Psyllid ID: psy15138

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MASIVDQTPCTAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMHY
Secondary Structure (PSIPRED)
ccccccccccHHHHccHHHHHHccccccccccccccccEEEEEEEccccccccccHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEccccccccEEEEEEEEEcccccccEEEccccccEEcccccHHHHHHcHHHHHHHHcccccEEcEEEEEccccccccccccccccccHHHcccccEEEEEEccccccHHHHHHHHcccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEcccccccHHHHHHHHEEEcccccccccccccccEEEEEEEEEcccccccccHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEEccccccEEEEEEEccccccccccEEEHHEccccEEcccccccccHHHccccccccEEEccccccccHHHHHHHHccEEEEEHcccccHHHHHHHHHHccccccEEEEEEc
Coil and Loop (DISEMBL)
masivdqtpctaenAASVFETRiherdddlpeaspadhsmlqsKVGANAGIVGMTKEHLGLALALSVPVFVVVTkidmcppnvlQDTLKLLVRILkspgcrkvpvmnclisptEEQFDLLQKKIKSLIdngrgetiydigigqdggenglkpdeYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLthgeldngrghARQKLFrhkhemesgrtssvgndilgfdsvgnvvnkpehgsldWVKICERSAKVITFIDLAGHERYLKTTVFgmtghvpdfgmlmhy
Flexible Loop (DISEMBL)
masivdqtpctaenAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKldngltgqyllrkrvesqdfLEIRVAVVGNVDAGKSTLLGVLthgeldngrGHARQKLFRhkhemesgrtssvgndILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMHY
Low Complexity Region (SEG)
MASIVDQTPCTAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMHY
Disordered region (IsUnstruct)
*********************************************GANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGG*******EYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGEL***************************NDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGML***
Disordered Region (DISOPRED)
**SI***TPCTAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILK*********************************NGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK***************VGNDILGFDSVGNVVNKPEHG*LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMHY
Disordered Region (DISEMBL)
**********TAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH*********SSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMHY
Disordered Region (DISPRO)
****VDQTPCTAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMHY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASIVDQTPCTAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
D2XV59	669	GTP-binding protein 1 OS=	yes	N/A	0.656	0.313	0.712	1e-82
O08582	668	GTP-binding protein 1 OS=	yes	N/A	0.656	0.314	0.712	2e-82
Q58DC5	669	GTP-binding protein 1 OS=	yes	N/A	0.656	0.313	0.712	2e-82
O00178	669	GTP-binding protein 1 OS=	yes	N/A	0.656	0.313	0.712	3e-82
Q5R8Q7	602	GTP-binding protein 1 (Fr	yes	N/A	0.653	0.347	0.706	8e-81
Q5XGS8	654	GTP-binding protein 1 OS=	N/A	N/A	0.656	0.321	0.688	3e-80
Q17045	591	GTP-binding protein AGP-1	N/A	N/A	0.609	0.329	0.575	9e-58
Q9BX10	602	GTP-binding protein 2 OS=	no	N/A	0.646	0.343	0.495	1e-52
Q3UJK4	602	GTP-binding protein 2 OS=	no	N/A	0.646	0.343	0.495	1e-52
Q18905	613	GTP-binding protein cgp-1	yes	N/A	0.656	0.342	0.502	8e-52

>sp|D2XV59|GTPB1_RAT GTP-binding protein 1 OS=Rattus norvegicus GN=Gtpbp1 PE=1 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/212 (71%), Positives = 174/212 (82%), Gaps = 2/212 (0%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct: 67  LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query: 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
           +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct: 127 IEADVILLRERQESGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query: 229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH--GSLDWVKICERSAK 286
           NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+   GSL+W KICE+S+K
Sbjct: 187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSSK 246

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct: 247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity.
Rattus norvegicus (taxid: 10116)

>sp|O08582|GTPB1_MOUSE GTP-binding protein 1 OS=Mus musculus GN=Gtpbp1 PE=1 SV=2

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/212 (71%), Positives = 174/212 (82%), Gaps = 2/212 (0%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct: 67  LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query: 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
           +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct: 127 IEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query: 229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH--GSLDWVKICERSAK 286
           NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+   GSL+W KICE+S+K
Sbjct: 187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSSK 246

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct: 247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q58DC5|GTPB1_BOVIN GTP-binding protein 1 OS=Bos taurus GN=GTPBP1 PE=2 SV=2

 Score =  305 bits (782), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/212 (71%), Positives = 173/212 (81%), Gaps = 2/212 (0%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct: 67  LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query: 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
           +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct: 127 IEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query: 229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH--GSLDWVKICERSAK 286
           NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+   GSL+W KICE+S K
Sbjct: 187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTK 246

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct: 247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity.

Bos taurus (taxid: 9913)

>sp|O00178|GTPB1_HUMAN GTP-binding protein 1 OS=Homo sapiens GN=GTPBP1 PE=1 SV=3

 Score =  305 bits (781), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 151/212 (71%), Positives = 173/212 (81%), Gaps = 2/212 (0%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct: 67  LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query: 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
           +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct: 127 IEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query: 229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH--GSLDWVKICERSAK 286
           NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+   GSL+W KICE+S K
Sbjct: 187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTK 246

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct: 247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q5R8Q7|GTPB1_PONAB GTP-binding protein 1 (Fragment) OS=Pongo abelii GN=GTPBP1 PE=2 SV=2

 Score =  300 bits (769), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 149/211 (70%), Positives = 171/211 (81%), Gaps = 2/211 (0%)

Query: 110 ISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTL 169
           +SPT EQ+D L +++   +D G G TIY IG G DG E GL   + EAS AT++S+A  +
Sbjct: 1   VSPTSEQYDSLLRQMWERMDEGCGGTIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQI 60

Query: 170 EADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDN 229
           EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELDN
Sbjct: 61  EADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDN 120

Query: 230 GRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH--GSLDWVKICERSAKV 287
           GRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+   GSL+W KICE+S KV
Sbjct: 121 GRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKV 180

Query: 288 ITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           ITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct: 181 ITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 211

Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity.

Pongo abelii (taxid: 9601)

>sp|Q5XGS8|GTPB1_XENLA GTP-binding protein 1 OS=Xenopus laevis GN=gtpbp1 PE=2 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/212 (68%), Positives = 172/212 (81%), Gaps = 2/212 (0%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L+SP+ EQ+D L  +++  +D GRGETIY IG G DG E GL   + EASVAT+ S+A  
Sbjct: 56  LVSPSAEQYDSLLHQLRDRMDEGRGETIYVIGQGSDGTEYGLNEADMEASVATVTSMAEQ 115

Query: 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
           + AD +LLR+ +   G    YL+RK V   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct: 116 IVADMILLREHQEAGGKVQDYLVRKSVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 175

Query: 229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH--GSLDWVKICERSAK 286
           NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFD+ G VVNKP++  GSL+W KICE+S+K
Sbjct: 176 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDNHGQVVNKPDNHGGSLEWTKICEKSSK 235

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           +ITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct: 236 IITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 267

Promotes degradation of target mRNA species. Plays a role in the regulation of circadian mRNA stability. Binds GTP and has GTPase activity.

Xenopus laevis (taxid: 8355)

>sp|Q17045|AGP1_ASCSU GTP-binding protein AGP-1 OS=Ascaris suum GN=AGP-1 PE=2 SV=1

 Score =  224 bits (570), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 141/198 (71%), Gaps = 3/198 (1%)

Query: 124 IKSLIDNGRGETIYDIGIG-QDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLD 182
           IKS++  G GE I ++G+   D  + GL  +E + +    + L          L  ++  
Sbjct: 58  IKSMLCCGEGEAIVELGVSIYDDTQKGLSKEELQIAEERHKQLMNQSNISSSHLVTKRCG 117

Query: 183 NGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK 242
           +  T  +L+R  V++ DF+E+RVAVVGNVDAGKSTLLGVLTH  LD+GRG AR+KLFRHK
Sbjct: 118 DLYTSFHLIRDSVDADDFIEVRVAVVGNVDAGKSTLLGVLTHSALDDGRGQARRKLFRHK 177

Query: 243 HEMESGRTSSVGNDILGFDSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYL 300
           HE ESGRTSSVGNDILGF   G +VNKP+   G+LDWV IC  SAKVITFIDLAGHE+YL
Sbjct: 178 HEFESGRTSSVGNDILGFSMDGQIVNKPDVHSGNLDWVSICRDSAKVITFIDLAGHEKYL 237

Query: 301 KTTVFGMTGHVPDFGMLM 318
           KTT+FGMTGH PD+ MLM
Sbjct: 238 KTTIFGMTGHAPDYTMLM 255

Ascaris suum (taxid: 6253)

>sp|Q9BX10|GTPB2_HUMAN GTP-binding protein 2 OS=Homo sapiens GN=GTPBP2 PE=2 SV=1

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 153/216 (70%), Gaps = 9/216 (4%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L++P++ +F+ L  ++K  +  GRGE +Y IG+  +G   GL  +E  AS+ TL  +A  
Sbjct: 74  LVNPSQYRFEHLVTQMKWRLQEGRGEAVYQIGVEDNGLLVGLAEEEMRASLKTLHRMAEK 133

Query: 169 LEADCVLLRQRKLD------NGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVL 222
           + AD  +LR+R++D        +T + L+RK  ++Q FL++RVAV+GNVD+GKSTLLGVL
Sbjct: 134 VGADITVLREREVDYDSDMPRKIT-EVLVRKVPDNQQFLDLRVAVLGNVDSGKSTLLGVL 192

Query: 223 THGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE 282
           T GELDNGRG AR  LFRH HE++SGRTSS+  +ILGF+S G VVN  +  + +  +ICE
Sbjct: 193 TQGELDNGRGRARLNLFRHLHEIQSGRTSSISFEILGFNSKGEVVNYSDSRTAE--EICE 250

Query: 283 RSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
            S+K+ITFIDLAGH +YL TT+FG+T + PD  +L+
Sbjct: 251 SSSKMITFIDLAGHHKYLHTTIFGLTSYCPDCALLL 286

Homo sapiens (taxid: 9606)

>sp|Q3UJK4|GTPB2_MOUSE GTP-binding protein 2 OS=Mus musculus GN=Gtpbp2 PE=2 SV=1

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 153/216 (70%), Gaps = 9/216 (4%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L++P++ +F+ L  ++K  +  GRGE +Y IG+  +G   GL  +E  AS+ TL  +A  
Sbjct: 74  LVNPSQYRFEHLVTQMKWRLQEGRGEAVYQIGVEDNGLLVGLAEEEMRASLKTLHRMAEK 133

Query: 169 LEADCVLLRQRKLD------NGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVL 222
           + AD  +LR+R++D        +T + L+RK  ++Q FL++RVAV+GNVD+GKSTLLGVL
Sbjct: 134 VGADITVLREREVDYDSDVPRKIT-EVLVRKVPDNQQFLDLRVAVLGNVDSGKSTLLGVL 192

Query: 223 THGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE 282
           T GELDNGRG AR  LFRH HE++SGRTSS+  +ILGF+S G VVN  +  + +  +ICE
Sbjct: 193 TQGELDNGRGRARLNLFRHLHEIQSGRTSSISFEILGFNSKGEVVNYSDSRTAE--EICE 250

Query: 283 RSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
            S+K+ITFIDLAGH +YL TT+FG+T + PD  +L+
Sbjct: 251 SSSKMITFIDLAGHHKYLHTTIFGLTSYCPDCALLL 286

Mus musculus (taxid: 10090)

>sp|Q18905|CGP1_CAEEL GTP-binding protein cgp-1 OS=Caenorhabditis elegans GN=cgp-1 PE=2 SV=2

 Score =  204 bits (518), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 147/219 (67%), Gaps = 9/219 (4%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGI----GQDGGENGLKPDEYE-ASVATLQ 163
           L+  T E  +     ++  +  G GE + ++G          ++GL  ++ + A+ A L+
Sbjct: 40  LLRSTPEDVEKYMIHVRKQLMEGEGECLVELGAPINSNSKNPKSGLSEEDLDKAADAQLK 99

Query: 164 SLATTLEADCVLLRQRKLDNG--LTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGV 221
            L         ++R+++   G   T  +++R     +DF+E RVAVVGNVDAGKSTLLGV
Sbjct: 100 ILEKIPAVGTKVIRRKQTGGGSLFTEVWIIRDPPTEKDFIEARVAVVGNVDAGKSTLLGV 159

Query: 222 LTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE--HGSLDWVK 279
           LTH  LD+GRG AR KLFRHKHE ESGRTSSVGNDILGFD  GN+VNKP+  + +LDWV+
Sbjct: 160 LTHSALDDGRGAARTKLFRHKHEFESGRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQ 219

Query: 280 ICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           I    AK++TFIDLAGHE+YLKTT+FGMTGH+PD+ MLM
Sbjct: 220 IGSDCAKLVTFIDLAGHEKYLKTTIFGMTGHMPDYTMLM 258

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
289724647	635	GTP-binding protein GP-1 [Glossina morsi	0.656	0.330	0.816	1e-101
307211430	629	GTP-binding protein 1 [Harpegnathos salt	0.656	0.333	0.830	1e-100
322802294	631	hypothetical protein SINV_08756 [Solenop	0.656	0.332	0.825	1e-100
383849485	634	PREDICTED: GTP-binding protein 1-like [M	0.656	0.331	0.820	1e-99
332028974	630	GTP-binding protein 1 [Acromyrmex echina	0.65	0.330	0.828	2e-99
380011475	634	PREDICTED: GTP-binding protein 1-like [A	0.656	0.331	0.820	3e-99
328793097	634	PREDICTED: GTP-binding protein 1-like [A	0.65	0.328	0.823	5e-98
340713505	634	PREDICTED: GTP-binding protein 1-like [B	0.656	0.331	0.816	1e-97
350409298	634	PREDICTED: GTP-binding protein 1-like [B	0.656	0.331	0.816	2e-97
307171608	637	GTP-binding protein 1 [Camponotus florid	0.640	0.321	0.826	4e-97

>gi|289724647|gb|ADD18301.1| GTP-binding protein GP-1 [Glossina morsitans morsitans]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/212 (81%), Positives = 197/212 (92%)

Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLA 166
           N L+SPTEEQ+DLL+K+++    + RGETIY+IG+G+DGGE+GL  DEY+ASVAT+QSLA
Sbjct: 11  NVLVSPTEEQYDLLKKRLEERTQDSRGETIYEIGVGEDGGEHGLDEDEYQASVATMQSLA 70

Query: 167 TTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
           TTL AD VLL+QRK++ GLT QYL+RKRV+  DF+EIRVAVVGNVDAGKSTLLGVLTHGE
Sbjct: 71  TTLNADMVLLKQRKVEKGLTAQYLIRKRVDMSDFMEIRVAVVGNVDAGKSTLLGVLTHGE 130

Query: 227 LDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAK 286
           LDNGRGHARQ+LFRHKHEMESGRTSSVGNDILGFDS+GNVVNKP+HG+LDWVKICE+SAK
Sbjct: 131 LDNGRGHARQRLFRHKHEMESGRTSSVGNDILGFDSIGNVVNKPDHGTLDWVKICEKSAK 190

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 191 VITFIDLAGHERYLKTTVFGMTGHAPDFGMLM 222

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211430|gb|EFN87557.1| GTP-binding protein 1 [Harpegnathos saltator]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/212 (83%), Positives = 197/212 (92%)

Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLA 166
           N L+SP+E+Q++LL KK+K  I +G  ETI+DIGI +DG E+GLK DEY+ASVATLQSLA
Sbjct: 34  NVLVSPSEDQYELLLKKLKERIQDGGSETIFDIGIAEDGSEDGLKEDEYDASVATLQSLA 93

Query: 167 TTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
           TTLEA+CVLLRQ K+D+GLTGQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGE
Sbjct: 94  TTLEANCVLLRQSKVDHGLTGQYLIRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 153

Query: 227 LDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAK 286
           LDNGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+K
Sbjct: 154 LDNGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSK 213

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 214 VITFIDLAGHERYLKTTVFGMTGHAPDFGMLM 245

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802294|gb|EFZ22690.1| hypothetical protein SINV_08756 [Solenopsis invicta]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/212 (82%), Positives = 195/212 (91%)

Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLA 166
           N L+SP+E+Q++LL +++K  I +G  ETI+DIGI +DG E+GLK DEYEASVATLQSLA
Sbjct: 35  NVLVSPSEDQYELLLRRLKERIQDGGSETIFDIGIAEDGSEDGLKEDEYEASVATLQSLA 94

Query: 167 TTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
            TLEADCVLLRQ K D+GLTGQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGE
Sbjct: 95  ATLEADCVLLRQSKADHGLTGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 154

Query: 227 LDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAK 286
           LDNGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+K
Sbjct: 155 LDNGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSK 214

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 215 VITFIDLAGHERYLKTTVFGMTGHAPDFGMLM 246

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849485|ref|XP_003700375.1| PREDICTED: GTP-binding protein 1-like [Megachile rotundata]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/212 (82%), Positives = 194/212 (91%)

Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLA 166
           + L+SP+E+Q++LL +++K  I  G  ETI+DIGIG+DG E+GLK DEYEASVATLQSLA
Sbjct: 35  SVLVSPSEDQYELLLRRLKERIQGGGSETIFDIGIGEDGSEDGLKDDEYEASVATLQSLA 94

Query: 167 TTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
            TLEADCVLLRQ K+D GL GQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGE
Sbjct: 95  ATLEADCVLLRQSKVDQGLIGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 154

Query: 227 LDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAK 286
           LDNGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+K
Sbjct: 155 LDNGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSK 214

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 215 VITFIDLAGHERYLKTTVFGMTGHAPDFGMLM 246

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028974|gb|EGI68989.1| GTP-binding protein 1 [Acromyrmex echinatior]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/210 (82%), Positives = 194/210 (92%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L+SP+E+Q++LL +++K  I +G  ETI+DIGI +DG E+GLK DEYEASVATLQSLA T
Sbjct: 37  LVSPSEDQYELLLRRLKERIQDGGSETIFDIGIAEDGSEDGLKEDEYEASVATLQSLAAT 96

Query: 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
           LEADCVLLRQ K D+GLTGQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGELD
Sbjct: 97  LEADCVLLRQSKADHGLTGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 156

Query: 229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVI 288
           NGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+KVI
Sbjct: 157 NGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSKVI 216

Query: 289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           TFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 217 TFIDLAGHERYLKTTVFGMTGHAPDFGMLM 246

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011475|ref|XP_003689828.1| PREDICTED: GTP-binding protein 1-like [Apis florea]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 174/212 (82%), Positives = 195/212 (91%)

Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLA 166
           + L+SP+E+Q++LL K++K  I +G  ETI+DIGIG DG E+GLK DEYEAS+ATLQSLA
Sbjct: 35  SVLVSPSEDQYELLLKRLKERIQDGGSETIFDIGIGGDGSEDGLKEDEYEASLATLQSLA 94

Query: 167 TTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
            TLEADCVLLRQ K+D+GL GQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGE
Sbjct: 95  ATLEADCVLLRQSKVDHGLIGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 154

Query: 227 LDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAK 286
           LDNGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+K
Sbjct: 155 LDNGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSK 214

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 215 VITFIDLAGHERYLKTTVFGMTGHAPDFGMLM 246

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793097|ref|XP_623581.2| PREDICTED: GTP-binding protein 1-like [Apis mellifera]

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/210 (82%), Positives = 192/210 (91%)

Query: 109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
           L+SP+E+Q++LL K +K  I +G  ETI+DIGI  DG E+GLK DEYEAS+ATLQSLA T
Sbjct: 37  LVSPSEDQYELLLKHLKERIQDGGSETIFDIGISGDGSEDGLKEDEYEASLATLQSLAAT 96

Query: 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
           LEADCVLLRQ K+D+GL GQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGELD
Sbjct: 97  LEADCVLLRQTKVDHGLIGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 156

Query: 229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVI 288
           NGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+KVI
Sbjct: 157 NGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSKVI 216

Query: 289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           TFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 217 TFIDLAGHERYLKTTVFGMTGHAPDFGMLM 246

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713505|ref|XP_003395283.1| PREDICTED: GTP-binding protein 1-like [Bombus terrestris]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/212 (81%), Positives = 195/212 (91%)

Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLA 166
           N L+SP+E+Q++LL ++++  + +G  ETI+DIGIG+DG E+GLK DEYEASVATLQSLA
Sbjct: 35  NVLVSPSEDQYELLLRRLRERVQDGGSETIFDIGIGEDGSEDGLKEDEYEASVATLQSLA 94

Query: 167 TTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
            TLEADCVLLRQ K+D GL GQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGE
Sbjct: 95  ATLEADCVLLRQSKIDQGLIGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 154

Query: 227 LDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAK 286
           LDNGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+K
Sbjct: 155 LDNGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSK 214

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 215 VITFIDLAGHERYLKTTVFGMTGHAPDFGMLM 246

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409298|ref|XP_003488685.1| PREDICTED: GTP-binding protein 1-like [Bombus impatiens]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/212 (81%), Positives = 195/212 (91%)

Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLA 166
           N L+SP+E+Q++LL ++++  + +G  ETI+DIGIG+DG E+GLK DEYEASVATLQSLA
Sbjct: 35  NVLVSPSEDQYELLLRRLRERVQDGGSETIFDIGIGEDGSEDGLKEDEYEASVATLQSLA 94

Query: 167 TTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
            TLEADCVLLRQ K+D GL GQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGE
Sbjct: 95  ATLEADCVLLRQSKVDQGLIGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 154

Query: 227 LDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAK 286
           LDNGRG ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+K
Sbjct: 155 LDNGRGLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSK 214

Query: 287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           VITFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 215 VITFIDLAGHERYLKTTVFGMTGHAPDFGMLM 246

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171608|gb|EFN63393.1| GTP-binding protein 1 [Camponotus floridanus]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/207 (82%), Positives = 191/207 (92%)

Query: 112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEA 171
           P+E+Q++LL +++K  I +G  ETI++IGI +DG E+GLK DEYEASVATLQSLA TLEA
Sbjct: 48  PSEDQYELLLRRLKERIQDGGSETIFEIGIAEDGTESGLKEDEYEASVATLQSLAATLEA 107

Query: 172 DCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGR 231
           DCVLLRQ K D+GLTGQYL+R+R++ QDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGR
Sbjct: 108 DCVLLRQIKADHGLTGQYLVRRRLDRQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGR 167

Query: 232 GHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFI 291
           G ARQKLFRHKHE E+GRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE+S+KVITFI
Sbjct: 168 GLARQKLFRHKHEAETGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICEKSSKVITFI 227

Query: 292 DLAGHERYLKTTVFGMTGHVPDFGMLM 318
           DLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct: 228 DLAGHERYLKTTVFGMTGHAPDFGMLM 254

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
FB|FBgn0027836	669	Dgp-1 "Dgp-1" [Drosophila mela	0.656	0.313	0.742	6.2e-85
ZFIN|ZDB-GENE-041007-2	652	gtpbp1l "GTP binding protein 1	0.656	0.322	0.726	1e-77
ZFIN|ZDB-GENE-030909-12	657	gtpbp1 "GTP binding protein 1"	0.656	0.319	0.702	9e-77
RGD|1306758	669	Gtpbp1 "GTP binding protein 1"	0.656	0.313	0.716	3.1e-76
UNIPROTKB|E1C1E1	668	GTPBP1 "Uncharacterized protei	0.656	0.314	0.716	3.9e-76
UNIPROTKB|F1NIC4	666	GTPBP1 "Uncharacterized protei	0.656	0.315	0.716	3.9e-76
MGI|MGI:109443	668	Gtpbp1 "GTP binding protein 1"	0.656	0.314	0.716	5e-76
UNIPROTKB|G3MX26	603	GTPBP1 "GTP-binding protein 1"	0.656	0.348	0.716	6.3e-76
UNIPROTKB|Q58DC5	669	GTPBP1 "GTP-binding protein 1"	0.656	0.313	0.716	6.3e-76
UNIPROTKB|E2RL43	669	GTPBP1 "Uncharacterized protei	0.656	0.313	0.716	6.3e-76

FB|FBgn0027836 Dgp-1 "Dgp-1" [Drosophila melanogaster (taxid:7227)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 156/210 (74%), Positives = 185/210 (88%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+ PTEEQ +LLQK+++  I +  GETIY+IG+G+DG ++GL P+++EASVATL  LA  
Sbjct:    50 LVQPTEEQIELLQKRLQDRIADNCGETIYEIGVGEDGSDSGLNPEQFEASVATLHLLAAN 109

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             ++AD V LR+R+ + G + Q+L+RK +++ DF+EIRVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   110 IDADVVKLRERRAEKGQSAQFLIRKHIDTTDFMEIRVAVVGNVDAGKSTLLGVLTHGELD 169

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVI 288
             NGRGHARQ+LFRHKHE+ESGRTSSVGNDILGFD VGNVVNKP+HG LDWVKICE SAKVI
Sbjct:   170 NGRGHARQRLFRHKHEIESGRTSSVGNDILGFDGVGNVVNKPDHGHLDWVKICENSAKVI 229

Query:   289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             TFIDLAGHERYLKTTVFGMTGH PDFGMLM
Sbjct:   230 TFIDLAGHERYLKTTVFGMTGHAPDFGMLM 259

GO:0005525 "GTP binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0003924 "GTPase activity" evidence=IEA

ZFIN|ZDB-GENE-041007-2 gtpbp1l "GTP binding protein 1, like" [Danio rerio (taxid:7955)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 154/212 (72%), Positives = 176/212 (83%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+SPT EQ+D LQK+++  ++ G GETIY IG+G DGG+ GL   + EASVAT+QSL   
Sbjct:    69 LVSPTGEQYDCLQKQLRERMEEGCGETIYVIGMGTDGGDYGLDERDMEASVATVQSLCEQ 128

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR++    G    YL+R+RV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   129 VEADLILLREKMETAGRVRDYLIRRRVGEADFLEVRVAVVGNVDAGKSTLLGVLTHGELD 188

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHEMESGRTSSVGNDILGFD  G VVNKP+ HG SLDW KICERS+K
Sbjct:   189 NGRGFARQKLFRHKHEMESGRTSSVGNDILGFDQEGQVVNKPDSHGGSLDWTKICERSSK 248

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   249 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 280

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030909-12 gtpbp1 "GTP binding protein 1" [Danio rerio (taxid:7955)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 149/212 (70%), Positives = 175/212 (82%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+SP  EQ+DLL ++++  +D G GETIY +G+G DGG+ GL   + +ASVAT++S+   
Sbjct:    66 LVSPNGEQYDLLLRQLRERMDEGCGETIYVLGVGSDGGDYGLNESDMQASVATVRSMCEQ 125

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+R    G    YL+R+RV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   126 IEADLILLRERTEAGGQVRDYLIRRRVGEADFLEVRVAVVGNVDAGKSTLLGVLTHGELD 185

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHEMESGRTSSVGNDILGFD  G VVNKP+ HG SLDW KICE+S+K
Sbjct:   186 NGRGFARQKLFRHKHEMESGRTSSVGNDILGFDQEGQVVNKPDSHGGSLDWTKICEKSSK 245

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   246 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 277

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1306758 Gtpbp1 "GTP binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 152/212 (71%), Positives = 175/212 (82%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct:    67 LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   127 IEADVILLRERQESGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+ HG SL+W KICE+S+K
Sbjct:   187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSSK 246

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0061014 "positive regulation of mRNA catabolic process" evidence=IDA

UNIPROTKB|E1C1E1 GTPBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 152/212 (71%), Positives = 173/212 (81%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             ++SPT EQ+D L +++   ID G GETIY IG G DG E GL   + EAS ATL+S+A  
Sbjct:    67 MVSPTSEQYDSLLRQMSERIDEGCGETIYVIGQGSDGTEYGLSEADMEASYATLKSMAEQ 126

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+ +   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   127 IEADVILLREHQEAGGKVQDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+ HG SL+W KICE+S K
Sbjct:   187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTK 246

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1NIC4 GTPBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 152/212 (71%), Positives = 173/212 (81%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             ++SPT EQ+D L +++   ID G GETIY IG G DG E GL   + EAS ATL+S+A  
Sbjct:    65 MVSPTSEQYDSLLRQMSERIDEGCGETIYVIGQGSDGTEYGLSEADMEASYATLKSMAEQ 124

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+ +   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   125 IEADVILLREHQEAGGKVQDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 184

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+ HG SL+W KICE+S K
Sbjct:   185 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTK 244

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   245 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 276

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:109443 Gtpbp1 "GTP binding protein 1" [Mus musculus (taxid:10090)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 152/212 (71%), Positives = 175/212 (82%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct:    67 LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   127 IEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+ HG SL+W KICE+S+K
Sbjct:   187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSSK 246

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

UNIPROTKB|G3MX26 GTPBP1 "GTP-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 152/212 (71%), Positives = 174/212 (82%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct:    67 LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   127 IEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+ HG SL+W KICE+S K
Sbjct:   187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTK 246

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q58DC5 GTPBP1 "GTP-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 152/212 (71%), Positives = 174/212 (82%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct:    67 LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   127 IEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+ HG SL+W KICE+S K
Sbjct:   187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTK 246

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0061014 "positive regulation of mRNA catabolic process" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2RL43 GTPBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 152/212 (71%), Positives = 174/212 (82%)

Query:   109 LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT 168
             L+SPT EQ+D L +++   +D G GETIY IG G DG E GL   + EAS AT++S+A  
Sbjct:    67 LVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQ 126

Query:   169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD 228
             +EAD +LLR+R+   G    YL+RKRV   DFLE+RVAVVGNVDAGKSTLLGVLTHGELD
Sbjct:   127 IEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELD 186

Query:   229 NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPE-HG-SLDWVKICERSAK 286
             NGRG ARQKLFRHKHE+ESGRTSSVGNDILGFDS GNVVNKP+ HG SL+W KICE+S K
Sbjct:   187 NGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTK 246

Query:   287 VITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
             VITFIDLAGHE+YLKTTVFGMTGH+PDF MLM
Sbjct:   247 VITFIDLAGHEKYLKTTVFGMTGHLPDFCMLM 278

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O08582	GTPB1_MOUSE	No assigned EC number	0.7122	0.6562	0.3143	yes	N/A
O00178	GTPB1_HUMAN	No assigned EC number	0.7122	0.6562	0.3139	yes	N/A
D2XV59	GTPB1_RAT	No assigned EC number	0.7122	0.6562	0.3139	yes	N/A
Q58DC5	GTPB1_BOVIN	No assigned EC number	0.7122	0.6562	0.3139	yes	N/A
Q18905	CGP1_CAEEL	No assigned EC number	0.5022	0.6562	0.3425	yes	N/A
Q5R8Q7	GTPB1_PONAB	No assigned EC number	0.7061	0.6531	0.3471	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	320
cd04165	224	cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP	9e-75
COG5258	527	COG5258, GTPBP1, GTPase [General function predicti	1e-40
cd04165	224	cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP	1e-31
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	4e-17
COG5258	527	COG5258, GTPBP1, GTPase [General function predicti	6e-12
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	6e-12
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	2e-11
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	2e-07

>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family includes GTPBP2

 Score =  228 bits (584), Expect = 9e-75
 Identities = 90/116 (77%), Positives = 101/116 (87%), Gaps = 1/116 (0%)

Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSV 263
           RVAVVGNVDAGKSTLLGVLT GELDNGRG AR  LFRHKHE+ESGRTSSV NDILGFDS 
Sbjct: 1   RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNDILGFDSD 60

Query: 264 GNVVNKPEHGSLDW-VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           G VVN P++   +  V+ICE+S+KV+TFIDLAGHERYLKTTVFGMTG+ PD+ ML+
Sbjct: 61  GEVVNYPDNHLGELDVEICEKSSKVVTFIDLAGHERYLKTTVFGMTGYAPDYAMLV 116

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM. Length = 224

>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only]

 Score =  148 bits (375), Expect = 1e-40
 Identities = 69/205 (33%), Positives = 113/205 (55%), Gaps = 1/205 (0%)

Query: 113 TEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEAD 172
            E++ D L  ++K  ++ G GE +Y IG+  DG   GL  ++   S+  L+ LA  + A 
Sbjct: 29  KEDRLDRLAGQMKYRLEEGDGEAVYVIGVSDDGEPLGLSDEKLVESIEVLRELAREVGAS 88

Query: 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232
             ++R  +  +G   + L+R++ E      + V V G+VD GKSTL+GVL  G LD+G G
Sbjct: 89  IYIVRVHEGTDGYVAEVLVRRKTEEAP-EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDG 147

Query: 233 HARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFID 292
             R  L   KHE+E G ++ +   + GFD    V  K      +   + +R+ K+++F+D
Sbjct: 148 ATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVD 207

Query: 293 LAGHERYLKTTVFGMTGHVPDFGML 317
             GHE +L+TT+ G+ G   D+G+L
Sbjct: 208 TVGHEPWLRTTIRGLLGQKVDYGLL 232

Length = 527

>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family includes GTPBP2

 Score =  117 bits (295), Expect = 1e-31
 Identities = 54/69 (78%), Positives = 60/69 (86%), Gaps = 2/69 (2%)

Query: 37  DHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILK 96
           D++ML   VGANAGI+GMTKEHLGLALAL VPVFVVVTKIDM P NVLQ+TLK L R+LK
Sbjct: 111 DYAMLV--VGANAGIIGMTKEHLGLALALKVPVFVVVTKIDMTPANVLQETLKDLKRLLK 168

Query: 97  SPGCRKVPV 105
           SPG RK+PV
Sbjct: 169 SPGVRKLPV 177

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM. Length = 224

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 27/117 (23%)

Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ--KLFRHKHEMESGRTSSVGNDILGFD 261
            V V+G+VD GK+TL G L +      R   R+   L   K E E G T   G       
Sbjct: 1   NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVV----- 55

Query: 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
                         +W K      + I FID  GHE + K TV G+     D  +L+
Sbjct: 56  ------------EFEWPK------RRINFIDTPGHEDFSKETVRGLA--QADGALLV 92

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only]

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 37  DHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILK 96
           D+ +L   V A+ G+  MTKEHLG+ALA+ +PV VVVTKIDM P +  Q  ++ +  +LK
Sbjct: 228 DYGLLV--VAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLK 285

Length = 527

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 45  VGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVP 104
           V AN G+   T+EHL +ALA  +P+ V V KID        + L+ +  +LK  G   + 
Sbjct: 93  VDANEGVEPQTREHLNIALAGGLPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLK 152

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 27/118 (22%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF 260
             + ++G+VD GK+TL   L +  G +        + L + K E E G T  +       
Sbjct: 4   RNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAV---- 59

Query: 261 DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
                                E   ++I  ID  GH  + K  + G      D  +L+
Sbjct: 60  -------------------SFETKKRLINIIDTPGHVDFTKEMIRGA--SQADGAILV 96

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 45  VGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRIL 95
           V A  G++  T+EHL LA  L VP+ V + KID      L++ ++ + R L
Sbjct: 97  VDAVEGVMPQTREHLLLAKTLGVPIIVFINKIDRVDDAELEEVVEEISREL 147

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
KOG1143|consensus	591		99.97
KOG0463|consensus	641		99.93
KOG0927|consensus	614		99.93
COG0488	530	Uup ATPase components of ABC transporters with dup	99.92
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.87
KOG0066|consensus	807		99.86
KOG0062|consensus	582		99.84
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.83
PRK11147	635	ABC transporter ATPase component; Reviewed	99.81
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.81
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.8
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.8
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.8
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.79
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.78
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.78
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.78
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.78
PLN03073	718	ABC transporter F family; Provisional	99.75
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.75
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.75
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.74
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.73
KOG0460|consensus	449		99.72
COG4181	228	Predicted ABC-type transport system involved in ly	99.71
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.71
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.7
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.7
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.7
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.69
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.69
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.67
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.67
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.66
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.64
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.62
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.62
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.62
COG1123	539	ATPase components of various ABC-type transport sy	99.61
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.61
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.61
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.6
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.6
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.6
KOG0458|consensus	603		99.6
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.6
COG4559	259	ABC-type hemin transport system, ATPase component	99.59
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.57
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.57
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.57
KOG0463|consensus	641		99.57
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.56
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.56
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.56
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.56
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.56
COG1162	301	Predicted GTPases [General function prediction onl	99.56
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.56
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.56
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.56
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.55
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.55
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.55
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.55
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.55
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.55
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.55
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.55
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.55
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.55
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.55
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.55
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.54
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.54
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.54
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.54
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.54
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.54
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.54
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.53
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.53
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.53
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.53
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.53
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.53
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.53
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.53
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.53
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.53
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.52
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.52
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.52
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.52
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.52
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.52
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.52
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.52
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.52
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.52
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.52
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.52
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.52
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.52
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
PRK10908	222	cell division protein FtsE; Provisional	99.51
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.51
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.51
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.51
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.51
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.51
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.51
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.5
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.5
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.5
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.5
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.5
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.5
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.5
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.5
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.49
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.49
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.49
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.49
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.49
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.49
PRK10938	490	putative molybdenum transport ATP-binding protein	99.49
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.49
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.49
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.48
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.48
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.48
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.48
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.48
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.48
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.48
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.48
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.48
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.48
PTZ00141	446	elongation factor 1- alpha; Provisional	99.48
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.48
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.48
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.48
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.47
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.47
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.47
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.47
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.47
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.47
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.47
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.47
KOG1143|consensus	591		99.47
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.47
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.47
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.47
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.47
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.47
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.47
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.47
PRK01889	356	GTPase RsgA; Reviewed	99.47
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.47
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.47
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.46
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.46
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.46
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.46
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.46
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.46
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.46
PLN00043	447	elongation factor 1-alpha; Provisional	99.45
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.45
PLN03126	478	Elongation factor Tu; Provisional	99.45
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.45
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.45
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.45
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.45
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.45
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.45
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.45
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.44
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.44
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.44
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.44
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.44
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.44
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.44
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.44
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.44
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.44
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.44
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.44
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.43
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.43
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.43
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.43
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.43
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.42
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.42
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.42
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.42
COG1123	539	ATPase components of various ABC-type transport sy	99.42
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.42
PRK12736	394	elongation factor Tu; Reviewed	99.42
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.42
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.42
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.41
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.41
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.41
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.41
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.41
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.41
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.41
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.41
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.4
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.4
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.4
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.4
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.39
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.39
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.39
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.39
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.39
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.39
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.39
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.39
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.39
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.38
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.38
PRK10938	490	putative molybdenum transport ATP-binding protein	99.38
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.38
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.38
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.38
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.38
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.38
PLN03127	447	Elongation factor Tu; Provisional	99.38
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.38
KOG0058|consensus	716		99.38
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.37
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.37
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.37
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.37
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.37
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.36
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.36
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.36
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.36
PRK13409	590	putative ATPase RIL; Provisional	99.36
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.36
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.35
KOG0057|consensus	591		99.35
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.35
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.35
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.35
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.34
PRK12735	396	elongation factor Tu; Reviewed	99.34
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.34
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.34
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.34
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.34
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.34
CHL00071	409	tufA elongation factor Tu	99.34
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.34
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.34
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.34
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.33
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.33
KOG0459|consensus	501		99.33
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.33
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.33
PRK12288	347	GTPase RsgA; Reviewed	99.33
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.33
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.33
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.33
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.33
COG4987	573	CydC ABC-type transport system involved in cytochr	99.33
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.33
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.33
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.32
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.32
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.32
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.32
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.31
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.31
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.31
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.31
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.31
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.3
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.3
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.3
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.29
COG4988	559	CydD ABC-type transport system involved in cytochr	99.29
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.29
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.29
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.29
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.29
COG4172	534	ABC-type uncharacterized transport system, duplica	99.29
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.28
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.28
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.28
PRK00049	396	elongation factor Tu; Reviewed	99.28
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.28
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.28
PLN03211	659	ABC transporter G-25; Provisional	99.28
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.28
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.28
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.28
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.27
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.27
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.27
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.27
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.27
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.26
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.26
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.26
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.26
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.26
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.26
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.26
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.26
COG4172	534	ABC-type uncharacterized transport system, duplica	99.26
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.26
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.26
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.25
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.25
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.25
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.25
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.24
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.24
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.24
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.24
COG0488	530	Uup ATPase components of ABC transporters with dup	99.24
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.24
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.23
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.23
PRK00098	298	GTPase RsgA; Reviewed	99.23
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.22
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.22
PRK12289	352	GTPase RsgA; Reviewed	99.22
KOG0055|consensus	1228		99.21
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.21
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.21
KOG0055|consensus	1228		99.21
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.2
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.2
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.2
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.2
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.19
KOG1145|consensus	683		99.19
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.19
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.19
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.19
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.19
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.18
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.18
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.18
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.18
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.18
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.18
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.17
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.17
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.17
PLN03232	1495	ABC transporter C family member; Provisional	99.16
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.16
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.15
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.15
PRK13409	590	putative ATPase RIL; Provisional	99.14
PLN03130	1622	ABC transporter C family member; Provisional	99.14
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.14
PRK12317	425	elongation factor 1-alpha; Reviewed	99.14
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.14
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.13
cd03246	173	ABCC_Protease_Secretion This family represents the	99.12
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.12
KOG0056|consensus	790		99.12
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.12
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.12
PTZ00243	1560	ABC transporter; Provisional	99.11
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.11
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.1
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.09
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.09
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.09
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.09
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.09
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.08
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.07
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.07
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.06
KOG0061|consensus	613		99.06
PLN03140	1470	ABC transporter G family member; Provisional	99.04
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.03
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.02
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.02
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.02
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.01
KOG0466|consensus	466		99.01
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.0
PRK05306	787	infB translation initiation factor IF-2; Validated	99.0
PLN03140	1470	ABC transporter G family member; Provisional	98.99
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.98
PLN03073	718	ABC transporter F family; Provisional	98.97
KOG0059|consensus	885		98.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.96
PRK11147	635	ABC transporter ATPase component; Reviewed	98.95
KOG0461|consensus	522		98.95
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.94
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.94
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.93
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.91
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.9
PLN03130	1622	ABC transporter C family member; Provisional	98.9
PTZ00243	1560	ABC transporter; Provisional	98.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.88
CHL00189	742	infB translation initiation factor 2; Provisional	98.88
PRK00093	435	GTP-binding protein Der; Reviewed	98.86
PRK04004	586	translation initiation factor IF-2; Validated	98.86
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.86
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.85
KOG1144|consensus	1064		98.83
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.83
PLN03232	1495	ABC transporter C family member; Provisional	98.82
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.82
PRK00007	693	elongation factor G; Reviewed	98.81
PRK10218	607	GTP-binding protein; Provisional	98.75
PRK03003	472	GTP-binding protein Der; Reviewed	98.75
PTZ00416	836	elongation factor 2; Provisional	98.73
PRK14845	1049	translation initiation factor IF-2; Provisional	98.7
KOG0462|consensus	650		98.7
KOG0054|consensus	1381		98.68
PRK07560	731	elongation factor EF-2; Reviewed	98.68
PRK12739	691	elongation factor G; Reviewed	98.68
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.66
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.65
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.65
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.64
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.63
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.62
KOG0054|consensus	1381		98.61
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.61
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.6
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.59
PRK05433	600	GTP-binding protein LepA; Provisional	98.58
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.57
KOG0065|consensus	1391		98.56
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.56
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.56
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.55
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.55
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.54
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.53
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.52
KOG0052|consensus	391		98.51
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.51
cd00881	189	GTP_translation_factor GTP translation factor fami	98.51
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.5
COG4178	604	ABC-type uncharacterized transport system, permeas	98.49
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.46
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.46
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.45
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.45
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.45
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.42
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.4
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.39
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.36
COG2229	187	Predicted GTPase [General function prediction only	98.34
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.33
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.3
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.29
PRK13351	687	elongation factor G; Reviewed	98.27
KOG0060|consensus	659		98.27
PRK12740	668	elongation factor G; Reviewed	98.21
COG1160	444	Predicted GTPases [General function prediction onl	98.2
KOG0064|consensus	728		98.2
KOG2355|consensus	291		98.16
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.16
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.16
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.15
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.14
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.11
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.08
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.06
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.05
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.05

>KOG1143|consensus

Probab=99.97  E-value=1.3e-30  Score=237.00  Aligned_cols=220  Identities=45%  Similarity=0.739  Sum_probs=198.9

Q ss_pred             CCccccCccccccCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeee
Q psy15138         98 PGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLR  177 (320)
Q Consensus        98 ~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  177 (320)
                      +...++.||..+.+++..+|+++.+||+||+.|++||++|+||++|.|-..||+++||..++++|+.||...++.+.+++
T Consensus        58 ~~lgnieyk~klvnpt~~r~~hlitqMKWRLrEG~GEAiYeIGVeD~G~l~GL~deemnaSL~TL~~MA~~lGAs~~vLr  137 (591)
T KOG1143|consen   58 TELGNIEYKAKLVNPTTSRIQHLITQMKWRLREGQGEAIYEIGVEDGGILSGLTDEEMNASLRTLRTMAQALGASMVVLR  137 (591)
T ss_pred             cccCceeeeeeecCccHHHHHHHHHHHHhhhhcCCCcEEEEeeeccCceeeccCHHHHHHHHHHHHHHHHHhCCceEEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeecCCCe-----eeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138        178 QRKLDNGL-----TGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS  252 (320)
Q Consensus       178 ~~~~~~~~-----~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~  252 (320)
                      .+.+...-     .....++++.++-.|-..|+|++|...+|||||+.+|+.|.++.+.|..+++.+++.|++..|+.+.
T Consensus       138 ek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSs  217 (591)
T KOG1143|consen  138 EKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSS  217 (591)
T ss_pred             eeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccc
Confidence            88764321     1222456777777777999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        253 VGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       253 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      +..+.++|+..++++++..  .+..+++.++..++..++|+.|+.+|.++.+++|+|.-|+|+||+|
T Consensus       218 is~evlGFd~~g~vVNY~~--~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvV  282 (591)
T KOG1143|consen  218 ISNEVLGFDNRGKVVNYAQ--NMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVV  282 (591)
T ss_pred             cchhcccccccccccchhh--cccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEE
Confidence            9999999999999998643  3456778888899999999999999999999999999999999997

>KOG0463|consensus

Probab=99.93  E-value=6.2e-27  Score=213.36  Aligned_cols=212  Identities=66%  Similarity=0.996  Sum_probs=197.3

Q ss_pred             cccCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeee
Q psy15138        108 CLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTG  187 (320)
Q Consensus       108 ~~~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (320)
                      .+...+.++.+.+....+.|+.+++||++|+||+..+|...||++++++.+..++..+++.+.++...++.+....+-+.
T Consensus        39 ~l~~~t~e~ve~~~~~~~~~~~egcGEtiyeiG~gsdg~~sGLseed~eas~at~~~~ae~I~Adv~klreR~~~gG~~~  118 (641)
T KOG0463|consen   39 FLLRSTPEDVEKYMIHVRKQLMEGCGETIYEIGAGSDGPKSGLSEEDLEASAATQLKIAEKIPADVTKLRERKQTGGGTE  118 (641)
T ss_pred             eEecCCHHHHHHHHHHHHHHHhccCCcEEEEecCCCCCCccCCCHHHHHHHHHHHHHHHhhCccHhhhhhhHHhcCCCee
Confidence            45667788888888888899999999999999999999999999999999999999999999999888888777777788


Q ss_pred             eecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCcccccee
Q psy15138        188 QYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVV  267 (320)
Q Consensus       188 ~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v  267 (320)
                      .+.+++.+...+|...++|++|...+||||||.+|++|.++.++|..+...++|+|+...|+++.+-.+.++|+..++++
T Consensus       119 ~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvV  198 (641)
T KOG0463|consen  119 VWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVV  198 (641)
T ss_pred             EEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccc
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        268 NKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       268 ~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      +.+..  ..+.|..+.+...+++.++|+.|+++|+++.++++.|..|||+||+|
T Consensus       199 NKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMi  252 (641)
T KOG0463|consen  199 NKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMI  252 (641)
T ss_pred             cCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEe
Confidence            98864  36778888888999999999999999999999999999999999987

>KOG0927|consensus

Probab=99.93  E-value=2.7e-26  Score=218.13  Aligned_cols=253  Identities=17%  Similarity=0.126  Sum_probs=172.0

Q ss_pred             CCchhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHH-hhc---------CCCcccc----Ccccccc
Q psy15138         50 GIVGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVR-ILK---------SPGCRKV----PVMNCLI  110 (320)
Q Consensus        50 g~~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~-~l~---------~~~~~~i----~~kl~~~  110 (320)
                      +..+.-|+|++||++|++ |.+++|    ||+|+.++.|||++|+++.. ++.         ..+||+|    ..++++|
T Consensus       221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y  300 (614)
T KOG0927|consen  221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY  300 (614)
T ss_pred             ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeee
Confidence            334577889999999999 888888    99999999999999999998 344         3679988    7788999


Q ss_pred             CCchhHHHHHHHHHHHHHH---cCcccceecccccCCCCCCC--CCHHHHHHHHHHHHHHHHhcCC--------------
Q psy15138        111 SPTEEQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENG--LKPDEYEASVATLQSLATTLEA--------------  171 (320)
Q Consensus       111 ~gnyd~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~--l~~~~~~~~~~~l~~~~~~~~~--------------  171 (320)
                      .|||++|...+.+..+++.   +.+++++..+.....+...+  --..+.++..+++.+|.+.--.              
T Consensus       301 ~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~  380 (614)
T KOG0927|consen  301 EGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFP  380 (614)
T ss_pred             cCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcc
Confidence            9999999987776654422   22333333333222222222  2235778888888887764211              


Q ss_pred             -----ceeeeeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhh
Q psy15138        172 -----DCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEME  246 (320)
Q Consensus       172 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~  246 (320)
                           ..+.+.+.+++|+|.........++.+.-.++++++|||||+|||||||++. |.+.|..|.++...    | ..
T Consensus       381 ~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~-gdl~p~~G~vs~~~----H-~~  454 (614)
T KOG0927|consen  381 EVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLIT-GDLQPTIGMVSRHS----H-NK  454 (614)
T ss_pred             cccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHh-hccccccccccccc----c-cc
Confidence                 1235566777788876655555666666669999999999999999999999 99999999988642    2 12


Q ss_pred             cCcceeeeccccCCcc-ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCCEE
Q psy15138        247 SGRTSSVGNDILGFDS-VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPDFG  315 (320)
Q Consensus       247 ~g~v~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~~~  315 (320)
                      .++..|..++.+.++- ..+.+......       ..+.+++-.+++..|+. +....++++||+++..++
T Consensus       455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~-------~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rV  518 (614)
T KOG0927|consen  455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD-------EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRV  518 (614)
T ss_pred             chhhhhhhHhhcCcchhHHHHHHHhccc-------cchHHHHHHHHHHhCCCccccccchhhcccccchhH
Confidence            4455666555554421 11211111111       12334455667777776 667788999999876544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.92  E-value=8e-26  Score=221.72  Aligned_cols=245  Identities=17%  Similarity=0.150  Sum_probs=165.0

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT  113 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn  113 (320)
                      .+..|++++||++|.. |.++++    ||+|+.++.|||++|++++.++.         ..+|++|    .+++..|.||
T Consensus       155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn  234 (530)
T COG0488         155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGN  234 (530)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence            3688899999999999 777777    99999999999999999998654         2778877    7789999999


Q ss_pred             hhHHHHHHHHHHHHHHcCcc---cceecccccCCCCCCC-CCHHHHHHHHHHHHHHHHh---cCCc--------------
Q psy15138        114 EEQFDLLQKKIKSLIDNGRG---ETIYDIGIGQDGGENG-LKPDEYEASVATLQSLATT---LEAD--------------  172 (320)
Q Consensus       114 yd~~~~l~~q~~~~~~~~~~---~~~~~ig~~~~~~~~~-l~~~~~~~~~~~l~~~~~~---~~~~--------------  172 (320)
                      |+.|.+.+++..+++.+...   +.+.++....++.... .+..+.+++.+.+++|.+.   ....              
T Consensus       235 y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~  314 (530)
T COG0488         235 YSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPG  314 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCc
Confidence            99999999988766443332   3333333333443333 3335888999999888732   1110              


Q ss_pred             ----eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhh
Q psy15138        173 ----CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEM  245 (320)
Q Consensus       173 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~  245 (320)
                          ..++.+++++++|...   +..+++.+|.   |+++||+||||+|||||||+|+ |.+.|.+|.|.+.     ...
T Consensus       315 ~~~g~~vl~~~~~~~~y~~~---~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~-g~~~~~~G~v~~g-----~~v  385 (530)
T COG0488         315 KRLGKLVLEFENVSKGYDGG---RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA-GELGPLSGTVKVG-----ETV  385 (530)
T ss_pred             ccCCCeeEEEeccccccCCC---ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHh-hhcccCCceEEeC-----Cce
Confidence                1233444445544332   4555666664   9999999999999999999999 9999999999874     224


Q ss_pred             hcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCC
Q psy15138        246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPD  313 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~  313 (320)
                      .+||+.|.......-.+..+.+......   .     ....+-.+++.+++. +...+++..|||++..
T Consensus       386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~---~-----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~  446 (530)
T COG0488         386 KIGYFDQHRDELDPDKTVLEELSEGFPD---G-----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKA  446 (530)
T ss_pred             EEEEEEehhhhcCccCcHHHHHHhhCcc---c-----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHH
Confidence            4677777653322111111111111000   0     023344566666664 5568899999997643

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.87  E-value=4.2e-22  Score=182.41  Aligned_cols=215  Identities=34%  Similarity=0.573  Sum_probs=177.6

Q ss_pred             cccCccccccC--CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeee
Q psy15138        101 RKVPVMNCLIS--PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQ  178 (320)
Q Consensus       101 ~~i~~kl~~~~--gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  178 (320)
                      +++.+|+++.+  -..++++.+..||+.|+.++.|++.|.+|++++|.+.|++.+++.+++.+|+.++...++.+..++.
T Consensus        15 ~nVEfK~~ls~~hl~~~R~~~La~Qmk~Rl~~GdGeA~YviGVsd~Ge~~Gl~~~~l~esievL~~la~evgA~i~~v~~   94 (527)
T COG5258          15 ENVEFKLTLSPIHLKEDRLDRLAGQMKYRLEEGDGEAVYVIGVSDDGEPLGLSDEKLVESIEVLRELAREVGASIYIVRV   94 (527)
T ss_pred             cceeeeeecCccccChhHHHHHHHHHHHHHHcCCceEEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHhCCEEEEEEE
Confidence            35677776665  6888999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeecccc
Q psy15138        179 RKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDIL  258 (320)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~  258 (320)
                      .....+|.....++.-... -.....++..|+..+|||||+.+|.+|.++.++|..+.....++|+..+|..+..+-..+
T Consensus        95 ~eg~~g~Vaev~vrr~~~~-~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~  173 (527)
T COG5258          95 HEGTDGYVAEVLVRRKTEE-APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVY  173 (527)
T ss_pred             EeccCcEEEEEEEEecccC-CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEE
Confidence            8888888776554321111 111345899999999999999999999999999998888778899999999998888888


Q ss_pred             CCccccceeecCCCCCCCHHhHH---HHHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        259 GFDSVGNVVNKPEHGSLDWVKIC---ERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      +|+.. ..+  ...+.+...+..   +.++++..++|..||+.++.+.+.+|-||++||+||+|
T Consensus       174 Gf~dg-k~~--rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvV  234 (527)
T COG5258         174 GFDDG-KVV--RLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVV  234 (527)
T ss_pred             EecCC-ceE--eecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEE
Confidence            88653 333  122333333333   45667888999999999999999999999999999997

>KOG0066|consensus

Probab=99.86  E-value=2.7e-22  Score=186.74  Aligned_cols=198  Identities=20%  Similarity=0.269  Sum_probs=130.3

Q ss_pred             hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCch
Q psy15138         53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPTE  114 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gny  114 (320)
                      +.-|+|+.||+||++ |.++.+    ||+||.+.-||.+||+.|+++|.         ..+|+.|    ..++.+|.|||
T Consensus       415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY  494 (807)
T KOG0066|consen  415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY  494 (807)
T ss_pred             CceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence            355789999999999 777777    99999999999999999999986         2789877    78899999999


Q ss_pred             hHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhc----------------------
Q psy15138        115 EQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTL----------------------  169 (320)
Q Consensus       115 d~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----------------------  169 (320)
                      .-|.+.-.|-+..+.   +.+.+....+..  .|......+.+..+++.+=..-....                      
T Consensus       495 ~~FKKmY~Qk~~e~~K~yekQeK~LkelKa--~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~V  572 (807)
T KOG0066|consen  495 TLFKKMYAQKMQEHEKNYEKQEKQLKELKA--EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSV  572 (807)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEE
Confidence            999876555432221   112222222210  11111111122222222211100000                      


Q ss_pred             --------CCceeeeeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc
Q psy15138        170 --------EADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH  241 (320)
Q Consensus       170 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~  241 (320)
                              .-.++++-+-++.|+|....+.+..++++.-..+|||||||||.||||||++|. |.++|..|+.+-+    
T Consensus       573 kF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~-Gkl~P~~GE~RKn----  647 (807)
T KOG0066|consen  573 KFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLI-GKLDPNDGELRKN----  647 (807)
T ss_pred             EEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHh-cCCCCCcchhhcc----
Confidence                    001123444455666665555666677666669999999999999999999999 9999999998753    


Q ss_pred             hhhhhcCcceeeecccc
Q psy15138        242 KHEMESGRTSSVGNDIL  258 (320)
Q Consensus       242 ~~~~~~g~v~~~~~~~~  258 (320)
                       |+.++|++.|...+.+
T Consensus       648 -hrL~iG~FdQh~~E~L  663 (807)
T KOG0066|consen  648 -HRLRIGWFDQHANEAL  663 (807)
T ss_pred             -ceeeeechhhhhHHhh
Confidence             4455777777665544

>KOG0062|consensus

Probab=99.84  E-value=4.1e-22  Score=188.80  Aligned_cols=247  Identities=17%  Similarity=0.119  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCch
Q psy15138         53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPTE  114 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gny  114 (320)
                      +.=||+|+||||++. |.++++    ||+|..+..|||+||+++..+..         +.+|+.|    ..|+.+|.|||
T Consensus       201 GGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~  280 (582)
T KOG0062|consen  201 GGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNY  280 (582)
T ss_pred             cchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcH
Confidence            466899999999999 888888    99999999999999999985443         3678877    77899999999


Q ss_pred             hHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCH-HHHHHHHHHHHHHHHhcCC-----------------ce
Q psy15138        115 EQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKP-DEYEASVATLQSLATTLEA-----------------DC  173 (320)
Q Consensus       115 d~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~-----------------~~  173 (320)
                      +.|.+.+.+.+..+.   +-+......+..+++.+.++-+. ..++++++.|.++..-...                 ..
T Consensus       281 ~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~  360 (582)
T KOG0062|consen  281 SQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSP  360 (582)
T ss_pred             HHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCC
Confidence            999998776653211   22223333444555554333333 3899999999775543211                 12


Q ss_pred             eeeeeeecCCCeeeee-cceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138        174 VLLRQRKLDNGLTGQY-LLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS  252 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~  252 (320)
                      +++++.++.+.|+.+. ..+..++...-..+|++++|+||+||||+++++. |.+.|.+|.+....     +.++++++|
T Consensus       361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~-~~l~~~rgi~~~~~-----r~ri~~f~Q  434 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILK-GDLTPTRGIVGRHP-----RLRIKYFAQ  434 (582)
T ss_pred             CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHh-ccCCcccceeeecc-----cceecchhH
Confidence            4667777777776544 3344444333348899999999999999999999 99999999877642     344677777


Q ss_pred             eeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        253 VGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       253 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ..-+.+.........+........    .+...   +-++.+|+. +...+.+.+|||++-
T Consensus       435 hhvd~l~~~v~~vd~~~~~~pG~~----~ee~r---~hl~~~Gl~g~la~~si~~LSGGQK  488 (582)
T KOG0062|consen  435 HHVDFLDKNVNAVDFMEKSFPGKT----EEEIR---RHLGSFGLSGELALQSIASLSGGQK  488 (582)
T ss_pred             hhhhHHHHHhHHHHHHHHhCCCCC----HHHHH---HHHHhcCCCchhhhccccccCCcch
Confidence            654433221111111111111111    12233   344455553 455566899999764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=4.9e-21  Score=164.27  Aligned_cols=124  Identities=17%  Similarity=0.127  Sum_probs=90.2

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------hhhhhcCcceee
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------KHEMESGRTSSV  253 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------~~~~~~g~v~~~  253 (320)
                      ++.+.|+..++++++++.   |++++|+||||||||||||||+ ++.+|++|+|.+++...       ..+.+.|+++|.
T Consensus         7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN-~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~   85 (240)
T COG1126           7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN-GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ   85 (240)
T ss_pred             eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHH-CCcCCCCceEEECCEeccchhhHHHHHHhcCeeccc
Confidence            345566778889988886   9999999999999999999999 99999999999986431       122345555555


Q ss_pred             eccccCCccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        254 GNDILGFDSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       254 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      |..+... ++.+|+..+..  ...++.+.   .+++.++|+.+|+.++.+.+|++|||++.
T Consensus        86 fnLFPHl-TvleNv~lap~~v~~~~k~eA---~~~A~~lL~~VGL~~ka~~yP~qLSGGQq  142 (240)
T COG1126          86 FNLFPHL-TVLENVTLAPVKVKKLSKAEA---REKALELLEKVGLADKADAYPAQLSGGQQ  142 (240)
T ss_pred             ccccccc-hHHHHHHhhhHHHcCCCHHHH---HHHHHHHHHHcCchhhhhhCccccCcHHH
Confidence            5543333 44455544433  34444443   45566777788889999999999999764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.81  E-value=3.5e-20  Score=187.96  Aligned_cols=246  Identities=15%  Similarity=0.135  Sum_probs=146.9

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT  113 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn  113 (320)
                      .+..+.+++||++|-. |.++++    |++|..+..|+++++.++..++.         ...|+++    .+++..|+||
T Consensus       158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~  237 (635)
T PRK11147        158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGN  237 (635)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCC
Confidence            3577889999999999 778888    99999999999999998865543         1345555    6677778999


Q ss_pred             hhHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCC-----------------c
Q psy15138        114 EEQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT-LEA-----------------D  172 (320)
Q Consensus       114 yd~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~-----------------~  172 (320)
                      |+.|.+.+++..+...   +..++.+.+......+........+ +++.+.++++... ...                 .
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (635)
T PRK11147        238 YDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRN-EGRVRALKALRRERSERREVMGTAKMQVEEASRSG  316 (635)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHhhhhhccccccCCceeEEeCCCCCCC
Confidence            9999887765432211   1111222111111111011111112 4455555544310 000                 0


Q ss_pred             eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCc
Q psy15138        173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR  249 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~  249 (320)
                      ..++++++++    ..|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+. .    ...+|+
T Consensus       317 ~~~l~~~~l~----~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~-G~~~p~~G~i~~~-~----~~~i~y  386 (635)
T PRK11147        317 KIVFEMENVN----YQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLML-GQLQADSGRIHCG-T----KLEVAY  386 (635)
T ss_pred             CceEEEeeeE----EEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEEC-C----CcEEEE
Confidence            1134444443    344445677777775   9999999999999999999999 9999999999873 1    123566


Q ss_pred             ceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        250 TSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ++|.......-.++.+++...... .....   ...++.++++.+++. +..++++..|||++.
T Consensus       387 ~~q~~~~l~~~~tv~e~l~~~~~~-~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek  446 (635)
T PRK11147        387 FDQHRAELDPEKTVMDNLAEGKQE-VMVNG---RPRHVLGYLQDFLFHPKRAMTPVKALSGGER  446 (635)
T ss_pred             EeCcccccCCCCCHHHHHHhhccc-ccccc---hHHHHHHHHHhcCCCHHHHhChhhhCCHHHH
Confidence            655432122112333443322111 00001   122345566666664 567889999999653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=5.8e-20  Score=186.20  Aligned_cols=244  Identities=18%  Similarity=0.165  Sum_probs=147.6

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT  113 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn  113 (320)
                      .+..+.+++||++|-. |.++++    |++|..+..|+++++.++..++.         ...|+++    .+++..|.|+
T Consensus       151 SgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~  230 (638)
T PRK10636        151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGN  230 (638)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCC
Confidence            3677889999999999 788888    99999999999999998865543         1445555    6677789999


Q ss_pred             hhHHHHHHHHHHHH---HHcCcccceecccccCCC-CCCCCCHHHHHHHHHHHHHHHHhcCC----c------------e
Q psy15138        114 EEQFDLLQKKIKSL---IDNGRGETIYDIGIGQDG-GENGLKPDEYEASVATLQSLATTLEA----D------------C  173 (320)
Q Consensus       114 yd~~~~l~~q~~~~---~~~~~~~~~~~ig~~~~~-~~~~l~~~~~~~~~~~l~~~~~~~~~----~------------~  173 (320)
                      |+.|...+.+....   ..+.+++.+.+......+ ...+.+..+.+++.+.+.+|......    .            .
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (638)
T PRK10636        231 YSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPN  310 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCC
Confidence            99998866543322   111111111111111111 11112234667777777665422110    0            0


Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT  250 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v  250 (320)
                      .+++++++    +..|+...++++++|.   |++++|+||||||||||+++|+ |.++|++|+|.+...     ..+|++
T Consensus       311 ~~l~~~~l----~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~-G~~~p~~G~i~~~~~-----~~igy~  380 (638)
T PRK10636        311 PLLKMEKV----SAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLA-GELAPVSGEIGLAKG-----IKLGYF  380 (638)
T ss_pred             ceEEEEee----EEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEECCC-----EEEEEe
Confidence            12334433    3344445677777775   9999999999999999999999 999999999987521     235555


Q ss_pred             eeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        251 SSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      +|.....  +.. ...+..... ......   ...++.++++.+++. +..++++..|||++.
T Consensus       381 ~Q~~~~~--l~~-~~~~~~~~~-~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGek  436 (638)
T PRK10636        381 AQHQLEF--LRA-DESPLQHLA-RLAPQE---LEQKLRDYLGGFGFQGDKVTEETRRFSGGEK  436 (638)
T ss_pred             cCcchhh--CCc-cchHHHHHH-HhCchh---hHHHHHHHHHHcCCChhHhcCchhhCCHHHH
Confidence            5532111  111 111100000 001111   123344566666765 467889999999653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=5.7e-20  Score=161.62  Aligned_cols=121  Identities=17%  Similarity=0.120  Sum_probs=88.1

Q ss_pred             eeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-hhhhhcCcceeeeccccCCcc
Q psy15138        187 GQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-KHEMESGRTSSVGNDILGFDS  262 (320)
Q Consensus       187 ~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-~~~~~~g~v~~~~~~~~~~~~  262 (320)
                      ..|+...+++++++.   ||+++|+||||||||||||+|+ |+.+|++|+|.+++... .....+++++|.+. .+.+.+
T Consensus        11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA-GL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~-LlPW~T   88 (248)
T COG1116          11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA-GLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA-LLPWLT   88 (248)
T ss_pred             EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCcccCCCCCCEEEEeccCc-ccchhh
Confidence            344446777877776   9999999999999999999999 99999999999986542 22223555555544 233456


Q ss_pred             ccceeecCCCCC-CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEHGS-LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~~~-~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+|+..+.... ....   +..+++.++++++|+.++.+++|++|||++.
T Consensus        89 v~~NV~l~l~~~~~~~~---e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMr  136 (248)
T COG1116          89 VLDNVALGLELRGKSKA---EARERAKELLELVGLAGFEDKYPHQLSGGMR  136 (248)
T ss_pred             HHhhheehhhccccchH---hHHHHHHHHHHHcCCcchhhcCccccChHHH
Confidence            777777765432 2222   2334677788888999999999999999754

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=6.1e-20  Score=163.19  Aligned_cols=89  Identities=26%  Similarity=0.299  Sum_probs=80.7

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHH
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQD   86 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~   86 (320)
                      |+...++.+|||||.+|+  ||+|+|++|.++|  ||+|++|+|||||||+.|++-.|+| +++++||+|+++ ++.+|.
T Consensus        72 t~~rhyahVDcPGHaDYvKNMItgAaqmDgAIL--VVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellel  149 (394)
T COG0050          72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLEL  149 (394)
T ss_pred             cCCceEEeccCCChHHHHHHHhhhHHhcCccEE--EEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHH
Confidence            456678999999999999  9999999999999  9999999999999999999999997 566779999986 888899


Q ss_pred             HHHHHHHhhcCCCcc
Q psy15138         87 TLKLLVRILKSPGCR  101 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~  101 (320)
                      +..+++++|...++.
T Consensus       150 VemEvreLLs~y~f~  164 (394)
T COG0050         150 VEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999998876555

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.80  E-value=5.1e-20  Score=171.30  Aligned_cols=132  Identities=19%  Similarity=0.116  Sum_probs=92.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v  250 (320)
                      .+++++++    +.|+...+++++++.   ||+++|+||||||||||||+|+ |+.+|++|+|.+++.+.. .......+
T Consensus         5 ~l~i~~v~----k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA-Gfe~p~~G~I~l~G~~i~~lpp~kR~i   79 (352)
T COG3842           5 ALEIRNVS----KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA-GFEQPSSGEILLDGEDITDVPPEKRPI   79 (352)
T ss_pred             eEEEEeee----eecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCChhhccc
Confidence            45566544    445566677777775   9999999999999999999999 999999999999876521 11223334


Q ss_pred             eeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+||++..|  .++.+|+.++..... .....+..+++.+++++++++++.+++|++|||++.
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~-~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQq  142 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRK-KLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQ  142 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcC-CCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHH
Confidence            4445554444  467788888765211 111122345566677788889999999999999764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.79  E-value=7.7e-20  Score=160.26  Aligned_cols=129  Identities=14%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhh
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEME  246 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~  246 (320)
                      ++++++++.|.    .+.+++++++.   |+.++++|||||||||+||+|+ ++++|++|+|++++.+.      ..+..
T Consensus         2 I~~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN-rLiept~G~I~i~g~~i~~~d~~~LRr~   76 (309)
T COG1125           2 IEFENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN-RLIEPTSGEILIDGEDISDLDPVELRRK   76 (309)
T ss_pred             ceeeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh-cccCCCCceEEECCeecccCCHHHHHHh
Confidence            45666666554    56777777775   9999999999999999999999 99999999999986552      23345


Q ss_pred             cCcceeeeccccCCccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCc--cccccccccccCCCCC
Q psy15138        247 SGRTSSVGNDILGFDSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHE--RYLKTTVFGMTGHVPD  313 (320)
Q Consensus       247 ~g~v~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~--~~~~~~~~~LSG~~~~  313 (320)
                      +||+-|....++.+ ++.+++.. +....+....+++   ++.++++++|+.  +|.+++|++|||++..
T Consensus        77 IGYviQqigLFPh~-Tv~eNIa~VP~L~~w~k~~i~~---r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQ  142 (309)
T COG1125          77 IGYVIQQIGLFPHL-TVAENIATVPKLLGWDKERIKK---RADELLDLVGLDPSEYADRYPHELSGGQQQ  142 (309)
T ss_pred             hhhhhhhcccCCCc-cHHHHHHhhhhhcCCCHHHHHH---HHHHHHHHhCCCHHHHhhcCchhcCcchhh
Confidence            67777655544433 44444443 3334445555444   455566667764  5999999999998754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.78  E-value=4e-20  Score=165.15  Aligned_cols=129  Identities=19%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hhhhcCcceeeec
Q psy15138        185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HEMESGRTSSVGN  255 (320)
Q Consensus       185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~~~~g~v~~~~~  255 (320)
                      ++.+|+.+.++++++|.   |++++|+||||||||||||+|+ |+++|.+|+|.+++.+..      .....++++|.+.
T Consensus         8 ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~-g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~   86 (258)
T COG1120           8 LSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA-GLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS   86 (258)
T ss_pred             EEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHh-ccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCC
Confidence            34455667788888876   9999999999999999999999 999999999999876521      2234556666554


Q ss_pred             cccCCccccceeecCCCCCCCHHh--HHHHHHHHHHHhcccCCccccccccccccCCCCCEE
Q psy15138        256 DILGFDSVGNVVNKPEHGSLDWVK--ICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFG  315 (320)
Q Consensus       256 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~  315 (320)
                      ...+ .++.+.+..+.....++..  .++..+.+.+.++.+|+.++.++.+.+|||++...+
T Consensus        87 ~~~~-~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv  147 (258)
T COG1120          87 APFG-LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV  147 (258)
T ss_pred             CCCC-cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence            3333 3667777777664433322  233344666778888889999999999999876544

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=2.2e-19  Score=161.55  Aligned_cols=132  Identities=14%  Similarity=0.071  Sum_probs=94.9

Q ss_pred             eeeeecCCCeeee-ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---------ch
Q psy15138        176 LRQRKLDNGLTGQ-YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---------HK  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~-~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---------~~  242 (320)
                      ++++++++.|... .....+++++++.   |++++|+|.||||||||+|+|+ ++..|++|+|.+++.+         ..
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN-~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEEcCEecccCChHHHHH
Confidence            4566666555442 2235678888876   9999999999999999999999 9999999999998643         11


Q ss_pred             hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        243 HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+.++|+++|.|..+. -.++.+++.++.. ...++.   +..+++.++++++|+.++.+++|.+|||++-
T Consensus        81 ~R~~IGMIFQhFnLLs-srTV~~NvA~PLeiag~~k~---ei~~RV~elLelVgL~dk~~~yP~qLSGGQK  147 (339)
T COG1135          81 LRQKIGMIFQHFNLLS-SRTVFENVAFPLELAGVPKA---EIKQRVAELLELVGLSDKADRYPAQLSGGQK  147 (339)
T ss_pred             HHhhccEEeccccccc-cchHHhhhhhhHhhcCCCHH---HHHHHHHHHHHHcCChhhhccCchhcCcchh
Confidence            2234566666554322 2466667766654 334444   3455666777788889999999999999764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.78  E-value=2.1e-19  Score=166.38  Aligned_cols=130  Identities=16%  Similarity=0.126  Sum_probs=92.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v  250 (320)
                      .++++++.+.    |+...+++++++.   |+.++|+||||||||||||+|+ |+.+|++|+|.+++.+-.. ....+.+
T Consensus         3 ~i~l~~v~K~----yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IA-GLe~~~~G~I~i~g~~vt~l~P~~R~i   77 (338)
T COG3839           3 ELELKNVRKS----FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA-GLEEPTSGEILIDGRDVTDLPPEKRGI   77 (338)
T ss_pred             EEEEeeeEEE----cCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCChhHCCE
Confidence            3455554444    4332266666665   9999999999999999999999 9999999999998765221 2223455


Q ss_pred             eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+||++..|  .++.+|+.++.. ...+..++.+++.++.+.   +++.++++++|.+|||++.
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~---L~l~~lL~r~P~~LSGGQr  139 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKL---LGLEHLLNRKPLQLSGGQR  139 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHH---cCChhHHhcCcccCChhhH
Confidence            6666666554  366777777654 445566666666655554   5558899999999999765

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=5.5e-20  Score=163.54  Aligned_cols=135  Identities=20%  Similarity=0.192  Sum_probs=96.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh---hhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH---EMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~---~~~~g  248 (320)
                      .+++++++..|    ....+++++++.   |+.++|+||||||||||+|+|. |+++|.+|+|.+.+.....   ..++|
T Consensus         4 ~i~v~nl~v~y----~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iL-Gll~p~~G~i~~~g~~~~~~~~~~~Ig   78 (254)
T COG1121           4 MIEVENLTVSY----GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL-GLLKPSSGEIKIFGKPVRKRRKRLRIG   78 (254)
T ss_pred             EEEEeeeEEEE----CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCcCCcceEEEccccccccccCCeEE
Confidence            45566555444    422477777775   9999999999999999999999 9999999999988654222   24577


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHh--HHHHHHHHHHHhcccCCccccccccccccCCCCCE
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVK--ICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDF  314 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~--~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~  314 (320)
                      |++|.....+.| .++.+.+..+.....++..  .++..+++.+.|+.+|+.++.++.+.+|||++...
T Consensus        79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QR  147 (254)
T COG1121          79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQR  147 (254)
T ss_pred             EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHH
Confidence            777765444445 4567777776554433321  12235667777888888999999999999976443

>PLN03073 ABC transporter F family; Provisional

Probab=99.75  E-value=9.4e-19  Score=178.65  Aligned_cols=245  Identities=14%  Similarity=0.097  Sum_probs=139.3

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT  113 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn  113 (320)
                      .+..+.+++||++|-. |.++++    |++|..+..|+.+++.++..++.         ...|+++    .+++..|.|+
T Consensus       346 SgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~  425 (718)
T PLN03073        346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD  425 (718)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence            4577889999999999 888888    99999999999999998855443         1345555    5677789999


Q ss_pred             hhHHHHHHHHHHHHH---HcCcccceecccccCCCCCCC-CCHHHHHHHHHHHHHHHHhc-------------C----Cc
Q psy15138        114 EEQFDLLQKKIKSLI---DNGRGETIYDIGIGQDGGENG-LKPDEYEASVATLQSLATTL-------------E----AD  172 (320)
Q Consensus       114 yd~~~~l~~q~~~~~---~~~~~~~~~~ig~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~-------------~----~~  172 (320)
                      |+.|...+.+...++   .+...+...++....++.... ......++..+.++++....             .    ..
T Consensus       426 ~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (718)
T PLN03073        426 YDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPG  505 (718)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCceeecCCCccCCC
Confidence            999987665432211   111111111111111000000 00112223333333322100             0    00


Q ss_pred             eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCc
Q psy15138        173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR  249 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~  249 (320)
                      ..+++++++++.|.   +...++++++|.   |++++|+|||||||||||++|+ |+++|++|+|.+...     ..+++
T Consensus       506 ~~~L~~~~ls~~y~---~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~-Gll~p~~G~I~~~~~-----~~igy  576 (718)
T PLN03073        506 PPIISFSDASFGYP---GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIS-GELQPSSGTVFRSAK-----VRMAV  576 (718)
T ss_pred             CceEEEEeeEEEeC---CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCceEEECCc-----eeEEE
Confidence            12455555544432   122356777765   9999999999999999999999 999999999987531     23555


Q ss_pred             ceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        250 TSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ++|.+.  ..+....+............  .   ..++.++++.+|+. +..++++..|||++.
T Consensus       577 v~Q~~~--~~l~~~~~~~~~~~~~~~~~--~---~~~i~~~L~~~gl~~~~~~~~~~~LSgGqk  633 (718)
T PLN03073        577 FSQHHV--DGLDLSSNPLLYMMRCFPGV--P---EQKLRAHLGSFGVTGNLALQPMYTLSGGQK  633 (718)
T ss_pred             Eecccc--ccCCcchhHHHHHHHhcCCC--C---HHHHHHHHHHCCCChHHhcCCccccCHHHH
Confidence            555321  11111111111100000000  0   12334556666666 467889999999654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.75  E-value=2e-18  Score=145.34  Aligned_cols=129  Identities=21%  Similarity=0.165  Sum_probs=95.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---------hh
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---------KH  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---------~~  243 (320)
                      ++++++++.|..+   ..++++++|.   ||.+-|+||||||||||+|+|. +...|++|+|++++.+.         ..
T Consensus         2 I~f~~V~k~Y~~g---~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~-~~e~pt~G~i~~~~~dl~~l~~~~iP~L   77 (223)
T COG2884           2 IRFENVSKAYPGG---REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIY-GEERPTRGKILVNGHDLSRLKGREIPFL   77 (223)
T ss_pred             eeehhhhhhcCCC---chhhhCceEeecCceEEEEECCCCCCHHHHHHHHH-hhhcCCCceEEECCeecccccccccchh
Confidence            5778888777655   4566777665   9999999999999999999999 99999999999986541         12


