|+|++|||+|||++||+||.++|
T Consensus        81 k~~~v~~~~g-~sL~~~~~s~i~~Npdi~ea~~Lr~wy~~~g  121 (122)
T d1jmca2          81 KGARVSDFGG-RSLSVLSSSTIIANPDIPEAYKLRGWFDAEG  121 (122)
T ss_dssp             EEEEEECTTS-SEEECCSSCEEESSCCSHHHHHHHHHHHHTT
T ss_pred             eeeEEeeccC-ceEeccCcceEEECCCcHHHHHHHHHHHhcC
Confidence            9999999985 6899999999999999999999999999875

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-28  Score=223.01  Aligned_cols=116  Identities=59%  Similarity=1.062  Sum_probs=111.4

Q ss_pred             ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132        441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V  520 (786)
                      +++||++|+|++++|+|+|||++||++|.|++.+++|++|+|+|+|++|+|+|++|++++++|++.|++|+||+|++|.|
T Consensus         1 ~~~PI~~L~p~~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G~I~~t~~~~~~~~f~~~l~~G~vy~i~~~~V   80 (116)
T d1jmca1           1 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTL   80 (116)
T ss_dssp             CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEECCEE
T ss_pred             CcEeHHHcCCCCCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCCCEEEEEchhhhhhhHhhcccCCEEEEcceEE
Confidence            37899999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             eccCCcccccCCceEEEEccccEEEEccCCCCCCCCcc
Q psy15132        521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV  558 (786)
Q Consensus       521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~  558 (786)
                      ++++++|+.++|+|||.|+..|.|++++|..  +||.+
T Consensus        81 ~~~~~~y~~~~~~yei~f~~~T~I~~~~d~~--~iP~i  116 (116)
T d1jmca1          81 KIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTV  116 (116)
T ss_dssp             EECCGGGCCCCCSEEEECCTTCEEEECCSCS--CCCCC
T ss_pred             EEccCcEeccCCcEEEEECCCcEEEECCCCC--CCCCC
Confidence            9999999999999999999999999998866  78863

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.7e-20  Score=165.86  Aligned_cols=92  Identities=38%  Similarity=0.720  Sum_probs=88.1

Q ss_pred             eeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEE
Q psy15132        559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV  638 (786)
Q Consensus       559 ~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i  638 (786)
                      +|+|+||+||.+..++..|||||+|++|++++++++|++|++..+|+|.|+|+|+.+|+|||||++|+.|+...++||+|
T Consensus         1 ~y~F~~i~di~~~~~~~~vDViGvv~~v~~~~~i~~k~~g~~~~kR~i~i~D~t~~~i~vtLWg~~a~~~~~~~~~Vi~~   80 (122)
T d1jmca2           1 QFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAI   80 (122)
T ss_dssp             CCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEE
T ss_pred             CcccEeHHHhhccCCCCeEEEEEEEEEccCcEEEEEcCCCCceeEEEEEEEcCCCCEEEEEEEchHhhhhCCCCCCEEEE
Confidence            48999999999988899999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             EeEEEeecCCc-c
Q psy15132        639 KAARVSEFQGN-L  650 (786)
Q Consensus       639 ~~~~V~~f~G~-L  650 (786)
                      ++++|++|+|+ |
T Consensus        81 k~~~v~~~~g~sL   93 (122)
T d1jmca2          81 KGARVSDFGGRSL   93 (122)
T ss_dssp             EEEEEECTTSSEE
T ss_pred             eeeEEeeccCceE
Confidence            99999999997 5

>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.1e-16  Score=136.63  Aligned_cols=74  Identities=41%  Similarity=0.632  Sum_probs=67.9

Q ss_pred             cCccccCCCcceeeEEEeecccccccccCCcccceEEEEceeEeeeeecCCCCccEEEEEEeeeeeccCcccCccccC
Q psy15132        320 NGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGN  397 (786)
Q Consensus       320 ~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L~~~~iikl~~~~~~~~~~~~~~~~~~~ii~~~~v~~~~~~~~~~ig~  397 (786)
                      .+|+++|||.|++.++||++|+|+++++|.|++||||||++|+++.+++|    |+++||+++||+.++++++.+|||
T Consensus        39 RyR~~lSDG~~~~~~amLatqln~~v~~g~l~~~sii~l~~y~~n~i~~~----k~vlIIldleVl~~~~ev~~kIGn  112 (112)
T d2b3ga1          39 RYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLKSAEAVGVKIGN  112 (112)
T ss_dssp             EEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECTTS----CEEEEEEEEEEEECHHHHCSCCSC
T ss_pred             eEEEEEECcchhhhhhhhhhhhhhhhhcCCccCCCEEEEeEEEEccccCC----ceEEEEeeeEEeccccccccccCC
Confidence            36899999999764589999999999999999999999999999999764    899999999999998888889996

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Archaeal ssDNA-binding protein
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.55  E-value=1.5e-14  Score=129.50  Aligned_cols=97  Identities=18%  Similarity=0.279  Sum_probs=88.9

Q ss_pred             eeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEec
Q psy15132        443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP  522 (786)
Q Consensus       443 ~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~  522 (786)
                      ..|++|+|++.+|+|.|||+.++++|+|...+|+++++++.|.|++|+|++++|++.+    +.|++|++|.|+|++|+.
T Consensus         3 ~kI~dL~pg~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG~i~~~~W~~~~----~~l~~Gdvv~i~na~v~~   78 (115)
T d1o7ia_           3 EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA----GSIKEGQVVKIENAWTTA   78 (115)
T ss_dssp             CCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT----TCCCTTCEEEEEEEEEEE
T ss_pred             ccHHHCCCCCCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCCeEEEEEecccc----ccCCCCCEEEEeeEEEEE
Confidence            3799999999999999999999999999988889999999999999999999999865    468999999999999976


Q ss_pred             cCCcccccCCceEEEEccccEEEEccCC
Q psy15132        523 ANKKFSSINNDYEMSFTHSTTVIPCNED  550 (786)
Q Consensus       523 a~~~y~~~~~~yei~f~~~T~I~~~~d~  550 (786)
                      .       ++.++|++++.|.|+++++.
T Consensus        79 ~-------~g~~el~~~~~s~i~~~~d~   99 (115)
T d1o7ia_          79 F-------KGQVQLNAGSKTKIAEASED   99 (115)
T ss_dssp             E-------TTEEEEEECTTCEEEECCCT
T ss_pred             E-------CCeEEEEECCCeEEEECCCc
Confidence            4       36789999999999999765

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Archaeal ssDNA-binding protein
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.99  E-value=2.5e-09  Score=94.97  Aligned_cols=92  Identities=21%  Similarity=0.403  Sum_probs=79.4