Q ss_pred             hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +..+|.++|++..... .++.+++.++.. ...+..+++   +++.+.++++|+.++.+..|.+|||++.
T Consensus        78 RR~IGvVFQD~rLL~~-~tvyeNVA~pL~v~G~~~~~i~---~rV~~~L~~VgL~~k~~~lP~~LSGGEQ  143 (223)
T COG2884          78 RRQIGVVFQDFRLLPD-RTVYENVALPLRVIGKPPREIR---RRVSEVLDLVGLKHKARALPSQLSGGEQ  143 (223)
T ss_pred             hheeeeEeeecccccc-chHhhhhhhhhhccCCCHHHHH---HHHHHHHHHhccchhhhcCccccCchHH
Confidence            3346666666664433 356677776654 344444444   4556677788889999999999999754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.75  E-value=7.4e-19  Score=154.11  Aligned_cols=132  Identities=17%  Similarity=0.075  Sum_probs=84.7

Q ss_pred             eeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------hhhhhc
Q psy15138        178 QRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------KHEMES  247 (320)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------~~~~~~  247 (320)
                      ++++.+.|..+.....+++++++.   ||.++|+|||||||||||++|. |+..|++|.+.+.+.+.       ....+.
T Consensus         4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig-~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~   82 (226)
T COG1136           4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG-GLDKPTSGEVLINGKDLTKLSEKELAKLRR   82 (226)
T ss_pred             EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence            344444343322235678888776   9999999999999999999999 99999999999886331       111233


Q ss_pred             CcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccc-cccccccCCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLK-TTVFGMTGHVPD  313 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~-~~~~~LSG~~~~  313 (320)
                      ..++++||.+..+  .++.+++..+.. ......   ....++.++++.+|+.+... ++|++|||++..
T Consensus        83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~---~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQ  149 (226)
T COG1136          83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG---RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ  149 (226)
T ss_pred             HhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh---HHHHHHHHHHHhcCChhhhccCCchhcCHHHHH
Confidence            4445555554332  345555554432 222221   23344555666677786666 899999997643

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.3e-18  Score=156.22  Aligned_cols=122  Identities=17%  Similarity=0.076  Sum_probs=82.6

Q ss_pred             cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc---c----chhhhhcCcceeeeccccC
Q psy15138        190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF---R----HKHEMESGRTSSVGNDILG  259 (320)
Q Consensus       190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~---~----~~~~~~~g~v~~~~~~~~~  259 (320)
                      +...+++++++.   |+.+|++||||||||||||+|+ |++.|++|.|.+++.   +    ..++.++|.++|.+.. +.
T Consensus        13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA-GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YAL-F~   90 (345)
T COG1118          13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA-GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYAL-FP   90 (345)
T ss_pred             ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHh-CcCCCCCceEEECCEeccchhccchhhcceeEEEechhh-cc
Confidence            334445555554   9999999999999999999999 999999999999865   3    2233345555554442 22


Q ss_pred             CccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        260 FDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       260 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      -.++.+++.++...........+...++.++++++.++...+++|.+|||++..
T Consensus        91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ  144 (345)
T COG1118          91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ  144 (345)
T ss_pred             cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH
Confidence            257788888876432111111223344445555666677888999999998753

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=5e-18  Score=157.97  Aligned_cols=90  Identities=27%  Similarity=0.356  Sum_probs=81.7

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCC-CcEEEEeCCCCC-
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSV-PVFVVVTKIDMC-   79 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~-   79 (320)
                      |....++|||+|||++|+  |++|++++|.++|  ||+|+.|       .++|||||+-||+.||| ..+|++||||+. 
T Consensus        82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVL--VV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~  159 (428)
T COG5256          82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVL--VVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS  159 (428)
T ss_pred             cCCceEEEeeCCchHHHHHHhhcchhhccEEEE--EEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc
Confidence            456779999999999999  9999999999999  9999988       89999999999999999 799999999985 


Q ss_pred             -ChhHHHHHHHHHHHhhcCCCccc
Q psy15138         80 -PPNVLQDTLKLLVRILKSPGCRK  102 (320)
Q Consensus        80 -~~~~le~~l~~~~~~l~~~~~~~  102 (320)
                       +++++++..+++..++++.+++.
T Consensus       160 wde~rf~ei~~~v~~l~k~~G~~~  183 (428)
T COG5256         160 WDEERFEEIVSEVSKLLKMVGYNP  183 (428)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCc
Confidence             78899999999999777777764

>KOG0460|consensus

Probab=99.72  E-value=7.1e-18  Score=152.69  Aligned_cols=89  Identities=26%  Similarity=0.294  Sum_probs=80.7

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCC-ChhHHHH
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMC-PPNVLQD   86 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-~~~~le~   86 (320)
                      |+....+=+|+|||.+|+  ||+|++++|-++|  ||+|++|+||||||||.||+-.|++ ++|.+||.|++ +++.+|.
T Consensus       114 Ta~RhYaH~DCPGHADYIKNMItGaaqMDGaIL--VVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leL  191 (449)
T KOG0460|consen  114 TAKRHYAHTDCPGHADYIKNMITGAAQMDGAIL--VVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLEL  191 (449)
T ss_pred             ccccccccCCCCchHHHHHHhhcCccccCceEE--EEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHH
Confidence            556667789999999999  9999999999999  9999999999999999999999996 56667999999 8999999


Q ss_pred             HHHHHHHhhcCCCcc
Q psy15138         87 TLKLLVRILKSPGCR  101 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~  101 (320)
                      +..++++.|..-+|+
T Consensus       192 VEmE~RElLse~gf~  206 (449)
T KOG0460|consen  192 VEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999998865555

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.71  E-value=7.8e-18  Score=139.59  Aligned_cols=134  Identities=17%  Similarity=0.145  Sum_probs=85.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-------chhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-------HKHE  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-------~~~~  244 (320)
                      ++++++.+..+........+++++++.   |+.++|||||||||||||.+++ |+.+|++|++++.+..       ....
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlA-GLd~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA-GLDDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHh-cCCCCCCceEEEcCcchhhcCHHHHHH
Confidence            444555544444434445566666664   9999999999999999999999 9999999999987543       1111


Q ss_pred             hhcCcceeeeccccCCc--cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        245 MESGRTSSVGNDILGFD--SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~~--~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+.+.+..+||.+...+  +..+++..+.. ..-+..+....+.   ++++.+|+.+++..+|.+|||+..
T Consensus        85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~---~lL~~vGLg~Rl~HyP~qLSGGEQ  152 (228)
T COG4181          85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGLGKRLTHYPAQLSGGEQ  152 (228)
T ss_pred             hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHH---HHHHHhCcccccccCccccCchHH
Confidence            23344455555544432  23344444432 2211222222333   455667889999999999999754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.71  E-value=2.5e-17  Score=164.71  Aligned_cols=245  Identities=12%  Similarity=0.055  Sum_probs=136.8

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT  113 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn  113 (320)
                      .+..+.+++||+++-. |.++++    |++|..+..|+.+.+.++..++.         ...|+++    .+++..+.|+
T Consensus       163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~  242 (552)
T TIGR03719       163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN  242 (552)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCC
Confidence            3677889999999999 778888    99999999999999888755433         1334444    5566678999


Q ss_pred             hhHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCC----------------cee
Q psy15138        114 EEQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEA----------------DCV  174 (320)
Q Consensus       114 yd~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~----------------~~~  174 (320)
                      |+.|.+.+....+.+.   +...+.+.+......... .......+...++++++.+....                ...
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (552)
T TIGR03719       243 YSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSP-KARQAKSKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDK  321 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhcccccCCCceeecCCCCCCCCe
Confidence            9998775543221111   000000000000000000 00011111222222221110000                012


Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS  251 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~  251 (320)
                      .+++++++    ..|+.+.+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+..     ...+++++
T Consensus       322 ~l~~~~l~----~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~-G~~~p~~G~i~~~~-----~~~i~~v~  391 (552)
T TIGR03719       322 VIEAENLS----KGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMIT-GQEQPDSGTIKIGE-----TVKLAYVD  391 (552)
T ss_pred             EEEEeeEE----EEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCeEEEECC-----ceEEEEEe
Confidence            34444433    334445577777776   9999999999999999999999 99999999998732     11355555


Q ss_pred             eeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138        252 SVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP  312 (320)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~  312 (320)
                      |.+.......++.+++..+.. ......  ...   ..++++.+|+.. ..++++..|||++.
T Consensus       392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~---~~~~l~~~~l~~~~~~~~~~~LSgGe~  449 (552)
T TIGR03719       392 QSRDALDPNKTVWEEISGGLDIIQLGKR--EVP---SRAYVGRFNFKGSDQQKKVGQLSGGER  449 (552)
T ss_pred             CCccccCCCCcHHHHHHhhccccccCcc--hHH---HHHHHHhCCCChhHhcCchhhCCHHHH
Confidence            543211211234444433221 111111  111   224555667653 57889999999653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.70  E-value=7.7e-17  Score=161.31  Aligned_cols=245  Identities=12%  Similarity=0.053  Sum_probs=137.2

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT  113 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn  113 (320)
                      .+..+.++.||+++-. |.++++    |.+|..+..|+.+.+.++..++.         ...|+++    .+++..|.|+
T Consensus       165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~  244 (556)
T PRK11819        165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN  244 (556)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCC
Confidence            3577889999999999 778887    99999999999999988765443         1334444    5566668999


Q ss_pred             hhHHHHHHHHHHHHH---HcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhc------------CC----cee
Q psy15138        114 EEQFDLLQKKIKSLI---DNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTL------------EA----DCV  174 (320)
Q Consensus       114 yd~~~~l~~q~~~~~---~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~------------~~----~~~  174 (320)
                      |+.|.+.+.....+.   .+...+.+.++.........+ .....+...++++++....            ..    ...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (556)
T PRK11819        245 YSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKA-RQAKSKARLARYEELLSEEYQKRNETNEIFIPPGPRLGDK  323 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhcccccccCCCceeecCCCCCCCCe
Confidence            999866544221110   000000010000000000000 0111222223332221100            00    012


Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS  251 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~  251 (320)
                      ++++++++.    .|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+..     ...+|+++
T Consensus       324 ~l~~~~l~~----~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~~p~~G~i~~~~-----~~~i~~v~  393 (556)
T PRK11819        324 VIEAENLSK----SFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMIT-GQEQPDSGTIKIGE-----TVKLAYVD  393 (556)
T ss_pred             EEEEEeEEE----EECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECC-----ceEEEEEe
Confidence            455555443    33445577777775   9999999999999999999999 99999999998742     12355555


Q ss_pred             eeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138        252 SVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP  312 (320)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~  312 (320)
                      |....+....++.+++..... ......  ...   ...+++.+|+.. ..++.+.+|||++.
T Consensus       394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~---~~~~l~~~~l~~~~~~~~~~~LSgG~~  451 (556)
T PRK11819        394 QSRDALDPNKTVWEEISGGLDIIKVGNR--EIP---SRAYVGRFNFKGGDQQKKVGVLSGGER  451 (556)
T ss_pred             CchhhcCCCCCHHHHHHhhccccccccc--HHH---HHHHHHhCCCChhHhcCchhhCCHHHH
Confidence            543111111234444433211 111111  111   223555666653 57889999999653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=1e-16  Score=159.61  Aligned_cols=244  Identities=15%  Similarity=0.115  Sum_probs=135.2

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc--C-------CCcccc----CccccccCCc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK--S-------PGCRKV----PVMNCLISPT  113 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~--~-------~~~~~i----~~kl~~~~gn  113 (320)
                      .+..+.+++||+++-. |.++++    |.+|..+..|+.+.+.+...++.  +       ..|+++    .+++..+.|+
T Consensus       157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~  236 (530)
T PRK15064        157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGN  236 (530)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCC
Confidence            3577789999999999 788888    99999999999998876433332  1       335544    4566568999


Q ss_pred             hhHHHHHHHHHHHHHHcCc---ccceecccccCCC-CCCCCCHHHHHHHHHHHHHHHH-hc-C----Cc-----------
Q psy15138        114 EEQFDLLQKKIKSLIDNGR---GETIYDIGIGQDG-GENGLKPDEYEASVATLQSLAT-TL-E----AD-----------  172 (320)
Q Consensus       114 yd~~~~l~~q~~~~~~~~~---~~~~~~ig~~~~~-~~~~l~~~~~~~~~~~l~~~~~-~~-~----~~-----------  172 (320)
                      |+.|.+.++....++.+..   .+.+.++.....+ ..............+++..+.. .. .    ..           
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (530)
T PRK15064        237 YDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLH  316 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCCCCCC
Confidence            9998765553322211100   0000000000000 0000011112222222222110 00 0    00           


Q ss_pred             eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCc
Q psy15138        173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR  249 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~  249 (320)
                      -..++++++++.    |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+...     ..+|+
T Consensus       317 ~~~l~~~~l~~~----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~~p~~G~i~~~~~-----~~i~~  386 (530)
T PRK15064        317 RNALEVENLTKG----FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLV-GELEPDSGTVKWSEN-----ANIGY  386 (530)
T ss_pred             CceEEEEeeEEe----eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCc-----eEEEE
Confidence            013455554433    3334567777775   9999999999999999999999 999999999987642     22455


Q ss_pred             ceeeecc-ccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        250 TSSVGND-ILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ++|.+.. +....+..+++...  .. .. .   ...++.++++.+|+. +..++++.+|||++.
T Consensus       387 ~~q~~~~~~~~~~t~~~~~~~~--~~-~~-~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  444 (530)
T PRK15064        387 YAQDHAYDFENDLTLFDWMSQW--RQ-EG-D---DEQAVRGTLGRLLFSQDDIKKSVKVLSGGEK  444 (530)
T ss_pred             EcccccccCCCCCcHHHHHHHh--cc-CC-c---cHHHHHHHHHHcCCChhHhcCcccccCHHHH
Confidence            5554321 11111233322211  00 00 1   112344556666663 678899999999653

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=2.7e-17  Score=146.31  Aligned_cols=133  Identities=23%  Similarity=0.251  Sum_probs=95.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HE  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~  244 (320)
                      .++++++.+.|..+   ..+++++++.   |++++|+||||||||||+++++ |+++|.+|.|.+++....       ..
T Consensus         3 ~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~-GLl~p~~G~v~~~g~~~~~~~~~~~~~   78 (235)
T COG1122           3 MIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN-GLLKPTSGEVLVDGLDTSSEKSLLELR   78 (235)
T ss_pred             eEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHc-CcCcCCCCEEEECCeeccchhhHHHhh
Confidence            34556655555443   3556666654   9999999999999999999999 999999999988764321       23


Q ss_pred             hhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCE
Q psy15138        245 MESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDF  314 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~  314 (320)
                      ...|+++|.+..++.-+++.+.+.++.. ...+..++.+++.   +.+..+|+.+++++.|+.|||++-..
T Consensus        79 ~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~---~~l~~vgl~~~~~r~p~~LSGGqkqR  146 (235)
T COG1122          79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA---EALELVGLEELLDRPPFNLSGGQKQR  146 (235)
T ss_pred             cceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH---HHHHHcCchhhccCCccccCCcceee
Confidence            3467778877776666777776766554 4555555544444   45556777888999999999976543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.5e-17  Score=145.46  Aligned_cols=134  Identities=18%  Similarity=0.217  Sum_probs=90.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----hhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----EMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~~~~  247 (320)
                      .+.+++.+..|........++++++|.   |++++|+|+||||||||.++|+ |+.+|++|+|.+++.....    ....
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~-Gl~~p~~G~I~~~G~~~~~~~~~~~~~   81 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLA-GLEKPSSGSILLDGKPLAPKKRAKAFY   81 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHh-cccCCCCceEEECCcccCccccchhhc
Confidence            355565555554433334588998886   9999999999999999999999 9999999999998754211    1234


Q ss_pred             CcceeeeccccC-C---ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCCCC
Q psy15138        248 GRTSSVGNDILG-F---DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       248 g~v~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~~~  313 (320)
                      +.+..+||++.. +   .+++..+..+.... +..   +...++.++++.+|+ ..+++++|++|||++..
T Consensus        82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~---~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~Q  148 (252)
T COG1124          82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLS---KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQ  148 (252)
T ss_pred             cceeEEecCCccccCcchhHHHHHhhhhccC-Ccc---HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHH
Confidence            556666666544 2   34444444443321 111   122335566677777 47899999999998653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.69  E-value=2.2e-17  Score=143.53  Aligned_cols=134  Identities=19%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---------ch
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---------HK  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---------~~  242 (320)
                      .+++++++..|.   +..++++++++.   ||.++|+||||||||||||+|+ |+.+|++|+|.+++.+         ..
T Consensus         3 ~i~~~nl~k~yp---~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~ln-gl~d~t~G~i~~~g~~i~~~~~k~lr~   78 (258)
T COG3638           3 MIEVKNLSKTYP---GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLN-GLVDPTSGEILFNGVQITKLKGKELRK   78 (258)
T ss_pred             eEEEeeeeeecC---CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHh-cccCCCcceEEecccchhccchHHHHH
Confidence            466666665554   445667777665   9999999999999999999999 9999999999988533         12


Q ss_pred             hhhhcCcceeeeccccCCccccceeecCCCCCCCHHh------HHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        243 HEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVK------ICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      ....+|+++|.+...... ++..++..+.....++..      -++....+++.|+.+|+.++.-+..++|||++..
T Consensus        79 ~r~~iGmIfQ~~nLv~r~-sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ  154 (258)
T COG3638          79 LRRDIGMIFQQFNLVPRL-SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ  154 (258)
T ss_pred             HHHhceeEeccCCccccc-HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence            233467777766544433 344455554443332211      1234566778888899999999999999997653

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.9e-16  Score=148.52  Aligned_cols=111  Identities=19%  Similarity=0.215  Sum_probs=94.9

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTL   88 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l   88 (320)
                      +++.++|||+|||+||+  |++|++.+|+++|  ||++|+|+++||.|||.++..++++ .++|+||+|.+++.++++..
T Consensus        48 ~d~~~~fIDvpgh~~~i~~miag~~~~d~alL--vV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i  125 (447)
T COG3276          48 EDGVMGFIDVPGHPDFISNLLAGLGGIDYALL--VVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKI  125 (447)
T ss_pred             CCCceEEeeCCCcHHHHHHHHhhhcCCceEEE--EEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHH
Confidence            45689999999999999  9999999999999  9999999999999999999999995 69999999999999999998


Q ss_pred             HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138         89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI  128 (320)
Q Consensus        89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~  128 (320)
                      +++...+.   +...+. +.....+.+.+++|+..+....
T Consensus       126 ~~Il~~l~---l~~~~i-~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         126 KQILADLS---LANAKI-FKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             HHHHhhcc---cccccc-cccccccCCCHHHHHHHHHHhh
Confidence            88887654   333332 3344577778999998887654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.67  E-value=1.1e-16  Score=139.63  Aligned_cols=131  Identities=20%  Similarity=0.115  Sum_probs=90.6

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hh
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HE  244 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~  244 (320)
                      .+++++++.    ..++.+.+++++++.   |+.++|+||||||||||||+|. |+++|++|+|++.+.+..      ..
T Consensus         7 ~~I~vr~v~----~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~-Gll~P~~GeI~i~G~~i~~ls~~~~~   81 (263)
T COG1127           7 PLIEVRGVT----KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL-GLLRPDKGEILIDGEDIPQLSEEELY   81 (263)
T ss_pred             ceEEEeeee----eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHh-ccCCCCCCeEEEcCcchhccCHHHHH
Confidence            356666554    445667778887776   9999999999999999999999 999999999999865511      11


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccc-cccccccccCCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERY-LKTTVFGMTGHVP  312 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~-~~~~~~~LSG~~~  312 (320)
                      ....+++..||.-..|  .++.+|+.++..  ..++...++   +-++..++++|+... .+.+|++|||+..
T Consensus        82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~---~lv~~KL~~VGL~~~~~~~~PsELSGGM~  151 (263)
T COG1127          82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR---ELVLMKLELVGLRGAAADLYPSELSGGMR  151 (263)
T ss_pred             HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHH---HHHHHHHHhcCCChhhhhhCchhhcchHH
Confidence            1122334444443333  456777777654  334444433   334556677888766 8999999999753

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.66  E-value=1e-16  Score=134.20  Aligned_cols=110  Identities=22%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhh-hcCcceeeeccccCC--ccccceeecCCCCCCCH
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEM-ESGRTSSVGNDILGF--DSVGNVVNKPEHGSLDW  277 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~-~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~  277 (320)
                      .|+++||+|||||||||||++|+ |++.|.+|+|++++.++.... ...-++..||+...|  .++..++..+....+..
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIA-GF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL  102 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIA-GFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL  102 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHH-hccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence            39999999999999999999999 999999999999977654322 234466777776555  45666776666544433


Q ss_pred             HhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        278 VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       278 ~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      ..  +..+++...+..+|+..+.++.|.+|||++..
T Consensus       103 ~a--~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQ  136 (231)
T COG3840         103 NA--EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQ  136 (231)
T ss_pred             CH--HHHHHHHHHHHHhChhhHhhhCccccCchHHH
Confidence            22  22344555566678899999999999998754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.64  E-value=7.4e-17  Score=141.16  Aligned_cols=126  Identities=17%  Similarity=0.174  Sum_probs=93.0

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----chhh---hhcCcceee
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----HKHE---MESGRTSSV  253 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----~~~~---~~~g~v~~~  253 (320)
                      ++++.|+...++++++|.   |++++|+||||||||||+++|+ |.++|++|+|.+.+.+    ..+.   .-+.+++|+
T Consensus         9 ~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit-G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~   87 (250)
T COG0411           9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT-GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI   87 (250)
T ss_pred             cceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec-ccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence            566778889999999997   9999999999999999999999 9999999999998664    2222   234667777


Q ss_pred             eccccCCccccceeecCCCC--------CC--CHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        254 GNDILGFDSVGNVVNKPEHG--------SL--DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       254 ~~~~~~~~~~~~~v~~~~~~--------~~--~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .+-+..+ ++.+++..+...        ..  ...+..+..+++.++++.+|+.++.+.....||+++
T Consensus        88 ~rlF~~l-TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~  154 (250)
T COG0411          88 TRLFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ  154 (250)
T ss_pred             ccccCCC-cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence            7655444 444454443221        11  112334456677788888888999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.62  E-value=3.1e-16  Score=141.48  Aligned_cols=115  Identities=19%  Similarity=0.190  Sum_probs=84.4

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-------chhhhhcCcceeeeccccCC--c
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-------HKHEMESGRTSSVGNDILGF--D  261 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-------~~~~~~~g~v~~~~~~~~~~--~  261 (320)
                      .+++.++.   |++++|+|-||||||||+|+|+ ++.+|++|+|.+++.+       ...+.++..++.+||.+-.+  .
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~N-rLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr  121 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN-RLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR  121 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHh-ccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence            34555554   9999999999999999999999 9999999999998654       12234455667777765444  3


Q ss_pred             cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.+++.++.. ...+..   ++.+++.+.++++|+..+.+++|++|||+..
T Consensus       122 tVl~Nv~fGLev~Gv~~~---er~~~a~~~l~~VgL~~~~~~yp~eLSGGMq  170 (386)
T COG4175         122 TVLENVAFGLEVQGVPKA---EREERALEALELVGLEGYADKYPNELSGGMQ  170 (386)
T ss_pred             hHhhhhhcceeecCCCHH---HHHHHHHHHHHHcCchhhhhcCcccccchHH
Confidence            44555555443 344443   4556666777788889999999999999754

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.62  E-value=1.7e-16  Score=149.20  Aligned_cols=133  Identities=13%  Similarity=0.044  Sum_probs=87.3

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhh
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EME  246 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~  246 (320)
                      ++++++++.|........++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+...      ...
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~-gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            45566555553111123577777775   9999999999999999999999 9999999999998654211      111


Q ss_pred             cCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        247 SGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ...++.++|+...+  .++.+++.++.. ......+   ..+++.++++.+|+.++.+++|.+|||++.
T Consensus        81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~---~~~~v~e~l~~vgL~~~~~~~~~~LSgGqk  146 (343)
T TIGR02314        81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE---IKRKVTELLALVGLGDKHDSYPSNLSGGQK  146 (343)
T ss_pred             hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            33455555554333  345555554332 1222222   234455677778888899999999999653

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.62  E-value=4.1e-16  Score=131.99  Aligned_cols=122  Identities=19%  Similarity=0.193  Sum_probs=87.3

Q ss_pred             eeeeccee--ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-hhhhhcCcceeeeccccC
Q psy15138        186 TGQYLLRK--RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-KHEMESGRTSSVGNDILG  259 (320)
Q Consensus       186 ~~~~~~~~--~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-~~~~~~g~v~~~~~~~~~  259 (320)
                      ..+|+.+.  +++++++.   |+.++++|||||||||||++++ |+.+|..|+|.+++.+. .....+|.++|....+. 
T Consensus        10 sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A-Gf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlP-   87 (259)
T COG4525          10 SLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA-GFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLP-   87 (259)
T ss_pred             EEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHh-cCcCcccceEEECCEeccCCCccceeEeccCccch-
Confidence            34444333  67777665   9999999999999999999999 99999999999986542 22345677777655433 


Q ss_pred             CccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        260 FDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       260 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+.-+|+.++.. ..+.+..   +.+.+.+++.++|+.++.++++-+|||++.
T Consensus        88 Wl~~~dNvafgL~l~Gi~k~~---R~~~a~q~l~~VgL~~~~~~~i~qLSGGmr  138 (259)
T COG4525          88 WLNVIDNVAFGLQLRGIEKAQ---RREIAHQMLALVGLEGAEHKYIWQLSGGMR  138 (259)
T ss_pred             hhHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHhCcccccccceEeecchHH
Confidence            3345556655543 4444443   445555677778888888999999999764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.61  E-value=1.4e-15  Score=147.72  Aligned_cols=140  Identities=23%  Similarity=0.218  Sum_probs=93.2

Q ss_pred             eeeeeeeecCCCeeee-------ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc--
Q psy15138        173 CVLLRQRKLDNGLTGQ-------YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR--  240 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~--  240 (320)
                      ..+++++++...|...       ....+++++++|.   ||+++|||+||||||||.|+|+ |+++|++|.+.+.+.+  
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~-gL~~P~~G~i~~~g~~~~  356 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA-GLLPPSSGSIIFDGQDLD  356 (539)
T ss_pred             CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEEeCcccc
Confidence            3566777776666531       1245778999887   9999999999999999999999 9999999999997654  


Q ss_pred             ---chhhhhcCcceeeeccccC-C---ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138        241 ---HKHEMESGRTSSVGNDILG-F---DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP  312 (320)
Q Consensus       241 ---~~~~~~~g~v~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~  312 (320)
                         .........+..+||++.. +   .++++.+..+........ ..+..+++.++++++|+.. +++++|++|||++.
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~-~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr  435 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS-GAERRARVAELLELVGLPPEFLDRYPHELSGGQR  435 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc-hHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence               1111123344555665543 2   234444444332111111 2233445667777777765 89999999999875


Q ss_pred             CE
Q psy15138        313 DF  314 (320)
Q Consensus       313 ~~  314 (320)
                      ..
T Consensus       436 QR  437 (539)
T COG1123         436 QR  437 (539)
T ss_pred             HH
Confidence            43

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.61  E-value=9.5e-16  Score=148.87  Aligned_cols=110  Identities=18%  Similarity=0.177  Sum_probs=89.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-CchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-IVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ..++|||+|||++|+  |++|++++|.+++  ||+|++| +++||+||+.++.+++++ .++++||+|+++.+|+++..+
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alL--VVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALL--LIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEE--EEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHH
Confidence            468999999999999  9999999999999  9999997 799999999999999995 788999999999999999889


Q ss_pred             HHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138         90 LLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~  127 (320)
                      ++++.+........  .+. .+.-+.+..+.|++.+...
T Consensus       195 ei~~~l~~~~~~~~--~iipVSA~~G~nI~~Ll~~L~~~  231 (460)
T PTZ00327        195 EIRNFVKGTIADNA--PIIPISAQLKYNIDVVLEYICTQ  231 (460)
T ss_pred             HHHHHHHhhccCCC--eEEEeeCCCCCCHHHHHHHHHhh
Confidence            99887654222221  222 2335556677777776643

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.61  E-value=2.4e-15  Score=149.49  Aligned_cols=220  Identities=14%  Similarity=0.128  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh----hc--C-------CCcccc----Ccccccc
Q psy15138         53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI----LK--S-------PGCRKV----PVMNCLI  110 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~----l~--~-------~~~~~i----~~kl~~~  110 (320)
                      +..+.+++||+++-. |.++++    |.+|..+..|+.+.+.++.+.    +.  +       ..|+++    .+++ .+
T Consensus       171 gGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i-~~  249 (520)
T TIGR03269       171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI-KE  249 (520)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEE-ee
Confidence            567789999999999 788888    999999999998888887432    11  1       233433    2333 23


Q ss_pred             CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeee-ee
Q psy15138        111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTG-QY  189 (320)
Q Consensus       111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~  189 (320)
                      .|+++.+.+..   ....    .    .+                       ... ........++++++++..|.. ..
T Consensus       250 ~g~~~~~~~~~---~~~~----~----~~-----------------------~~~-~~~~~~~~~l~~~~l~~~~~~~~~  294 (520)
T TIGR03269       250 EGTPDEVVAVF---MEGV----S----EV-----------------------EKE-CEVEVGEPIIKVRNVSKRYISVDR  294 (520)
T ss_pred             ecCHHHHHHHH---Hhhc----h----hh-----------------------ccc-cccCCCCceEEEeccEEEeccCCC
Confidence            46666543210   0000    0    00                       000 000011235777777665531 00


Q ss_pred             cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec-ccc------ch---hhhhcCcceeeecc
Q psy15138        190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK-LFR------HK---HEMESGRTSSVGND  256 (320)
Q Consensus       190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~-~~~------~~---~~~~~g~v~~~~~~  256 (320)
                      +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.++ +..      ..   .......++.++|.
T Consensus       295 ~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~  373 (520)
T TIGR03269       295 GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIA-GVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE  373 (520)
T ss_pred             CCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence            123467777765   9999999999999999999999 9999999999984 321      00   00111224444444


Q ss_pred             ccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcc-----ccccccccccCCCC
Q psy15138        257 ILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHER-----YLKTTVFGMTGHVP  312 (320)
Q Consensus       257 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~-----~~~~~~~~LSG~~~  312 (320)
                      ...+  .++.+++.............   ..++.++++.+|+.+     +.++++.+|||++.
T Consensus       374 ~~l~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~  433 (520)
T TIGR03269       374 YDLYPHRTVLDNLTEAIGLELPDELA---RMKAVITLKMVGFDEEKAEEILDKYPDELSEGER  433 (520)
T ss_pred             cccCCCCcHHHHHHHHHHcCCCHHHH---HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence            3222  23444443211111111111   233445555566643     67899999999654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=6.4e-16  Score=145.91  Aligned_cols=130  Identities=14%  Similarity=0.128  Sum_probs=86.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v  250 (320)
                      .++++++++.|    +...+++++++.   |++++|+|||||||||||++|+ |+++|++|+|.+++..... ......+
T Consensus         6 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~i   80 (351)
T PRK11432          6 FVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVA-GLEKPTEGQIFIDGEDVTHRSIQQRDI   80 (351)
T ss_pred             EEEEEeEEEEE----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCE
Confidence            56666655444    334567777765   9999999999999999999999 9999999999998654211 1112344


Q ss_pred             eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.++|++..|  .++.+++.++.. ......+.   .+++.++++++|+.++.+++|.+|||++.
T Consensus        81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~---~~~v~~~l~~~gl~~~~~r~~~~LSgGq~  142 (351)
T PRK11432         81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEER---KQRVKEALELVDLAGFEDRYVDQISGGQQ  142 (351)
T ss_pred             EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHH---HHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            5555554444  355666665432 22233332   34455666667778888999999999653

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.60  E-value=8.9e-16  Score=146.01  Aligned_cols=131  Identities=14%  Similarity=0.124  Sum_probs=86.5

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGR  249 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~  249 (320)
                      ..++++++.+.|    +...+++++++.   |++++|+|||||||||||++|+ |+++|++|+|.+++.+.. .......
T Consensus        13 ~~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~   87 (375)
T PRK09452         13 PLVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA-GFETPDSGRIMLDGQDITHVPAENRH   87 (375)
T ss_pred             ceEEEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHCC
Confidence            456777665544    334566666665   9999999999999999999999 999999999999865421 1111223


Q ss_pred             ceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+++|+...|  .++.+++.++.. ......+   ...++.++++++|+.++.+++|.+|||++.
T Consensus        88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~  150 (375)
T PRK09452         88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE---ITPRVMEALRMVQLEEFAQRKPHQLSGGQQ  150 (375)
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            44445544333  355666655432 1222222   233455666677778899999999999654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.60  E-value=5.8e-16  Score=146.34  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v  250 (320)
                      .++++++++.|    +...++++++|.   |++++|+|||||||||||++|+ |+++|++|+|.+++..... ......+
T Consensus         4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~~~~~~~~~r~i   78 (353)
T TIGR03265         4 YLSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA-GLERQTAGTIYQGGRDITRLPPQKRDY   78 (353)
T ss_pred             EEEEEEEEEEe----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCE
Confidence            35566554444    334566776665   9999999999999999999999 9999999999998654211 1112345


Q ss_pred             eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.++|++..|  .++.+++.++.. ......+.   ..++.++++.+|+.++.+++|.+|||++.
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~---~~~~~~~l~~l~L~~~~~~~~~~LSgGq~  140 (353)
T TIGR03265        79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV---AERVAELLDLVGLPGSERKYPGQLSGGQQ  140 (353)
T ss_pred             EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCCchhhCChhhCCHHHH
Confidence            5556655444  355666655432 12223332   33455666677778899999999999653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>KOG0458|consensus

Probab=99.60  E-value=1.3e-15  Score=146.68  Aligned_cols=100  Identities=25%  Similarity=0.305  Sum_probs=86.2

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCC-CcEEEEeCCCCC-
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSV-PVFVVVTKIDMC-   79 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~-   79 (320)
                      |....++++|+|||.+|+  |++|++++|+++|  ||+++.|.       .+|||||+.|++.||| ..+|++||||++ 
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avL--vvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVL--VVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS  329 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEE--EEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence            456779999999999999  9999999999999  99998554       4799999999999999 799999999995 


Q ss_pred             -ChhHHHHHHHHHHHhh-cCCCccccCccccccCC
Q psy15138         80 -PPNVLQDTLKLLVRIL-KSPGCRKVPVMNCLISP  112 (320)
Q Consensus        80 -~~~~le~~l~~~~~~l-~~~~~~~i~~kl~~~~g  112 (320)
                       +.++++++.+.+..+| ++.++..-..+++..+|
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSG  364 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISG  364 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEeccc
Confidence             8999999999999999 56666665555555553

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=6.5e-16  Score=146.18  Aligned_cols=130  Identities=16%  Similarity=0.093  Sum_probs=85.9

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS  251 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~  251 (320)
                      ++++++++.|.   +...+++++++.   |++++|+|||||||||||++|+ |+++|++|+|.+++.+... ......++
T Consensus         4 l~i~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~ig   79 (356)
T PRK11650          4 LKLQAVRKSYD---GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA-GLERITSGEIWIGGRVVNELEPADRDIA   79 (356)
T ss_pred             EEEEeEEEEeC---CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCEE
Confidence            45555544441   234566777765   9999999999999999999999 9999999999998654211 11123445


Q ss_pred             eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++|+...|  .++.+++.++.. ......+.   ..++.++++.+|+.++.+++|.+|||++.
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LSgGq~  140 (356)
T PRK11650         80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEI---EERVAEAARILELEPLLDRKPRELSGGQR  140 (356)
T ss_pred             EEeCCccccCCCCHHHHHHhHHhhcCCCHHHH---HHHHHHHHHHcCChhHhhCChhhCCHHHH
Confidence            555554443  355666655432 12222222   23455666677778899999999999654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.59  E-value=1.4e-15  Score=130.35  Aligned_cols=123  Identities=18%  Similarity=0.128  Sum_probs=83.2

Q ss_pred             eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeec
Q psy15138        185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGN  255 (320)
Q Consensus       185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~  255 (320)
                      ++.....++.++++++.   ||.++|+||||||||||||.|+ |.+.|++|++.+++...      .....++...|...
T Consensus         7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~Ls-Gel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~   85 (259)
T COG4559           7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALS-GELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSS   85 (259)
T ss_pred             eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhh-CccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcc
Confidence            34445677888888886   9999999999999999999999 99999999999985441      11234566666655


Q ss_pred             cccCCccccceeecCCCCCCC-HH--hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        256 DILGFDSVGNVVNKPEHGSLD-WV--KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       256 ~~~~~~~~~~~v~~~~~~~~~-~~--~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .-+.| ++.+++..+...... ..  +..+..+++   +...++..+..+....|||+..
T Consensus        86 laFpF-tv~eVV~mGr~p~~~g~~~~e~~~i~~~a---la~~d~~~la~R~y~~LSGGEq  141 (259)
T COG4559          86 LAFPF-TVQEVVQMGRIPHRSGREPEEDERIAAQA---LAATDLSGLAGRDYRTLSGGEQ  141 (259)
T ss_pred             cccce-EHHHHHHhcccccccCCCchhhHHHHHHH---HHHcChhhhhccchhhcCchHH
Confidence            44444 345566555442211 11  222223444   4455557777788899999753

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.57  E-value=1.4e-15  Score=141.22  Aligned_cols=128  Identities=16%  Similarity=0.062  Sum_probs=81.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME  246 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~  246 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|++++++.+..     ....
T Consensus         7 ~i~i~~l~k~~----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~-Gl~~p~~G~v~i~G~~~~~~~~~~~~~   81 (306)
T PRK13537          7 PIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLL-GLTHPDAGSISLCGEPVPSRARHARQR   81 (306)
T ss_pred             eEEEEeEEEEE----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEecccchHHHHhc
Confidence            45666554444    445678888876   9999999999999999999999 999999999999865421     1123


Q ss_pred             cCcceeeeccccCCccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        247 SGRTSSVGNDILGFDSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       247 ~g~v~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +|+++|.+..+.. .++.+++.+ .........+..+   ++.++++.+++.+..++.+.+|||++
T Consensus        82 ig~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS~G~  143 (306)
T PRK13537         82 VGVVPQFDNLDPD-FTVRENLLVFGRYFGLSAAAARA---LVPPLLEFAKLENKADAKVGELSGGM  143 (306)
T ss_pred             EEEEeccCcCCCC-CcHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCchHhcCchhhCCHHH
Confidence            4444444332211 244444432 2111222222222   33455556677888899999999964

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.57  E-value=1.6e-15  Score=143.63  Aligned_cols=130  Identities=15%  Similarity=0.116  Sum_probs=85.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC--ceeeeccccchh-hhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR--GHARQKLFRHKH-EMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~--G~i~~~~~~~~~-~~~~g  248 (320)
                      .++++++++.|    +...+++++++.   |++++|+|||||||||||++|+ |+++|++  |+|.+++.+... .....
T Consensus         5 ~l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~p~~~~G~i~~~g~~~~~~~~~~r   79 (362)
T TIGR03258         5 GIRIDHLRVAY----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIA-GFVKAAGLTGRIAIADRDLTHAPPHKR   79 (362)
T ss_pred             EEEEEEEEEEE----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCCEEEEECCEECCCCCHHHC
Confidence            45556554444    334567777765   9999999999999999999999 9999999  999988654211 11122


Q ss_pred             cceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.++|+...|  .++.+++.++.. ......+.   ..++.++++.+|+.++.+++|.+|||++.
T Consensus        80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~---~~~v~~~l~~~gL~~~~~~~~~~LSgGq~  143 (362)
T TIGR03258        80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADI---AERVADALKLVGLGDAAAHLPAQLSGGMQ  143 (362)
T ss_pred             CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHH---HHHHHHHHHhcCCCchhhCChhhCCHHHH
Confidence            344445544333  355666655432 22233232   23455666677778889999999999653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.57  E-value=2.3e-15  Score=131.72  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=73.9

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccc---cCCccccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDI---LGFDSVGN  265 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~---~~~~~~~~  265 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++...........++.++|+.   +...+..+
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e   91 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILA-GLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE   91 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence            4567777765   9999999999999999999999 999999999998764421111122344444442   11124444


Q ss_pred             eeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        266 VVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++....... .  .   ...++.++++.+|+.++.++.+..|||++.
T Consensus        92 ~l~~~~~~~-~--~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  132 (205)
T cd03226          92 ELLLGLKEL-D--A---GNEQAETVLKDLDLYALKERHPLSLSGGQK  132 (205)
T ss_pred             HHhhhhhhc-C--c---cHHHHHHHHHHcCCchhcCCCchhCCHHHH
Confidence            443321111 1  0   112344566667778888999999999653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0463|consensus

Probab=99.57  E-value=4.2e-15  Score=136.35  Aligned_cols=99  Identities=58%  Similarity=0.900  Sum_probs=88.9

Q ss_pred             cccccccCCCCCceEEEeCCCcchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCC
Q psy15138          3 SIVDQTPCTAENAASVFETRIHERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKID   77 (320)
Q Consensus         3 ~~~~~~~~~~~~~~~~~d~pgh~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~D   77 (320)
                      .|+-|-.- +-..|+|||..|||+|.     .++ .-.||+.||  .|+|+.|+.++|+|||.||.+|.+|+++|+||+|
T Consensus       209 dWvkIce~-saKviTFIDLAGHEkYLKTTvFGMT-GH~PDf~ML--MiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKID  284 (641)
T KOG0463|consen  209 DWVKICED-SAKVITFIDLAGHEKYLKTTVFGMT-GHMPDFTML--MIGANAGIIGMTKEHLGLALALHVPVFVVVTKID  284 (641)
T ss_pred             cceeeccc-cceeEEEEeccchhhhhheeeeccc-cCCCCceEE--EecccccceeccHHhhhhhhhhcCcEEEEEEeec
Confidence            47777444 34569999999999999     444 567999999  9999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhcCCCccccCc
Q psy15138         78 MCPPNVLQDTLKLLVRILKSPGCRKVPV  105 (320)
Q Consensus        78 l~~~~~le~~l~~~~~~l~~~~~~~i~~  105 (320)
                      +++..-|++.++-+.+.+++++|.++|.
T Consensus       285 MCPANiLqEtmKll~rllkS~gcrK~Pv  312 (641)
T KOG0463|consen  285 MCPANILQETMKLLTRLLKSPGCRKLPV  312 (641)
T ss_pred             cCcHHHHHHHHHHHHHHhcCCCcccCcE
Confidence            9999999999999999999999998854

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.56  E-value=8.6e-16  Score=130.24  Aligned_cols=128  Identities=14%  Similarity=0.100  Sum_probs=83.2

Q ss_pred             eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeecccc-
Q psy15138        186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDIL-  258 (320)
Q Consensus       186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~-  258 (320)
                      ++.|+...++++++..   |..++|+|||||||||||.+++ ++++.++|++.+++.+..   .......++-.-|+.. 
T Consensus         8 ~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i   86 (252)
T COG4604           8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI   86 (252)
T ss_pred             hHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-HhccccCceEEEeeeecccCChHHHHHHHHHHHhhchh
Confidence            3445667777877765   9999999999999999999999 999999999999865411   1111111122222211 


Q ss_pred             -CCccccceeecCCCCCC---CHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEE
Q psy15138        259 -GFDSVGNVVNKPEHGSL---DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGML  317 (320)
Q Consensus       259 -~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l  317 (320)
                       .-.++.+.+.++.+...   ...+......+.++++++   .+..++++.+|||++...+.+
T Consensus        87 ~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L---~~l~dryLd~LSGGQrQRAfI  146 (252)
T COG4604          87 NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL---EDLSDRYLDELSGGQRQRAFI  146 (252)
T ss_pred             hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcc---cchHHHhHHhcccchhhhhhh
Confidence             11356677777655322   222333344555555555   777889999999988766644

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.56  E-value=2.6e-15  Score=134.21  Aligned_cols=121  Identities=19%  Similarity=0.102  Sum_probs=76.7

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeecccc
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDIL  258 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~~  258 (320)
                      .|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...      ......++.++|...
T Consensus         9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~   87 (235)
T cd03261           9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV-GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA   87 (235)
T ss_pred             EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence            34344567777775   9999999999999999999999 9999999999987543110      111223444444432


Q ss_pred             CC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        259 GF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+  .++.+++.....  ........   ..++.++++.+|+.+..++.+.+|||++.
T Consensus        88 ~~~~~tv~~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  142 (235)
T cd03261          88 LFDSLTVFENVAFPLREHTRLSEEEI---REIVLEKLEAVGLRGAEDLYPAELSGGMK  142 (235)
T ss_pred             cCCCCcHHHHHHHHHhhccCCCHHHH---HHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            22  244444433211  11222222   23344556666777788999999999654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.56  E-value=3.4e-15  Score=128.15  Aligned_cols=129  Identities=18%  Similarity=0.062  Sum_probs=86.9

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC-----ceeeeccccch-----hhhhcCcc
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR-----GHARQKLFRHK-----HEMESGRT  250 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~-----G~i~~~~~~~~-----~~~~~g~v  250 (320)
                      ++...|+..++++++++.   +.++|++||||||||||||+++ .+.+...     |+|.+++.+..     ....+.++
T Consensus        12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v   90 (253)
T COG1117          12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV   90 (253)
T ss_pred             ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence            445556777888888775   9999999999999999999999 8887765     88888755411     11123455


Q ss_pred             eeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCCC
Q psy15138        251 SSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       251 ~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~~  313 (320)
                      +.+||.+..| .+..+++.++.. .........+.+++.++...+- ..++++++.+.+|||++..
T Consensus        91 GMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQ  156 (253)
T COG1117          91 GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQ  156 (253)
T ss_pred             eeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHH
Confidence            5666665555 466777777654 2222234444455555444332 2367899999999997754

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.56  E-value=1.9e-15  Score=144.68  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=83.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h---hh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H---EM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~---~~  245 (320)
                      +++++++++.    |+...++++++|.   |++++|+||||||||||+|+|+ |+++|.+|+|.+++.+..   .   ..
T Consensus         3 ~L~~~nls~~----y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~La-Gll~p~sG~I~l~G~~i~~~~~~~~~~   77 (402)
T PRK09536          3 MIDVSDLSVE----FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAIN-GTLTPTAGTVLVAGDDVEALSARAASR   77 (402)
T ss_pred             eEEEeeEEEE----ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh-cCCCCCCcEEEECCEEcCcCCHHHHhc
Confidence            3556655444    4445677777775   9999999999999999999999 999999999999865421   1   11


Q ss_pred             hcCcceeeeccccCCccccceeecCCCC---CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        246 ESGRTSSVGNDILGFDSVGNVVNKPEHG---SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+++++|....++. .++.+++..+...   ...... .+..+++.++++.+|+.++.++++.+|||++.
T Consensus        78 ~ig~v~q~~~l~~~-~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~~~LSgGer  145 (402)
T PRK09536         78 RVASVPQDTSLSFE-FDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPVTSLSGGER  145 (402)
T ss_pred             ceEEEccCCCCCCC-CCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            23444443332222 2444455443221   111001 11223455666677778888999999999654

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.56  E-value=3.1e-15  Score=141.37  Aligned_cols=120  Identities=16%  Similarity=0.115  Sum_probs=80.1

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS  262 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~  262 (320)
                      |+...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...|  .+
T Consensus        12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~t   90 (353)
T PRK10851         12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA-GLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT   90 (353)
T ss_pred             eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCc
Confidence            3334567777775   9999999999999999999999 9999999999997654211 11122344555554333  35


Q ss_pred             ccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+++.++...     .....+   ..+++.++++.+++.++.+++|.+|||++.
T Consensus        91 v~eni~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~  142 (353)
T PRK10851         91 VFDNIAFGLTVLPRRERPNAAA---IKAKVTQLLEMVQLAHLADRYPAQLSGGQK  142 (353)
T ss_pred             HHHHHHhhhhhcccccCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            55666554321     112222   233455666677778889999999999653

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.56  E-value=3.7e-14  Score=128.67  Aligned_cols=177  Identities=20%  Similarity=0.260  Sum_probs=116.7

Q ss_pred             CCCccchhhhccceecCCCCch--hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccc
Q psy15138         32 EASPADHSMLQSKVGANAGIVG--MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCL  109 (320)
Q Consensus        32 ~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~  109 (320)
                      .+++.|.+++  |+++.+|...  +..++|.+|.+.+|.++|+|||+||.+.+..+.  +++...     +..+.|.+..
T Consensus        76 ~v~n~d~~ii--Ivs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~-----y~~~gy~v~~  146 (301)
T COG1162          76 PVANNDQAII--VVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELLRE-----YEDIGYPVLF  146 (301)
T ss_pred             cccccceEEE--EEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHHHH-----HHhCCeeEEE
Confidence            3788999988  9999887764  666799999999999999999999998766653  333333     2234444333


Q ss_pred             cC-CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeee
Q psy15138        110 IS-PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQ  188 (320)
Q Consensus       110 ~~-gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      .+ .|.+.+++++..                                                                 
T Consensus       147 ~s~~~~~~~~~l~~~-----------------------------------------------------------------  161 (301)
T COG1162         147 VSAKNGDGLEELAEL-----------------------------------------------------------------  161 (301)
T ss_pred             ecCcCcccHHHHHHH-----------------------------------------------------------------
Confidence            33 444444433222                                                                 


Q ss_pred             ecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceee
Q psy15138        189 YLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVN  268 (320)
Q Consensus       189 ~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~  268 (320)
                                 +.|.+.+++|+||.|||||+|.|. +......|+|+-...       +|+.......++.|+..+.++.
T Consensus       162 -----------l~~~~svl~GqSGVGKSSLiN~L~-p~~~~~t~eIS~~~~-------rGkHTTt~~~l~~l~~gG~iiD  222 (301)
T COG1162         162 -----------LAGKITVLLGQSGVGKSTLINALL-PELNQKTGEISEKLG-------RGRHTTTHVELFPLPGGGWIID  222 (301)
T ss_pred             -----------hcCCeEEEECCCCCcHHHHHHhhC-chhhhhhhhhcccCC-------CCCCccceEEEEEcCCCCEEEe
Confidence                       124457999999999999999999 887777888876543       4555666666666777788888


Q ss_pred             cCCCCCCCH--HhHHHHHHHHHHHhcccCCccccc
Q psy15138        269 KPEHGSLDW--VKICERSAKVITFIDLAGHERYLK  301 (320)
Q Consensus       269 ~~~~~~~~~--~~~~~~~~~~l~~l~l~gl~~~~~  301 (320)
                      .+....+..  ....+......++-++.+.+++++
T Consensus       223 TPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~  257 (301)
T COG1162         223 TPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRD  257 (301)
T ss_pred             CCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCC
Confidence            877654433  222223333444445555455443

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.56  E-value=1.4e-15  Score=143.85  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=80.8

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-h---hhcCcceeeeccccCC
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-E---MESGRTSSVGNDILGF  260 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~---~~~g~v~~~~~~~~~~  260 (320)
                      ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   . .   .+...+++++|....|
T Consensus         5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~-Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~   83 (363)
T TIGR01186         5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF   83 (363)
T ss_pred             CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHh-CCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence            34466666665   9999999999999999999999 999999999999865421   1 0   1133455556654444


Q ss_pred             --ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 --DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 --~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                        .++.+++.+... ......   +..+++.++++.+|+..+.+++|.+|||++.
T Consensus        84 ~~~TV~eNi~~~~~~~~~~~~---~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~  135 (363)
T TIGR01186        84 PHMTILQNTSLGPELLGWPEQ---ERKEKALELLKLVGLEEYEHRYPDELSGGMQ  135 (363)
T ss_pred             CCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHHHhcCCchhhhCChhhCCHHHH
Confidence              355555554321 122222   2334556667778888899999999999764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.56  E-value=2.5e-15  Score=138.66  Aligned_cols=123  Identities=19%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             Ceeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcceeee
Q psy15138        184 GLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVG  254 (320)
Q Consensus       184 ~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~  254 (320)
                      ++++.|+ ...++++++|.   |+.+||+||||||||||+|+|+ |++.|++|+|.+.+.+...     ...+|++++.+
T Consensus         9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~-gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~   87 (293)
T COG1131           9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILA-GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEP   87 (293)
T ss_pred             ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEEcCEeCccCHHHHHhheEEEccCC
Confidence            5566777 58889999886   9999999999999999999999 9999999999998654221     12345555544


Q ss_pred             ccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        255 NDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       255 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .. +...++.+++.+... .........   +++.++++.+|+.+..++.+.+||+++
T Consensus        88 ~~-~~~lT~~e~l~~~~~l~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~lS~G~  141 (293)
T COG1131          88 SL-YPELTVRENLEFFARLYGLSKEEAE---ERIEELLELFGLEDKANKKVRTLSGGM  141 (293)
T ss_pred             CC-CccccHHHHHHHHHHHhCCChhHHH---HHHHHHHHHcCCchhhCcchhhcCHHH
Confidence            42 223345555544222 121112222   334445555666666688899999964

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.56  E-value=2.6e-15  Score=132.82  Aligned_cols=121  Identities=17%  Similarity=0.077  Sum_probs=76.0

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcceeeeccccCC--
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRTSSVGNDILGF--  260 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v~~~~~~~~~~--  260 (320)
                      .|+...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++....  .......++.++|+...+  
T Consensus         9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~   87 (220)
T cd03265           9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLT-TLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE   87 (220)
T ss_pred             EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEecCcChHHHhhcEEEecCCcccccc
Confidence            33344567777775   9999999999999999999999 999999999998754321  011112344444443222  


Q ss_pred             ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.+++..... .......   ...++.++++.+|+.+..++++..|||++.
T Consensus        88 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  137 (220)
T cd03265          88 LTGWENLYIHARLYGVPGAE---RRERIDELLDFVGLLEAADRLVKTYSGGMR  137 (220)
T ss_pred             CcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCHHHhhCChhhCCHHHH
Confidence            233333332111 1111221   223445566667778888999999999654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.55  E-value=1.6e-14  Score=128.31  Aligned_cols=100  Identities=56%  Similarity=0.786  Sum_probs=84.4

Q ss_pred             ccccccCCC-CCceEEEeCCCcchhh--ccCCCC--ccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138          4 IVDQTPCTA-ENAASVFETRIHERDD--DLPEAS--PADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus         4 ~~~~~~~~~-~~~~~~~d~pgh~~~~--~~~~~~--~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      |.|.+.|.. ...+.++|+|||++|.  |+.|..  .+|++++  ||+++.|+.+++++|+.++..+++|.++++||+|+
T Consensus        73 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~ll--Vvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~  150 (224)
T cd04165          73 ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAML--VVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL  150 (224)
T ss_pred             cccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence            444555522 2458999999999998  776654  7999988  99999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCCCccccCc
Q psy15138         79 CPPNVLQDTLKLLVRILKSPGCRKVPV  105 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~~~~~~i~~  105 (320)
                      .+...++..++++.+.|+..+|...|+
T Consensus       151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~  177 (224)
T cd04165         151 APANILQETLKDLKRILKVPGVRKLPV  177 (224)
T ss_pred             cCHHHHHHHHHHHHHHhcCCCccccce
Confidence            998899999999999988777765543

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=2.8e-15  Score=142.80  Aligned_cols=130  Identities=18%  Similarity=0.143  Sum_probs=86.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v  250 (320)
                      .++++++.+.|    +...+++++++.   |++++|+|||||||||||++|+ |+++|++|+|.+++.... .......+
T Consensus        19 ~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~i   93 (377)
T PRK11607         19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLA-GFEQPTAGQIMLDGVDLSHVPPYQRPI   93 (377)
T ss_pred             eEEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHCCE
Confidence            46666655544    233456666665   9999999999999999999999 999999999999865421 01112334


Q ss_pred             eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.++|+...|  .++.+++.++.. ......+   ..+++.++++.+++.++.+++|.+|||++.
T Consensus        94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~---~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~  155 (377)
T PRK11607         94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE---IASRVNEMLGLVHMQEFAKRKPHQLSGGQR  155 (377)
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            4555554333  356666665432 2222222   234455666677778889999999999653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.55  E-value=3e-15  Score=142.42  Aligned_cols=129  Identities=16%  Similarity=0.050  Sum_probs=83.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS  251 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~  251 (320)
                      ++++++++.|    +...+++++++.   |++++|+|||||||||||++|+ |+++|++|+|.+++.+... ......++
T Consensus         4 l~i~~l~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia-Gl~~p~~G~I~~~g~~i~~~~~~~~~i~   78 (369)
T PRK11000          4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA-GLEDITSGDLFIGEKRMNDVPPAERGVG   78 (369)
T ss_pred             EEEEEEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCCCCHhHCCEE
Confidence            4555554443    334567777765   9999999999999999999999 9999999999987643211 01112345


Q ss_pred             eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++|+...|  .++.+++.++.. ......+   ...++.++++.+|+.++.++++.+|||++.
T Consensus        79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~---~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~  139 (369)
T PRK11000         79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEE---INQRVNQVAEVLQLAHLLDRKPKALSGGQR  139 (369)
T ss_pred             EEeCCcccCCCCCHHHHHHhHHhhcCCCHHH---HHHHHHHHHHHcCChhhhcCChhhCCHHHH
Confidence            555554333  245555554322 1222222   223455666677778889999999999653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.55  E-value=1.6e-15  Score=126.91  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=86.8

Q ss_pred             eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------------------hh
Q psy15138        186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------------------KH  243 (320)
Q Consensus       186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------------------~~  243 (320)
                      -+.|+...+++.+++.   |+.+.|+|.|||||||+||||+ -+..|+.|.|++++...                   ..
T Consensus        13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~   91 (256)
T COG4598          13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL   91 (256)
T ss_pred             HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence            3456677788888886   9999999999999999999999 99999999998874320                   11


Q ss_pred             hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      +.+.|+++|.|..+..++...+++..+.. ...++.   +..+++..+++.+|+.++.+.+|..|||++..
T Consensus        92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~---ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQ  159 (256)
T COG4598          92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA---EAIERAEKYLAKVGIAEKADAYPAHLSGGQQQ  159 (256)
T ss_pred             HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHH---HHHHHHHHHHHHhCchhhhhcCccccCchHHH
Confidence            22345666655433223333444444332 233333   34556667788899999999999999997654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.55  E-value=4.1e-15  Score=131.30  Aligned_cols=117  Identities=18%  Similarity=0.134  Sum_probs=74.6

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-------hhhcCcceeeeccccCC-
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-------EMESGRTSSVGNDILGF-  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-------~~~~g~v~~~~~~~~~~-  260 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...       ......++.++|....| 
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   95 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILG-GLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP   95 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHh-CCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence            4567777765   9999999999999999999999 9999999999987543210       00112344444443222 


Q ss_pred             -ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 -DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 -~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                       .++.+++..... .......   ..+++.++++.+|+.+..++.+..|||++.
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  146 (218)
T cd03255          96 DLTALENVELPLLLAGVPKKE---RRERAEELLERVGLGDRLNHYPSELSGGQQ  146 (218)
T ss_pred             CCcHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHcCCchhhhcChhhcCHHHH
Confidence             244444433211 1111111   223445566667778888999999999653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.55  E-value=3e-15  Score=130.15  Aligned_cols=124  Identities=16%  Similarity=0.048  Sum_probs=83.4

Q ss_pred             eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----chhhhhcCcceeeeccc
Q psy15138        185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----HKHEMESGRTSSVGNDI  257 (320)
Q Consensus       185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----~~~~~~~g~v~~~~~~~  257 (320)
                      +...|+..+++.++++.   |++++|+|+||+|||||||.|+ |+.++.+|+|.+.+.+    ..|+....-+.+++|..
T Consensus         9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~-Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR   87 (237)
T COG0410           9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIM-GLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR   87 (237)
T ss_pred             EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc
Confidence            34456667888888886   9999999999999999999999 9999999999998665    23333333344554433


Q ss_pred             --cCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        258 --LGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       258 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                        +.-.++.+|+..+..............+++.+++-  -+.+++++....|||++
T Consensus        88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP--~Lker~~~~aG~LSGGE  141 (237)
T COG0410          88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFP--RLKERRNQRAGTLSGGE  141 (237)
T ss_pred             cchhhCcHHHHHhhhhhcccccccccccHHHHHHHCh--hHHHHhcCcccCCChHH
Confidence              33346667666554322211111111344444433  25788999999999964

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=2.2e-15  Score=142.12  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=82.3

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--hh
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--ME  246 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~~  246 (320)
                      ++++++++.|........++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    ..  ..
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN-LLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            34555544442100124567777775   9999999999999999999999 999999999998864321    10  11


Q ss_pred             cCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        247 SGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ...++.++|+...+  .++.+++..+.. .......   ..+++.++++.+|+.++.++++.+|||++.
T Consensus        81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~---~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~  146 (343)
T PRK11153         81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAE---IKARVTELLELVGLSDKADRYPAQLSGGQK  146 (343)
T ss_pred             hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            22344445443322  244455443221 1122222   223455566677778888999999999653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.8e-14  Score=142.94  Aligned_cols=228  Identities=14%  Similarity=0.125  Sum_probs=127.7

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----Ccccccc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLI  110 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~  110 (320)
                      .+..+.++.||+++-. |.++++    +.+|..+..++.+.+.++.+.   +.  +       ..|+++    .+++ .+
T Consensus       147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i-~~  225 (510)
T PRK09700        147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS-VC  225 (510)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE-ee
Confidence            3567789999999999 788888    999999999999888887542   11  1       223333    2333 34


Q ss_pred             CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138        111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL  190 (320)
Q Consensus       111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      .|+++.+..  .+..++..   +...       ........           ..  .........++++++++.+     
T Consensus       226 ~g~~~~~~~--~~~~~~~~---~~~~-------~~~~~~~~-----------~~--~~~~~~~~~l~~~~l~~~~-----  275 (510)
T PRK09700        226 SGMVSDVSN--DDIVRLMV---GREL-------QNRFNAMK-----------EN--VSNLAHETVFEVRNVTSRD-----  275 (510)
T ss_pred             ecchhhCCH--HHHHHHhc---CCCc-------cccccccc-----------cc--cccCCCCcEEEEeCccccC-----
Confidence            455554321  11111110   0000       00000000           00  0000112357777777543     


Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h----hhhcCcceeeec--ccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H----EMESGRTSSVGN--DIL  258 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~----~~~~g~v~~~~~--~~~  258 (320)
                       ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   .    ...+++++|.++  ..+
T Consensus       276 -~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  353 (510)
T PRK09700        276 -RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLF-GVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF  353 (510)
T ss_pred             -CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc
Confidence             1257777765   9999999999999999999999 999999999998754311   0    112344444321  111


Q ss_pred             CCccccceeecCCCC---CC----CHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        259 GFDSVGNVVNKPEHG---SL----DWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~~~~~~~v~~~~~~---~~----~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ...++.+++......   ..    ......+...++.++++.+|+. +..++++..|||++.
T Consensus       354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  415 (510)
T PRK09700        354 PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ  415 (510)
T ss_pred             CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHH
Confidence            112344444332110   00    0000111123345566667776 678999999999754

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.55  E-value=3.1e-15  Score=131.17  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=80.3

Q ss_pred             cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCc---cc
Q psy15138        190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFD---SV  263 (320)
Q Consensus       190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~---~~  263 (320)
                      ....+|++++|.   |++++|+|+||||||||+|+|+ |.++|++|++...+          .++.....-.+|.   +.
T Consensus        38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlklia-Gi~~Pt~G~v~v~G----------~v~~li~lg~Gf~pelTG  106 (249)
T COG1134          38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-GIYKPTSGKVKVTG----------KVAPLIELGAGFDPELTG  106 (249)
T ss_pred             ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHh-CccCCCCceEEEcc----------eEehhhhcccCCCcccch
Confidence            346678888886   9999999999999999999999 99999999999853          3333332223332   23


Q ss_pred             ccee-ecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCC
Q psy15138        264 GNVV-NKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGH  310 (320)
Q Consensus       264 ~~~v-~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~  310 (320)
                      .+++ ..+....+...++.++.++++++-++   .++.++++..+|.+
T Consensus       107 reNi~l~~~~~G~~~~ei~~~~~eIieFaEL---G~fi~~PvktYSSG  151 (249)
T COG1134         107 RENIYLRGLILGLTRKEIDEKVDEIIEFAEL---GDFIDQPVKTYSSG  151 (249)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHH---HHHhhCchhhccHH
Confidence            3333 44445667778888888888887776   88999999999874

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=3.5e-15  Score=138.48  Aligned_cols=133  Identities=14%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             eeeeecCCCeeeee-cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----------
Q psy15138        176 LRQRKLDNGLTGQY-LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----------  241 (320)
Q Consensus       176 ~~~~~~~~~~~~~~-~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----------  241 (320)
                      ++++++++.|.... ....+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.          
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLN-ALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEEeceeccccccccccc
Confidence            45565555543211 112467777775   9999999999999999999999 99999999998864321          


Q ss_pred             -----------------h---hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cc
Q psy15138        242 -----------------K---HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RY  299 (320)
Q Consensus       242 -----------------~---~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~  299 (320)
                                       .   ....+|+++|.+...+...++.+++.++.. ......+..   +++.++++.+|+. ++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~  158 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAK---KRAAKYIELVGLDESY  158 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHH---HHHHHHHHHcCCChhh
Confidence                             0   011245555543222222355555544322 122333333   3445566667775 68


Q ss_pred             cccccccccCCCC
Q psy15138        300 LKTTVFGMTGHVP  312 (320)
Q Consensus       300 ~~~~~~~LSG~~~  312 (320)
                      .++.+..|||++.
T Consensus       159 ~~~~~~~LSgGqk  171 (305)
T PRK13651        159 LQRSPFELSGGQK  171 (305)
T ss_pred             hhCChhhCCHHHH
Confidence            8999999999653

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.55  E-value=3.3e-15  Score=131.48  Aligned_cols=121  Identities=18%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--c
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--D  261 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~  261 (320)
                      .|....++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+... ......++.++|....+  .
T Consensus         9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~   87 (213)
T cd03259           9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA-GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHL   87 (213)
T ss_pred             EeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCC
Confidence            33335577777775   9999999999999999999999 9999999999987543111 11112344444443222  2


Q ss_pred             cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +..+++..... .......   ...++.++++.+|+.++.++.+..|||++.
T Consensus        88 tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  136 (213)
T cd03259          88 TVAENIAFGLKLRGVPKAE---IRARVRELLELVGLEGLLNRYPHELSGGQQ  136 (213)
T ss_pred             cHHHHHHhHHHHcCCCHHH---HHHHHHHHHHHcCChhhhhcChhhCCHHHH
Confidence            33444432211 1111111   223445566667778888999999999653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=3.4e-15  Score=133.35  Aligned_cols=134  Identities=16%  Similarity=0.110  Sum_probs=82.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---  244 (320)
                      +++++++.+.|........++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    ..   
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~i~~~~~~~~~~   83 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG-GLDTPTSGDVIFNGQPMSKLSSAAKAE   83 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcCcCCHHHHHH
Confidence            456666655543211113466666665   9999999999999999999999 999999999998764311    00   


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .....++.++|+...+  .+..+++..... .......   ..+++.++++.+|+.+..++.+.+|||++.
T Consensus        84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  151 (233)
T PRK11629         84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE---INSRALEMLAAVGLEHRANHRPSELSGGER  151 (233)
T ss_pred             HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            1112344455543222  244444433211 1112222   223445566667778888899999999653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.54  E-value=3.9e-15  Score=140.01  Aligned_cols=130  Identities=15%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGR  249 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~  249 (320)
                      +++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++.+..  .......
T Consensus        41 ~i~i~nl~k~y----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~-Gl~~p~~G~i~i~G~~~~~~~~~~~~~  115 (340)
T PRK13536         41 AIDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMIL-GMTSPDAGKITVLGVPVPARARLARAR  115 (340)
T ss_pred             eEEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCceEEEECCEECCcchHHHhcc
Confidence            56777665544    445678888776   9999999999999999999999 999999999999865421  1111233


Q ss_pred             ceeeeccccCC--ccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...+  .++.+++.. ............   .++.++++.+++.+..++.+.+|||++.
T Consensus       116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~ll~~~~L~~~~~~~~~~LS~G~k  178 (340)
T PRK13536        116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIE---AVIPSLLEFARLESKADARVSDLSGGMK  178 (340)
T ss_pred             EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhCCChhhCCHHHH
Confidence            44444443222  234444432 211112222222   2334555667778888999999999643

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.54  E-value=4.4e-15  Score=130.69  Aligned_cols=121  Identities=24%  Similarity=0.137  Sum_probs=76.3

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcceeeeccccCC-cc
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRTSSVGNDILGF-DS  262 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v~~~~~~~~~~-~~  262 (320)
                      .|+...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+++++|.+.....+ .+
T Consensus         8 ~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~t   86 (213)
T cd03235           8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL-GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPIS   86 (213)
T ss_pred             EECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCc
Confidence            34334567777775   9999999999999999999999 999999999998764321 112244444443211111 24


Q ss_pred             ccceeecCCCCC-----CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEHGS-----LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~~~-----~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+++.......     .....   ..+++.++++.+|+.+..++++..|||++.
T Consensus        87 v~e~l~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  138 (213)
T cd03235          87 VRDVVLMGLYGHKGLFRRLSKA---DKAKVDEALERVGLSELADRQIGELSGGQQ  138 (213)
T ss_pred             HHHHHHhccccccccccCCCHH---HHHHHHHHHHHcCCHHHHhCCcccCCHHHH
Confidence            444443322111     01111   123445566667778888899999999653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.54  E-value=4e-15  Score=138.01  Aligned_cols=117  Identities=16%  Similarity=0.055  Sum_probs=74.8

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcceeeeccccCCcc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVGNDILGFDS  262 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~~~~~~~~~  262 (320)
                      ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...     ...+|+++|.+..+.. .+
T Consensus         5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~-~t   82 (302)
T TIGR01188         5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLT-TLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED-LT   82 (302)
T ss_pred             CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC-Cc
Confidence            34567777765   9999999999999999999999 9999999999987643211     1124444443322111 23


Q ss_pred             ccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+++.... ..........   +++.++++.+|+.+..++.+..|||++.
T Consensus        83 v~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSgG~~  130 (302)
T TIGR01188        83 GRENLEMMGRLYGLPKDEAE---ERAEELLELFELGEAADRPVGTYSGGMR  130 (302)
T ss_pred             HHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCChhHhCCchhhCCHHHH
Confidence            444443211 1112222222   3344566667778888999999999653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=4.2e-15  Score=136.88  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=82.1

Q ss_pred             eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--------
Q psy15138        176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--------  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--------  243 (320)
                      ++++++++.|..... ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...        
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLN-GLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEECCEECCCcCccHHHH
Confidence            455555555432111 13467777765   9999999999999999999999 9999999999987644211        


Q ss_pred             hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc--cccccccccccCCCC
Q psy15138        244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE--RYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~--~~~~~~~~~LSG~~~  312 (320)
                      ...+|+++|.+...+...++.+++.+... ......+..   +++.++++.+|+.  ++.++.+..|||++.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~  150 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIE---NRVKRAMNIVGLDYEDYKDKSPFELSGGQK  150 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHH---HHHHHHHHHcCCCchhhccCCcccCCHHHH
Confidence            12345555543222212345555543221 122332222   3344556666775  578899999999653

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.54  E-value=4.7e-15  Score=130.78  Aligned_cols=116  Identities=21%  Similarity=0.168  Sum_probs=74.0

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--hhcCcceeeeccccCC--c
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--MESGRTSSVGNDILGF--D  261 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~~~g~v~~~~~~~~~~--~  261 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    ..  .....++.++|+...+  .
T Consensus        17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   95 (216)
T TIGR00960        17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLIL-GIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR   95 (216)
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence            466666665   9999999999999999999999 999999999998764321    00  0112334444443222  2


Q ss_pred             cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.+++..+.. .......   ..+++.++++.+|+.++.++.+.+|||++.
T Consensus        96 tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  144 (216)
T TIGR00960        96 TVYDNVAFPLRIIGVPPRD---ANERVSAALEKVGLEGKAHALPMQLSGGEQ  144 (216)
T ss_pred             cHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            44444433211 1111111   223455566677778888999999999654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.54  E-value=4.3e-14  Score=140.11  Aligned_cols=228  Identities=14%  Similarity=0.115  Sum_probs=124.3

Q ss_pred             hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138         53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS  111 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~  111 (320)
                      +..+.+++||+++-. |.++++    +.+|..+..++.+.+.++.+.   +.  +       ..|+++    .+++ ...
T Consensus       146 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i-~~~  224 (506)
T PRK13549        146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH-IGT  224 (506)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE-eee
Confidence            567789999999998 788888    999999998988888887531   11  0       112222    1121 122


Q ss_pred             CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138        112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL  191 (320)
Q Consensus       112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (320)
                      ++.+.+..  .+..+...   +...       ..               .+..  .........++++++++.|... +.
T Consensus       225 ~~~~~~~~--~~~~~~~~---~~~~-------~~---------------~~~~--~~~~~~~~~l~~~~l~~~~~~~-~~  274 (506)
T PRK13549        225 RPAAGMTE--DDIITMMV---GREL-------TA---------------LYPR--EPHTIGEVILEVRNLTAWDPVN-PH  274 (506)
T ss_pred             cccccCCH--HHHHHHhh---CcCc-------cc---------------cccc--cccCCCCceEEEecCccccccc-cc
Confidence            22222110  00000000   0000       00               0000  0000112357788877665311 12


Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-CCCceeeeccccch----hhhhcCcceeeeccc-----c
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-NGRGHARQKLFRHK----HEMESGRTSSVGNDI-----L  258 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~-----~  258 (320)
                      ..++++++|.   |++++|+||||||||||+|+|+ |+++ |++|+|.+++.+..    .......++.++|..     +
T Consensus       275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  353 (506)
T PRK13549        275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLF-GAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV  353 (506)
T ss_pred             cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHh-CCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence            3467777775   9999999999999999999999 9998 59999998754311    011112234444442     1


Q ss_pred             CCccccceeecCCCCCC---CHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        259 GFDSVGNVVNKPEHGSL---DWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ...++.+++..+.....   ......+...++.++++.+++. +..++++..|||++.
T Consensus       354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k  411 (506)
T PRK13549        354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQ  411 (506)
T ss_pred             CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHH
Confidence            12244444433211000   0001111223455666677775 578899999999754

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.54  E-value=5.2e-15  Score=130.95  Aligned_cols=116  Identities=17%  Similarity=0.141  Sum_probs=73.8

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---hhcCcceeeeccccCC--
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---MESGRTSSVGNDILGF--  260 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~~~g~v~~~~~~~~~~--  260 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+..    ..   .+...++.++|....+  
T Consensus        19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   97 (221)
T TIGR02211        19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG-GLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD   97 (221)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence            466666665   9999999999999999999999 999999999998754311    00   0112344445543322  


Q ss_pred             ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+..+++..... .......   ..+++.++++.+|+.+..++.+..|||++.
T Consensus        98 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  147 (221)
T TIGR02211        98 FTALENVAMPLLIGKKSVKE---AKERAYEMLEKVGLEHRINHRPSELSGGER  147 (221)
T ss_pred             CcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            234444433211 1111111   223344566667778888999999999654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.53  E-value=4.7e-15  Score=130.45  Aligned_cols=120  Identities=13%  Similarity=0.049  Sum_probs=75.9

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS  262 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~  262 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+... ......++.++|....+  .+
T Consensus        10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t   88 (213)
T cd03301          10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA-GLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT   88 (213)
T ss_pred             ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence            3334567777765   9999999999999999999999 9999999999987543211 01112344444443222  23


Q ss_pred             ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+++..... .......   ..+++.++++.+|+.++.++.+..|||++.
T Consensus        89 v~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  136 (213)
T cd03301          89 VYDNIAFGLKLRKVPKDE---IDERVREVAELLQIEHLLDRKPKQLSGGQR  136 (213)
T ss_pred             HHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCHHHHhCChhhCCHHHH
Confidence            3444433211 1112222   223445566677778888999999999653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.53  E-value=5.5e-15  Score=137.12  Aligned_cols=130  Identities=15%  Similarity=0.034  Sum_probs=80.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGR  249 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~  249 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..  .......
T Consensus         4 ~i~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   78 (303)
T TIGR01288         4 AIDLVGVSKSY----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLL-GMISPDRGKITVLGEPVPSRARLARVA   78 (303)
T ss_pred             EEEEEeEEEEe----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECcccHHHHhhc
Confidence            35555554443    345577777776   9999999999999999999999 999999999998754321  1111223


Q ss_pred             ceeeeccccCC--ccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...+  .++.+++.. ............   .++.++++.+++.+..++.+.+|||++.
T Consensus        79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~ll~~~~l~~~~~~~~~~LSgG~~  141 (303)
T TIGR01288        79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIE---AVIPSLLEFARLESKADVRVALLSGGMK  141 (303)
T ss_pred             EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCChhHhcCchhhCCHHHH
Confidence            44444443222  234444432 111112222222   2334555667778888999999999653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.53  E-value=1.2e-14  Score=144.79  Aligned_cols=227  Identities=15%  Similarity=0.103  Sum_probs=123.4

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh----hc--C-------CCcccc----Cccccc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI----LK--S-------PGCRKV----PVMNCL  109 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~----l~--~-------~~~~~i----~~kl~~  109 (320)
                      .+..+.+++||+++-. |.++++    +.+|..+..++.+.+.++...    +.  +       ..|+++    .+++. 
T Consensus       158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-  236 (529)
T PRK15134        158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV-  236 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-
Confidence            3577789999999999 788888    999999999999888887432    11  0       122222    22221 


Q ss_pred             cCCchhHHHHH-HHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeee
Q psy15138        110 ISPTEEQFDLL-QKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQ  188 (320)
Q Consensus       110 ~~gnyd~~~~l-~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      ..+..+.+... .....++..+...          .....                 . .......++++++++..|...
T Consensus       237 ~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----------------~-~~~~~~~~l~~~~l~~~~~~~  288 (529)
T PRK15134        237 EQNRAATLFSAPTHPYTQKLLNSEP----------SGDPV-----------------P-LPEPASPLLDVEQLQVAFPIR  288 (529)
T ss_pred             EeCCHHHHhhCCCCHHHHHHHHhCc----------ccccc-----------------c-cCCCCCCcccccCcEEEeecC
Confidence            22333222110 0000000000000          00000                 0 000112246666665555210


Q ss_pred             e-------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h-----hhhcCc
Q psy15138        189 Y-------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H-----EMESGR  249 (320)
Q Consensus       189 ~-------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~-----~~~~g~  249 (320)
                      .       ....++++++|.   |++++|+||||||||||+++|+ |+++ .+|+|.+++.+..    .     ...+++
T Consensus       289 ~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~-Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~  366 (529)
T PRK15134        289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL-RLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQV  366 (529)
T ss_pred             ccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHh-CcCC-CCcEEEECCEEccccchhhHHHhhhceEE
Confidence            0       123567777776   9999999999999999999999 9985 8999998764311    0     112344


Q ss_pred             ceeeec-cccCCccccceeecCCC-C--CCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        250 TSSVGN-DILGFDSVGNVVNKPEH-G--SLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~-~~~~~~~~~~~v~~~~~-~--~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ++|.+. ..+...++.+++..+.. .  ......   ...++.++++.+|+. +..++++.+|||++.
T Consensus       367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ---REQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             EEeCchhhcCCcccHHHHHHHHHHhccccCChHH---HHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence            444331 11212244444443211 1  112222   223445566667776 467899999999653

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.53  E-value=1.4e-14  Score=125.02  Aligned_cols=112  Identities=26%  Similarity=0.296  Sum_probs=87.5

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ....+.|||+|||++|.  |..+...+|.+++  ||++++|+.+++++|+.+++.+++|.++++||+|+. ...+++..+
T Consensus        68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ail--vVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~  144 (188)
T PF00009_consen   68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAIL--VVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIE  144 (188)
T ss_dssp             SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEE--EEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHH
T ss_pred             cccceeecccccccceeecccceeccccccee--eeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHH
Confidence            34568999999999999  8899999999999  999999999999999999999999999999999999 667777888


Q ss_pred             HHHHhh-cCCCccc-cCcc-ccccCCchhHHHHHHHHHHH
Q psy15138         90 LLVRIL-KSPGCRK-VPVM-NCLISPTEEQFDLLQKKIKS  126 (320)
Q Consensus        90 ~~~~~l-~~~~~~~-i~~k-l~~~~gnyd~~~~l~~q~~~  126 (320)
                      ++...+ +...+.. .... +..+.-+.+.+..|.+.+.+
T Consensus       145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~  184 (188)
T PF00009_consen  145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE  184 (188)
T ss_dssp             HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence            887444 4433332 1112 22445677778877776654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.53  E-value=5.5e-15  Score=129.33  Aligned_cols=123  Identities=13%  Similarity=0.150  Sum_probs=77.3

Q ss_pred             eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---h----hhhhcCcceeeec
Q psy15138        186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---K----HEMESGRTSSVGN  255 (320)
Q Consensus       186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~----~~~~~g~v~~~~~  255 (320)
                      ...|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++...   .    .......++.++|
T Consensus         5 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q   83 (206)
T TIGR03608         5 SKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQ   83 (206)
T ss_pred             EEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEec
Confidence            3444445677777775   9999999999999999999999 99999999998875431   0    1111223444444


Q ss_pred             cccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        256 DILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       256 ~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ....+  .+..+++..... .......   ..+++.++++.+|+.+..++.+.+|||++.
T Consensus        84 ~~~~~~~~t~~e~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~  140 (206)
T TIGR03608        84 NFALIENETVEENLDLGLKYKKLSKKE---KREKKKEALEKVGLNLKLKQKIYELSGGEQ  140 (206)
T ss_pred             chhhccCCcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCchhhhcCChhhCCHHHH
Confidence            43222  233344332211 1111111   233445566667778888999999999653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.53  E-value=9.3e-15  Score=130.97  Aligned_cols=132  Identities=16%  Similarity=0.068  Sum_probs=80.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS  251 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~  251 (320)
                      ++++++++.|    +...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++
T Consensus         3 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~i~   77 (239)
T cd03296           3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA-GLERPDSGTILFGGEDATDVPVQERNVG   77 (239)
T ss_pred             EEEEeEEEEE----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCCccccceE
Confidence            3455444433    334567777775   9999999999999999999999 9999999999987543111 11122344


Q ss_pred             eeeccccCC--ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        252 SVGNDILGF--DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       252 ~~~~~~~~~--~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++|....+  .++.+++..... ... ......+..+++.++++.+|+.+..++.+.+|||++.
T Consensus        78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  142 (239)
T cd03296          78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQR  142 (239)
T ss_pred             EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHH
Confidence            455543322  244444433211 111 0001111223444566667778888999999999654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.53  E-value=3.9e-15  Score=131.46  Aligned_cols=116  Identities=21%  Similarity=0.191  Sum_probs=74.7

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSVGN  265 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~~~  265 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...  ......++.++|+...|  .++.+
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   97 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA-GLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE   97 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence            467777765   9999999999999999999999 9999999999987543211  11123344455543222  23444


Q ss_pred             eeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        266 VVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++..... .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        98 ~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  142 (218)
T cd03266          98 NLEYFAGLYGLKGDE---LTARLEELADRLGMEELLDRRVGGFSTGMR  142 (218)
T ss_pred             HHHHHHHHcCCCHHH---HHHHHHHHHHHcCCHHHHhhhhhhcCHHHH
Confidence            4432111 1112222   223445566667778888999999999653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.53  E-value=1.8e-14  Score=144.89  Aligned_cols=110  Identities=19%  Similarity=0.280  Sum_probs=90.4

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      ..++|+|||||++|+  |++|++++|.+++  ||++++|+++||+||+.+++.+++| .+||+||+|+++.++++...++
T Consensus        51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL--VVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~e  128 (614)
T PRK10512         51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALL--VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQ  128 (614)
T ss_pred             cEEEEEECCCHHHHHHHHHHHhhcCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHH
Confidence            357999999999999  9999999999999  9999999999999999999999997 5789999999998999988889


Q ss_pred             HHHhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138         91 LVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS  126 (320)
Q Consensus        91 ~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~  126 (320)
                      +.+.+...++...+. +..+.-+.+..+++.+.+..
T Consensus       129 i~~~l~~~~~~~~~i-i~VSA~tG~gI~~L~~~L~~  163 (614)
T PRK10512        129 VKAVLREYGFAEAKL-FVTAATEGRGIDALREHLLQ  163 (614)
T ss_pred             HHHHHHhcCCCCCcE-EEEeCCCCCCCHHHHHHHHH
Confidence            988876555443332 22344555667777766654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.53  E-value=7.6e-15  Score=131.15  Aligned_cols=123  Identities=14%  Similarity=0.033  Sum_probs=75.8

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccccCC-
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDILGF-  260 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~~-  260 (320)
                      |+...+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++....    .......++.++|....+ 
T Consensus        10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~   88 (236)
T cd03219          10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS-GFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFP   88 (236)
T ss_pred             ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCceEEECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence            3334567777775   9999999999999999999999 999999999998754311    111112234444443222 


Q ss_pred             -ccccceeecCCCCCCCH--------HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 -DSVGNVVNKPEHGSLDW--------VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 -~~~~~~v~~~~~~~~~~--------~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                       .++.+++..........        ....+...++.++++.+|+.+..++.+++|||++.
T Consensus        89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  149 (236)
T cd03219          89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQ  149 (236)
T ss_pred             CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHH
Confidence             24444443322110000        00112223455666667778888999999999653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.53  E-value=3.9e-15  Score=130.49  Aligned_cols=137  Identities=20%  Similarity=0.148  Sum_probs=96.5

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------hh
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------KH  243 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------~~  243 (320)
                      .++++++    .+..++.+.++++++++   |++++|+|||||||||||++++ |..+|++|.+.+.+.+.       ..
T Consensus        30 ~li~l~~----v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~-~~~~pssg~~~~~G~~~G~~~~~~el  104 (257)
T COG1119          30 PLIELKN----VSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT-GEHPPSSGDVTLLGRRFGKGETIFEL  104 (257)
T ss_pred             ceEEecc----eEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHh-cccCCCCCceeeeeeeccCCcchHHH
Confidence            3456654    45667788999999997   9999999999999999999999 99999999998765431       22


Q ss_pred             hhhcCcceeeecccc-CCccccceeecCCCCCCCHH---hHHHHHHHHHHHhcccCCccccccccccccCCCCCEE
Q psy15138        244 EMESGRTSSVGNDIL-GFDSVGNVVNKPEHGSLDWV---KICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFG  315 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~-~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~  315 (320)
                      +.++|+++...+..+ .-..+.+++..+.+...+..   ..+....++..+++.+|+.+..+++...||-++...+
T Consensus       105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv  180 (257)
T COG1119         105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV  180 (257)
T ss_pred             HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence            345677765433322 23456677766655322211   1123445566677788889999999999998765444

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.52  E-value=4.4e-15  Score=130.44  Aligned_cols=117  Identities=11%  Similarity=0.050  Sum_probs=74.3

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC--ccccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVGN  265 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~  265 (320)
                      ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+... .....++.++|+...+  .+..+
T Consensus        12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e   89 (210)
T cd03269          12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL-GIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID   89 (210)
T ss_pred             CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence            34566666665   9999999999999999999999 9999999999987643211 1122344444443222  23333


Q ss_pred             eeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        266 VVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.... ........   ..+++.++++.+|+.+..++.+.+|||++.
T Consensus        90 ~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  134 (210)
T cd03269          90 QLVYLAQLKGLKKEE---ARRRIDEWLERLELSEYANKRVEELSKGNQ  134 (210)
T ss_pred             HHHHHHHHcCCChHH---HHHHHHHHHHHcCChHHHhCcHhhCCHHHH
Confidence            333211 11111112   223445566667777788899999999654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=2e-14  Score=129.63  Aligned_cols=90  Identities=21%  Similarity=0.259  Sum_probs=79.2

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-CchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-IVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ..++|+|+||||-+.  |++|++-+|-|+|  ||+||++ ++|||+|||.-...+++. ++++=||+|+++.+...+.-+
T Consensus        86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlL--vIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~  163 (415)
T COG5257          86 RRVSFVDAPGHETLMATMLSGAALMDGALL--VIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYE  163 (415)
T ss_pred             EEEEEeeCCchHHHHHHHhcchhhhcceEE--EEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHH
Confidence            459999999999999  9999999999999  9999984 589999999999999995 556669999999988777779


Q ss_pred             HHHHhhcCCCccccCc
Q psy15138         90 LLVRILKSPGCRKVPV  105 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~  105 (320)
                      +++++++.....+.|.
T Consensus       164 qIk~FvkGt~Ae~aPI  179 (415)
T COG5257         164 QIKEFVKGTVAENAPI  179 (415)
T ss_pred             HHHHHhcccccCCCce
Confidence            9999999877666554

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.52  E-value=6.8e-16  Score=131.12  Aligned_cols=127  Identities=16%  Similarity=0.125  Sum_probs=88.1

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hhh---hhcCcceee
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KHE---MESGRTSSV  253 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~~---~~~g~v~~~  253 (320)
                      ++.+.|..+++++++++.   ||+|+++|||||||||.+.++. |+.+|++|.|.++..+.    .+.   .-+||.+|.
T Consensus         9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~-Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE   87 (243)
T COG1137           9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIV-GLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQE   87 (243)
T ss_pred             hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEE-EEEecCCceEEECCcccccCChHHHhhcCccccccc
Confidence            445566778889999886   9999999999999999999999 99999999999986551    122   234666655


Q ss_pred             eccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        254 GNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       254 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.-+-. .++.+++..............++..++.++++.+.+.+..+++...|||+..
T Consensus        88 ~SIFr~-LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGER  145 (243)
T COG1137          88 ASIFRK-LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGER  145 (243)
T ss_pred             chHhhc-CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchH
Confidence            433222 3455555433221111111123444566777788889999999999999753

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=7.9e-15  Score=132.83  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcceeeeccccCC--ccccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRTSSVGNDILGF--DSVGN  265 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v~~~~~~~~~~--~~~~~  265 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....+++   +|....+  .++.+
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~v---~q~~~~~~~~tv~e   89 (255)
T PRK11248         14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIA-GFVPYQHGSITLDGKPVEGPGAERGVV---FQNEGLLPWRNVQD   89 (255)
T ss_pred             eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCCcEEEE---eCCCccCCCCcHHH
Confidence            4566777765   9999999999999999999999 999999999998754321 11123444   4432222  23444


Q ss_pred             eeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        266 VVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++..... .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        90 ~l~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  134 (255)
T PRK11248         90 NVAFGLQLAGVEKMQ---RLEIAHQMLKKVGLEGAEKRYIWQLSGGQR  134 (255)
T ss_pred             HHHhHHHHcCCCHHH---HHHHHHHHHHHcCChhHhhCChhhCCHHHH
Confidence            4433211 1112222   223445566667777788899999999653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.52  E-value=8e-15  Score=129.75  Aligned_cols=114  Identities=18%  Similarity=0.110  Sum_probs=74.0

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC--ccccce
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVGNV  266 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~  266 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+...  ....++.++|....+  .+..++
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~   93 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA-GLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDN   93 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHH
Confidence            4567777765   9999999999999999999999 9999999999987543211  112334444443222  234444


Q ss_pred             eecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        267 VNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       267 v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +..... ......   ...+++.++++.+|+.++.++.+..|||++
T Consensus        94 l~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  136 (220)
T cd03293          94 VALGLELQGVPKA---EARERAEELLELVGLSGFENAYPHQLSGGM  136 (220)
T ss_pred             HHHHHHHcCCCHH---HHHHHHHHHHHHcCChhhhhCCcccCCHHH
Confidence            432211 111111   122345566666777888899999999965

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.52  E-value=4.1e-14  Score=140.04  Aligned_cols=128  Identities=18%  Similarity=0.141  Sum_probs=77.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~  247 (320)
                      ++++++++.         ..+++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   . ....
T Consensus       257 ~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~-G~~~p~~G~I~~~g~~i~~~~~~~~~~  326 (501)
T PRK10762        257 RLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY-GALPRTSGYVTLDGHEVVTRSPQDGLA  326 (501)
T ss_pred             EEEEeCccc---------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHHHH
Confidence            456666542         246677765   9999999999999999999999 999999999998754311   0 1111


Q ss_pred             Ccceeeeccc-----cCCccccceeecCCC---CC-CCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        248 GRTSSVGNDI-----LGFDSVGNVVNKPEH---GS-LDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~-----~~~~~~~~~v~~~~~---~~-~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ..+++++|..     +...++.+++..+..   .. .......+..+++.++++.+|+. +..++++..|||++.
T Consensus       327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek  401 (501)
T PRK10762        327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ  401 (501)
T ss_pred             CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence            2244444442     111234444433211   00 00000111223445566667774 678999999999653

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.52  E-value=8.9e-15  Score=128.64  Aligned_cols=121  Identities=12%  Similarity=0.083  Sum_probs=76.4

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhcCcceeeeccccC
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMESGRTSSVGNDILG  259 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~~~~  259 (320)
                      .|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++.+..     .......++.++|+...
T Consensus         9 ~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   87 (213)
T cd03262           9 SFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNL   87 (213)
T ss_pred             EECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCccchhHHHHHhcceEEeccccc
Confidence            33334567777775   9999999999999999999999 999999999998754321     11112334444544332


Q ss_pred             C--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        260 F--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       260 ~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +  .+..+++....  ........   ...++.++++.+|+.+..++.+.+|||++.
T Consensus        88 ~~~~t~~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  141 (213)
T cd03262          88 FPHLTVLENITLAPIKVKGMSKAE---AEERALELLEKVGLADKADAYPAQLSGGQQ  141 (213)
T ss_pred             CCCCcHHHHHHhHHHHhcCCCHHH---HHHHHHHHHHHcCCHhHhhhCccccCHHHH
Confidence            2  23344443321  11112222   223344566667777788999999999653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.52  E-value=6.1e-15  Score=138.28  Aligned_cols=135  Identities=17%  Similarity=0.152  Sum_probs=85.9

Q ss_pred             eeeeeeecCCCeeeee---------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc
Q psy15138        174 VLLRQRKLDNGLTGQY---------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH  241 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~  241 (320)
                      .++++++++..|....         ....++++++|.   |++++|+|+||||||||+++|+ |+++|++|+|.+++.+.
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~-Gl~~p~~G~I~~~G~~i   85 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII-GLVKATDGEVAWLGKDL   85 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCcEEEECCEEC
Confidence            4667777665553210         124577888876   9999999999999999999999 99999999999875441


Q ss_pred             h----h--hhhcCcceeeecccc----CCccccceeecCCC---CCCCHHhHHHHHHHHHHHhcccCC-ccccccccccc
Q psy15138        242 K----H--EMESGRTSSVGNDIL----GFDSVGNVVNKPEH---GSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGM  307 (320)
Q Consensus       242 ~----~--~~~~g~v~~~~~~~~----~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~L  307 (320)
                      .    .  ....+.++.++|+..    ...++.+++..+..   ......+..   +++.++++.+|+ .+..+++|++|
T Consensus        86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~---~~~~~~l~~vgl~~~~~~~~p~~L  162 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVK---DRVKAMMLKVGLLPNLINRYPHEF  162 (331)
T ss_pred             CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHH---HHHHHHHHHcCCChHHhcCCcccC
Confidence            1    1  112345566666532    12344555443221   112322322   334455666666 45789999999


Q ss_pred             cCCCC
Q psy15138        308 TGHVP  312 (320)
Q Consensus       308 SG~~~  312 (320)
                      ||++.
T Consensus       163 SgG~~  167 (331)
T PRK15079        163 SGGQC  167 (331)
T ss_pred             CHHHH
Confidence            99754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.52  E-value=9.9e-15  Score=130.10  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=76.1

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccccCC
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDILGF  260 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~~  260 (320)
                      .|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++....    .......++.++|....+
T Consensus         9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~   87 (232)
T cd03218           9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV-GLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIF   87 (232)
T ss_pred             EeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcccc
Confidence            33445577777775   9999999999999999999999 999999999998754311    111112244444443222


Q ss_pred             --ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 --DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 --~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                        .+..+++..... .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        88 ~~~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  139 (232)
T cd03218          88 RKLTVEENILAVLEIRGLSKKE---REEKLEELLEEFHITHLRKSKASSLSGGER  139 (232)
T ss_pred             ccCcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence              234444433211 1111112   123344556666778888999999999654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.52  E-value=4.1e-15  Score=136.09  Aligned_cols=131  Identities=17%  Similarity=0.086  Sum_probs=82.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|..   ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++....   ......
T Consensus         4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   79 (274)
T PRK13647          4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN-GIYLPQRGRVKVMGREVNAENEKWVRS   79 (274)
T ss_pred             eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEECCEECCCCCHHHHHh
Confidence            4566666554421   23466666665   9999999999999999999999 999999999998864321   111122


Q ss_pred             cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.++|..   +...++.+++.++.. ........   ..++.++++.+|+.++.++.|..|||++.
T Consensus        80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~~L~~~~~~~~~~LSgG~~  144 (274)
T PRK13647         80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEV---ERRVEEALKAVRMWDFRDKPPYHLSYGQK  144 (274)
T ss_pred             hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHH---HHHHHHHHHHCCCHHHhcCChhhCCHHHH
Confidence            344444432   222344455443221 11222222   23445566677778889999999999653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.52  E-value=4.9e-15  Score=130.98  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=73.9

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcceeeeccccCC--cccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRTSSVGNDILGF--DSVG  264 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v~~~~~~~~~~--~~~~  264 (320)
                      ..+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..  .......++.++|+...+  .+..
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   93 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLT-GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR   93 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence            4567777765   9999999999999999999999 999999999998754321  111122344444443222  2333


Q ss_pred             ceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        265 NVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       265 ~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +++..... ........   ..++.++++..++.+..++.+.+|||++.
T Consensus        94 ~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  139 (220)
T cd03263          94 EHLRFYARLKGLPKSEI---KEEVELLLRVLGLTDKANKRARTLSGGMK  139 (220)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCHHHHhChhhhCCHHHH
Confidence            33332111 11111121   23344556666777788899999999654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.52  E-value=9.6e-15  Score=128.30  Aligned_cols=117  Identities=21%  Similarity=0.133  Sum_probs=73.2

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccc---cCCcc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDI---LGFDS  262 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~---~~~~~  262 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++....   .......++..+|..   +...+
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t   92 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN-GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT   92 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence            4567777765   9999999999999999999999 999999999998754311   111112334444442   11123


Q ss_pred             ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+++..... .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        93 ~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  140 (211)
T cd03225          93 VEEEVAFGLENLGLPEEE---IEERVEEALELVGLEGLRDRSPFTLSGGQK  140 (211)
T ss_pred             HHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence            4444332211 1111111   123344556666777788899999999653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.52  E-value=8.7e-15  Score=130.16  Aligned_cols=134  Identities=15%  Similarity=0.147  Sum_probs=81.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hh----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HE----  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~----  244 (320)
                      .++++++++.|........++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++....   ..    
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   84 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILA-GLDDGSSGEVSLVGQPLHQMDEEARAK   84 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCeeEEECCEEcccCCHHHHHH
Confidence            466666655443211012356666665   9999999999999999999999 999999999998754311   00    


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .....++.++|....+  .++.+++.... ........   ..+++.++++.+++.+..++.+..|||++.
T Consensus        85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~  152 (228)
T PRK10584         85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQ---SRNGAKALLEQLGLGKRLDHLPAQLSGGEQ  152 (228)
T ss_pred             HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCHhHhhCChhhCCHHHH
Confidence            1112344445543322  23344443221 11111112   223445566667778888899999999653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.52  E-value=1e-14  Score=147.75  Aligned_cols=254  Identities=17%  Similarity=0.084  Sum_probs=131.8

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh----hc--C-------CCcccc----Cccccc
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI----LK--S-------PGCRKV----PVMNCL  109 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~----l~--~-------~~~~~i----~~kl~~  109 (320)
                      .+..+.++.||++|-. |.++++    |.+|..+..++.+.+.++..-    +.  +       ..|+++    .+++. 
T Consensus       170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-  248 (623)
T PRK10261        170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-  248 (623)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-
Confidence            3577789999999999 788888    999998888888888777532    11  1       234433    33332 


Q ss_pred             cCCchhHHHHHH-HHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeee
Q psy15138        110 ISPTEEQFDLLQ-KKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQ  188 (320)
Q Consensus       110 ~~gnyd~~~~l~-~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      ..|+++.+.... ......+.+..-..-...+....+. ......+........ ...........+++++++++.|...
T Consensus       249 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~y~~~  326 (623)
T PRK10261        249 ETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRR-FPLISLEHPAKQEPP-IEQDTVVDGEPILQVRNLVTRFPLR  326 (623)
T ss_pred             ccCCHHHhhcCCCChhhhhhhhccCcccccccccCCcc-ccccccccccccCcc-cccccccCCCceEEEeeeEEEEcCC
Confidence            345655542110 0000011000000000000000000 000000000000000 0000000112357777776655310


Q ss_pred             e-------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h--hhhcCccee
Q psy15138        189 Y-------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H--EMESGRTSS  252 (320)
Q Consensus       189 ~-------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~--~~~~g~v~~  252 (320)
                      .       ....++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    .  ......++.
T Consensus       327 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~  405 (623)
T PRK10261        327 SGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL-RLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQF  405 (623)
T ss_pred             CccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEE
Confidence            0       013567777775   9999999999999999999999 999999999998764311    0  011234555


Q ss_pred             eecccc----CCccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        253 VGNDIL----GFDSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       253 ~~~~~~----~~~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ++|+..    ...++.+++..... ... ...   +..+++.++++.+|+. +..+++|++|||++.
T Consensus       406 v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~---~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr  469 (623)
T PRK10261        406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGK---AAAARVAWLLERVGLLPEHAWRYPHEFSGGQR  469 (623)
T ss_pred             EecCchhhcCCCCCHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence            555531    11234444432211 111 111   2234455667777775 678999999999754

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=8.6e-15  Score=134.30  Aligned_cols=132  Identities=13%  Similarity=0.109  Sum_probs=82.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|... ....+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..   ......
T Consensus         4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (279)
T PRK13650          4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLID-GLLEAESGQIIIDGDLLTEENVWDIRH   81 (279)
T ss_pred             eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEECCcCcHHHHHh
Confidence            35666665555321 112366666665   9999999999999999999999 999999999998764421   111122


Q ss_pred             cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .++.++|+.   +...++.+++.+... .........   .++.++++.+|+.++.++.+..|||++
T Consensus        82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~LSgGq  145 (279)
T PRK13650         82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK---ERVNEALELVGMQDFKEREPARLSGGQ  145 (279)
T ss_pred             hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHH---HHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence            344444442   222355555544321 122222222   344556666777888899999999965

>PRK10908 cell division protein FtsE; Provisional

Probab=99.51  E-value=1.2e-14  Score=128.89  Aligned_cols=117  Identities=19%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--hhcCcceeeeccccCC--
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--MESGRTSSVGNDILGF--  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~~~g~v~~~~~~~~~~--  260 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    ..  .....++.++|....+  
T Consensus        15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (222)
T PRK10908         15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLIC-GIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD   93 (222)
T ss_pred             CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence            3466776665   9999999999999999999999 999999999998754311    00  0112334444433221  


Q ss_pred             ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+..+++..... ......+   ...++.++++.+++.+..++.++.|||++.
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  143 (222)
T PRK10908         94 RTVYDNVAIPLIIAGASGDD---IRRRVSAALDKVGLLDKAKNFPIQLSGGEQ  143 (222)
T ss_pred             ccHHHHHHhHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCCchhCCHHHH
Confidence            233444433211 1122222   223344556667777788899999999653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=8.8e-15  Score=134.82  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------
Q psy15138        176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---------  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---------  242 (320)
                      ++++++++.|..... ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++....         
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLN-GLLQPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHh-cCCCCCCcEEEECCEECccccccccHH
Confidence            455666555532111 12366777765   9999999999999999999999 999999999999864311         


Q ss_pred             -hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                       ....+|+++|.++..+...++.+++.+... ......+..+   ++.++++.+|+. ++.++.+..|||++.
T Consensus        81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~---~~~~~l~~~~L~~~~~~~~~~~LSgGqk  150 (288)
T PRK13643         81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK---IAAEKLEMVGLADEFWEKSPFELSGGQM  150 (288)
T ss_pred             HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH---HHHHHHHHcCCChhhccCCcccCCHHHH
Confidence             112345555543222222355555543321 1222233333   344555566664 577899999999653

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.51  E-value=5e-15  Score=128.08  Aligned_cols=116  Identities=21%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhcCcceeeeccc---cCCc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMESGRTSSVGNDI---LGFD  261 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~~---~~~~  261 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..     .......++.++|+.   +...
T Consensus         6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLN-GLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            456666665   9999999999999999999999 999999999998754321     001112344444442   1112


Q ss_pred             cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.+++..... ........   .+++.++++.+|+.++.++.+..|||++.
T Consensus        85 tv~~nl~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  133 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEV---ERRVREALTAVGASGLRERPTHCLSGGEK  133 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCchhhhhCChhhCCHHHH
Confidence            44444433211 11122222   23344566667778888999999999653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.51  E-value=6.3e-14  Score=138.68  Aligned_cols=228  Identities=16%  Similarity=0.128  Sum_probs=121.2

Q ss_pred             hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138         53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS  111 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~  111 (320)
                      +..+.+++||+++-. |.++++    +.+|..+..++.+.+.++.+.   +.  +       ..|+++    .+++.. .
T Consensus       144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~-~  222 (500)
T TIGR02633       144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA-T  222 (500)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee-e
Confidence            567789999999999 778888    999999999999888887541   11  0       112222    112111 1


Q ss_pred             CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138        112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL  191 (320)
Q Consensus       112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (320)
                      ++.+.+..  ....+...   +.....                      .+..  ........++++++++..|... +.
T Consensus       223 ~~~~~~~~--~~~~~~~~---~~~~~~----------------------~~~~--~~~~~~~~~l~~~~l~~~~~~~-~~  272 (500)
T TIGR02633       223 KDMSTMSE--DDIITMMV---GREITS----------------------LYPH--EPHEIGDVILEARNLTCWDVIN-PH  272 (500)
T ss_pred             cCcccCCH--HHHHHHHh---Cccccc----------------------cccc--cccCCCCceEEEeCCccccccc-cc
Confidence            11111100  00000000   000000                      0000  0000111257777776554211 12


Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-CCceeeeccccch----h---hhhcCcceeeec--ccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-GRGHARQKLFRHK----H---EMESGRTSSVGN--DIL  258 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~~~~~~~~----~---~~~~g~v~~~~~--~~~  258 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++| .+|+|.+++.+..    .   ...+++++|.+.  ..+
T Consensus       273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~-G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~  351 (500)
T TIGR02633       273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF-GAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV  351 (500)
T ss_pred             ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh-CCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence            3467777775   9999999999999999999999 99985 8999998754321    0   112344444432  111


Q ss_pred             CCccccceeecCCCCCC---CHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138        259 GFDSVGNVVNKPEHGSL---DWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~  312 (320)
                      ...++.+++........   ......+...++.++++.+++.+ ..++++..|||++.
T Consensus       352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  409 (500)
T TIGR02633       352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ  409 (500)
T ss_pred             CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence            11233444433211000   00001112234445666667763 57899999999654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=8.4e-15  Score=134.82  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=81.8

Q ss_pred             eeeeecCCCeeeee-cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------
Q psy15138        176 LRQRKLDNGLTGQY-LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---------  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~-~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---------  242 (320)
                      ++++++++.|.... ....+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..         
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNIN-ALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEECccccccchHH
Confidence            45555554442111 013467777775   9999999999999999999999 999999999998754321         


Q ss_pred             -hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                       ....+|+++|.+...+...++.+++.++.. .........   .++.++++.+|+. +..++.+..|||++.
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~LSgGq~  151 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK---NYAHRLLMDLGFSRDVMSQSPFQMSGGQM  151 (286)
T ss_pred             HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHH---HHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence             111244555443211211245555544321 122222222   3344556667776 678899999999654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.51  E-value=7.2e-14  Score=138.58  Aligned_cols=231  Identities=10%  Similarity=0.022  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138         53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS  111 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~  111 (320)
                      +..+.+++||+++-. |.++++    +.+|..+..++.+.+.++.+.   +.  +       ..|+++    .+++ .+.
T Consensus       143 gG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i-~~~  221 (510)
T PRK15439        143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI-ALS  221 (510)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE-EEe
Confidence            467789999999999 788888    999999999999998887531   11  1       234433    3333 345


Q ss_pred             CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138        112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL  191 (320)
Q Consensus       112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (320)
                      |+++.+....  ...........  ..+. ........            +............++++++++.        
T Consensus       222 g~~~~~~~~~--~~~~~~~~~~~--~~~~-~~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~--------  276 (510)
T PRK15439        222 GKTADLSTDD--IIQAITPAARE--KSLS-ASQKLWLE------------LPGNRRQQAAGAPVLTVEDLTG--------  276 (510)
T ss_pred             cChHHcCHHH--HHHHHhCcccc--cccc-cccccccc------------ccccccccCCCCceEEEeCCCC--------
Confidence            6776653311  11111110000  0000 00000000            0000000001123566666652        


Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---hhcCcceeeecc--ccC
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---MESGRTSSVGND--ILG  259 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~~~g~v~~~~~~--~~~  259 (320)
                       ..+++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..    ..   ..+++++|.++.  .+.
T Consensus       277 -~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~  354 (510)
T PRK15439        277 -EGFRNISLEVRAGEILGLAGVVGAGRTELAETLY-GLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL  354 (510)
T ss_pred             -CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence             136666665   9999999999999999999999 999999999998754311    11   123444443221  111


Q ss_pred             CccccceeecCCCC--CCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        260 FDSVGNVVNKPEHG--SLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       260 ~~~~~~~v~~~~~~--~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ..+..+++......  ...... .+..+++.++++.+|+. +..++++..|||++.
T Consensus       355 ~~t~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k  409 (510)
T PRK15439        355 DAPLAWNVCALTHNRRGFWIKP-ARENAVLERYRRALNIKFNHAEQAARTLSGGNQ  409 (510)
T ss_pred             CCcHHHHHHhhhhhhhccccCh-HHHHHHHHHHHHHcCCCCCCccCccccCCcHHH
Confidence            11222332111000  000001 11123345566667776 678999999999754

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.51  E-value=1.3e-14  Score=129.54  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=74.6

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----h--hhcCcceeeeccccCC--c
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----E--MESGRTSSVGNDILGF--D  261 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~--~~~g~v~~~~~~~~~~--~  261 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...    .  .....++.++|....|  .
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN-GLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR   97 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence            567777775   9999999999999999999999 9999999999987543211    0  1122344445543333  2


Q ss_pred             cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +..+++..... .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        98 t~~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  146 (233)
T cd03258          98 TVFENVALPLEIAGVPKAE---IEERVLELLELVGLEDKADAYPAQLSGGQK  146 (233)
T ss_pred             cHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHCCChhhhhcChhhCCHHHH
Confidence            34444432211 1111111   223445566667778888899999999653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.51  E-value=2.4e-14  Score=130.70  Aligned_cols=89  Identities=26%  Similarity=0.298  Sum_probs=80.7

Q ss_pred             CCCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHH
Q psy15138         10 CTAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVL   84 (320)
Q Consensus        10 ~~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~l   84 (320)
                      .|++..+-|.|+||||-|.  |.+|++-+|.+++  .|+|..|+..|||+|-.|+.+||| .++|++|||||+  +++.+
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIl--LVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAIL--LVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEE--EEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHH
Confidence            4788889999999999999  9999999999999  999999999999999999999999 588999999995  78999


Q ss_pred             HHHHHHHHHhhcCCCc
Q psy15138         85 QDTLKLLVRILKSPGC  100 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~  100 (320)
                      +++..++..+....+.
T Consensus       160 ~~I~~dy~~fa~~L~~  175 (431)
T COG2895         160 EAIVADYLAFAAQLGL  175 (431)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999887664333

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.51  E-value=7.5e-15  Score=134.09  Aligned_cols=129  Identities=14%  Similarity=0.071  Sum_probs=78.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMES  247 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~  247 (320)
                      ++++++++.|    +...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..     .....
T Consensus         2 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   76 (271)
T PRK13638          2 LATSDLWFRY----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS-GLLRPQKGAVLWQGKPLDYSKRGLLALR   76 (271)
T ss_pred             eEEEEEEEEc----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCccEEEECCEEcccccCCHHHHH
Confidence            3445444433    334577777776   9999999999999999999999 999999999998764321     01111


Q ss_pred             Ccceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++.++|+.   +...+..+++..... ........   ..++.++++.+|+.++.++.+..|||++.
T Consensus        77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  142 (271)
T PRK13638         77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI---TRRVDEALTLVDAQHFRHQPIQCLSHGQK  142 (271)
T ss_pred             hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCHhHhcCCchhCCHHHH
Confidence            2344444442   112233333322111 11122222   23344556666777788899999999653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=9.3e-15  Score=134.79  Aligned_cols=133  Identities=19%  Similarity=0.149  Sum_probs=81.5

Q ss_pred             eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------h-
Q psy15138        176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------H-  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~-  243 (320)
                      ++++++++.|..... ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++....       . 
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN-GLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECCEECccccccchHH
Confidence            455555555432110 13467777765   9999999999999999999999 999999999999865321       1 


Q ss_pred             --hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        244 --EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 --~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                        ...+|+++|.+...+...++.+++.++.. ....+....+   ++.++++.+|+. +..++++..|||++.
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~~~~l~~~gL~~~~~~~~~~~LSgGq~  151 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ---KAREMIELVGLPEELLARSPFELSGGQM  151 (290)
T ss_pred             HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHCCCChhhhhCCcccCCHHHH
Confidence              11245555543211211245555543321 1223333222   344556666775 567899999999653

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.50  E-value=1.2e-14  Score=134.69  Aligned_cols=129  Identities=15%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRT  250 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v  250 (320)
                      ++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...  ......+
T Consensus         3 l~~~~l~~~~----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~-Gl~~~~~G~i~i~g~~~~~~~~~~~~~i   77 (301)
T TIGR03522         3 IRVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIIT-GYLPPDSGSVQVCGEDVLQNPKEVQRNI   77 (301)
T ss_pred             EEEEEEEEEE----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEcccChHHHHhce
Confidence            4455444433    345567777775   9999999999999999999999 9999999999987644211  1112234


Q ss_pred             eeeeccccCC--ccccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +..+|....+  .++.+++.... .....+....   .++.++++.+|+.+..++.+..|||++.
T Consensus        78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~LS~G~~  139 (301)
T TIGR03522        78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK---QRVEEMIELVGLRPEQHKKIGQLSKGYR  139 (301)
T ss_pred             EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCCchHhcCchhhCCHHHH
Confidence            4444443222  23444443211 1112222222   2344556666778888999999999653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.50  E-value=2.1e-14  Score=128.87  Aligned_cols=120  Identities=16%  Similarity=0.072  Sum_probs=74.7

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeeccccCC--
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDILGF--  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~~~~--  260 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...      ......++.++|....+  
T Consensus        15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   93 (243)
T TIGR02315        15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER   93 (243)
T ss_pred             cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence            4567777775   9999999999999999999999 9999999999987643110      01122334444443222  


Q ss_pred             ccccceeecCCCCC------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEHGS------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~~~------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.+++..+....      .......+...++.++++.+|+.+..++.+..|||++.
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  151 (243)
T TIGR02315        94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ  151 (243)
T ss_pred             ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence            24444443321110      00000011223455566667778888999999999654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.50  E-value=1.9e-14  Score=128.88  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=74.9

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hhhhcCcceeeeccccCC--
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HEMESGRTSSVGNDILGF--  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~~~~g~v~~~~~~~~~~--  260 (320)
                      ..+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..      .......++.++|+...|  
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   92 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLN-GLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER   92 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence            4567777765   9999999999999999999999 999999999998764311      111122344445543222  


Q ss_pred             ccccceeecCCCCC-------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEHGS-------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~~~-------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.+++.......       ..... ....+++.++++.+++.+..++.+.+|||++.
T Consensus        93 ~tv~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  150 (241)
T cd03256          93 LSVLENVLSGRLGRRSTWRSLFGLFP-KEEKQRALAALERVGLLDKAYQRADQLSGGQQ  150 (241)
T ss_pred             CcHHHHHHhhhcccchhhhhhcccCc-HHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence            24444443321110       00000 11223445566667778888999999999654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.50  E-value=1.6e-14  Score=127.24  Aligned_cols=117  Identities=20%  Similarity=0.129  Sum_probs=73.8

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h--hhhcCcceeeeccccCC--
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H--EMESGRTSSVGNDILGF--  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~--~~~~g~v~~~~~~~~~~--  260 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..    .  ......++.++|....+  
T Consensus        15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (214)
T TIGR02673        15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY-GALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD   93 (214)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence            3467777765   9999999999999999999999 999999999998754311    0  01112344444443222  


Q ss_pred             ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+..+++..... .......   ...++.++++.+++.+..++.+..|||++.
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  143 (214)
T TIGR02673        94 RTVYENVALPLEVRGKKERE---IQRRVGAALRQVGLEHKADAFPEQLSGGEQ  143 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            233343332211 1111211   223445566667777788899999999653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.50  E-value=3.2e-14  Score=126.95  Aligned_cols=105  Identities=20%  Similarity=0.215  Sum_probs=77.8

Q ss_pred             eeeeeecCCCeeeeec-----ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhh
Q psy15138        175 LLRQRKLDNGLTGQYL-----LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEME  246 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~-----~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~  246 (320)
                      +++++++.+.|.....     ...++++++|.   |+.++|||.||||||||-|+|. |+++|++|+|.+.+.+...   
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~-~L~~pt~G~i~f~g~~i~~---   79 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEILFEGKDITK---   79 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHH-cCcCCCCceEEEcCcchhh---
Confidence            4566666555443221     35788889886   9999999999999999999999 9999999999987543111   


Q ss_pred             cCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCCE
Q psy15138        247 SGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPDF  314 (320)
Q Consensus       247 ~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~~  314 (320)
                                   +.                  ..+..+++.++++.+|+. +++.++|+++||++...
T Consensus        80 -------------~~------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR  117 (268)
T COG4608          80 -------------LS------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR  117 (268)
T ss_pred             -------------cc------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence                         00                  223445566777777775 58999999999988654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.50  E-value=9.4e-15  Score=134.11  Aligned_cols=134  Identities=11%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             eeeeeecCCCeeeee--cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----hh
Q psy15138        175 LLRQRKLDNGLTGQY--LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----EM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~~  245 (320)
                      +++++++++.|....  ....++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...    ..
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMN-ALLIPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEeccccccHHH
Confidence            456666665553211  123467777775   9999999999999999999999 9999999999998544211    11


Q ss_pred             hcCcceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        246 ESGRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ....++.++|+.   +...++.+++.+... ........   .+++.++++.+|+.++.++.+.+|||++.
T Consensus        83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LS~G~~  150 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI---RERVDESLKKVGMYEYRRHAPHLLSGGQK  150 (280)
T ss_pred             HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHH---HHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence            122334444442   211233444433211 11222222   23445566677778889999999999653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.50  E-value=1.4e-14  Score=127.39  Aligned_cols=117  Identities=14%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSV  263 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~  263 (320)
                      ...++++++|.   | +++|+||||||||||+++|+ |+++|++|+|.+++.+...  ......++.++|+...|  .++
T Consensus        12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   89 (211)
T cd03264          12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILA-TLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV   89 (211)
T ss_pred             CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence            34567777765   8 99999999999999999999 9999999999987643110  11123344445443332  234


Q ss_pred             cceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        264 GNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       264 ~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+++.... .......+.   ..++.++++.+|+.+..++.+..|||++.
T Consensus        90 ~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  136 (211)
T cd03264          90 REFLDYIAWLKGIPSKEV---KARVDEVLELVNLGDRAKKKIGSLSGGMR  136 (211)
T ss_pred             HHHHHHHHHHhCCCHHHH---HHHHHHHHHHCCCHHHHhCchhhCCHHHH
Confidence            44443211 111111222   23344556667777788899999999653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.49  E-value=1.2e-14  Score=120.49  Aligned_cols=117  Identities=17%  Similarity=0.105  Sum_probs=82.1

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCcceeeeccccCC-ccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGRTSSVGNDILGF-DSV  263 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~v~~~~~~~~~~-~~~  263 (320)
                      ..+.+++++|.   |++++|+||||||||||+|+++ .+.+|++|.+.+.+..   ...+..+-.++++.|..-.| +++
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va-~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV   93 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV   93 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHH-hccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence            45677777776   9999999999999999999999 9999999999998655   22333444556665555444 677


Q ss_pred             cceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        264 GNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       264 ~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ++++.++......+.    ....+..++..+++. .++.+.+..|||+..
T Consensus        94 eDNlifP~~~r~rr~----dr~aa~~llar~~l~~~~L~k~it~lSGGE~  139 (223)
T COG4619          94 EDNLIFPWQIRNRRP----DRAAALDLLARFALPDSILTKNITELSGGEK  139 (223)
T ss_pred             hhccccchHHhccCC----ChHHHHHHHHHcCCchhhhcchhhhccchHH
Confidence            888777654221111    123344455556654 468899999999764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.49  E-value=1.8e-14  Score=128.89  Aligned_cols=118  Identities=19%  Similarity=0.141  Sum_probs=74.0

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSV  263 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~  263 (320)
                      ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...  ......++..+|....+  .+.
T Consensus        13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~   91 (236)
T TIGR03864        13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT-RLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV   91 (236)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence            34567777665   9999999999999999999999 9999999999987543110  01112344444443221  233


Q ss_pred             cceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        264 GNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       264 ~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+++..... .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        92 ~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  138 (236)
T TIGR03864        92 RQNLRYHAALHGLSRAE---ARERIAALLARLGLAERADDKVRELNGGHR  138 (236)
T ss_pred             HHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhcCChhhCCHHHH
Confidence            333332211 1111111   223445566667778888999999999654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=1.3e-14  Score=133.19  Aligned_cols=131  Identities=18%  Similarity=0.108  Sum_probs=82.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++.+.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ......
T Consensus         5 ~l~~~~l~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~-G~~~p~~G~i~~~g~~i~~~~~~~~~~   81 (279)
T PRK13635          5 IIRVEHISFRYPDA--ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLN-GLLLPEAGTITVGGMVLSEETVWDVRR   81 (279)
T ss_pred             eEEEEEEEEEeCCC--CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECCEECCcCcHHHHhh
Confidence            45666665554211  12356666665   9999999999999999999999 999999999999865421   111122


Q ss_pred             cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .++.++|+.   +...++.+++..... .......   ...++.++++.+|+.++.++.+..|||++
T Consensus        82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~---~~~~~~~~l~~~gL~~~~~~~~~~LS~G~  145 (279)
T PRK13635         82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREE---MVERVDQALRQVGMEDFLNREPHRLSGGQ  145 (279)
T ss_pred             heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHH---HHHHHHHHHHHcCChhhhhCCcccCCHHH
Confidence            344444443   222345555543321 1122222   23345566667777888999999999964

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.49  E-value=1.7e-13  Score=135.68  Aligned_cols=118  Identities=17%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccc-----cCCc
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDI-----LGFD  261 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~-----~~~~  261 (320)
                      .++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    .......+++++|..     +...
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLY-GATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHc-CCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            56677765   9999999999999999999999 999999999998754311    111112334444432     2112


Q ss_pred             cccceeecCCCCC-C--C-HHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        262 SVGNVVNKPEHGS-L--D-WVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~~~-~--~-~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      +..+++....... .  . +.......+++.++++.+++. +..++++..|||++.
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  402 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQ  402 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHH
Confidence            3444443321110 0  0 000111123455666677773 678999999999653

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.49  E-value=2.9e-14  Score=129.21  Aligned_cols=124  Identities=19%  Similarity=0.115  Sum_probs=80.2

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT  250 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v  250 (320)
                      ..++++++++.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++....  .....+
T Consensus        11 ~~l~i~~l~~~~~----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~--~~~~~i   83 (257)
T PRK11247         11 TPLLLNAVSKRYG----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLA-GLETPSAGELLAGTAPLA--EAREDT   83 (257)
T ss_pred             CcEEEEEEEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEHH--HhhCce
Confidence            4567776655543    34566777665   9999999999999999999999 999999999987643211  111233


Q ss_pred             eeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.++|....+  .++.+++......     ..   ..++.++++.+|+.+..++.+..|||++.
T Consensus        84 ~~v~q~~~l~~~~tv~enl~~~~~~-----~~---~~~~~~~l~~~gl~~~~~~~~~~LSgGqk  139 (257)
T PRK11247         84 RLMFQDARLLPWKKVIDNVGLGLKG-----QW---RDAALQALAAVGLADRANEWPAALSGGQK  139 (257)
T ss_pred             EEEecCccCCCCCcHHHHHHhcccc-----hH---HHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence            4444443222  2444444332111     11   12344556667778888999999999653

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.49  E-value=2.9e-15  Score=136.35  Aligned_cols=140  Identities=17%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             eeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-C----CCceeeecccc-----c--
Q psy15138        177 RQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-N----GRGHARQKLFR-----H--  241 (320)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-~----~~G~i~~~~~~-----~--  241 (320)
                      +++++.-.|....+..+++++++|.   ||++||||.|||||||+.+.|. |+++ |    .+|+|.+++.+     .  
T Consensus         3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim-~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIM-GLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHH-hccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            3444433333333346788888886   9999999999999999999999 9998 4    46888887653     1  


Q ss_pred             hhhhhcCcceeeeccccC-Cccc---cceeecCCCC--CC-CHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCE
Q psy15138        242 KHEMESGRTSSVGNDILG-FDSV---GNVVNKPEHG--SL-DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDF  314 (320)
Q Consensus       242 ~~~~~~g~v~~~~~~~~~-~~~~---~~~v~~~~~~--~~-~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~  314 (320)
                      ....+-..++.+||+... ++++   ++.+......  .. .+.+..+++.++++.+++.+-++..+.+|++|||++...
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR  161 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR  161 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence            112233456677776543 3332   2222222111  11 222333334444444444333458899999999988766


Q ss_pred             EEE
Q psy15138        315 GML  317 (320)
Q Consensus       315 ~~l  317 (320)
                      +|+
T Consensus       162 V~I  164 (316)
T COG0444         162 VMI  164 (316)
T ss_pred             HHH
Confidence            544

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.49  E-value=8.6e-14  Score=137.41  Aligned_cols=233  Identities=16%  Similarity=0.101  Sum_probs=124.3

Q ss_pred             hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138         53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS  111 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~  111 (320)
                      +..+.+++||+++-. |.++++    +.+|..+..++.+.+.++.+.   +.  +       ..|+.+    .+++ ...
T Consensus       138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i-~~~  216 (490)
T PRK10938        138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL-AET  216 (490)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE-EEe
Confidence            567789999999999 888888    999999999999999888541   11  1       223332    2333 233


Q ss_pred             CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138        112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL  191 (320)
Q Consensus       112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (320)
                      ++.+.+....  ...++..  .+........ ..       .+   .  ...   .........++++++++.|    +.
T Consensus       217 ~~~~~~~~~~--~~~~~~~--~~~~~~~~~~-~~-------~~---~--~~~---~~~~~~~~~l~~~~l~~~~----~~  272 (490)
T PRK10938        217 GEREEILQQA--LVAQLAH--SEQLEGVQLP-EP-------DE---P--SAR---HALPANEPRIVLNNGVVSY----ND  272 (490)
T ss_pred             CCHHHHhcch--hhhhhhh--hhccCccccC-cc-------cc---c--ccc---cccCCCCceEEEeceEEEE----CC
Confidence            4544432110  0011100  0000000000 00       00   0  000   0000112356777665544    33


Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-CCceeeeccccch-------hhhhcCcceeeeccccCC
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-GRGHARQKLFRHK-------HEMESGRTSSVGNDILGF  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~  260 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+.++ ++|+|.+++....       ....+++++|.+.....+
T Consensus       273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~-G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  351 (490)
T PRK10938        273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLIT-GDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV  351 (490)
T ss_pred             eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence            4467777775   9999999999999999999999 98876 6999998764310       111234444432111111


Q ss_pred             -ccccceeecCCCC--C-CCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138        261 -DSVGNVVNKPEHG--S-LDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP  312 (320)
Q Consensus       261 -~~~~~~v~~~~~~--~-~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~  312 (320)
                       .+..+++......  . ..... .+..+++.++++.+|+.+ ..++++..|||++.
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  407 (490)
T PRK10938        352 STSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQ  407 (490)
T ss_pred             CCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHH
Confidence             2233333221110  0 00000 111233445666677776 78999999999654

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=1.5e-14  Score=132.64  Aligned_cols=131  Identities=20%  Similarity=0.194  Sum_probs=81.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      +++++++++.|..   ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ......
T Consensus         3 ~l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   78 (277)
T PRK13652          3 LIETRDLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFN-GILKPTSGSVLIRGEPITKENIREVRK   78 (277)
T ss_pred             eEEEEEEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHHh
Confidence            3556665554421   12356666665   9999999999999999999999 999999999998764321   111122


Q ss_pred             cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.++|+.   +...++.+++..... ........   .+++.++++.+|+.+..++.+..|||++.
T Consensus        79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~  143 (277)
T PRK13652         79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETV---AHRVSSALHMLGLEELRDRVPHHLSGGEK  143 (277)
T ss_pred             heEEEecCcccccccccHHHHHHhHHHHcCCCHHHH---HHHHHHHHHHCCChhHhcCCcccCCHHHH
Confidence            334444432   211244444433211 11222222   23345566677778888999999999653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.49  E-value=2.6e-14  Score=126.93  Aligned_cols=117  Identities=20%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeeccc---cC-
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDI---LG-  259 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~---~~-  259 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.....      ......++.++|+.   +. 
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAIL-GLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP   97 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence            467777775   9999999999999999999999 9999999999987543211      11123344445543   11 


Q ss_pred             CccccceeecCCC-CCCCHHhHHHHHHH-HHHHhcccCCc-cccccccccccCCCC
Q psy15138        260 FDSVGNVVNKPEH-GSLDWVKICERSAK-VITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       260 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~-~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ..++.+++..... .......  +...+ +.++++..++. ...++.+..|||++.
T Consensus        98 ~~tv~~nl~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  151 (228)
T cd03257          98 RMTIGEQIAEPLRIHGKLSKK--EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQR  151 (228)
T ss_pred             cCCHHHHHHHHHHhccCCcHH--HHHHHHHHHHHHHCCCChhHhhCCchhcCHHHH
Confidence            1233444432211 1111111  11111 12455566664 577899999999653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.48  E-value=2.6e-14  Score=128.13  Aligned_cols=117  Identities=13%  Similarity=0.058  Sum_probs=74.5

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcceeeeccccCC--c
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVGNDILGF--D  261 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~~~~~~~--~  261 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...     ......++.++|....+  .
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   92 (240)
T PRK09493         14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCIN-KLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL   92 (240)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence            4567777765   9999999999999999999999 9999999999988643211     11112334444443222  2


Q ss_pred             cccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.+++.....  .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        93 tv~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  142 (240)
T PRK09493         93 TALENVMFGPLRVRGASKEE---AEKQARELLAKVGLAERAHHYPSELSGGQQ  142 (240)
T ss_pred             cHHHHHHhHHHHhcCCCHHH---HHHHHHHHHHHcCChHHHhcChhhcCHHHH
Confidence            44444433211  1112222   223445566667778888999999999653

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.48  E-value=2.6e-14  Score=130.47  Aligned_cols=130  Identities=18%  Similarity=0.091  Sum_probs=81.6

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h---hh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H---EM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~---~~  245 (320)
                      +++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   .   ..
T Consensus         7 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (269)
T PRK11831          7 LVDMRGVSFTR----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIG-GQIAPDHGEILFDGENIPAMSRSRLYT   81 (269)
T ss_pred             eEEEeCeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEccccChhhHHH
Confidence            56677665544    334566777765   9999999999999999999999 999999999998754311   0   00


Q ss_pred             hcCcceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        246 ESGRTSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ....++.++|....+  .++.+++.....  ......   ....++.++++.+|+.+..++.++.|||++.
T Consensus        82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  149 (269)
T PRK11831         82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAP---LLHSTVMMKLEAVGLRGAAKLMPSELSGGMA  149 (269)
T ss_pred             HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHH---HHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            112344444443222  234444433211  111111   1223445566677778888999999999654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.48  E-value=1.7e-14  Score=126.88  Aligned_cols=117  Identities=18%  Similarity=0.088  Sum_probs=74.4

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeeccccCC--
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDILGF--  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~~~~--  260 (320)
                      ..+++++++.   |++++|+||||||||||+++|+ |+++|++|++.+++.+...      ......++.++|+...+  
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~   92 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIY-KEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD   92 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence            3466777665   9999999999999999999999 9999999999887543110      01122344555543322  


Q ss_pred             ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+..+++..... .......   ..+++.++++.+|+.+..++.+.+|||++.
T Consensus        93 ~t~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  142 (214)
T cd03292          93 RNVYENVAFALEVTGVPPRE---IRKRVPAALELVGLSHKHRALPAELSGGEQ  142 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCHHHhhCChhhcCHHHH
Confidence            234444433211 1112222   223444566667778888899999999653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=3.7e-14  Score=129.14  Aligned_cols=134  Identities=15%  Similarity=0.074  Sum_probs=81.6

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMES  247 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~  247 (320)
                      ..++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   .....
T Consensus        10 ~~l~i~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~   84 (265)
T PRK10575         10 TTFALRNVSFRV----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG-RHQPPSEGEILLDAQPLESWSSKAFA   84 (265)
T ss_pred             ceEEEeeEEEEE----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCCEEEECCEehhhCCHHHHh
Confidence            356676665444    334567777775   9999999999999999999999 999999999998764311   11112


Q ss_pred             CcceeeeccccCC--ccccceeecCCCCCCCH--HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDW--VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~--~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+..++|....+  .+..+++..........  ........++.++++.+++.+..++++..|||++.
T Consensus        85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  153 (265)
T PRK10575         85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGER  153 (265)
T ss_pred             hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHH
Confidence            2344444442221  23444443321110000  00011123345566667778888999999999653

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.48  E-value=1.7e-14  Score=127.61  Aligned_cols=117  Identities=14%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----h--hhcCcceeeeccccCC--
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----E--MESGRTSSVGNDILGF--  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~--~~~g~v~~~~~~~~~~--  260 (320)
                      ...+++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.....    .  .....++.++|+...|  
T Consensus        18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (220)
T TIGR02982        18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIG-GLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF   96 (220)
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence            4466777765   9999999999999999999999 9999999999987543210    0  1122344444443222  


Q ss_pred             ccccceeecCCC-C-CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-G-SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+..+++..... . .....   +...++.++++.+|+.+..++.+..||+++.
T Consensus        97 ~t~~~n~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~  147 (220)
T TIGR02982        97 LTARQNVQMALELQPNLSYQ---EARERARAMLEAVGLGDHLDYYPHNLSGGQK  147 (220)
T ss_pred             CCHHHHHHHHHHhccCCCHH---HHHHHHHHHHHHcCChhhhhcChhhCCHHHH
Confidence            233444432211 1 11222   2233455666777778888999999999643

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.48  E-value=7.8e-14  Score=132.69  Aligned_cols=128  Identities=16%  Similarity=0.098  Sum_probs=88.8

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hh---hhhcCcceee
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KH---EMESGRTSSV  253 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~---~~~~g~v~~~  253 (320)
                      +.++.|+...+.+++++.   |++.||+|.||||||||+++|. |.++|++|+|.+++...    +.   ..-+|++.|+
T Consensus         9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~-G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH   87 (501)
T COG3845           9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILF-GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH   87 (501)
T ss_pred             ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHh-CcccCCcceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence            345566667777777775   9999999999999999999999 99999999999986541    11   2246777777


Q ss_pred             eccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        254 GNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       254 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      |.....|+..+|++.........+....+..+++.++.+..|+.=..+.++..||-+..
T Consensus        88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~q  146 (501)
T COG3845          88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQ  146 (501)
T ss_pred             cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchh
Confidence            76655554444444433322222233334455566666777777778888999986543

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.48  E-value=1.7e-14  Score=131.72  Aligned_cols=120  Identities=17%  Similarity=0.110  Sum_probs=77.1

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----h---hhcCcceeeecccc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----E---MESGRTSSVGNDIL  258 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~---~~~g~v~~~~~~~~  258 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...    .   .....++.++|...
T Consensus        34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~-Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~  112 (269)
T cd03294          34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN-RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA  112 (269)
T ss_pred             cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence            4445567777765   9999999999999999999999 9999999999987643110    0   01123445555433


Q ss_pred             CC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        259 GF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+  .++.+++..... ......   +...++.++++.+|+.++.++.+.+|||++.
T Consensus       113 ~~~~~tv~e~l~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~  166 (269)
T cd03294         113 LLPHRTVLENVAFGLEVQGVPRA---EREERAAEALELVGLEGWEHKYPDELSGGMQ  166 (269)
T ss_pred             cCCCCcHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHcCCHhHhhCCcccCCHHHH
Confidence            22  244444433211 111111   1223445566677778888999999999653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=1.5e-14  Score=132.39  Aligned_cols=116  Identities=17%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccc---cCCcc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDI---LGFDS  262 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~---~~~~~  262 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++....    .......++.++|+.   +...+
T Consensus        16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   94 (274)
T PRK13644         16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLN-GLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT   94 (274)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence            466777765   9999999999999999999999 999999999998854321    011122334444432   21124


Q ss_pred             ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+++..... ........   .+++.++++.+|+.++.++.+..|||++.
T Consensus        95 v~enl~~~~~~~~~~~~~~---~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  142 (274)
T PRK13644         95 VEEDLAFGPENLCLPPIEI---RKRVDRALAEIGLEKYRHRSPKTLSGGQG  142 (274)
T ss_pred             HHHHHHhhHHHcCCCHHHH---HHHHHHHHHHCCCHHHhcCCcccCCHHHH
Confidence            4444433211 11222222   23344566667778888999999999653

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.48  E-value=2.6e-14  Score=124.95  Aligned_cols=122  Identities=13%  Similarity=0.102  Sum_probs=88.6

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeecccc
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDIL  258 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~  258 (320)
                      ++++.|+...++++++|.   |++++++|||||||||++|+|. |+++|++|+|.+++.....  ..++||.+-....+.
T Consensus         7 ~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmIL-glle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~   85 (300)
T COG4152           7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMIL-GLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP   85 (300)
T ss_pred             cchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHh-ccCCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence            345567778889999886   9999999999999999999999 9999999999998765322  234666665443333


Q ss_pred             CCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccC
Q psy15138        259 GFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTG  309 (320)
Q Consensus       259 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG  309 (320)
                      -+.......+++....++..++.++...+++.+++   ..+..+.+.+||-
T Consensus        86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i---~~~~~~kIk~LSK  133 (300)
T COG4152          86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI---VGKKTKKIKELSK  133 (300)
T ss_pred             cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccc---cccccchHHHhhh
Confidence            33333444455555677777777777776666665   5556677778876

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=2.2e-14  Score=132.16  Aligned_cols=133  Identities=17%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hh
Q psy15138        176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HE  244 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~  244 (320)
                      ++++++++.|..... .+.+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++....       ..
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFN-ALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEECccccccchHH
Confidence            445555544431100 13467777765   9999999999999999999999 999999999999865321       01


Q ss_pred             hhcCcceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        245 MESGRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       245 ~~~g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      .....++.++|+.   +...++.+++..+.. ........   ..++.++++.+|+. ++.++.+..|||++.
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~  151 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA---KEKALKWLKKVGLSEDLISKSPFELSGGQM  151 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCChhHhhCCcccCCHHHH
Confidence            1122334444432   111244444443211 11222222   23445566667776 678999999999654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.48  E-value=4.3e-14  Score=137.51  Aligned_cols=88  Identities=26%  Similarity=0.299  Sum_probs=76.8

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCC--
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMC--   79 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~--   79 (320)
                      ....+.|||+|||++|+  |+.|++.+|.++|  ||+|++|++       +||+||+.+|+++++| +++++||+|..  
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ail--VVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAIL--VVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEE--EEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence            34568999999999999  9999999999999  999999984       8999999999999997 56899999953  


Q ss_pred             --ChhHHHHHHHHHHHhhcCCCcc
Q psy15138         80 --PPNVLQDTLKLLVRILKSPGCR  101 (320)
Q Consensus        80 --~~~~le~~l~~~~~~l~~~~~~  101 (320)
                        +++++++.++++...+...++.
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~  184 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYN  184 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCC
Confidence              5678888889998888765554

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.48  E-value=2.2e-14  Score=128.86  Aligned_cols=117  Identities=13%  Similarity=0.087  Sum_probs=73.5

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC--ccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF--DSV  263 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~--~~~  263 (320)
                      ..+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   .......++.++|....+  .++
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV   92 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence            3466666665   9999999999999999999999 999999999998754311   111123344555543222  244


Q ss_pred             cceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCcc--ccccccccccCCCC
Q psy15138        264 GNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHER--YLKTTVFGMTGHVP  312 (320)
Q Consensus       264 ~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~--~~~~~~~~LSG~~~  312 (320)
                      .+++.... ........   ..+++.++++.+|+.+  +.++.+..|||++.
T Consensus        93 ~e~l~~~~~~~~~~~~~---~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~  141 (242)
T cd03295          93 EENIALVPKLLKWPKEK---IRERADELLALVGLDPAEFADRYPHELSGGQQ  141 (242)
T ss_pred             HHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCCcHHHHhcChhhCCHHHH
Confidence            44443321 11112222   2233445556666664  78899999999654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.48  E-value=2.4e-14  Score=134.23  Aligned_cols=137  Identities=18%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccccch----
Q psy15138        173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHK----  242 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~----  242 (320)
                      ..++++++++..|....+...++++++|.   |++++|+|+||||||||+++|+ |+++|.   +|+|.+++.+..    
T Consensus        10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~-Gl~~p~~~~sG~I~~~G~~i~~~~~   88 (330)
T PRK09473         10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM-GLLAANGRIGGSATFNGREILNLPE   88 (330)
T ss_pred             CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHH-cCCCCCCCCCeEEEECCEECCcCCH
Confidence            34677777765553221234577777776   9999999999999999999999 999996   999998865411    


Q ss_pred             hh---hhcCcceeeeccccC-C---ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCc---cccccccccccCC
Q psy15138        243 HE---MESGRTSSVGNDILG-F---DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHE---RYLKTTVFGMTGH  310 (320)
Q Consensus       243 ~~---~~~g~v~~~~~~~~~-~---~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG~  310 (320)
                      ..   .+...++.++|+... +   .+..+++....  .......+..   .++.++++.+|+.   +..+++|++|||+
T Consensus        89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~---~~~~~~L~~vgL~~~~~~~~~~p~~LSgG  165 (330)
T PRK09473         89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAF---EESVRMLDAVKMPEARKRMKMYPHEFSGG  165 (330)
T ss_pred             HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence            11   112346666666421 2   22233332211  1112222222   3344445555554   3567899999997


Q ss_pred             CCC
Q psy15138        311 VPD  313 (320)
Q Consensus       311 ~~~  313 (320)
                      +..
T Consensus       166 ~~Q  168 (330)
T PRK09473        166 MRQ  168 (330)
T ss_pred             HHH
Confidence            643

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.48  E-value=1.5e-14  Score=132.50  Aligned_cols=116  Identities=21%  Similarity=0.100  Sum_probs=74.2

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhcCcceeeeccc---cCCc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMESGRTSSVGNDI---LGFD  261 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~~---~~~~  261 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++....     .......++.++|+.   +...
T Consensus        16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   94 (275)
T PRK13639         16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFN-GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP   94 (275)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence            456666665   9999999999999999999999 999999999998764321     011122344444432   1112


Q ss_pred             cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.+++..... .......   ...++.++++.+|+.++.++.+.+|||++.
T Consensus        95 tv~e~i~~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~  143 (275)
T PRK13639         95 TVEEDVAFGPLNLGLSKEE---VEKRVKEALKAVGMEGFENKPPHHLSGGQK  143 (275)
T ss_pred             cHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHCCCchhhcCChhhCCHHHH
Confidence            44444433211 1112212   223455666677778888999999999654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5.2e-14  Score=128.15  Aligned_cols=132  Identities=18%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ......
T Consensus         7 ~l~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (265)
T PRK10253          7 RLRGEQLTLGY----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASKEVAR   81 (265)
T ss_pred             EEEEEEEEEEE----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence            45555554444    334567777775   9999999999999999999999 999999999998754311   111112


Q ss_pred             cceeeeccccCC--ccccceeecCCCCC---CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDILGF--DSVGNVVNKPEHGS---LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~~~~--~~~~~~v~~~~~~~---~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.++|+...+  .+..+++.......   ..... .....++.++++.+|+.+..++.+..|||++.
T Consensus        82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~  149 (265)
T PRK10253         82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR-KEDEEAVTKAMQATGITHLADQSVDTLSGGQR  149 (265)
T ss_pred             heEEeeccCcCCCCCcHHHHHHhCcccccccccCCC-HHHHHHHHHHHHHcCCHHHhcCCcccCChHHH
Confidence            344444443222  23334443321110   00000 11223344566667778888999999999653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.47  E-value=1.9e-14  Score=136.97  Aligned_cols=120  Identities=18%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc----cc----h---hhhhcCcceeee
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF----RH----K---HEMESGRTSSVG  254 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~----~~----~---~~~~~g~v~~~~  254 (320)
                      ++....+++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.    +.    .   ...+...++.++
T Consensus        34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~-Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf  112 (382)
T TIGR03415        34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVN-GLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF  112 (382)
T ss_pred             hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence            3445556666665   9999999999999999999999 999999999999763    10    0   111123455666


Q ss_pred             ccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        255 NDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       255 ~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      |....|  .++.+++.++.. ....+..   ...++.++++.+|+.++.++++.+|||++.
T Consensus       113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~---~~~~a~e~le~vgL~~~~~~~~~~LSgGq~  170 (382)
T TIGR03415       113 QKFALMPWLTVEENVAFGLEMQGMPEAE---RRKRVDEQLELVGLAQWADKKPGELSGGMQ  170 (382)
T ss_pred             CCCcCCCCCcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            654433  245555554321 1222222   234455667777888889999999999653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.47  E-value=1.6e-14  Score=126.63  Aligned_cols=117  Identities=13%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS  262 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~  262 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+... ......++.++|+...+  .+
T Consensus        10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t   88 (208)
T cd03268          10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL-GLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT   88 (208)
T ss_pred             ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence            3334577777775   9999999999999999999999 9999999999997643211 11122344444443222  23


Q ss_pred             ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.+++....... ..     ...++.++++.+++.+..++.+..|||++.
T Consensus        89 v~e~l~~~~~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  132 (208)
T cd03268          89 ARENLRLLARLL-GI-----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMK  132 (208)
T ss_pred             HHHHHHHHHHhc-CC-----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHH
Confidence            444433221100 00     112344455666777888899999999654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.47  E-value=9.5e-15  Score=124.32  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=78.2

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSV  263 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~  263 (320)
                      ..+++.+++|.   |++++|+|||||||||+||+|+ +++.|++|.+.+++.+...  ..-++.++-.+.+.-.+  .+.
T Consensus        14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmia-tlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~   92 (245)
T COG4555          14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIA-TLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA   92 (245)
T ss_pred             HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHH-HhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence            34578888886   9999999999999999999999 9999999999998665221  11123333333221111  233


Q ss_pred             ccee-ecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        264 GNVV-NKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       264 ~~~v-~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .+++ +++....+...+++++.+++   .+.+++.+++++...++|-+.
T Consensus        93 rEnl~~Fa~L~~l~~~~~kari~~l---~k~l~l~~~~~rRv~~~S~G~  138 (245)
T COG4555          93 RENLKYFARLNGLSRKEIKARIAEL---SKRLQLLEYLDRRVGEFSTGM  138 (245)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH---HHHhChHHHHHHHHhhhchhh
Confidence            3333 44444555555555555544   445566889999999999753

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.47  E-value=2.8e-14  Score=119.79  Aligned_cols=118  Identities=16%  Similarity=0.145  Sum_probs=80.9

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccC-Cc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILG-FD  261 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~-~~  261 (320)
                      ..+++.++|.   |+.+||+|.||||||||.|+|+ |..+|++|+|.+++...      .+...+.+++|++...+. -.
T Consensus        26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMla-Gmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl  104 (267)
T COG4167          26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA-GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL  104 (267)
T ss_pred             hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHh-cccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence            4567888886   9999999999999999999999 99999999999985431      122335566665543321 11


Q ss_pred             cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCC
Q psy15138        262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHV  311 (320)
Q Consensus       262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~  311 (320)
                      ..+..+..+......+.. .++.+++.+-+.++|+ .+..+.+|..||-++
T Consensus       105 ~iGqiLd~PL~l~T~~~~-~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~Q  154 (267)
T COG4167         105 RIGQILDFPLRLNTDLEP-EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQ  154 (267)
T ss_pred             hhhhHhcchhhhcccCCh-HHHHHHHHHHHHHhccCccccccchhhcCchh
Confidence            234445555444333322 3455667777777776 577888898888754

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.47  E-value=4.7e-14  Score=127.93  Aligned_cols=129  Identities=23%  Similarity=0.187  Sum_probs=78.8

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++....   .......
T Consensus         3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (258)
T PRK13548          3 LEARNLSVRL----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-GELSPDSGEVRLNGRPLADWSPAELARR   77 (258)
T ss_pred             EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence            4455444333    334567777775   9999999999999999999999 999999999998754311   1111122


Q ss_pred             ceeeeccccC-C-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILG-F-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~-~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+... + .++.+++..... .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~  140 (258)
T PRK13548         78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAE---DDALVAAALAQVDLAHLAGRDYPQLSGGEQ  140 (258)
T ss_pred             eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHH---HHHHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence            3344443222 1 233444433211 1111111   123344566667778888999999999654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5e-14  Score=126.38  Aligned_cols=130  Identities=16%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~  247 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++....    .....
T Consensus         3 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~   77 (241)
T PRK10895          3 TLTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVV-GIVPRDAGNIIIDDEDISLLPLHARAR   77 (241)
T ss_pred             eEEEeCcEEEe----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            34555555444    334567777775   9999999999999999999999 999999999998754311    11112


Q ss_pred             CcceeeeccccCC--ccccceeecCCC-C-CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEH-G-SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~-~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++.++|....+  .++.+++..... . ......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        78 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  143 (241)
T PRK10895         78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ---REDRANELMEEFHIEHLRDSMGQSLSGGER  143 (241)
T ss_pred             hCeEEeccCCcccccCcHHHHHhhhhhcccccCHHH---HHHHHHHHHHHcCCHHHhhcchhhCCHHHH
Confidence            2344445443222  234444433211 1 111111   223344556666777778899999999653

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=3.4e-14  Score=132.71  Aligned_cols=135  Identities=17%  Similarity=0.166  Sum_probs=85.2

Q ss_pred             eeeeeeecCCCeeeee-cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------
Q psy15138        174 VLLRQRKLDNGLTGQY-LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------  242 (320)
                      .+++++++++.|.... ....+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..       
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~-Gl~~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFN-GLIKSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEECCEEccccccccc
Confidence            4678888777664211 113467777775   9999999999999999999999 999999999998753210       


Q ss_pred             ------------hhhhcCcceeeeccc--cCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccc
Q psy15138        243 ------------HEMESGRTSSVGNDI--LGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVF  305 (320)
Q Consensus       243 ------------~~~~~g~v~~~~~~~--~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~  305 (320)
                                  .......++.++|+.  ..| .++.+++.++.. .........   .++.++++.+|+. .+.++.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~  175 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KLAKFYLNKMGLDDSYLERSPF  175 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HHHHHHHHHcCCChhHhcCCcc
Confidence                        111123344444442  122 355555544321 122222222   3344556666775 57889999


Q ss_pred             cccCCCC
Q psy15138        306 GMTGHVP  312 (320)
Q Consensus       306 ~LSG~~~  312 (320)
                      +|||++.
T Consensus       176 ~LSgGqk  182 (320)
T PRK13631        176 GLSGGQK  182 (320)
T ss_pred             cCCHHHH
Confidence            9999654

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.47  E-value=2.5e-14  Score=125.16  Aligned_cols=118  Identities=13%  Similarity=-0.003  Sum_probs=72.8

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcceeeeccccCC--c
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRTSSVGNDILGF--D  261 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v~~~~~~~~~~--~  261 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++....  .......++.+++....+  .
T Consensus        11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T PRK13538         11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILA-GLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL   89 (204)
T ss_pred             ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCC
Confidence            3334567777775   9999999999999999999999 999999999998754311  011112233333332211  1


Q ss_pred             cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +..+++....... .. .   ...++.++++.+|+.++.++.+..|||++.
T Consensus        90 tv~e~l~~~~~~~-~~-~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  135 (204)
T PRK13538         90 TALENLRFYQRLH-GP-G---DDEALWEALAQVGLAGFEDVPVRQLSAGQQ  135 (204)
T ss_pred             cHHHHHHHHHHhc-Cc-c---HHHHHHHHHHHcCCHHHhhCChhhcCHHHH
Confidence            3333332221100 00 1   123344566667777778899999999653

>KOG1143|consensus

Probab=99.47  E-value=7.4e-14  Score=128.14  Aligned_cols=91  Identities=35%  Similarity=0.547  Sum_probs=84.0

Q ss_pred             CCCceEEEeCCCcchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHH
Q psy15138         12 AENAASVFETRIHERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ++.-++|||..||.+|.     .++ ..-||+++|  ||+|+.|+.+.|||||.|++||++|.+++++|+|++++..++.
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLt-gY~Ph~A~L--vVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~  323 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLT-GYTPHFACL--VVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKK  323 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecc-cCCCceEEE--EEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHH
Confidence            34569999999999999     444 556999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccccCc
Q psy15138         87 TLKLLVRILKSPGCRKVPV  105 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~  105 (320)
                      ..+++...+...+|++.|.
T Consensus       324 tv~~l~nll~~~Gc~kvp~  342 (591)
T KOG1143|consen  324 TVKDLSNLLAKAGCTKVPK  342 (591)
T ss_pred             HHHHHHHHHhhcCccccce
Confidence            9999999999999999875

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=3.2e-14  Score=133.26  Aligned_cols=135  Identities=21%  Similarity=0.216  Sum_probs=84.9

Q ss_pred             eeeeeeecCCCeeeee------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--
Q psy15138        174 VLLRQRKLDNGLTGQY------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--  242 (320)
                      .++++++++..|....      ....++++++|.   |++++|+|+||||||||+++|+ |+++|.+|+|.+++.+..  
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~-gl~~p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT-MIETPTGGELYYQGQDLLKA   82 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHH-cCCCCCCcEEEECCEEcCcC
Confidence            3566776665553211      124577888776   9999999999999999999999 999999999998764311  


Q ss_pred             ----hhhhcCcceeeeccccC-C---ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCC
Q psy15138        243 ----HEMESGRTSSVGNDILG-F---DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHV  311 (320)
Q Consensus       243 ----~~~~~g~v~~~~~~~~~-~---~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~  311 (320)
                          .....+.++.++|+... +   .+..+++.....  ......+   ..+++.++++.+|+. +.++++|++|||++
T Consensus        83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq  159 (327)
T PRK11308         83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE---RREKALAMMAKVGLRPEHYDRYPHMFSGGQ  159 (327)
T ss_pred             CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHH---HHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence                11123456666666421 2   223333322111  1122222   234455666677775 47899999999975


Q ss_pred             C
Q psy15138        312 P  312 (320)
Q Consensus       312 ~  312 (320)
                      .
T Consensus       160 ~  160 (327)
T PRK11308        160 R  160 (327)
T ss_pred             H
Confidence            4

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.47  E-value=2.3e-14  Score=126.81  Aligned_cols=117  Identities=19%  Similarity=0.084  Sum_probs=70.5

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhcCcceeeeccccCC--cc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMESGRTSSVGNDILGF--DS  262 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~g~v~~~~~~~~~~--~~  262 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   . ......++.++|....+  .+
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   91 (222)
T cd03224          13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM-GLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT   91 (222)
T ss_pred             eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence            4566776665   9999999999999999999999 999999999998754311   1 11112344444443222  23


Q ss_pred             ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+++....... ......+...++++.++  ++.+..++.+..|||++.
T Consensus        92 ~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS~G~~  138 (222)
T cd03224          92 VEENLLLGAYAR-RRAKRKARLERVYELFP--RLKERRKQLAGTLSGGEQ  138 (222)
T ss_pred             HHHHHHHHhhhc-CchhHHHHHHHHHHHHH--hhhhhhhCchhhCCHHHH
Confidence            444443322111 11111222333444332  346677899999999653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.47  E-value=1.2e-13  Score=138.53  Aligned_cols=111  Identities=24%  Similarity=0.283  Sum_probs=88.1

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      ..+.|+|+|||++|+  |+.++.++|.+++  ||++++|++++|+||+.+++.+++| ++|++||+|+++.++++...++
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL--VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~e  127 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALL--VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMF  127 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            468899999999999  9999999999999  9999999999999999999999998 9999999999998888877777


Q ss_pred             HHHhhcCCCcc-ccCccccccCCchhHHHHHHHHHHHH
Q psy15138         91 LVRILKSPGCR-KVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        91 ~~~~l~~~~~~-~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      +...+....+. ..+. +-.+.-+.+.++++...+...
T Consensus       128 i~~~l~~~~~~~~~~i-i~vSA~tG~GI~eL~~~L~~l  164 (581)
T TIGR00475       128 MKQILNSYIFLKNAKI-FKTSAKTGQGIGELKKELKNL  164 (581)
T ss_pred             HHHHHHHhCCCCCCcE-EEEeCCCCCCchhHHHHHHHH
Confidence            77776554332 2221 112335555666666655443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.47  E-value=4.3e-14  Score=127.44  Aligned_cols=129  Identities=14%  Similarity=0.057  Sum_probs=79.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----------
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----------  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----------  242 (320)
                      ++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..          
T Consensus         4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (250)
T PRK11264          4 IEVKNLVKKF----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN-LLEQPEAGTIRVGDITIDTARSLSQQKG   78 (250)
T ss_pred             EEEeceEEEE----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEccccccccchhh
Confidence            4555554443    334567777775   9999999999999999999999 999999999988754311          


Q ss_pred             -hhhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|....+  .+..+++....  ........   ..+++.++++.+|+.+..++.+++|||++.
T Consensus        79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~  150 (250)
T PRK11264         79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE---ATARARELLAKVGLAGKETSYPRRLSGGQQ  150 (250)
T ss_pred             HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence             011122344444443222  23444443211  11111111   223344556666777778899999999754

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.47  E-value=6.2e-14  Score=125.81  Aligned_cols=132  Identities=13%  Similarity=0.040  Sum_probs=80.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hh-hhcC
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HE-MESG  248 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~-~~~g  248 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++.+..   .. ....
T Consensus         3 i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (242)
T TIGR03411         3 LYLEGLSVSF----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVIT-GKTRPDEGSVLFGGTDLTGLPEHQIARA   77 (242)
T ss_pred             EEEEeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEECCeecCCCCHHHHHhc
Confidence            4555554444    334567777775   9999999999999999999999 999999999998864311   11 1112