Q ss_pred             hccCCC-CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeC
Q psy15132         52 AEISPD-ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ  130 (786)
Q Consensus        52 ~~~~~~-~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~  130 (786)
                      .++.++ ..+++.|.|+++++++++.+++ | +...+++.|.|++| +|.++||+++|..+  ..|.+|.|+++++++|+
T Consensus         6 ~dL~pg~~~v~i~~~V~~~~~~r~~~~~~-g-~~~v~~~~i~DeTG-~i~~~~W~~~~~~l--~~Gdvv~i~na~v~~~~   80 (115)
T d1o7ia_           6 GNLKPNMESVNVTVRVLEASEARQIQTKN-G-VRTISEAIVGDETG-RVKLTLWGKHAGSI--KEGQVVKIENAWTTAFK   80 (115)
T ss_dssp             GGCCTTCSSEEEEEEEEEECCCEEECCTT-C-CEEEEEEEEEETTE-EEEEEEEGGGTTCC--CTTCEEEEEEEEEEEET
T ss_pred             HHCCCCCCCEEEEEEEEECCCCceeecCC-C-CEEEEEEEEEcCCC-eEEEEEeccccccC--CCCCEEEEeeEEEEEEC
Confidence            334445 4799999999999999998774 4 45678999999999 89999999998754  57899999999999999


Q ss_pred             CceeeeecceeEEEECCC
Q psy15132        131 GGKTLSLSMSSVLSLNPD  148 (786)
Q Consensus       131 g~~~ls~~~~s~i~~npd  148 (786)
                      |...|+++..|.|...++
T Consensus        81 g~~el~~~~~s~i~~~~d   98 (115)
T d1o7ia_          81 GQVQLNAGSKTKIAEASE   98 (115)
T ss_dssp             TEEEEEECTTCEEEECCC
T ss_pred             CeEEEEECCCeEEEECCC
Confidence            999999999999988765

>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Hypothetical protein At4g28440 (F20O9.120)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=1.8e-09  Score=99.57  Aligned_cols=101  Identities=12%  Similarity=0.134  Sum_probs=86.5

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCC----------CCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccC
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR----------GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEK  509 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~----------~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~  509 (786)
                      ..++.|++|.|+..+.+|.|||+...++|.|....          +++++.++.+.|++|.|++++|+++++    .|++
T Consensus        14 ~~~~kI~dL~pg~~~vnl~vkVl~~~~~~~~~r~~~~~~~~~~~g~~~~v~~~~v~DeTG~i~~tlW~~~~~----~l~~   89 (145)
T d1wjja_          14 PVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVD----LMKP   89 (145)
T ss_dssp             CSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHHH----HTCT
T ss_pred             CceeEHHHCCCCCCCceEEEEEEEcccceeecccccccccccccCCCcEEEEEEEEccCCeEEEEEEecccc----ccCc
Confidence            35789999999999999999999998888876532          245799999999999999999998764    5899


Q ss_pred             CcEEEEcceEEeccCCcccccCCceEEEEccccEEEEccCCC
Q psy15132        510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE  551 (786)
Q Consensus       510 G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~  551 (786)
                      |++|.|.|+.++..       ....+|+++..+.|++.++..
T Consensus        90 Gd~v~i~na~v~~~-------~G~~~L~vg~~g~I~~~~e~~  124 (145)
T d1wjja_          90 GATVILRNSRIDMF-------KGTMRLGVDKWGRIEATGAAS  124 (145)
T ss_dssp             TCEEEEEEEEEEEE-------TTEEEEEECTTCCBCCCSCCC
T ss_pred             CCEEEEeeEEEEEE-------CCEEEEEECCCEEEEECCCCc
Confidence            99999999999764       356899999999999887654

>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Hypothetical protein At4g28440 (F20O9.120)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=4.7e-08  Score=89.88  Aligned_cols=102  Identities=14%  Similarity=0.182  Sum_probs=83.0

Q ss_pred             EeecCccchhccCCCCceEEEEEEEEeccceeEeecc--------CCceeeEEEEEEEeCCCCEEEEEecccccccccCC
Q psy15132         43 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT--------NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS  114 (786)
Q Consensus        43 ~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~--------~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~  114 (786)
                      -.|++|+||..  ....|++.+.|.++.++..+..+.        .|.+...+++.+.|+|| +|.+|||++++..+  .
T Consensus        14 ~~~~kI~dL~p--g~~~vnl~vkVl~~~~~~~~~r~~~~~~~~~~~g~~~~v~~~~v~DeTG-~i~~tlW~~~~~~l--~   88 (145)
T d1wjja_          14 PVFVKVEQLKP--GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVDLM--K   88 (145)
T ss_dssp             CSSCCSTTCCT--TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHHHT--C
T ss_pred             CceeEHHHCCC--CCCCceEEEEEEEcccceeecccccccccccccCCCcEEEEEEEEccCC-eEEEEEEecccccc--C
Confidence            35788888754  246799999999999887665431        23345678999999999 99999999998754  6


Q ss_pred             CCcEEEEEeEEEeeeCCceeeeecceeEEEECCCc
Q psy15132        115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI  149 (786)
Q Consensus       115 ~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~  149 (786)
                      .+.+|.|.+|.+++|+|...|+++..++|...++.
T Consensus        89 ~Gd~v~i~na~v~~~~G~~~L~vg~~g~I~~~~e~  123 (145)
T d1wjja_          89 PGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAA  123 (145)
T ss_dssp             TTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCC
T ss_pred             cCCEEEEeeEEEEEECCEEEEEECCCEEEEECCCC
Confidence            78899999999999999999999999998877653

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.6e-06  Score=78.67  Aligned_cols=90  Identities=17%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             eEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccC--CCCcEE
Q psy15132         42 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVI  119 (786)
Q Consensus        42 ~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~--~~~~Vi  119 (786)
                      +|.++++++|.   .+..|||+|||++.+++..  +  +|+. ....|+|.|+|...+.|.++-+..+.+..  ..|+||
T Consensus         3 ~Y~Y~~la~l~---~~~~vnv~gVV~~~~~p~~--s--~g~D-~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII   74 (140)
T d1xjva1           3 NYIYTPLNQLK---GGTIVNVYGVVKFFKPPYL--S--KGTD-YCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIV   74 (140)
T ss_dssp             CCCCCCGGGCC---SSEEEEEEEEEEEEEEEEE--C--SSSS-EEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEE
T ss_pred             cceEeEHHHcc---CCCEEEEEEEEeecCCCEE--c--CCCe-EEEEEEEEeCCCCCeEEEEECCChHHCCCCCCCCCEE
Confidence            47779998874   4889999999999998753  2  3554 57789999999999999999998888874  469999


Q ss_pred             EEEeEEEeeeCCceeeeecc
Q psy15132        120 AVKAARVSEFQGGKTLSLSM  139 (786)
Q Consensus       120 ~i~~~kv~~f~g~~~ls~~~  139 (786)
                      .+++++|..|+|...+....
T Consensus        75 ~l~r~~v~~~~~~~~~~~~~   94 (140)
T d1xjva1          75 RFHRLKIQVYKKETQGITSS   94 (140)
T ss_dssp             EEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEECCeEEEEecC
Confidence            99999999999877654443

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.2e-06  Score=72.16  Aligned_cols=99  Identities=10%  Similarity=0.160  Sum_probs=78.7

Q ss_pred             ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccC--CCCcEEEEE
Q psy15132         45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVK  122 (786)
Q Consensus        45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~--~~~~Vi~i~  122 (786)
                      .+||++|...  ....-+.|.|+...+++++..++ | +....++.|.|++| +|.+|+|++.|+.|..  ..|.|+.|.
T Consensus         2 ~~PI~~L~p~--~~~~~I~~RV~~k~~~r~f~~~~-~-~g~v~~~~l~De~G-~I~~t~~~~~~~~f~~~l~~G~vy~i~   76 (116)
T d1jmca1           2 VVPIASLTPY--QSKWTICARVTNKSQIRTWSNSR-G-EGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFS   76 (116)
T ss_dssp             BCCGGGCCTT--CCCCEEEEEEEEECCCEEEECSS-C-EEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEE
T ss_pred             cEeHHHcCCC--CCCEEEEEEEEEeccceEEECCC-C-CceEEEEEEEcCCC-CEEEEEchhhhhhhHhhcccCCEEEEc
Confidence            3567777542  24566999999999999997653 4 45678999999999 7999999999999863  789999999


Q ss_pred             eEEEeeeCC-------ceeeeecceeEEEECCC
Q psy15132        123 AARVSEFQG-------GKTLSLSMSSVLSLNPD  148 (786)
Q Consensus       123 ~~kv~~f~g-------~~~ls~~~~s~i~~npd  148 (786)
                      +++|...++       ...+.+.+.|+|...||
T Consensus        77 ~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~d  109 (116)
T d1jmca1          77 KGTLKIANKQFTAVKNDYEMTFNNETSVMPCED  109 (116)
T ss_dssp             CCEEEECCGGGCCCCCSEEEECCTTCEEEECCS
T ss_pred             ceEEEEccCcEeccCCcEEEEECCCcEEEECCC
Confidence            999976433       33688888999988765

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.8e-06  Score=74.85  Aligned_cols=83  Identities=18%  Similarity=0.326  Sum_probs=70.1

Q ss_pred             eeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccccccC--CCCCEE
Q psy15132        559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVI  636 (786)
Q Consensus       559 ~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~--~~~~vv  636 (786)
                      +|.++++++|..   +..|+|+|+|++.+++.    ++.|++. ...+.|.|+|...+.|.++.+..+.+..  ..|+||
T Consensus         3 ~Y~Y~~la~l~~---~~~vnv~gVV~~~~~p~----~s~g~D~-~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII   74 (140)
T d1xjva1           3 NYIYTPLNQLKG---GTIVNVYGVVKFFKPPY----LSKGTDY-CSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIV   74 (140)
T ss_dssp             CCCCCCGGGCCS---SEEEEEEEEEEEEEEEE----ECSSSSE-EEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEE
T ss_pred             cceEeEHHHccC---CCEEEEEEEEeecCCCE----EcCCCeE-EEEEEEEeCCCCCeEEEEECCChHHCCCCCCCCCEE
Confidence            577899998865   68999999999999875    2236554 5679999999999999999998888874  479999


Q ss_pred             EEEeEEEeecCCc
Q psy15132        637 AVKAARVSEFQGN  649 (786)
Q Consensus       637 ~i~~~~V~~f~G~  649 (786)
                      .+++++|+.|+|+
T Consensus        75 ~l~r~~v~~~~~~   87 (140)
T d1xjva1          75 RFHRLKIQVYKKE   87 (140)
T ss_dssp             EEEEEEEEEETTE
T ss_pred             EEEEEEEEEECCe
Confidence            9999999999985

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Telomere end binding protein alpha subunit
species: Oxytricha nova [TaxId: 200597]

Probab=97.82  E-value=8.2e-05  Score=69.27  Aligned_cols=101  Identities=22%  Similarity=0.289  Sum_probs=76.6

Q ss_pred             EeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCC------------CCEEEEEeccccccc
Q psy15132         43 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS------------QASVTMTLWGKEAET  110 (786)
Q Consensus        43 ~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s------------~~~i~~tLWg~~a~~  110 (786)
                      |.|++|++... ..+..++|+|||++.+++..  +  +|+ -....|+|+|+|            +..|.|.|+-+.-+.
T Consensus         1 Y~y~~l~~a~~-~~~~~vNv~GVV~~~~~p~~--s--~g~-D~~~tl~I~D~S~~~~~~~~~~~~~~~l~v~~F~~~~~~   74 (169)
T d1jb7a1           1 YEYVELAKASL-TSAQPQHFYAVVIDATFPYK--T--NQE-RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFED   74 (169)
T ss_dssp             CCBCCTTTSCS-SCCSCEEEEEEEEEECCCEE--C--SSS-CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGG
T ss_pred             CeeeeHHHHHH-hcCCeEEEEEEEeecCCcee--c--CCC-cEEEEEEEEeCCCCccccccccccCCceEEEEECCCHHH
Confidence            56777776543 35778999999999998864  2  354 467899999998            346999999998888


Q ss_pred             ccC--CCCcEEEEEeEEEeeeCCceeeeec--ceeEE-EECCCc
Q psy15132        111 FDA--SNKPVIAVKAARVSEFQGGKTLSLS--MSSVL-SLNPDI  149 (786)
Q Consensus       111 ~~~--~~~~Vi~i~~~kv~~f~g~~~ls~~--~~s~i-~~npd~  149 (786)
                      +..  ..|+||.+++++|..|+|...+...  ..|.+ +++.+.
T Consensus        75 LP~V~~~GDII~l~rv~i~~~~g~~~~v~~~~~~SswavF~~~~  118 (169)
T d1jb7a1          75 LPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDK  118 (169)
T ss_dssp             SCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSS
T ss_pred             CCCCCCCCCEEEEEEEEEEEECCceeEEEccccceeEEEEeCCC
Confidence            874  4699999999999999988775432  34555 676643

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Telomere end binding protein alpha subunit
species: Oxytricha nova [TaxId: 200597]

Probab=97.43  E-value=0.00027  Score=65.67  Aligned_cols=84  Identities=24%  Similarity=0.322  Sum_probs=66.7