Q ss_pred             cceeeeccccCC--ccccceeecCCCCC------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDILGF--DSVGNVVNKPEHGS------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~~~~--~~~~~~v~~~~~~~------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++..+|....+  .++.+++.......      .......+...++.++++.+|+.+..++.+..|||++.
T Consensus        78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~  149 (242)
T TIGR03411        78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQK  149 (242)
T ss_pred             CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            344444443322  24444443321100      00000012233455666677778888999999999653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=3.4e-14  Score=130.58  Aligned_cols=131  Identities=18%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME  246 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~  246 (320)
                      +++++++++.|..   ...++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..     ....
T Consensus         5 ~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~-Gl~~p~~G~i~i~g~~~~~~~~~~~~~   80 (283)
T PRK13636          5 ILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLN-GILKPSSGRILFDGKPIDYSRKGLMKL   80 (283)
T ss_pred             eEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCccEEEECCEECCCCcchHHHH
Confidence            5667766655531   23467777765   9999999999999999999999 999999999999865421     1111


Q ss_pred             cCcceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        247 SGRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       247 ~g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ...++.++|+.   +...+..+++..... ........   ..++.++++.+|+.++.++.+..|||++.
T Consensus        81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LS~G~~  147 (283)
T PRK13636         81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEV---RKRVDNALKRTGIEHLKDKPTHCLSFGQK  147 (283)
T ss_pred             HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHH---HHHHHHHHHHCCChhhhhCCcccCCHHHH
Confidence            23344444432   212344444433211 11222222   23345566667778888999999999653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=3e-14  Score=136.48  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---hhcCcceeeeccccCC--
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---MESGRTSSVGNDILGF--  260 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~~~g~v~~~~~~~~~~--  260 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    ..   .....+++++|+...|  
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~-Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~  120 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN-RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH  120 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHH-cCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence            346666665   9999999999999999999999 999999999998764311    00   1112344555543333  


Q ss_pred             ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.+++.+... ......   +..+++.++++.+|+.++.+++|.+|||++.
T Consensus       121 ~Tv~enl~~~~~~~~~~~~---~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~  170 (400)
T PRK10070        121 MTVLDNTAFGMELAGINAE---ERREKALDALRQVGLENYAHSYPDELSGGMR  170 (400)
T ss_pred             CCHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHcCCChhhhcCcccCCHHHH
Confidence            245555544321 112222   2234455667777888889999999999654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.47  E-value=4.6e-14  Score=139.72  Aligned_cols=130  Identities=17%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~  247 (320)
                      +++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    .....
T Consensus         4 ~i~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~   78 (501)
T PRK10762          4 LLQLKGIDKAF----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLT-GIYTRDAGSILYLGKEVTFNGPKSSQE   78 (501)
T ss_pred             eEEEeeeEEEe----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            35666555444    334577777775   9999999999999999999999 999999999998754311    11111


Q ss_pred             CcceeeeccccCC--ccccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++.++|....+  .++.+++..+...     ...+...   ..++.++++.+|+.+..++++..|||++.
T Consensus        79 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  147 (501)
T PRK10762         79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKM---YAEADKLLARLNLRFSSDKLVGELSIGEQ  147 (501)
T ss_pred             CCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHH---HHHHHHHHHHcCCCCCccCchhhCCHHHH
Confidence            2344444443222  2445555443211     1122222   23344566667778888999999999653

>PRK01889 GTPase RsgA; Reviewed

Probab=99.47  E-value=3.5e-13  Score=127.59  Aligned_cols=121  Identities=24%  Similarity=0.308  Sum_probs=82.9

Q ss_pred             CCccchhhhccceecCCCCch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCcccccc-
Q psy15138         33 ASPADHSMLQSKVGANAGIVG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLI-  110 (320)
Q Consensus        33 ~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~-  110 (320)
                      ++++|++++  |++++.++.+ ...+.|..|...++|++||+||+||.+.  .++..+.+...  ..++.     +... 
T Consensus       110 aANvD~vli--V~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--~~~~~~~~~~~--~~g~~-----Vi~vS  178 (356)
T PRK01889        110 AANVDTVFI--VCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--AEEKIAEVEAL--APGVP-----VLAVS  178 (356)
T ss_pred             EEeCCEEEE--EEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--HHHHHHHHHHh--CCCCc-----EEEEE
Confidence            589999988  9999877776 5556889999999999999999999764  22233334332  11121     1111 


Q ss_pred             CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138        111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL  190 (320)
Q Consensus       111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      ..+.+..++++..+                                                                  
T Consensus       179 a~~g~gl~~L~~~L------------------------------------------------------------------  192 (356)
T PRK01889        179 ALDGEGLDVLAAWL------------------------------------------------------------------  192 (356)
T ss_pred             CCCCccHHHHHHHh------------------------------------------------------------------
Confidence            12222222221111                                                                  


Q ss_pred             ceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       191 ~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                               ..|++++|+|+||+|||||++.|. |...+..|.+.....+
T Consensus       193 ---------~~g~~~~lvG~sgvGKStLin~L~-g~~~~~~G~i~~~~~~  232 (356)
T PRK01889        193 ---------SGGKTVALLGSSGVGKSTLVNALL-GEEVQKTGAVREDDSK  232 (356)
T ss_pred             ---------hcCCEEEEECCCCccHHHHHHHHH-HhcccceeeEEECCCC
Confidence                     025668999999999999999999 9999999999886543

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=5.5e-14  Score=127.22  Aligned_cols=131  Identities=17%  Similarity=0.124  Sum_probs=79.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++....   .......
T Consensus         3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (255)
T PRK11231          3 LRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQLARR   77 (255)
T ss_pred             EEEEeEEEEE----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence            4455544433    334567777765   9999999999999999999999 999999999998764311   1111122


Q ss_pred             ceeeeccccCC--ccccceeecCCCC---CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNKPEHG---SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...+  .+..+++..+...   ...... .....++.++++.+|+.++.++.+..|||++.
T Consensus        78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  144 (255)
T PRK11231         78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRRLTDLSGGQR  144 (255)
T ss_pred             eEEecccCCCCCCccHHHHHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCCcccCCHHHH
Confidence            34444443222  1344444332110   001000 11223445566667778888999999999654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=3.6e-14  Score=132.93  Aligned_cols=135  Identities=15%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC----CCceeeeccccch-----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN----GRGHARQKLFRHK-----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~----~~G~i~~~~~~~~-----  242 (320)
                      ++++++++..|........++++++|.   |++++|+|+||||||||+++|+ |+++|    ++|+|.+++.+..     
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~-Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIM-GLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCCCCcceEEEECCEECCcCCHH
Confidence            456666655443211114578888876   9999999999999999999999 99974    7899998865411     


Q ss_pred             --hhhhcCcceeeeccccC-Cc---cccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc---cccccccccccCCC
Q psy15138        243 --HEMESGRTSSVGNDILG-FD---SVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE---RYLKTTVFGMTGHV  311 (320)
Q Consensus       243 --~~~~~g~v~~~~~~~~~-~~---~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG~~  311 (320)
                        ...+...++.++|+... +.   ++++.+.....  ......+.   .+++.++++.+|+.   ...+++|++|||++
T Consensus        82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~---~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq  158 (326)
T PRK11022         82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTR---RQRAIDLLNQVGIPDPASRLDVYPHQLSGGM  158 (326)
T ss_pred             HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence              11111245566665421 21   22222221111  11222222   23344555555654   46789999999976


Q ss_pred             CC
Q psy15138        312 PD  313 (320)
Q Consensus       312 ~~  313 (320)
                      ..
T Consensus       159 ~Q  160 (326)
T PRK11022        159 SQ  160 (326)
T ss_pred             HH
Confidence            43

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.46  E-value=4.9e-14  Score=125.41  Aligned_cols=100  Identities=16%  Similarity=0.123  Sum_probs=75.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----------chhhhhcCcceeeeccccCCccccceeecCCC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----------HKHEMESGRTSSVGNDILGFDSVGNVVNKPEH  272 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----------~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~  272 (320)
                      -.+||.|+||||||||+|+|+ |+.+|+.|+|.+++.-          ..+..++||++|..+.+..+ ++.-|+.++..
T Consensus        25 GvTAlFG~SGsGKTslin~Ia-GL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~-tVrgNL~YG~~  102 (352)
T COG4148          25 GITALFGPSGSGKTSLINMIA-GLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY-TVRGNLRYGMW  102 (352)
T ss_pred             ceEEEecCCCCChhhHHHHHh-ccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce-EEecchhhhhc
Confidence            568999999999999999999 9999999999887432          34556678888877765544 45555555443


Q ss_pred             CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        273 GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..        ....+.+.++++|+++.++++|..|||+..
T Consensus       103 ~~--------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEk  134 (352)
T COG4148         103 KS--------MRAQFDQLVALLGIEHLLDRYPGTLSGGEK  134 (352)
T ss_pred             cc--------chHhHHHHHHHhCcHHHHhhCCCccCcchh
Confidence            22        223455667788889999999999999764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.46  E-value=7.3e-14  Score=122.73  Aligned_cols=108  Identities=19%  Similarity=0.083  Sum_probs=68.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeecCCCCCCCHH
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNKPEHGSLDWV  278 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  278 (320)
                      |++++|+||||||||||+++|+ |+++|++|++.+++.+... ......++.++|+...+  .+..+++...........
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~l~-gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~  102 (211)
T cd03298          24 GEITAIVGPSGSGKSTLLNLIA-GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT  102 (211)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCcc
Confidence            9999999999999999999999 9999999999987543110 01112234444443323  244454443322111111


Q ss_pred             hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                        .+...++.++++.+|+.+..++.+.+|||++.
T Consensus       103 --~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  134 (211)
T cd03298         103 --AEDRQAIEVALARVGLAGLEKRLPGELSGGER  134 (211)
T ss_pred             --HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHH
Confidence              11223445566667778888999999999653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=6.8e-14  Score=126.50  Aligned_cols=133  Identities=17%  Similarity=0.091  Sum_probs=80.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~  247 (320)
                      +++++++.+.|    +...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++....    .....
T Consensus         5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~   79 (255)
T PRK11300          5 LLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLT-GFYKPTGGTILLRGQHIEGLPGHQIAR   79 (255)
T ss_pred             eEEEeeEEEEE----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHh-CCcCCCcceEEECCEECCCCCHHHHHh
Confidence            45666655444    334567777765   9999999999999999999999 999999999998764311    11111


Q ss_pred             CcceeeeccccCC--ccccceeecCCCC--------CC-C----HHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHG--------SL-D----WVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~--------~~-~----~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+..++|+...+  .++.+++......        .. .    .....+....+.++++.+|+.+..++.+..|||++.
T Consensus        80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  159 (255)
T PRK11300         80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ  159 (255)
T ss_pred             cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence            1233334443222  2444444332110        00 0    001111223455566677888889999999999643

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.46  E-value=3.8e-14  Score=125.97  Aligned_cols=120  Identities=18%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC-----CCCCceeeeccccch-----hhhhcCcceeeecc
Q psy15138        190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL-----DNGRGHARQKLFRHK-----HEMESGRTSSVGND  256 (320)
Q Consensus       190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l-----~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~  256 (320)
                      +...++++++|.   |++++|+||||||||||+++|+ |++     +|.+|+|.+++.+..     .......++.++|+
T Consensus        11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~   89 (227)
T cd03260          11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLN-RLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK   89 (227)
T ss_pred             CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence            334567777765   9999999999999999999999 999     999999998764421     11112234444444


Q ss_pred             ccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccc--cccccCCCC
Q psy15138        257 ILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTT--VFGMTGHVP  312 (320)
Q Consensus       257 ~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~--~~~LSG~~~  312 (320)
                      ...+ .++.+++..... .......  +..+++.++++.+|+.+..++.  +.+|||++.
T Consensus        90 ~~~~~~tv~e~l~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~  147 (227)
T cd03260          90 PNPFPGSIYDNVAYGLRLHGIKLKE--ELDERVEEALRKAALWDEVKDRLHALGLSGGQQ  147 (227)
T ss_pred             chhccccHHHHHHhHHHhcCCCcHH--HHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence            3222 244444433211 1111111  1123444566666777666666  599999654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.46  E-value=6.8e-14  Score=115.26  Aligned_cols=126  Identities=17%  Similarity=0.094  Sum_probs=84.6

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-----ch-------hhhhcC
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-----HK-------HEMESG  248 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-----~~-------~~~~~g  248 (320)
                      +....|+..+.+.++.+.   |+.+.++||||+|||||+|.|+ -+.-|.+|+..+....     ..       .+...|
T Consensus         7 ~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg   85 (242)
T COG4161           7 GINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG   85 (242)
T ss_pred             ccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence            344556777777777776   9999999999999999999999 8889999999875322     11       122345


Q ss_pred             cceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        249 RTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       249 ~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      +++|.+.....+....+.+..+.. ..++..+...++.++++.   +.+.++.++.|-.|||++..
T Consensus        86 mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkr---lrl~~~adr~plhlsggqqq  148 (242)
T COG4161          86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKR---LRLKPYADRYPLHLSGGQQQ  148 (242)
T ss_pred             hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHH---hccccccccCceecccchhh
Confidence            555544333334444555544433 445555555555555554   44588999999999998754

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.46  E-value=7.4e-14  Score=128.61  Aligned_cols=84  Identities=40%  Similarity=0.565  Sum_probs=77.6

Q ss_pred             CCCceEEEeCCCcchhh--ccCC--CCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPE--ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~--~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      ++.-++|+|+-|||+|.  .+-|  ....||.+|  +|+||+|++.+|+|||.|+.++.+|+|+++||+|+++.+.+..+
T Consensus       199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglL--vVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v  276 (527)
T COG5258         199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLL--VVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGV  276 (527)
T ss_pred             cccEEEEEecCCccHHHHHHHHHHhccccceEEE--EEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHHH
Confidence            45679999999999999  3333  678999999  99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy15138         88 LKLLVRILKS   97 (320)
Q Consensus        88 l~~~~~~l~~   97 (320)
                      .+++..+|+.
T Consensus       277 ~~ei~~~Lk~  286 (527)
T COG5258         277 VEEISALLKR  286 (527)
T ss_pred             HHHHHHHHHH
Confidence            9999999885

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.46  E-value=3.1e-14  Score=126.97  Aligned_cols=106  Identities=18%  Similarity=0.118  Sum_probs=67.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcceeeeccccCCccccceeecCCC---CCCCH
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRTSSVGNDILGFDSVGNVVNKPEH---GSLDW  277 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~---~~~~~  277 (320)
                      |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....++++|.+.. +...++.+++.....   .....
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l-~~~~tv~e~l~~~~~~~~~~~~~   88 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLIS-GLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL-LPWLTVRENIALAVDRVLPDLSK   88 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCChhheEEecCccc-CCCCCHHHHHHHHHHhcccCCCH
Confidence            9999999999999999999999 999999999998754321 11123444443221 111244444433211   11122


Q ss_pred             HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        278 VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       278 ~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..   ..+++.++++.+|+.+..++.+.+|||++.
T Consensus        89 ~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  120 (230)
T TIGR01184        89 SE---RRAIVEEHIALVGLTEAADKRPGQLSGGMK  120 (230)
T ss_pred             HH---HHHHHHHHHHHcCCHHHHcCChhhCCHHHH
Confidence            22   123344566667778888999999999653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.45  E-value=9.4e-14  Score=135.07  Aligned_cols=89  Identities=25%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCCC
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMCP   80 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~   80 (320)
                      |....+.++|+|||++|+  |++|++.+|.++|  ||+|++|..       +||+||+.+|+.+++| .++++||||+.+
T Consensus        82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIl--VVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVL--IIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT  159 (447)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEE--EEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCc
Confidence            345679999999999999  9999999999999  999999843       7999999999999996 577899999874


Q ss_pred             ----hhHHHHHHHHHHHhhcCCCcc
Q psy15138         81 ----PNVLQDTLKLLVRILKSPGCR  101 (320)
Q Consensus        81 ----~~~le~~l~~~~~~l~~~~~~  101 (320)
                          .+.+++..+++...++..++.
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~  184 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYN  184 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCC
Confidence                455777888888888766654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.45  E-value=5.4e-14  Score=126.20  Aligned_cols=129  Identities=12%  Similarity=0.004  Sum_probs=79.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------h
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---------H  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---------~  243 (320)
                      ++++++.+.|    +...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..         .
T Consensus         3 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (242)
T PRK11124          3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAI   77 (242)
T ss_pred             EEEEeeEEEE----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEecccccccchhhH
Confidence            3455544443    334567777665   9999999999999999999999 999999999998764310         0


Q ss_pred             hhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        244 EMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ......++.++|....+  .++.+++....  ........   ...++.++++.+|+.+..++.+..|||++.
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  147 (242)
T PRK11124         78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ---ALARAEKLLERLRLKPYADRFPLHLSGGQQ  147 (242)
T ss_pred             HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            11122344444443322  23444442211  01111111   223455666667778888999999999653

>PLN03126 Elongation factor Tu; Provisional

Probab=99.45  E-value=7.9e-14  Score=136.31  Aligned_cols=89  Identities=24%  Similarity=0.215  Sum_probs=76.6

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChh-HHHH
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPN-VLQD   86 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~-~le~   86 (320)
                      |+...+.|+|+|||++|+  |+.|+..+|.+++  ||+|++|+++||+||+.++..+++| .++++||+|+++.+ .++.
T Consensus       141 ~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ail--VVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~  218 (478)
T PLN03126        141 TENRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLEL  218 (478)
T ss_pred             cCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHH
Confidence            356679999999999999  9999999999999  9999999999999999999999998 67889999998744 4565


Q ss_pred             HHHHHHHhhcCCCcc
Q psy15138         87 TLKLLVRILKSPGCR  101 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~  101 (320)
                      +.+++...|+..++.
T Consensus       219 i~~~i~~~l~~~g~~  233 (478)
T PLN03126        219 VELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            666888887765443

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.45  E-value=4.6e-14  Score=125.43  Aligned_cols=136  Identities=15%  Similarity=0.092  Sum_probs=79.5

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeeccccchhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFRHKHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~~~~~~~~g~  249 (320)
                      +.+.++++.+........+++++++.   |++++|+||||||||||+++|+ |+++   |++|++.+++.+.........
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~-G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAIS-GRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHh-CccCCCCCCceEEEECCEECChHHhccc
Confidence            34555555443321134567777765   9999999999999999999999 9999   999999987644221112233


Q ss_pred             ceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHH-HhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVIT-FIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~-~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...|  .++.+++..... .............++.+ .++..++.+..++.+..|||++.
T Consensus        83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  149 (226)
T cd03234          83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGER  149 (226)
T ss_pred             EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHH
Confidence            44455543222  244444433211 10000000011112223 56666667778889999998653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.45  E-value=9.8e-14  Score=126.83  Aligned_cols=133  Identities=16%  Similarity=0.144  Sum_probs=77.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS  252 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~  252 (320)
                      ++++++.+.|.   +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.........++.
T Consensus         7 l~~~~l~~~~~---~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~i~~   82 (272)
T PRK15056          7 IVVNDVTVTWR---NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALM-GFVRLASGKISILGQPTRQALQKNLVAY   82 (272)
T ss_pred             EEEEeEEEEec---CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEhHHhhccceEEE
Confidence            55555554442   123466666665   9999999999999999999999 9999999999987654221111112344


Q ss_pred             eecccc---CCc-cccceeecCCCCCCCH--HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        253 VGNDIL---GFD-SVGNVVNKPEHGSLDW--VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       253 ~~~~~~---~~~-~~~~~v~~~~~~~~~~--~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++|+..   .+. ...+++..+.......  ........++.++++.+|+.+..++++..|||++.
T Consensus        83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  148 (272)
T PRK15056         83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK  148 (272)
T ss_pred             eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHH
Confidence            444421   111 2233333221110000  00011122334555666777788999999999653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.45  E-value=3.2e-14  Score=123.91  Aligned_cols=117  Identities=15%  Similarity=0.020  Sum_probs=72.0

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--c
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--D  261 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~  261 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++.+...  ......++..+|....+  .
T Consensus        10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~   88 (198)
T TIGR01189        10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILA-GLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL   88 (198)
T ss_pred             ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCC
Confidence            3445567777775   9999999999999999999999 9999999999987543111  11112233333332212  2


Q ss_pred             cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +..+++....... .. .    ..++.++++.+++.++.++.+..|||++.
T Consensus        89 tv~~~l~~~~~~~-~~-~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  133 (198)
T TIGR01189        89 SALENLHFWAAIH-GG-A----QRTIEDALAAVGLTGFEDLPAAQLSAGQQ  133 (198)
T ss_pred             cHHHHHHHHHHHc-CC-c----HHHHHHHHHHcCCHHHhcCChhhcCHHHH
Confidence            2333332211000 00 0    12344556666777888899999999653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.45  E-value=5.3e-14  Score=127.42  Aligned_cols=123  Identities=20%  Similarity=0.091  Sum_probs=75.6

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC--
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF--  260 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~--  260 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   .......+..++|+...+  
T Consensus        11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~   89 (256)
T TIGR03873        11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA-GALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVP   89 (256)
T ss_pred             ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCC
Confidence            3344567777775   9999999999999999999999 999999999998754311   111112334444443211  


Q ss_pred             ccccceeecCCCC--CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEHG--SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.+++......  ........+...++.++++.+++.+..++.+..|||++.
T Consensus        90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  143 (256)
T TIGR03873        90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGER  143 (256)
T ss_pred             CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence            2344444332110  000000011223455666667778888999999999654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.45  E-value=5.3e-14  Score=127.07  Aligned_cols=120  Identities=16%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----------------hhhcCc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----------------EMESGR  249 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----------------~~~~g~  249 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++.....                ......
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~   88 (252)
T TIGR03005        10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILM-TLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK   88 (252)
T ss_pred             eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence            3334567777775   9999999999999999999999 9999999999987543110                011223


Q ss_pred             ceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|....+  .+..+++.....  .......   ...++.++++.+|+.+..++.+..|||++.
T Consensus        89 i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  152 (252)
T TIGR03005        89 IGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAE---AEKRAMELLDMVGLADKADHMPAQLSGGQQ  152 (252)
T ss_pred             eEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence            44444443222  233444432111  1111111   223445566667778888999999999653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.45  E-value=3.8e-13  Score=132.88  Aligned_cols=59  Identities=19%  Similarity=0.222  Sum_probs=48.7

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .++++++++..+      ..+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.
T Consensus       249 ~~i~~~~l~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~  310 (491)
T PRK10982        249 VILEVRNLTSLR------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLF-GIREKSAGTITLHGK  310 (491)
T ss_pred             cEEEEeCccccc------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHc-CCCcCCccEEEECCE
Confidence            356777776542      2367777765   9999999999999999999999 999999999998754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4e-14  Score=132.83  Aligned_cols=138  Identities=15%  Similarity=0.152  Sum_probs=80.6

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC----CCCceeeeccccch---h-
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD----NGRGHARQKLFRHK---H-  243 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~----~~~G~i~~~~~~~~---~-  243 (320)
                      ++++++++..|....+...++++++|.   |++++|+|+||||||||+++|+ |+++    |++|+|.+++.+..   . 
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~-Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIC-GVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHH-ccCCCCCCCcceEEEECCEECCcCCHH
Confidence            466676665553221234577888776   9999999999999999999999 9986    58899998754311   1 


Q ss_pred             ---hhhcCcceeeeccccC-C---ccccceeecCCC--CCCC-H-HhHHHHHHHHHHHhcccCCc---cccccccccccC
Q psy15138        244 ---EMESGRTSSVGNDILG-F---DSVGNVVNKPEH--GSLD-W-VKICERSAKVITFIDLAGHE---RYLKTTVFGMTG  309 (320)
Q Consensus       244 ---~~~~g~v~~~~~~~~~-~---~~~~~~v~~~~~--~~~~-~-~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG  309 (320)
                         ..+...++.++|+... +   .++.+.+.....  .... + ....+...++.++++.+|+.   +..+++|++|||
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence               1111235555555321 1   223333321110  0000 0 00011223445566666665   457899999999


Q ss_pred             CCCC
Q psy15138        310 HVPD  313 (320)
Q Consensus       310 ~~~~  313 (320)
                      ++..
T Consensus       162 G~~Q  165 (330)
T PRK15093        162 GECQ  165 (330)
T ss_pred             HHHH
Confidence            7643

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=7.1e-14  Score=128.41  Aligned_cols=131  Identities=13%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC---ceeeeccccch------
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR---GHARQKLFRHK------  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~---G~i~~~~~~~~------  242 (320)
                      .++++++++.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|.+   |+|.+++....      
T Consensus         5 ~l~i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~-G~~~p~~g~~G~i~i~g~~~~~~~~~~   81 (282)
T PRK13640          5 IVEFKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLIN-GLLLPDDNPNSKITVDGITLTAKTVWD   81 (282)
T ss_pred             eEEEEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh-cccCCCCCCCcEEEECCEECCcCCHHH
Confidence            35566655544211  12366666665   9999999999999999999999 9999987   89988754321      


Q ss_pred             hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        243 HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ....+|+++|.+...+...++.+++.+... ........   .+++.++++.+|+.++.++.+..|||++
T Consensus        82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~---~~~~~~~l~~~~L~~~~~~~~~~LS~G~  148 (282)
T PRK13640         82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM---IKIVRDVLADVGMLDYIDSEPANLSGGQ  148 (282)
T ss_pred             HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHH---HHHHHHHHHHCCChhHhcCCcccCCHHH
Confidence            112244544443212222345555543211 11222222   2345556667777888999999999964

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.44  E-value=5.4e-14  Score=126.66  Aligned_cols=117  Identities=18%  Similarity=0.087  Sum_probs=73.0

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch-----hhhhcCcceeeecccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK-----HEMESGRTSSVGNDIL  258 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~-----~~~~~g~v~~~~~~~~  258 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|.     +|+|.+++.+..     .......++.++|+..
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   92 (247)
T TIGR00972        14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLN-RMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN   92 (247)
T ss_pred             eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHh-ccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence            4467777765   9999999999999999999999 999998     999998754321     1111233444454432


Q ss_pred             CC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        259 GF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                      .+ .+..+++..... .. ......   ..++.++++.+|+.    +..++.+..|||++.
T Consensus        93 ~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~  150 (247)
T TIGR00972        93 PFPMSIYDNIAYGPRLHGIKDKKEL---DEIVEESLKKAALWDEVKDRLHDSALGLSGGQQ  150 (247)
T ss_pred             cCCCCHHHHHHhHHHhcCCCCHHHH---HHHHHHHHHHcCCCcchhhHhhCCcccCCHHHH
Confidence            22 233444432211 11 112222   23344555566665    678889999999653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=6e-14  Score=128.15  Aligned_cols=132  Identities=15%  Similarity=0.138  Sum_probs=82.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|..  ....+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ......
T Consensus         7 ~l~~~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~   83 (271)
T PRK13632          7 MIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT-GLLKPQSGEIKIDGITISKENLKEIRK   83 (271)
T ss_pred             EEEEEeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEecCcCCHHHHhc
Confidence            4666666555421  123456666665   9999999999999999999999 999999999998764421   111122


Q ss_pred             cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.++|+.   +...++.+++..... .......   ...++.++++.+|+.++.++.+..|||++.
T Consensus        84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  148 (271)
T PRK13632         84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKK---MKDIIDDLAKKVGMEDYLDKEPQNLSGGQK  148 (271)
T ss_pred             ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHH---HHHHHHHHHHHcCCHHHhhCCcccCCHHHH
Confidence            344445442   211244454433211 1122222   223445566667778889999999999653

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.1e-13  Score=124.25  Aligned_cols=126  Identities=15%  Similarity=0.148  Sum_probs=77.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   .......
T Consensus         4 l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   78 (241)
T PRK14250          4 IEFKEVSYSS----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN-RLIDPTEGSILIDGVDIKTIDVIDLRRK   78 (241)
T ss_pred             EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence            4455554433    334566777765   9999999999999999999999 999999999998764311   1111223


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ++..+|+...+ .++.+++....... .  ..   ..++.++++.+|+. ++.++.+..|||++.
T Consensus        79 i~~~~q~~~~~~~tv~e~l~~~~~~~-~--~~---~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  137 (241)
T PRK14250         79 IGMVFQQPHLFEGTVKDNIEYGPMLK-G--EK---NVDVEYYLSIVGLNKEYATRDVKNLSGGEA  137 (241)
T ss_pred             EEEEecCchhchhhHHHHHhcchhhc-C--cH---HHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence            44445543222 23333333221111 1  11   12344555666775 577889999999653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.3e-13  Score=136.73  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=82.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~  247 (320)
                      +++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..    .....
T Consensus         5 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~   79 (510)
T PRK09700          5 YISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLS-GIHEPTKGTITINNINYNKLDHKLAAQ   79 (510)
T ss_pred             eEEEeeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCcCCCccEEEECCEECCCCCHHHHHH
Confidence            45666655444    334567777775   9999999999999999999999 999999999998754321    11111


Q ss_pred             CcceeeeccccCC--ccccceeecCCCC---CCCH--HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHG---SLDW--VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~---~~~~--~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++.++|+...+  .++.+++..+...   ....  ....+...++.++++.+|+.+..++++++|||++.
T Consensus        80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  151 (510)
T PRK09700         80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHK  151 (510)
T ss_pred             CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence            2344444443222  2344444332210   0010  01112223455666677778888999999999653

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.44  E-value=9.6e-14  Score=131.51  Aligned_cols=111  Identities=21%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             cCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-------hhhcCcceeeeccccCC--cccc
Q psy15138        197 SQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-------EMESGRTSSVGNDILGF--DSVG  264 (320)
Q Consensus       197 ~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-------~~~~g~v~~~~~~~~~~--~~~~  264 (320)
                      +++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...       ......++.++|+...|  .++.
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia-Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA-GLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR   93 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence            44553   9999999999999999999999 9999999999987543210       01123344555554333  2455


Q ss_pred             ceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        265 NVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       265 ~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +++.++.... ...   +...++.++++.+|+.++.++.+.+|||++.
T Consensus        94 enl~~~~~~~-~~~---~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqk  137 (354)
T TIGR02142        94 GNLRYGMKRA-RPS---ERRISFERVIELLGIGHLLGRLPGRLSGGEK  137 (354)
T ss_pred             HHHHHHhhcc-Chh---HHHHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence            5554432211 111   1223445566677778889999999999653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.44  E-value=7.6e-14  Score=122.90  Aligned_cols=114  Identities=23%  Similarity=0.212  Sum_probs=71.4

Q ss_pred             ccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeec
Q psy15138        196 ESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNK  269 (320)
Q Consensus       196 ~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~  269 (320)
                      .++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...|  .+..+++..
T Consensus        15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~   93 (213)
T TIGR01277        15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIA-GFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL   93 (213)
T ss_pred             eeeEEEEeCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence            344444   9999999999999999999999 9999999999987543211 11123345555553332  244444433


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        270 PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .........  .+...++.++++.+|+.+..++.+..|||++.
T Consensus        94 ~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  134 (213)
T TIGR01277        94 GLHPGLKLN--AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQR  134 (213)
T ss_pred             HhhccCCcc--HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHH
Confidence            211111100  11123344566667778888999999999653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.44  E-value=4.9e-14  Score=142.87  Aligned_cols=135  Identities=13%  Similarity=0.123  Sum_probs=82.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----------
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----------  241 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----------  241 (320)
                      ++++++++..|........++++++|.   |++++|+||||||||||+++|+ |+++|++|.|.+++...          
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~-Gll~p~~G~i~~~g~~~~~~~~~~~~~   90 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIEL   90 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCCeEEEECCEEecccccccccc
Confidence            567777665553211124577777776   9999999999999999999999 99999999998754210          


Q ss_pred             ----h---hhhhcCcceeeeccc----cCCccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc---cccccccc
Q psy15138        242 ----K---HEMESGRTSSVGNDI----LGFDSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE---RYLKTTVF  305 (320)
Q Consensus       242 ----~---~~~~~g~v~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~  305 (320)
                          .   ...+...++.++|+.    ....++.+++..+..  ......+..   +++.++++.+|+.   +..+++++
T Consensus        91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~~  167 (623)
T PRK10261         91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM---VEAKRMLDQVRIPEAQTILSRYPH  167 (623)
T ss_pred             ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHCCCCChhhHHhCCCc
Confidence                0   011112345555543    112345555543321  122333322   3344455555663   46789999


Q ss_pred             cccCCCCC
Q psy15138        306 GMTGHVPD  313 (320)
Q Consensus       306 ~LSG~~~~  313 (320)
                      +|||++..
T Consensus       168 ~LSgGq~Q  175 (623)
T PRK10261        168 QLSGGMRQ  175 (623)
T ss_pred             cCCHHHHH
Confidence            99997543

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=1.1e-13  Score=137.17  Aligned_cols=130  Identities=16%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeeccccch----hhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKLFRHK----HEM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~~~~~----~~~  245 (320)
                      +++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|  ++|+|.+++.+..    ...
T Consensus         5 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~G~i~~~g~~~~~~~~~~~   79 (506)
T PRK13549          5 LLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLS-GVYPHGTYEGEIIFEGEELQASNIRDT   79 (506)
T ss_pred             eEEEeeeEEEe----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCCCeEEEECCEECCCCCHHHH
Confidence            46666665544    334577888776   9999999999999999999999 99986  7999998754321    111


Q ss_pred             hcCcceeeeccccCC--ccccceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        246 ESGRTSSVGNDILGF--DSVGNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ....++.++|+...+  .++.+++..+...    ......   ...++.++++.+|+.+..++++.+|||++.
T Consensus        80 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk  149 (506)
T PRK13549         80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDA---MYLRAQKLLAQLKLDINPATPVGNLGLGQQ  149 (506)
T ss_pred             HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHH---HHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence            112234444443222  2444555443211    112222   223445566667777788999999999653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.44  E-value=1.2e-13  Score=120.62  Aligned_cols=114  Identities=16%  Similarity=0.014  Sum_probs=71.1

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--c
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--D  261 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~  261 (320)
                      |+....++++++.   |++++|+|+||||||||+++|+ |+++|++|+|.+++.....  ......++.++|....+  .
T Consensus        10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~   88 (201)
T cd03231          10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILA-GLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL   88 (201)
T ss_pred             eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCc
Confidence            3334567777765   9999999999999999999999 9999999999987543111  11122334444432221  2


Q ss_pred             cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +..+++......     ..   .+++.++++.+|+.++.++.+..|||++
T Consensus        89 tv~e~l~~~~~~-----~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~  130 (201)
T cd03231          89 SVLENLRFWHAD-----HS---DEQVEEALARVGLNGFEDRPVAQLSAGQ  130 (201)
T ss_pred             CHHHHHHhhccc-----cc---HHHHHHHHHHcCChhhhcCchhhCCHHH
Confidence            333333322110     01   1233445555666777788999999854

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.44  E-value=7.1e-14  Score=123.26  Aligned_cols=129  Identities=19%  Similarity=0.049  Sum_probs=77.5

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT  250 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v  250 (320)
                      .++++++++..|    +....+++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++...........+
T Consensus        10 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~i~~~~~~~~i   84 (214)
T PRK13543         10 PLLAAHALAFSR----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLA-GLLHVESGQIQIDGKTATRGDRSRFM   84 (214)
T ss_pred             ceEEEeeEEEec----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHh-CCCCCCCeeEEECCEEccchhhhhce
Confidence            356666665544    234567777775   9999999999999999999999 99999999999875432111111223


Q ss_pred             eeeeccccCCc--cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGFD--SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+++|....+.  +..+++....... . ....   +.+.++++.+++.+..++.+..|||++.
T Consensus        85 ~~~~q~~~~~~~~t~~e~l~~~~~~~-~-~~~~---~~~~~~l~~~~l~~~~~~~~~~LS~G~~  143 (214)
T PRK13543         85 AYLGHLPGLKADLSTLENLHFLCGLH-G-RRAK---QMPGSALAIVGLAGYEDTLVRQLSAGQK  143 (214)
T ss_pred             EEeecCcccccCCcHHHHHHHHHHhc-C-CcHH---HHHHHHHHHcCChhhccCChhhCCHHHH
Confidence            34444322221  3333332211000 0 0111   2223445556667778899999999653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.44  E-value=9.8e-14  Score=137.36  Aligned_cols=130  Identities=14%  Similarity=0.077  Sum_probs=81.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~  247 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    .....
T Consensus         4 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~   78 (501)
T PRK11288          4 YLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILS-GNYQPDAGSILIDGQEMRFASTTAALA   78 (501)
T ss_pred             eEEEeeeEEEE----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEECCCCCHHHHHh
Confidence            45666555444    334567777775   9999999999999999999999 999999999998754321    11112


Q ss_pred             CcceeeeccccCC--ccccceeecCCCC---C-CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHG---S-LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~---~-~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++.++|....+  .++.+++..+...   . ......   .+++.++++.+|+.+..++.+..|||++.
T Consensus        79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgGq~  146 (501)
T PRK11288         79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL---NYEAREQLEHLGVDIDPDTPLKYLSIGQR  146 (501)
T ss_pred             CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHH---HHHHHHHHHHcCCCCCcCCchhhCCHHHH
Confidence            2344455543222  2444444433211   1 112222   23444566667777778899999999653

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.44  E-value=9.7e-14  Score=126.85  Aligned_cols=122  Identities=18%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC--------Cceeeeccccch---h---hhhcCcc
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG--------RGHARQKLFRHK---H---EMESGRT  250 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~--------~G~i~~~~~~~~---~---~~~~g~v  250 (320)
                      .|....++++++|.   |++++|+||||||||||+++|+ |+++|+        +|+|.+++....   .   ...++++
T Consensus        10 ~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~la-G~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v   88 (272)
T PRK13547         10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALA-GDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL   88 (272)
T ss_pred             EECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEe
Confidence            33445567777775   9999999999999999999999 999998        899998754311   1   1123444


Q ss_pred             eeeeccccCCccccceeecCCCCC---CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGFDSVGNVVNKPEHGS---LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +|.+...+. .++.+++.......   ..... .+..+.+.++++.+|+.+..++.+..|||++.
T Consensus        89 ~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  151 (272)
T PRK13547         89 PQAAQPAFA-FSAREIVLLGRYPHARRAGALT-HRDGEIAWQALALAGATALVGRDVTTLSGGEL  151 (272)
T ss_pred             cccCCCCCC-CcHHHHHhhcccccccccccCC-HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence            443322222 23444443322110   00000 11123344566667778888899999999653

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1e-13  Score=131.21  Aligned_cols=102  Identities=20%  Similarity=0.116  Sum_probs=68.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhhhcCcceeeeccccCC--ccccceeecCCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEMESGRTSSVGNDILGF--DSVGNVVNKPEH  272 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~  272 (320)
                      |++++|+||||||||||+++|+ |+++|++|+|.+++....       .......++.++|+...|  .++.+++.++..
T Consensus        24 Ge~~~l~G~nGsGKSTLl~~ia-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  102 (352)
T PRK11144         24 QGITAIFGRSGAGKTSLINAIS-GLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA  102 (352)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence            9999999999999999999999 999999999998754311       011123345555554333  244444443221


Q ss_pred             CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        273 GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                           .   ...+++.++++.+|+.+..++.+.+|||++.
T Consensus       103 -----~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  134 (352)
T PRK11144        103 -----K---SMVAQFDKIVALLGIEPLLDRYPGSLSGGEK  134 (352)
T ss_pred             -----h---hhHHHHHHHHHHcCCchhhhCCcccCCHHHH
Confidence                 0   1123445566667778889999999999653

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=1.1e-13  Score=123.59  Aligned_cols=108  Identities=22%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeecCCCCCCCHH
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNKPEHGSLDWV  278 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  278 (320)
                      |++++|+||||||||||+++|+ |+++|.+|++.+++.+... ......++.++|....+  .+..+++...........
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  103 (232)
T PRK10771         25 GERVAILGPSGAGKSTLLNLIA-GFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN  103 (232)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence            9999999999999999999999 9999999999987643211 00112234444443222  244444433221111111


Q ss_pred             hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                        .....++.++++.+|+.++.++.+..|||++.
T Consensus       104 --~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  135 (232)
T PRK10771        104 --AAQREKLHAIARQMGIEDLLARLPGQLSGGQR  135 (232)
T ss_pred             --HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHH
Confidence              11234455667777888889999999999654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.43  E-value=4.9e-14  Score=128.45  Aligned_cols=134  Identities=18%  Similarity=0.173  Sum_probs=78.8

Q ss_pred             eeeeeecCCCeeee-----ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h
Q psy15138        175 LLRQRKLDNGLTGQ-----YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H  243 (320)
Q Consensus       175 ~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~  243 (320)
                      +++++++++.|...     .+...+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..   .
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA-GMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHh-CCCCCCCCEEEECCEECCCCch
Confidence            35666665544210     0123467777775   9999999999999999999999 999999999998754321   1


Q ss_pred             hhhcCcceeeecccc--CC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCCC
Q psy15138        244 EMESGRTSSVGNDIL--GF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~--~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~~  312 (320)
                      ......++.++|+..  .+  .+..+++.....  .......   ..+++.++++.+|+ .+..++.+..|||++.
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  155 (267)
T PRK15112         83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ---REKQIIETLRQVGLLPDHASYYPHMLAPGQK  155 (267)
T ss_pred             hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHH---HHHHHHHHHHHcCCChHHHhcCchhcCHHHH
Confidence            111123444444421  11  122223222111  1111111   22344556666777 3667888999999654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.43  E-value=1.3e-13  Score=136.11  Aligned_cols=127  Identities=17%  Similarity=0.059  Sum_probs=78.6

Q ss_pred             eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccc
Q psy15138        185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDI  257 (320)
Q Consensus       185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~  257 (320)
                      +...|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    .......++.++|+.
T Consensus         4 l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   82 (491)
T PRK10982          4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF-GIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL   82 (491)
T ss_pred             eEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence            34445445677777776   9999999999999999999999 999999999998764311    111122344444443


Q ss_pred             cCC--ccccceeecCCCCCCCH-HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        258 LGF--DSVGNVVNKPEHGSLDW-VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       258 ~~~--~~~~~~v~~~~~~~~~~-~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+  .++.+++..+....... ....+..+++.++++.+|+.+..++.+.+|||++.
T Consensus        83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~  140 (491)
T PRK10982         83 NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQM  140 (491)
T ss_pred             ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHH
Confidence            222  34445544332110010 01111223444556666777778899999999653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=8.6e-14  Score=127.53  Aligned_cols=133  Identities=12%  Similarity=0.059  Sum_probs=82.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h---hh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H---EM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~---~~  245 (320)
                      +++++++++.|... ....+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..   .   ..
T Consensus         4 ~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~i~~~~~~~~~~   81 (277)
T PRK13642          4 ILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLID-GLFEEFEGKVKIDGELLTAENVWNLRR   81 (277)
T ss_pred             eEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCCEEEECCEECCcCCHHHHhc
Confidence            45667666555321 112356666665   9999999999999999999999 999999999998754321   1   11


Q ss_pred             hcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        246 ESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+++++|.++..+...++.+++..... ........   .+++.++++.+|+.++.++.+..|||++.
T Consensus        82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  146 (277)
T PRK13642         82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEM---IKRVDEALLAVNMLDFKTREPARLSGGQK  146 (277)
T ss_pred             ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHH---HHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence            234444443211222344555543221 11222222   23344556667777888999999999653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.43  E-value=6.5e-14  Score=127.48  Aligned_cols=117  Identities=18%  Similarity=0.180  Sum_probs=73.4

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-h--hhcCcceeeeccc---c-
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-E--MESGRTSSVGNDI---L-  258 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~--~~~g~v~~~~~~~---~-  258 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   . .  .....++.++|+.   + 
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~  102 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLL-GLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN  102 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence            4567777775   9999999999999999999999 999999999998754311   1 0  1122345555543   1 


Q ss_pred             CCccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        259 GFDSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ...++.+++.....  .......   ...++.++++.+|+. ...++.+.+|||++.
T Consensus       103 ~~~tv~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~  156 (265)
T TIGR02769       103 PRMTVRQIIGEPLRHLTSLDESE---QKARIAELLDMVGLRSEDADKLPRQLSGGQL  156 (265)
T ss_pred             CCCCHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence            11233343322111  1111111   223445566666775 577889999999653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.43  E-value=1.1e-13  Score=123.09  Aligned_cols=129  Identities=17%  Similarity=0.086  Sum_probs=78.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++...   .......
T Consensus         7 ~i~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (225)
T PRK10247          7 LLQLQNVGYLA----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA-SLISPTSGTLLFEGEDISTLKPEIYRQ   81 (225)
T ss_pred             eEEEeccEEee----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCeEEECCEEcCcCCHHHHHh
Confidence            45666665444    334567777775   9999999999999999999999 99999999999875431   1111123


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      .++.++|....+ .+..+++....... ....   ...++.++++.+|+. ...++.+..|||++.
T Consensus        82 ~i~~~~q~~~l~~~tv~enl~~~~~~~-~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  143 (225)
T PRK10247         82 QVSYCAQTPTLFGDTVYDNLIFPWQIR-NQQP---DPAIFLDDLERFALPDTILTKNIAELSGGEK  143 (225)
T ss_pred             ccEEEecccccccccHHHHHHhHHhhc-CCCh---HHHHHHHHHHHcCCChHHhcCCcccCCHHHH
Confidence            344455543322 23334333211100 0001   112344566666774 467899999999643

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.42  E-value=1.2e-13  Score=125.13  Aligned_cols=129  Identities=12%  Similarity=0.070  Sum_probs=79.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----------
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----------  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----------  242 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++....          
T Consensus         6 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (257)
T PRK10619          6 LNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNGQTINLVRDKDGQLK   80 (257)
T ss_pred             EEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEcccccccccccc
Confidence            4555554444    334567777765   9999999999999999999999 999999999998754311          


Q ss_pred             ------hhhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCcccc-ccccccccCCC
Q psy15138        243 ------HEMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYL-KTTVFGMTGHV  311 (320)
Q Consensus       243 ------~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~-~~~~~~LSG~~  311 (320)
                            .......++.++|+...+  .++.+++....  ........   ...++.++++.+|+.+.. ++.+.+|||++
T Consensus        81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~  157 (257)
T PRK10619         81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQE---ARERAVKYLAKVGIDERAQGKYPVHLSGGQ  157 (257)
T ss_pred             cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence                  011122344445543332  23444443211  11112222   223444566667777654 78899999965


Q ss_pred             C
Q psy15138        312 P  312 (320)
Q Consensus       312 ~  312 (320)
                      .
T Consensus       158 ~  158 (257)
T PRK10619        158 Q  158 (257)
T ss_pred             H
Confidence            4

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.42  E-value=8.8e-14  Score=141.26  Aligned_cols=95  Identities=19%  Similarity=0.137  Sum_probs=69.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|....+  .++++.++.   |+++||+|+||||||||+|+|. |+++|.+|+|++++.+.   .....+.
T Consensus       471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~-gly~p~~G~I~~dg~dl~~i~~~~lR~  547 (709)
T COG2274         471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL-GLYKPQQGRILLDGVDLNDIDLASLRR  547 (709)
T ss_pred             eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEeHHhcCHHHHHh
Confidence            3567777766655422  567776665   9999999999999999999999 99999999999986652   2223345


Q ss_pred             cceeeeccccCC-ccccceeecCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEH  272 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~  272 (320)
                      .++.+.|+...| .+..+++..+..
T Consensus       548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p  572 (709)
T COG2274         548 QVGYVLQDPFLFSGSIRENIALGNP  572 (709)
T ss_pred             heeEEcccchhhcCcHHHHHhcCCC
Confidence            566666666554 456677666544

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=1.3e-13  Score=125.72  Aligned_cols=132  Identities=11%  Similarity=0.031  Sum_probs=79.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++.+.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++....   ......
T Consensus         7 ~l~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~   83 (269)
T PRK13648          7 IIVFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMI-GIEKVKSGEIFYNNQAITDDNFEKLRK   83 (269)
T ss_pred             eEEEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHHh
Confidence            46677666555321  12356666664   9999999999999999999999 999999999998764321   111122


Q ss_pred             cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.++|+.   +...+..+++..... ........   ..++.++++.+|+.+..++.+..|||++.
T Consensus        84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  148 (269)
T PRK13648         84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEM---HRRVSEALKQVDMLERADYEPNALSGGQK  148 (269)
T ss_pred             heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHH---HHHHHHHHHHcCCchhhhCCcccCCHHHH
Confidence            334444432   111222333332211 11122222   23344556667777788899999999653

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=9e-14  Score=127.54  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-------hhhcCcceeeeccc---cC
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-------EMESGRTSSVGNDI---LG  259 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-------~~~~g~v~~~~~~~---~~  259 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...       ......++.++|..   +.
T Consensus        21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~   99 (280)
T PRK13649         21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLN-GLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF   99 (280)
T ss_pred             ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence            356666665   9999999999999999999999 9999999999987543110       11112334444442   11


Q ss_pred             CccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        260 FDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       260 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ..++.+++..... .........   .++.++++.+|+. ...++.+.+|||++.
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  151 (280)
T PRK13649        100 EETVLKDVAFGPQNFGVSQEEAE---ALAREKLALVGISESLFEKNPFELSGGQM  151 (280)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence            1244444432211 111222222   2334555566776 467889999999654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.42  E-value=4.4e-14  Score=137.39  Aligned_cols=139  Identities=18%  Similarity=0.218  Sum_probs=92.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC----Cceeeecccc-------
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG----RGHARQKLFR-------  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~----~G~i~~~~~~-------  240 (320)
                      +++++|+...|........++++++|.   ||++||+|.|||||||+.+.|. |++++.    +|+|.+++.+       
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~-gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALM-GLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHh-ccCCCCCcccceEEEECCcchhcCCHH
Confidence            667777665554433335688888887   9999999999999999999999 999987    7999888653       


Q ss_pred             chhhhhcCcceeeeccccC-Ccc---ccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCcccc--ccccccccCCCC
Q psy15138        241 HKHEMESGRTSSVGNDILG-FDS---VGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYL--KTTVFGMTGHVP  312 (320)
Q Consensus       241 ~~~~~~~g~v~~~~~~~~~-~~~---~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~--~~~~~~LSG~~~  312 (320)
                      .....+-..++.+||+.+. +++   .++.+.....  ....+.   +..++++++++.+|+.+..  +++|++|||++.
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~---ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r  160 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA---EARKRAVELLEQVGLPDPERRDRYPHQLSGGMR  160 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHH---HHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence            1122233556777777654 333   2333332221  112233   3445566677777776544  459999999876


Q ss_pred             CEEEE
Q psy15138        313 DFGML  317 (320)
Q Consensus       313 ~~~~l  317 (320)
                      ..+|+
T Consensus       161 QRv~i  165 (539)
T COG1123         161 QRVMI  165 (539)
T ss_pred             HHHHH
Confidence            65543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.42  E-value=2.2e-13  Score=135.18  Aligned_cols=127  Identities=18%  Similarity=0.089  Sum_probs=81.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~  247 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    .....
T Consensus        11 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   85 (510)
T PRK15439         11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIA-GIVPPDSGTLEIGGNPCARLTPAKAHQ   85 (510)
T ss_pred             eEEEEeEEEEe----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHHHh
Confidence            46666665444    334567777775   9999999999999999999999 999999999998754311    11111


Q ss_pred             CcceeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++.++|+...+  .++.+++......   ...   ..+++.++++.+|+.++.++++..|||++.
T Consensus        86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  146 (510)
T PRK15439         86 LGIYLVPQEPLLFPNLSVKENILFGLPK---RQA---SMQKMKQLLAALGCQLDLDSSAGSLEVADR  146 (510)
T ss_pred             CCEEEEeccCccCCCCcHHHHhhccccc---chH---HHHHHHHHHHHcCCCccccCChhhCCHHHH
Confidence            2234444443222  2444444433211   111   223445566667778888999999999653

>PRK12736 elongation factor Tu; Reviewed

Probab=99.42  E-value=4e-13  Score=129.05  Aligned_cols=87  Identities=22%  Similarity=0.256  Sum_probs=73.3

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~~   87 (320)
                      ....+.|+|+|||++|+  |+.|+..+|.+++  ||++++|+++||++|+.+++.+++| .++++||+|+.+ .+.++.+
T Consensus        73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~ll--Vvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i  150 (394)
T PRK12736         73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELV  150 (394)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHH
Confidence            44568999999999999  9999999999999  9999999999999999999999998 578899999984 3445545


Q ss_pred             HHHHHHhhcCCCc
Q psy15138         88 LKLLVRILKSPGC  100 (320)
Q Consensus        88 l~~~~~~l~~~~~  100 (320)
                      .+++...+....+
T Consensus       151 ~~~i~~~l~~~~~  163 (394)
T PRK12736        151 EMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHHhCC
Confidence            5677777665444

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.42  E-value=1.7e-13  Score=119.52  Aligned_cols=123  Identities=16%  Similarity=0.031  Sum_probs=74.9

Q ss_pred             eeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcce
Q psy15138        177 RQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTS  251 (320)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~  251 (320)
                      +++++++.|    ....+++++++.   |++++|+||||||||||+++|+ |+++|++|++.+++.+...  ......++
T Consensus         3 ~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~v~~~g~~~~~~~~~~~~~i~   77 (200)
T PRK13540          3 DVIELDFDY----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIA-GLLNPEKGEILFERQSIKKDLCTYQKQLC   77 (200)
T ss_pred             EEEEEEEEe----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeeEEECCCccccCHHHHHhheE
Confidence            445444433    334567777765   9999999999999999999999 9999999999987643211  11122344


Q ss_pred             eeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        252 SVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       252 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .++|....+  .++.+++.......  .  ..   ..+.++++..++.+..++++..|||++
T Consensus        78 ~~~q~~~~~~~~tv~~~~~~~~~~~--~--~~---~~~~~~l~~~~l~~~~~~~~~~LS~G~  132 (200)
T PRK13540         78 FVGHRSGINPYLTLRENCLYDIHFS--P--GA---VGITELCRLFSLEHLIDYPCGLLSSGQ  132 (200)
T ss_pred             EeccccccCcCCCHHHHHHHHHhcC--c--ch---HHHHHHHHHcCCchhhhCChhhcCHHH
Confidence            444432221  23344433321110  0  11   233445555566666788889999864

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.42  E-value=1.2e-13  Score=123.66  Aligned_cols=119  Identities=18%  Similarity=0.142  Sum_probs=75.1

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCCc--c
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGFD--S  262 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~~--~  262 (320)
                      |....+++++++.   |++++|+||||||||||+++|+ |+++|.+|++.+++..... ......++.+++....|.  +
T Consensus        10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t   88 (237)
T TIGR00968        10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIA-GLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLT   88 (237)
T ss_pred             ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCc
Confidence            3334567777765   9999999999999999999999 9999999999887543111 111233445554433332  3


Q ss_pred             ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..+++..... .......   ..+++.++++..++.++.++.+..||+++
T Consensus        89 ~~enl~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~lS~G~  135 (237)
T TIGR00968        89 VRDNIAFGLEIRKHPKAK---IKARVEELLELVQLEGLGDRYPNQLSGGQ  135 (237)
T ss_pred             HHHHHHhHHHhcCCCHHH---HHHHHHHHHHHcCCHhHhhCChhhCCHHH
Confidence            3444433211 1111111   12344556666677778889999999965

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.41  E-value=8.4e-14  Score=122.15  Aligned_cols=125  Identities=14%  Similarity=0.026  Sum_probs=75.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS  252 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~  252 (320)
                      ++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++...........++.
T Consensus         3 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (207)
T PRK13539          3 LEGEDLACVR----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIA-GLLPPAAGTIKLDGGDIDDPDVAEACHY   77 (207)
T ss_pred             EEEEeEEEEE----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEeCcchhhHhhcEE
Confidence            4555554443    334567777775   9999999999999999999999 9999999999987543111001112233


Q ss_pred             eeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        253 VGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       253 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +++....+  .+..+++...... ...     ...++.++++.+|+.+..++++..|||++
T Consensus        78 ~~~~~~~~~~~tv~~~l~~~~~~-~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  132 (207)
T PRK13539         78 LGHRNAMKPALTVAENLEFWAAF-LGG-----EELDIAAALEAVGLAPLAHLPFGYLSAGQ  132 (207)
T ss_pred             ecCCCcCCCCCcHHHHHHHHHHh-cCC-----cHHHHHHHHHHcCCHHHHcCChhhcCHHH
Confidence            33322211  2333333221100 000     01224456666677777788999999964

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.41  E-value=8.3e-14  Score=123.49  Aligned_cols=113  Identities=14%  Similarity=0.103  Sum_probs=71.2

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC--ccccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVGN  265 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~  265 (320)
                      ...++++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+.... ....+...+|+...+  .+..+
T Consensus        12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~~~~~~~~-~~~~~~~~~q~~~~~~~~t~~~   89 (223)
T TIGR03740        12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMIT-GILRPTSGEIIFDGHPWTRK-DLHKIGSLIESPPLYENLTARE   89 (223)
T ss_pred             CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEecccc-ccccEEEEcCCCCccccCCHHH
Confidence            34566776665   9999999999999999999999 99999999999875432111 111233444432222  23333


Q ss_pred             eeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        266 VVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++..... ....       ..++.++++.+|+.+..++.+..|||++.
T Consensus        90 ~~~~~~~~~~~~-------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  130 (223)
T TIGR03740        90 NLKVHTTLLGLP-------DSRIDEVLNIVDLTNTGKKKAKQFSLGMK  130 (223)
T ss_pred             HHHHHHHHcCCC-------HHHHHHHHHHcCCcHHHhhhHhhCCHHHH
Confidence            3322110 0111       12344556667778888999999998653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.41  E-value=2.7e-13  Score=123.76  Aligned_cols=133  Identities=14%  Similarity=0.047  Sum_probs=80.1

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch---
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---  242 (320)
                      ..++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++     |++|++.+++.+..   
T Consensus        12 ~~l~i~nl~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~p~~G~v~~~g~~i~~~~   86 (269)
T PRK14259         12 IIISLQNVTISY----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN-RMNDLIEGCSLKGRVLFDGTDLYDPR   86 (269)
T ss_pred             ceEEEEeEEEEE----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEEccccc
Confidence            356777665544    334567777775   9999999999999999999999 9987     58999998754311   


Q ss_pred             --hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                        .......++.++|+...| .++.+++..... .... ....+...++++.+++. ++.+..++.+..|||++.
T Consensus        87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  160 (269)
T PRK14259         87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQ  160 (269)
T ss_pred             CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHH
Confidence              111122344555543322 244444433221 1111 11223334444554442 234567889999999653

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.41  E-value=1.6e-13  Score=136.75  Aligned_cols=91  Identities=29%  Similarity=0.316  Sum_probs=69.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRT  250 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v  250 (320)
                      ++++++++.|...   .+++++++++   |++++|+||||||||||+++|. |+++|++|+|.+++.+..  .+..+..+
T Consensus       335 I~~~~vsf~Y~~~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~~~p~~G~I~i~g~~i~~~~~~lr~~i  410 (529)
T TIGR02868       335 LELRDLSFGYPGS---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT-GLLDPLQGEVTLDGVSVSSLQDELRRRI  410 (529)
T ss_pred             EEEEEEEEecCCC---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence            5667776666432   2467777775   9999999999999999999999 999999999999864411  33345567


Q ss_pred             eeeeccccCC-ccccceeecC
Q psy15138        251 SSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       251 ~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      +.++|+...| .+..+|+..+
T Consensus       411 ~~V~Q~~~lF~~TI~eNI~~g  431 (529)
T TIGR02868       411 SVFAQDAHLFDTTVRDNLRLG  431 (529)
T ss_pred             EEEccCcccccccHHHHHhcc
Confidence            7788887766 5667777664

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.41  E-value=3e-13  Score=122.75  Aligned_cols=135  Identities=16%  Similarity=0.091  Sum_probs=79.6

Q ss_pred             eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch--
Q psy15138        173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK--  242 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~--  242 (320)
                      ...++++++.+.|.    ...+++++++.   |++++|+||||||||||+++|+ |+++     |++|+|.+++.+..  
T Consensus        11 ~~~l~~~~l~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~p~~p~~G~i~~~g~~~~~~   85 (260)
T PRK10744         11 PSKIQVRNLNFYYG----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN-RMYELYPEQRAEGEILLDGENILTP   85 (260)
T ss_pred             CceEEEEEEEEEeC----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cccccCCCCCcceEEEECCEEcccc
Confidence            34567776665553    23467777765   9999999999999999999999 9986     47999998754321  


Q ss_pred             ---hhhhcCcceeeeccccCC-ccccceeecCCC--CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 ---HEMESGRTSSVGNDILGF-DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ---~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                         .......++.++|+...+ .++.+++.....  .........++..++++.+++. ++.+..++.+.+|||++.
T Consensus        86 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  162 (260)
T PRK10744         86 KQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ  162 (260)
T ss_pred             ccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence               111123445555543322 233444433211  1122222223334444444331 123567888999999653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.41  E-value=1e-13  Score=124.11  Aligned_cols=120  Identities=19%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeecc-ccCC--
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGND-ILGF--  260 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~-~~~~--  260 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.....  ......++.++++ ...+  
T Consensus        31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  109 (236)
T cd03267          31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILS-GLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD  109 (236)
T ss_pred             cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence            3445577777775   9999999999999999999999 9999999999987543111  1112233444322 1111  


Q ss_pred             ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+..+++..... ......+.   ..++.++++.+|+.+..++.+..|||++.
T Consensus       110 ~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  159 (236)
T cd03267         110 LPVIDSFYLLAAIYDLPPARF---KKRLDELSELLDLEELLDTPVRQLSLGQR  159 (236)
T ss_pred             CcHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence            233333322111 11122222   22334555666777888899999999654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.41  E-value=1.7e-13  Score=122.34  Aligned_cols=120  Identities=16%  Similarity=0.079  Sum_probs=74.8

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS  262 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~  262 (320)
                      ++...++++.++.   |++++|+||||||||||+++|+ |.++|.+|++.+++.+... ......+..++|+...|  .+
T Consensus        10 ~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t   88 (232)
T cd03300          10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA-GFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT   88 (232)
T ss_pred             eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence            3334567777765   9999999999999999999999 9999999999987543211 01112334444443332  13


Q ss_pred             ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+++..... .......   ...++.+.++.+|+.+..++.+..|||++.
T Consensus        89 ~~~nl~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~  136 (232)
T cd03300          89 VFENIAFGLRLKKLPKAE---IKERVAEALDLVQLEGYANRKPSQLSGGQQ  136 (232)
T ss_pred             HHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            3333332211 1111111   123344556667778888999999999653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.41  E-value=2.7e-13  Score=123.19  Aligned_cols=132  Identities=20%  Similarity=0.219  Sum_probs=80.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccccch------
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHK------  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~------  242 (320)
                      ++++.++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|+   +|+|.+++....      
T Consensus         4 ~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~p~~~~~G~i~~~g~~~~~~~~~~   78 (262)
T PRK09984          4 IIRVEKLAKTF----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLS-GLITGDKSAGSHIELLGRTVQREGRLA   78 (262)
T ss_pred             EEEEeeEEEEe----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHh-ccCCCCCCCceEEEECCEecccccccc
Confidence            45666555444    334567777765   9999999999999999999999 999886   499998764321      


Q ss_pred             --hhhhcCcceeeeccccCC--ccccceeecCCCCC-------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        243 --HEMESGRTSSVGNDILGF--DSVGNVVNKPEHGS-------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       243 --~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~-------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                        .......++.++|....+  .++.+++.......       ..+.. .+...++.++++.+|+.+..++.+.+|||++
T Consensus        79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  157 (262)
T PRK09984         79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFT-REQKQRALQALTRVGMVHFAHQRVSTLSGGQ  157 (262)
T ss_pred             hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhccccc-HHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence              111122344444443222  23444443321100       00001 1122345566666777778899999999965


Q ss_pred             C
Q psy15138        312 P  312 (320)
Q Consensus       312 ~  312 (320)
                      .
T Consensus       158 ~  158 (262)
T PRK09984        158 Q  158 (262)
T ss_pred             H
Confidence            3

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.40  E-value=2.7e-13  Score=122.32  Aligned_cols=129  Identities=16%  Similarity=0.027  Sum_probs=76.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---hh
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---HE  244 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---~~  244 (320)
                      ++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|     .+|+|.+++.+..   ..
T Consensus         4 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~i~~~~~~   78 (250)
T PRK14247          4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEARVSGEVYLDGQDIFKMDVI   78 (250)
T ss_pred             EEEEeeEEEE----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCCCCceEEEECCEECCcCCHH
Confidence            4555554433    334567777765   9999999999999999999999 99974     6999998764311   11


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCCC-CCC--CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSL--DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~--~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                      .....++.++|+...+  .++.+++..... ...  ...+.   .+++.++++.+|+.    +..++.+.+|||++.
T Consensus        79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~  152 (250)
T PRK14247         79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL---QERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQ  152 (250)
T ss_pred             HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHH---HHHHHHHHHHcCCCcchhhhhcCCcccCCHHHH
Confidence            1122344455543222  244444433211 111  11222   23344455555553    457889999999653

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=2.6e-13  Score=121.39  Aligned_cols=130  Identities=17%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~  247 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++....   . ....
T Consensus         5 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~   79 (237)
T PRK11614          5 MLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLC-GDPRATSGRIVFDGKDITDWQTAKIMR   79 (237)
T ss_pred             EEEEEeEEEee----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCceEEECCEecCCCCHHHHHH
Confidence            45666665544    234567777765   9999999999999999999999 999999999998764311   1 1112


Q ss_pred             CcceeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++.++|+...|  .++.+++....... ......+...++++.++  ++.+..++.+..|||++.
T Consensus        80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS~G~~  143 (237)
T PRK11614         80 EAVAIVPEGRRVFSRMTVEENLAMGGFFA-ERDQFQERIKWVYELFP--RLHERRIQRAGTMSGGEQ  143 (237)
T ss_pred             hCEEEeccCcccCCCCcHHHHHHHhhhcc-ChhHHHHHHHHHHHHHH--HHHHHHhCchhhCCHHHH
Confidence            2344444443323  23444443321111 11112222333334331  245566788999999643

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.40  E-value=2e-13  Score=121.60  Aligned_cols=119  Identities=16%  Similarity=0.074  Sum_probs=71.0

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhcCcceeeeccccCC-
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMESGRTSSVGNDILGF-  260 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~g~v~~~~~~~~~~-  260 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..   . ......++..+|+...| 
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~   88 (230)
T TIGR03410        10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLM-GLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP   88 (230)
T ss_pred             eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence            3334577777776   9999999999999999999999 999999999998754311   1 11112234444443222 


Q ss_pred             -ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        261 -DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       261 -~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                       .+..+++....... .. ...+...++++.++.  +.+..++.+..|||++.
T Consensus        89 ~~tv~~~l~~~~~~~-~~-~~~~~~~~~l~~~~~--l~~~~~~~~~~LS~G~~  137 (230)
T TIGR03410        89 RLTVEENLLTGLAAL-PR-RSRKIPDEIYELFPV--LKEMLGRRGGDLSGGQQ  137 (230)
T ss_pred             CCcHHHHHHHHHHhc-Cc-chHHHHHHHHHHHHh--HHHHhhCChhhCCHHHH
Confidence             23344433221111 00 111222334443331  35667889999999653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.40  E-value=5.8e-13  Score=115.81  Aligned_cols=87  Identities=26%  Similarity=0.285  Sum_probs=73.8

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~~   87 (320)
                      ....+.|+|+|||.+|.  +..+...+|.+++  ||++.+|+.+++++|+.++..+++| .++++||+|+.. .+.++..
T Consensus        63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~il--Vvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~  140 (195)
T cd01884          63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAIL--VVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELV  140 (195)
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHH
Confidence            34568999999999999  8999999999999  9999999999999999999999997 678899999964 4445556


Q ss_pred             HHHHHHhhcCCCc
Q psy15138         88 LKLLVRILKSPGC  100 (320)
Q Consensus        88 l~~~~~~l~~~~~  100 (320)
                      .+++...|+..++
T Consensus       141 ~~~i~~~l~~~g~  153 (195)
T cd01884         141 EMEVRELLSKYGF  153 (195)
T ss_pred             HHHHHHHHHHhcc
Confidence            6778877765444

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.39  E-value=2.4e-13  Score=123.30  Aligned_cols=129  Identities=16%  Similarity=0.019  Sum_probs=75.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK-----  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~-----  242 (320)
                      +++.++++.|    +...+++++++.   |++++|+||||||||||+++|+ |+++|     ++|+|.+++.+..     
T Consensus         5 l~i~~v~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~la-Gl~~~~~~~~~~G~I~~~g~~~~~~~~~   79 (258)
T PRK14241          5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLN-RMHEVIPGARVEGEVLLDGEDLYGPGVD   79 (258)
T ss_pred             EEEeeEEEEE----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-ccCCcccCCCcceEEEECCEeccccccC
Confidence            4555554443    334567777765   9999999999999999999999 99974     6999998754321     


Q ss_pred             hhhhcCcceeeeccccCC--ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138        243 HEMESGRTSSVGNDILGF--DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~  312 (320)
                      .......++.++|....+  .++.+++..... .. .......+.+.   ++++.+|+    .+..++.+.+|||++.
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~~~~LS~G~~  154 (258)
T PRK14241         80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVE---KSLRGANLWNEVKDRLDKPGGGLSGGQQ  154 (258)
T ss_pred             hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHH---HHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence            111122344445443222  234444432211 11 11222222333   34444444    3567889999999653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.39  E-value=2.2e-13  Score=123.46  Aligned_cols=130  Identities=18%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-----ch---h
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-----HK---H  243 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-----~~---~  243 (320)
                      +++++++.+.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+     ..   .
T Consensus         6 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~i~~~~~   80 (258)
T PRK11701          6 LLSVRGLTKLYG----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALS-ARLAPDAGEVHYRMRDGQLRDLYALSE   80 (258)
T ss_pred             eEEEeeeEEEcC----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCccccccccccCCH
Confidence            466666655442    23466666665   9999999999999999999999 9999999999987643     11   1


Q ss_pred             hh----hcCcceeeecccc-C-C--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        244 EM----ESGRTSSVGNDIL-G-F--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~----~~g~v~~~~~~~~-~-~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      ..    ....++.++|+.. . +  .+..+++....  ........   ...++.++++.+++. ...++.+..|||++.
T Consensus        81 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~  157 (258)
T PRK11701         81 AERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD---IRATAGDWLERVEIDAARIDDLPTTFSGGMQ  157 (258)
T ss_pred             HHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHH---HHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence            00    1123344444421 1 1  12222222111  01011111   223445566666665 477899999999654

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.39  E-value=2.9e-13  Score=122.28  Aligned_cols=119  Identities=13%  Similarity=0.146  Sum_probs=73.6

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS  251 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~  251 (320)
                      .++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.++..     ..+++++
T Consensus         4 ~l~~~~l~~~~----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~-Gl~~p~~G~i~~~~~-----~~i~~v~   73 (251)
T PRK09544          4 LVSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-GLVAPDEGVIKRNGK-----LRIGYVP   73 (251)
T ss_pred             EEEEeceEEEE----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCc-----cCEEEec
Confidence            45555554443    334466666665   9999999999999999999999 999999999987631     1244444


Q ss_pred             eeeccccCCc-cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        252 SVGNDILGFD-SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       252 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      |.+.....+. +..+++..  .....       .+++.++++.+|+.+..++++..|||++.
T Consensus        74 q~~~~~~~l~~~~~~~~~~--~~~~~-------~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  126 (251)
T PRK09544         74 QKLYLDTTLPLTVNRFLRL--RPGTK-------KEDILPALKRVQAGHLIDAPMQKLSGGET  126 (251)
T ss_pred             cccccccccChhHHHHHhc--ccccc-------HHHHHHHHHHcCChHHHhCChhhCCHHHH
Confidence            4432111110 11111111  01111       12344556667778888899999999653

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=1.3e-13  Score=127.12  Aligned_cols=133  Identities=14%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--------h
Q psy15138        176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--------H  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--------~  243 (320)
                      ++++++++.|..... ...++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..        .
T Consensus         7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~   85 (289)
T PRK13645          7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTN-GLIISETGQTIVGDYAIPANLKKIKEV   85 (289)
T ss_pred             EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEccccccccccH
Confidence            455655544422100 12366777665   9999999999999999999999 999999999988754311        1


Q ss_pred             hhhcCcceeeecccc--CC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCCC
Q psy15138        244 EMESGRTSSVGNDIL--GF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~--~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~~  312 (320)
                      ......++.++|...  .+ .+..+++..... ........   ..++.++++.+++ .++.++.+..|||++.
T Consensus        86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~---~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~  156 (289)
T PRK13645         86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEA---YKKVPELLKLVQLPEDYVKRSPFELSGGQK  156 (289)
T ss_pred             HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCChhHhcCChhhCCHHHH
Confidence            111233455555431  11 244444433211 11122222   2233445556666 3578899999999654

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.39  E-value=3.5e-13  Score=129.91  Aligned_cols=88  Identities=27%  Similarity=0.318  Sum_probs=74.1

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC--hhHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP--PNVLQD   86 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~~~le~   86 (320)
                      .+..+.|+|+|||++|+  |+.|...+|.+++  ||+|++|+++||++|+.+++.+++| +++++||+|+.+  .+++++
T Consensus        78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~all--VVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        78 DKRKFIVADTPGHEQYTRNMATGASTADLAVL--LVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHH
Confidence            45578999999999998  9999999999999  9999999999999999999999995 677999999964  556666


Q ss_pred             HHHHHHHhhcCCCcc
Q psy15138         87 TLKLLVRILKSPGCR  101 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~  101 (320)
                      ..+++..++...++.
T Consensus       156 i~~~~~~~~~~~~~~  170 (406)
T TIGR02034       156 IKKDYLAFAEQLGFR  170 (406)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            777776665443343

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.39  E-value=2.1e-13  Score=121.97  Aligned_cols=114  Identities=17%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cccccee
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVV  267 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v  267 (320)
                      .++++++.   |++++|+||||||||||+++|+ |+++|++|++.+++.+... ......++.++|+...|  .+..+++
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~-G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l   92 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIA-GFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI   92 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence            46666665   9999999999999999999999 9999999999987643211 11122344445443322  2333333


Q ss_pred             ecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        268 NKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       268 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..... .......   ..+++.++++.+|+.+..++.+..|||++
T Consensus        93 ~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  134 (235)
T cd03299          93 AYGLKKRKVDKKE---IERKVLEIAEMLGIDHLLNRKPETLSGGE  134 (235)
T ss_pred             HHHHHHcCCCHHH---HHHHHHHHHHHcCChhHHhcCcccCCHHH
Confidence            32211 1111111   22344456666777888899999999854

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.39  E-value=1.1e-13  Score=122.79  Aligned_cols=118  Identities=20%  Similarity=0.075  Sum_probs=76.3

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcce-eeeccccCCcc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTS-SVGNDILGFDS  262 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~-~~~~~~~~~~~  262 (320)
                      ..++.+++|.   |++++++|||||||||+||+|+ |++.|++|.+++++...-.     ...++++. |..|..|.++.
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLT-Gll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT-GLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHh-CccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence            3466777775   9999999999999999999999 9999999999998654211     22334433 33333343332


Q ss_pred             ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       263 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      ..........-.++.....++...+.++++   ++.+++.+.+.||-++..
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLd---l~~~lk~~vr~LSlGqRm  163 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERLDFLTEILD---LEGFLKWPVRKLSLGQRM  163 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHHhc---chhhhhhhhhhccchHHH
Confidence            111111111123344555555555555555   488899999999987653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.39  E-value=7.4e-13  Score=119.64  Aligned_cols=132  Identities=18%  Similarity=0.081  Sum_probs=78.3

Q ss_pred             eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch--
Q psy15138        173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK--  242 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~--  242 (320)
                      ++.++++++++.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++     |++|+|.+++.+..  
T Consensus         4 ~~~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~   78 (253)
T PRK14242          4 PPKMEARGLSFFYG----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLN-RMNDLIPGARVEGEILLDGENIYDP   78 (253)
T ss_pred             CcEEEEeeeEEEEC----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHH-hhcccCCCCCCceEEEECCEEcccc
Confidence            45677777665542    24567777775   9999999999999999999999 9864     58999998764321  


Q ss_pred             ---hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138        243 ---HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ---~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~  312 (320)
                         .......++.++|+...| .++.+++..... ... ......+   ++.++++.+|+    .+..++.+..|||++.
T Consensus        79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  155 (253)
T PRK14242         79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE---RVERSLRHAALWDEVKDRLHESALGLSGGQQ  155 (253)
T ss_pred             ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence               111122344445543222 244444433211 111 1112222   33344444454    2356788999999653

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.39  E-value=2.8e-13  Score=122.41  Aligned_cols=133  Identities=17%  Similarity=0.030  Sum_probs=76.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~----  242 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|+     +|+|.+++.+..    
T Consensus         4 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (253)
T PRK14267          4 AIETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNEEARVEGEVRLFGRNIYSPDV   78 (253)
T ss_pred             eEEEEeEEEEe----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCcccCCCCceEEEECCEEcccccc
Confidence            35566555444    334567777775   9999999999999999999999 999874     999998754321    


Q ss_pred             -hhhhcCcceeeeccccCC--ccccceeecCCC-CCC--CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF--DSVGNVVNKPEH-GSL--DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~--~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...+  .++.+++..... ...  ......+...++++.+++. .+.+..++.+..|||++.
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  155 (253)
T PRK14267         79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQR  155 (253)
T ss_pred             ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence             111122344445543322  234444433211 111  1122222333444433331 113457888999999653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.38  E-value=3.5e-13  Score=119.50  Aligned_cols=116  Identities=17%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc----cc----hh---hhhcCcceeeecccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF----RH----KH---EMESGRTSSVGNDIL  258 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~----~~----~~---~~~~g~v~~~~~~~~  258 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.++..    +.    ..   +.....++.++|+..
T Consensus        22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~  100 (224)
T TIGR02324        22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLY-ANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR  100 (224)
T ss_pred             EEEecceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence            466777665   9999999999999999999999 999999999998631    11    00   011122344444432


Q ss_pred             CC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138        259 GF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP  312 (320)
Q Consensus       259 ~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~  312 (320)
                      .+  .++.+++..... ........   .+++.++++.+|+.+ ..++++.+|||++.
T Consensus       101 ~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  155 (224)
T TIGR02324       101 VIPRVSALEVVAEPLLERGVPREAA---RARARELLARLNIPERLWHLPPATFSGGEQ  155 (224)
T ss_pred             cCCCccHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCchhhhhCCcccCCHHHH
Confidence            22  233333332111 11111122   233445556666665 35778999999653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.38  E-value=2.7e-13  Score=120.43  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++...|.... ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++....   ......
T Consensus        11 ~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~   88 (226)
T cd03248          11 IVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQPQGGQVLLDGKPISQYEHKYLHS   88 (226)
T ss_pred             eEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCcEEEECCCchHHcCHHHHHh
Confidence            455666555443210 12366666665   9999999999999999999999 999999999998754311   111122


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~  311 (320)
                      .++.++|....| .++.+++...... .......+.  ...+.++++.+  |+....++.+.+|||++
T Consensus        89 ~i~~~~q~~~l~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~  155 (226)
T cd03248          89 KVSLVGQEPVLFARSLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ  155 (226)
T ss_pred             hEEEEecccHHHhhhHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence            334444443222 2444444432221 111111111  11123444444  67777888999999954