Q ss_pred             eeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeecc------------ccEEEEEEecccccc
Q psy15132        560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS------------QASVTMTLWGKEAET  627 (786)
Q Consensus       560 ~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s------------~~~i~~tLWg~~a~~  627 (786)
                      |.|++|++.... .+..|+|+|+|++.+++..    +.|+. -...+.|+|+|            +..|.|.|+.+..+.
T Consensus         1 Y~y~~l~~a~~~-~~~~vNv~GVV~~~~~p~~----s~g~D-~~~tl~I~D~S~~~~~~~~~~~~~~~l~v~~F~~~~~~   74 (169)
T d1jb7a1           1 YEYVELAKASLT-SAQPQHFYAVVIDATFPYK----TNQER-YICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFED   74 (169)
T ss_dssp             CCBCCTTTSCSS-CCSCEEEEEEEEEECCCEE----CSSSC-EEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGG
T ss_pred             CeeeeHHHHHHh-cCCeEEEEEEEeecCCcee----cCCCc-EEEEEEEEeCCCCccccccccccCCceEEEEECCCHHH
Confidence            567788765443 3667999999999999863    23543 46799999998            346999999998888


Q ss_pred             ccC--CCCCEEEEEeEEEeecCCc
Q psy15132        628 FDA--SNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       628 ~~~--~~~~vv~i~~~~V~~f~G~  649 (786)
                      +..  ..|+||.+++++|+.|+|+
T Consensus        75 LP~V~~~GDII~l~rv~i~~~~g~   98 (169)
T d1jb7a1          75 LPIIHRAGDIIRVHRATLRLYNGQ   98 (169)
T ss_dssp             SCCCCEETCEEEEEEEEEEEETTE
T ss_pred             CCCCCCCCCEEEEEEEEEEEECCc
Confidence            874  4699999999999999996

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.39  E-value=0.00025  Score=65.25  Aligned_cols=87  Identities=7%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             eeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeecc----ccEEEEEEeccccccccC--CC
Q psy15132        559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS----QASVTMTLWGKEAETFDA--SN  632 (786)
Q Consensus       559 ~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s----~~~i~~tLWg~~a~~~~~--~~  632 (786)
                      .|.++++++-.. ..+..|+++|+|++.+++.  .++ .|..--...+.|+|.|    +..|.|.++.+..+.+..  ..
T Consensus        22 ~~~~~~~~~~~~-k~~~~VnviGVV~~~~~P~--rs~-~G~~Dy~~tl~I~D~S~~~~~~gl~v~iF~~~~e~LP~V~~v   97 (170)
T d1qzga_          22 TFQSIRSSQELQ-KKNTIVNLFGIVKDFTPSR--QSL-HGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQV   97 (170)
T ss_dssp             EEECHHHHTSCC-SSCEEEEEEEEEEEEEEEE--ECS-STTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCST
T ss_pred             eeehhhhhHHHh-ccCCEEEEEEEEeeccCce--ecC-CCCCcEEEEEEEEcCCCCCCCCceEEEEECCChHHCCCcCCC
Confidence            344444444332 2578999999999999864  222 2443346789999998    346999999998888873  56


Q ss_pred             CCEEEEEeEEEeecCCc
Q psy15132        633 KPVIAVKAARVSEFQGN  649 (786)
Q Consensus       633 ~~vv~i~~~~V~~f~G~  649 (786)
                      |+||.+++++|+.|+|+
T Consensus        98 GDII~l~rvkvq~~~g~  114 (170)
T d1qzga_          98 GQPLLLHQITLRSYRDR  114 (170)
T ss_dssp             TCEEEEEEEEEEEETTE
T ss_pred             CCEEEEEEEEEEEECCc
Confidence            99999999999999985

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.38  E-value=0.0005  Score=63.25  Aligned_cols=77  Identities=8%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             CCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCC----CCEEEEEecccccccccC--CCCcEEEEEeEEEee
Q psy15132         55 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS----QASVTMTLWGKEAETFDA--SNKPVIAVKAARVSE  128 (786)
Q Consensus        55 ~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s----~~~i~~tLWg~~a~~~~~--~~~~Vi~i~~~kv~~  128 (786)
                      ..+..|+|+|||++.+++..  ++. |..-....|+|.|+|    +..|.|.++-+..+.+..  ..|+||.+++++|..
T Consensus        34 k~~~~VnviGVV~~~~~P~r--s~~-G~~Dy~~tl~I~D~S~~~~~~gl~v~iF~~~~e~LP~V~~vGDII~l~rvkvq~  110 (170)
T d1qzga_          34 KKNTIVNLFGIVKDFTPSRQ--SLH-GTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRS  110 (170)
T ss_dssp             SSCEEEEEEEEEEEEEEEEE--CSS-TTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEE
T ss_pred             ccCCEEEEEEEEeeccCcee--cCC-CCCcEEEEEEEEcCCCCCCCCceEEEEECCChHHCCCcCCCCCEEEEEEEEEEE
Confidence            45789999999999998743  332 333467899999998    446999999998888874  469999999999999


Q ss_pred             eCCcee
Q psy15132        129 FQGGKT  134 (786)
Q Consensus       129 f~g~~~  134 (786)
                      |+|...
T Consensus       111 ~~g~~q  116 (170)
T d1qzga_         111 YRDRTQ  116 (170)
T ss_dssp             ETTEEE
T ss_pred             ECCceE
Confidence            998765

>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.47  E-value=0.045  Score=52.99  Aligned_cols=180  Identities=9%  Similarity=0.100  Sum_probs=97.8

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC------c-EEEEEcchhHHHhhh-hccCCcEEEEcc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG------E-IRATMFNDECNRFHD-MIEKDKVYYISN  517 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G------~-I~at~~~~~~~kf~~-~l~~G~vy~is~  517 (786)
                      ++..+|.||+..--++|...+  | ..+.++.|+      |..|      . +++++|+..++...+ .|+.|+-+++.+
T Consensus         3 mN~v~l~G~l~~dpe~r~t~~--G-~~~~~f~lA~~~~~~~~~g~~~~~t~~~~v~~~g~~Ae~~~~~~l~KG~~V~V~G   79 (231)
T d1se8a_           3 MNHVYLIGALARDPELRYTGN--G-MAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG   79 (231)
T ss_dssp             EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred             ccEEEEEEEECcCCEEEECCC--C-CEEEEEEEEECCcEECCCCCEEeeeeeeeEEEeCchhhhhhhhccCCCCEEEEEE
Confidence            467789999998777776543  2 367777774      3333      2 899999999988764 699999999996


Q ss_pred             e-EEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeec
Q psy15132        518 C-TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT  596 (786)
Q Consensus       518 ~-~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~  596 (786)
                      - .......+-.......+|..+.   |+.+...+    |...   -.=.+.........|.++|.+..  +++.-.+. 
T Consensus        80 ~l~~~~~~~~dG~~r~~~~i~a~~---v~~l~~~~----~~~~---~~~~~~~m~~~~N~v~l~G~l~~--dpe~r~t~-  146 (231)
T d1se8a_          80 TLEYRQWEAPEGGKRSAVNVKALR---MEQLGTQP----ELIQ---DAGGGVRMSGAMNEVLVLGNVTR--DPEIRYTP-  146 (231)
T ss_dssp             EEEEEEEC-----CEEEEEEEEEE---EEECSSCC----CEEE---CTTSCEEEETCEEEEEEEEEECS--CCEEEECT-
T ss_pred             EEEeeeeECCCCCEEEEEEEEEEE---EEEccCCc----cccc---cccccccccccceeEEEEEEeCC--CcEEEECC-
Confidence            2 2222221111112233444433   33332211    0000   00000000011235889999976  33322333 


Q ss_pred             CCceeeEEEEEE----eeccc------cEEEEEEecccccccc-CCCCCEEEEEe-EEEeecC
Q psy15132        597 NQKTYMKRDITL----VDQSQ------ASVTMTLWGKEAETFD-ASNKPVIAVKA-ARVSEFQ  647 (786)
Q Consensus       597 ~g~~~~kr~i~l----~D~s~------~~i~~tLWg~~a~~~~-~~~~~vv~i~~-~~V~~f~  647 (786)
                      +|..+..-.|-.    .|..|      .-+.|++||+.|+.+. ...|..|.+.| .+.+.|.
T Consensus       147 ~G~~~~~f~va~~~~~~~~~g~~~~~t~~~~v~~~g~~Ae~~~~l~KG~~V~V~G~l~~~~~~  209 (231)
T d1se8a_         147 AGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNEGWT  209 (231)
T ss_dssp             TCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTCCTTCEEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEECCCeECCCCceeeeeEEEEeEecCcHHHHhhhCCCCCEEEEEEEeEeceEE
Confidence            466544333322    22222      2599999999998654 46788787776 3445564

>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.69  Score=40.85  Aligned_cols=112  Identities=11%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             cCccchhccCCCCceEEEEEEEEeccce--eEeec-cCCcee---eEEEEEE------EeC------CCCEEEEEecccc
Q psy15132         46 VPLKTIAEISPDENIDVLGVCIDAAELS--SVTGK-TNQKTY---MKRDITL------VDQ------SQASVTMTLWGKE  107 (786)
Q Consensus        46 ~~~~~i~~~~~~~~vDViGvV~~v~~~~--~i~~k-~~g~~~---~kr~i~l------~D~------s~~~i~~tLWg~~  107 (786)
                      ++|+||   ..+.++|+++.|..+-+..  .+.-+ .+|...   ..+ ...      .|.      .+.+|.|+||+++
T Consensus         3 ~~l~di---~~~~~~DL~cqVv~v~~~~~~~~~L~VwDgT~~~~~~~~-~~~e~~~~~gd~~~~~~~~~l~i~V~lyD~H   78 (151)
T d1xjva2           3 LKLCDV---QPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWR-VLIQDLVLEGDLSHIHRLQNLTIDILVYDNH   78 (151)
T ss_dssp             CCGGGC---CSSCEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCC-CCCCSSCCEECHHHHHHHGGGSEEEEEETTH
T ss_pred             eehhhc---CCCcEEEEEEEEEEEEEecCCEEEEEEecCCCCCCcEec-cccCCccccccccccccCcceEEEEEEECch
Confidence            344444   5689999999999885422  11111 111110   000 000      111      2347999999999


Q ss_pred             cccc-cCCCCcEEEEEeEEEeee--CCc------eeeeecc----eeEEEECC-CchHHHHHHhhhhc
Q psy15132        108 AETF-DASNKPVIAVKAARVSEF--QGG------KTLSLSM----SSVLSLNP-DIPECHKLQGWFST  161 (786)
Q Consensus       108 a~~~-~~~~~~Vi~i~~~kv~~f--~g~------~~ls~~~----~s~i~~np-d~pe~~~l~~w~~~  161 (786)
                      +.-. +.+.|..|.|++++++--  +|.      ..+.+.+    .-.|.+-| +.|.+++|++|+++
T Consensus        79 ~~~ar~lK~GdfV~l~NVh~k~~~~~~~~~~~l~le~hlhgg~~y~rgI~vlp~~~~~~~~lk~~~es  146 (151)
T d1xjva2          79 VHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLES  146 (151)
T ss_dssp             HHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCCEEEEEEEEEEeccCCCccCCcceEEEEEcCCcccCCeeEECCCCChHHHHHHHHhhh
Confidence            8633 247899999999877432  221      2222222    33565555 57999999999875

>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RecG "wedge" domain
domain: RecG "wedge" domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.66  E-value=0.11  Score=48.00  Aligned_cols=70  Identities=13%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             CceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhc--cCCcEEEEcc
Q psy15132        440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI--EKDKVYYISN  517 (786)
Q Consensus       440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l--~~G~vy~is~  517 (786)
                      ....+|++|.++. ..+|.|+|+.. ..+.+    +....+.+.+.|++|+|.+++|+..  -+...+  .+|+.+.|++
T Consensus        49 ~~~~~i~~l~~g~-~vti~g~V~~~-~~~~~----~~~~~~~~~v~D~~g~i~l~fFn~~--~~~~~~k~~~G~~v~v~G  120 (180)
T d1gm5a2          49 RKIFKLNDLLPGE-KVTTQGKIVSV-ETKKF----QNMNILTAVLSDGLVHVPLKWFNQD--YLQTYLKQLTGKEVFVTG  120 (180)
T ss_dssp             SCCCCSSCCCSSC-CCEEEECCCCC-EEEEC----SSCEEEEEEECCSSCCEEEEECSCC--TTHHHHHTTCSSCEEEEE
T ss_pred             cccccccccCcce-eeeeeeEEEee-ccccc----cccceeEEEEEeccceEEEEEeCcH--HHHHHHhhhcCceEEEEE
Confidence            4567899998864 46999999842 11222    2357889999999999999999962  112223  4799988876

>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.37  E-value=0.53  Score=40.95  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             ceeeecccCCC---CCceEEEEEEeecCCcceecCCCCCc-eEEEEEEEcCCCcEEEEEcchhH-------HHhhhhccC
Q psy15132        441 QTHPIVSLSPY---QNKWTIKARVTNKTPIREWNNARGSG-KLFSIDLLDESGEIRATMFNDEC-------NRFHDMIEK  509 (786)
Q Consensus       441 ~~~~I~~L~p~---~~~w~I~~RV~~k~~~r~~~~~~~~g-~~~~~~L~D~~G~I~at~~~~~~-------~kf~~~l~~  509 (786)
                      ..+.|.+|.+.   .....|+|||..+   |.      .| ++.=++|.|.+|.|++.+.....       -++...|..
T Consensus        22 ~r~~i~dl~~~~~~g~~V~v~GwV~~~---R~------~G~kl~F~~LrD~sg~iQ~~v~~~~~~~~~~~~~~~~~~l~~   92 (134)
T d1eova1          22 KRVKFVDLDEAKDSDKEVLFRARVHNT---RQ------QGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNL   92 (134)
T ss_dssp             CCCCGGGCCTTTTTTCEEEEEEEEEEE---EE------CSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCT
T ss_pred             EEEEeccccchhcCCCEEEEEEEEEEE---Ee------CCCcEEEEEEEcCCCcEEEEEEeccccchhHHHHHHHhcCCC
Confidence            34567777543   3567899999853   32      24 57778999999999999875421       134467999