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.38  E-value=4.1e-13  Score=132.58  Aligned_cols=130  Identities=15%  Similarity=0.067  Sum_probs=76.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--h
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--M  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~  245 (320)
                      .++++++++.|    +...+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+.+.+..    ..  .
T Consensus         3 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-G~~~p~~G~i~~~~~~~~~~~~~~~~~   77 (490)
T PRK10938          3 SLQISQGTFRL----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALA-GELPLLSGERQSQFSHITRLSFEQLQK   77 (490)
T ss_pred             eEEEEeEEEEc----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCceEEECCcccccCCHHHHHH
Confidence            35566555444    334577887775   9999999999999999999999 999999999987643211    11  1


Q ss_pred             hcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..++++|.+...+ +....+.............  .+..+++.++++.+|+.++.++++++|||++.
T Consensus        78 ~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  141 (490)
T PRK10938         78 LVSDEWQRNNTDM-LSPGEDDTGRTTAEIIQDE--VKDPARCEQLAQQFGITALLDRRFKYLSTGET  141 (490)
T ss_pred             HhceeccCcchhh-cccchhhccccHHHhcccc--hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHH
Confidence            2344443321101 1110000000000000000  01123344566667778888999999999753

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.38  E-value=3.2e-13  Score=122.14  Aligned_cols=133  Identities=17%  Similarity=0.052  Sum_probs=78.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----  242 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|     ++|+|.+++.+..    
T Consensus         7 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (254)
T PRK14273          7 IIETENLNLFY----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN-RMNDLVEGIKIEGNVIYEGKNIYSNNF   81 (254)
T ss_pred             eEEEeeeEEEe----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHh-ccccCCcCCCCceEEEECCEecccccc
Confidence            56666665544    234567777775   9999999999999999999999 99987     4899998754311    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...+ .++.+++..... .. .......+...++++.+++. .+.+..++.+..|||++.
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~  156 (254)
T PRK14273         82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ  156 (254)
T ss_pred             cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHH
Confidence             111123344445543222 344454443221 11 11112222333333333331 124567888999999653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.38  E-value=4.2e-13  Score=120.82  Aligned_cols=122  Identities=17%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeeccccch---hhhhcCcceeeeccccC
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFRHK---HEMESGRTSSVGNDILG  259 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~  259 (320)
                      |+....++++++.   |++++|+||||||||||+++|+ |+++   |.+|+|.+++.+..   .......++.++|+...
T Consensus        12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l   90 (246)
T PRK14269         12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-RMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNV   90 (246)
T ss_pred             ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcc
Confidence            3334567777775   9999999999999999999999 9974   68999998764321   11112233444444322


Q ss_pred             C-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        260 F-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       260 ~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                      | .+..+++..... ..... .......++.++++.+++.    +..++.+..|||++.
T Consensus        91 ~~~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  148 (246)
T PRK14269         91 FVKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQ  148 (246)
T ss_pred             ccccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHH
Confidence            2 244444433211 11100 0011122333445555553    456788899999643

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.38  E-value=5.8e-13  Score=128.78  Aligned_cols=130  Identities=18%  Similarity=0.145  Sum_probs=89.3

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----chhhhh
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----HKHEME  246 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----~~~~~~  246 (320)
                      .++++++    .++.|+..++|++++|.   ||++||+|.||||||||+|+|+ |.++|++|+|.+++..    ...+..
T Consensus         7 ~ll~~~~----i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs-Gv~~p~~G~I~~~G~~~~~~sp~~A~   81 (500)
T COG1129           7 PLLELRG----ISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS-GVYPPDSGEILIDGKPVAFSSPRDAL   81 (500)
T ss_pred             ceeeeec----ceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHh-CcccCCCceEEECCEEccCCCHHHHH
Confidence            3555554    45667778899999887   9999999999999999999999 9999999999998654    222333


Q ss_pred             cCcceeeeccccCC--ccccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        247 SGRTSSVGNDILGF--DSVGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..-+..++|+...+  .++.+|++.+...     .+.+....+++.+++..++.   ....++.+..||..+
T Consensus        82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~---~~~~~~~v~~Lsiaq  150 (500)
T COG1129          82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGL---DIDPDTLVGDLSIAQ  150 (500)
T ss_pred             hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCC---CCChhhhhhhCCHHH
Confidence            34456666665443  3555666554331     23445555555555554443   223788888888754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.38  E-value=3.4e-13  Score=122.93  Aligned_cols=131  Identities=20%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---  242 (320)
                      ..++++++++.|.    ...+++++++.   |++++|+||||||||||+++|+ |+++|     .+|+|.+++.+..   
T Consensus        18 ~~l~~~nl~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~I~~~g~~i~~~~   92 (267)
T PRK14235         18 IKMRARDVSVFYG----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDGEDIYDPR   92 (267)
T ss_pred             ceEEEEeEEEEEC----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcccccCCCCceEEEECCEECcccc
Confidence            4677777765553    34466666665   9999999999999999999999 99975     8999998764321   


Q ss_pred             --hhhhcCcceeeeccccCC-ccccceeecCCC-CCC--CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL--DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~--~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                        .......++.++|....+ .++.+++..... ...  ......   .++.++++.+|+.    +..++.+..|||++.
T Consensus        93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  169 (267)
T PRK14235         93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELD---EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ  169 (267)
T ss_pred             cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHH---HHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence              111123344555543322 244444433211 111  111222   2334445555553    356788999999653

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.38  E-value=3e-13  Score=116.10  Aligned_cols=50  Identities=30%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      |+...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.
T Consensus         9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~-G~~~~~~G~v~~~g~   61 (180)
T cd03214           9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GLLKPSSGEILLDGK   61 (180)
T ss_pred             ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCE
Confidence            3334466666665   9999999999999999999999 999999999998743

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.38  E-value=4.9e-13  Score=130.00  Aligned_cols=85  Identities=27%  Similarity=0.281  Sum_probs=71.1

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChh-HHHH
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPN-VLQD   86 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~-~le~   86 (320)
                      |++..+.|+|+|||++|+  |+.|+..+|.+++  ||++++|+++||++|+.+++.+++| .++++||+|+.+.+ .++.
T Consensus       121 ~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~all--VVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~  198 (447)
T PLN03127        121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGIL--VVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLEL  198 (447)
T ss_pred             CCCeEEEEEECCCccchHHHHHHHHhhCCEEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHH
Confidence            344568999999999999  9999999999999  9999999999999999999999998 56889999998543 4444


Q ss_pred             HHHHHHHhhcC
Q psy15138         87 TLKLLVRILKS   97 (320)
Q Consensus        87 ~l~~~~~~l~~   97 (320)
                      +.+++.+.+..
T Consensus       199 i~~~i~~~l~~  209 (447)
T PLN03127        199 VEMELRELLSF  209 (447)
T ss_pred             HHHHHHHHHHH
Confidence            44566666543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.38  E-value=3.9e-13  Score=133.95  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=78.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----  242 (320)
                      +++++++++.|........++++++|.   |++++|+||||||||||+++|+ |+++|     ++|+|.+++.+..    
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL-RLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCcCCccceEEEECCEecccCCH
Confidence            456665555442110124577777776   9999999999999999999999 99986     7999998754311    


Q ss_pred             h---hhhcCcceeeecccc----CCccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCcc---ccccccccccCC
Q psy15138        243 H---EMESGRTSSVGNDIL----GFDSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHER---YLKTTVFGMTGH  310 (320)
Q Consensus       243 ~---~~~~g~v~~~~~~~~----~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~---~~~~~~~~LSG~  310 (320)
                      .   ..+...++.++|+..    ...+..+++....  ..........++   +.++++.+|+.+   ..++++.+|||+
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~gl~~~~~~~~~~~~~LSgG  160 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGE---ILNCLDRVGIRQAAKRLTDYPHQLSGG  160 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHCCCCChHHHHhhCCcccCHH
Confidence            1   011123444555421    1123333332211  111222222233   344455555544   568899999996


Q ss_pred             CC
Q psy15138        311 VP  312 (320)
Q Consensus       311 ~~  312 (320)
                      +.
T Consensus       161 e~  162 (529)
T PRK15134        161 ER  162 (529)
T ss_pred             HH
Confidence            54

>KOG0058|consensus

Probab=99.38  E-value=8.7e-13  Score=130.73  Aligned_cols=134  Identities=17%  Similarity=0.133  Sum_probs=89.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g  248 (320)
                      .++|++++|.|..+. ...++++.+|.   |+.+|+|||||+||||+.++|. .+++|++|+|.+++.+   ..|.-.+.
T Consensus       465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~PtsG~IllDG~~i~~~~~~~lr~  542 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPTSGRILLDGVPISDINHKYLRR  542 (716)
T ss_pred             eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCCeEEECCeehhhcCHHHHHH
Confidence            578899998886543 35566777665   9999999999999999999999 9999999999998654   22333335


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~  311 (320)
                      .++.+.|++..| .+..+|+.++.. ....+++...+  ..+.+++...  |..-.....-.+|||++
T Consensus       543 ~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ  609 (716)
T KOG0058|consen  543 KIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ  609 (716)
T ss_pred             HeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence            556666666665 567888888776 33444433221  2222333221  22223344456899975

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.37  E-value=8.1e-13  Score=126.98  Aligned_cols=87  Identities=23%  Similarity=0.236  Sum_probs=72.6

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcE-EEEeCCCCCCh-hHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVF-VVVTKIDMCPP-NVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~-v~lnk~Dl~~~-~~le~~   87 (320)
                      ....+.|+|+|||++|+  |+.+++++|.+++  |+++++|+.++|++|+.++..+++|.+ +++||+|+.+. +..+..
T Consensus        73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~il--Vvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~  150 (394)
T TIGR00485        73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELV  150 (394)
T ss_pred             CCEEEEEEECCchHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHH
Confidence            34568999999999999  9999999999999  999999999999999999999999865 68999999864 345545


Q ss_pred             HHHHHHhhcCCCc
Q psy15138         88 LKLLVRILKSPGC  100 (320)
Q Consensus        88 l~~~~~~l~~~~~  100 (320)
                      .+++...+....+
T Consensus       151 ~~~i~~~l~~~~~  163 (394)
T TIGR00485       151 EMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhcCC
Confidence            5677776665443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.37  E-value=5.5e-13  Score=117.49  Aligned_cols=104  Identities=19%  Similarity=0.092  Sum_probs=66.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhhhcCcceeeeccccCC--ccccceeecCCCC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEMESGRTSSVGNDILGF--DSVGNVVNKPEHG  273 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~  273 (320)
                      ++++|+||||||||||+++|+ |+++|++|++.+++.+..       .......++.++|+...+  .+..+++......
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~  102 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIA-GLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKR  102 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhh
Confidence            889999999999999999999 999999999988754311       001122344445543322  2334443322111


Q ss_pred             CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        274 SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       274 ~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                       ....   ....++.++++.+|+.+..++.+..|||++
T Consensus       103 -~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  136 (214)
T cd03297         103 -KRNR---EDRISVDELLDLLGLDHLLNRYPAQLSGGE  136 (214)
T ss_pred             -CCHH---HHHHHHHHHHHHcCCHhHhhcCcccCCHHH
Confidence             1111   122344556666777878899999999964

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.37  E-value=5.8e-13  Score=119.47  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=70.9

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeeccccch---h-hhhcCcceeeecccc
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFRHK---H-EMESGRTSSVGNDIL  258 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~~~---~-~~~~g~v~~~~~~~~  258 (320)
                      .|+...+++++++.   |++++|+||||||||||+++|+ |++  +|++|+|.+++.+..   . ......++.++|+..
T Consensus         9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~   87 (243)
T TIGR01978         9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIA-GHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE   87 (243)
T ss_pred             EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccc
Confidence            33344567777775   9999999999999999999999 995  799999998764311   1 111112334444432


Q ss_pred             CCc--cccceeecCCC--CCC---CHHhHHHHHHHHHHHhcccCCc-cccccccc-cccCCCC
Q psy15138        259 GFD--SVGNVVNKPEH--GSL---DWVKICERSAKVITFIDLAGHE-RYLKTTVF-GMTGHVP  312 (320)
Q Consensus       259 ~~~--~~~~~v~~~~~--~~~---~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~-~LSG~~~  312 (320)
                      .+.  +..+++.....  ...   ......+..+++.++++.+|+. +..++.+. .|||++.
T Consensus        88 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~  150 (243)
T TIGR01978        88 EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK  150 (243)
T ss_pred             ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence            221  22333222110  000   0001111223445566666775 45677776 5999653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.37  E-value=7.9e-13  Score=109.87  Aligned_cols=134  Identities=18%  Similarity=0.122  Sum_probs=89.8

Q ss_pred             eeeeeecCCCeeeeec---ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc--------
Q psy15138        175 LLRQRKLDNGLTGQYL---LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR--------  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~--------  240 (320)
                      .+.++++++.++....   ..+++.+++|.   ||++++=||||||||||||+|. +.+.|++|.|.+....        
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LY-aNY~~d~G~I~v~H~g~~vdl~~a   82 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLY-ANYLPDEGQILVRHEGEWVDLVTA   82 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHH-hccCCCCceEEEEeCcchhhhhcc
Confidence            3556666666654331   35678888886   9999999999999999999999 9999999999886221        


Q ss_pred             c------hhhhhcCcceeeeccccCCccccceeecC-CCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        241 H------KHEMESGRTSSVGNDILGFDSVGNVVNKP-EHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       241 ~------~~~~~~g~v~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .      .+...+||++|..+-...... .+++..+ ............++..++..+++.  ++...-.|...||+..
T Consensus        83 ~pr~vl~vRr~TiGyVSQFLRviPRV~a-LdVvaePll~~gv~~~~a~~~a~~Ll~rLnlp--erLW~LaPaTFSGGEq  158 (235)
T COG4778          83 EPREVLEVRRTTIGYVSQFLRVIPRVSA-LDVVAEPLLARGVPREVARAKAADLLTRLNLP--ERLWSLAPATFSGGEQ  158 (235)
T ss_pred             ChHHHHHHHHhhhHHHHHHHHhccCcch-HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC--HHHhcCCCcccCCchh
Confidence            1      122346888887665544322 2333333 234555555556666666666653  3455667899999654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.37  E-value=3.5e-13  Score=121.77  Aligned_cols=59  Identities=31%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      ++++++++.|    +...+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.
T Consensus         4 l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~   65 (253)
T TIGR02323         4 LQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLA-GRLAPDHGTATYIMR   65 (253)
T ss_pred             EEEeeeEEEe----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEEecc
Confidence            4555554443    333456777765   9999999999999999999999 999999999998753

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.36  E-value=6.2e-13  Score=118.94  Aligned_cols=118  Identities=16%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC-ccccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF-DSVGN  265 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~-~~~~~  265 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+..   .......++.++|+...+ .++.+
T Consensus        16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~   94 (237)
T cd03252          16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQ-RFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD   94 (237)
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence            356666665   9999999999999999999999 999999999998764321   111122344444443222 24444


Q ss_pred             eeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCCC
Q psy15138        266 VVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ++..... ........+..  ..+.++++..  ++....+..+..|||++.
T Consensus        95 nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~  144 (237)
T cd03252          95 NIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQR  144 (237)
T ss_pred             HhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHH
Confidence            4443221 11111111111  1112233332  445566788999999653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.36  E-value=5.6e-13  Score=118.93  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=69.3

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC-ccccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF-DSVGN  265 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~-~~~~~  265 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++....   .......++..+|+...+ .++.+
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e   94 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE   94 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence            456666665   9999999999999999999999 999999999998754311   111122334444443222 24444


Q ss_pred             eeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCCC
Q psy15138        266 VVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ++...... .......+.  ...+.++++..  ++....++.+..|||++.
T Consensus        95 nl~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~  144 (234)
T cd03251          95 NIAYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQR  144 (234)
T ss_pred             HhhccCCC-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHH
Confidence            44332221 111111111  11122333333  556667788999999653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.36  E-value=5.8e-13  Score=120.22  Aligned_cols=133  Identities=16%  Similarity=0.065  Sum_probs=76.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccchh---
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHKH---  243 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~~---  243 (320)
                      .+++++++..|.    ...+++++++.   |++++|+||||||||||+++|+ |+++|     .+|+|.+++.+...   
T Consensus         4 ~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (251)
T PRK14270          4 KMESKNLNLWYG----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLN-RMNDLISNVKIEGEVLLDGKNIYDKDV   78 (251)
T ss_pred             EEEEEEeEEEEC----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHH-hccCcccCCCCccEEEECCEecccccc
Confidence            455666554442    34466776665   9999999999999999999999 99875     78999987543210   


Q ss_pred             --hhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        244 --EMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 --~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                        ......++.++|+...+ .+..+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  153 (251)
T PRK14270         79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ  153 (251)
T ss_pred             cHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence              11122344444443222 233444432211 111 1112222333444444432 224567888999999653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.36  E-value=3.5e-13  Score=117.11  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=63.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCCccccceeecCCCCCCCHH
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWV  278 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~  278 (320)
                      .|++++|+||||||||||+++|+ |+++|++|++.+++.+...  ....+++++.+.. +...++.+++....... .  
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~-~~~~tv~~~l~~~~~~~-~--   99 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIA-GIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGL-KLEMTVFENLKFWSEIY-N--   99 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCcccChhhhhhEEeccCCcCC-CccCCHHHHHHHHHHhc-c--
Confidence            39999999999999999999999 9999999999987643211  1113333332211 11123333332211000 0  


Q ss_pred             hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                          ..+++.++++.+++.+..++.+..|||++.
T Consensus       100 ----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  129 (195)
T PRK13541        100 ----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQ  129 (195)
T ss_pred             ----cHHHHHHHHHHcCCHhhhccChhhCCHHHH
Confidence                112333455556667778889999999653

>PRK13409 putative ATPase RIL; Provisional

Probab=99.36  E-value=3.3e-12  Score=128.37  Aligned_cols=118  Identities=18%  Similarity=0.168  Sum_probs=74.1

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT  250 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v  250 (320)
                      .+++++++++.|.    .. .++.+++   .|++++|+||||||||||+++|+ |+++|++|+|.++       ..++++
T Consensus       339 ~~l~~~~ls~~~~----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~-Gl~~p~~G~I~~~-------~~i~y~  405 (590)
T PRK13409        339 TLVEYPDLTKKLG----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLA-GVLKPDEGEVDPE-------LKISYK  405 (590)
T ss_pred             eEEEEcceEEEEC----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEe-------eeEEEe
Confidence            3566766655442    11 2444444   39999999999999999999999 9999999999874       124555


Q ss_pred             eeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +|....... .++.+++..... ...   ..   ..+.++++.+++.+..++++..|||++.
T Consensus       406 ~Q~~~~~~~-~tv~e~l~~~~~-~~~---~~---~~~~~~L~~l~l~~~~~~~~~~LSGGe~  459 (590)
T PRK13409        406 PQYIKPDYD-GTVEDLLRSITD-DLG---SS---YYKSEIIKPLQLERLLDKNVKDLSGGEL  459 (590)
T ss_pred             cccccCCCC-CcHHHHHHHHhh-hcC---hH---HHHHHHHHHCCCHHHHhCCcccCCHHHH
Confidence            554322111 233333332211 111   01   1233455666777888999999999753

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.36  E-value=5.4e-13  Score=120.97  Aligned_cols=133  Identities=14%  Similarity=0.034  Sum_probs=77.1

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---  242 (320)
                      ..++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|     ++|+|.+++....   
T Consensus        11 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~~~g~~i~~~~   85 (258)
T PRK14268         11 PQIKVENLNLWY----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRIEGKVSIEGEDIYEPD   85 (258)
T ss_pred             eeEEEeeeEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCcccCCCcceEEEECCEEccccc
Confidence            356666665544    334567777765   9999999999999999999999 99975     7999998754311   


Q ss_pred             --hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccC-CccccccccccccCCC
Q psy15138        243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHV  311 (320)
Q Consensus       243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~  311 (320)
                        .......++.++|....+ .+..+++..... .........+...++++.+++.+ +.+..++.+..|||++
T Consensus        86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~  159 (258)
T PRK14268         86 VDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ  159 (258)
T ss_pred             chHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence              111122344445543222 244444433211 11122222222333444433321 1355788899999964

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=7.1e-13  Score=121.98  Aligned_cols=129  Identities=17%  Similarity=0.095  Sum_probs=77.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|    ....++++++|.   |++++|+||||||||||+++|+ |+++     |++|+|.+++.+..    
T Consensus        39 ~l~i~~l~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~~~~p~~G~I~i~G~~i~~~~~  113 (285)
T PRK14254         39 VIEARDLNVFY----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN-RMNDLIDAARVEGELTFRGKNVYDADV  113 (285)
T ss_pred             eEEEEEEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCcccCCCCceEEEECCEEcccccc
Confidence            46666665444    334567777765   9999999999999999999999 9987     68999998754321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...| .++.+++..... ..... ...   .++.++++.+|+    .+..++.+..|||++.
T Consensus       114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-~~~---~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~  186 (285)
T PRK14254        114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG-DID---ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ  186 (285)
T ss_pred             chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcH-HHH---HHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence             111123445555553322 233444332211 11111 122   233444445554    3467889999999653

>KOG0057|consensus

Probab=99.35  E-value=6e-13  Score=127.95  Aligned_cols=93  Identities=22%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++.+.|..   .+++++.++|+   |+++||+|+|||||||++|+|. ++++ .+|+|.+++.+.   ..+..++
T Consensus       351 ~I~F~dV~f~y~~---k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Ll-rF~d-~sG~I~IdG~dik~~~~~SlR~  425 (591)
T KOG0057|consen  351 SIEFDDVHFSYGP---KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLL-RFFD-YSGSILIDGQDIKEVSLESLRQ  425 (591)
T ss_pred             cEEEEeeEEEeCC---CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHH-HHhc-cCCcEEECCeeHhhhChHHhhh
Confidence            4677777766643   34577777775   9999999999999999999999 9999 999999997662   2334456


Q ss_pred             cceeeeccccCC-ccccceeecCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEH  272 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~  272 (320)
                      .++.+||+-..| ++...++.++..
T Consensus       426 ~Ig~VPQd~~LFndTIl~NI~YGn~  450 (591)
T KOG0057|consen  426 SIGVVPQDSVLFNDTILYNIKYGNP  450 (591)
T ss_pred             heeEeCCcccccchhHHHHhhcCCC
Confidence            667777776665 567777777654

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.35  E-value=1.5e-12  Score=106.15  Aligned_cols=110  Identities=20%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             CccCcEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccccc-hhhhhcCcceeeeccccCCc--cccceeecCCC
Q psy15138        199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRH-KHEMESGRTSSVGNDILGFD--SVGNVVNKPEH  272 (320)
Q Consensus       199 ~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~-~~~~~~g~v~~~~~~~~~~~--~~~~~v~~~~~  272 (320)
                      .-+||++.|+||||||||||+..+. |.+.+.   +|++.++..+. ........+...||+.+.|+  +++.++.+...
T Consensus        25 ia~GeivtlMGPSGcGKSTLls~~~-G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp  103 (213)
T COG4136          25 IAKGEIVTLMGPSGCGKSTLLSWMI-GALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP  103 (213)
T ss_pred             ecCCcEEEEECCCCccHHHHHHHHH-hhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecC
Confidence            3349999999999999999999999 999875   69988875541 11112334455566655553  45666666555


Q ss_pred             CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        273 GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+....   +...+...++..|+.....+.|.+|||++.
T Consensus       104 ~~~KG~a---Rr~~a~aAL~~~gL~g~f~~dP~tlSGGQr  140 (213)
T COG4136         104 ATLKGNA---RRNAANAALERSGLDGAFHQDPATLSGGQR  140 (213)
T ss_pred             cccccHH---HHhhHHHHHHHhccchhhhcChhhcCcchH
Confidence            4443332   223334456667778888899999999764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.35  E-value=5.6e-13  Score=118.39  Aligned_cols=114  Identities=17%  Similarity=0.135  Sum_probs=70.4

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCcccc
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVG  264 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~  264 (320)
                      .|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++..... ...+      ..+....++.
T Consensus        31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~-~~~~------~~~~~~~tv~  102 (224)
T cd03220          31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLA-GIYPPDSGTVTVRGRVSSL-LGLG------GGFNPELTGR  102 (224)
T ss_pred             hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEchh-hccc------ccCCCCCcHH
Confidence            34445677777765   9999999999999999999999 9999999999987542110 0000      0001112333


Q ss_pred             ceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        265 NVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       265 ~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +++..... ........   ..++.++++.+++.+..++.+.+|||++.
T Consensus       103 enl~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  148 (224)
T cd03220         103 ENIYLNGRLLGLSRKEI---DEKIDEIIEFSELGDFIDLPVKTYSSGMK  148 (224)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            33322111 11111221   22344555666778888999999999653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.35  E-value=5.9e-13  Score=132.39  Aligned_cols=50  Identities=22%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             eeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeec
Q psy15138        187 GQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQK  237 (320)
Q Consensus       187 ~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~  237 (320)
                      ..|+.+.++++++|.   |++++|+||||||||||+++|+ |++  +|++|+|.+.
T Consensus         8 ~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~~~p~~G~i~~~   62 (520)
T TIGR03269         8 KKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLR-GMDQYEPTSGRIIYH   62 (520)
T ss_pred             EEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-hcccCCCCceEEEEe
Confidence            334445677887776   9999999999999999999999 997  6999999875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.34  E-value=6.3e-13  Score=121.23  Aligned_cols=134  Identities=19%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             eeeeeecCCCeeee-----ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQ-----YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----  242 (320)
                      +++++++++.|...     .....++++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++....    
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLV-GLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEeccccCh
Confidence            35566665554310     0023467777765   9999999999999999999999 999999999998764311    


Q ss_pred             h--hhhcCcceeeecccc-CC---ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138        243 H--EMESGRTSSVGNDIL-GF---DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~--~~~~g~v~~~~~~~~-~~---~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~  312 (320)
                      .  ......++.++|+.. .|   .+..+++.....  ......   +...++.++++..|+. ...++.+..|||++.
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~  157 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA---ERLARASEMLRAVDLDDSVLDKRPPQLSGGQL  157 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence            0  111234455555431 11   222333221110  111111   1222344555566775 567889999999653

>PRK12735 elongation factor Tu; Reviewed

Probab=99.34  E-value=1.7e-12  Score=124.71  Aligned_cols=85  Identities=25%  Similarity=0.250  Sum_probs=71.2

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcE-EEEeCCCCCCh-hHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVF-VVVTKIDMCPP-NVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~-v~lnk~Dl~~~-~~le~~   87 (320)
                      ++..+.|+|+|||++|+  |+.++..+|.+++  |+++++|++++|++|+.++..+++|.+ +++||+|+.+. +.++..
T Consensus        73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~ll--Vvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~  150 (396)
T PRK12735         73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELV  150 (396)
T ss_pred             CCcEEEEEECCCHHHHHHHHHhhhccCCEEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHH
Confidence            44568999999999999  9999999999999  999999999999999999999999866 57999999843 445555


Q ss_pred             HHHHHHhhcCC
Q psy15138         88 LKLLVRILKSP   98 (320)
Q Consensus        88 l~~~~~~l~~~   98 (320)
                      .+++...+...
T Consensus       151 ~~ei~~~l~~~  161 (396)
T PRK12735        151 EMEVRELLSKY  161 (396)
T ss_pred             HHHHHHHHHHc
Confidence            55676666543

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.34  E-value=7.5e-13  Score=135.83  Aligned_cols=93  Identities=16%  Similarity=0.039  Sum_probs=67.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|...  ...++++++++   |+++||+||||||||||+|+|+ |+++|++|+|.+++.+.   .....+.
T Consensus       451 ~I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~-gl~~p~~G~I~idg~~i~~~~~~~lr~  527 (686)
T TIGR03797       451 AIEVDRVTFRYRPD--GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL-GFETPESGSVFYDGQDLAGLDVQAVRR  527 (686)
T ss_pred             eEEEEEEEEEcCCC--CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence            35666666666421  23467777775   9999999999999999999999 99999999999986542   2223345


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .+..+++..+
T Consensus       528 ~i~~v~Q~~~lf~gTI~eNi~~~  550 (686)
T TIGR03797       528 QLGVVLQNGRLMSGSIFENIAGG  550 (686)
T ss_pred             ccEEEccCCccCcccHHHHHhcC
Confidence            667777776665 4566666654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.34  E-value=4.2e-13  Score=121.42  Aligned_cols=127  Identities=16%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC----CCceeeeccccchh-hhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN----GRGHARQKLFRHKH-EME  246 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~----~~G~i~~~~~~~~~-~~~  246 (320)
                      .++++++++.|     ...+++++++.   |++++|+||||||||||+++|+ |+++|    ++|+|.+++.+... ...
T Consensus         4 ~l~~~~l~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~~~G~i~~~g~~i~~~~~~   77 (254)
T PRK10418          4 QIELRNIALQA-----AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAAL-GILPAGVRQTAGRVLLDGKPVAPCALR   77 (254)
T ss_pred             EEEEeCeEEEe-----ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCCcCCEEEECCeeccccccc
Confidence            45666665544     23456666665   9999999999999999999999 99999    99999987543211 111


Q ss_pred             cCcceeeecccc-CCc---cccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCcc---ccccccccccCCCC
Q psy15138        247 SGRTSSVGNDIL-GFD---SVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHER---YLKTTVFGMTGHVP  312 (320)
Q Consensus       247 ~g~v~~~~~~~~-~~~---~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~---~~~~~~~~LSG~~~  312 (320)
                      ...++.++|+.. .|.   +..+++.... ......  .   .+++.+.++.+++.+   ..++.+.+|||++.
T Consensus        78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~  146 (254)
T PRK10418         78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--D---DATLTAALEAVGLENAARVLKLYPFEMSGGML  146 (254)
T ss_pred             cceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--H---HHHHHHHHHHcCCCChhhhhhcCCcccCHHHH
Confidence            123445555432 121   1111111100 011111  1   133444555556554   57889999999653

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.34  E-value=7e-13  Score=117.68  Aligned_cols=111  Identities=19%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC-ccccceeecCCCCCCCH-
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF-DSVGNVVNKPEHGSLDW-  277 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~-  277 (320)
                      .|++++|+||||||||||+++|+ |+++|++|+|.+++.+... ...+++++|.+.....+ .+..+++.......... 
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~   83 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAIL-GLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL   83 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence            38999999999999999999999 9999999999998653211 11234444432211111 22333333221100000 


Q ss_pred             -HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        278 -VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       278 -~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                       ........++.++++.+++.++.++.+.+|||++.
T Consensus        84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  119 (223)
T TIGR03771        84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQR  119 (223)
T ss_pred             cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHH
Confidence             00011223455566677778888999999999653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.34  E-value=4.8e-13  Score=119.21  Aligned_cols=107  Identities=17%  Similarity=0.128  Sum_probs=64.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCC----CCceeeeccccchh-hhhcCcceeeecccc-CC---ccccceeecCCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDN----GRGHARQKLFRHKH-EMESGRTSSVGNDIL-GF---DSVGNVVNKPEH  272 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~----~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~-~~---~~~~~~v~~~~~  272 (320)
                      |++++|+||||||||||+++|+ |+++|    ++|+|.+++.+... ......++.++|+.. .|   .+..+++.....
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~   90 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAIL-GLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR   90 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-cCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence            9999999999999999999999 99999    89999987654211 111123444454431 11   122222221110


Q ss_pred             -CCCCHHhHHHHHHHHHHHhcccCCc---cccccccccccCCCC
Q psy15138        273 -GSLDWVKICERSAKVITFIDLAGHE---RYLKTTVFGMTGHVP  312 (320)
Q Consensus       273 -~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG~~~  312 (320)
                       ......   ....++.++++.+++.   +..++.+..|||++.
T Consensus        91 ~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~  131 (230)
T TIGR02770        91 SLGKLSK---QARALILEALEAVGLPDPEEVLKKYPFQLSGGML  131 (230)
T ss_pred             HcCccHH---HHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHH
Confidence             111111   1223445556666665   567889999999654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.34  E-value=9.1e-13  Score=130.44  Aligned_cols=120  Identities=16%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeeccccch----hhhhcCcceeeeccccC
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKLFRHK----HEMESGRTSSVGNDILG  259 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~  259 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|  ++|+|.+++....    .......++.++|+...
T Consensus        11 ~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~-G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~   89 (500)
T TIGR02633        11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILS-GVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL   89 (500)
T ss_pred             eCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecccc
Confidence            3334577777776   9999999999999999999999 99987  7999998754311    11111223444443322


Q ss_pred             C--ccccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCcccc-ccccccccCCCC
Q psy15138        260 F--DSVGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYL-KTTVFGMTGHVP  312 (320)
Q Consensus       260 ~--~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~-~~~~~~LSG~~~  312 (320)
                      +  .++.+++..+...     .......   ..++.++++.+|+.+.. ++++..|||++.
T Consensus        90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  147 (500)
T TIGR02633        90 VPELSVAENIFLGNEITLPGGRMAYNAM---YLRAKNLLRELQLDADNVTRPVGDYGGGQQ  147 (500)
T ss_pred             CCCCcHHHHHHhhccccccccccCHHHH---HHHHHHHHHHcCCCCCcccCchhhCCHHHH
Confidence            2  2344444332211     0112222   23444556666666554 577999999653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>CHL00071 tufA elongation factor Tu

Probab=99.34  E-value=1.3e-12  Score=126.09  Aligned_cols=87  Identities=23%  Similarity=0.205  Sum_probs=73.9

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhH-HHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNV-LQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~-le~~   87 (320)
                      +...+.|+|+|||++|+  |+.+...+|.+++  ||+|++|+++||++|+.++..+++| .++++||+|+++.+. ++..
T Consensus        73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~il--Vvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~  150 (409)
T CHL00071         73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELV  150 (409)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHHhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHH
Confidence            34568999999999999  9999999999999  9999999999999999999999998 668899999986444 4555


Q ss_pred             HHHHHHhhcCCCc
Q psy15138         88 LKLLVRILKSPGC  100 (320)
Q Consensus        88 l~~~~~~l~~~~~  100 (320)
                      .+++...|....+
T Consensus       151 ~~~l~~~l~~~~~  163 (409)
T CHL00071        151 ELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHHhCC
Confidence            5677777765444

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1e-12  Score=118.63  Aligned_cols=133  Identities=19%  Similarity=0.099  Sum_probs=76.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~----  242 (320)
                      +++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|.     +|+|.+++.+..    
T Consensus         4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~~~~~~~   78 (252)
T PRK14272          4 LLSAQDVNIYY----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIYGPRV   78 (252)
T ss_pred             EEEEeeeEEEE----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCcCCCCceeEEECCEEcccCcc
Confidence            34555555444    334567777775   9999999999999999999999 999874     799998754321    


Q ss_pred             -hhhhcCcceeeeccccCC--ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF--DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...+  .+..+++..... ... ......+...+.++.+++. ++.+..++.+..|||++.
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  154 (252)
T PRK14272         79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ  154 (252)
T ss_pred             CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence             111122344445443322  233444432211 111 1122222333333333332 223456788999999654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.34  E-value=8e-13  Score=119.32  Aligned_cols=120  Identities=18%  Similarity=0.128  Sum_probs=71.0

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccchh-----hhhcCcceeeec
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHKH-----EMESGRTSSVGN  255 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~~-----~~~~g~v~~~~~  255 (320)
                      |+....+++++|.   |++++|+||||||||||+++|+ |+.+     |.+|+|.+++.....     ......++.++|
T Consensus        15 ~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q   93 (251)
T PRK14244         15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFN-RMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ   93 (251)
T ss_pred             ECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEec
Confidence            3334567777765   9999999999999999999999 9986     469999987543110     011233455555


Q ss_pred             cccCCc-cccceeecCC-CCCC--CHHhHHHHHHHHHHHhcccCCcc----ccccccccccCCCC
Q psy15138        256 DILGFD-SVGNVVNKPE-HGSL--DWVKICERSAKVITFIDLAGHER----YLKTTVFGMTGHVP  312 (320)
Q Consensus       256 ~~~~~~-~~~~~v~~~~-~~~~--~~~~~~~~~~~~l~~l~l~gl~~----~~~~~~~~LSG~~~  312 (320)
                      +...|. ++.+++.... ....  .....   ..++.++++.+|+.+    ..++.+..|||++.
T Consensus        94 ~~~~~~~tv~~ni~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  155 (251)
T PRK14244         94 KPNPFPKSIYDNVAYGPKLHGLAKNKKKL---DEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ  155 (251)
T ss_pred             CcccccCCHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence            533222 3444443321 1111  11111   223344555555543    46778899999653

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.34  E-value=1e-12  Score=114.89  Aligned_cols=45  Identities=33%  Similarity=0.401  Sum_probs=40.3

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~-G~~~~~~G~i~~~g   66 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALL-GELEKLSGSVSVPG   66 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-CcCCCCCCeEEEcC
Confidence            466666665   9999999999999999999999 99999999999864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.33  E-value=1e-12  Score=135.22  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|... +...+++++++.   |++++|+||||||||||+++|. |+++|++|+|.+++.+.   .+.....
T Consensus       478 ~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~-gl~~p~~G~I~idg~~i~~~~~~~lr~  555 (711)
T TIGR00958       478 LIEFQDVSFSYPNR-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ-NLYQPTGGQVLLDGVPLVQYDHHYLHR  555 (711)
T ss_pred             eEEEEEEEEECCCC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCEEEECCEEHHhcCHHHHHh
Confidence            36677777666421 123567777775   9999999999999999999999 99999999999986542   2222344


Q ss_pred             cceeeeccccCC-ccccceeecCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      .++.++|+...| .+..+|+..+.
T Consensus       556 ~i~~v~Q~~~lF~gTIreNI~~g~  579 (711)
T TIGR00958       556 QVALVGQEPVLFSGSVRENIAYGL  579 (711)
T ss_pred             hceEEecCccccccCHHHHHhcCC
Confidence            566667776655 46677776653

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.6e-12  Score=118.54  Aligned_cols=131  Identities=18%  Similarity=0.099  Sum_probs=78.1

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch---
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---  242 (320)
                      ..++++++.+.|    +.+.+++++++.   |++++|+||||||||||+++|+ |+++     |++|+|.+++.+..   
T Consensus        19 ~~l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~~~~~~   93 (267)
T PRK14237         19 IALSTKDLHVYY----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLN-RMNDTIDIARVTGQILYRGIDINRKE   93 (267)
T ss_pred             eEEEEeeEEEEE----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hccCccCCCCcceEEEECCEEccccc
Confidence            356666665544    335567777775   9999999999999999999999 9986     57999988754321   


Q ss_pred             --hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138        243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~  312 (320)
                        .......++.++|....| .++.+++..+.. .. .......+.   +.++++..++    .+..++.+..|||++.
T Consensus        94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~  169 (267)
T PRK14237         94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI---VETSLKQAALWDQVKDDLHKSALTLSGGQQ  169 (267)
T ss_pred             CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHH---HHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence              111122344445543222 244454443211 11 111122222   3334444444    3467888999999653

>KOG0459|consensus

Probab=99.33  E-value=1.8e-12  Score=120.28  Aligned_cols=89  Identities=25%  Similarity=0.300  Sum_probs=76.1

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCC-CcEEEEeCCCC--
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSV-PVFVVVTKIDM--   78 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i-~~~v~lnk~Dl--   78 (320)
                      |+..+++++|+|||.-|+  |+.|++++|.++|  |++|..|-.       +|||||..||+++++ ..++++||||-  
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vL--visar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt  231 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVL--VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT  231 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhh--hhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence            567789999999999999  9999999999999  999975543       599999999999999 68899999995  


Q ss_pred             --CChhHHHHHHHHHHHhhcCCCcc
Q psy15138         79 --CPPNVLQDTLKLLVRILKSPGCR  101 (320)
Q Consensus        79 --~~~~~le~~l~~~~~~l~~~~~~  101 (320)
                        .+.+|+++....+..+|...+++
T Consensus       232 vnWs~eRy~E~~~k~~~fLr~~g~n  256 (501)
T KOG0459|consen  232 VNWSNERYEECKEKLQPFLRKLGFN  256 (501)
T ss_pred             cCcchhhHHHHHHHHHHHHHHhccc
Confidence              46778888888888777744444

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.33  E-value=3.6e-12  Score=111.50  Aligned_cols=112  Identities=20%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-CchhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-IVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTL   88 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l   88 (320)
                      +..+.|+|+|||++|.  ++.++.++|.+++  |++++++ ..+++++++..+...++ |+++++||+|+.....++..+
T Consensus        82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ll--Vvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~  159 (203)
T cd01888          82 VRHVSFVDCPGHEILMATMLSGAAVMDGALL--LIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENY  159 (203)
T ss_pred             ccEEEEEECCChHHHHHHHHHhhhcCCEEEE--EEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHH
Confidence            3679999999999999  8999999999999  9999984 67899999999998998 578899999998877777777


Q ss_pred             HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      +++...+........+. +..+..+.+..+++.+.+..+
T Consensus       160 ~~i~~~~~~~~~~~~~i-~~vSA~~g~gi~~L~~~l~~~  197 (203)
T cd01888         160 EQIKKFVKGTIAENAPI-IPISAQLKYNIDVLLEYIVKK  197 (203)
T ss_pred             HHHHHHHhccccCCCcE-EEEeCCCCCCHHHHHHHHHHh
Confidence            77776654321111111 123345666677777776554

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.5e-12  Score=117.54  Aligned_cols=129  Identities=17%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK-----  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~-----  242 (320)
                      ++++++++.|    +...+++++++.   |++++|+||||||||||+++|+ |+++  |   ++|+|.+++....     
T Consensus         5 l~~~nl~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~i~~~~~~   79 (252)
T PRK14256          5 VKLEQLNVHF----GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSIN-RMHDLVPSARVTGKILLDDTDIYDRGVD   79 (252)
T ss_pred             EEEEEEEEEe----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHH-hcccCCCCCCCceEEEECCEEcccccCC
Confidence            4555555444    234567777665   9999999999999999999999 9986  4   5899998764321     


Q ss_pred             hhhhcCcceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        243 HEMESGRTSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                      .......++.++|+...+  .+..+++.....  .........+   ++.++++.+++.    +..++.+..|||++.
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  154 (252)
T PRK14256         80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE---IVESSLKRVALWDEVKDRLKSNAMELSGGQQ  154 (252)
T ss_pred             hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHH---HHHHHHHHcCCchhhhHHhhCCcCcCCHHHH
Confidence            111123345555553333  234444432211  1111222222   233444444443    456778999999653

>PRK12288 GTPase RsgA; Reviewed

Probab=99.33  E-value=8.5e-12  Score=117.44  Aligned_cols=152  Identities=18%  Similarity=0.215  Sum_probs=90.4

Q ss_pred             CCccchhhhccceecCCCCch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccc-c
Q psy15138         33 ASPADHSMLQSKVGANAGIVG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCL-I  110 (320)
Q Consensus        33 ~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~-~  110 (320)
                      ++|+|++++  |.+.+..... ...+.+.++...++|+++|+||+|+.+....+. ..++...+...++     .+.. +
T Consensus       118 aANvD~vlI--V~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g~-----~v~~vS  189 (347)
T PRK12288        118 AANIDQIVI--VSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIGY-----RVLMVS  189 (347)
T ss_pred             EEEccEEEE--EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCCC-----eEEEEe
Confidence            689999888  7776644432 445678889999999999999999986543221 2222222211111     1111 2


Q ss_pred             CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138        111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL  190 (320)
Q Consensus       111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      ..+.+.++++...+.                                                                 
T Consensus       190 A~tg~GideL~~~L~-----------------------------------------------------------------  204 (347)
T PRK12288        190 SHTGEGLEELEAALT-----------------------------------------------------------------  204 (347)
T ss_pred             CCCCcCHHHHHHHHh-----------------------------------------------------------------
Confidence            223333333332211                                                                 


Q ss_pred             ceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecC
Q psy15138        191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKP  270 (320)
Q Consensus       191 ~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~  270 (320)
                                 +..++|+|+||+|||||+|.|. |......|.+.....       .|+.......++.++..+.++..+
T Consensus       205 -----------~ki~~~vG~sgVGKSTLiN~Ll-~~~~~~t~~is~~~~-------rGrHTT~~~~l~~l~~~~~liDTP  265 (347)
T PRK12288        205 -----------GRISIFVGQSGVGKSSLINALL-PEAEILVGDVSDNSG-------LGQHTTTAARLYHFPHGGDLIDSP  265 (347)
T ss_pred             -----------hCCEEEECCCCCCHHHHHHHhc-cccceeeccccCcCC-------CCcCceeeEEEEEecCCCEEEECC
Confidence                       1126899999999999999999 888777787764322       344444444444444445567776


Q ss_pred             CCCCCC
Q psy15138        271 EHGSLD  276 (320)
Q Consensus       271 ~~~~~~  276 (320)
                      ....++
T Consensus       266 Gir~~~  271 (347)
T PRK12288        266 GVREFG  271 (347)
T ss_pred             CCCccc
Confidence            654433

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.9e-12  Score=118.40  Aligned_cols=137  Identities=13%  Similarity=0.017  Sum_probs=79.1

Q ss_pred             cCCceeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeecccc
Q psy15138        169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFR  240 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~  240 (320)
                      +++....++++++.+.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|     .+|+|.+++.+
T Consensus        14 ~~~~~~~l~~~nl~~~~~----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~   88 (274)
T PRK14265         14 INPDHSVFEVEGVKVFYG----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFN-RMNDLIPGAKVEGRLLYRDRN   88 (274)
T ss_pred             cCCCCceEEEeeEEEEeC----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh-cccccccCCCcCceEEECCEe
Confidence            445556778877766553    23466666665   9999999999999999999999 99863     58999987543


Q ss_pred             ch-----hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCC
Q psy15138        241 HK-----HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       241 ~~-----~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~  311 (320)
                      ..     .......++.++|+...+ .++.+++..... .... ....+...+.++.+++. ++.+..++++..|||++
T Consensus        89 l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq  166 (274)
T PRK14265         89 IYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ  166 (274)
T ss_pred             cccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHH
Confidence            21     111123445555543322 233343332211 1111 11112223333333321 12356788899999964

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.33  E-value=2.2e-12  Score=124.46  Aligned_cols=110  Identities=21%  Similarity=0.235  Sum_probs=83.6

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ..+.++|+|||++|.  |+.+++.+|.+++  ||++++|+ +++|++|+.++..+++ |+++++||+|+.+.++.++..+
T Consensus        80 ~~i~liDtPGh~~f~~~~~~g~~~aD~aIl--VVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~  157 (406)
T TIGR03680        80 RRVSFVDAPGHETLMATMLSGAALMDGALL--VIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYE  157 (406)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHHHCCEEEE--EEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHH
Confidence            468999999999999  9999999999999  99999998 8999999999999999 5788899999998877766666


Q ss_pred             HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138         90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS  126 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~  126 (320)
                      ++...+........+. +-.+.-+.+..+++.+.+..
T Consensus       158 ~i~~~l~~~~~~~~~i-i~vSA~~g~gi~~L~e~L~~  193 (406)
T TIGR03680       158 EIKEFVKGTVAENAPI-IPVSALHNANIDALLEAIEK  193 (406)
T ss_pred             HHHhhhhhcccCCCeE-EEEECCCCCChHHHHHHHHH
Confidence            7766554321112211 11233455566666666554

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=2.3e-12  Score=117.53  Aligned_cols=138  Identities=17%  Similarity=0.098  Sum_probs=79.0

Q ss_pred             CCceeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccc
Q psy15138        170 EADCVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRH  241 (320)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~  241 (320)
                      ++....++++++++.|.    ...+++++++.   |++++|+||||||||||+++|+ |+++     |++|+|.+++.+.
T Consensus        16 ~~~~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i   90 (268)
T PRK14248         16 EAKEHILEVKDLSIYYG----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSIN-RMNDLIPSARSEGEILYEGLNI   90 (268)
T ss_pred             CCCCceEEEEEEEEEeC----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHH-hcccccCCCCCceEEEECCEEc
Confidence            34445677777765543    34567777765   9999999999999999999999 9864     6899999875432


Q ss_pred             h-----hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        242 K-----HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       242 ~-----~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                      .     .......++.++|+...| .+..+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus        91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  170 (268)
T PRK14248         91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ  170 (268)
T ss_pred             ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence            1     111122345555543333 233444432211 111 1111122233333333321 113457888999999653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.33  E-value=7.1e-13  Score=117.88  Aligned_cols=47  Identities=28%  Similarity=0.352  Sum_probs=41.5

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      ..+++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+
T Consensus        17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~   66 (229)
T cd03254          17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQKGQILIDGID   66 (229)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCEe
Confidence            467777765   9999999999999999999999 9999999999987543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=8.8e-13  Score=126.68  Aligned_cols=126  Identities=20%  Similarity=0.275  Sum_probs=79.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--h-hhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--E-MESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~-~~~g  248 (320)
                      .++++++++.|...  ..+++++.++.   ||++||+|+||||||||+.+|. |.++|++|+|+.++.+..+  + ....
T Consensus       336 ~l~~~~vsF~y~~~--~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~-~~~~~~~G~i~~~g~~~~~l~~~~~~e  412 (573)
T COG4987         336 ALELRNVSFTYPGQ--QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA-GAWDPQQGSITLNGVEIASLDEQALRE  412 (573)
T ss_pred             eeeeccceeecCCC--ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH-hccCCCCCeeeECCcChhhCChhhHHH
Confidence            34556555555432  23578888776   9999999999999999999999 9999999999998644211  1 1122


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccc-----------ccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTV-----------FGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~-----------~~LSG~~  311 (320)
                      .++...|....| .+..+|+....... +       .+++.+.++.+|++++....|           ..|||++
T Consensus       413 ~i~vl~Qr~hlF~~Tlr~NL~lA~~~A-s-------DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE  479 (573)
T COG4987         413 TISVLTQRVHLFSGTLRDNLRLANPDA-S-------DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE  479 (573)
T ss_pred             HHhhhccchHHHHHHHHHHHhhcCCCC-C-------HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence            334444444444 45666666544332 1       123334444555555544443           6677765

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1e-12  Score=118.52  Aligned_cols=132  Identities=20%  Similarity=0.085  Sum_probs=75.3

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK-----  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~-----  242 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|     ++|+|.+++.+..     
T Consensus         4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14240          4 ISVKDLDLFY----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLN-RMNDLIPSVKIEGEVLLDGQDIYKSDID   78 (250)
T ss_pred             EEEEEEEEEE----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEEccccccc
Confidence            4555554444    234567777765   9999999999999999999999 98763     6899998754321     


Q ss_pred             hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                      .......++.++|+...+ .+..+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus        79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  152 (250)
T PRK14240         79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ  152 (250)
T ss_pred             hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence            111123344555543322 233444433211 111 1112223333444443331 123466788999999653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.33  E-value=1.4e-12  Score=130.94  Aligned_cols=132  Identities=19%  Similarity=0.180  Sum_probs=84.8

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~  249 (320)
                      ++++++++.|..   ..+++++++|.   |+++||+||||||||||+++|. |+++|.+|+|.+++.+   ......+..
T Consensus       329 I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~-r~~~~~~G~I~idg~dI~~i~~~~lr~~  404 (567)
T COG1132         329 IEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPTSGEILIDGIDIRDISLDSLRKR  404 (567)
T ss_pred             EEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence            667777766653   34567777764   9999999999999999999999 9999999999996543   222333455


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHH--HHHHhccc--CCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAK--VITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~--~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...| .+..+|+.++... ...+++.+..+.  +.+++...  |+.......-..|||++.
T Consensus       405 I~~V~Qd~~LF~~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr  471 (567)
T COG1132         405 IGIVSQDPLLFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR  471 (567)
T ss_pred             ccEEcccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence            66667776665 5677887776543 222333222111  22222222  344444444457888654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.6e-12  Score=117.84  Aligned_cols=130  Identities=13%  Similarity=0.029  Sum_probs=76.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++  |   ++|+|.+++.+..    
T Consensus        12 ~l~i~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~p~~~~~G~i~~~g~~~~~~~~   86 (259)
T PRK14274         12 VYQINGMNLWYG----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLN-LMIQMVPNVKLTGEMNYNGSNILKGKV   86 (259)
T ss_pred             eEEEeeEEEEEC----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhccCCCCCCCceEEEECCEEcccccc
Confidence            567777665543    23466666665   9999999999999999999999 9987  3   5899998754321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                       .......+++++|+...+ .++.+++..... .. .......+...   ++++.+++.    +..++.+.+|||++.
T Consensus        87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~l~~~~~~LS~Gq~  161 (259)
T PRK14274         87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVE---KSLKDVALWDEVKDRLHTQALSLSGGQQ  161 (259)
T ss_pred             CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHH---HHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence             111123344555543322 244444432211 11 11122222233   344444442    456888999999654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.2e-12  Score=118.65  Aligned_cols=129  Identities=15%  Similarity=0.048  Sum_probs=74.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc------ccc---h
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL------FRH---K  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~------~~~---~  242 (320)
                      .+.++++.+.|    +....+++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+.+      .+.   .
T Consensus        10 ~i~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia-G~~~~~~G~v~~~G~~~~~g~~~~~~~   84 (257)
T PRK14246         10 VFNISRLYLYI----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN-RLIEIYDSKIKVDGKVLYFGKDIFQID   84 (257)
T ss_pred             heeeeeEEEec----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCcCceeEcCEEEECCcccccCC
Confidence            45555554433    344567777765   9999999999999999999999 99999998776543      111   1


Q ss_pred             hhhhcCcceeeeccccCC--ccccceeecCCCC-C-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCC
Q psy15138        243 HEMESGRTSSVGNDILGF--DSVGNVVNKPEHG-S-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHV  311 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~-~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~  311 (320)
                      .......++..+|+...+  .++.+++...... . ....+..   .++.++++.+++.    +..++.+..|||++
T Consensus        85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~  158 (257)
T PRK14246         85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK---KIVEECLRKVGLWKEVYDRLNSPASQLSGGQ  158 (257)
T ss_pred             HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence            101122334444443222  2444444432211 1 1122222   2334444555553    45678899999854

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.6e-12  Score=118.29  Aligned_cols=132  Identities=17%  Similarity=0.058  Sum_probs=75.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|    +...+++++++.   |++++|+||||||||||+++|+ |+++     |++|+|.+++.+..    
T Consensus        10 ~l~i~~v~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~~~   84 (264)
T PRK14243         10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFN-RLNDLIPGFRVEGKVTFHGKNLYAPDV   84 (264)
T ss_pred             EEEEeeeEEEE----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHH-hhhcccCCCCCceEEEECCEEcccccc
Confidence            56677665544    234567777765   9999999999999999999999 9976     37899998754321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...+ .+..+++..... .... ....+...++++.+++. .+.+..++.+..|||++.
T Consensus        85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~  157 (264)
T PRK14243         85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ  157 (264)
T ss_pred             ChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHH
Confidence             111122344555543322 244444433221 1111 11122233333333331 113456788999999653

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.32  E-value=8.6e-13  Score=115.35  Aligned_cols=65  Identities=18%  Similarity=0.089  Sum_probs=51.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~  240 (320)
                      .+.++++.+.|........++++++|.   |++++|+||||||||||+++|+ |+++   |++|++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~~~~G~i~i~g~~   73 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALA-NRTEGNVSVEGDIHYNGIP   73 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhc-ccCCCCCCcceEEEECCEE
Confidence            456677777665543345567777765   9999999999999999999999 9999   899999987543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.4e-12  Score=116.20  Aligned_cols=132  Identities=17%  Similarity=0.050  Sum_probs=75.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK-----  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~-----  242 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|.     +|+|.+++.+..     
T Consensus         5 l~~~~l~~~~----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~~~~~~~~   79 (251)
T PRK14249          5 IKIRGVNFFY----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN-RMNDIVSGARLEGAVLLDNENIYSPNLD   79 (251)
T ss_pred             EEEEEEEEEE----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCccccCCcccEEEECCEEccccccC
Confidence            4455554443    334467777765   9999999999999999999999 999987     699988754321     


Q ss_pred             hhhhcCcceeeeccccCC-ccccceeecCCC-CCCC-HHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                      .......++.++|+...+ .+..+++..... .... .....+...++++.+++. .+.+..++.+..|||++.
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~  153 (251)
T PRK14249         80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQ  153 (251)
T ss_pred             hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHH
Confidence            011123345555554332 244444433221 1111 111122233333333321 123567889999999653

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.32  E-value=1.3e-12  Score=115.46  Aligned_cols=47  Identities=28%  Similarity=0.376  Sum_probs=41.5

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      ..+++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++..
T Consensus        18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~   67 (220)
T cd03245          18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA-GLYKPTSGSVLLDGTD   67 (220)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCeEEECCEE
Confidence            467777765   9999999999999999999999 9999999999987543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.31  E-value=2.1e-12  Score=116.51  Aligned_cols=113  Identities=16%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccC--Cccccc
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILG--FDSVGN  265 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~--~~~~~~  265 (320)
                      .+++++|.   |++++|+||||||||||+++|+ |++++ +|+|.+++.+..   .......++.++|....  ..+..+
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~-Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMA-GLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence            45556554   9999999999999999999999 99865 899998764311   11111223344443211  123444


Q ss_pred             eeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        266 VVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       266 ~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ++.............   .+++.++++.+|+.+..++.+..|||++
T Consensus        89 nl~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~  131 (248)
T PRK03695         89 YLTLHQPDKTRTEAV---ASALNEVAEALGLDDKLGRSVNQLSGGE  131 (248)
T ss_pred             HHHhcCccCCCcHHH---HHHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence            443322111111111   2334455566677778889999999964

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.31  E-value=5.3e-13  Score=108.93  Aligned_cols=98  Identities=27%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCCc--cccceeecCCCCCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGFD--SVGNVVNKPEHGSL  275 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~~--~~~~~v~~~~~~~~  275 (320)
                      .|++++|+||||||||||+++|+ |..+|.+|.|.++..+..   .......++.++++...+.  ++.++         
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~-g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~---------   79 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALA-GLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN---------   79 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHT-TSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH---------
T ss_pred             CCCEEEEEccCCCccccceeeec-ccccccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            39999999999999999999999 999999999998754322   1223344455555422221  11111         


Q ss_pred             CHHhHHHHHHHHHHHhcccCC-ccccccccccccCCC
Q psy15138        276 DWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHV  311 (320)
Q Consensus       276 ~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~  311 (320)
                         ...+...++++.+++.+. ....++.+..|||++
T Consensus        80 ---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge  113 (137)
T PF00005_consen   80 ---ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGE  113 (137)
T ss_dssp             ---HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHH
T ss_pred             ---cccccccccccccccccccccccccccchhhHHH
Confidence               223345556666655442 334455559999854

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2e-12  Score=118.17  Aligned_cols=134  Identities=16%  Similarity=0.121  Sum_probs=77.7

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch---
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---  242 (320)
                      ..++++++.+.|.    ...+++++++.   |++++|+|+||||||||+++|+ |+++     |++|+|.+++.+..   
T Consensus        23 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~~~g~~~~~~~   97 (271)
T PRK14238         23 VVFDTQNLNLWYG----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLN-RMVELVPSVKTTGKILYRDQNIFDKS   97 (271)
T ss_pred             eEEEEeeeEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhccCCCCCCCceeEEECCEEccccc
Confidence            3567776655442    23456666665   9999999999999999999999 9987     69999998764321   


Q ss_pred             --hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                        .......++.++|+...| .++.+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus        98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~  173 (271)
T PRK14238         98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQ  173 (271)
T ss_pred             ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHH
Confidence              111123344455543322 244444433211 111 1111112223333333221 345567889999999653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.31  E-value=1.8e-12  Score=127.05  Aligned_cols=84  Identities=23%  Similarity=0.294  Sum_probs=72.2

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHHH
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVLQ   85 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~le   85 (320)
                      +.+..+.|+|+|||++|.  |..++..+|.+++  ||++++|+++||++|+.++..+++ |.++++||+|+.  +.+.++
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~all--VVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAIL--LIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHH
Confidence            345678999999999998  8999999999999  999999999999999999999999 567899999997  455677


Q ss_pred             HHHHHHHHhhc
Q psy15138         86 DTLKLLVRILK   96 (320)
Q Consensus        86 ~~l~~~~~~l~   96 (320)
                      +..+++...++
T Consensus       182 ~i~~~l~~~~~  192 (474)
T PRK05124        182 RIREDYLTFAE  192 (474)
T ss_pred             HHHHHHHHHHH
Confidence            77777766554

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.9e-12  Score=117.39  Aligned_cols=134  Identities=14%  Similarity=0.043  Sum_probs=77.9

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---  242 (320)
                      +++.++++++.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|     .+|+|.+++....   
T Consensus        20 ~~l~i~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~p~~~~~~~G~i~~~g~~i~~~~   94 (276)
T PRK14271         20 PAMAAVNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN-RMNDKVSGYRYSGDVLLGGRSIFNYR   94 (276)
T ss_pred             cEEEEeeEEEEEC----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-ccCCcCCCCCCceEEEECCEEccccc
Confidence            4667777666553    34567777765   9999999999999999999999 99986     6999998754311   


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~  312 (320)
                       .......+..++|+...| .++.+++.....  ......+..+...++++.+++.. +.+.+++.+..|||++.
T Consensus        95 ~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~  169 (276)
T PRK14271         95 DVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ  169 (276)
T ss_pred             hhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence             111122344444443222 244444433211  11122222222333334333321 11346788999999654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.3e-12  Score=118.66  Aligned_cols=133  Identities=15%  Similarity=0.067  Sum_probs=76.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+.+     |++|+|.+++....    
T Consensus        39 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~-Gl~~~~p~~~~~G~I~~~g~~i~~~~~  113 (286)
T PRK14275         39 HVVAKNFSIYY----GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN-RMNDLIPSCHTTGALMFDGEDIYGKFT  113 (286)
T ss_pred             EEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccccCCCCCCceEEEECCEEhhhccc
Confidence            45666655444    333466666665   9999999999999999999999 9864     48999998754311    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...+ .++.+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus       114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~  188 (286)
T PRK14275        114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ  188 (286)
T ss_pred             chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence             011122344445543222 244444443211 111 1111222333344433332 124567888999999654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.30  E-value=2.2e-12  Score=115.47  Aligned_cols=118  Identities=16%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC-ccccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF-DSVGN  265 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~-~~~~~  265 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+..   .......++..+|+...+ .++.+
T Consensus        17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e   95 (238)
T cd03249          17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE   95 (238)
T ss_pred             cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHh-ccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence            356666665   9999999999999999999999 999999999998764311   111112244444443222 24444


Q ss_pred             eeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCCC
Q psy15138        266 VVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       266 ~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ++....... ......+..  ..+.++++..  ++....+..+..|||++.
T Consensus        96 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~  145 (238)
T cd03249          96 NIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK  145 (238)
T ss_pred             HhhccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence            443322111 111111111  0122222222  445566778899999653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.3e-12  Score=115.39  Aligned_cols=132  Identities=15%  Similarity=0.028  Sum_probs=76.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----  242 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+++|+ |++++     ++|+|.+++.+..    
T Consensus         6 ~i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~~~~~~~   80 (253)
T PRK14261          6 ILSTKNLNLWY----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFN-RMNDLIPGCRITGDILYNGENIMDSGA   80 (253)
T ss_pred             eEEEeeeEEEE----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHh-ccccCCCCCCcceEEEECCEEcccccc
Confidence            45666665444    334567777765   9999999999999999999999 98763     4899998754321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhccc-CCccccccccccccCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~  311 (320)
                       .......++.++|+...| .++.+++..... .. .......+...++++.+++. ++.+..++.+..|||++
T Consensus        81 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~  154 (253)
T PRK14261         81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ  154 (253)
T ss_pred             chhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence             111123345555553322 244444433211 11 11112222333344444332 12345788899999964

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.1e-12  Score=115.33  Aligned_cols=132  Identities=20%  Similarity=0.071  Sum_probs=74.2

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----h
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----H  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----~  243 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++|     ++|++.+++.+..    .
T Consensus         4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~~~~~~~~   78 (249)
T PRK14253          4 FNIENLDLFY----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLN-RMNDLIEGVKITGKLTMDGEDIYGNIDV   78 (249)
T ss_pred             EEEeccEEEE----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHH-hhcccccCCCCceEEEECCEEcccccch
Confidence            4555554443    334567777775   9999999999999999999999 99986     5899998754321    1


Q ss_pred             hhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        244 EMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                      ......++.++|+...| .++.+++..... ... ......+...+.++.+++. .+.+..++.+.+|||++.
T Consensus        79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~  151 (249)
T PRK14253         79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ  151 (249)
T ss_pred             HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence            11122344444443322 233344432211 111 1111122233333333331 123466788999999653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.30  E-value=2.3e-12  Score=117.26  Aligned_cols=108  Identities=14%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeec
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNK  269 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~  269 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++.       .++..+... .....+..+++..
T Consensus        38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~-Gl~~p~~G~I~~~g~-------~~~~~~~~~-~~~~~tv~enl~~  108 (264)
T PRK13546         38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIG-GSLSPTVGKVDRNGE-------VSVIAISAG-LSGQLTGIENIEF  108 (264)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCE-------EeEEecccC-CCCCCcHHHHHHH
Confidence            456666664   9999999999999999999999 999999999987642       111111111 1111122333221


Q ss_pred             CC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        270 PE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       270 ~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .. .........   ...+.++++..++.+..++.+..|||++.
T Consensus       109 ~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~  149 (264)
T PRK13546        109 KMLCMGFKRKEI---KAMTPKIIEFSELGEFIYQPVKKYSSGMR  149 (264)
T ss_pred             HHHHcCCCHHHH---HHHHHHHHHHcCCchhhcCCcccCCHHHH
Confidence            11 111122222   22233445556667888899999999653

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.30  E-value=2.2e-12  Score=115.22  Aligned_cols=46  Identities=28%  Similarity=0.294  Sum_probs=40.4

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.
T Consensus        15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~v~~~g~   63 (236)
T cd03253          15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVSSGSILIDGQ   63 (236)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCEEEECCE
Confidence            356666654   9999999999999999999999 999999999998754

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=2.2e-12  Score=116.44  Aligned_cols=130  Identities=16%  Similarity=0.045  Sum_probs=75.2

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|    +...+++++++.   |++++|+||||||||||+++|+ |+++     |.+|+|.+++.+..    
T Consensus         4 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          4 IISAKDVHLSY----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             eEEEEeeEEEE----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-hccccccCCCcceEEEECCEEcccccc
Confidence            45666655544    234566666665   9999999999999999999999 9987     47999998764321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...| .++.+++..... ... ......+   ++.++++.+++.    +..++.+.+|||++.
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  153 (251)
T PRK14251         79 DLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ---RVEESLKQAAIWKETKDNLDRNAQAFSGGQQ  153 (251)
T ss_pred             hHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHcCCCcchHHHhccChhhCCHHHH
Confidence             011122344444443222 244444433211 111 1111122   233344444542    456788999999653

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=3.4e-12  Score=115.14  Aligned_cols=132  Identities=17%  Similarity=0.086  Sum_probs=73.5

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc---CCC--CCceeeeccccch-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE---LDN--GRGHARQKLFRHK-----  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~---l~~--~~G~i~~~~~~~~-----  242 (320)
                      ++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+   ++|  ++|+|.+++.+..     
T Consensus         4 l~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14245          4 IDARDVNFWY----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFN-RMNDLIPATRLEGEIRIDGRNIYDKGVQ   78 (250)
T ss_pred             EEEEEEEEEE----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHh-hhhcccCCCCCceEEEECCEeccccccc
Confidence            4555554433    334566777665   9999999999999999999999 97   454  5899998764321     


Q ss_pred             hhhhcCcceeeeccccCC-ccccceeecCCC-CCCC-HHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138        243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~  312 (320)
                      .......++.++|+...+ .+..+++..... .... .....+...++++.+++.. +.+..++.+..|||++.
T Consensus        79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  152 (250)
T PRK14245         79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQ  152 (250)
T ss_pred             HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHH
Confidence            111122344445543222 233344432211 1111 1112223333444333311 13457888999999653

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.6e-12  Score=124.87  Aligned_cols=78  Identities=24%  Similarity=0.236  Sum_probs=60.4

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCcceeeeccccCC-ccccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGRTSSVGNDILGF-DSVGN  265 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~v~~~~~~~~~~-~~~~~  265 (320)
                      +.+++.++.   |++++|+|+||||||||+++|+ |+++|++|+|++++.+   ...+..+..++.++|+.+.| .+..+
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~-G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTire  413 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL-GFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE  413 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHh-CcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHH
Confidence            667777665   9999999999999999999999 9999999999998544   23334456677777776665 46666


Q ss_pred             eeecCC
Q psy15138        266 VVNKPE  271 (320)
Q Consensus       266 ~v~~~~  271 (320)
                      |+....
T Consensus       414 Ni~l~~  419 (559)
T COG4988         414 NILLAR  419 (559)
T ss_pred             HhhccC
Confidence            665544

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=2e-12  Score=116.55  Aligned_cols=130  Identities=16%  Similarity=0.042  Sum_probs=74.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|     .+|++.+++.+..    
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~i~g~~~~~~~~   77 (250)
T PRK14262          3 IIEIENFSAYYG----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKGQDIYDPQL   77 (250)
T ss_pred             eEEEEeeEEEeC----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHh-ccccCCCCCCcceEEEECCEEcccchh
Confidence            355665554442    33466666665   9999999999999999999999 99874     8999998754321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...+ .++.+++..... .. .......+.   +.+.++.+|+.    +..++.+.+|||++.
T Consensus        78 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  152 (250)
T PRK14262         78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI---VEESLKKAALWDEVKSELNKPGTRLSGGQQ  152 (250)
T ss_pred             hHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH---HHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence             111123344455543222 233344432211 11 111112222   33344444442    357888999999653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=3.5e-12  Score=115.69  Aligned_cols=133  Identities=16%  Similarity=0.055  Sum_probs=76.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|    +...+++++++.   |++++|+|+||||||||+++|+ |+++|     ++|+|.+++.+..    
T Consensus         7 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (259)
T PRK14260          7 AIKVKDLSFYY----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQNIYDPRI   81 (259)
T ss_pred             eEEEEEEEEEE----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcCcccCCccceEEEECCEecccccc
Confidence            45666665444    234567777765   9999999999999999999999 99885     4899998754321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC--CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...| .++.+++.....  .........+...++++.+++. .+.+..++.+..|||++.
T Consensus        82 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  156 (259)
T PRK14260         82 NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQ  156 (259)
T ss_pred             chHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence             111122344555543322 244444432211  1112122222233333333331 123567888999999653

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.29  E-value=2.9e-12  Score=113.31  Aligned_cols=47  Identities=23%  Similarity=0.263  Sum_probs=41.7

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |.++|.+|+|.+++..
T Consensus        18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~   67 (221)
T cd03244          18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVD   67 (221)
T ss_pred             ccccceEEEECCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCCEEEECCEE
Confidence            467777775   9999999999999999999999 9999999999987543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=3.7e-12  Score=115.74  Aligned_cols=119  Identities=17%  Similarity=-0.026  Sum_probs=70.0

Q ss_pred             cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch-----hhhhcCcceeeecc
Q psy15138        190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK-----HEMESGRTSSVGND  256 (320)
Q Consensus       190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~-----~~~~~g~v~~~~~~  256 (320)
                      +...++++++|.   |++++|+||||||||||+++|+ |+++|     .+|+|.+++.+..     .......+..++|+
T Consensus        19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~   97 (261)
T PRK14263         19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLN-RMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ   97 (261)
T ss_pred             CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-cccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence            334567777765   9999999999999999999999 99986     7999998765321     11112234444554


Q ss_pred             ccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        257 ILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       257 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                      ...| .+..+++..............+   ++.++++..++.    +..++.+..|||++.
T Consensus        98 ~~~~~~tv~enl~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~  155 (261)
T PRK14263         98 PNPFSMSIFDNVAFGLRLNRYKGDLGD---RVKHALQGAALWDEVKDKLKVSGLSLSGGQQ  155 (261)
T ss_pred             CccccccHHHHHHHHHhhcCchHHHHH---HHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence            3322 2344444332211101111222   333444444443    345678889999653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.29  E-value=2.4e-12  Score=129.93  Aligned_cols=90  Identities=22%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~  249 (320)
                      ++++++++.+.   +...+++++++.   |+++||+||||||||||+++|+ |++ |.+|+|.+++.+   ...+..+..
T Consensus       350 i~~~~vsf~~~---~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~-g~~-p~~G~I~i~g~~i~~~~~~~lr~~  424 (588)
T PRK11174        350 IEAEDLEILSP---DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL-GFL-PYQGSLKINGIELRELDPESWRKH  424 (588)
T ss_pred             EEEEeeEEecc---CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCC-CCCcEEEECCEecccCCHHHHHhh
Confidence            45555543322   224567777775   9999999999999999999999 999 899999998644   222333456


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+.+.| .+..+|+..+
T Consensus       425 i~~v~Q~~~LF~~TI~eNI~~g  446 (588)
T PRK11174        425 LSWVGQNPQLPHGTLRDNVLLG  446 (588)
T ss_pred             eEEecCCCcCCCcCHHHHhhcC
Confidence            77777777666 5667777665

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.29  E-value=2.5e-12  Score=132.53  Aligned_cols=92  Identities=22%  Similarity=0.247  Sum_probs=66.2

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.   .....+..
T Consensus       478 I~~~~vsf~y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~-gl~~p~~G~I~idg~~i~~~~~~~lr~~  554 (710)
T TIGR03796       478 VELRNITFGYSPL--EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA-GLYQPWSGEILFDGIPREEIPREVLANS  554 (710)
T ss_pred             EEEEEEEEecCCC--CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence            5566666655421  23467777775   9999999999999999999999 99999999999986542   12223455


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++...
T Consensus       555 i~~v~Q~~~lf~gTi~eNi~l~  576 (710)
T TIGR03796       555 VAMVDQDIFLFEGTVRDNLTLW  576 (710)
T ss_pred             eeEEecCChhhhccHHHHhhCC
Confidence            66677776655 4566776553

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.29  E-value=2.9e-11  Score=112.76  Aligned_cols=120  Identities=19%  Similarity=0.180  Sum_probs=85.5

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccC-C-
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILG-F-  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~-~-  260 (320)
                      ..+++++++.   |+.++|||.||||||||-..|. +++++. |+|++.+.+.      .....+..+..+||++++ + 
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all-rL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs  377 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL-RLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS  377 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHH-hhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence            5678888886   9999999999999999999999 998876 9999986541      111234556677888776 3 


Q ss_pred             --ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCC
Q psy15138        261 --DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPD  313 (320)
Q Consensus       261 --~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~  313 (320)
                        .+++.++..+..-.-+.....++.+++.+.+..+|+. .-++++|++.||++..
T Consensus       378 PRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ  433 (534)
T COG4172         378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ  433 (534)
T ss_pred             cccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence              2345555555442222223345566677777778885 5689999999998753

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.28  E-value=2.9e-12  Score=129.08  Aligned_cols=93  Identities=20%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.   .......
T Consensus       341 ~i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~-gl~~p~~G~I~i~g~~i~~~~~~~~~~  417 (582)
T PRK11176        341 DIEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT-RFYDIDEGEILLDGHDLRDYTLASLRN  417 (582)
T ss_pred             eEEEEEEEEecCCC--CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHH-hccCCCCceEEECCEEhhhcCHHHHHh
Confidence            35666666555321  13467777775   9999999999999999999999 99999999999986542   1223345


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .+..+++..+
T Consensus       418 ~i~~v~Q~~~lf~~Ti~~Ni~~~  440 (582)
T PRK11176        418 QVALVSQNVHLFNDTIANNIAYA  440 (582)
T ss_pred             hceEEccCceeecchHHHHHhcC
Confidence            567777776655 4566776654

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.28  E-value=2.3e-12  Score=132.38  Aligned_cols=92  Identities=20%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...  ...++++++++   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.   .....+..
T Consensus       464 I~~~~vsf~Y~~~--~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~-gl~~p~~G~I~idg~~l~~~~~~~lr~~  540 (694)
T TIGR03375       464 IEFRNVSFAYPGQ--ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL-GLYQPTEGSVLLDGVDIRQIDPADLRRN  540 (694)
T ss_pred             EEEEEEEEEeCCC--CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence            5566666655321  23467777775   9999999999999999999999 99999999999986542   12223455


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       541 i~~v~Q~~~lf~~TI~eNi~~~  562 (694)
T TIGR03375       541 IGYVPQDPRLFYGTLRDNIALG  562 (694)
T ss_pred             cEEECCChhhhhhhHHHHHhCC
Confidence            66677776655 4566666654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.28  E-value=4.4e-12  Score=114.47  Aligned_cols=133  Identities=17%  Similarity=0.072  Sum_probs=75.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~----  242 (320)
                      +++++++.+.|.    ...++++++|.   |++++|+||||||||||+++|+ |+.+  |   ++|+|.+++.+..    
T Consensus         5 ~l~~~~l~~~~~----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~p~~~~~G~i~~~g~~~~~~~~   79 (252)
T PRK14239          5 ILQVSDLSVYYN----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN-RMNDLNPEVTITGSIVYNGHNIYSPRT   79 (252)
T ss_pred             eEEEEeeEEEEC----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-cccccCCCCCccceEEECCEECcCccc
Confidence            456666654442    34566777765   9999999999999999999999 9853  6   4899998754321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CCCC-HHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...| .++.+++..... .... .....+....+++.+++. ++.+..++.+..|||++.
T Consensus        80 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  154 (252)
T PRK14239         80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ  154 (252)
T ss_pred             chHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence             111122344445543322 244444433211 1111 111222233333333321 123456888999999653

>PRK00049 elongation factor Tu; Reviewed

Probab=99.28  E-value=7.1e-12  Score=120.46  Aligned_cols=87  Identities=23%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcE-EEEeCCCCCC-hhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVF-VVVTKIDMCP-PNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~-v~lnk~Dl~~-~~~le~~   87 (320)
                      ....+.|+|+|||++|+  |..++..+|.+++  ||++++|+.++|++|+.++..+++|.+ +++||+|+.+ .+.++..
T Consensus        73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~ll--VVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~  150 (396)
T PRK00049         73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELV  150 (396)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhccCCEEEE--EEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHH
Confidence            34568999999999999  8999999999999  999999999999999999999999976 6899999985 3445555


Q ss_pred             HHHHHHhhcCCCc
Q psy15138         88 LKLLVRILKSPGC  100 (320)
Q Consensus        88 l~~~~~~l~~~~~  100 (320)
                      .+++...+...++
T Consensus       151 ~~~i~~~l~~~~~  163 (396)
T PRK00049        151 EMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHHHHhcCC
Confidence            5677777765444

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1e-12  Score=110.81  Aligned_cols=50  Identities=26%  Similarity=0.242  Sum_probs=42.8

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .+.+..+.+.+|.   |+.+.|.||||||||||||+|+ |+++|.+|+|+++..
T Consensus        12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRila-GLl~p~~G~v~~~~~   64 (209)
T COG4133          12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILA-GLLRPDAGEVYWQGE   64 (209)
T ss_pred             cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHH-cccCCCCCeEEecCC
Confidence            3445566666665   9999999999999999999999 999999999999743

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.28  E-value=4.7e-12  Score=114.28  Aligned_cols=61  Identities=21%  Similarity=0.194  Sum_probs=47.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~  240 (320)
                      .++++++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+  ++|.+|++.+++.+
T Consensus         7 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~G~i~~~g~~   72 (252)
T CHL00131          7 ILEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA-GHPAYKILEGDILFKGES   72 (252)
T ss_pred             eEEEEeEEEEe----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHc-CCCcCcCCCceEEECCEE
Confidence            45666655444    234567777775   9999999999999999999999 98  57999999987543