Q ss_pred             CcEEEEcceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132        510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       510 G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~  547 (786)
                      |+++.+.+--+++..+.-+...+++||...+-..+.++
T Consensus        93 es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a  130 (134)
T d1eova1          93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET  130 (134)
T ss_dssp             TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCC
Confidence            99999999776654443444568999999876555443

>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Escherichia coli [TaxId: 562]

Probab=88.85  E-value=1.1  Score=37.10  Aligned_cols=94  Identities=15%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             eeecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHh--hhhccCCcEEEEcce
Q psy15132        443 HPIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF--HDMIEKDKVYYISNC  518 (786)
Q Consensus       443 ~~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf--~~~l~~G~vy~is~~  518 (786)
                      +.+.+|++.  ....+|+|+|-++   |      +.|++.=++|.|.+|.+++++..+..+.+  -..|..+.++.|.+-
T Consensus         4 h~cgeL~~~~~g~~V~v~GWv~~~---R------~~g~i~Fi~LRD~~G~~Q~v~~~~~~~~~~~~~~l~~Es~v~V~G~   74 (106)
T d1c0aa1           4 EYCGQLRLSHVGQQVTLCGWVNRR---R------DLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGT   74 (106)
T ss_dssp             SCGGGCCGGGTTCEEEEEEEEEEE---E------ECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEE
T ss_pred             eEcccCChHHCCCEEEEEEEEEEe---e------eCCCcEEEEEEcCCeEEeEEecccchhHHHHHHhhCccceEEEEeE
Confidence            345666653  3567899998742   3      24677778999999999999987754443  345888899999986


Q ss_pred             EEeccCCccc--ccCCceEEEEccccEEE
Q psy15132        519 TLKPANKKFS--SINNDYEMSFTHSTTVI  545 (786)
Q Consensus       519 ~V~~a~~~y~--~~~~~yei~f~~~T~I~  545 (786)
                      -+....+..+  ...+++||..+.-+.+.
T Consensus        75 V~~r~~~~~n~~~~tg~iEi~v~~i~vl~  103 (106)
T d1c0aa1          75 VRARDEKNINRDMATGEIEVLASSLTIIN  103 (106)
T ss_dssp             EEECCTTTCCTTSTTTTEEEEEEEEEEEE
T ss_pred             EeccCccccCCCCCCCcEEEEEeEEEEEe
Confidence            4432222333  23457999888755443

>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

Probab=88.33  E-value=1.2  Score=38.95  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=55.6

Q ss_pred             ceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcch-----hHHHhhhhccCCcEEEEcceEEeccCCccc
Q psy15132        454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND-----ECNRFHDMIEKDKVYYISNCTLKPANKKFS  528 (786)
Q Consensus       454 ~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~-----~~~kf~~~l~~G~vy~is~~~V~~a~~~y~  528 (786)
                      ..+|.|||+.+   |..      |++.=++|.|.+|.|++.+-.+     ..+.|...|..||++-+.+.-.+..     
T Consensus        56 ~V~vaGRI~~~---R~~------Gk~~F~~i~D~~g~iQi~~~~~~~~~~~~~~~~k~ld~GDiIgv~G~~~~Tk-----  121 (143)
T d1e1oa1          56 EVSVAGRMMTR---RIM------GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-----  121 (143)
T ss_dssp             EEEEEEEEEEE---EEE------TTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT-----
T ss_pred             eEEEEEEEEEE---ccc------CCeeEEEEEeCCceEEEEEccccchhhhHHHHHhcCCcccEEEeecccEECC-----
Confidence            57899999964   543      6888889999999999988543     3344667899999999988654332     


Q ss_pred             ccCCceEEEEccccEEEEc
Q psy15132        529 SINNDYEMSFTHSTTVIPC  547 (786)
Q Consensus       529 ~~~~~yei~f~~~T~I~~~  547 (786)
                        .....|...+.+....|
T Consensus       122 --tGElsi~~~~~~lLsK~  138 (143)
T d1e1oa1         122 --TGELSIHCTELRLLTKA  138 (143)
T ss_dssp             --TCCEEEEEEEEEEEECC
T ss_pred             --CCcEEEEeeEEEEeccc
Confidence              35566666555444443

>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 32 KDa subunit (RPA32) fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=1.1  Score=38.38  Aligned_cols=69  Identities=16%  Similarity=0.259  Sum_probs=46.8

Q ss_pred             CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc----CCCCcEEEEEeEEEeeeCCce
Q psy15132         58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD----ASNKPVIAVKAARVSEFQGGK  133 (786)
Q Consensus        58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~----~~~~~Vi~i~~~kv~~f~g~~  133 (786)
                      ..|.++|+|.++.+.           .....++|-|.||..|.|..|-+.-....    ...|..|-+.| +++.|+|.+
T Consensus        29 ~~V~iVG~V~~i~~~-----------~t~~~y~idDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~G-~lk~f~~~~   96 (128)
T d2pi2a1          29 SQVTIVGIIRHAEKA-----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNKK   96 (128)
T ss_dssp             SEEEEEEEEEEEEEC-----------SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTEE
T ss_pred             EEEEEEEEEEEEEec-----------CCEEEEEEECCCCCcEEEEEECCCCCCccccccccCCCEEEEEE-EEEeeCCeE
Confidence            478899999986432           13557899999998899999954322111    24566766666 788999888


Q ss_pred             eeeec
Q psy15132        134 TLSLS  138 (786)
Q Consensus       134 ~ls~~  138 (786)
                      ++...
T Consensus        97 ~i~~~  101 (128)
T d2pi2a1          97 SLVAF  101 (128)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77643

>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Primosomal replication protein N, PriB
species: Escherichia coli [TaxId: 562]

Probab=87.06  E-value=1  Score=37.69  Aligned_cols=64  Identities=13%  Similarity=0.103  Sum_probs=50.5