>PLN03211 ABC transporter G-25; Provisional

Probab=99.28  E-value=2.5e-12  Score=130.85  Aligned_cols=121  Identities=21%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC--CceeeeccccchhhhhcCcceeeeccccCC--
Q psy15138        188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG--RGHARQKLFRHKHEMESGRTSSVGNDILGF--  260 (320)
Q Consensus       188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~--~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--  260 (320)
                      .++.+.+++++++.   |++++|+||||||||||+++|+ |.++|+  +|+|.+++.+..... ...++.++|+...+  
T Consensus        77 ~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa-G~~~~~~~sG~I~inG~~~~~~~-~~~i~yv~Q~~~l~~~  154 (659)
T PLN03211         77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA-GRIQGNNFTGTILANNRKPTKQI-LKRTGFVTQDDILYPH  154 (659)
T ss_pred             cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh-CCCCCCceeEEEEECCEECchhh-ccceEEECcccccCCc
Confidence            34456678888775   9999999999999999999999 999885  899999865422111 12244444443322  


Q ss_pred             ccccceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCcccc-----ccccccccCCCCC
Q psy15138        261 DSVGNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYL-----KTTVFGMTGHVPD  313 (320)
Q Consensus       261 ~~~~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~-----~~~~~~LSG~~~~  313 (320)
                      .++.+++......    .....+.   .+++.++++.+|+.+..     +..+.+|||++..
T Consensus       155 lTV~E~l~~~a~~~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerq  213 (659)
T PLN03211        155 LTVRETLVFCSLLRLPKSLTKQEK---ILVAESVISELGLTKCENTIIGNSFIRGISGGERK  213 (659)
T ss_pred             CCHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhh
Confidence            3555555432211    1122222   23344455555665544     3457889998754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.28  E-value=3.2e-11  Score=111.08  Aligned_cols=47  Identities=23%  Similarity=0.220  Sum_probs=38.9

Q ss_pred             CCccchhhhccceecCCCC-ch-hHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138         33 ASPADHSMLQSKVGANAGI-VG-MTKEHLGLALALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        33 ~~~~d~~~l~~vv~a~~g~-~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~   81 (320)
                      ++++|.+++  |++++++. .. ...+++..+...++|+++|+||+|+.+.
T Consensus        76 ~anvD~vll--V~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~  124 (287)
T cd01854          76 AANVDQLVI--VVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD  124 (287)
T ss_pred             EEeCCEEEE--EEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh
Confidence            788999999  99999876 32 3345788888889999999999999765

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.28  E-value=2.8e-12  Score=129.44  Aligned_cols=91  Identities=20%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|..   ...++++++++   |++++|+|+||||||||+++|+ |+++|.+|.|.+++.+.   ........
T Consensus       341 i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~-gl~~p~~G~I~idg~~i~~~~~~~l~~~  416 (592)
T PRK10790        341 IDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM-GYYPLTEGEIRLDGRPLSSLSHSVLRQG  416 (592)
T ss_pred             EEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCceEEECCEEhhhCCHHHHHhh
Confidence            566666665532   13467777775   9999999999999999999999 99999999999986542   12233456


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       417 i~~v~Q~~~lF~~Ti~~NI~~~  438 (592)
T PRK10790        417 VAMVQQDPVVLADTFLANVTLG  438 (592)
T ss_pred             eEEEccCCccccchHHHHHHhC
Confidence            66777776666 4566776664

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.28  E-value=3.5e-12  Score=128.33  Aligned_cols=92  Identities=20%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.   .....+..
T Consensus       339 i~~~~v~f~y~~~--~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~-g~~~p~~G~I~i~g~~i~~~~~~~~r~~  415 (574)
T PRK11160        339 LTLNNVSFTYPDQ--PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSEAALRQA  415 (574)
T ss_pred             EEEEEEEEECCCC--CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence            5666666655321  13467777775   9999999999999999999999 99999999999986541   12223345


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       416 i~~v~Q~~~lf~~ti~~Ni~~~  437 (574)
T PRK11160        416 ISVVSQRVHLFSATLRDNLLLA  437 (574)
T ss_pred             eeEEcccchhhcccHHHHhhcC
Confidence            56666666554 4555665543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.27  E-value=3.5e-12  Score=127.11  Aligned_cols=93  Identities=24%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|...  ...++++.+++   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.   .....+.
T Consensus       320 ~i~~~~v~f~y~~~--~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~I~~~g~~i~~~~~~~lr~  396 (529)
T TIGR02857       320 SLEFSGLSVAYPGR--RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL-GFVDPTEGSIAVNGVPLADADADSWRD  396 (529)
T ss_pred             eEEEEEEEEECCCC--CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEehhhCCHHHHHh
Confidence            35566666555321  12467777775   9999999999999999999999 99999999999986541   1222334


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .+..+++..+
T Consensus       397 ~i~~v~Q~~~lf~~ti~~Ni~~~  419 (529)
T TIGR02857       397 QIAWVPQHPFLFAGTIAENIRLA  419 (529)
T ss_pred             heEEEcCCCcccCcCHHHHHhcc
Confidence            566667766555 4556666554

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.27  E-value=2.7e-12  Score=132.15  Aligned_cols=91  Identities=14%  Similarity=0.095  Sum_probs=66.1

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|..   ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.   .....+..
T Consensus       474 I~~~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~-gl~~p~~G~I~idg~~i~~~~~~~lr~~  549 (708)
T TIGR01193       474 IVINDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV-GFFQARSGEILLNGFSLKDIDRHTLRQF  549 (708)
T ss_pred             EEEEEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence            566666666642   24567777775   9999999999999999999999 99999999999986542   11222345


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       550 i~~v~Q~~~lf~gTI~eNi~l~  571 (708)
T TIGR01193       550 INYLPQEPYIFSGSILENLLLG  571 (708)
T ss_pred             eEEEecCceehhHHHHHHHhcc
Confidence            56666666555 4566776654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.27  E-value=2.7e-12  Score=110.57  Aligned_cols=120  Identities=19%  Similarity=0.180  Sum_probs=77.0

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCcceeeeccccC--C--c
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGRTSSVGNDILG--F--D  261 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~--~--~  261 (320)
                      ..+++..++.   |+++.|+|.||||||||+++|+ |.+.|++|+|.+++.+.   ....+-++++.+||++..  +  .
T Consensus        19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~ia-G~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l   97 (263)
T COG1101          19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIA-GDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL   97 (263)
T ss_pred             HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhh-CccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence            3455555554   9999999999999999999999 99999999999986552   122234555566665532  2  3


Q ss_pred             cccceeecCCCC----CCCHHhHHHHHH---HHHHHhcccCCccccccccccccCCCCC
Q psy15138        262 SVGNVVNKPEHG----SLDWVKICERSA---KVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       262 ~~~~~v~~~~~~----~~~~~~~~~~~~---~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      +..+++.....+    .+...-..++.+   .-++-++ .|+++.+..++.-|||++..
T Consensus        98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~-lgLenrL~~~iglLSGGQRQ  155 (263)
T COG1101          98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLG-LGLENRLSDRIGLLSGGQRQ  155 (263)
T ss_pred             cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcc-cchhhhhcChhhhccchHHH
Confidence            445555443321    122211112222   2222233 47789999999999998754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=7.8e-12  Score=112.87  Aligned_cols=133  Identities=14%  Similarity=0.039  Sum_probs=74.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~----  242 (320)
                      +++++++++.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++  |   ++|+|.+++.+..    
T Consensus         5 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~~~~~~~   79 (252)
T PRK14255          5 IITSSDVHLFYG----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLN-RMNDLIPGVTITGNVSLRGQNIYAPNE   79 (252)
T ss_pred             eEEEEeEEEEEC----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-cccccCCCCCcccEEEEcCEEcccccc
Confidence            456666655443    34567777765   9999999999999999999999 9875  4   5899998764321    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...+ .+..+++..... ... ......+...+.++.+++. ++.+..++.+.+|||++.
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~  154 (252)
T PRK14255         80 DVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ  154 (252)
T ss_pred             cHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence             111122344445543222 233333332211 111 1111112223333333331 123567888999999653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.27  E-value=2.8e-12  Score=130.60  Aligned_cols=133  Identities=16%  Similarity=0.130  Sum_probs=82.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-h---
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-E---  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~---  244 (320)
                      .++++++.+.|.........+++++|.   |++++|+||||||||||+++|+ |+++|++|++.+++.+..   . +   
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILG-CLDKPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence            466676665553211123467777765   9999999999999999999999 999999999998764411   0 1   


Q ss_pred             hhcCcceeeeccccCCc--cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        245 MESGRTSSVGNDILGFD--SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~~--~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .....++..+|+...|+  +..+++..... ......   +..+++.++++.+|+.+..++.+..|||++
T Consensus        83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~---~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq  149 (648)
T PRK10535         83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK---QRLLRAQELLQRLGLEDRVEYQPSQLSGGQ  149 (648)
T ss_pred             HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHCCChhhhcCCcccCCHHH
Confidence            11223444444433332  33333332211 111112   223345566666777888999999999965

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=7.3e-12  Score=113.78  Aligned_cols=133  Identities=17%  Similarity=0.070  Sum_probs=75.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~----  242 (320)
                      .++++++.+.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|+     +|++.+++.+..    
T Consensus         7 ~l~~~nl~~~~~----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~g~i~~~G~i~~~g~~i~~~~~   81 (261)
T PRK14258          7 AIKVNNLSFYYD----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEVRVEGRVEFFNQNIYERRV   81 (261)
T ss_pred             eEEEeeEEEEeC----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHh-cccCCCCCccccceEEECCEEhhcccc
Confidence            466666655442    23466777765   9999999999999999999999 999985     788887654311    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...| .+..+++..... ... ...+..+...++++.+++.+ +.+..++.+..|||++.
T Consensus        82 ~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  156 (261)
T PRK14258         82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQ  156 (261)
T ss_pred             chHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence             011123344445543222 233333332111 111 11121223334444444321 23456888999999653

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.26  E-value=3.6e-12  Score=127.78  Aligned_cols=125  Identities=14%  Similarity=0.014  Sum_probs=76.8

Q ss_pred             eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      ++++++++.|..... ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ......
T Consensus       338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~-g~~~p~~G~i~~~g~~i~~~~~~~~~~  416 (555)
T TIGR01194       338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC-GLYIPQEGEILLDGAAVSADSRDDYRD  416 (555)
T ss_pred             EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            556666655532110 12467777775   9999999999999999999999 999999999999864421   112234


Q ss_pred             cceeeeccccCCc-cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccc------cccCCCC
Q psy15138        249 RTSSVGNDILGFD-SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVF------GMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~------~LSG~~~  312 (320)
                      .++.++|+...|. +..++.        ....   ..+++.+.++.+++.++....|.      .|||++.
T Consensus       417 ~i~~v~q~~~lf~~ti~~n~--------~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~  476 (555)
T TIGR01194       417 LFSAIFADFHLFDDLIGPDE--------GEHA---SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ  476 (555)
T ss_pred             hCcEEccChhhhhhhhhccc--------ccch---hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHH
Confidence            4556666655442 222221        1111   12234445556666666655554      4888653

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.26  E-value=6.5e-12  Score=113.04  Aligned_cols=49  Identities=22%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR  240 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~  240 (320)
                      ...+++++++.   |++++|+||||||||||+++|+ |++  +|++|++.+++.+
T Consensus        13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~G~i~~~g~~   66 (248)
T PRK09580         13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLA-GREDYEVTGGTVEFKGKD   66 (248)
T ss_pred             CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHc-CCccCCCCceEEEECCCc
Confidence            34567777765   9999999999999999999999 995  6999999987643

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=6.2e-12  Score=121.08  Aligned_cols=64  Identities=31%  Similarity=0.347  Sum_probs=61.3

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      ..++|+|+|||+-|.  +--|+.-.|.++|  ||++|+|+||||.|-+.+|++.++|++|++||+|..
T Consensus        55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaIL--VVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~  120 (509)
T COG0532          55 PGITFIDTPGHEAFTAMRARGASVTDIAIL--VVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP  120 (509)
T ss_pred             ceEEEEcCCcHHHHHHHHhcCCccccEEEE--EEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC
Confidence            579999999999999  6788999999999  999999999999999999999999999999999986

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.26  E-value=4.3e-12  Score=127.18  Aligned_cols=59  Identities=22%  Similarity=0.335  Sum_probs=48.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      .++++++++.|..   ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+.
T Consensus         6 ~l~i~~l~~~y~~---~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~-G~~~p~~G~i~~~   67 (556)
T PRK11819          6 IYTMNRVSKVVPP---KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-GVDKEFEGEARPA   67 (556)
T ss_pred             EEEEeeEEEEeCC---CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEec
Confidence            5666666544421   35577777776   9999999999999999999999 9999999999875

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.26  E-value=5.4e-12  Score=114.37  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .++++++.+.|...  ...++++++|.   |++++|+|+||||||||+++|+ |+++|.+|++.+++.+
T Consensus        19 ~i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~i~g~~   84 (257)
T cd03288          19 EIKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGKIVIDGID   84 (257)
T ss_pred             eEEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHH-cccCCCCCeEEECCEE
Confidence            45666665544321  12356666665   9999999999999999999999 9999999999987543

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.26  E-value=2.9e-12  Score=141.76  Aligned_cols=132  Identities=15%  Similarity=-0.002  Sum_probs=83.0

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcC
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESG  248 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g  248 (320)
                      ..++++++.+.|...  ...+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+...  .....
T Consensus      1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~-Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257      1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLT-GDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred             ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEECCEECcchHHHHhh
Confidence            356666665544210  14567777775   9999999999999999999999 9999999999998654211  11122


Q ss_pred             cceeeeccccC--Cccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        249 RTSSVGNDILG--FDSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~--~~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .++..+|....  ..++.+.+.. .........+.+   +.+.++++.+|+.++.++.+.+|||++
T Consensus      2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~---~~v~~lLe~lgL~~~~dk~~~~LSGGq 2075 (2272)
T TIGR01257      2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIE---KVANWSIQSLGLSLYADRLAGTYSGGN 2075 (2272)
T ss_pred             hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCCHHHhcCChhhCCHHH
Confidence            34444444222  2344444432 111222222222   234455666777888999999999964

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.26  E-value=6.9e-12  Score=122.62  Aligned_cols=108  Identities=17%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeec
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNK  269 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~  269 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++...       .+.+.+ .+....+..+++..
T Consensus        38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLa-GLl~P~sGeI~I~G~~~-------~i~~~~-~l~~~lTV~EnL~l  108 (549)
T PRK13545         38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIA-GVTMPNKGTVDIKGSAA-------LIAISS-GLNGQLTGIENIEL  108 (549)
T ss_pred             eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHh-CCCCCCceEEEECCEee-------eEEecc-ccCCCCcHHHHHHh
Confidence            467777775   9999999999999999999999 99999999999865321       111111 11111233333322


Q ss_pred             CC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        270 PE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       270 ~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .. .........   .+++.++++.+++.++.++.+..|||++.
T Consensus       109 ~~~~~~~~~~e~---~e~i~elLe~lgL~~~ld~~~~~LSGGQr  149 (549)
T PRK13545        109 KGLMMGLTKEKI---KEIIPEIIEFADIGKFIYQPVKTYSSGMK  149 (549)
T ss_pred             hhhhcCCCHHHH---HHHHHHHHHHcCChhHhhCCcccCCHHHH
Confidence            11 111222222   22334555666778888999999999654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.26  E-value=2e-12  Score=120.43  Aligned_cols=141  Identities=18%  Similarity=0.197  Sum_probs=93.9

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccc----
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRH----  241 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~----  241 (320)
                      .++++++.+-.+...-+...++++++|.   ||.+||||.||||||-..+.|. ++++.     .+|+|.+++.+.    
T Consensus         5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim-~LLp~~~~~~~sg~i~f~G~dll~~s   83 (534)
T COG4172           5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSIL-GLLPSPAAAHPSGSILFDGEDLLAAS   83 (534)
T ss_pred             cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHH-HhcCCCcccCccceeEEcChhhhcCC
Confidence            4566666655554444577889999887   9999999999999999999999 99874     368998886541    


Q ss_pred             ---hhhhhcCcceeeeccccC-Cccc---cceeecCC--CCCCCHHhHHHHHHHHHHHhcccCC---ccccccccccccC
Q psy15138        242 ---KHEMESGRTSSVGNDILG-FDSV---GNVVNKPE--HGSLDWVKICERSAKVITFIDLAGH---ERYLKTTVFGMTG  309 (320)
Q Consensus       242 ---~~~~~~g~v~~~~~~~~~-~~~~---~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl---~~~~~~~~~~LSG  309 (320)
                         ....+-..++.+||+++. +++.   +..+....  ...+.....   ..+++++++.+|+   +..++.+|++|||
T Consensus        84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~A---r~r~lelL~~VgI~~p~~rl~~yPHeLSG  160 (534)
T COG4172          84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAA---RARALELLELVGIPEPEKRLDAYPHELSG  160 (534)
T ss_pred             HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence               122333467777777654 2222   22222211  123333333   3455566666665   5689999999999


Q ss_pred             CCCCEEEEE
Q psy15138        310 HVPDFGMLM  318 (320)
Q Consensus       310 ~~~~~~~l~  318 (320)
                      ++...+|++
T Consensus       161 GqRQRVMIA  169 (534)
T COG4172         161 GQRQRVMIA  169 (534)
T ss_pred             chhhHHHHH
Confidence            988776653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=3.2e-12  Score=127.42  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=42.7

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      |+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++
T Consensus        11 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~   62 (530)
T PRK15064         11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILG-GDLEPSAGNVSLDP   62 (530)
T ss_pred             eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEecC
Confidence            3345577777776   9999999999999999999999 99999999998864

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=6.2e-12  Score=114.45  Aligned_cols=134  Identities=17%  Similarity=0.060  Sum_probs=76.4

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---  242 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---  242 (320)
                      ..++++++.+.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|     ++|+|.+++....   
T Consensus        15 ~~l~~~~l~~~~~----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~sG~i~~~g~~~~~~~   89 (265)
T PRK14252         15 QKSEVNKLNFYYG----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFN-RMHDLYPGNHYEGEIILHPDNVNILS   89 (265)
T ss_pred             ceEEEEEEEEEEC----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-cccCCCCCCCcccEEEEcCccccccc
Confidence            4566776655543    33567776665   9999999999999999999999 99875     6899988643210   


Q ss_pred             ----hhhhcCcceeeeccccCCc-cccceeecCCC-CCCC-HHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 ----HEMESGRTSSVGNDILGFD-SVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ----~~~~~g~v~~~~~~~~~~~-~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                          .......++..+|+...|. +..+++..... .... +....+....+++.+++. ++.+..++.+..|||++.
T Consensus        90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  167 (265)
T PRK14252         90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ  167 (265)
T ss_pred             cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence                0111223444444432221 33344332211 1111 111122333444444332 224566788899999643

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.25  E-value=5.1e-12  Score=127.14  Aligned_cols=93  Identities=20%  Similarity=0.165  Sum_probs=64.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|.... ...++++.++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.   ........
T Consensus       338 i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~-gl~~p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       338 IEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             EEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence            55666655553211 13467777765   9999999999999999999999 99999999999986441   11122234


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       416 i~~~~Q~~~lf~~Ti~~Ni~~~  437 (576)
T TIGR02204       416 MALVPQDPVLFAASVMENIRYG  437 (576)
T ss_pred             ceEEccCCccccccHHHHHhcC
Confidence            56666666555 4566776654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.25  E-value=5.2e-12  Score=115.57  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++++.|..  +...++++++|.   |++++|+||||||||||+++|+ |+++ .+|+|.+++.+..   .......
T Consensus         3 i~~~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~-gl~~-~~G~I~i~g~~i~~~~~~~lr~~   78 (275)
T cd03289           3 MTVKDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLN-TEGDIQIDGVSWNSVPLQKWRKA   78 (275)
T ss_pred             EEEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-hhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence            345555444421  123466777765   9999999999999999999999 9998 7899999864421   1112234


Q ss_pred             ceeeeccccCCc-cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccccc-----------ccCCCC
Q psy15138        250 TSSVGNDILGFD-SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFG-----------MTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~-----------LSG~~~  312 (320)
                      ++.++|+...|. ++.+++...  ....       .+++.+.++.+|+.++.+++|.+           |||++.
T Consensus        79 i~~v~q~~~lf~~tv~~nl~~~--~~~~-------~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~  144 (275)
T cd03289          79 FGVIPQKVFIFSGTFRKNLDPY--GKWS-------DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK  144 (275)
T ss_pred             EEEECCCcccchhhHHHHhhhc--cCCC-------HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence            555555544442 333333211  1111       12344555567778888888887           888653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.25  E-value=5e-12  Score=127.09  Aligned_cols=92  Identities=21%  Similarity=0.269  Sum_probs=65.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...  ...+++++++.   |++++|+|+||||||||+++|+ |+++|.+|+|.+++.+.   ........
T Consensus       331 i~~~~v~f~y~~~--~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~-gl~~~~~G~I~i~g~~i~~~~~~~~~~~  407 (571)
T TIGR02203       331 VEFRNVTFRYPGR--DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP-RFYEPDSGQILLDGHDLADYTLASLRRQ  407 (571)
T ss_pred             EEEEEEEEEcCCC--CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence            5555555555321  13467777775   9999999999999999999999 99999999999986541   12223455


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       408 i~~v~Q~~~lf~~Ti~~Ni~~~  429 (571)
T TIGR02203       408 VALVSQDVVLFNDTIANNIAYG  429 (571)
T ss_pred             ceEEccCcccccccHHHHHhcC
Confidence            67777776665 4556666554

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.25  E-value=3.3e-12  Score=108.41  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=90.9

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc-c----chhh---hhcCccee
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF-R----HKHE---MESGRTSS  252 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~-~----~~~~---~~~g~v~~  252 (320)
                      +++.+++.++++++.+|.   |+.-+|+|||||||||++-+|+ |..+|+.|++.+.+. +    ..++   .-+|+-+|
T Consensus        10 ~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It-GKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ   88 (249)
T COG4674          10 GVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT-GKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQ   88 (249)
T ss_pred             ceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec-ccCCCCcceEEEcCchhhccCCHHHHHHhccCcccc
Confidence            556778888899988886   9999999999999999999999 999999999998752 2    1222   23566666


Q ss_pred             eeccccCCccccceeecCCCCCCC-HHh-----HHHHHHHHHHHhcccCCccccccccccccCCC---CCEEEEE
Q psy15138        253 VGNDILGFDSVGNVVNKPEHGSLD-WVK-----ICERSAKVITFIDLAGHERYLKTTVFGMTGHV---PDFGMLM  318 (320)
Q Consensus       253 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~-----~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~---~~~~~l~  318 (320)
                      .+.-+..+ ++.+++........+ |..     ..+...++.+.+...|+.+..+.....||=++   ...+||+
T Consensus        89 ~PtVfe~l-tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll  162 (249)
T COG4674          89 KPTVFENL-TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL  162 (249)
T ss_pred             CCeehhhc-cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence            65543333 445555444332221 111     12234566777778888888888888888643   4445554

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=7.9e-12  Score=116.12  Aligned_cols=61  Identities=21%  Similarity=0.120  Sum_probs=48.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~  240 (320)
                      .+.+.++.+.|    +...++++++|.   |++++|+||||||||||+++|+ |+++     |.+|+|.+++.+
T Consensus        45 ~l~i~nl~~~~----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~-Gl~~~~~~~p~~G~I~i~g~~  113 (305)
T PRK14264         45 KLSVEDLDVYY----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN-RMNDRIKAARIDGSVELDGQD  113 (305)
T ss_pred             eEEEEEEEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEE
Confidence            45666655444    334567777775   9999999999999999999999 9986     689999987543

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.24  E-value=9.1e-12  Score=113.83  Aligned_cols=130  Identities=20%  Similarity=0.077  Sum_probs=76.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----  242 (320)
                      .++++++++.|.    ...++++++|.   |++++|+||||||||||+++|+ |+++|     .+|++.+++.+..    
T Consensus        25 ~l~~~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~la-Gl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         25 ALEVRNLNLFYG----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             EEEEEEEEEEEC----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHH-hcCCCccCCCCceEEEECCEECccccc
Confidence            466666655442    23466666665   9999999999999999999999 99874     7999998754321    


Q ss_pred             -hhhhcCcceeeeccccCCc-cccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGFD-SVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~~-~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~  312 (320)
                       .......++.++|+...|. +..+++..... ... ......+.   +.+.++.+++.    +..++.+..|||++.
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  174 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA---VERSLRGAALWDEVKDRLHENAFGLSGGQQ  174 (272)
T ss_pred             CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence             1111234455555433222 44444432211 111 11111222   33344444443    456788999999653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.24  E-value=3.7e-12  Score=114.75  Aligned_cols=98  Identities=14%  Similarity=0.111  Sum_probs=62.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCCCHHhH
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKI  280 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  280 (320)
                      .|++++|+||||||||||+++|+ |+++|++|++.+++.      .+++++|....... .++.+++...... ..  ..
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~-G~~~p~~G~i~~~g~------~i~~~~q~~~~~~~-~tv~e~l~~~~~~-~~--~~   92 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLA-GVLKPDEGDIEIELD------TVSYKPQYIKADYE-GTVRDLLSSITKD-FY--TH   92 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh-CCCcCCCCeEEECCc------eEEEecccccCCCC-CCHHHHHHHHhhh-cc--cc
Confidence            39999999999999999999999 999999999987642      23444443221111 2333333221110 00  00


Q ss_pred             HHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        281 CERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       281 ~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .   ....++++.+++.+..++.+..|||++.
T Consensus        93 ~---~~~~~~l~~l~l~~~~~~~~~~LSgGe~  121 (246)
T cd03237          93 P---YFKTEIAKPLQIEQILDREVPELSGGEL  121 (246)
T ss_pred             H---HHHHHHHHHcCCHHHhhCChhhCCHHHH
Confidence            1   1123455566777888999999999653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.24  E-value=3.7e-12  Score=140.96  Aligned_cols=132  Identities=15%  Similarity=0.117  Sum_probs=84.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGR  249 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~  249 (320)
                      .++++++.+.|..  +.+.+++++++.   |++++|+||||||||||+++|+ |+++|++|++.+++.+...  ...+..
T Consensus       928 ~L~I~nLsK~y~~--~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLa-GLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257       928 GVCVKNLVKIFEP--SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILT-GLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred             eEEEEeEEEEecC--CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHh-cCCCCCceEEEECCEECcchHHHHhhc
Confidence            4556655544421  124567777765   9999999999999999999999 9999999999988654211  111233


Q ss_pred             ceeeeccccCC--ccccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...+  .++.+++.... .......+.   .+++.++++.+|+.++.++.+.+|||++.
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~---~~~v~~lL~~vgL~~~~~~~~~~LSGGqK 1067 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA---QLEMEAMLEDTGLHHKRNEEAQDLSGGMQ 1067 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            45555553333  34455544321 122222222   23455566667778889999999999653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.24  E-value=6.7e-12  Score=113.64  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=35.9

Q ss_pred             ccccCCc--cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138        194 RVESQDF--LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR  235 (320)
Q Consensus       194 ~l~~~~~--~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~  235 (320)
                      +++++++  +|++++|+||||||||||+++|+ |+++|++|+|+
T Consensus        16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~-Gl~~p~~G~I~   58 (255)
T cd03236          16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILA-GKLKPNLGKFD   58 (255)
T ss_pred             hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHh-CCcCCCCceEe
Confidence            4444443  49999999999999999999999 99999999996

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.24  E-value=8.1e-12  Score=123.20  Aligned_cols=52  Identities=37%  Similarity=0.502  Sum_probs=45.6

Q ss_pred             eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      ++..|+.+..++++++.   |+|+||||+||+|||||||+|+ |.+.|++|+|...
T Consensus         9 ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkila-G~~~~~~G~i~~~   63 (530)
T COG0488           9 LSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILA-GELEPDSGEVTRP   63 (530)
T ss_pred             eEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHc-CCCcCCCCeEeec
Confidence            44555677788888876   9999999999999999999999 9999999999874

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.24  E-value=5.6e-12  Score=127.20  Aligned_cols=91  Identities=23%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|..   ...+++++++.   |++++|+|+||||||||+++|+ |+++|.+|.|.+++.+.   .....+..
T Consensus       335 I~~~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~  410 (588)
T PRK13657        335 VEFDDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ-RVFDPQSGRILIDGTDIRTVTRASLRRN  410 (588)
T ss_pred             EEEEEEEEEeCC---CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence            555555555532   13467777775   9999999999999999999999 99999999999986441   12223345


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       411 i~~v~Q~~~lf~~Ti~~Ni~~~  432 (588)
T PRK13657        411 IAVVFQDAGLFNRSIEDNIRVG  432 (588)
T ss_pred             eEEEecCcccccccHHHHHhcC
Confidence            66667766555 4566666554

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.23  E-value=8e-12  Score=126.95  Aligned_cols=84  Identities=24%  Similarity=0.286  Sum_probs=72.8

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVLQD   86 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~le~   86 (320)
                      .+..+.|+|+|||++|.  |+.++..+|.+++  ||++++|+++||++|+.++..+++ +.+|++||+|++  +.+++++
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~ll--Vvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAII--LVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEE--EEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence            45578999999999999  9999999999999  999999999999999999999999 567889999997  3566777


Q ss_pred             HHHHHHHhhcC
Q psy15138         87 TLKLLVRILKS   97 (320)
Q Consensus        87 ~l~~~~~~l~~   97 (320)
                      ...++..+++.
T Consensus       180 i~~~i~~~~~~  190 (632)
T PRK05506        180 IVADYRAFAAK  190 (632)
T ss_pred             HHHHHHHHHHH
Confidence            77777765543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.4e-11  Score=107.20  Aligned_cols=48  Identities=19%  Similarity=0.168  Sum_probs=42.4

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR  240 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~  240 (320)
                      +++++.+++.   |+..+|+||||||||||.++|+ |.-  .+++|+|.+++.+
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~-G~p~Y~Vt~G~I~~~Ged   69 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM-GHPKYEVTEGEILFDGED   69 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHh-CCCCceEecceEEECCcc
Confidence            4778887776   9999999999999999999999 985  6789999998765

>PRK00098 GTPase RsgA; Reviewed

Probab=99.23  E-value=2.3e-10  Score=105.91  Aligned_cols=45  Identities=27%  Similarity=0.315  Sum_probs=36.1

Q ss_pred             CCccchhhhccceecCCCCc--hhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         33 ASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        33 ~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      +.++|.+++  |++++++..  ....+.+..++..++|+++|+||+|+.
T Consensus        78 aaniD~vll--V~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~  124 (298)
T PRK00098         78 AANVDQAVL--VFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL  124 (298)
T ss_pred             eecCCEEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence            489999988  999976543  233457777888899999999999996

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.22  E-value=9.2e-12  Score=109.99  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=40.6

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.
T Consensus        15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~   63 (218)
T cd03290          15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAIL-GEMQTLEGKVHWSNK   63 (218)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCeEEECCc
Confidence            456666665   9999999999999999999999 999999999998754

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.22  E-value=4e-12  Score=119.08  Aligned_cols=102  Identities=17%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             EEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHH
Q psy15138        207 VVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICE  282 (320)
Q Consensus       207 ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~  282 (320)
                      |+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...|  .++.+++.++.. .......   
T Consensus         1 l~G~nGsGKSTLl~~ia-Gl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---   76 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLA-GFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE---   76 (325)
T ss_pred             CcCCCCCCHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH---
Confidence            58999999999999999 9999999999987643211 11122344455543333  245555544321 1122222   


Q ss_pred             HHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        283 RSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       283 ~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ...++.++++.+++.++.++.+.+|||++.
T Consensus        77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~  106 (325)
T TIGR01187        77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQ  106 (325)
T ss_pred             HHHHHHHHHHHcCCcchhcCChhhCCHHHH
Confidence            223445566677778889999999999653

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK12289 GTPase RsgA; Reviewed

Probab=99.22  E-value=5.6e-11  Score=112.01  Aligned_cols=54  Identities=17%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             CCCccchhhhccceecCCCC-ch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHH
Q psy15138         32 EASPADHSMLQSKVGANAGI-VG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        32 ~~~~~d~~~l~~vv~a~~g~-~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      .+.++|.+++  |++++++. .+ ...+.|..+...++|+++|+||+||++.+.++.+
T Consensus        86 ~~aNvD~vLl--V~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~  141 (352)
T PRK12289         86 PVANADQILL--VFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQW  141 (352)
T ss_pred             hhhcCCEEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHH
Confidence            3889999988  99998654 33 4466888888889999999999999876554443

>KOG0055|consensus

Probab=99.21  E-value=6.7e-12  Score=131.06  Aligned_cols=97  Identities=16%  Similarity=0.122  Sum_probs=72.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++.+.|+.+. ..++++++++.   |+.++|||||||||||++++|. ++++|.+|+|.+++.+..   ....+.
T Consensus       350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~~G~V~idG~di~~~~~~~lr~  427 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPTSGEVLIDGEDIRNLNLKWLRS  427 (1228)
T ss_pred             ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCceEEEcCccchhcchHHHHh
Confidence            467787777776543 34566666665   9999999999999999999999 999999999999866521   122344


Q ss_pred             cceeeeccccCC-ccccceeecCCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHG  273 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~  273 (320)
                      .++.++|++..| .+..+++.++...
T Consensus       428 ~iglV~QePvlF~~tI~eNI~~G~~d  453 (1228)
T KOG0055|consen  428 QIGLVSQEPVLFATTIRENIRYGKPD  453 (1228)
T ss_pred             hcCeeeechhhhcccHHHHHhcCCCc
Confidence            566666666655 5678888876644

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.4e-11  Score=115.49  Aligned_cols=135  Identities=16%  Similarity=0.058  Sum_probs=81.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK----  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~----  242 (320)
                      .++++++++.|..  ....++++++|.   |++++|+||||||||||+++|+ |+.+     |.+|+|.+++.+..    
T Consensus        80 ~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~-g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         80 VFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN-QLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             eEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEEcccccc
Confidence            5677776665532  123467777765   9999999999999999999999 9986     57999998765421    


Q ss_pred             -hhhhcCcceeeeccccCC-ccccceeecCC-CCCCCHHh-HHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138        243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPE-HGSLDWVK-ICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~-~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~  312 (320)
                       .....+.++.++|....| .+..+++.++. .......+ ..+....+++.+++. ++....+..+..|||++.
T Consensus       157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqk  231 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ  231 (329)
T ss_pred             chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHH
Confidence             112234566666665444 34445554322 11111111 111233344443331 234567788999999654

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.21  E-value=1.2e-11  Score=125.34  Aligned_cols=119  Identities=18%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---CceeeeccccchhhhhcCcceeeeccccCC--cc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHKHEMESGRTSSVGNDILGF--DS  262 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~  262 (320)
                      .+.+++++++.   |+.++|+|||||||||||++|+ |..+++   +|+|.+++...........++.++|+...+  .+
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~-g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT  115 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT  115 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence            34567777775   9999999999999999999999 998885   799998865432212222334444443332  35


Q ss_pred             ccceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCccccccccc------cccCCCCC
Q psy15138        263 VGNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTVF------GMTGHVPD  313 (320)
Q Consensus       263 ~~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~------~LSG~~~~  313 (320)
                      +.+++.+....    .....   ++..++.+.++..|+.+..++.+.      +|||++.-
T Consensus       116 V~e~l~f~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrk  173 (617)
T TIGR00955       116 VREHLMFQAHLRMPRRVTKK---EKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK  173 (617)
T ss_pred             HHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhh
Confidence            66666543221    12222   233445556666677777777765      69997753

>KOG0055|consensus

Probab=99.21  E-value=1.6e-11  Score=128.32  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++.|.|+ ..+..+++++.+++   |+.+||||||||||||.+.+|- ++++|.+|.|.+++.+.   .....+.
T Consensus       987 ~I~~~~V~F~YP-sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen  987 DIEFRNVSFAYP-TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred             EEEEeeeEeeCC-CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCCeEEECCcccccCCHHHHHH
Confidence            467788888886 33456667777765   9999999999999999999999 99999999999986552   1122345


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhc-c-cCCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFID-L-AGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~-l-~gl~~~~~~~~~~LSG~~  311 (320)
                      .++.+.|++..| .+..+|+.++... .+..++.+.  ..-+.+++. + -|++-.....-.+|||++
T Consensus      1065 ~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQ 1131 (1228)
T KOG0055|consen 1065 QIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQ 1131 (1228)
T ss_pred             hcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchH
Confidence            566777777776 4678888887333 444443322  122223322 2 133333444446889875

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.3e-11  Score=111.20  Aligned_cols=132  Identities=17%  Similarity=0.093  Sum_probs=73.8

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK-----  242 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~-----  242 (320)
                      ++++++...|    +...++++++|.   |++++|+||||||||||+++|+ |+++     |++|+|.+++.+..     
T Consensus         4 l~~~~v~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~i~~~~~~   78 (250)
T PRK14266          4 IEVENLNTYF----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLDGVDIYDPAVD   78 (250)
T ss_pred             EEEEeEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhhccCCCCCCccEEEECCEEccccccc
Confidence            4455554433    234466666665   9999999999999999999999 9864     38999998764421     


Q ss_pred             hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138        243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP  312 (320)
Q Consensus       243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~  312 (320)
                      .......++.++|+...| .+..+++..... .. .......+...++++.+++.. +.+..++.+..|||++.
T Consensus        79 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~  152 (250)
T PRK14266         79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ  152 (250)
T ss_pred             HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence            111123445555553322 234444433211 11 111122223333333333311 13446788899999653

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.20  E-value=1.2e-11  Score=127.13  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=63.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...  ...+++++++.   |++++|+|+||||||||+++|+ |+++|++|+|.+++.+.   .....+..
T Consensus       456 i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~-g~~~p~~G~I~idg~~i~~~~~~~~r~~  532 (694)
T TIGR01846       456 ITFENIRFRYAPD--SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ-RLYTPQHGQVLVDGVDLAIADPAWLRRQ  532 (694)
T ss_pred             EEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEehhhCCHHHHHHh
Confidence            4555555555321  23467777775   9999999999999999999999 99999999999986542   11222344


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       533 i~~v~q~~~lf~~ti~eNi~~~  554 (694)
T TIGR01846       533 MGVVLQENVLFSRSIRDNIALC  554 (694)
T ss_pred             CeEEccCCeehhhhHHHHHhcC
Confidence            55666665544 4556666553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.20  E-value=1.4e-11  Score=123.21  Aligned_cols=82  Identities=22%  Similarity=0.100  Sum_probs=59.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|..   ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ....+.
T Consensus       322 ~i~~~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g~~~~~~~~~~~~~  397 (547)
T PRK10522        322 TLELRNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT-GLYQPQSGEILLDGKPVTAEQPEDYRK  397 (547)
T ss_pred             eEEEEEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEECCCCCHHHHhh
Confidence            3556666655532   13467777775   9999999999999999999999 999999999999865421   122234


Q ss_pred             cceeeeccccCC
Q psy15138        249 RTSSVGNDILGF  260 (320)
Q Consensus       249 ~v~~~~~~~~~~  260 (320)
                      .++.++|+...|
T Consensus       398 ~i~~v~q~~~lf  409 (547)
T PRK10522        398 LFSAVFTDFHLF  409 (547)
T ss_pred             heEEEecChhHH
Confidence            566677766554

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.20  E-value=3e-11  Score=115.46  Aligned_cols=76  Identities=16%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccCCcc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILGFDS  262 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~~~~  262 (320)
                      +..+++++|.   |+.++||||||||||||.|+|. |..+|.+|.+++++.+.      .....+||.+|..+.+.  .+
T Consensus       349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv-G~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~--GT  425 (580)
T COG4618         349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLV-GIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD--GT  425 (580)
T ss_pred             CcceecceeEecCCceEEEECCCCccHHHHHHHHH-cccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC--Cc
Confidence            4678888886   9999999999999999999999 99999999999986541      12234666666655433  35


Q ss_pred             ccceeecC
Q psy15138        263 VGNVVNKP  270 (320)
Q Consensus       263 ~~~~v~~~  270 (320)
                      +.+|+...
T Consensus       426 IaeNIaRf  433 (580)
T COG4618         426 IAENIARF  433 (580)
T ss_pred             HHHHHHhc
Confidence            55665543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.19  E-value=5.5e-11  Score=107.01  Aligned_cols=74  Identities=20%  Similarity=0.159  Sum_probs=52.1

Q ss_pred             cccccccCCCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138          3 SIVDQTPCTAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus         3 ~~~~~~~~~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      -||.+.+.+ + .-++| +--+|||-  .=+-+.++|.+++  |.+++++..  ....+.+..+...++|+++|+||+||
T Consensus         5 D~V~~~~~~-~-~~~~i-~~i~eR~~~L~r~~~~n~D~vii--V~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL   79 (245)
T TIGR00157         5 DRVVWEPGN-V-VKVYG-GAIAERKNELTRPIVANIDQIVI--VSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDL   79 (245)
T ss_pred             cEEEEEecC-C-CceEE-EEEecccceEECcccccCCEEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECccc
Confidence            477776542 2 22344 24568887  2234889999999  999987553  34456777888888999999999999


Q ss_pred             CCh
Q psy15138         79 CPP   81 (320)
Q Consensus        79 ~~~   81 (320)
                      .+.
T Consensus        80 ~~~   82 (245)
T TIGR00157        80 LDD   82 (245)
T ss_pred             CCC
Confidence            754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1145|consensus

Probab=99.19  E-value=5e-11  Score=114.46  Aligned_cols=65  Identities=26%  Similarity=0.305  Sum_probs=61.3

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      -..++|+|+|||..|-  +--|+...|.++|  ||+|++|+||||.|-+..|+.-++|++|++||+|..
T Consensus       200 G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL--VVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp  266 (683)
T KOG1145|consen  200 GKSITFLDTPGHAAFSAMRARGANVTDIVVL--VVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP  266 (683)
T ss_pred             CCEEEEecCCcHHHHHHHHhccCccccEEEE--EEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC
Confidence            3569999999999999  6889999999999  999999999999999999999999999999999975

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.19  E-value=1.1e-11  Score=135.24  Aligned_cols=117  Identities=21%  Similarity=0.124  Sum_probs=75.6

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeeccccchhhhhcCcceeeecccc--CCccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFRHKHEMESGRTSSVGNDIL--GFDSV  263 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~--~~~~~  263 (320)
                      +.+++++++.   |+.++|+|||||||||||++|+ |..+   |++|+|.+++.+.... ....++.++|+..  ...++
T Consensus       776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~La-g~~~~g~~~~G~I~i~G~~~~~~-~~~~i~yv~Q~~~~~~~~Tv  853 (1394)
T TIGR00956       776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA-ERVTTGVITGGDRLVNGRPLDSS-FQRSIGYVQQQDLHLPTSTV  853 (1394)
T ss_pred             cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh-CCCCCCCcceeEEEECCEECChh-hhcceeeecccccCCCCCCH
Confidence            4577887775   9999999999999999999999 9987   6789999986543211 1223444444422  22355


Q ss_pred             cceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCccccccccc----cccCCCCC
Q psy15138        264 GNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTVF----GMTGHVPD  313 (320)
Q Consensus       264 ~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~----~LSG~~~~  313 (320)
                      .+++......    .....+   ..+++.++++.+|+.+..++.+.    +|||++..
T Consensus       854 ~E~L~~~a~l~~~~~~~~~~---~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrq  908 (1394)
T TIGR00956       854 RESLRFSAYLRQPKSVSKSE---KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRK  908 (1394)
T ss_pred             HHHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhh
Confidence            5555443211    122222   23344555566667777788776    79997654

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.19  E-value=3.2e-11  Score=102.75  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      ...++++++.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus        13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~   63 (173)
T cd03230          13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL-GLLKPDSGEIKVLGKD   63 (173)
T ss_pred             eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEE
Confidence            3466777665   9999999999999999999999 9999999999987543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.19  E-value=1.8e-11  Score=122.67  Aligned_cols=59  Identities=22%  Similarity=0.332  Sum_probs=47.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      .++++++++.|..   ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.++
T Consensus         4 ~i~~~nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~-G~~~p~~G~i~~~   65 (552)
T TIGR03719         4 IYTMNRVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-GVDKEFNGEARPA   65 (552)
T ss_pred             EEEEeeEEEecCC---CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEec
Confidence            4566665554421   34577777775   9999999999999999999999 9999999999875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.19  E-value=9.3e-12  Score=109.75  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=35.8

Q ss_pred             cccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138        195 VESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR  235 (320)
Q Consensus       195 l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~  235 (320)
                      +++++|.   |++++|+||||||||||+++|+ |+++|++|++.
T Consensus         3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~~~sG~i~   45 (213)
T PRK15177          3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLC-GLDAPDEGDFI   45 (213)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCccCCCCCEE
Confidence            4455554   9999999999999999999999 99999999986

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.18  E-value=1.8e-11  Score=122.39  Aligned_cols=133  Identities=20%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++++.|..+  ...+++++++.   |++++|+||||||||||+++|+ |+++|++|++.+++.+..   .......
T Consensus       317 i~~~~v~~~y~~~--~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g~~i~~~~~~~~~~~  393 (544)
T TIGR01842       317 LSVENVTIVPPGG--KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIV-GIWPPTSGSVRLDGADLKQWDRETFGKH  393 (544)
T ss_pred             EEEEEEEEEcCCC--CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEehhhCCHHHHhhh
Confidence            5556655555321  13467777775   9999999999999999999999 999999999998764411   1122334


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...| .+..+++..... .....+..+..  ..+.++++..  |+..........|||++.
T Consensus       394 i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~  460 (544)
T TIGR01842       394 IGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR  460 (544)
T ss_pred             eEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence            55666665544 345555543221 12222221111  1112233322  444455556778998653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.18  E-value=3.7e-11  Score=105.28  Aligned_cols=63  Identities=22%  Similarity=0.266  Sum_probs=47.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .++++++.+.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|.+|++.+++..
T Consensus         6 ~l~~~~l~~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~   71 (207)
T cd03369           6 EIEVENLSVRYAPD--LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAEEGKIEIDGID   71 (207)
T ss_pred             eEEEEEEEEEeCCC--CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCeEEECCEE
Confidence            34555554444211  12466676665   9999999999999999999999 9999999999987543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.18  E-value=1.9e-11  Score=122.93  Aligned_cols=92  Identities=21%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++++.|..  ....+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   .......
T Consensus       314 I~~~~v~~~y~~--~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~i~~~g~~~~~~~~~~~~~~  390 (569)
T PRK10789        314 LDVNIRQFTYPQ--TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-RHFDVSEGDIRFHDIPLTKLQLDSWRSR  390 (569)
T ss_pred             EEEEEEEEECCC--CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence            455555544432  123467777775   9999999999999999999999 999999999998754421   1122334


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+++..+
T Consensus       391 i~~v~q~~~lf~~ti~~Ni~~~  412 (569)
T PRK10789        391 LAVVSQTPFLFSDTVANNIALG  412 (569)
T ss_pred             eEEEccCCeeccccHHHHHhcC
Confidence            55556655444 4556666543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.18  E-value=3.4e-11  Score=101.68  Aligned_cols=51  Identities=24%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      |+...+++++++.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus        10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~v~~~g~~   63 (163)
T cd03216          10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILS-GLYKPDSGEILVDGKE   63 (163)
T ss_pred             ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEE
Confidence            3334566776665   9999999999999999999999 9999999999987543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=3.2e-11  Score=100.80  Aligned_cols=130  Identities=19%  Similarity=0.245  Sum_probs=78.1

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----------
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----------  241 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----------  241 (320)
                      ++++.++++    .|+.....++++|.   ||.++|+|.|||||||||++|+ +.+.|+.|.+.+.....          
T Consensus         6 LL~V~~lsk----~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is-~rl~p~~G~v~Y~~r~~~~~dl~~msE   80 (258)
T COG4107           6 LLSVSGLSK----LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCIS-GRLTPDAGTVTYRMRDGQPRDLYTMSE   80 (258)
T ss_pred             ceeehhhhh----hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHh-cccCCCCCeEEEEcCCCCchhHhhhch
Confidence            445554443    44555556667775   9999999999999999999999 99999999998763220          


Q ss_pred             -h----hhhhcCcceeeeccccCCc-ccccee-ecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        242 -K----HEMESGRTSSVGNDILGFD-SVGNVV-NKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       242 -~----~~~~~g~v~~~~~~~~~~~-~~~~~v-~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                       .    .+...|.+.|++.+-+.+. +.+-++ ...+. .......+.+.+..+++-++..  ....+..|...||+.
T Consensus        81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~--~~RiDD~PrtFSGGM  156 (258)
T COG4107          81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID--LDRIDDLPRTFSGGM  156 (258)
T ss_pred             HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC--cccccCcccccchHH
Confidence             0    1123466666665544321 112222 11111 1111223444555555555442  356788899999964

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.18  E-value=2.9e-11  Score=121.91  Aligned_cols=132  Identities=20%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...   ..+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.   ........
T Consensus       335 i~~~~v~~~y~~~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g~~~~~~~~~~~~~~  410 (585)
T TIGR01192       335 VEFRHITFEFANS---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVTRESLRKS  410 (585)
T ss_pred             EEEEEEEEECCCC---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc-cCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence            4555555554321   3457777775   9999999999999999999999 99999999999875431   11122334


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHH--HHHHh-cc-cCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAK--VITFI-DL-AGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~--~l~~l-~l-~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...| .+..+++..+... ....+..+..+.  +.+.+ .+ .|+..........|||++.
T Consensus       411 i~~v~q~~~lf~~ti~~Ni~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~  477 (585)
T TIGR01192       411 IATVFQDAGLFNRSIRENIRLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER  477 (585)
T ss_pred             eEEEccCCccCcccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence            55566655443 3455555543221 222222211111  11222 22 2344455666778998653

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=1.7e-11  Score=124.61  Aligned_cols=52  Identities=25%  Similarity=0.266  Sum_probs=44.7

Q ss_pred             eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      +..|+.+.++++++|.   |++++|+||||||||||||+|+ |.++|++|+|.+..
T Consensus         8 s~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~-G~~~pd~G~I~~~~   62 (638)
T PRK10636          8 QIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLK-NEISADGGSYTFPG   62 (638)
T ss_pred             EEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEecC
Confidence            3445556678888876   9999999999999999999999 99999999998753

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.17  E-value=4.9e-11  Score=102.13  Aligned_cols=48  Identities=23%  Similarity=0.227  Sum_probs=41.6

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+
T Consensus        13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~   63 (178)
T cd03229          13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA-GLEEPDSGSILIDGED   63 (178)
T ss_pred             eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEE
Confidence            4466666665   9999999999999999999999 9999999999987543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.17  E-value=5.3e-11  Score=99.53  Aligned_cols=107  Identities=17%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccCCccccceeecCCCCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILGFDSVGNVVNKPEHGS  274 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~  274 (320)
                      .|+.+=+||||||||||||..++ |++ |.+|+|.+.+...      .....+.|.+|...-.+.++ +...+..    .
T Consensus        24 aGe~~HliGPNGaGKSTLLA~lA-Gm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mp-V~~YL~L----~   96 (248)
T COG4138          24 AGEILHLVGPNGAGKSTLLARMA-GMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMP-VWHYLTL----H   96 (248)
T ss_pred             cceEEEEECCCCccHHHHHHHHh-CCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhh-hhhhhhh----c
Confidence            39999999999999999999999 985 6799999986552      12234566666433222221 1111111    1


Q ss_pred             CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEE
Q psy15138        275 LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGML  317 (320)
Q Consensus       275 ~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l  317 (320)
                      .+.   ++....+.+..++.++.+++.+.+++|||+.=..+-|
T Consensus        97 qP~---~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRL  136 (248)
T COG4138          97 QPD---KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL  136 (248)
T ss_pred             Cch---HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEE
Confidence            111   3445566667777888999999999999976554443

>PLN03232 ABC transporter C family member; Provisional

Probab=99.16  E-value=3.2e-11  Score=132.78  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=67.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|..+  ...+++++++.   |+++||+|+||||||||+++|. |+++|++|+|.+++.+.   .....+..
T Consensus      1235 I~f~nVsf~Y~~~--~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~-rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232       1235 IKFEDVHLRYRPG--LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred             EEEEEEEEEECCC--CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence            5666666655321  23578888776   9999999999999999999999 99999999999986552   22233456


Q ss_pred             ceeeeccccCC-ccccceeecC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      ++.++|+...| .+..+|+...
T Consensus      1312 i~iVpQdp~LF~gTIr~NL~~~ 1333 (1495)
T PLN03232       1312 LSIIPQSPVLFSGTVRFNIDPF 1333 (1495)
T ss_pred             cEEECCCCeeeCccHHHHcCCC
Confidence            77777776665 4566666553

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.16  E-value=4.7e-11  Score=102.59  Aligned_cols=46  Identities=22%  Similarity=0.182  Sum_probs=40.2

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      +++++++.   |++++|+||||||||||+++|+ |+++|++|++.+++.+
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~   63 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALF-GLRPPASGEITLDGKP   63 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEE
Confidence            45555554   9999999999999999999999 9999999999987643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.15  E-value=2.5e-11  Score=132.85  Aligned_cols=94  Identities=16%  Similarity=0.098  Sum_probs=70.4

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----------------------
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----------------------  229 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----------------------  229 (320)
                      ++++++++.|... +..+++++++|.   |+++|||||||||||||+++|. |+++|                       
T Consensus      1166 I~f~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~-r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1166 IEIMDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLM-RFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             EEEEEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHH-HhCCCccccccccccccccccccccccc
Confidence            6677777776432 123578888776   9999999999999999999999 99998                       


Q ss_pred             -------------------------------CCceeeeccccc---hhhhhcCcceeeeccccCC-ccccceeecCC
Q psy15138        230 -------------------------------GRGHARQKLFRH---KHEMESGRTSSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       230 -------------------------------~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                                                     .+|+|.+++.+.   .....+..++.++|+...| .+..+++.++.
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence                                           589999986552   2233456677777777666 56778877763

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.15  E-value=3.8e-11  Score=110.26  Aligned_cols=58  Identities=21%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ..+++++++..      ...+++++++.   |++++|+||||||||||+++|+ |+++|.+|+|.+++
T Consensus        38 ~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~-Gl~~p~~G~I~i~g   98 (282)
T cd03291          38 NNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL-GELEPSEGKIKHSG   98 (282)
T ss_pred             CeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECC
Confidence            34566666542      13466666665   9999999999999999999999 99999999998753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.14  E-value=3e-11  Score=121.52  Aligned_cols=53  Identities=19%  Similarity=0.220  Sum_probs=41.8

Q ss_pred             CCCeeeeecce-eccccCC--ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138        182 DNGLTGQYLLR-KRVESQD--FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR  235 (320)
Q Consensus       182 ~~~~~~~~~~~-~~l~~~~--~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~  235 (320)
                      ....+..|+.. ..|.+++  ..|++++|+||||||||||+|+|+ |+++|++|++.
T Consensus        76 ~~~~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~-G~l~p~~G~i~  131 (590)
T PRK13409         76 EEEPVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILS-GELIPNLGDYE  131 (590)
T ss_pred             ccCceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHh-CCccCCCcccc
Confidence            44466666532 2444443  239999999999999999999999 99999999997

>PLN03130 ABC transporter C family member; Provisional

Probab=99.14  E-value=4.1e-11  Score=132.43  Aligned_cols=93  Identities=16%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|...  ...+++++++.   |+++||+|+||||||||+++|. |+++|++|+|.+++.+.   .....+.
T Consensus      1237 ~I~f~nVsf~Y~~~--~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~-rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130       1237 SIKFEDVVLRYRPE--LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALF-RIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred             cEEEEEEEEEeCCC--CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CcCCCCCceEEECCEecccCCHHHHHh
Confidence            35667666666322  23477887776   9999999999999999999999 99999999999986542   2223345


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .+..+|+...
T Consensus      1314 ~IsiVpQdp~LF~GTIreNLd~~ 1336 (1622)
T PLN03130       1314 VLGIIPQAPVLFSGTVRFNLDPF 1336 (1622)
T ss_pred             ccEEECCCCccccccHHHHhCcC
Confidence            677777777666 4566666553

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.14  E-value=7.4e-11  Score=100.92  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=43.0

Q ss_pred             CeeeeecceeccccC-Cc-cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        184 GLTGQYLLRKRVESQ-DF-LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~-~~-~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ++...|+...++.+. .+ .|++++|+||||||||||+++|+ |+++|++|+|.+++
T Consensus         5 ~l~~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g   60 (177)
T cd03222           5 DCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILA-GQLIPNGDNDEWDG   60 (177)
T ss_pred             CeEEEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCCcEEEECC
Confidence            344555555555543 22 29999999999999999999999 99999999999864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.14  E-value=8.8e-11  Score=114.02  Aligned_cols=87  Identities=24%  Similarity=0.325  Sum_probs=72.3

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCC--CCchhHHHHHHHHHHcCC-CcEEEEeCCCCCC--hhHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANA--GIVGMTKEHLGLALALSV-PVFVVVTKIDMCP--PNVL   84 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~--g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~--~~~l   84 (320)
                      ....+.|+|+|||++|.  |+.++..+|.+++  |+++++  |+.+++++|+.+++.+++ |+++++||+|+..  .+.+
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~il--VvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVL--VVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEE--EEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHH
Confidence            34568999999999998  8899999999999  999999  999999999999999999 5788999999964  4556


Q ss_pred             HHHHHHHHHhhcCCCc
Q psy15138         85 QDTLKLLVRILKSPGC  100 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~  100 (320)
                      +...+++...+...++
T Consensus       160 ~~~~~~i~~~l~~~g~  175 (425)
T PRK12317        160 EEVKEEVSKLLKMVGY  175 (425)
T ss_pred             HHHHHHHHHHHHhhCC
Confidence            6666777766554333

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.14  E-value=1.2e-10  Score=112.54  Aligned_cols=111  Identities=21%  Similarity=0.217  Sum_probs=83.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ..+.|+|+|||++|.  ++.++.++|.+++  |+++++|. .+++++|+..++.+++ |+++++||+|+.+.++.....+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~ll--VVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAIL--VIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHH
Confidence            468999999999999  9999999999999  99999998 8999999999999999 5788899999988766665566


Q ss_pred             HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ++...+........+. +..+..+.+..+++...+...
T Consensus       163 ~i~~~l~~~~~~~~~i-i~vSA~~g~gI~~L~~~L~~~  199 (411)
T PRK04000        163 QIKEFVKGTVAENAPI-IPVSALHKVNIDALIEAIEEE  199 (411)
T ss_pred             HHHHHhccccCCCCeE-EEEECCCCcCHHHHHHHHHHh
Confidence            6666554321111111 113335555666666665543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.13  E-value=6.2e-11  Score=100.83  Aligned_cols=47  Identities=28%  Similarity=0.290  Sum_probs=41.4

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .++++++|.   |++++|+||||||||||+++|+ |+++|.+|++.+++..
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~-G~~~~~~G~i~~~g~~   65 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYDPTSGEILIDGVD   65 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCCEEEECCEE
Confidence            466666665   9999999999999999999999 9999999999987643

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.12  E-value=6.9e-11  Score=100.71  Aligned_cols=46  Identities=26%  Similarity=0.338  Sum_probs=40.2

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .++++++.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus        17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~   65 (173)
T cd03246          17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL-GLLRPTSGRVRLDGAD   65 (173)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCeEEECCEE
Confidence            55655554   9999999999999999999999 9999999999987543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.12  E-value=9.1e-11  Score=113.93  Aligned_cols=86  Identities=23%  Similarity=0.297  Sum_probs=72.5

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC---CchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG---IVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVL   84 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g---~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~l   84 (320)
                      +..+.|+|+|||++|.  |+.+...+|.+++  |+++++|   ..+++++|+.+++.+++ |.+|++||+|+.  +.+.+
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~il--VvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVL--VVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEE--EEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHH
Confidence            4568899999999998  8889999999999  9999999   88999999999999998 577889999997  45666


Q ss_pred             HHHHHHHHHhhcCCCc
Q psy15138         85 QDTLKLLVRILKSPGC  100 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~  100 (320)
                      +...+++...++..++
T Consensus       162 ~~~~~ei~~~~~~~g~  177 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGY  177 (426)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            6677777777654443

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0056|consensus

Probab=99.12  E-value=1.4e-10  Score=110.41  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=64.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      -+++.++++.|..+   ++++++++|.   |+.+|+|||||+||||++|+|- ++.+..+|.|++++.+..   ....+.
T Consensus       537 ~i~fsnvtF~Y~p~---k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv~sGsI~iDgqdIrnvt~~SLRs  612 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPG---KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDVNSGSITIDGQDIRNVTQSSLRS  612 (790)
T ss_pred             eEEEEEeEEecCCC---CceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhccCceEEEcCchHHHHHHHHHHH
Confidence            34667777777654   4455666664   9999999999999999999999 999999999999876521   112223


Q ss_pred             cceeeeccccCC-ccccceeecCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEH  272 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~  272 (320)
                      .++-++|+-..| ++...++.++..
T Consensus       613 ~IGVVPQDtvLFNdTI~yNIryak~  637 (790)
T KOG0056|consen  613 SIGVVPQDTVLFNDTILYNIRYAKP  637 (790)
T ss_pred             hcCcccCcceeecceeeeheeecCC
Confidence            333444444443 566666666544

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.12  E-value=9.4e-11  Score=101.82  Aligned_cols=64  Identities=23%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             eeeeecCCCeeeee--cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138        176 LRQRKLDNGLTGQY--LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR  240 (320)
Q Consensus       176 ~~~~~~~~~~~~~~--~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~  240 (320)
                      ++++++++.|....  ....+++++++.   |++++|+||||||||||+++|+ |++  +|.+|+|.+++.+
T Consensus         4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~-Gl~~~~~~~G~i~~~g~~   74 (194)
T cd03213           4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALA-GRRTGLGVSGEVLINGRP   74 (194)
T ss_pred             EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCceEEEECCEe
Confidence            45555555543210  013467777665   9999999999999999999999 999  9999999987654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.12  E-value=6.6e-11  Score=130.55  Aligned_cols=90  Identities=17%  Similarity=0.088  Sum_probs=67.1

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|..+  ...+++++++.   |+++||+|+||||||||+++|. |+++|++|+|.+++.+.   .....+..
T Consensus      1285 I~f~nVsf~Y~~~--~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~-rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957      1285 VEFRNYCLRYRED--LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLF-RINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred             EEEEEEEEEeCCC--CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCccCCCCeEEECCEEccccCHHHHHhc
Confidence            5666666555432  13578888876   9999999999999999999999 99999999999986552   22233566


Q ss_pred             ceeeeccccCC-ccccceee
Q psy15138        250 TSSVGNDILGF-DSVGNVVN  268 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~  268 (320)
                      ++.++|+...| .+..+|+.
T Consensus      1362 i~iVpQdp~LF~gTIr~NLd 1381 (1522)
T TIGR00957      1362 ITIIPQDPVLFSGSLRMNLD 1381 (1522)
T ss_pred             CeEECCCCcccCccHHHHcC
Confidence            77777777666 45666665

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.11  E-value=7.8e-11  Score=129.92  Aligned_cols=92  Identities=21%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|..+  ...++++++|.   |+++||+|+||||||||+++|. |+++|.+|+|.+++.+.   .....+.
T Consensus      1308 ~I~f~nVsf~Y~~~--~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLl-rl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243       1308 SLVFEGVQMRYREG--LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFM-RMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred             eEEEEEEEEEeCCC--CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEcccCCHHHHHh
Confidence            36677776666432  13467777776   9999999999999999999999 99999999999986552   2223356


Q ss_pred             cceeeeccccCC-ccccceeec
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNK  269 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~  269 (320)
                      .++.++|+...| .+..+|+..
T Consensus      1385 ~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243       1385 QFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred             cceEECCCCccccccHHHHhCc
Confidence            677788887766 456666653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.11  E-value=8.7e-11  Score=101.82  Aligned_cols=65  Identities=23%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~  240 (320)
                      .++++++.+.|........+++++++.   |++++|+||||||||||+++|+ |+.  +|++|++.+++.+
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~~~G~i~~~g~~   72 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA-GRKTAGVITGEILINGRP   72 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCcCCCcceEEEECCEe
Confidence            345555554443210113466777765   9999999999999999999999 986  4899999987544

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.10  E-value=3.3e-11  Score=123.00  Aligned_cols=122  Identities=13%  Similarity=0.114  Sum_probs=71.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS  252 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~  252 (320)
                      ++++++++.|.   ....+++++++.   |++++|+||||||||||+++|+ |+++|++|++....        ...++.
T Consensus       452 i~~~nv~~~~~---~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~-Gl~~~~~G~i~~~~--------~~~i~~  519 (659)
T TIGR00954       452 IKFENIPLVTP---NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILG-ELWPVYGGRLTKPA--------KGKLFY  519 (659)
T ss_pred             EEEEeeEEECC---CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEeecC--------CCcEEE
Confidence            45555554432   123567777765   9999999999999999999999 99999999987642        123344


Q ss_pred             eeccccCC-ccccceeecCCCC-CCCHHhHHHHHHHHHHHhcccCCccccccc---------cccccCCC
Q psy15138        253 VGNDILGF-DSVGNVVNKPEHG-SLDWVKICERSAKVITFIDLAGHERYLKTT---------VFGMTGHV  311 (320)
Q Consensus       253 ~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~---------~~~LSG~~  311 (320)
                      ++|+...+ .+..+++..+... .......  ..+++.+.++.+++.++.+++         ...|||++
T Consensus       520 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~--~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGq  587 (659)
T TIGR00954       520 VPQRPYMTLGTLRDQIIYPDSSEDMKRRGL--SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGE  587 (659)
T ss_pred             ECCCCCCCCcCHHHHHhcCCChhhhhccCC--CHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHH
Confidence            44444332 2455555443211 0000000  112333445555555554442         36899964

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.09  E-value=1e-10  Score=100.11  Aligned_cols=47  Identities=28%  Similarity=0.425  Sum_probs=40.8

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .+++++++.   |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~   65 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLT-GDLKPQQGEITLDGVP   65 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCEEEECCEE
Confidence            356666654   9999999999999999999999 9999999999987643

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.09  E-value=9.4e-11  Score=97.00  Aligned_cols=45  Identities=31%  Similarity=0.417  Sum_probs=39.8

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ..+++++|.   |++++|+||||||||||+++|+ |+++|.+|+|.+++
T Consensus        14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~~   61 (144)
T cd03221          14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIA-GELEPDEGIVTWGS   61 (144)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCceEEEECC
Confidence            456666664   9999999999999999999999 99999999998864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.09  E-value=1.3e-10  Score=98.47  Aligned_cols=45  Identities=24%  Similarity=0.308  Sum_probs=40.0

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ..++++++.   |++++|+||||||||||+++|+ |+++|++|++.+..
T Consensus        15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~~   62 (166)
T cd03223          15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA-GLWPWGSGRIGMPE   62 (166)
T ss_pred             eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECC
Confidence            456666665   9999999999999999999999 99999999998854

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.09  E-value=1.9e-10  Score=100.28  Aligned_cols=49  Identities=20%  Similarity=0.180  Sum_probs=42.2

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeecccc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFR  240 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~  240 (320)
                      ...++++++|.   |++++|+||||||||||+++|+ |+  ++|++|++.+++.+
T Consensus        12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~p~~G~i~~~g~~   65 (200)
T cd03217          12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM-GHPKYEVTEGEILFKGED   65 (200)
T ss_pred             CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHh-CCCcCCCCccEEEECCEE
Confidence            34567777775   9999999999999999999999 99  57999999987643

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.09  E-value=1.5e-10  Score=102.62  Aligned_cols=65  Identities=23%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      +..+.|+|+|||++|.  +..+...+|.+++  |+++.+|++++|++++..+...++|+++++||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~il--VvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALV--VVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            3457889999999999  7888899999999  999999999999999999999999999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.08  E-value=1.7e-10  Score=102.08  Aligned_cols=85  Identities=28%  Similarity=0.262  Sum_probs=69.3

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCC-------CCchhHHHHHHHHHHcCC-CcEEEEeCCCCCC-
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANA-------GIVGMTKEHLGLALALSV-PVFVVVTKIDMCP-   80 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~-------g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~-   80 (320)
                      ....+.|+|+|||.+|.  ++.++..+|.+++  ||++.+       ++.+++++|+.++..+++ |+++++||+|+.. 
T Consensus        75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~--VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~  152 (219)
T cd01883          75 EKYRFTILDAPGHRDFVPNMITGASQADVAVL--VVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV  152 (219)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHhhhCCEEEE--EEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence            34568999999999999  7888889999988  999998       567899999999999998 6777999999973 


Q ss_pred             ---hhHHHHHHHHHHHhhcCC
Q psy15138         81 ---PNVLQDTLKLLVRILKSP   98 (320)
Q Consensus        81 ---~~~le~~l~~~~~~l~~~   98 (320)
                         ...++...+++...+...
T Consensus       153 ~~~~~~~~~i~~~l~~~l~~~  173 (219)
T cd01883         153 NWSEERYDEIKKELSPFLKKV  173 (219)
T ss_pred             cccHHHHHHHHHHHHHHHHHc
Confidence               456677777776655543

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.07  E-value=4.3e-11  Score=131.09  Aligned_cols=93  Identities=18%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec-cccc---hhhhhcC
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK-LFRH---KHEMESG  248 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~-~~~~---~~~~~~g  248 (320)
                      ++++++++.|... ....+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.++ +.+.   .....+.
T Consensus       383 I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~-gl~~p~~G~I~i~~g~~i~~~~~~~lr~  460 (1466)
T PTZ00265        383 IQFKNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE-RLYDPTEGDIIINDSHNLKDINLKWWRS  460 (1466)
T ss_pred             EEEEEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH-HhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence            5566666555321 113477777775   9999999999999999999999 9999999999994 2221   1111223


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .+..+++..+
T Consensus       461 ~Ig~V~Q~~~LF~~TI~eNI~~g  483 (1466)
T PTZ00265        461 KIGVVSQDPLLFSNSIKNNIKYS  483 (1466)
T ss_pred             hccEecccccchhccHHHHHHhc
Confidence            445555554444 3555666543

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.07  E-value=7e-11  Score=109.90  Aligned_cols=85  Identities=24%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMES  247 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~  247 (320)
                      .-++++++.+.|...   .-.+.+++++   ||.+-|+|.||||||||+++|+ |+++|++|+|++++..   ...+..+
T Consensus       321 ~~lelrnvrfay~~~---~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLt-GL~~PqsG~I~ldg~pV~~e~ledYR  396 (546)
T COG4615         321 KTLELRNVRFAYQDN---AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLT-GLYQPQSGEILLDGKPVSAEQLEDYR  396 (546)
T ss_pred             cceeeeeeeeccCcc---cceecceeeEEecCcEEEEECCCCCcHHHHHHHHh-cccCCCCCceeECCccCCCCCHHHHH
Confidence            345666666555332   1234444443   9999999999999999999999 9999999999999654   3334456


Q ss_pred             CcceeeeccccCCcc
Q psy15138        248 GRTSSVGNDILGFDS  262 (320)
Q Consensus       248 g~v~~~~~~~~~~~~  262 (320)
                      +.++.+|.++..|+.
T Consensus       397 ~LfSavFsDyhLF~~  411 (546)
T COG4615         397 KLFSAVFSDYHLFDQ  411 (546)
T ss_pred             HHHHHHhhhHhhhHh
Confidence            777888888877754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.06  E-value=9e-11  Score=100.31  Aligned_cols=41  Identities=29%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      ..++++++|+   |++++|+|||||||||||++|. +    .+|++++.
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-~----~~G~v~~~   51 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-Y----ASGKARLI   51 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-h----cCCcEEEC
Confidence            4556777775   9999999999999999999997 4    58888765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0061|consensus

Probab=99.06  E-value=1.1e-10  Score=117.70  Aligned_cols=122  Identities=19%  Similarity=0.137  Sum_probs=77.3

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC---CCceeeeccccchhhhhcCcceeeecccc--CCcc
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN---GRGHARQKLFRHKHEMESGRTSSVGNDIL--GFDS  262 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~---~~G~i~~~~~~~~~~~~~g~v~~~~~~~~--~~~~  262 (320)
                      .++.+++++..   |+..||+|||||||||||++|+ |..+.   .+|+|.+++.....+......+.+.|+-.  +..+
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~La-gr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT  120 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALA-GRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT  120 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHh-ccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence            35566666554   9999999999999999999999 98875   57999999744332222333344444433  2345


Q ss_pred             ccceeecCCCCCCCHH-hHHHHHHHHHHHhcccCCccccccccc-----cccCCCCC
Q psy15138        263 VGNVVNKPEHGSLDWV-KICERSAKVITFIDLAGHERYLKTTVF-----GMTGHVPD  313 (320)
Q Consensus       263 ~~~~v~~~~~~~~~~~-~~~~~~~~~l~~l~l~gl~~~~~~~~~-----~LSG~~~~  313 (320)
                      +.+.+.+.....++.. ...++.+++.+.++..|+.+..++.+.     ++||++.-
T Consensus       121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErk  177 (613)
T KOG0061|consen  121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERK  177 (613)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhh
Confidence            5555554433222221 223344455555556666777778775     79998754

>PLN03140 ABC transporter G family member; Provisional

Probab=99.04  E-value=1.2e-10  Score=127.28  Aligned_cols=117  Identities=17%  Similarity=0.141  Sum_probs=72.3

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeeccccchhhhhcCcceeeeccccCC--cccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVG  264 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~  264 (320)
                      +.+++++++.   |+.++|+|||||||||||++|+ |..++  .+|++.+++.+.........++.++|+...+  .++.
T Consensus       893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~La-G~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~  971 (1470)
T PLN03140        893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR  971 (1470)
T ss_pred             ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHc-CCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence            4577777775   9999999999999999999999 98764  5799998765422111122234444443222  3455


Q ss_pred             ceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCcccccccc-----ccccCCCC
Q psy15138        265 NVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTV-----FGMTGHVP  312 (320)
Q Consensus       265 ~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~-----~~LSG~~~  312 (320)
                      +++......    .....+   +.+.+.++++.+|+.+..++.+     .+|||++.
T Consensus       972 E~L~~~a~lr~~~~~~~~~---~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140        972 ESLIYSAFLRLPKEVSKEE---KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred             HHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence            555432211    112222   2234455556666677777765     68999653

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.03  E-value=1.2e-09  Score=99.68  Aligned_cols=80  Identities=18%  Similarity=0.114  Sum_probs=66.5

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||.+|.  +..+...+|.+++  ||++.+|+.+++++++..++..++|.++++||+|+.... .+..++++
T Consensus        64 ~~i~liDTPG~~df~~~~~~~l~~aD~ail--VVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~~~~~~~l  140 (270)
T cd01886          64 HRINIIDTPGHVDFTIEVERSLRVLDGAVA--VFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-FFRVVEQI  140 (270)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHcCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHH
Confidence            457889999999999  6777888899988  999999999999999999999999999999999997432 34455555


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      +..+.
T Consensus       141 ~~~l~  145 (270)
T cd01886         141 REKLG  145 (270)
T ss_pred             HHHhC
Confidence            55554

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04171 SelB SelB subfamily

Probab=99.02  E-value=1.4e-09  Score=90.62  Aligned_cols=108  Identities=24%  Similarity=0.242  Sum_probs=77.3

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ...+.++|+|||++|.  +.....++|.+++  |+++++++.+++++++.+++..+. |+++++||+|+....+.+...+
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~--V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~  127 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL--VVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEE  127 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEE--EEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHH
Confidence            3468899999999998  6666788999888  999999999999999988888888 8889999999987665555555


Q ss_pred             HHHHhhcCCCccccCccccc-cCCchhHHHHHHHHH
Q psy15138         90 LLVRILKSPGCRKVPVMNCL-ISPTEEQFDLLQKKI  124 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~kl~~-~~gnyd~~~~l~~q~  124 (320)
                      ++.+.+........+  +.. ...+.++++++...+
T Consensus       128 ~~~~~~~~~~~~~~~--~~~~Sa~~~~~v~~l~~~l  161 (164)
T cd04171         128 EIRELLAGTFLADAP--IFPVSAVTGEGIEELKEYL  161 (164)
T ss_pred             HHHHHHHhcCcCCCc--EEEEeCCCCcCHHHHHHHH
Confidence            665554432111221  222 234445566555443

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.02  E-value=8.3e-11  Score=104.46  Aligned_cols=116  Identities=73%  Similarity=1.128  Sum_probs=90.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCC-CHHhHHH
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSL-DWVKICE  282 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~  282 (320)
                      +++++|++|+|||||++.+.++..+++.|..+....++.|+...|.++......++|+..+..+++...... ...+..+
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            478999999999999999987888999999998888889999999998888888888776655554322111 0011112


Q ss_pred             HHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        283 RSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       283 ~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      ...+.+.++|..|+.++.+....+++++.+|++++||
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVv  117 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVV  117 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEE
Confidence            2345667899999999999999999998999999886

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.02  E-value=2.3e-10  Score=114.85  Aligned_cols=80  Identities=21%  Similarity=0.185  Sum_probs=68.1

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +..+...+|.+++  ||++.+|+++||++|+..+...++|.++++||+|+... +.++.++++
T Consensus        64 ~kinlIDTPGh~DF~~ev~~~l~~aD~alL--VVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a-~~~~v~~ei  140 (594)
T TIGR01394        64 TKINIVDTPGHADFGGEVERVLGMVDGVLL--LVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSA-RPDEVVDEV  140 (594)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHhCCEEEE--EEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCc-CHHHHHHHH
Confidence            468899999999998  6777888999999  99999999999999999999999999999999998642 345555666


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...+.
T Consensus       141 ~~l~~  145 (594)
T TIGR01394       141 FDLFA  145 (594)
T ss_pred             HHHHH
Confidence            66554

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.01  E-value=5.1e-10  Score=112.19  Aligned_cols=64  Identities=30%  Similarity=0.328  Sum_probs=59.8

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.|+|+|||++|.  +..++..+|.+++  |+++++|+++||++|+..++..++|.++++||+|+..
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaIL--VVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVL--VVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE  201 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEE--EEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence            79999999999998  6668999999999  9999999999999999999999999999999999953

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0466|consensus

Probab=99.01  E-value=3.9e-10  Score=101.52  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCC-CCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHHHH
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANA-GIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~-g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ++|+|+|||.=+.  |+.|++-+|.++|  .+++|+ -++|||-|||+-...+.+. ++++-||+||..++.-.+.-+++
T Consensus       127 VSfVDCPGHDiLMaTMLnGaAvmDaalL--lIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I  204 (466)
T KOG0466|consen  127 VSFVDCPGHDILMATMLNGAAVMDAALL--LIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQI  204 (466)
T ss_pred             EEeccCCchHHHHHHHhcchHHhhhhhh--hhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHH
Confidence            8999999999888  9999999999999  999997 5689999999999999995 55555999999887766667888


Q ss_pred             HHhhcCCCccccCc
Q psy15138         92 VRILKSPGCRKVPV  105 (320)
Q Consensus        92 ~~~l~~~~~~~i~~  105 (320)
                      .+++...+....|.
T Consensus       205 ~kFi~~t~ae~aPi  218 (466)
T KOG0466|consen  205 QKFIQGTVAEGAPI  218 (466)
T ss_pred             HHHHhccccCCCce
Confidence            88888766655443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.00  E-value=3.4e-10  Score=123.79  Aligned_cols=120  Identities=16%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC----CCCCceeeeccccchh--hhhcCcceeeeccccCC--
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL----DNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--  260 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l----~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--  260 (320)
                      +.+++++++.   |+.++|+||||||||||||+|+ |..    .|.+|+|.+++.+...  ...++.++.++|+...+  
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~La-G~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIA-SNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh-CCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence            4566776665   9999999999999999999999 986    4689999998654211  11223345555543322  