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCC-------cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESG-------EIRATMFNDECNRFHDMIEKDKVYYISNC  518 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G-------~I~at~~~~~~~kf~~~l~~G~vy~is~~  518 (786)
                      .+...|.|||++...+|...+  | ..+.+|.|+=     +.|       .|.+++|+..++.+.+.|+.|+.+.+.++
T Consensus         6 ~N~v~L~G~l~~dpelr~T~~--G-~~v~~f~la~~~~~~e~~~~r~~~~~i~vv~~g~~Ae~~~~~l~kG~~v~v~G~   81 (111)
T d1v1qa_           6 TNRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGF   81 (111)
T ss_dssp             CEEEEEEEEEEEEEEEEECTT--C-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEE
T ss_pred             eEEEEEEEEecCCcceEECCC--C-CEEEEEEEEeccEEecccceEEEEEEEEEEEeCHHHHHHHHHhcCCCEEEEEEE
Confidence            367899999999988886532  2 3667777752     223       28999999999999999999999999986

>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Escherichia coli [TaxId: 562]

Probab=86.57  E-value=1.8  Score=37.85  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             CCCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG-------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      .++...|.+|+.+--++|...+  | ..+.+|.|+      |..|       + +.+++|+.+++.+...|+.|+.++|.
T Consensus         4 ~mN~v~LiG~l~~dpe~r~~~~--G-~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~~g~~Ae~~~~~l~KG~~V~V~   80 (145)
T d1qvca_           4 GVNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIE   80 (145)
T ss_dssp             CEEEEEEEEEESSCCEEECCSS--S-CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred             cceEEEEEEECCCCCEEEECCC--C-CEEEEEEEEecccccccccccccccceEEeeEEecchhhhHhhhcccCCEEEEE
Confidence            3567899999998777777643  2 357777765      2221       3 99999999999999999999999998


Q ss_pred             c-eEEeccCCcccccCCceEEEEccccEEEE
Q psy15132        517 N-CTLKPANKKFSSINNDYEMSFTHSTTVIP  546 (786)
Q Consensus       517 ~-~~V~~a~~~y~~~~~~yei~f~~~T~I~~  546 (786)
                      + ........+=......++|..+....+..
T Consensus        81 G~l~~~~~~~kdG~~r~~~ei~~~~~~~l~~  111 (145)
T d1qvca_          81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQM  111 (145)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEECTTCEEEEC
T ss_pred             EEEEEeeeECCCCCEEEEEEEEEecCCcEEE
Confidence            7 33333322111112345666654444443

>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-2 [TaxId: 274]

Probab=86.45  E-value=2.3  Score=34.06  Aligned_cols=84  Identities=12%  Similarity=0.120  Sum_probs=58.2

Q ss_pred             eeecccCCCC-CceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132        443 HPIVSLSPYQ-NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK  521 (786)
Q Consensus       443 ~~I~~L~p~~-~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~  521 (786)
                      +.|++|..+. ...+|+|||.++   |.      .|++.=++|.|.+|.+++.+-..      ..+..|+++.+.+--+.
T Consensus         3 ~~I~dl~~~~g~~V~v~GwV~~~---R~------~gk~~Fi~LrD~sg~iQ~v~~~~------~~~~~e~~v~v~G~v~~   67 (93)
T d1n9wa1           3 VLVRDLKAHVGQEVELLGFLHWR---RD------LGRIQFLLLRDRSGVVQVVTGGL------KLPLPESALRVRGLVVE   67 (93)
T ss_dssp             CCGGGGGGCTTSEEEEEEEEEEE---EE------CSSEEEEEEEETTEEEEEEEESC------CCCCTTCEEEEEEEEEE
T ss_pred             EEhHHhhhcCCCEEEEEEEEEeE---Ee------CCCcEEEEEEcCCccceEEeccc------cccccceEEEEEEEEEE
Confidence            3578887653 468999999852   42      36788889999999999886543      34678899888864433


Q ss_pred             ccCCcccccCCceEEEEccccEEEE
Q psy15132        522 PANKKFSSINNDYEMSFTHSTTVIP  546 (786)
Q Consensus       522 ~a~~~y~~~~~~yei~f~~~T~I~~  546 (786)
                      . .+    ....+||..++-..+.+
T Consensus        68 ~-~~----~~~~~Ei~v~~i~il~~   87 (93)
T d1n9wa1          68 N-AK----APGGLEVQAKEVEVLSP   87 (93)
T ss_dssp             C-TT----STTSEEEEEEEEEEEEC
T ss_pred             C-CC----CCCCEEEEEeEEEEEec
Confidence            2 11    24789999877554443

>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.11  E-value=1.9  Score=36.19  Aligned_cols=63  Identities=13%  Similarity=0.270  Sum_probs=48.5

Q ss_pred             CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC-------CC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132        452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-------SG-------E-IRATMFNDECNRFHDMIEKDKVYYIS  516 (786)
Q Consensus       452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~-------~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is  516 (786)
                      .+..+|.+|+.+-..+|...+  | ..+.+|.|+-.       .|       . +.+++|+.+++.+.+.|+.|+-+.+.
T Consensus         2 ~N~V~L~G~l~~dpe~r~~~~--G-~~v~~f~lA~~~~~~~~~~~~~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~   78 (118)
T d1ue1a_           2 DTTITIVGNLTADPELRFTPS--G-AAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVS   78 (118)
T ss_dssp             CCEEEEEEEESSCCEEEECTT--S-CEEEEEEEEECCCCCC-----CCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCEEEEEEEcCcCCEEEECCC--C-CEEEEEEEEecccccccCCCcccccceeeEEEEeChHHHHHHHHhccCCCEEEEE
Confidence            356789999998777787653  2 36777777521       11       3 99999999999999999999999998


Q ss_pred             c
Q psy15132        517 N  517 (786)
Q Consensus       517 ~  517 (786)
                      +
T Consensus        79 G   79 (118)
T d1ue1a_          79 G   79 (118)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 32 KDa subunit (RPA32) fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=1.2  Score=38.28  Aligned_cols=63  Identities=14%  Similarity=0.256  Sum_probs=43.3

Q ss_pred             ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccccc----cCCCCCEEEEEeEEEeecCCc
Q psy15132        575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEFQGN  649 (786)
Q Consensus       575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~----~~~~~~vv~i~~~~V~~f~G~  649 (786)
                      ..|.++|+|.++...           ...-.+.|-|.||..|.|..|-+.....    ....|..|.+.| +++.|+|+
T Consensus        29 ~~V~iVG~V~~i~~~-----------~t~~~y~idDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~G-~lk~f~~~   95 (128)
T d2pi2a1          29 SQVTIVGIIRHAEKA-----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNK   95 (128)
T ss_dssp             SEEEEEEEEEEEEEC-----------SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTE
T ss_pred             EEEEEEEEEEEEEec-----------CCEEEEEEECCCCCcEEEEEECCCCCCccccccccCCCEEEEEE-EEEeeCCe
Confidence            468999999986432           1345789999999789999996432211    135677777766 77888886