Q ss_pred             ccccceeecCCCC--------CCCHHhHHHHHHHHHHHhcccCCcccccc-----ccccccCCCCCE
Q psy15138        261 DSVGNVVNKPEHG--------SLDWVKICERSAKVITFIDLAGHERYLKT-----TVFGMTGHVPDF  314 (320)
Q Consensus       261 ~~~~~~v~~~~~~--------~~~~~~~~~~~~~~l~~l~l~gl~~~~~~-----~~~~LSG~~~~~  314 (320)
                      .++.+++..+...        .....+..++.  ...+++.+|+.+..++     .+.+|||++.-.
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR  217 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHI--ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR  217 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH--HHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence            3555555443211        11222211111  1234555566665554     468999987543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.00  E-value=4.6e-10  Score=115.31  Aligned_cols=66  Identities=29%  Similarity=0.311  Sum_probs=60.5

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ...+.|+|+|||++|.  +..++..+|.++|  |+++++|++++|++|+..++..++|++|++||+|+..
T Consensus       336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL--VVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVL--VVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG  403 (787)
T ss_pred             CEEEEEEECCCCccchhHHHhhhhhCCEEEE--EEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence            3568999999999999  5667888999999  9999999999999999999999999999999999964

>PLN03140 ABC transporter G family member; Provisional

Probab=98.99  E-value=4.5e-10  Score=122.86  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=52.8

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---CceeeeccccchhhhhcCcceeeeccccCC--ccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHKHEMESGRTSSVGNDILGF--DSV  263 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~  263 (320)
                      +.+++++++.   |+.++|+||||||||||||+|+ |.++|+   +|+|.+++.+.......+.++.++|+...+  .++
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~La-G~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV  256 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALA-GKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV  256 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHh-CCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence            4466776664   9999999999999999999999 999998   999999865422111123344444443222  345


Q ss_pred             cceeec
Q psy15138        264 GNVVNK  269 (320)
Q Consensus       264 ~~~v~~  269 (320)
                      .+.+.+
T Consensus       257 ~EtL~f  262 (1470)
T PLN03140        257 KETLDF  262 (1470)
T ss_pred             HHHHHH
Confidence            555543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.98  E-value=4.7e-10  Score=123.57  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=76.4

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...  ...++++++|.   |+++||+|+||||||||+++|. |+++ .+|+|.+++.+.   .....+..
T Consensus      1218 I~f~nVs~~Y~~~--~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~-rl~~-~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271      1218 MDVQGLTAKYTEA--GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLS-TEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred             EEEEEEEEEeCCC--CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh-hhcC-CCcEEEECCEEcccCCHHHHHhc
Confidence            4555555555321  24577887776   9999999999999999999999 9997 799999986552   22334567


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccc
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTV  304 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~  304 (320)
                      ++.++|+...| .+..+|+....  ...       .+++.+.++.+++.++..+.|
T Consensus      1294 is~IpQdp~LF~GTIR~NLdp~~--~~t-------deei~~aL~~~~L~~~i~~lp 1340 (1490)
T TIGR01271      1294 FGVIPQKVFIFSGTFRKNLDPYE--QWS-------DEEIWKVAEEVGLKSVIEQFP 1340 (1490)
T ss_pred             eEEEeCCCccCccCHHHHhCccc--CCC-------HHHHHHHHHHCCCHHHHHhCc
Confidence            78888887766 45666664321  111       233445555555555444444

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03073 ABC transporter F family; Provisional

Probab=98.97  E-value=5.3e-10  Score=114.72  Aligned_cols=57  Identities=12%  Similarity=0.048  Sum_probs=43.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC---CCCCceeee
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL---DNGRGHARQ  236 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l---~~~~G~i~~  236 (320)
                      .+++++++    ..|+....+++++|.   |++++|+|||||||||||++|+ |..   .|.+|+|..
T Consensus       177 ~I~i~nls----~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~-g~~~~g~p~~g~I~~  239 (718)
T PLN03073        177 DIHMENFS----ISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA-MHAIDGIPKNCQILH  239 (718)
T ss_pred             eEEEceEE----EEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCCCCCEEEE
Confidence            44555443    444445578888776   9999999999999999999999 864   577888864

>KOG0059|consensus

Probab=98.96  E-value=4.7e-10  Score=117.88  Aligned_cols=116  Identities=19%  Similarity=0.146  Sum_probs=79.3

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhhhcCcceeeeccccCCccc
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEMESGRTSSVGNDILGFDSV  263 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~~~~  263 (320)
                      +++..++.   ||+.+++|||||||||++++|+ |..+|++|++.+.+.+..       ....+|+-+|.-.-...++..
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mlt-G~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r  658 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT-GETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR  658 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHh-CCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence            66666654   9999999999999999999999 999999999999755421       112245555542222223333


Q ss_pred             cceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        264 GNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       264 ~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      +....++...++++.++.+.++   ..++.+|+.++.++....+||+...
T Consensus       659 EhL~~~arlrG~~~~di~~~v~---~ll~~~~L~~~~~~~~~~ySgG~kR  705 (885)
T KOG0059|consen  659 EHLEFYARLRGLPRSDIGSAIE---KLLRLVGLGPYANKQVRTYSGGNKR  705 (885)
T ss_pred             HHHHHHHHHcCCChhHHHHHHH---HHHHHcCChhhhccchhhCCCcchh
Confidence            4444455556666666655544   4555666688889999999997654

>cd01858 NGP_1 NGP-1

Probab=98.96  E-value=3.6e-09  Score=88.60  Aligned_cols=58  Identities=17%  Similarity=0.122  Sum_probs=37.6

Q ss_pred             CCccchhhhccceecCCCCchhHHHHHHHHHH--cCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138         33 ASPADHSMLQSKVGANAGIVGMTKEHLGLALA--LSVPVFVVVTKIDMCPPNVLQDTLKLLV   92 (320)
Q Consensus        33 ~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~--l~i~~~v~lnk~Dl~~~~~le~~l~~~~   92 (320)
                      ...+|.+++  |+++..+..+..++-....+.  .+.|+++|+||+|+.+.+.++.++..+.
T Consensus         6 l~~aD~il~--VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~   65 (157)
T cd01858           6 IDSSDVVIQ--VLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS   65 (157)
T ss_pred             hhhCCEEEE--EEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh
Confidence            456787777  999998765543322233333  2379999999999987665544444443

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.95  E-value=6.4e-10  Score=113.25  Aligned_cols=58  Identities=26%  Similarity=0.312  Sum_probs=47.2

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      ++++.++++.    |+...++++++|.   |++++|+|||||||||||++|+ |+++|++|+|.+.
T Consensus         3 ~l~i~~ls~~----~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriia-G~~~p~~G~I~~~   63 (635)
T PRK11147          3 LISIHGAWLS----FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN-GEVLLDDGRIIYE   63 (635)
T ss_pred             EEEEeeEEEE----eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCeEEEeC
Confidence            3555555443    4445677777775   9999999999999999999999 9999999999875

>KOG0461|consensus

Probab=98.95  E-value=2e-09  Score=98.49  Aligned_cols=112  Identities=21%  Similarity=0.240  Sum_probs=87.6

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh----hHHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP----NVLQDTL   88 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~----~~le~~l   88 (320)
                      .+++||+|||.-++  -+.|+.-+|..++  ||++..|+..||-|||.|+..+--..+|++||+|..++    ..+++..
T Consensus        71 q~tlvDCPGHasLIRtiiggaqiiDlm~l--viDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~  148 (522)
T KOG0461|consen   71 QFTLVDCPGHASLIRTIIGGAQIIDLMIL--VIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSA  148 (522)
T ss_pred             eeEEEeCCCcHHHHHHHHhhhheeeeeeE--EEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHH
Confidence            36899999999999  7888999999999  99999999999999999999887789999999998765    5677777


Q ss_pred             HHHHHhhcCCCccc-cCccccccCCch---hHHHHHHHHHHHHH
Q psy15138         89 KLLVRILKSPGCRK-VPVMNCLISPTE---EQFDLLQKKIKSLI  128 (320)
Q Consensus        89 ~~~~~~l~~~~~~~-i~~kl~~~~gny---d~~~~l~~q~~~~~  128 (320)
                      ..++++|.+..+.. .|.-.......|   +.+.+|++.+..+.
T Consensus       149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            88888888766653 343322222223   33666777766653

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.94  E-value=1.1e-09  Score=114.54  Aligned_cols=78  Identities=17%  Similarity=0.161  Sum_probs=69.6

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC------h---
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP------P---   81 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~------~---   81 (320)
                      +..+.+||+|||.+|.  +..+...+|.+++  ||+|.+|+..||++++..|...++|.++++||+|...      .   
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ail--Vvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~  174 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALV--VVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA  174 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEE--EEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHH
Confidence            3458999999999999  8999999999999  9999999999999999999999999999999999872      2   


Q ss_pred             -hHHHHHHHHHH
Q psy15138         82 -NVLQDTLKLLV   92 (320)
Q Consensus        82 -~~le~~l~~~~   92 (320)
                       ..++..+++++
T Consensus       175 ~~~~~~vi~~in  186 (843)
T PLN00116        175 YQTFSRVIENAN  186 (843)
T ss_pred             HHHHHHHHHHHH
Confidence             46677777776

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.94  E-value=1.6e-09  Score=95.02  Aligned_cols=82  Identities=24%  Similarity=0.312  Sum_probs=66.1

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC--hhHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP--PNVLQDT   87 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~~~le~~   87 (320)
                      +..+.++|+|||++|.  ++.+...+|.+++  |+++.+|+..+++++..+++..++| +++++||+|+..  .+.++..
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~ll--VvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i  153 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAIL--LVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEI  153 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEE--EEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHH
Confidence            4468899999999997  7777889999988  9999999999999999999999986 566899999964  3445555


Q ss_pred             HHHHHHhhc
Q psy15138         88 LKLLVRILK   96 (320)
Q Consensus        88 l~~~~~~l~   96 (320)
                      ..++...+.
T Consensus       154 ~~~~~~~~~  162 (208)
T cd04166         154 VADYLAFAA  162 (208)
T ss_pred             HHHHHHHHH
Confidence            555555443

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.93  E-value=8.4e-10  Score=121.93  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=72.9

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS  252 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~  252 (320)
                      ++++++++.|...  ....++++++.   |++++|+||||||||||+++|+ |+++|.+|++.+++          .++.
T Consensus       637 i~~~~~~~~~~~~--~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~-g~~~~~~G~i~~~g----------~i~y  703 (1522)
T TIGR00957       637 ITVHNATFTWARD--LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL-AEMDKVEGHVHMKG----------SVAY  703 (1522)
T ss_pred             EEEEEeEEEcCCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCccCCcEEEECC----------EEEE
Confidence            4455544444211  12466777765   9999999999999999999999 99999999998753          3445


Q ss_pred             eeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCCC
Q psy15138        253 VGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       253 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ++|+.+.+ .+..+++..+..  .......+.  ...+.+.++..  |...........|||++.
T Consensus       704 v~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQk  766 (1522)
T TIGR00957       704 VPQQAWIQNDSLRENILFGKA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQK  766 (1522)
T ss_pred             EcCCccccCCcHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHH
Confidence            55554433 456666665432  111111111  11111222222  222345667788999754

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd01889 SelB_euk SelB subfamily

Probab=98.91  E-value=3.6e-09  Score=91.48  Aligned_cols=112  Identities=21%  Similarity=0.207  Sum_probs=79.7

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      ...+.++|+|||.+|.  +..++..+|.+++  |+++.+|...++.+++.++...++|+++++||+|+...++.+..+++
T Consensus        67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~--VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~  144 (192)
T cd01889          67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLL--VVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEK  144 (192)
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHH
Confidence            4568999999999988  5566778899888  99999999999999998888889999999999999876666555555


Q ss_pred             HHHhhc----CCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         91 LVRILK----SPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        91 ~~~~l~----~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      +.+.+.    ......++. +..+..+.+.+++++..+..+
T Consensus       145 ~~~~l~~~~~~~~~~~~~v-i~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         145 MKKKLQKTLEKTRFKNSPI-IPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             HHHHHHHHHHhcCcCCCCE-EEEeccCCCCHHHHHHHHHhc
Confidence            554322    111222221 113346666677666655443

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.90  E-value=1.6e-09  Score=90.67  Aligned_cols=46  Identities=28%  Similarity=0.294  Sum_probs=39.9

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .++++.++.   |++++|+||||||||||+++|+ |.++|.+|++.+++.
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~-g~~~~~~G~i~~~~~   61 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIA-GLLKPTSGEILIDGK   61 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCE
Confidence            455555554   9999999999999999999999 999999999998754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03130 ABC transporter C family member; Provisional

Probab=98.90  E-value=1.1e-09  Score=121.34  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=63.6

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC-ceeeeccccchhhhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR-GHARQKLFRHKHEMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~-G~i~~~~~~~~~~~~~g~v  250 (320)
                      .++++++++.|... .....++++++.   |+.++|+||||||||||+++|. |+++|.+ |+|.+          .+.+
T Consensus       614 ~I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl-G~~~~~~GG~I~l----------~~~I  681 (1622)
T PLN03130        614 AISIKNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML-GELPPRSDASVVI----------RGTV  681 (1622)
T ss_pred             ceEEEeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHH-HhhccCCCceEEE----------cCeE
Confidence            35666666665421 113456777765   9999999999999999999999 9999999 89875          3566


Q ss_pred             eeeeccccCC-ccccceeecCC
Q psy15138        251 SSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       251 ~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      +.++|+.+.| .+..+|+.++.
T Consensus       682 ayv~Q~p~LfngTIreNI~fg~  703 (1622)
T PLN03130        682 AYVPQVSWIFNATVRDNILFGS  703 (1622)
T ss_pred             EEEcCccccCCCCHHHHHhCCC
Confidence            7777777665 56777777653

>PTZ00243 ABC transporter; Provisional

Probab=98.89  E-value=1.1e-09  Score=120.91  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC-cccccee
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF-DSVGNVV  267 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~v  267 (320)
                      ..+++++++.   |+.++|+|||||||||||++|+ |+++|++|+|.+.          +.++.++|+...+ .+..+++
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~-G~~~~~~G~i~~~----------~~i~yv~Q~~~l~~~Tv~enI  741 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLL-SQFEISEGRVWAE----------RSIAYVPQQAWIMNATVRGNI  741 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEEC----------CeEEEEeCCCccCCCcHHHHH
Confidence            3456676665   9999999999999999999999 9999999999763          2334444443333 3555555


Q ss_pred             ecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCCC
Q psy15138        268 NKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       268 ~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+..  .......+.  ...+.+.++.+  |+....+.....|||++.
T Consensus       742 ~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQk  788 (1560)
T PTZ00243        742 LFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK  788 (1560)
T ss_pred             HcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHH
Confidence            54321  111111111  11222233333  555566778899999653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.89  E-value=9.1e-09  Score=99.93  Aligned_cols=66  Identities=20%  Similarity=0.122  Sum_probs=52.9

Q ss_pred             ceEEEeCCCcc--------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChh
Q psy15138         15 AASVFETRIHE--------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        15 ~~~~~d~pgh~--------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~   82 (320)
                      .+.++|+||+.        .+.  .......+|.+++  |+++.+|......+....++..+.|.++|+||+|+...+
T Consensus        48 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~--vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~  123 (429)
T TIGR03594        48 EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILF--VVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED  123 (429)
T ss_pred             EEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence            47789999983        333  2334567888877  999999999988888888888899999999999987543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.88  E-value=1.7e-09  Score=119.15  Aligned_cols=67  Identities=22%  Similarity=0.281  Sum_probs=51.6

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC-ccccceee
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF-DSVGNVVN  268 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~v~  268 (320)
                      .+++++++.   |+.++|+|||||||||||++|+ |+++|.+|+|.+++          .++.++|+.+.| .++.+++.
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~-G~~~~~~G~i~~~g----------~iayv~Q~~~l~~~Ti~eNI~  508 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM-GELEPSEGKIKHSG----------RISFSPQTSWIMPGTIKDNII  508 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECC----------EEEEEeCCCccCCccHHHHHH
Confidence            356777765   9999999999999999999999 99999999998753          345555554444 35666665


Q ss_pred             cC
Q psy15138        269 KP  270 (320)
Q Consensus       269 ~~  270 (320)
                      ++
T Consensus       509 ~g  510 (1490)
T TIGR01271       509 FG  510 (1490)
T ss_pred             hc
Confidence            54

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.88  E-value=1.3e-09  Score=111.05  Aligned_cols=65  Identities=26%  Similarity=0.325  Sum_probs=60.1

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ..+.|+|+|||++|.  +..++..+|.+++  ||++++|++++|++++..++..++|.++++||+|+..
T Consensus       295 ~kItfiDTPGhe~F~~mr~rg~~~aDiaIL--VVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~  361 (742)
T CHL00189        295 QKIVFLDTPGHEAFSSMRSRGANVTDIAIL--IIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN  361 (742)
T ss_pred             eEEEEEECCcHHHHHHHHHHHHHHCCEEEE--EEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence            568999999999999  5568899999988  9999999999999999999999999999999999965

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.86  E-value=1e-08  Score=99.88  Aligned_cols=65  Identities=22%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             CceEEEeCCCcch----hh------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHER----DD------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~----~~------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ..+.++|+||+++    +.      .......+|.+++  |+++.++......+....++..+.|+++++||+|+..
T Consensus        49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~--vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~  123 (435)
T PRK00093         49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILF--VVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD  123 (435)
T ss_pred             cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence            3478999999998    32      1223567888877  9999999888777777778888999999999999764

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.86  E-value=8.2e-09  Score=103.69  Aligned_cols=62  Identities=26%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      +.|+|+|||++|.  +..+...+|.+++  |+++++|++++|++++.+++..++|.++++||+|+.
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~Il--VvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~  136 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAIL--VVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI  136 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEE--EEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence            7899999999999  5667888999988  999999999999999999999999999999999985

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.86  E-value=4.4e-09  Score=99.63  Aligned_cols=79  Identities=25%  Similarity=0.237  Sum_probs=60.7

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC--ChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC--PPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~--~~~~le~~l~   89 (320)
                      ..|-|+|+|||.+|=  -=-.-+..|-++|  +|+|.+|+|||||==+.=|.++++++|||+||+|..  .++|.   ..
T Consensus        68 ~~INIvDTPGHADFGGEVERvl~MVDgvlL--lVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~V---vd  142 (603)
T COG1217          68 TRINIVDTPGHADFGGEVERVLSMVDGVLL--LVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEV---VD  142 (603)
T ss_pred             eEEEEecCCCcCCccchhhhhhhhcceEEE--EEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHH---HH
Confidence            568999999999997  1111244567888  999999999999977788888899999999999985  45554   45


Q ss_pred             HHHHhhcC
Q psy15138         90 LLVRILKS   97 (320)
Q Consensus        90 ~~~~~l~~   97 (320)
                      ++..++..
T Consensus       143 ~vfDLf~~  150 (603)
T COG1217         143 EVFDLFVE  150 (603)
T ss_pred             HHHHHHHH
Confidence            55555543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=2.7e-09  Score=100.24  Aligned_cols=121  Identities=18%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCce----------------eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEE
Q psy15138        148 NGLKPDEYEASVATLQSLATTLEADC----------------VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVV  208 (320)
Q Consensus       148 ~~l~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~iv  208 (320)
                      .|....++..++-+.++|-+......                ..+.+.++.+.|...   ++++++++|.   |+.++++
T Consensus       219 lg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~---r~iL~~isf~i~~g~tvAiV  295 (497)
T COG5265         219 LGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR---RPILNGISFTIPLGKTVAIV  295 (497)
T ss_pred             hHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc---chhhcCccccccCccEEEEE
Confidence            45556677777777776665432211                123455555555443   4556666665   9999999


Q ss_pred             cCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCcceeeeccccCC-ccccceeecCCC
Q psy15138        209 GNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGRTSSVGNDILGF-DSVGNVVNKPEH  272 (320)
Q Consensus       209 GpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~  272 (320)
                      ||||+||||++++|- +++++.+|.|.+++.+.   .....+..++.++|+...| ++...++.++..
T Consensus       296 g~SG~gKsTI~rllf-RFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~  362 (497)
T COG5265         296 GESGAGKSTILRLLF-RFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP  362 (497)
T ss_pred             eCCCCcHHHHHHHHH-HHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc
Confidence            999999999999999 99999999999986552   2222334445555555444 555566655543

>KOG1144|consensus

Probab=98.83  E-value=4.7e-08  Score=96.97  Aligned_cols=62  Identities=27%  Similarity=0.252  Sum_probs=59.6

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      ++.+||+||||.|-  +--|++..|+++|  ||+...|+.+||.|.+.++|.-..|+||+|||+|.
T Consensus       541 g~lvIdtpghEsFtnlRsrgsslC~~aIl--vvdImhGlepqtiESi~lLR~rktpFivALNKiDR  604 (1064)
T KOG1144|consen  541 GLLVIDTPGHESFTNLRSRGSSLCDLAIL--VVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDR  604 (1064)
T ss_pred             eeEEecCCCchhhhhhhhccccccceEEE--EeehhccCCcchhHHHHHHHhcCCCeEEeehhhhh
Confidence            58899999999999  8899999999999  99999999999999999999999999999999994

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.83  E-value=4.9e-09  Score=93.94  Aligned_cols=82  Identities=22%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      ...+.++|+|||.+|.  +..+...+|.+++  |+++.+|+..+++++...++..++|.++++||+|+.... .+..+++
T Consensus        63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~Il--Vvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~  139 (237)
T cd04168          63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAIL--VISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQE  139 (237)
T ss_pred             CEEEEEEeCCCccchHHHHHHHHHHhCeEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHH
Confidence            3468899999999998  5666788899988  999999999999999999999999999999999998654 4778888


Q ss_pred             HHHhhcC
Q psy15138         91 LVRILKS   97 (320)
Q Consensus        91 ~~~~l~~   97 (320)
                      ++..+..
T Consensus       140 i~~~~~~  146 (237)
T cd04168         140 IKEKLSS  146 (237)
T ss_pred             HHHHHCC
Confidence            8887654

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PLN03232 ABC transporter C family member; Provisional

Probab=98.82  E-value=3.7e-09  Score=116.68  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=62.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS  251 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~  251 (320)
                      .++++++++.|... ....+++++++.   |+.++|+||||||||||+++|. |+++|.+|.+..         ..+.++
T Consensus       614 ~I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl-G~~~~~~G~i~~---------~~~~Ia  682 (1495)
T PLN03232        614 AISIKNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML-GELSHAETSSVV---------IRGSVA  682 (1495)
T ss_pred             cEEEEeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCcccCCCEEE---------ecCcEE
Confidence            35666666655421 113457777765   9999999999999999999999 999999987642         145677


Q ss_pred             eeeccccCC-ccccceeecCC
Q psy15138        252 SVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       252 ~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      .++|+.+.| .+..+|+.++.
T Consensus       683 yv~Q~p~Lf~gTIreNI~fg~  703 (1495)
T PLN03232        683 YVPQVSWIFNATVRENILFGS  703 (1495)
T ss_pred             EEcCccccccccHHHHhhcCC
Confidence            777777766 56777777653

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.82  E-value=1.7e-08  Score=84.30  Aligned_cols=53  Identities=21%  Similarity=0.207  Sum_probs=34.9

Q ss_pred             chhhhccceecCCCCchhHHHHH-HHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         37 DHSMLQSKVGANAGIVGMTKEHL-GLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        37 d~~~l~~vv~a~~g~~~~t~~~l-~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      |.+++  |+++.++.......-. ..++..+.|.++|+||+|+.+.+.+++.+..+
T Consensus         1 Dvvl~--VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~   54 (155)
T cd01849           1 DVILE--VLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL   54 (155)
T ss_pred             CEEEE--EEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH
Confidence            45555  9999887655433222 35566778999999999998765444443333

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK00007 elongation factor G; Reviewed

Probab=98.81  E-value=4.3e-09  Score=108.04  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=70.1

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      +..+.+||+|||.+|.  +..+...+|.+++  ||+|.+|+.+||++++..++.+++|.++++||+|+.... +...+++
T Consensus        74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vl--Vvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~  150 (693)
T PRK00007         74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVA--VFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQ  150 (693)
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEE--EEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHH
Confidence            4568999999999998  7777888999988  999999999999999999999999999999999998644 4556677


Q ss_pred             HHHhhc
Q psy15138         91 LVRILK   96 (320)
Q Consensus        91 ~~~~l~   96 (320)
                      +++.+.
T Consensus       151 i~~~l~  156 (693)
T PRK00007        151 IKDRLG  156 (693)
T ss_pred             HHHHhC
Confidence            766554

>PRK10218 GTP-binding protein; Provisional

Probab=98.75  E-value=8.1e-09  Score=103.84  Aligned_cols=80  Identities=19%  Similarity=0.090  Sum_probs=67.2

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +......+|.+++  |+++.+|++++|+.++..+..+++|.++++||+|+.. ...+..++++
T Consensus        68 ~~inliDTPG~~df~~~v~~~l~~aDg~IL--VVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~-a~~~~vl~ei  144 (607)
T PRK10218         68 YRINIVDTPGHADFGGEVERVMSMVDSVLL--VVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPG-ARPDWVVDQV  144 (607)
T ss_pred             EEEEEEECCCcchhHHHHHHHHHhCCEEEE--EEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCC-CchhHHHHHH
Confidence            457899999999999  5666788999988  9999999999999999999999999999999999864 3345556666


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...+.
T Consensus       145 ~~l~~  149 (607)
T PRK10218        145 FDLFV  149 (607)
T ss_pred             HHHHh
Confidence            66553

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.75  E-value=4.2e-08  Score=96.57  Aligned_cols=64  Identities=19%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             ceEEEeCCCcch--------hh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHER--------DD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~--------~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||++.        |.  .......+|.+++  |++++.+......+-...++..+.|+++|+||+|+..
T Consensus        87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~--VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~  160 (472)
T PRK03003         87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLF--VVDATVGATATDEAVARVLRRSGKPVILAANKVDDER  160 (472)
T ss_pred             EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence            467889999873        22  1222456788877  9999998876655566677777889999999999864

>PTZ00416 elongation factor 2; Provisional

Probab=98.73  E-value=1e-08  Score=107.12  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=70.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC----------h
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP----------P   81 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~----------~   81 (320)
                      ..+.|+|+|||.+|.  +..+...+|.+++  ||++.+|+.+||++++..+...++|.++++||+|+.-          -
T Consensus        92 ~~i~liDtPG~~~f~~~~~~al~~~D~ail--Vvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~  169 (836)
T PTZ00416         92 FLINLIDSPGHVDFSSEVTAALRVTDGALV--VVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY  169 (836)
T ss_pred             eEEEEEcCCCHHhHHHHHHHHHhcCCeEEE--EEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence            358999999999999  8888899999999  9999999999999999999999999999999999861          1


Q ss_pred             hHHHHHHHHHHHhhc
Q psy15138         82 NVLQDTLKLLVRILK   96 (320)
Q Consensus        82 ~~le~~l~~~~~~l~   96 (320)
                      ..+...+++++..+.
T Consensus       170 ~~~~~ii~~in~~l~  184 (836)
T PTZ00416        170 QNFVKTIENVNVIIA  184 (836)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            456677777776543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.70  E-value=2.8e-08  Score=104.60  Aligned_cols=65  Identities=28%  Similarity=0.293  Sum_probs=59.4

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .++.|+|+|||++|.  +..+...+|.+++  |+++++|++++|.+++.+++..++|.++++||+|+..
T Consensus       526 p~i~fiDTPGhe~F~~lr~~g~~~aDivlL--VVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        526 PGLLFIDTPGHEAFTSLRKRGGSLADLAVL--VVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP  592 (1049)
T ss_pred             CcEEEEECCCcHHHHHHHHhhcccCCEEEE--EEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence            358999999999998  6667788999988  9999999999999999999999999999999999863

>KOG0462|consensus

Probab=98.70  E-value=2.5e-08  Score=96.17  Aligned_cols=79  Identities=20%  Similarity=0.251  Sum_probs=63.3

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC--ChhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC--PPNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~--~~~~le~~   87 (320)
                      ..+-+-+||+|||-+|-  ---..+..|-++|  ||+|.+|++.||.--+.+|.-.++.+|.||||+|+.  +++.   +
T Consensus       123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lL--vVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~---V  197 (650)
T KOG0462|consen  123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALL--VVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPER---V  197 (650)
T ss_pred             CceEEEeecCCCcccccceehehhhhcCceEE--EEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHH---H
Confidence            34568899999999999  2222556677888  999999999999999999999999999999999995  4545   4


Q ss_pred             HHHHHHhh
Q psy15138         88 LKLLVRIL   95 (320)
Q Consensus        88 l~~~~~~l   95 (320)
                      +.++...+
T Consensus       198 ~~q~~~lF  205 (650)
T KOG0462|consen  198 ENQLFELF  205 (650)
T ss_pred             HHHHHHHh
Confidence            45555543

>KOG0054|consensus

Probab=98.68  E-value=2.3e-08  Score=107.05  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=75.1

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCcceeeeccccCC-cccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGRTSSVGNDILGF-DSVG  264 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~~-~~~~  264 (320)
                      ..+++++++.   ||+|||||..|||||||+..|- ++.+|.+|+|.+++.+.   .....+.+++-.+|++..| .+..
T Consensus      1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred             cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence            4567777775   9999999999999999999999 99999999999986551   1122356677778877766 3455


Q ss_pred             ceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccccccc
Q psy15138        265 NVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMT  308 (320)
Q Consensus       265 ~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LS  308 (320)
                      .|+++...  .       .-+++.+.++.+++++...+.|.+|-
T Consensus      1232 ~NLDPf~e--~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1232 FNLDPFDE--Y-------SDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred             cccCcccc--c-------CHHHHHHHHHHhChHHHHhhCCcCCC
Confidence            55544221  1       12445566666766666666665553

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.68  E-value=1.7e-08  Score=104.24  Aligned_cols=65  Identities=22%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      ...+.|||+|||.+|.  +..+...+|.+++  ||++.+|+.++|+.++..+...++|+++++||+|+.
T Consensus        86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avl--Vvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIV--VVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL  152 (731)
T ss_pred             cEEEEEEcCCCccChHHHHHHHHHhcCEEEE--EEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence            4558999999999998  7777888899999  999999999999999999999999999999999975

>PRK12739 elongation factor G; Reviewed

Probab=98.68  E-value=1.7e-08  Score=103.74  Aligned_cols=81  Identities=16%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      ...+.|+|+|||.+|.  +..+...+|.+++  ||++.+|+.++|++++..++..++|.++++||+|+...+ ++..+++
T Consensus        72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~il--VvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~  148 (691)
T PRK12739         72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVA--VFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQ  148 (691)
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHH
Confidence            4568899999999998  6667888899988  999999999999999999999999999999999998643 5566677


Q ss_pred             HHHhhc
Q psy15138         91 LVRILK   96 (320)
Q Consensus        91 ~~~~l~   96 (320)
                      ++..+.
T Consensus       149 i~~~l~  154 (691)
T PRK12739        149 IKDRLG  154 (691)
T ss_pred             HHHHhC
Confidence            766654

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.66  E-value=7.4e-09  Score=90.19  Aligned_cols=29  Identities=24%  Similarity=0.345  Sum_probs=25.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      | +++|+||||||||||+++|+ |++++..|
T Consensus        23 g-~~~i~G~nGsGKStll~al~-~l~~~~~~   51 (197)
T cd03278          23 G-LTAIVGPNGSGKSNIIDAIR-WVLGEQSA   51 (197)
T ss_pred             C-cEEEECCCCCCHHHHHHHHH-HHhccccc
Confidence            6 79999999999999999999 99876643

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=2.3e-08  Score=94.30  Aligned_cols=80  Identities=19%  Similarity=0.252  Sum_probs=65.2

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+-++|+|||++|-  .---..+.|.++.  |++|-.|+.+||+.-+.+|++.++|++-.+||+|....+=+| .|.++
T Consensus        81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvM--VIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~E-LLdEi  157 (528)
T COG4108          81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVM--VIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLE-LLDEI  157 (528)
T ss_pred             eEEeccCCCCccccchhHHHHHHhhheeeE--EEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHH-HHHHH
Confidence            458889999999998  1111335677777  999999999999999999999999999999999998666553 56777


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      .+.|.
T Consensus       158 E~~L~  162 (528)
T COG4108         158 EEELG  162 (528)
T ss_pred             HHHhC
Confidence            77665

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.65  E-value=8.1e-08  Score=78.95  Aligned_cols=48  Identities=10%  Similarity=0.056  Sum_probs=34.3

Q ss_pred             CccchhhhccceecCCCCchhHHHHHHHHHHc--CCCcEEEEeCCCCCChhH
Q psy15138         34 SPADHSMLQSKVGANAGIVGMTKEHLGLALAL--SVPVFVVVTKIDMCPPNV   83 (320)
Q Consensus        34 ~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~   83 (320)
                      ..+|.+++  |+++..+......+-.......  +.|.++++||+|+.+.+.
T Consensus        10 ~~aD~vl~--ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~   59 (141)
T cd01857          10 ERSDIVVQ--IVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ   59 (141)
T ss_pred             hhCCEEEE--EEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHH
Confidence            45677777  9999988766544444444444  779999999999976543

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.64  E-value=2.4e-08  Score=100.11  Aligned_cols=64  Identities=28%  Similarity=0.298  Sum_probs=58.9

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.|+|+|||++|.  +..+...+|.+++  |+++++|+++++.+++.+++..++|.++++||+|+.+
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~Il--VvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAIL--IVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP  135 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEE--EEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence            38899999999999  6667889999988  9999999999999999999999999999999999974

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.63  E-value=4.3e-08  Score=84.86  Aligned_cols=78  Identities=23%  Similarity=0.196  Sum_probs=60.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLV   92 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~   92 (320)
                      .+.++|+|||++|.  +.....++|.+++  |+++.+++.+++++.+..+...++|+++++||+|+... ..+..++++.
T Consensus        66 ~~~l~DtpG~~~~~~~~~~~~~~~d~~il--V~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~-~~~~~~~~~~  142 (194)
T cd01891          66 KINIVDTPGHADFGGEVERVLSMVDGVLL--LVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDA-RPEEVVDEVF  142 (194)
T ss_pred             EEEEEECCCcHHHHHHHHHHHHhcCEEEE--EEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHH
Confidence            47789999999998  4455678899888  99999998888888777777788999999999999642 2333444444


Q ss_pred             Hhh
Q psy15138         93 RIL   95 (320)
Q Consensus        93 ~~l   95 (320)
                      ..+
T Consensus       143 ~~~  145 (194)
T cd01891         143 DLF  145 (194)
T ss_pred             HHH
Confidence            443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.62  E-value=1.5e-07  Score=97.08  Aligned_cols=65  Identities=20%  Similarity=0.179  Sum_probs=50.3

Q ss_pred             ceEEEeCCCcch--------hh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHER--------DD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~--------~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+||.++        |.  .......+|.+++  |+++++|+.+...+-...++..+.|+++|+||+|+...
T Consensus       324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~--VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVF--VVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence            477899999764        22  2233567888877  99999998877766667777788899999999998654

>KOG0054|consensus

Probab=98.61  E-value=4.5e-08  Score=104.92  Aligned_cols=68  Identities=26%  Similarity=0.289  Sum_probs=57.4

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC-ccccceeec
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF-DSVGNVVNK  269 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~v~~  269 (320)
                      .++++++.   |+.+||+||.||||||||..|. |.++..+|.+.++          |.+++++|..+-+ .++.+|+.+
T Consensus       536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiL-GEm~~~sG~v~v~----------gsiaYv~Q~pWI~ngTvreNILF  604 (1381)
T KOG0054|consen  536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAIL-GEMPKLSGSVAVN----------GSVAYVPQQPWIQNGTVRENILF  604 (1381)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHh-cCcccccceEEEc----------CeEEEeccccHhhCCcHHHhhhc
Confidence            67777765   9999999999999999999999 9999999999885          4477888877765 577888887


Q ss_pred             CCC
Q psy15138        270 PEH  272 (320)
Q Consensus       270 ~~~  272 (320)
                      +..
T Consensus       605 G~~  607 (1381)
T KOG0054|consen  605 GSP  607 (1381)
T ss_pred             Ccc
Confidence            654

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.61  E-value=1.2e-08  Score=92.06  Aligned_cols=37  Identities=24%  Similarity=0.189  Sum_probs=30.4

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceeeec
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHARQK  237 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~~~  237 (320)
                      |....++|+||||||||||+++|+ +++.+. .|.++..
T Consensus        23 ~~~~~~~IvG~NGsGKStll~Ai~-~ll~~~~~~~~r~~   60 (251)
T cd03273          23 FDPQFNAITGLNGSGKSNILDAIC-FVLGITNLSTVRAS   60 (251)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHH-HHhccccccccccc
Confidence            345678999999999999999999 998876 4566654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd04167 Snu114p Snu114p subfamily

Probab=98.60  E-value=5.5e-08  Score=85.60  Aligned_cols=64  Identities=20%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      ..+.++|+|||++|.  +..+...+|.+++  |+++.++...++++++..+...++|.++++||+|++
T Consensus        71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~ll--VvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVL--VVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEEECCCCcchHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            347889999999997  6666778899988  999999998888888888888888999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.59  E-value=2.3e-07  Score=77.52  Aligned_cols=66  Identities=32%  Similarity=0.323  Sum_probs=56.2

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ...+.++|+|||++|.  .-.+...+|.+++  |++++++..+++.+.+..++..++|+++++||+|+..
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~--v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~  116 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAIL--VVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN  116 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEE--EEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence            3468899999999988  3334567888877  9999999989999999999999999999999999874

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.58  E-value=5.6e-08  Score=98.03  Aligned_cols=79  Identities=18%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      +..+.++|+|||++|.  +......+|.+++  |+++++|+..+|.+++..+...++|.++++||+|+... ..+...++
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aIL--VVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a-~~~~v~~e  149 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALL--VVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA-DPERVKQE  149 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEE--EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc-cHHHHHHH
Confidence            3458899999999998  4455667888888  99999999999999999998889999999999998643 23344455


Q ss_pred             HHHh
Q psy15138         91 LVRI   94 (320)
Q Consensus        91 ~~~~   94 (320)
                      +...
T Consensus       150 i~~~  153 (600)
T PRK05433        150 IEDV  153 (600)
T ss_pred             HHHH
Confidence            5443

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.57  E-value=6.3e-08  Score=75.53  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=31.0

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      +++++++.   |+.++|+||||||||||++++.       +|.+.+.+.+
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~d   46 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDD   46 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEe
Confidence            34444443   8899999999999999999986       6777776443

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0065|consensus

Probab=98.56  E-value=6.3e-08  Score=102.12  Aligned_cols=120  Identities=22%  Similarity=0.218  Sum_probs=70.4

Q ss_pred             cceeccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCC--Cceeeeccccchhh---hhcCcceeeeccccCCc
Q psy15138        190 LLRKRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNG--RGHARQKLFRHKHE---MESGRTSSVGNDILGFD  261 (320)
Q Consensus       190 ~~~~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~--~G~i~~~~~~~~~~---~~~g~v~~~~~~~~~~~  261 (320)
                      +-++.|++++-   .|..+||+|+|||||||||++|+ |...-+  +|+|++++.....+   +..|++.|.--+.. -.
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA-~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~-~~  879 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA-GRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSP-EL  879 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh-cCcccceEEeEEEECCeeCchhhhccccceeecccccCc-cc
Confidence            34566666653   39999999999999999999999 775433  57778876654322   34566665433322 23


Q ss_pred             cccceeecCCC----CCCCHHhHHHHHHHHHHHhcccCCcccccccc----ccccCCCCCE
Q psy15138        262 SVGNVVNKPEH----GSLDWVKICERSAKVITFIDLAGHERYLKTTV----FGMTGHVPDF  314 (320)
Q Consensus       262 ~~~~~v~~~~~----~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~----~~LSG~~~~~  314 (320)
                      ++.+.+.+...    ...+..+..+.++++++++++   +++.+..+    .|||..+.-.
T Consensus       880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL---~~~~daiVG~~G~GLs~eQRKr  937 (1391)
T KOG0065|consen  880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLEL---KEYADALVGLPGSGLSTEQRKR  937 (1391)
T ss_pred             chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCc---hhhhhhhccCCCCCCCHHHhce
Confidence            44444443322    223334433445566665555   54444433    4587755433

>cd04169 RF3 RF3 subfamily

Probab=98.56  E-value=8.4e-08  Score=87.47  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +..+...+|.+++  |+++..|+..++.+.+..+...++|.++++||+|+.... ....++++
T Consensus        71 ~~i~liDTPG~~df~~~~~~~l~~aD~~Il--Vvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l  147 (267)
T cd04169          71 CVINLLDTPGHEDFSEDTYRTLTAVDSAVM--VIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEI  147 (267)
T ss_pred             EEEEEEECCCchHHHHHHHHHHHHCCEEEE--EEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHH
Confidence            458899999999998  4555677899988  999999999999988899988999999999999986542 33445666


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      +..+.
T Consensus       148 ~~~l~  152 (267)
T cd04169         148 EEELG  152 (267)
T ss_pred             HHHHC
Confidence            66543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01890 LepA LepA subfamily

Probab=98.56  E-value=1.8e-07  Score=79.34  Aligned_cols=105  Identities=17%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLV   92 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~   92 (320)
                      .+.|+|+|||++|.  +......+|.+++  |+++.++...++.+++..+...++|.++++||+|+.... .....+++.
T Consensus        68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~--v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~  144 (179)
T cd01890          68 LLNLIDTPGHVDFSYEVSRSLAACEGALL--LVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD-PERVKQQIE  144 (179)
T ss_pred             EEEEEECCCChhhHHHHHHHHHhcCeEEE--EEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC-HHHHHHHHH
Confidence            36789999999998  4444667888888  999999888888888877767788999999999986432 223334444


Q ss_pred             HhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138         93 RILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS  126 (320)
Q Consensus        93 ~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~  126 (320)
                      +.+.   +...+ -+.....+.+..+++...+..
T Consensus       145 ~~~~---~~~~~-~~~~Sa~~g~gi~~l~~~l~~  174 (179)
T cd01890         145 DVLG---LDPSE-AILVSAKTGLGVEDLLEAIVE  174 (179)
T ss_pred             HHhC---CCccc-EEEeeccCCCCHHHHHHHHHh
Confidence            4321   11100 112334555666666655543

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.55  E-value=7.1e-08  Score=97.21  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.|+|+|||++|.  +.....++|.+++  |+++++|+..+|.+++..+...++|.++++||+|+.... .+...+++
T Consensus        70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aIL--VvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el  146 (595)
T TIGR01393        70 YVLNLIDTPGHVDFSYEVSRSLAACEGALL--LVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEI  146 (595)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHhCCEEEE--EecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHH
Confidence            357899999999998  5556778899988  999999999999999988888899999999999996432 23344455


Q ss_pred             HHh
Q psy15138         92 VRI   94 (320)
Q Consensus        92 ~~~   94 (320)
                      ...
T Consensus       147 ~~~  149 (595)
T TIGR01393       147 EEV  149 (595)
T ss_pred             HHH
Confidence            443

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.55  E-value=2.9e-07  Score=78.45  Aligned_cols=56  Identities=20%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             chhhhccceecCCCCchhHHHHHHH--HHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHh
Q psy15138         37 DHSMLQSKVGANAGIVGMTKEHLGL--ALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRI   94 (320)
Q Consensus        37 d~~~l~~vv~a~~g~~~~t~~~l~l--~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~   94 (320)
                      |.++.  |++|..++.....+-..+  .+..+.|.++|+||+|+++++.+..+++.+.+.
T Consensus         1 DvVl~--VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~   58 (172)
T cd04178           1 DVILE--VLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE   58 (172)
T ss_pred             CEEEE--EEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence            44555  999998776544433334  223456899999999999888777776666553

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.54  E-value=8.4e-08  Score=95.29  Aligned_cols=80  Identities=16%  Similarity=0.256  Sum_probs=65.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +......+|.+++  |+++.+|+..++++.+..++..++|.++++||+|+.... ..+.++++
T Consensus        79 ~~inliDTPG~~df~~~~~~~l~~aD~aIl--VvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-~~~~l~~i  155 (526)
T PRK00741         79 CLINLLDTPGHEDFSEDTYRTLTAVDSALM--VIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-PLELLDEI  155 (526)
T ss_pred             EEEEEEECCCchhhHHHHHHHHHHCCEEEE--EEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-HHHHHHHH
Confidence            348899999999998  4444667899988  999999999999999999999999999999999986543 33455666


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      +..+.
T Consensus       156 ~~~l~  160 (526)
T PRK00741        156 EEVLG  160 (526)
T ss_pred             HHHhC
Confidence            65554

>cd01859 MJ1464 MJ1464

Probab=98.53  E-value=6.7e-07  Score=74.58  Aligned_cols=46  Identities=17%  Similarity=0.262  Sum_probs=33.5

Q ss_pred             ccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChh
Q psy15138         35 PADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        35 ~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~   82 (320)
                      .+|.+++  |++++++...+..+-...+...+.|.++|+||+|+.+.+
T Consensus        12 ~aD~vl~--V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~   57 (156)
T cd01859          12 ESDVVLE--VLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE   57 (156)
T ss_pred             hCCEEEE--EeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH
Confidence            4677777  999988776655443344555678999999999997543

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.52  E-value=1e-07  Score=98.00  Aligned_cols=81  Identities=16%  Similarity=0.122  Sum_probs=67.8

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      +..+.|+|+|||.+|.  +......+|.+++  |+++.+|+..++++++..++..++|.++++||+|+.... ++..+++
T Consensus        74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~il--Vvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~  150 (689)
T TIGR00484        74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVA--VLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQ  150 (689)
T ss_pred             CeEEEEEECCCCcchhHHHHHHHHHhCEEEE--EEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHH
Confidence            3558899999999998  4555677899988  999999999999999999999999999999999998644 4566677


Q ss_pred             HHHhhc
Q psy15138         91 LVRILK   96 (320)
Q Consensus        91 ~~~~l~   96 (320)
                      +...+.
T Consensus       151 i~~~l~  156 (689)
T TIGR00484       151 IKQRLG  156 (689)
T ss_pred             HHHHhC
Confidence            766554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0052|consensus

Probab=98.51  E-value=3.4e-08  Score=92.21  Aligned_cols=71  Identities=31%  Similarity=0.356  Sum_probs=61.1

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCC-CcEEEEeCCCCCC
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSV-PVFVVVTKIDMCP   80 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~   80 (320)
                      |....+.++|+|||.+|+  |+.|.+++|.+++  .|++..|.       .+|||||..||--|++ +.++.+||+|...
T Consensus        79 t~k~~i~iid~pgh~d~~k~mitg~sqaD~avl--iva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~  156 (391)
T KOG0052|consen   79 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL--IVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE  156 (391)
T ss_pred             ceeEEEEEecCCCCCceeeeEEeeEeeeceeEE--EEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence            455779999999999999  9999999999999  88884333       3799999999999999 8999999999865


Q ss_pred             hhH
Q psy15138         81 PNV   83 (320)
Q Consensus        81 ~~~   83 (320)
                      +.+
T Consensus       157 ~~~  159 (391)
T KOG0052|consen  157 PPY  159 (391)
T ss_pred             CCc
Confidence            543

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.51  E-value=8.1e-07  Score=84.74  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=73.7

Q ss_pred             CceEEEeCCCcchhh-ccC-CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD-DLP-EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~-~~~-~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.+||+|||-+|- -.+ ..++..-++|  ||+|..|+..||--.+.+|--.++.++-|+||+||.+.+ -+.+.+++
T Consensus        76 Y~lnlIDTPGHVDFsYEVSRSLAACEGalL--vVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad-pervk~eI  152 (603)
T COG0481          76 YVLNLIDTPGHVDFSYEVSRSLAACEGALL--VVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD-PERVKQEI  152 (603)
T ss_pred             EEEEEcCCCCccceEEEehhhHhhCCCcEE--EEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC-HHHHHHHH
Confidence            458899999999999 222 1334445677  999999999999999999999999999999999996422 23445555


Q ss_pred             HHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         92 VRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        92 ~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ...+- ..+..   -+..+..+.-..+++.+.+-.+
T Consensus       153 e~~iG-id~~d---av~~SAKtG~gI~~iLe~Iv~~  184 (603)
T COG0481         153 EDIIG-IDASD---AVLVSAKTGIGIEDVLEAIVEK  184 (603)
T ss_pred             HHHhC-CCcch---heeEecccCCCHHHHHHHHHhh
Confidence            55421 11222   2224456666666666666555

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.51  E-value=3.1e-07  Score=78.16  Aligned_cols=82  Identities=28%  Similarity=0.370  Sum_probs=65.1

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.|+|+|||.+|.  .......+|.+++  |+++.++.....++.+..++..+.|+++++||+|+...+.++...+++
T Consensus        62 ~~~~liDtpG~~~~~~~~~~~~~~~d~~i~--v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~  139 (189)
T cd00881          62 RRVNFIDTPGHEDFSSEVIRGLSVSDGAIL--VVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREI  139 (189)
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHHhcCEEEE--EEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHH
Confidence            357889999999987  3333457788777  999999998888888888888788999999999998766666666666


Q ss_pred             HHhhcC
Q psy15138         92 VRILKS   97 (320)
Q Consensus        92 ~~~l~~   97 (320)
                      ...+..
T Consensus       140 ~~~~~~  145 (189)
T cd00881         140 KELLGL  145 (189)
T ss_pred             HHHHcc
Confidence            666554

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.50  E-value=1.3e-07  Score=86.31  Aligned_cols=80  Identities=18%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||.+|.  +......+|.+++  |++++.|...++++.+..++..++|.++++||+|+... ..+..++++
T Consensus        64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~--Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l  140 (268)
T cd04170          64 HKINLIDTPGYADFVGETRAALRAADAALV--VVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAAL  140 (268)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHH
Confidence            467899999999998  5666778899988  99999999999999998899999999999999999765 345666777


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      +..+.
T Consensus       141 ~~~~~  145 (268)
T cd04170         141 QEAFG  145 (268)
T ss_pred             HHHhC
Confidence            66553

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.49  E-value=3.6e-07  Score=90.67  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-Cccccceee
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-FDSVGNVVN  268 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~v~  268 (320)
                      ..+++.++.   |+++-|.||||||||||+|.|+ |+.|-++|.|..-     .   -..+...+|.++. ..+..+.+.
T Consensus       407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaia-GLWP~g~G~I~~P-----~---~~~~lflpQ~PY~p~GtLre~l~  477 (604)
T COG4178         407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALA-GLWPWGSGRISMP-----A---DSALLFLPQRPYLPQGTLREALC  477 (604)
T ss_pred             eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHh-ccCccCCCceecC-----C---CCceEEecCCCCCCCccHHHHHh
Confidence            446666654   9999999999999999999999 9999999998763     1   1123445555432 234556666


Q ss_pred             cCCCC
Q psy15138        269 KPEHG  273 (320)
Q Consensus       269 ~~~~~  273 (320)
                      ++...
T Consensus       478 YP~~~  482 (604)
T COG4178         478 YPNAA  482 (604)
T ss_pred             CCCCC
Confidence            65543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.46  E-value=6.4e-07  Score=82.10  Aligned_cols=60  Identities=15%  Similarity=0.126  Sum_probs=38.1

Q ss_pred             CCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHc-CCCcEEEEeCCCCCChhHHHH
Q psy15138         22 RIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL-SVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        22 pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      |||=.=.   +-.....+|.++.  |++|..+......   .+.+.+ +.|.++|+||+|+.+.+..+.
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~--V~Dar~p~~~~~~---~i~~~l~~kp~IiVlNK~DL~~~~~~~~   68 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIE--VLDARIPLSSRNP---MIDEIRGNKPRLIVLNKADLADPAVTKQ   68 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCCCCCh---hHHHHHCCCCEEEEEEccccCCHHHHHH
Confidence            6774333   3344677898877  9999876553222   222323 458999999999976543333

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.46  E-value=9.3e-08  Score=85.06  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=25.4

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHH-HHH
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLL-GVL  222 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl-~~l  222 (320)
                      ..++++++|.   |++++|+||||||||||+ ..|
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            3467777776   999999999999999996 444

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01856 YlqF YlqF

Probab=98.45  E-value=6.5e-07  Score=76.02  Aligned_cols=58  Identities=17%  Similarity=0.114  Sum_probs=39.9

Q ss_pred             CCCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHc-CCCcEEEEeCCCCCChhH
Q psy15138         21 TRIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL-SVPVFVVVTKIDMCPPNV   83 (320)
Q Consensus        21 ~pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-~i~~~v~lnk~Dl~~~~~   83 (320)
                      -|||-.=.   ....+..+|.+++  |+++.++......+   +...+ +.|.++|+||+|+.+.+.
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~--v~D~~~~~~~~~~~---i~~~~~~k~~ilVlNK~Dl~~~~~   63 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIE--VRDARIPLSSRNPL---LEKILGNKPRIIVLNKADLADPKK   63 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEE--EeeccCccCcCChh---hHhHhcCCCEEEEEehhhcCChHH
Confidence            37775433   4555788998877  99998877654333   23333 568999999999976543

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.45  E-value=1.5e-07  Score=89.38  Aligned_cols=101  Identities=17%  Similarity=0.246  Sum_probs=59.6

Q ss_pred             cccCCcc-CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-C-ccccceeecCC
Q psy15138        195 VESQDFL-EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-F-DSVGNVVNKPE  271 (320)
Q Consensus       195 l~~~~~~-g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~v~~~~  271 (320)
                      ++.+.+. ||+++++||||-||||++++|+ |.++|++|. ..+       .++   ++-+|.... + .++.+.+....
T Consensus       359 V~~G~i~~gEvigilGpNgiGKTTFvk~LA-G~ikPdeg~-~~~-------~~v---SyKPQyI~~~~~gtV~~~l~~~~  426 (591)
T COG1245         359 VEEGEIYDGEVIGILGPNGIGKTTFVKLLA-GVIKPDEGS-EED-------LKV---SYKPQYISPDYDGTVEDLLRSAI  426 (591)
T ss_pred             ecCCeeecceEEEEECCCCcchHHHHHHHh-ccccCCCCC-Ccc-------ceE---eecceeecCCCCCcHHHHHHHhh
Confidence            4555554 9999999999999999999999 999999997 221       112   222222111 1 12222221111


Q ss_pred             CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138        272 HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD  313 (320)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~  313 (320)
                      ......      .--..++++-+.+++.+++.+.+|||+...
T Consensus       427 ~~~~~~------s~~~~ei~~pl~l~~i~e~~v~~LSGGELQ  462 (591)
T COG1245         427 RSAFGS------SYFKTEIVKPLNLEDLLERPVDELSGGELQ  462 (591)
T ss_pred             hhhccc------chhHHhhcCccchHHHHhcccccCCchhHH
Confidence            110000      001113444566688899999999997654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.45  E-value=1.4e-07  Score=91.17  Aligned_cols=45  Identities=13%  Similarity=0.090  Sum_probs=36.4

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eeeecccc
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HARQKLFR  240 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~~~~~~  240 (320)
                      .+++++++.   |+.++|+|||||||||||+  . |+..|.+| +|.+++.+
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~-~l~~~~sGg~I~ldg~~   68 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--E-NKRKFSEGYEFFLDATH   68 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--c-CCCCCCCCCEEEECCEE
Confidence            345666554   9999999999999999999  6 78888888 68887543

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.42  E-value=2.4e-07  Score=92.06  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  .......+|.+++  |+++..|+..+++..+.+++..++|.++++||+|+.... .++.++++
T Consensus        80 ~~inliDTPG~~df~~~~~~~l~~aD~aIl--VvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~-~~~ll~~i  156 (527)
T TIGR00503        80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLM--VIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRD-PLELLDEV  156 (527)
T ss_pred             eEEEEEECCChhhHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCC-HHHHHHHH
Confidence            457789999999998  4445678899988  999999999999999999999999999999999986422 23344455


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...+.
T Consensus       157 ~~~l~  161 (527)
T TIGR00503       157 ENELK  161 (527)
T ss_pred             HHHhC
Confidence            55443

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01855 YqeH YqeH

Probab=98.40  E-value=9.5e-07  Score=76.22  Aligned_cols=56  Identities=18%  Similarity=0.039  Sum_probs=33.2

Q ss_pred             CCcchhh-ccCC-CCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138         22 RIHERDD-DLPE-ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        22 pgh~~~~-~~~~-~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~   81 (320)
                      |.|.-|. ++.. ...+|.+++  |+++.+....... .+ .....+.|.++|+||+|+.+.
T Consensus        19 ~~~~~~~~~l~~~~~~ad~il~--VvD~~~~~~~~~~-~l-~~~~~~~~~ilV~NK~Dl~~~   76 (190)
T cd01855          19 PDEDFILNLLSSISPKKALVVH--VVDIFDFPGSLIP-RL-RLFGGNNPVILVGNKIDLLPK   76 (190)
T ss_pred             ChHHHHHHHHHhcccCCcEEEE--EEECccCCCccch-hH-HHhcCCCcEEEEEEchhcCCC
Confidence            4444344 3333 355677766  9999875433221 22 123345689999999999743

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=2.8e-07  Score=93.71  Aligned_cols=81  Identities=19%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      +..+.+||+|||-+|.  .-......|.+++  |++|.+|+++||.-=+.-|...++|.++++||||....+ +....++
T Consensus        75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavv--VvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~-~~~~~~~  151 (697)
T COG0480          75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVV--VVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD-FYLVVEQ  151 (697)
T ss_pred             ceEEEEeCCCCccccHHHHHHHHHhhcceEE--EEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC-hhhhHHH
Confidence            4679999999999999  4444567788988  999999999999988899999999999999999976432 3344455


Q ss_pred             HHHhhc
Q psy15138         91 LVRILK   96 (320)
Q Consensus        91 ~~~~l~   96 (320)
                      +...|.
T Consensus       152 l~~~l~  157 (697)
T COG0480         152 LKERLG  157 (697)
T ss_pred             HHHHhC
Confidence            554443

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.36  E-value=3.6e-07  Score=94.34  Aligned_cols=65  Identities=22%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      +..+.++|+|||.+|.  +..+...+|.+++  |+++.+|+..+|++++..+...++|.++++||+|..
T Consensus        85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~ll--Vvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIV--VVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL  151 (720)
T ss_pred             ceEEEEEeCCCccccHHHHHHHHHhcCEEEE--EEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence            3458899999999998  6677889999999  999999999999999999888999999999999986

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.34  E-value=8.5e-07  Score=74.78  Aligned_cols=74  Identities=19%  Similarity=0.193  Sum_probs=54.6

Q ss_pred             ccccCCCCC--ceEEEeCCCcchhh-ccC-CCCccchhhhccceecCCCCchhHHHHHHHHHHcC-CCcEEEEeCCCCCC
Q psy15138          6 DQTPCTAEN--AASVFETRIHERDD-DLP-EASPADHSMLQSKVGANAGIVGMTKEHLGLALALS-VPVFVVVTKIDMCP   80 (320)
Q Consensus         6 ~~~~~~~~~--~~~~~d~pgh~~~~-~~~-~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~-i~~~v~lnk~Dl~~   80 (320)
                      |+-+|+-.+  .+.+||+|||+||. |+. ...+++-+++  +|+.+.++..-.++-+.+..... +|.+|++||.|+.+
T Consensus        58 D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaiv--lVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~  135 (187)
T COG2229          58 DFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIV--LVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFD  135 (187)
T ss_pred             cccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEE--EEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCC
Confidence            455565544  79999999999999 432 2444666666  89988877664455567888888 79999999999964


Q ss_pred             h
Q psy15138         81 P   81 (320)
Q Consensus        81 ~   81 (320)
                      .
T Consensus       136 a  136 (187)
T COG2229         136 A  136 (187)
T ss_pred             C
Confidence            3

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.33  E-value=1.9e-06  Score=79.50  Aligned_cols=62  Identities=13%  Similarity=0.071  Sum_probs=39.4

Q ss_pred             CCCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHH
Q psy15138         21 TRIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        21 ~pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      =|||=.=.   .-.....+|.++.  |+++..+......+-.....  +.|.++|+||+|+.+.+..+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~--VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~   71 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIE--VLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKK   71 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEE--EEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHH
Confidence            37774433   3344667788877  99998876543332222222  568999999999986643333

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.30  E-value=8.9e-07  Score=76.31  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=32.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      |+.++|+||||||||||++.|+ |+++|+.|.+.+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~-~~i~~~~~~i~ie   59 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALL-AFIPPDERIITIE   59 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hhcCCCCCEEEEC
Confidence            7779999999999999999999 9999999988875

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.29  E-value=5.3e-07  Score=79.41  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |++++|+||||||||||+++|+ +.+
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~-~~l   52 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAIT-YAL   52 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHhe-eeE
Confidence            6789999999999999999999 654

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK13351 elongation factor G; Reviewed

Probab=98.27  E-value=8.8e-07  Score=91.17  Aligned_cols=82  Identities=15%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      ...+.++|+|||.+|.  +......+|.+++  |+++++|+..++.+++..+...++|.++++||+|+... .+...+++
T Consensus        72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~il--Vvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~  148 (687)
T PRK13351         72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVV--VFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA-DLFKVLED  148 (687)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC-CHHHHHHH
Confidence            3458889999999998  5555677888888  99999999999999999999999999999999998754 46677777


Q ss_pred             HHHhhcC
Q psy15138         91 LVRILKS   97 (320)
Q Consensus        91 ~~~~l~~   97 (320)
                      ++..+..
T Consensus       149 i~~~l~~  155 (687)
T PRK13351        149 IEERFGK  155 (687)
T ss_pred             HHHHHCC
Confidence            7776653

>KOG0060|consensus

Probab=98.27  E-value=1.5e-06  Score=84.95  Aligned_cols=65  Identities=17%  Similarity=0.132  Sum_probs=48.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-CccccceeecCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-FDSVGNVVNKPE  271 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~v~~~~  271 (320)
                      .|..+.|.||||||||+|+|+|+ |+.+..+|.+.......     ...+..++|.++. ..+..+.+.++.
T Consensus       460 ~g~~LLItG~sG~GKtSLlRvlg-gLWp~~~G~l~k~~~~~-----~~~lfflPQrPYmt~GTLRdQvIYP~  525 (659)
T KOG0060|consen  460 SGQNLLITGPSGCGKTSLLRVLG-GLWPSTGGKLTKPTDGG-----PKDLFFLPQRPYMTLGTLRDQVIYPL  525 (659)
T ss_pred             CCCeEEEECCCCCchhHHHHHHh-cccccCCCeEEecccCC-----CCceEEecCCCCccccchhheeeccC
Confidence            49999999999999999999999 99999999987642211     1346777777543 345556666653

>PRK12740 elongation factor G; Reviewed

Probab=98.21  E-value=1.5e-06  Score=89.20  Aligned_cols=80  Identities=20%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||.+|.  +..+...+|.+++  |+++..|...++..++..++..++|.++++||+|+... .+...++++
T Consensus        60 ~~i~liDtPG~~~~~~~~~~~l~~aD~vll--vvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~l  136 (668)
T PRK12740         60 HKINLIDTPGHVDFTGEVERALRVLDGAVV--VVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA-DFFRVLAQL  136 (668)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCeEEE--EEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHH
Confidence            458899999999987  5666778999988  99999999999999999999999999999999998753 345566666


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...+.
T Consensus       137 ~~~l~  141 (668)
T PRK12740        137 QEKLG  141 (668)
T ss_pred             HHHHC
Confidence            66543

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.20  E-value=8.6e-06  Score=77.89  Aligned_cols=63  Identities=24%  Similarity=0.211  Sum_probs=52.7

Q ss_pred             ceEEEeCCCcch-----hh------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         15 AASVFETRIHER-----DD------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~-----~~------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      .+.+|||+|-+.     |.      -......+|.+++  ||++.+|+++.-.+-..+.+-.+.|+++|+||+|-.
T Consensus        52 ~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilf--vVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~  125 (444)
T COG1160          52 EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILF--VVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL  125 (444)
T ss_pred             eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence            488999999874     22      2344778888888  999999999999988889997778999999999976

>KOG0064|consensus

Probab=98.20  E-value=3.9e-06  Score=81.26  Aligned_cols=61  Identities=15%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeecccc-CCccccceeecCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDIL-GFDSVGNVVNKPE  271 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~v~~~~  271 (320)
                      |..+.|+||||||||+|.|+|. |+.|...|....-     .   .-.+++.+|.+. ...+..+.+.++.
T Consensus       508 G~hLLItGPNGCGKSSLfRILg-gLWPvy~g~L~~P-----~---~~~mFYIPQRPYms~gtlRDQIIYPd  569 (728)
T KOG0064|consen  508 GMHLLITGPNGCGKSSLFRILG-GLWPVYNGLLSIP-----R---PNNIFYIPQRPYMSGGTLRDQIIYPD  569 (728)
T ss_pred             CceEEEECCCCccHHHHHHHHh-ccCcccCCeeecC-----C---CcceEeccCCCccCcCcccceeecCC
Confidence            8999999999999999999999 9999888876642     1   223567777653 2445556666654

>KOG2355|consensus

Probab=98.16  E-value=2.3e-06  Score=73.85  Aligned_cols=65  Identities=22%  Similarity=0.113  Sum_probs=44.6

Q ss_pred             eeeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .+++.+..+.|....+....++.-...|.|..+||.||||||||||+|+ |.--...|.|.+.+.+
T Consensus        13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLs-GKhmv~~~~v~Vlgrs   77 (291)
T KOG2355|consen   13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILS-GKHMVGGGVVQVLGRS   77 (291)
T ss_pred             eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhc-CcccccCCeEEEcCcC
Confidence            3455544444443333333333222339999999999999999999999 9877777888887554

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.16  E-value=5.1e-06  Score=70.85  Aligned_cols=82  Identities=18%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             CceEEEeCCCcc----------hhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRIHE----------RDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pgh~----------~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      +.+.++|+||+.          +|.     .+......|.+++  |++++.+....+.+.+.++...++|+++++||+|+
T Consensus        64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~--vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  141 (179)
T TIGR03598        64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVL--LMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADK  141 (179)
T ss_pred             CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEE--EecCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence            458899999963          333     1233345566766  99999988888888888888888999999999999


Q ss_pred             CChhHHHHHHHHHHHhhcC
Q psy15138         79 CPPNVLQDTLKLLVRILKS   97 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~   97 (320)
                      .+....+..++++++.+..
T Consensus       142 ~~~~~~~~~~~~i~~~l~~  160 (179)
T TIGR03598       142 LKKSELNKQLKKIKKALKK  160 (179)
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            8777777777777777654

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.16  E-value=1e-06  Score=78.91  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=24.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      .+++++|+||||||||||+++|. +.+..
T Consensus        22 ~~~~~~i~GpNGsGKStll~ai~-~~l~~   49 (243)
T cd03272          22 SPKHNVVVGRNGSGKSNFFAAIR-FVLSD   49 (243)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH-HHHcC
Confidence            37789999999999999999998 66543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.15  E-value=1.1e-06  Score=76.65  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             ccccCCcc-CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        194 RVESQDFL-EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       194 ~l~~~~~~-g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.+++++. |+.++|+||||||||||+|+|+ |..
T Consensus        16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~-~~~   49 (199)
T cd03283          16 VANDIDMEKKNGILITGSNMSGKSTFLRTIG-VNV   49 (199)
T ss_pred             ecceEEEcCCcEEEEECCCCCChHHHHHHHH-HHH
Confidence            45555555 7899999999999999999998 754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.14  E-value=1.7e-06  Score=76.28  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=26.2

Q ss_pred             ecceeccccCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        189 YLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       189 ~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.....+++.++  ++++|+||||||||||+++|.
T Consensus        14 ~~~~~~l~~~~~--~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          14 YAGEQVIGPFHK--SFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CCCCeeeccCCC--CeEEEECCCCCCHHHHHHHHH
Confidence            334455555555  789999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd01895 EngA2 EngA2 subfamily

Probab=98.11  E-value=1.1e-05  Score=67.11  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=56.4

Q ss_pred             CceEEEeCCCcchh----------h---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHERD----------D---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~~----------~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ..+.++|+||+.++          .   ++.....+|.+++  |++++.+......+-+..+...+.|+++++||+|+..
T Consensus        50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~--v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~  127 (174)
T cd01895          50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLL--VIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE  127 (174)
T ss_pred             eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEE--EEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence            34789999998544          2   2333457788877  9999988877666556666667889999999999976


Q ss_pred             h--hHHHHHHHHHHHh
Q psy15138         81 P--NVLQDTLKLLVRI   94 (320)
Q Consensus        81 ~--~~le~~l~~~~~~   94 (320)
                      .  ..++...+.+...
T Consensus       128 ~~~~~~~~~~~~~~~~  143 (174)
T cd01895         128 KDSKTMKEFKKEIRRK  143 (174)
T ss_pred             ccHHHHHHHHHHHHhh
Confidence            5  4555555555554

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.08  E-value=1e-06  Score=73.79  Aligned_cols=63  Identities=19%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH  272 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~  272 (320)
                      +..++++|+||+|||||+|.|. +......|+|+-...       .|+........+.++....+++.|..
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~-~~~~~~t~~is~~~~-------rGkHTTt~~~l~~l~~g~~iIDTPGf   97 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALL-PEAKQKTGEISEKTG-------RGKHTTTHRELFPLPDGGYIIDTPGF   97 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHH-TSS----S---------------------SEEEEEETTSEEEECSHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hhcchhhhhhhcccC-------CCcccCCCeeEEecCCCcEEEECCCC
Confidence            6779999999999999999999 887777777765432       23333333333333444556665543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.06  E-value=3.1e-06  Score=72.91  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=24.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      |+.++|+||||||||||+++|+ +.+.+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~-~~~~~   28 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALR-QREQT   28 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHh-ccCCC
Confidence            6789999999999999999999 88765

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.05  E-value=4.4e-06  Score=76.20  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      ..++|+||||||||||++.|+ |.+.|++|++.+.+.+
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~-~~~~~~~G~i~~~g~~  148 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLA-RILSTGISQLGLRGKK  148 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHh-CccCCCCceEEECCEE
Confidence            468999999999999999999 9999999999887544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.05  E-value=3.7e-06  Score=73.61  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=29.1

Q ss_pred             CccCcEEEEEcCCCChHHHHHHHH----hcCcCCCCCceee
Q psy15138        199 DFLEIRVAVVGNVDAGKSTLLGVL----THGELDNGRGHAR  235 (320)
Q Consensus       199 ~~~g~~v~ivGpnGsGKSTLl~~l----~~G~l~~~~G~i~  235 (320)
                      +|...+++|+||||||||||+++|    . |..+|+.|.+.
T Consensus        19 ~~~~g~~~i~G~NGsGKTTLl~ai~~~l~-G~~~~~~~~~~   58 (204)
T cd03240          19 EFFSPLTLIVGQNGAGKTTIIEALKYALT-GELPPNSKGGA   58 (204)
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHHHHHc-CCCCccccccc
Confidence            343337999999999999999998    5 88888777654

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 52/326 (15%), Positives = 89/326 (27%), Gaps = 97/326 (29%)

Query: 11  TAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLG--------LA 62
           T +   S+    +  R  DLP      +    S +          ++ L           
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE------SIRDGLATWDNWKHVNC 352

Query: 63  LALSVPVFVVVTKIDMC----PPNVLQDTLKLLVRILKSPGCRKVP--VMNCLI---SPT 113
             L+       T I+       P   +     L  +   P    +P  ++  LI      
Sbjct: 353 DKLT-------TIIESSLNVLEPAEYRKMFDRLS-VF--PPSAHIPTILL-SLIWFDVIK 401

Query: 114 EEQFDLLQK-KIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEAD 172
            +   ++ K    SL++    E+   I            P  Y             LE  
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISI------------PSIY-------------LELK 436

Query: 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232
             L  +  L   +   Y + K  +S D +         +D    + +G   H  L N   
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPP------YLDQYFYSHIG--HH--LKNIEH 486

Query: 233 HARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFID 292
             R  LFR                 L F  +     K  H S  W       + + T   
Sbjct: 487 PERMTLFRMVF--------------LDFRFLE---QKIRHDSTAW---NASGSILNTLQQ 526

Query: 293 LAGHERYLKTTVFGMTGHVPDFGMLM 318
           L  ++ Y       +  + P +  L+
Sbjct: 527 LKFYKPY-------ICDNDPKYERLV 545

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 64/262 (24%)

Query: 67  VPVFVVVTKIDM-CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQ-----FDLL 120
           + VF      +  C     +D   +   IL       +     ++S          F  L
Sbjct: 22  LSVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHI-----IMSKDAVSGTLRLFWTL 71

Query: 121 QKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYE---ASVATLQSLATTLEADCVLLR 177
             K          E +    +     E  L+ + Y+   + + T +    ++     + +
Sbjct: 72  LSK---------QEEMVQKFV-----EEVLRIN-YKFLMSPIKT-EQRQPSMMTRMYIEQ 115

Query: 178 QRKLDNGLTGQYLLRKRVES-QDFLEIR-----------VAVVGNVDAGKSTL-LGVLTH 224
           + +L N    Q   +  V   Q +L++R           V + G + +GK+ + L V   
Sbjct: 116 RDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-- 171

Query: 225 GELDNGRGHARQKLFRHK-HEMESGRTSSVGNDI-----LGFDSVGNVVNKPEHGSLDWV 278
                   +  Q     K   +     +S    +     L +    N  ++ +H S   +
Sbjct: 172 ------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 279 KICERSAKVITFIDLAGHERYL 300
           +I    A++   +    +E  L
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.7
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.7
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.7
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.69
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.68
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.68
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.66
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.66
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.65
1g6h_A	257	High-affinity branched-chain amino acid transport	99.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.65
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.64
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.64
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.64
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.63
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.63
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.63
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.63
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.62
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.61
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.6
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.57
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.57
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.56
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.56
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.55
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.54
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.53
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.52
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.51
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.51
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.46
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.46
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.46
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.44
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.42
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.4
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.4
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.4
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.39
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.38
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.38
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.38
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.38
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.37
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.35
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.34
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.33
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.33
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.32
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.31
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.29
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.29
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.26
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.25
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.23
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.21
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.21
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.21
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.2
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.2
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.19
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.18
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.18
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.17
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.14
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.13
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.09
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.09
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.08
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.07
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.02
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.0
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.96
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.95
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.93
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.91
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.91
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.85
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.84
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.84
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.83
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.82
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.73
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.7
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.7
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.68
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.67
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.67
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.67
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.61
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.55
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.55
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.55
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.55
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.52
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.52
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.52
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.51
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.5
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.47
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.47
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.47
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.46
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.46
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.45
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.44
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.44
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.43
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.43
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.42
2og2_A	359	Putative signal recognition particle receptor; nuc	98.41
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.4
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.38
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.36
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.36
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.36
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.34
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.33
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.33
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.33
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.32
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.32
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.32
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.32
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.31
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.29
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.27
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.27
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.27
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.26
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.23
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.23
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.22
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.22
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.22
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.21
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.2
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.19
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.17
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.17
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.16
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.14
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.13
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.11
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.08
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.07
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.06
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.05
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.04
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.03
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.03
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.02
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.01
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.01
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.01
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.0
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.0
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.0
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.0
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.99
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.99
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.98
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.98
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.95
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.94
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.94
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.93
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.91
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.9
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.88
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.88
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.87
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.86
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.86
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.85
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.81
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.79
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.78
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.78
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.77
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.77
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.76
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.76
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.75
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.74
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.74
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.73
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.73
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.7
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.68
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.68
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.67
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.67
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.67
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.67
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.66
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.66
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.65
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.65
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.64
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.63
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.63
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.63
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.62
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.61
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.61
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.61
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.61
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.6
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.59
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.59
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.58
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.58
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.57
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.56
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.56
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.55
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.55
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.55
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.55
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.55
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.55
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.54
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.53
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.53
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.52
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.51
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.51
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.51
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.5
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.48
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.48
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.48
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.47
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.47
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.44
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.43
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.42
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.41
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.41
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.41
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.4
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.4
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.4
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.39
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.38
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.38
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.37
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.37
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.37
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.37
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.37
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.36
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.35
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.35
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.34
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.34
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.34
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.34
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.33
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.33
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.32
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.32
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.31
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.31
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.31
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.3
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.3
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.29
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.28
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.28
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.27
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.26
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.26
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.26
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.26
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.26
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.25
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.25
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.24
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.24
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.23
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.23
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.22
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.21
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.2
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.2
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.19
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.19
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.18
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.16
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.16
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.15
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.14
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.13
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.13
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.13
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.12
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.19
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.11
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.1
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.1
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.08
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.08
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.07
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.07
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.07
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.06
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.05
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.04
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.04
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.04
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.03
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.02
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.02
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.01
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.01
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	96.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.97
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.96
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.96
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.93
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.92
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.91
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	96.91
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	96.89
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.88
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.88
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.88
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.87
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.86
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.84
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.83
1via_A	175	Shikimate kinase; structural genomics, transferase	96.82
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.82
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.78
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.77
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.75
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.73
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.73
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.73
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.71
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.71
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.71
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.71
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	96.7
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.69
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.69
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.68
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.68
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.68
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.67
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.66
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.64
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.63
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.62
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.62
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.61
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.59
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.59
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.59
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.59
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.57
3ice_A	422	Transcription termination factor RHO; transcriptio	96.56
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.55
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.55
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.54
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.54
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.52
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.51
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.51
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.51
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.51
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.5
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.49
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.49
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.49
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.48
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.48
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.46
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.46
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.46
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.45
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.45
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.45
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.44
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.43
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.43
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.42
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.42
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.41
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.41
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.41
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.41
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.41
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.41
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.4
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.4
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.39
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.39
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.39
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.38
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.38
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.38
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.37
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.37
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.36
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.36
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.35
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.34
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.32
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.31
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.31
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.31
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.31
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.3
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.3
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.28
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.28
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.26
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.26
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.25
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.25
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.24
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.23
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.23
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.23
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.22
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.22
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.21
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.21
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.2
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.2
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.2
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.2
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	96.19
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.19
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.19
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.19
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.19
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	96.19
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.18
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.17
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.16
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.15
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.14
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.14
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.14
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.14
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.14
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.13
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.13
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.12
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.12
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.11
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.11
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.1
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.09
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.09
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.09
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.09
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.07
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.07
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.07

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.70  E-value=5e-18  Score=158.94  Aligned_cols=130  Identities=14%  Similarity=0.105  Sum_probs=88.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----h-hhhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----K-HEME  246 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~-~~~~  246 (320)
                      .++++++++    .|+...+++++++.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+.    . ....
T Consensus         4 ~l~i~~ls~----~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~p~~G~I~i~G~~i~~~~~~~~~~   78 (359)
T 3fvq_A            4 ALHIGHLSK----SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA-GFEQPDSGEISLSGKTIFSKNTNLPVR   78 (359)
T ss_dssp             CEEEEEEEE----EETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH-TSSCCSEEEEEETTEEEESSSCBCCGG
T ss_pred             EEEEEeEEE----EECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHh-cCCCCCCcEEEECCEECcccccccchh
Confidence            355665544    44556678888776   9999999999999999999999 99999999999986542    1 1112


Q ss_pred             cCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        247 SGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ...++.++|+...|  .++.+++.++.. ......+..   +++.++++.+|+.++.+++|.+|||++.
T Consensus        79 ~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~---~~v~~~l~~~gL~~~~~r~~~~LSGGq~  144 (359)
T 3fvq_A           79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQER---QRIEAMLELTGISELAGRYPHELSGGQQ  144 (359)
T ss_dssp             GSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHH---HHHHHHHHHHTCGGGTTSCGGGSCHHHH
T ss_pred             hCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHH---HHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence            23455566655444  356667766543 222333333   3444556666778899999999999653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.70  E-value=1.9e-18  Score=153.28  Aligned_cols=133  Identities=14%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---h
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---M  245 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~  245 (320)
                      ++++++++.|........+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..    ..   .
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            45566655554321124567777775   9999999999999999999999 999999999999864311    00   1