>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

Probab=85.56  E-value=2.2  Score=34.87  Aligned_cols=88  Identities=11%  Similarity=0.125  Sum_probs=58.4

Q ss_pred             eeecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHH----HhhhhccCCcEEEEc
Q psy15132        443 HPIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN----RFHDMIEKDKVYYIS  516 (786)
Q Consensus       443 ~~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~----kf~~~l~~G~vy~is  516 (786)
                      +-+.+|++.  ....+|+|||.++   |.      .|++.=++|.|.+|.|++++-.+.++    ++...|..|+++.+.
T Consensus         5 h~~~el~~~~~G~~V~v~Gwv~~~---R~------~g~i~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~l~~es~v~V~   75 (103)
T d1b8aa1           5 HYSSEITEELNGQKVKVAGWVWEV---KD------LGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVE   75 (103)
T ss_dssp             CCGGGCCGGGTTCEEEEEEEEEEE---EE------ETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEE
T ss_pred             cChhhCChhHCCCEEEEEEEEehh---cc------CCCcEEEEEEcCCEeeeEEEeccccchhhhhHHhhCCcceEEEEE
Confidence            346677653  3567999999853   43      36778889999999999998655431    233458899999999


Q ss_pred             ceEEeccCCcccccCCceEEEEccccEE
Q psy15132        517 NCTLKPANKKFSSINNDYEMSFTHSTTV  544 (786)
Q Consensus       517 ~~~V~~a~~~y~~~~~~yei~f~~~T~I  544 (786)
                      +--.+ ..+    ....+||...+-..+
T Consensus        76 G~v~~-~~~----~~~~iEi~v~~i~il   98 (103)
T d1b8aa1          76 GVVNF-TPK----AKLGFEILPEKIVVL   98 (103)
T ss_dssp             EEEEE-CTT----STTSEEEEEEEEEEE
T ss_pred             EEEEE-CCC----CCccEEEEeeEEEEE
Confidence            75332 211    134588877654333

>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-1 [TaxId: 274]

Probab=82.22  E-value=2.7  Score=34.45  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             eecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchh-HHHhhhhccCCcEEEEcceEE
Q psy15132        444 PIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE-CNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       444 ~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~-~~kf~~~l~~G~vy~is~~~V  520 (786)
                      .+.+|++.  ....+|+|+|-.+   |      ..|++.=++|.|.+|.|++++-.+. .-..-..|..+.++.+.+--.
T Consensus         6 ~~geL~~~~~g~~V~l~GWV~~~---R------~~g~i~Fi~LRD~~G~iQ~v~~~~~~~~~~~~~l~~Es~I~V~G~V~   76 (104)
T d1l0wa1           6 YAGSLRETHVGEEVVLEGWVNRR---R------DLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVR   76 (104)
T ss_dssp             CGGGCCGGGTTCEEEEEEEEEEE---E------ECSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE
T ss_pred             ccccCChHHCCCEEEEEEEEEeh---h------cCCCeEEEEEECCCCceEEecccchhHHHHHhhcCcccEEEEEEEEe
Confidence            45667654  3467899998742   3      2367777899999999999986542 212234588899999988433


Q ss_pred             eccCCcccccCCceEEEEccccEE
Q psy15132        521 KPANKKFSSINNDYEMSFTHSTTV  544 (786)
Q Consensus       521 ~~a~~~y~~~~~~yei~f~~~T~I  544 (786)
                      +.....-+...+.+||...+-..+
T Consensus        77 ~r~~~n~~~~tG~iEi~v~~i~iL  100 (104)
T d1l0wa1          77 LRPEPNPRLATGRVEVELSALEVL  100 (104)
T ss_dssp             ECSSCCTTSTTTTEEEEEEEEEEE
T ss_pred             eCCccCCCCCCCCEEEEEeEEEEE
Confidence            221111122246799988764443

>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Telomere end binding protein alpha subunit
species: Oxytricha nova [TaxId: 200597]

Probab=81.37  E-value=1.5  Score=35.97  Aligned_cols=86  Identities=14%  Similarity=0.257  Sum_probs=60.6

Q ss_pred             eeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCc-EEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132        442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTL  520 (786)
Q Consensus       442 ~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~-I~at~~~~~~~kf~~~l~~G~vy~is~~~V  520 (786)
                      +.||..-....+.+.+.|+|++..++-+|.|        .+-|-|.+|. -...++.    .-+|.|..|+|+.|..+.+
T Consensus         7 ~~pL~kAq~~kgDFdvvaKi~qI~e~DeYTn--------elklkD~sgqtw~t~~~k----~KFPhl~~G~vvRIRSat~   74 (124)
T d1jb7a2           7 YTALNKAQAQKGDFDVVAKILQVHELDEYTN--------ELKLKDASGQVFYTLSLK----LKFPHVRTGEVVRIRSATY   74 (124)
T ss_dssp             SCCGGGGGGCSSCEEEEEEEEEEEECSSSEE--------EEEEEETTCCEEEEEEET----TTCTTCCTTCEEEEEEEEE
T ss_pred             hccHHHHHhhccchhhhhhhheeecchhhcc--------eeeeccCCCCEeehhhhh----hcCCccccCceEEEEeeec
Confidence            5677777777789999999997766555543        5678999995 3333444    3468899999999999887


Q ss_pred             eccCCcccccCCceEEEEccccEEE
Q psy15132        521 KPANKKFSSINNDYEMSFTHSTTVI  545 (786)
Q Consensus       521 ~~a~~~y~~~~~~yei~f~~~T~I~  545 (786)
                      ...+.      ..-.|.|..++.|.
T Consensus        75 detst------~kk~L~lShySNIm   93 (124)
T d1jb7a2          75 DETST------QKKVLILSHYSNII   93 (124)
T ss_dssp             CTTCC------SSCEEEEEEEEEEE
T ss_pred             ccccc------cceeEEeeccccee
Confidence            65432      23356676666663

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=80.28  E-value=0.3  Score=37.43  Aligned_cols=27  Identities=37%  Similarity=1.046  Sum_probs=22.4

Q ss_pred             CCCCCCCCcc-eeeCCCceeecccCCCcCC
Q psy15132        223 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFN  251 (786)
Q Consensus       223 aC~~~~C~kK-v~~~~~~~~~C~~C~~~~~  251 (786)
                      -||  .|++. |....-|.|.|.+|+..+.
T Consensus        29 ~Cp--~Cgk~~vkR~a~GIW~C~kC~~~~A   56 (73)
T d1vqoz1          29 ACP--NCGEDRVDRQGTGIWQCSYCDYKFT   56 (73)
T ss_dssp             CCS--SSSCSCEEEEETTEEEETTTCCEEE
T ss_pred             cCC--CCCCceeEEEEEEEEECCCCCCEEe
Confidence            799  89984 7677889999999998753