Q ss_pred             hcCcceeeeccccCC--ccccceeecCCC----CCCCHHhHHHHHHHHHHHhcccCCccc-cccccccccCCCC
Q psy15138        246 ESGRTSSVGNDILGF--DSVGNVVNKPEH----GSLDWVKICERSAKVITFIDLAGHERY-LKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~----~~~~~~~~~~~~~~~l~~l~l~gl~~~-~~~~~~~LSG~~~  312 (320)
                      +...++.++|+...+  .++.+++..+..    ......   +..+++.++++.+|+.+. .++++++|||++.
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  151 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE---ERRKRALECLKMAELEERFANHKPNQLSGGQQ  151 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHH---HHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHH---HHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence            111244444443332  245555544321    122222   233455566677777765 4899999999653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.70  E-value=2.5e-18  Score=161.18  Aligned_cols=134  Identities=13%  Similarity=0.068  Sum_probs=90.0

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--  244 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--  244 (320)
                      .+++++++++.|........++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..    .+  
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~-GL~~p~~G~I~i~G~~i~~~~~~~~~  101 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELT  101 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHH
Confidence            3678888777664332335577777776   9999999999999999999999 999999999999865411    11  


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..+..++.++|+...+  .++.+++.++.. ......+..   +++.++++.+|+.++.+++|++|||++
T Consensus       102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~---~~v~~lL~~vgL~~~~~~~~~~LSGGq  168 (366)
T 3tui_C          102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK---RRVTELLSLVGLGDKHDSYPSNLSGGQ  168 (366)
T ss_dssp             HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHH---HHHHHHHHHHTCGGGTTCCTTTSCHHH
T ss_pred             HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCCchHhcCChhhCCHHH
Confidence            1123344555544332  355566554322 223333333   345556666777889999999999964

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.69  E-value=5.3e-18  Score=159.85  Aligned_cols=129  Identities=15%  Similarity=0.049  Sum_probs=88.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS  251 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~  251 (320)
                      ++++++++    .|+...++++++|.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++
T Consensus         4 l~~~~l~~----~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~p~~G~I~i~G~~~~~~~~~~r~ig   78 (381)
T 3rlf_A            4 VQLQNVTK----AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA-GLETITSGDLFIGEKRMNDTPPAERGVG   78 (381)
T ss_dssp             EEEEEEEE----EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTCCGGGSCEE
T ss_pred             EEEEeEEE----EECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHH-cCCCCCCeEEEECCEECCCCCHHHCCEE
Confidence            55555544    44556678888776   9999999999999999999999 9999999999998654211 11123355


Q ss_pred             eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++|++..|  .++.+++.++.. ....+.+..   +++.++++.+|+.++.+++|++|||++.
T Consensus        79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~r~p~~LSGGqr  139 (381)
T 3rlf_A           79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN---QRVNQVAEVLQLAHLLDRKPKALSGGQR  139 (381)
T ss_dssp             EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHH---HHHHHHHHHTTCGGGTTCCGGGSCHHHH
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhcCChhHCCHHHH
Confidence            556655443  355666655432 233343333   3444556667778899999999999653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.68  E-value=3.9e-17  Score=153.89  Aligned_cols=130  Identities=15%  Similarity=0.060  Sum_probs=85.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v  250 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......+
T Consensus        11 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~i   85 (372)
T 1v43_A           11 EVKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA-GLEEPTEGRIYFGDRDVTYLPPKDRNI   85 (372)
T ss_dssp             CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred             eEEEEEEEEEE----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCceEEEECCEECCCCChhhCcE
Confidence            46666655444    445567777775   9999999999999999999999 9999999999998654210 0111234


Q ss_pred             eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +.++|+...|  .++.+++.++.. ......+.   .+++.++++.+|+.++.+++|++|||++.
T Consensus        86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~---~~~v~~~l~~~~L~~~~~r~~~~LSGGq~  147 (372)
T 1v43_A           86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI---DKRVRWAAELLQIEELLNRYPAQLSGGQR  147 (372)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHH---HHHHHHHHHHTTCGGGTTSCTTTCCSSCH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence            4445544333  356666666532 22233222   34455666677778899999999999764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.68  E-value=1.1e-17  Score=151.66  Aligned_cols=130  Identities=17%  Similarity=0.073  Sum_probs=85.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--------h
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--------H  243 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--------~  243 (320)
                      .++++++++.|..   ...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..        .
T Consensus         7 ~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~-Gl~~p~~G~I~~~G~~i~~~~~~~~~~   82 (275)
T 3gfo_A            7 ILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFN-GILKPSSGRILFDNKPIDYSRKGIMKL   82 (275)
T ss_dssp             EEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred             EEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCeEEEECCEECCcccccHHHH
Confidence            5677776655532   23467777775   9999999999999999999999 999999999999865421        1


Q ss_pred             hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ...+|+++|.+...+...++.+++.++.. ......+..   +++.++++.+|+.++.++++++|||++
T Consensus        83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~LSgGq  148 (275)
T 3gfo_A           83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR---KRVDNALKRTGIEHLKDKPTHCLSFGQ  148 (275)
T ss_dssp             HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHH---HHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred             hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhcCCcccCCHHH
Confidence            12244454443222222355555544322 223333333   344455666777889999999999964

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.66  E-value=2.7e-17  Score=154.28  Aligned_cols=128  Identities=17%  Similarity=0.112  Sum_probs=85.9

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS  251 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~  251 (320)
                      ++++++++.    |+...++++++|.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++
T Consensus         4 l~~~~l~~~----y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~ig   78 (359)
T 2yyz_A            4 IRVVNLKKY----FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA-GIYKPTSGEIYFDDVLVNDIPPKYREVG   78 (359)
T ss_dssp             EEEEEEEEE----ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred             EEEEEEEEE----ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHH-CCCCCCccEEEECCEECCCCChhhCcEE
Confidence            455555443    4445677777775   9999999999999999999999 9999999999998654211 11123455


Q ss_pred             eeeccccCC--ccccceeecCCCC-CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        252 SVGNDILGF--DSVGNVVNKPEHG-SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       252 ~~~~~~~~~--~~~~~~v~~~~~~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .++|+...|  .++.+++.++... .....   +..+++.++++.+|+.++.+++|++|||++
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~---~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq  138 (359)
T 2yyz_A           79 MVFQNYALYPHMTVFENIAFPLRARRISKD---EVEKRVVEIARKLLIDNLLDRKPTQLSGGQ  138 (359)
T ss_dssp             EECSSCCCCTTSCHHHHHHGGGSSSCSHHH---HTTHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence            555554333  3566666654321 21111   222345566667777889999999999965

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.66  E-value=3.4e-17  Score=147.85  Aligned_cols=129  Identities=17%  Similarity=0.105  Sum_probs=84.9

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hh
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HE  244 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~  244 (320)
                      ..++++++++    .|+...+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..      ..
T Consensus        10 ~~l~~~~l~~----~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~~   84 (266)
T 4g1u_C           10 ALLEASHLHY----HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLT-GYLSPSHGECHLLGQNLNSWQPKALA   84 (266)
T ss_dssp             CEEEEEEEEE----EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHT-SSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred             ceEEEEeEEE----EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECCEECCcCCHHHHh
Confidence            4567776554    44556678888776   9999999999999999999999 999999999999865421      11


Q ss_pred             hhcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        245 MESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      ..+++++|.+...+. .++.+++..+.... ......+   ++.++++.+|+.++.++++++|||++.
T Consensus        85 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LSgGq~  147 (266)
T 4g1u_C           85 RTRAVMRQYSELAFP-FSVSEVIQMGRAPY-GGSQDRQ---ALQQVMAQTDCLALAQRDYRVLSGGEQ  147 (266)
T ss_dssp             HHEEEECSCCCCCSC-CBHHHHHHGGGTTS-CSTTHHH---HHHHHHHHTTCSTTTTSBGGGCCHHHH
T ss_pred             heEEEEecCCccCCC-CCHHHHHHhhhhhc-CcHHHHH---HHHHHHHHcCChhHhcCCcccCCHHHH
Confidence            234555544332222 34555554433221 1122223   334455566667888999999999653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.65  E-value=3e-17  Score=144.58  Aligned_cols=129  Identities=14%  Similarity=0.028  Sum_probs=83.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h---h
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H---E  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~---~  244 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..    .   .
T Consensus         4 ~l~~~~l~~~y----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   78 (224)
T 2pcj_A            4 ILRAENIKKVI----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILG-LLDAPTEGKVFLEGKEVDYTNEKELSL   78 (224)
T ss_dssp             EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHT-TSSCCSEEEEEETTEECCSSCHHHHHH
T ss_pred             EEEEEeEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCCCCHHHHHH
Confidence            45666655444    445677777775   9999999999999999999999 999999999999764421    0   0


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .+...++.++|+...+  .++.+++..+.. .......   ..+++.++++.+|+.++.++++++|||++
T Consensus        79 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGq  145 (224)
T 2pcj_A           79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE---AKERGEYLLSELGLGDKLSRKPYELSGGE  145 (224)
T ss_dssp             HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred             HHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence            1112234444443222  244555543221 1122222   22344556666777888999999999964

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.65  E-value=4.5e-17  Score=146.37  Aligned_cols=131  Identities=18%  Similarity=0.080  Sum_probs=84.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h---h
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H---E  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~---~  244 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..    .   .
T Consensus         7 ~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (257)
T 1g6h_A            7 ILRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT-GFLKADEGRVYFENKDITNKEPAELYH   81 (257)
T ss_dssp             EEEEEEEEEEE----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             EEEEeeeEEEE----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            56777665444    445678888876   9999999999999999999999 999999999999864421    1   1


Q ss_pred             hhcCcceeeeccccCCccccceeecCCCC-CCCH----------HhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        245 MESGRTSSVGNDILGFDSVGNVVNKPEHG-SLDW----------VKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~~~~~~~v~~~~~~-~~~~----------~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..+++++|.+.. +...++.+++..+... ....          ....+..+++.++++.+|+.++.++++++|||++
T Consensus        82 ~~i~~v~q~~~l-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq  158 (257)
T 1g6h_A           82 YGIVRTFQTPQP-LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ  158 (257)
T ss_dssp             HTEEECCCCCGG-GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred             CCEEEEccCCcc-CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence            124455544322 1123555555543221 1110          0001122344556666777888999999999964

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.65  E-value=3.7e-17  Score=153.44  Aligned_cols=128  Identities=14%  Similarity=0.104  Sum_probs=85.4

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS  251 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~  251 (320)
                      ++++++++.|    +...+++++++.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++
T Consensus         4 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~ig   78 (362)
T 2it1_A            4 IKLENIVKKF----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA-GIYKPTSGKIYFDEKDVTELPPKDRNVG   78 (362)
T ss_dssp             EEEEEEEEES----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred             EEEEeEEEEE----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh-cCCCCCceEEEECCEECCcCCHhHCcEE
Confidence            5555554444    334567777765   9999999999999999999999 9999999999998654211 11123455


Q ss_pred             eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .++|+...|  .++.+++.++.. ......+.   .+++.++++.+|+.++.+++|++|||++
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~---~~~v~~~l~~~~L~~~~~r~~~~LSGGq  138 (362)
T 2it1_A           79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEI---DKKVREVAKMLHIDKLLNRYPWQLSGGQ  138 (362)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHH---HHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCchHhhCChhhCCHHH
Confidence            566654443  355666655421 12222222   3345556667777888999999999965

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.64  E-value=3.1e-17  Score=153.56  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGR  249 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~  249 (320)
                      ..++++++++.|.   +...++++++|.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+.. .......
T Consensus        13 ~~l~~~~l~~~y~---g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~   88 (355)
T 1z47_A           13 MTIEFVGVEKIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA-GLERPTKGDVWIGGKRVTDLPPQKRN   88 (355)
T ss_dssp             EEEEEEEEEECCT---TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred             ceEEEEEEEEEEc---CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEECCEECCcCChhhCc
Confidence            3567776665552   234466677765   9999999999999999999999 999999999999865421 1111234


Q ss_pred             ceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        250 TSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       250 v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ++.++|+...|  .++.+++.++.. ......+.   .+++.++++.+|+.++.+++|++|||++
T Consensus        89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~---~~~v~~~l~~~gL~~~~~r~~~~LSGGq  150 (355)
T 1z47_A           89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEM---DARVRELLRFMRLESYANRFPHELSGGQ  150 (355)
T ss_dssp             EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHH---HHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCChhHhcCCcccCCHHH
Confidence            55566654443  355666655322 22232222   3445566667777889999999999964

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.64  E-value=4.5e-17  Score=152.61  Aligned_cols=128  Identities=13%  Similarity=0.074  Sum_probs=86.7

Q ss_pred             eeeeecCCCeeeeeccee--ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hh
Q psy15138        176 LRQRKLDNGLTGQYLLRK--RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HE  244 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~--~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~  244 (320)
                      ++++++++.|    +...  ++++++|.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+..      ..
T Consensus         4 l~i~~l~~~y----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~~~   78 (353)
T 1oxx_K            4 IIVKNVSKVF----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA-GLDVPSTGELYFDDRLVASNGKLIVP   78 (353)
T ss_dssp             EEEEEEEEEE----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHH-TSSCCSEEEEEETTEEEEETTEESSC
T ss_pred             EEEEeEEEEE----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECcccccccCC
Confidence            4555554443    3344  67777775   9999999999999999999999 999999999999864421      11


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .....++.++|+...|  .++.+++.++.. ......+.   .+++.++++.+|+.++.+++|++|||++
T Consensus        79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~---~~~v~~~l~~~~L~~~~~~~~~~LSGGq  145 (353)
T 1oxx_K           79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI---RKRVEEVAKILDIHHVLNHFPRELSGAQ  145 (353)
T ss_dssp             GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHH---HHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred             hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence            1233456666665443  356666665432 22233322   3345556667777889999999999965

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.64  E-value=5.1e-17  Score=153.21  Aligned_cols=128  Identities=15%  Similarity=0.086  Sum_probs=85.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhh
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEM  245 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~  245 (320)
                      ++++++++.    |+...+++++++.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+..       ...
T Consensus         4 l~~~~l~~~----y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~~~~~~~~~~~~~   78 (372)
T 1g29_1            4 VRLVDVWKV----FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA-GLEEPSRGQIYIGDKLVADPEKGIFVPP   78 (372)
T ss_dssp             EEEEEEEEE----ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-TSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             EEEEeEEEE----ECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHH-cCCCCCccEEEECCEECccccccccCCH
Confidence            556655444    4445677777775   9999999999999999999999 999999999999864321       111


Q ss_pred             hcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        246 ESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ....++.++|+...|  .++.+++.++.. ......+..   +++.++++.+|+.++.+++|++|||++
T Consensus        79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~r~~~~LSGGq  144 (372)
T 1g29_1           79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID---QRVREVAELLGLTELLNRKPRELSGGQ  144 (372)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHHTCGGGTTCCGGGSCHHH
T ss_pred             hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCCchHhcCCcccCCHHH
Confidence            123455556654433  355666655422 222333222   344556666677888999999999965

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.64  E-value=7.2e-17  Score=145.42  Aligned_cols=129  Identities=18%  Similarity=0.108  Sum_probs=83.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME  246 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~  246 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..     ....
T Consensus        24 ~l~i~~l~~~y----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~   98 (263)
T 2olj_A           24 MIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKV   98 (263)
T ss_dssp             SEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEESSSTTCCHHHH
T ss_pred             eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHH-cCCCCCCcEEEECCEECCCccccHHHH
Confidence            46777665544    345577777775   9999999999999999999999 999999999999864321     0011


Q ss_pred             cCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        247 SGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       247 ~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ...++.++|+...+  .++.+++..+.  .........   .+++.++++.+|+.++.++++.+|||++
T Consensus        99 ~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~L~~~~~~~~~~LSgGq  164 (263)
T 2olj_A           99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKA---EAKAMELLDKVGLKDKAHAYPDSLSGGQ  164 (263)
T ss_dssp             HHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHH---HHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred             hCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHCCCchHhcCChhhCCHHH
Confidence            12234444443222  24555554421  112222222   2344556666777888999999999965

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.63  E-value=7.2e-17  Score=145.41  Aligned_cols=129  Identities=12%  Similarity=0.063  Sum_probs=83.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---------  242 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---------  242 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..         
T Consensus         6 ~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   80 (262)
T 1b0u_A            6 KLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQL   80 (262)
T ss_dssp             CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEECCEEECTTSSE
T ss_pred             eEEEeeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEccccccccccc
Confidence            46666665444    445567777775   9999999999999999999999 999999999999764321         


Q ss_pred             -----h--hhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccc-cccccccccCC
Q psy15138        243 -----H--EMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERY-LKTTVFGMTGH  310 (320)
Q Consensus       243 -----~--~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~-~~~~~~~LSG~  310 (320)
                           .  ......++.++|+...+  .++.+++..+.  ........   ..+++.++++.+|+.++ .++++++|||+
T Consensus        81 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSgG  157 (262)
T 1b0u_A           81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD---ARERALKYLAKVGIDERAQGKYPVHLSGG  157 (262)
T ss_dssp             EESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHH---HHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred             cccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHH---HHHHHHHHHHHcCCCchhhcCCcccCCHH
Confidence                 0  01112244444443222  24555554421  11222222   22345556667777888 89999999996


Q ss_pred             C
Q psy15138        311 V  311 (320)
Q Consensus       311 ~  311 (320)
                      +
T Consensus       158 q  158 (262)
T 1b0u_A          158 Q  158 (262)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.63  E-value=9.1e-17  Score=142.93  Aligned_cols=130  Identities=16%  Similarity=0.071  Sum_probs=82.4

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES  247 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~  247 (320)
                      .++++++++.|    +...+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..    .....
T Consensus         6 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~   80 (240)
T 1ji0_A            6 VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFNGQDITNKPAHVINR   80 (240)
T ss_dssp             EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEeEEEEE----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCCHHHHHh
Confidence            46677665544    335567777775   9999999999999999999999 999999999999864421    11112


Q ss_pred             CcceeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..++.++|+...+  .++.+++..+...........+...++++.++  |+.++.++++++|||++
T Consensus        81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LSgGq  144 (240)
T 1ji0_A           81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP--RLKERLKQLGGTLSGGE  144 (240)
T ss_dssp             TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH--HHHTTTTSBSSSSCHHH
T ss_pred             CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc--cHhhHhcCChhhCCHHH
Confidence            2245555543332  25555555432111122222233444444442  35777889999999964

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.63  E-value=4.6e-16  Score=145.55  Aligned_cols=189  Identities=19%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             CCccchhhhccceecCCCCch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccccC
Q psy15138         33 ASPADHSMLQSKVGANAGIVG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLIS  111 (320)
Q Consensus        33 ~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~  111 (320)
                      ++++|++++  |.+.+..... ...++|..|+..++|++||+||+||++.+.. +.+++|...+...++.     +...+
T Consensus       128 ~anvD~v~i--v~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G~~-----v~~~S  199 (358)
T 2rcn_A          128 AANIDQIVI--VSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIGYR-----VLMVS  199 (358)
T ss_dssp             EECCCEEEE--EEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTTCC-----EEECB
T ss_pred             HhcCCEEEE--EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhH-HHHHHHHHHHHhCCCc-----EEEEe
Confidence            789999988  7666532222 4446788899999999999999999987542 2233444433333332     21222


Q ss_pred             -CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138        112 -PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL  190 (320)
Q Consensus       112 -gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                       .+...+..+.                                          .                          
T Consensus       200 a~~~~gl~~L~------------------------------------------~--------------------------  211 (358)
T 2rcn_A          200 SHTQDGLKPLE------------------------------------------E--------------------------  211 (358)
T ss_dssp             TTTTBTHHHHH------------------------------------------H--------------------------
T ss_pred             cCCCcCHHHHH------------------------------------------H--------------------------
Confidence             1111111110                                          0                          


Q ss_pred             ceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCC-CCCceeeeccccchhhhhcCcceeeeccccCCccccceeec
Q psy15138        191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD-NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNK  269 (320)
Q Consensus       191 ~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~-~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~  269 (320)
                              ...|++++|+||||||||||+++|+ |... |..|.|........+......+..+++....+++.+... .
T Consensus       212 --------~~~G~~~~lvG~sG~GKSTLln~L~-g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e-~  281 (358)
T 2rcn_A          212 --------ALTGRISIFAGQSGVGKSSLLNALL-GLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE-F  281 (358)
T ss_dssp             --------HHTTSEEEEECCTTSSHHHHHHHHH-CCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT-C
T ss_pred             --------hcCCCEEEEECCCCccHHHHHHHHh-ccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH-h
Confidence                    0125679999999999999999999 9999 999999875211111111222333333322222111100 1


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        270 PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .. ..+...   +....+.++++.+|+.++.+..+.++||++
T Consensus       282 ~l-~~l~~~---e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~  319 (358)
T 2rcn_A          282 GL-WHLEPE---QITQGFVEFHDYLGHCKYRDCKHDADPGCA  319 (358)
T ss_dssp             CC-CCCCHH---HHHHTSGGGGGGTTCSSSTTCCSSSCTTCH
T ss_pred             hh-cCCCHH---HHHHHHHHHHHHcCCchhcCCCcccCCHHH
Confidence            11 122222   223445677788888999999999999754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.63  E-value=7.3e-17  Score=144.87  Aligned_cols=131  Identities=12%  Similarity=0.028  Sum_probs=85.0

Q ss_pred             eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhc
Q psy15138        173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMES  247 (320)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~  247 (320)
                      +..++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+...  ....
T Consensus        13 ~~~l~i~~l~~~y----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~   87 (256)
T 1vpl_A           13 MGAVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS-TLIKPSSGIVTVFGKNVVEEPHEVR   87 (256)
T ss_dssp             -CCEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEETTTCHHHHH
T ss_pred             CCeEEEEEEEEEE----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCccHHHHh
Confidence            3567777766554    345567777775   9999999999999999999999 9999999999998644211  1112


Q ss_pred             CcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        248 GRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       248 g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..++.++|....+  .++.+++..... ........   .+++.++++.+|+.++.++++++|||++
T Consensus        88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LSgGq  151 (256)
T 1vpl_A           88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKIKDRVSTYSKGM  151 (256)
T ss_dssp             TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHCCGGGGGSBGGGCCHHH
T ss_pred             hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHH---HHHHHHHHHHCCCchHhcCChhhCCHHH
Confidence            3455555553322  244455443211 11122221   2334455666677888999999999964

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.62  E-value=1.6e-16  Score=144.43  Aligned_cols=132  Identities=16%  Similarity=0.069  Sum_probs=84.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME  246 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~  246 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..     ....
T Consensus        21 ~l~~~~l~~~y----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~   95 (279)
T 2ihy_A           21 LIQLDQIGRMK----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN-AYEPATSGTVNLFGKMPGKVGYSAETV   95 (279)
T ss_dssp             EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred             eEEEEeEEEEE----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCeEEEECCEEcccccCCHHHH
Confidence            57777765544    445677777775   9999999999999999999999 999999999999864321     1111


Q ss_pred             cCcceeeeccccC-C---ccccceeecCCCCC--CCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        247 SGRTSSVGNDILG-F---DSVGNVVNKPEHGS--LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       247 ~g~v~~~~~~~~~-~---~~~~~~v~~~~~~~--~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ...++.++|+... +   .++.+++..+....  .......+..+++.++++.+|+.++.++++.+|||++
T Consensus        96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq  166 (279)
T 2ihy_A           96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGE  166 (279)
T ss_dssp             HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred             cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence            2334555554321 2   25666665532110  0000001123345566667777888999999999965

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.61  E-value=1.9e-16  Score=143.04  Aligned_cols=116  Identities=18%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccc---cCCccccc
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDI---LGFDSVGN  265 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~---~~~~~~~~  265 (320)
                      ..+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.........++.++|+.   +...++.+
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e   98 (266)
T 2yz2_A           20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVA-GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD   98 (266)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH
Confidence            3467777765   9999999999999999999999 999999999999864421111122344444442   22235556


Q ss_pred             eeecCCCCCCCHHhHHHHHHHHHHHhcccCCc--cccccccccccCCC
Q psy15138        266 VVNKPEHGSLDWVKICERSAKVITFIDLAGHE--RYLKTTVFGMTGHV  311 (320)
Q Consensus       266 ~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~--~~~~~~~~~LSG~~  311 (320)
                      ++..+...........   +++.++++.+|+.  ++.++++++|||++
T Consensus        99 nl~~~~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~~~LSgGq  143 (266)
T 2yz2_A           99 EVAFAVKNFYPDRDPV---PLVKKAMEFVGLDFDSFKDRVPFFLSGGE  143 (266)
T ss_dssp             HHHHTTTTTCTTSCSH---HHHHHHHHHTTCCHHHHTTCCGGGSCHHH
T ss_pred             HHHHHHHhcCCHHHHH---HHHHHHHHHcCcCCcccccCChhhCCHHH
Confidence            6554322111111112   2344555667778  88899999999964

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.60  E-value=7.3e-17  Score=150.78  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=75.7

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cccccee
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVV  267 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v  267 (320)
                      +++++++.   |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++.++|+...|  .++.+++
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl   93 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIA-GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL   93 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHH-TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHH-cCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence            66667665   9999999999999999999999 9999999999998654211 11112345555554333  3555665


Q ss_pred             ecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        268 NKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       268 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.. ......      +++.++++.+|+.++.+++|++|||++.
T Consensus        94 ~~~~~~~~~~~~------~~v~~~l~~~~L~~~~~~~~~~LSgGq~  133 (348)
T 3d31_A           94 EFGMRMKKIKDP------KRVLDTARDLKIEHLLDRNPLTLSGGEQ  133 (348)
T ss_dssp             HHHHHHHCCCCH------HHHHHHHHHTTCTTTTTSCGGGSCHHHH
T ss_pred             HHHHHHcCCCHH------HHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence            54321 111111      3445566667778889999999999653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.60  E-value=2.3e-15  Score=138.18  Aligned_cols=66  Identities=18%  Similarity=0.228  Sum_probs=48.2

Q ss_pred             CceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHHcCCCcEEEEeCCCCCChhH
Q psy15138         14 NAASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSVPVFVVVTKIDMCPPNV   83 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~   83 (320)
                      +...+.|+  ||||..+  .-..++|.+++  |++++++..  ....+.+..++..++|+++|+||+|+.+...
T Consensus        63 ~~~~iwD~--qer~~~l~~~~~~~ad~vil--V~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~  132 (301)
T 1u0l_A           63 GSGVIENV--LHRKNLLTKPHVANVDQVIL--VVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDD  132 (301)
T ss_dssp             SSEEEEEE--CCCSCEETTTTEESCCEEEE--EECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH
T ss_pred             CeEEEEEE--ccccceeeccccccCCEEEE--EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchh
Confidence            46778899  9999922  23667888877  999997652  2334456666667889999999999987543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.57  E-value=3.5e-16  Score=136.76  Aligned_cols=124  Identities=16%  Similarity=0.102  Sum_probs=79.3

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT  250 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v  250 (320)
                      ..++++++++.|    +. .++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. . ....+
T Consensus         9 ~~l~~~~ls~~y----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~~~-~-~~~~i   80 (214)
T 1sgw_A            9 SKLEIRDLSVGY----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS-TYLKPLKGEIIYNGVPIT-K-VKGKI   80 (214)
T ss_dssp             CEEEEEEEEEES----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEEGG-G-GGGGE
T ss_pred             ceEEEEEEEEEe----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEhh-h-hcCcE
Confidence            356677665544    33 567777765   9999999999999999999999 999999999999865422 1 12334


Q ss_pred             eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +.++|+...+  .++.+++..... .... .. .++   +.++++.+|+.+. ++++.+|||++
T Consensus        81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~-~~-~~~---~~~~l~~~gl~~~-~~~~~~LSgGq  138 (214)
T 1sgw_A           81 FFLPEEIIVPRKISVEDYLKAVASLYGVK-VN-KNE---IMDALESVEVLDL-KKKLGELSQGT  138 (214)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCC-CC-HHH---HHHHHHHTTCCCT-TSBGGGSCHHH
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHhcCCc-hH-HHH---HHHHHHHcCCCcC-CCChhhCCHHH
Confidence            4555543322  244454443211 1111 11 223   3344555666777 88999999964

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.57  E-value=1e-15  Score=136.77  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=77.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HEM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~~  245 (320)
                      +++++++++.        .+++++++.   |++++|+||||||||||+|+|+ |+++|+ |+|.+++.+..      ...
T Consensus         4 ~l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~-Gl~~p~-G~i~~~g~~~~~~~~~~~~~   73 (249)
T 2qi9_C            4 VMQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGK-GSIQFAGQPLEAWSATKLAL   73 (249)
T ss_dssp             EEEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT-TSSCCE-EEEEETTEEGGGSCHHHHHH
T ss_pred             EEEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCC-eEEEECCEECCcCCHHHHhc
Confidence            3555655433        355666664   9999999999999999999999 999999 99999864421      112


Q ss_pred             hcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+++++|.+.. +...++.+++..+......    .   +++.++++.+|+.++.++.+.+|||++.
T Consensus        74 ~i~~v~q~~~~-~~~~tv~e~l~~~~~~~~~----~---~~~~~~l~~~~l~~~~~~~~~~LSgGq~  132 (249)
T 2qi9_C           74 HRAYLSQQQTP-PFATPVWHYLTLHQHDKTR----T---ELLNDVAGALALDDKLGRSTNQLSGGEW  132 (249)
T ss_dssp             HEEEECSCCCC-CTTCBHHHHHHTTCSSTTC----H---HHHHHHHHHTTCGGGTTSBGGGCCHHHH
T ss_pred             eEEEECCCCcc-CCCCcHHHHHHHhhccCCc----H---HHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence            24455444332 1112555555543211111    2   2344555666778888999999999653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.56  E-value=5.2e-16  Score=139.06  Aligned_cols=121  Identities=18%  Similarity=0.085  Sum_probs=78.9

Q ss_pred             eeeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138        175 LLRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT  250 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v  250 (320)
                      .++++++++.|    + ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|...       ..++++
T Consensus         4 ~l~i~~l~~~y----~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~-------~~i~~v   71 (253)
T 2nq2_C            4 ALSVENLGFYY----QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL-GIHRPIQGKIEVY-------QSIGFV   71 (253)
T ss_dssp             EEEEEEEEEEE----TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHT-TSSCCSEEEEEEC-------SCEEEE
T ss_pred             eEEEeeEEEEe----CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEEe-------ccEEEE
Confidence            35666655444    3 34567777775   9999999999999999999999 9999999999831       124555


Q ss_pred             eeeeccccCCccccceeecCCCC--C---CCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        251 SSVGNDILGFDSVGNVVNKPEHG--S---LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       251 ~~~~~~~~~~~~~~~~v~~~~~~--~---~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +|.+..+. ..++.+++..+...  .   .....   ..+++.++++.+|+.++.++++++|||++
T Consensus        72 ~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGq  133 (253)
T 2nq2_C           72 PQFFSSPF-AYSVLDIVLMGRSTHINTFAKPKSH---DYQVAMQALDYLNLTHLAKREFTSLSGGQ  133 (253)
T ss_dssp             CSCCCCSS-CCBHHHHHHGGGGGGSCTTCCCCHH---HHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred             cCCCccCC-CCCHHHHHHHhhhhhcccccCCCHH---HHHHHHHHHHHcCChHHhcCChhhCCHHH
Confidence            54432221 22455555443211  1   01111   12344556666777888899999999964

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.56  E-value=1.7e-15  Score=134.70  Aligned_cols=104  Identities=18%  Similarity=0.163  Sum_probs=69.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccccCCccccceeecCCCCCCCHH
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWV  278 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~  278 (320)
                      ++++|+||||||||||+|+|+ |+++|++|+|.+++.+..    ....+|+++|.+.. +...++.+++..+... ....
T Consensus        25 e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l-~~~ltv~enl~~~~~~-~~~~  101 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIA-GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL-FPHLSVYRNIAYGLRN-VERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC-CTTSCHHHHHHTTCTT-SCHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCchhhCcEEEEcCCCcc-CCCCcHHHHHHHHHHH-cCCc
Confidence            889999999999999999999 999999999999864421    11224455444321 1122455555543321 1211


Q ss_pred             hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .   ..+++.++++.+|+.++.++++++|||++.
T Consensus       102 ~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk  132 (240)
T 2onk_A          102 E---RDRRVREMAEKLGIAHLLDRKPARLSGGER  132 (240)
T ss_dssp             H---HHHHHHHHHHTTTCTTTTTCCGGGSCHHHH
T ss_pred             h---HHHHHHHHHHHcCCHHHhcCChhhCCHHHH
Confidence            1   134455667777888889999999999653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.55  E-value=1.6e-15  Score=137.24  Aligned_cols=135  Identities=17%  Similarity=0.132  Sum_probs=82.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|... ....++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..   ......
T Consensus        16 ~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           16 LVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             eEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCCEEEECCEEcccCCHHHHhc
Confidence            57777776665321 013466666665   9999999999999999999999 999999999999864421   111112


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~  311 (320)
                      .++.++|+...| .++.+++.++......+....+.  ...+.++++.+  |+..+.++++.+|||++
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq  161 (271)
T 2ixe_A           94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQ  161 (271)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHH
T ss_pred             cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHH
Confidence            234444443222 35566665543221111221111  12233445444  66778889999999964

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.54  E-value=1e-14  Score=133.97  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=44.9

Q ss_pred             Ccchhh--ccCCCCccchhhhccceecCCCCc-h-hHHHHHHHHHHcCCCcEEEEeCCCCCChh
Q psy15138         23 IHERDD--DLPEASPADHSMLQSKVGANAGIV-G-MTKEHLGLALALSVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        23 gh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~   82 (320)
                      +|+||.  .=+-+.++|.+++  |++++++.. . ...+.+..++..++|+++|+||+|+.+..
T Consensus        65 i~er~~~l~r~~~~naD~vli--V~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~  126 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVII--VETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE  126 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEE--EECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred             eCChHHHHhHHHHHhcCEEEE--EEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc
Confidence            488888  2234788999988  999997653 2 33467777888899999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.53  E-value=9.6e-16  Score=137.11  Aligned_cols=129  Identities=20%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeeccccch----hh-
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFRHK----HE-  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~~~----~~-  244 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+  ++|++|+|.+++.+..    .. 
T Consensus         3 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~-Gl~~~~p~~G~I~~~g~~~~~~~~~~~   77 (250)
T 2d2e_A            3 QLEIRDLWASI----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILA-GDPEYTVERGEILLDGENILELSPDER   77 (250)
T ss_dssp             EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-TCTTCEEEEEEEEETTEECTTSCHHHH
T ss_pred             eEEEEeEEEEE----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCceEEEECCEECCCCCHHHH
Confidence            35666655444    445677777775   9999999999999999999999 98  7899999999864421    11 


Q ss_pred             --hhcCcceeeeccccCCccccceeecCCC---C-CCCHHhHHHHHHHHHHHhcccCC-cccccccccc-ccCCCC
Q psy15138        245 --MESGRTSSVGNDILGFDSVGNVVNKPEH---G-SLDWVKICERSAKVITFIDLAGH-ERYLKTTVFG-MTGHVP  312 (320)
Q Consensus       245 --~~~g~v~~~~~~~~~~~~~~~~v~~~~~---~-~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~-LSG~~~  312 (320)
                        ..+++++|.+..+.. .++.+++.....   . .....+   ..+++.++++.+|+ .++.++++++ |||++.
T Consensus        78 ~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqk  149 (250)
T 2d2e_A           78 ARKGLFLAFQYPVEVPG-VTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLDWDESYLSRYLNEGFSGGEK  149 (250)
T ss_dssp             HHTTBCCCCCCCC-CCS-CBHHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHTCCGGGGGSBTTCC----HH
T ss_pred             HhCcEEEeccCCccccC-CCHHHHHHHHHHhhccccCCHHH---HHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence              123455554332211 234444433210   1 111122   22344556666777 4778899998 999753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.52  E-value=1.4e-15  Score=139.66  Aligned_cols=132  Identities=17%  Similarity=0.147  Sum_probs=80.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|..   ...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ....+.
T Consensus        53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~-gl~~p~~G~I~i~G~~i~~~~~~~~r~  128 (306)
T 3nh6_A           53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLRS  128 (306)
T ss_dssp             CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHT-TSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred             eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHH-cCCCCCCcEEEECCEEcccCCHHHHhc
Confidence            4677777666632   24467777765   9999999999999999999999 999999999999865421   111223


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~  311 (320)
                      .++.++|+...| .++.+++.++... .......+..  ..+.++++..  |+.........+|||++
T Consensus       129 ~i~~v~Q~~~lf~~Tv~eNi~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq  195 (306)
T 3nh6_A          129 HIGVVPQDTVLFNDTIADNIRYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE  195 (306)
T ss_dssp             TEEEECSSCCCCSEEHHHHHHTTSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred             ceEEEecCCccCcccHHHHHHhhccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence            455555554444 3556666654322 1222211111  1111222211  44455566678999964

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.51  E-value=3.1e-15  Score=133.54  Aligned_cols=63  Identities=14%  Similarity=0.080  Sum_probs=49.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      -++++++++.|..  +...+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+
T Consensus         7 ~~~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~I~i~g~~   72 (247)
T 2ff7_A            7 DITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPENGQVLIDGHD   72 (247)
T ss_dssp             EEEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEE
T ss_pred             ceeEEEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEE
Confidence            3455655544410  124567777775   9999999999999999999999 9999999999998644

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.51  E-value=1.3e-14  Score=129.21  Aligned_cols=128  Identities=15%  Similarity=0.092  Sum_probs=75.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh---hhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH---EMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~---~~~~g~  249 (320)
                      ++++++++.|.   +...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...   ......
T Consensus         2 l~~~~l~~~y~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T 1mv5_A            2 LSARHVDFAYD---DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPTAGEITIDGQPIDNISLENWRSQ   77 (243)
T ss_dssp             EEEEEEEECSS---SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHT-TSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred             EEEEEEEEEeC---CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence            45566555552   223466666665   9999999999999999999999 9999999999998643211   111223


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccC--------CccccccccccccCCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAG--------HERYLKTTVFGMTGHV  311 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~g--------l~~~~~~~~~~LSG~~  311 (320)
                      ++.++|+...| .++.+++..+.......    +...++++.+++.+        +....+..+.+|||++
T Consensus        78 i~~v~q~~~l~~~tv~enl~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq  144 (243)
T 1mv5_A           78 IGFVSQDSAIMAGTIRENLTYGLEGDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ  144 (243)
T ss_dssp             CCEECCSSCCCCEEHHHHTTSCTTSCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred             EEEEcCCCccccccHHHHHhhhccCCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence            44444443322 24555554432111111    22334444444322        2223345678999964

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.47  E-value=8.4e-15  Score=131.89  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=75.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc--CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce-e
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL--EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS-S  252 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~-~  252 (320)
                      ++++++++.|........+++++++.  |++++|+||||||||||+|+|+ |++ |++|+|.+++.+.........++ .
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~-Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~   79 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAIS-GLL-PYSGNIFINGMEVRKIRNYIRYSTN   79 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHT-TSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHh-CCC-CCCcEEEECCEECcchHHhhheEEE
Confidence            34555554443210003455555544  9999999999999999999999 999 99999999764321100122233 3


Q ss_pred             eeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCC
Q psy15138        253 VGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHV  311 (320)
Q Consensus       253 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~  311 (320)
                      ++|+.....++.+++....... .  .   ..+++.++++.+|+. +..++++++|||++
T Consensus        80 v~Q~~~l~~tv~enl~~~~~~~-~--~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq  133 (263)
T 2pjz_A           80 LPEAYEIGVTVNDIVYLYEELK-G--L---DRDLFLEMLKALKLGEEILRRKLYKLSAGQ  133 (263)
T ss_dssp             CGGGSCTTSBHHHHHHHHHHHT-C--C---CHHHHHHHHHHTTCCGGGGGSBGGGSCHHH
T ss_pred             eCCCCccCCcHHHHHHHhhhhc-c--h---HHHHHHHHHHHcCCChhHhcCChhhCCHHH
Confidence            4443221223444443321000 0  0   112344555566777 88899999999964

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.46  E-value=6.7e-14  Score=128.50  Aligned_cols=122  Identities=19%  Similarity=0.250  Sum_probs=71.4

Q ss_pred             CCCccchhhhccceecCCCCch--hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccc
Q psy15138         32 EASPADHSMLQSKVGANAGIVG--MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCL  109 (320)
Q Consensus        32 ~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~  109 (320)
                      .++++|++++  |+++..|...  ...+.|..|+..++|+++|+||+||.+.+..++.++++.+.+...++.     +..
T Consensus        83 ~~anvD~v~~--V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-----v~~  155 (307)
T 1t9h_A           83 PICNVDQAVL--VFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-----VYL  155 (307)
T ss_dssp             TEECCCEEEE--EEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-----EEE
T ss_pred             HHHhCCEEEE--EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe-----EEE
Confidence            4899999999  9999977654  444677888889999999999999987754222334444432211221     111


Q ss_pred             cCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeee
Q psy15138        110 ISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQY  189 (320)
Q Consensus       110 ~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
                      .+..              ...+..+                                                       
T Consensus       156 ~sa~--------------~~~g~~~-------------------------------------------------------  166 (307)
T 1t9h_A          156 TSSK--------------DQDSLAD-------------------------------------------------------  166 (307)
T ss_dssp             CCHH--------------HHTTCTT-------------------------------------------------------
T ss_pred             EecC--------------CCCCHHH-------------------------------------------------------
Confidence            1100              0000000                                                       


Q ss_pred             cceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        190 LLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       190 ~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                       ...     ...|++++|+||||+|||||+|+|. |..+|..|.+..
T Consensus       167 -L~~-----~~~G~~~~lvG~sG~GKSTLln~L~-g~~~~~~G~I~~  206 (307)
T 1t9h_A          167 -IIP-----HFQDKTTVFAGQSGVGKSSLLNAIS-PELGLRTNEISE  206 (307)
T ss_dssp             -TGG-----GGTTSEEEEEESHHHHHHHHHHHHC-C-----------
T ss_pred             -HHh-----hcCCCEEEEECCCCCCHHHHHHHhc-ccccccccceee
Confidence             000     0137789999999999999999999 999999999987

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.46  E-value=1.4e-14  Score=128.47  Aligned_cols=60  Identities=32%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ++++++++.|..  ....+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++
T Consensus         4 l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g   66 (237)
T 2cbz_A            4 ITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL-AEMDKVEGHVAIKG   66 (237)
T ss_dssp             EEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TCSEEEEEEEEECS
T ss_pred             EEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECC
Confidence            566666544421  023456666665   9999999999999999999999 99999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.46  E-value=1.3e-14  Score=137.52  Aligned_cols=125  Identities=15%  Similarity=0.131  Sum_probs=81.1

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhc
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMES  247 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~  247 (320)
                      ..++++++++.|..  +...+++++++.   |++++|+||||||||||||+|+ |+++ ++|+|.+++.+..   .....
T Consensus        18 ~~i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~-~~G~I~i~G~~i~~~~~~~~r   93 (390)
T 3gd7_A           18 GQMTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLN-TEGEIQIDGVSWDSITLEQWR   93 (390)
T ss_dssp             CCEEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH-TCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred             CeEEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHh-CCCC-CCeEEEECCEECCcCChHHHh
Confidence            34677766655521  234567777765   9999999999999999999999 9998 8999999865421   11112


Q ss_pred             CcceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccccc-----------ccCCC
Q psy15138        248 GRTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFG-----------MTGHV  311 (320)
Q Consensus       248 g~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~-----------LSG~~  311 (320)
                      ..++.++|+...| .++.+++...  ....    .   +++.++++.+++.++.+++|.+           |||++
T Consensus        94 r~ig~v~Q~~~lf~~tv~enl~~~--~~~~----~---~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq  160 (390)
T 3gd7_A           94 KAFGVIPQKVFIFSGTFRKNLDPN--AAHS----D---QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH  160 (390)
T ss_dssp             HTEEEESCCCCCCSEEHHHHHCTT--CCSC----H---HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred             CCEEEEcCCcccCccCHHHHhhhc--cccC----H---HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence            2345555554443 2444444321  1111    1   2334556667778888999998           99964

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.44  E-value=3e-14  Score=128.58  Aligned_cols=129  Identities=17%  Similarity=0.099  Sum_probs=77.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeeccccch----hhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFRHK----HEM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~~~----~~~  245 (320)
                      .++++++++.|    +...++++++|.   |++++|+||||||||||+|+|+ |+  ++|++|+|.+++.+..    ...
T Consensus        20 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~-Gl~~~~p~~G~I~~~g~~i~~~~~~~~   94 (267)
T 2zu0_C           20 MLSIKDLHVSV----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLA-GREDYEVTGGTVEFKGKDLLALSPEDR   94 (267)
T ss_dssp             CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            56777766544    345567777775   9999999999999999999999 99  4689999999865421    111


Q ss_pred             hcCcceeeeccccCCc--cccceeecCC-------C-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccc-cccCCC
Q psy15138        246 ESGRTSSVGNDILGFD--SVGNVVNKPE-------H-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVF-GMTGHV  311 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~~--~~~~~v~~~~-------~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~-~LSG~~  311 (320)
                      ....++.++|+...+.  ++.+++....       . ......+.   .+++.++++.+|+. ++.++++. +|||++
T Consensus        95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq  169 (267)
T 2zu0_C           95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF---QDLMEEKIALLKMPEDLLTRSVNVGFSGGE  169 (267)
T ss_dssp             HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHH---HHHHHHHHHHTTCCTTTTTSBTTTTCCHHH
T ss_pred             hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHH---HHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence            1112344444432221  2222222110       0 01122222   23444566667775 56788887 599965

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.42  E-value=5.5e-14  Score=124.00  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .++++++++.|..  +...+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|.+++
T Consensus         6 ~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g   69 (229)
T 2pze_A            6 EVVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM-GELEPSEGKIKHSG   69 (229)
T ss_dssp             EEEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEECS
T ss_pred             eEEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCcCCccEEEECC
Confidence            4677777666531  123466666665   9999999999999999999999 99999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.40  E-value=8.5e-14  Score=125.12  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|.... ...+++++++.   |++++|+||||||||||+++|+ |+++| +|+|.+++.+..   ......
T Consensus        17 ~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~-~G~I~i~g~~i~~~~~~~~~~   93 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDA-EGDIKIGGKNVNKYNRNSIRS   93 (260)
T ss_dssp             CEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCC-EEEEEETTEEGGGBCHHHHHT
T ss_pred             eEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHh-ccCCC-CeEEEECCEEhhhcCHHHHhc
Confidence            467777766663210 12456666665   9999999999999999999999 99987 899999864421   111123


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .++.+++.++
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~  116 (260)
T 2ghi_A           94 IIGIVPQDTILFNETIKYNILYG  116 (260)
T ss_dssp             TEEEECSSCCCCSEEHHHHHHTT
T ss_pred             cEEEEcCCCcccccCHHHHHhcc
Confidence            445555554333 2455555443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.40  E-value=1.2e-13  Score=137.63  Aligned_cols=93  Identities=18%  Similarity=0.203  Sum_probs=64.2

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ....+.
T Consensus       341 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~-g~~~p~~G~i~~~g~~~~~~~~~~~~~  417 (582)
T 3b5x_A          341 EVDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVDSGSICLDGHDVRDYKLTNLRR  417 (582)
T ss_pred             eEEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCCEEEECCEEhhhCCHHHHhc
Confidence            35666665555321  14567777775   9999999999999999999999 999999999999865421   112234


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .++.+++..+
T Consensus       418 ~i~~v~Q~~~l~~~tv~eni~~~  440 (582)
T 3b5x_A          418 HFALVSQNVHLFNDTIANNIAYA  440 (582)
T ss_pred             CeEEEcCCCccccccHHHHHhcc
Confidence            455666655443 3556666554

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.40  E-value=4.1e-13  Score=126.65  Aligned_cols=111  Identities=12%  Similarity=0.038  Sum_probs=88.1

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCc-EEEEe-CCCCCChhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPV-FVVVT-KIDMCPPNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~-~v~ln-k~Dl~~~~~le~~   87 (320)
                      .+..+.|+|+|||++|+  |+.+...+|.+++  |++ ++|+++||++|+.+++.+++|. ++++| |+|+ +.+++++.
T Consensus        58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ail--Vvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~  133 (370)
T 2elf_A           58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVL--CIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDEL  133 (370)
T ss_dssp             SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEE--EEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHH
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHHHCCEEEE--EEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHH
Confidence            45679999999999998  8999999999999  999 9999999999999999999987 88999 9999 88888888


Q ss_pred             HHHHHHhhcCCCccccCcccc--ccCCc---hhHHHHHHHHHHHH
Q psy15138         88 LKLLVRILKSPGCRKVPVMNC--LISPT---EEQFDLLQKKIKSL  127 (320)
Q Consensus        88 l~~~~~~l~~~~~~~i~~kl~--~~~gn---yd~~~~l~~q~~~~  127 (320)
                      .+++.+.+.......++. +.  .+..+   ++..+++.+.+.+.
T Consensus       134 ~~~i~~~l~~~~~~~~~i-i~~~~SA~~~~~g~gi~~L~~~l~~~  177 (370)
T 2elf_A          134 KAKLKVITSGTVLQDWEC-ISLNTNKSAKNPFEGVDELKARINEV  177 (370)
T ss_dssp             HHHHHHHTTTSTTTTCEE-EECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCceEE-EecccccccCcCCCCHHHHHHHHHhh
Confidence            888888776543333322 11  23345   66777776665544

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.39  E-value=3.6e-13  Score=131.24  Aligned_cols=112  Identities=21%  Similarity=0.223  Sum_probs=91.1

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.|+|+|||++|.  |..++..+|.+++  |+++++|+++||++|+.+++.+++|.++++||+|+.+.++++...+++
T Consensus        73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~il--Vvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l  150 (482)
T 1wb1_A           73 YRITLVDAPGHADLIRAVVSAADIIDLALI--VVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIM  150 (482)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEE--EEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEE--EEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHH
Confidence            468999999999999  8999999999999  999999999999999999999999999999999999988888888888


Q ss_pred             HHhhcCC-CccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138         92 VRILKSP-GCRKVPVMNCLISPTEEQFDLLQKKIKSLI  128 (320)
Q Consensus        92 ~~~l~~~-~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~  128 (320)
                      ...+... .+...+. +..+.-+.+.++++.+.+...+
T Consensus       151 ~~~l~~~~~~~~~~i-i~vSA~~g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          151 KSILQSTHNLKNSSI-IPISAKTGFGVDELKNLIITTL  187 (482)
T ss_dssp             HHHHHHSSSGGGCCE-EECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccceE-EEEECcCCCCHHHHHHHHHHhh
Confidence            8876654 3433322 1123355667777777766654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.38  E-value=6.6e-13  Score=126.85  Aligned_cols=111  Identities=19%  Similarity=0.232  Sum_probs=87.4

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ..+.|+|+|||++|.  |+.++..+|.+++  |++|++|. ++||++|+.+++.+++ |.++++||+|+.+.++.++..+
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~il--Vvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAIL--VIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEE--EEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEE--EEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHH
Confidence            468999999999999  9999999999999  99999998 9999999999999999 6778899999999888777777


Q ss_pred             HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ++.+.+.......++. +..+..+.+.++++.+.+...
T Consensus       161 ~i~~~l~~~~~~~~~~-i~vSA~~g~gi~~L~~~l~~~  197 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPI-IPISALHGANIDVLVKAIEDF  197 (410)
T ss_dssp             HHHHHHTTSTTTTCCE-EECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCCCeE-EEeeCCCCCCHHHHHHHHHHh
Confidence            8877766432222221 112335556677777766654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.38  E-value=2.7e-13  Score=133.77  Aligned_cols=96  Identities=15%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCCCHHhH
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKI  280 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  280 (320)
                      .|++++|+||||||||||+|+|+ |+++|++|+|.+.       ..+++++|.......+ ++.+++....     ....
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~-Gl~~p~~G~i~~~-------~~i~~v~Q~~~~~~~~-tv~~~~~~~~-----~~~~  376 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLA-GVEEPTEGKIEWD-------LTVAYKPQYIKADYEG-TVYELLSKID-----ASKL  376 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHH-TSSCCSBCCCCCC-------CCEEEECSSCCCCCSS-BHHHHHHHHH-----HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEEC-------ceEEEEecCCcCCCCC-cHHHHHHhhh-----ccCC
Confidence            39999999999999999999999 9999999999862       1245555543221111 2222221100     0000


Q ss_pred             HHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        281 CERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       281 ~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                       ...+.+.++++.+|+.+..++++..|||++
T Consensus       377 -~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe  406 (538)
T 1yqt_A          377 -NSNFYKTELLKPLGIIDLYDREVNELSGGE  406 (538)
T ss_dssp             -TCHHHHHHTTTTTTCGGGTTSBGGGCCHHH
T ss_pred             -CHHHHHHHHHHHcCChhhhcCChhhCCHHH
Confidence             012345567778888888999999999964

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.38  E-value=8.1e-14  Score=139.35  Aligned_cols=92  Identities=17%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|..   ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ....+.
T Consensus       354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~-g~~~p~~G~i~~~g~~i~~~~~~~~r~  429 (598)
T 3qf4_B          354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDRGQILVDGIDIRKIKRSSLRS  429 (598)
T ss_dssp             CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHT-TSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence            3667777776642   23467777765   9999999999999999999999 999999999999865421   111223


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .++.+++..+
T Consensus       430 ~i~~v~Q~~~lf~~tv~eni~~~  452 (598)
T 3qf4_B          430 SIGIVLQDTILFSTTVKENLKYG  452 (598)
T ss_dssp             HEEEECTTCCCCSSBHHHHHHSS
T ss_pred             ceEEEeCCCccccccHHHHHhcC
Confidence            455555555444 3556666554

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.38  E-value=1.2e-13  Score=137.64  Aligned_cols=93  Identities=22%  Similarity=0.236  Sum_probs=63.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|...  ...+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ....+.
T Consensus       341 ~i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~-g~~~p~~G~i~~~g~~~~~~~~~~~~~  417 (582)
T 3b60_A          341 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLASLRN  417 (582)
T ss_dssp             CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT-TTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred             cEEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh-hccCCCCCeEEECCEEccccCHHHHHh
Confidence            35666666655321  13466666665   9999999999999999999999 999999999999865421   111223


Q ss_pred             cceeeeccccCC-ccccceeecC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKP  270 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~  270 (320)
                      .++.++|+...| .++.+++..+
T Consensus       418 ~i~~v~Q~~~l~~~tv~eni~~~  440 (582)
T 3b60_A          418 QVALVSQNVHLFNDTVANNIAYA  440 (582)
T ss_dssp             TEEEECSSCCCCSSBHHHHHHTT
T ss_pred             hCeEEccCCcCCCCCHHHHHhcc
Confidence            455555554443 3566666654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.37  E-value=7.7e-13  Score=126.29  Aligned_cols=111  Identities=24%  Similarity=0.290  Sum_probs=81.7

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ..+.|+|+|||++|.  |+.++..+|.+++  |+++++|. ++||++|+.+++.+++ |+++++||+|+.+.++.++..+
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~il--Vvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~  158 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAIL--VIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYE  158 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEE--EEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEE--EEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHH
Confidence            468999999999999  9999999999999  99999998 8999999999999999 6789999999987766555556


Q ss_pred             HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ++.+.+.......++. +..+..+.+.++++.+.+...
T Consensus       159 ~i~~~l~~~~~~~~~~-i~vSA~~g~gi~~L~~~l~~~  195 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPI-IPISAHHEANIDVLLKAIQDF  195 (408)
T ss_dssp             HHHHHHTTSTTTTCCE-EEC------CHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCeE-EEeeCCCCCCHHHHHHHHHHh
Confidence            6666655422222221 112335556677777766654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.35  E-value=1.4e-13  Score=137.04  Aligned_cols=93  Identities=18%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++++.|...  ...+++++++.   |++++|+||||||||||+++|. |+++|++|+|.+++.+..   ....+..
T Consensus       340 i~~~~v~~~y~~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~-g~~~p~~G~i~~~g~~~~~~~~~~~r~~  416 (578)
T 4a82_A          340 IDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQ  416 (578)
T ss_dssp             EEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT-TSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred             EEEEEEEEEcCCC--CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh-cCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence            5666666655321  23456666665   9999999999999999999999 999999999999865421   1112234


Q ss_pred             ceeeeccccCC-ccccceeecCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      ++.++|+...| .++.+++..+.
T Consensus       417 i~~v~Q~~~l~~~tv~eni~~~~  439 (578)
T 4a82_A          417 IGLVQQDNILFSDTVKENILLGR  439 (578)
T ss_dssp             EEEECSSCCCCSSBHHHHHGGGC
T ss_pred             eEEEeCCCccCcccHHHHHhcCC
Confidence            55556655444 35666666543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.35  E-value=1.3e-12  Score=124.46  Aligned_cols=111  Identities=21%  Similarity=0.204  Sum_probs=89.9

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ..+.|+|+|||++|.  |+.++..+|.+++  |+++++|. ++++++|+.+++.+++ |.++++||+|+.+.++.++..+
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~il--Vvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~  152 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAIL--VVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYR  152 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEE--EEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHH
Confidence            468899999999999  8999999999999  99999998 9999999999999999 7888999999999988888888


Q ss_pred             HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ++.+.+.......++. +..+..+.+..+++.+.+...
T Consensus       153 ~i~~~l~~~~~~~~~i-i~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPI-IPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             HHHHHHTTSTTTTCCE-EECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCEE-EEEECCCCcChHHHHHHHHHh
Confidence            8888776543333322 113345666777777766654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.34  E-value=7.3e-13  Score=130.58  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC--CccccceeecCCCCCCCHH
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG--FDSVGNVVNKPEHGSLDWV  278 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~--~~~~~~~v~~~~~~~~~~~  278 (320)
                      .|++++|+||||||||||+++|+ |+++|++|+|.+...      .+++   .+|....  ..++.+++...........
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~~~------~i~~---~~q~~~~~~~~tv~~~l~~~~~~~~~~~  362 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILV-GEITADEGSVTPEKQ------ILSY---KPQRIFPNYDGTVQQYLENASKDALSTS  362 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHT-TSSCCSBCCEESSCC------CEEE---ECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCe------eeEe---echhcccccCCCHHHHHHHhhhhccchh
Confidence            39999999999999999999999 999999999986421      1233   3333221  1223333322111111110


Q ss_pred             hHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                           ...+.++++.+++.+..++++.+|||++
T Consensus       363 -----~~~~~~~l~~~~l~~~~~~~~~~LSGGq  390 (538)
T 3ozx_A          363 -----SWFFEEVTKRLNLHRLLESNVNDLSGGE  390 (538)
T ss_dssp             -----SHHHHHTTTTTTGGGCTTSBGGGCCHHH
T ss_pred             -----HHHHHHHHHHcCCHHHhcCChhhCCHHH
Confidence                 1223456777788889999999999964

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.33  E-value=9.1e-13  Score=126.99  Aligned_cols=87  Identities=28%  Similarity=0.320  Sum_probs=73.0

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCCCh
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMCPP   81 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~   81 (320)
                      ....+.|+|+|||++|.  |+.++..+|.+++  ||+|++|++       +||++|+.+++.+++| +++++||+|+...
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~il--VVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVL--VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEE--EEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence            44568999999999999  9999999999999  999999987       7999999999999997 8899999999754


Q ss_pred             h----HHHHHHHHHHHhhcCCCc
Q psy15138         82 N----VLQDTLKLLVRILKSPGC  100 (320)
Q Consensus        82 ~----~le~~l~~~~~~l~~~~~  100 (320)
                      +    .+++..+++...++..++
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~  193 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGF  193 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcc
Confidence            4    455566666666554444

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.32  E-value=2.4e-13  Score=135.58  Aligned_cols=133  Identities=18%  Similarity=0.202  Sum_probs=82.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      .++++++++.|..  ....+++++++.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..   ....+.
T Consensus       341 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-g~~~~~~G~i~i~g~~i~~~~~~~~r~  417 (587)
T 3qf4_A          341 SVSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLIDPERGRVEVDELDVRTVKLKDLRG  417 (587)
T ss_dssp             CEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTT-TSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred             cEEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCccCCCcEEEECCEEcccCCHHHHHh
Confidence            3566666666632  123466666665   9999999999999999999999 999999999999865421   111233


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~  311 (320)
                      .++.++|+...| .++.+++..+... ....+..+..  ..+.++++..  |+....+..+.+|||++
T Consensus       418 ~i~~v~Q~~~lf~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq  484 (587)
T 3qf4_A          418 HISAVPQETVLFSGTIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ  484 (587)
T ss_dssp             HEEEECSSCCCCSEEHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred             heEEECCCCcCcCccHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence            455566655544 3556666554321 1222221111  1112222221  55666778889999965

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.31  E-value=3.3e-12  Score=121.53  Aligned_cols=87  Identities=26%  Similarity=0.258  Sum_probs=74.0

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCC-ChhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMC-PPNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-~~~~le~~   87 (320)
                      ....+.|+|+|||++|.  |..+...+|.+++  |+++++|.++||++|+.+++.+++| .++++||+|+. +.+.++..
T Consensus        64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~il--Vvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~  141 (397)
T 1d2e_A           64 AARHYAHTDCPGHADYVKNMITGTAPLDGCIL--VVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELV  141 (397)
T ss_dssp             SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHH
Confidence            34678999999999999  8999999999999  9999999999999999999999998 57899999998 45666666


Q ss_pred             HHHHHHhhcCCCc
Q psy15138         88 LKLLVRILKSPGC  100 (320)
Q Consensus        88 l~~~~~~l~~~~~  100 (320)
                      .+++.+.+...++
T Consensus       142 ~~~~~~~l~~~~~  154 (397)
T 1d2e_A          142 ELEIRELLTEFGY  154 (397)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCC
Confidence            6677776654433

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.29  E-value=6.6e-13  Score=121.08  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .++++++++.+      ..++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++
T Consensus        40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g   99 (290)
T 2bbs_A           40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM-GELEPSEGKIKHSG   99 (290)
T ss_dssp             ----------C------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHT-TSSCEEEEEEECCS
T ss_pred             eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECC
Confidence            35555555421      3456666664   9999999999999999999999 99999999999864

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.29  E-value=2.3e-12  Score=125.16  Aligned_cols=83  Identities=25%  Similarity=0.300  Sum_probs=62.4

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCCC--
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMCP--   80 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--   80 (320)
                      ...+.|+|+|||++|.  |+.++..+|.+++  ||++++|.+       +||++|+.+++.+++| ++|++||+|+.+  
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~il--VvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVL--VISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEE--EEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEE--EEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence            3458899999999999  9999999999999  999999985       7999999999999997 889999999964  


Q ss_pred             --hhHHHHHHHHHHHhhcC
Q psy15138         81 --PNVLQDTLKLLVRILKS   97 (320)
Q Consensus        81 --~~~le~~l~~~~~~l~~   97 (320)
                        .++++...+++...+..
T Consensus       198 ~~~~~~~~i~~e~~~~l~~  216 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRR  216 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence              46677776777666544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.26  E-value=1.5e-12  Score=135.20  Aligned_cols=159  Identities=20%  Similarity=0.194  Sum_probs=100.5

Q ss_pred             chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHH-hhc--C-------CCcccc----CccccccCC
Q psy15138         52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVR-ILK--S-------PGCRKV----PVMNCLISP  112 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~-~l~--~-------~~~~~i----~~kl~~~~g  112 (320)
                      .+..|.++.||+++-. |.++++    |.+|..+..|+.+++.+ .+ ++.  +       ..|+++    .+++..+.|
T Consensus       550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G  628 (986)
T 2iw3_A          550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKG  628 (986)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEES
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCC
Confidence            4677889999999999 788888    99999999999988877 22 111  1       224433    445545678


Q ss_pred             chhHHHHHHHHHHHHHHcCcccceecccccCCC--CC-CCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeee
Q psy15138        113 TEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDG--GE-NGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQY  189 (320)
Q Consensus       113 nyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~--~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
                      +++.+......         ....+.+......  .. .+...              ........+++++++++.|... 
T Consensus       629 ~~~e~~~~~~~---------~~~~~~l~~~~~~~~~p~~~~~~--------------~~~~~~~~mL~v~nLs~~Y~g~-  684 (986)
T 2iw3_A          629 NFTEFVKKCPA---------AKAYEELSNTDLEFKFPEPGYLE--------------GVKTKQKAIVKVTNMEFQYPGT-  684 (986)
T ss_dssp             CHHHHHHHCGG---------GGGSSSTTTCCCCCCCCCCCCCT--------------TCCSTTSEEEEEEEEEECCTTC-
T ss_pred             CHHHHHhhhHH---------HHHHHhhhhhhhhcccccccccc--------------ccccCCCceEEEEeeEEEeCCC-
Confidence            88776532111         0111222110000  00 00000              0000112467888877665321 


Q ss_pred             cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                       ...+++++++.   |++++|+||||||||||+|+|+ |+++|++|+|+++
T Consensus       685 -~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLa-Gll~P~sG~I~~~  733 (986)
T 2iw3_A          685 -SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLT-GELLPTSGEVYTH  733 (986)
T ss_dssp             -SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHT-TSSCCSEEEEEEC
T ss_pred             -CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEc
Confidence             13456666665   9999999999999999999999 9999999999885

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.25  E-value=1e-11  Score=118.36  Aligned_cols=86  Identities=27%  Similarity=0.304  Sum_probs=73.0

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCC-ChhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMC-PPNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-~~~~le~~   87 (320)
                      ....+.|+|+|||++|.  |..+...+|.+++  |+++++|.++++++|+.+++.+++| +++++||+|+. +.+.++..
T Consensus        73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~il--Vvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~  150 (405)
T 2c78_A           73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAIL--VVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLV  150 (405)
T ss_dssp             SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEE--EEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHH
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHHHCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHH
Confidence            34568999999999999  8888999999999  9999999999999999999999998 77899999998 55666666


Q ss_pred             HHHHHHhhcCCC
Q psy15138         88 LKLLVRILKSPG   99 (320)
Q Consensus        88 l~~~~~~l~~~~   99 (320)
                      .+++...+...+
T Consensus       151 ~~~~~~~l~~~~  162 (405)
T 2c78_A          151 EMEVRDLLNQYE  162 (405)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            666766655433

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.23  E-value=3.4e-12  Score=127.25  Aligned_cols=85  Identities=26%  Similarity=0.301  Sum_probs=65.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCCC-cEEEEeCCCCCC--h
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSVP-VFVVVTKIDMCP--P   81 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~   81 (320)
                      ..+.|+|+|||++|+  |+.++..+|.++|  ||++++|.       ++||++|+.+++.+++| +++++||+|+..  .
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alL--VVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~  332 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVL--VVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE  332 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCS--EEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEE--EEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence            568899999999999  9999999999999  99999854       89999999999999996 788999999964  7


Q ss_pred             hHHHHHHHHHHHhh-cCCCc
Q psy15138         82 NVLQDTLKLLVRIL-KSPGC  100 (320)
Q Consensus        82 ~~le~~l~~~~~~l-~~~~~  100 (320)
                      ++++...+++...+ +..++
T Consensus       333 ~~~~~i~~el~~~l~~~~g~  352 (592)
T 3mca_A          333 DRFQEIKNIVSDFLIKMVGF  352 (592)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHHHHHhhCC
Confidence            88888888888887 54444

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.21  E-value=1.2e-11  Score=119.11  Aligned_cols=86  Identities=24%  Similarity=0.374  Sum_probs=74.1

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCC-CcEEEEeCCCCCC-
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSV-PVFVVVTKIDMCP-   80 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~-   80 (320)
                      ....+.|+|+|||++|.  |..+...+|.+++  |+++++|       +++|+++|+.+++.+++ |+++++||+|+.+ 
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~il--VvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAIL--VVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEE--EEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEE--EEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            34568999999999999  8999999999999  9999999       89999999999999999 5788999999976 


Q ss_pred             ---hhHHHHHHHHHHHhhcCCC
Q psy15138         81 ---PNVLQDTLKLLVRILKSPG   99 (320)
Q Consensus        81 ---~~~le~~l~~~~~~l~~~~   99 (320)
                         +++++...+++...+...+
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~  181 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYG  181 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHcC
Confidence               5667777777777765433

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.21  E-value=9.6e-12  Score=119.66  Aligned_cols=85  Identities=20%  Similarity=0.244  Sum_probs=72.7

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC--hhHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP--PNVLQDT   87 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~~~le~~   87 (320)
                      ...+.|+|+|||++|.  |..+...+|.+++  |+++++|+++++++|+.+++.+++| +++++||+|+.+  ++++++.
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~il--VvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i  180 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAII--LVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI  180 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence            3458899999999998  8888999999999  9999999999999999999999995 788899999975  5667767


Q ss_pred             HHHHHHhhcCCC
Q psy15138         88 LKLLVRILKSPG   99 (320)
Q Consensus        88 l~~~~~~l~~~~   99 (320)
                      .+++...+...+
T Consensus       181 ~~~~~~~~~~~g  192 (434)
T 1zun_B          181 KADYLKFAEGIA  192 (434)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC
Confidence            777777655433

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.21  E-value=4e-12  Score=137.28  Aligned_cols=95  Identities=16%  Similarity=0.081  Sum_probs=71.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|.... ..++++++++.   |+++|||||||||||||+++|. |+++|++|+|.+++.+.   .....+.
T Consensus      1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE-RFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp             CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT-TSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred             eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHh-cCccCCCCEEEECCEEhhhCCHHHHHh
Confidence            467888877774321 23456666665   9999999999999999999999 99999999999986552   2233456


Q ss_pred             cceeeeccccCC-ccccceeecCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      .++.++|++..| .+..+|+.++.
T Consensus      1154 ~i~~V~Qdp~LF~gTIreNI~~gl 1177 (1321)
T 4f4c_A         1154 QIAIVSQEPTLFDCSIAENIIYGL 1177 (1321)
T ss_dssp             TEEEECSSCCCCSEEHHHHHSSSS
T ss_pred             heEEECCCCEeeCccHHHHHhccC
Confidence            788888888776 46677776653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.20  E-value=6e-12  Score=121.91  Aligned_cols=84  Identities=25%  Similarity=0.309  Sum_probs=72.8

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-------hHHHHHHHHHHcCCC-cEEEEeCCCCC--
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-------MTKEHLGLALALSVP-VFVVVTKIDMC--   79 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-------~t~~~l~l~~~l~i~-~~v~lnk~Dl~--   79 (320)
                      ....+.|+|+|||++|.  |+.+...+|.+++  |+++++|.++       |+++|+.+++.+++| +++++||+|+.  
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~il--Vvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAIL--IIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEE--EEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEE--EEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccC
Confidence            44568999999999999  9999999999999  9999998877       999999999999997 78889999997  


Q ss_pred             ChhHHHHHHHHHHHhhcC
Q psy15138         80 PPNVLQDTLKLLVRILKS   97 (320)
Q Consensus        80 ~~~~le~~l~~~~~~l~~   97 (320)
                      +.++++...+++...+..
T Consensus       161 ~~~~~~~i~~~~~~~l~~  178 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKK  178 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            467777777777766554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.20  E-value=4.8e-12  Score=126.38  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=61.8

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCCCHHhH
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKI  280 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  280 (320)
                      .|++++|+||||||||||+|+|+ |+++|++|+|.+.       ..+++++|.......+ ++.+++....     ....
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~-Gl~~p~~G~I~~~-------~~i~~v~Q~~~~~~~~-tv~e~~~~~~-----~~~~  446 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLA-GVEEPTEGKVEWD-------LTVAYKPQYIKAEYEG-TVYELLSKID-----SSKL  446 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHH-TSSCCSBSCCCCC-------CCEEEECSSCCCCCSS-BHHHHHHHHH-----HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEEe-------eEEEEEecCccCCCCC-cHHHHHHhhh-----ccCC
Confidence            39999999999999999999999 9999999999862       1245555443221111 2222222110     0000


Q ss_pred             HHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        281 CERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       281 ~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                       .....+.++++.+|+.+..++++.+|||++
T Consensus       447 -~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe  476 (607)
T 3bk7_A          447 -NSNFYKTELLKPLGIIDLYDRNVEDLSGGE  476 (607)
T ss_dssp             -HCHHHHHHTHHHHTCTTTTTSBGGGCCHHH
T ss_pred             -CHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence             111234455566677788899999999964

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.19  E-value=4.5e-11  Score=125.24  Aligned_cols=87  Identities=22%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQDT   87 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~~   87 (320)
                      ....+.|+|+|||++|.  |+.+...+|.+++  ||++++|.++||++|+.+++.+++| +++++||+|+.+ .++++..
T Consensus       357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aIL--VVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i  434 (1289)
T 3avx_A          357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELV  434 (1289)
T ss_dssp             SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEE--EEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHH
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHhhCCEEEE--EEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHH
Confidence            34568999999999999  8999999999999  9999999999999999999999998 678899999984 5566666


Q ss_pred             HHHHHHhhcCCCc
Q psy15138         88 LKLLVRILKSPGC  100 (320)
Q Consensus        88 l~~~~~~l~~~~~  100 (320)
                      .+++...+...++
T Consensus       435 ~eEi~elLk~~G~  447 (1289)
T 3avx_A          435 EMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhccc
Confidence            6677776654433

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.18  E-value=1.1e-11  Score=133.70  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=66.4

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++++.|... ....+++++++.   |+++||+||||||||||+++|. |+++|++|+|.+++.+..   ....+..
T Consensus      1031 i~~~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~-g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A         1031 VQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp             EEEEEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHT-TSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred             EEEEEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence            5666666666421 123577888876   9999999999999999999999 999999999999865421   1222345


Q ss_pred             ceeeeccccCC-ccccceeecCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      ++.++|+...| .++.+++..+.
T Consensus      1109 i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A         1109 LGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp             CEEEESSCCCCSSBHHHHHTCCC
T ss_pred             eEEECCCCccccccHHHHHhccC
Confidence            66666666544 35566665543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.18  E-value=5e-12  Score=136.57  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=70.2

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|... +...+++++++.   |+.+||+||||||||||+++|. |+++|.+|+|.+++.+.   .....+.
T Consensus       415 ~I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~-~~~~~~~G~I~idG~~i~~~~~~~lr~  492 (1321)
T 4f4c_A          415 DITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL-RYYDVLKGKITIDGVDVRDINLEFLRK  492 (1321)
T ss_dssp             CEEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHT-TSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred             cEEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhc-cccccccCcccCCCccchhccHHHHhh
Confidence            36777777777432 123456666664   9999999999999999999999 99999999999986542   2223345


Q ss_pred             cceeeeccccCC-ccccceeecCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      .++.++|+.+.| .+..+|+.++.
T Consensus       493 ~i~~v~Q~~~Lf~~TI~eNI~~g~  516 (1321)
T 4f4c_A          493 NVAVVSQEPALFNCTIEENISLGK  516 (1321)
T ss_dssp             HEEEECSSCCCCSEEHHHHHHTTC
T ss_pred             cccccCCcceeeCCchhHHHhhhc
Confidence            677777777776 56778887654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.17  E-value=1.5e-11  Score=119.97  Aligned_cols=83  Identities=22%  Similarity=0.277  Sum_probs=70.8

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCC-CcEEEEeCCCCCC-
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSV-PVFVVVTKIDMCP-   80 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~-   80 (320)
                      ....+.|+|+|||++|.  |..+...+|.+++  |+++++|       +.+++++|+.+++.+++ |+++++||+|+.+ 
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~ll--VvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAIL--CVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEE--EEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEE--EEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc
Confidence            44568999999999999  8899999999999  9999998       67899999999999999 5888999999976 


Q ss_pred             -hhHHHHHHHHHHHhhc
Q psy15138         81 -PNVLQDTLKLLVRILK   96 (320)
Q Consensus        81 -~~~le~~l~~~~~~l~   96 (320)
                       .+.+++..+++...+.
T Consensus       187 ~~~~~~~i~~~~~~~l~  203 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLV  203 (483)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence             6667777777766654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.14  E-value=7.8e-12  Score=134.69  Aligned_cols=134  Identities=13%  Similarity=0.112  Sum_probs=79.2

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~  249 (320)
                      ++++++++.|... ....+++++++.   |++++|+||||||||||+++|. |+++|++|+|.+++.+..   ....+..
T Consensus       388 i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~-g~~~~~~G~i~i~g~~i~~~~~~~~r~~  465 (1284)
T 3g5u_A          388 LEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPLDGMVSIDGQDIRTINVRYLREI  465 (1284)
T ss_dssp             EEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTT-TSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             EEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence            5666666665321 113466777665   9999999999999999999999 999999999999865421   1112233


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHH--HHHHhccc--CCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAK--VITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~--~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...| .++.+++..+... ....+..+..+.  +.++++..  |+..........|||++.
T Consensus       466 i~~v~Q~~~l~~~ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~  532 (1284)
T 3g5u_A          466 IGVVSQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK  532 (1284)
T ss_dssp             EEEECSSCCCCSSCHHHHHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred             eEEEcCCCccCCccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence            55566665544 4566666654322 222222221111  11222211  233344556678999653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.13  E-value=1.2e-11  Score=121.97  Aligned_cols=51  Identities=22%  Similarity=0.188  Sum_probs=40.3

Q ss_pred             CCeeeeecce-eccccCC--ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        183 NGLTGQYLLR-KRVESQD--FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       183 ~~~~~~~~~~-~~l~~~~--~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      .+++..|+.. .++.+++  ..|++++|+||||||||||+|+|+ |+++|++|++
T Consensus        25 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~-Gl~~p~~G~~   78 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILA-GQLIPNLCGD   78 (538)
T ss_dssp             CCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHH-TSSCCCTTTT
T ss_pred             cCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCcc
Confidence            4555556433 2455554  349999999999999999999999 9999999985

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.11  E-value=7.2e-11  Score=118.11  Aligned_cols=83  Identities=22%  Similarity=0.276  Sum_probs=71.0

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSVP-VFVVVTKIDMCP-   80 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-   80 (320)
                      ....+.|+|+|||++|.  |+.+...+|.+++  ||+++.|       +++|+++|+.++..+++| ++||+||+|+.. 
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~ll--VVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAIL--CVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEE--EEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEE--EEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence            34568999999999999  9999999999999  9999987       578999999999999996 788899999976 


Q ss_pred             -hhHHHHHHHHHHHhhc
Q psy15138         81 -PNVLQDTLKLLVRILK   96 (320)
Q Consensus        81 -~~~le~~l~~~~~~l~   96 (320)
                       ...+++..+++...+.
T Consensus       321 ~~~~~~ei~~~l~~~l~  337 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLV  337 (611)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence             5666666667766554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.09  E-value=1.3e-11  Score=123.23  Aligned_cols=51  Identities=20%  Similarity=0.187  Sum_probs=40.0

Q ss_pred             CCeeeeecce-eccccCC--ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        183 NGLTGQYLLR-KRVESQD--FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       183 ~~~~~~~~~~-~~l~~~~--~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      .+++..|+.. .++.+++  -.|++++|+||||||||||+|+|+ |+++|++|++
T Consensus        95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~-Gll~p~~G~~  148 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA-GQLIPNLCED  148 (607)
T ss_dssp             GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHT-TSSCCCTTTT
T ss_pred             CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHh-CCCCCCCCcc
Confidence            3455555433 2455554  249999999999999999999999 9999999985

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.09  E-value=5.9e-11  Score=115.69  Aligned_cols=67  Identities=30%  Similarity=0.301  Sum_probs=62.1

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ....+.|+|+|||++|.  |..++..+|.+++  |+++++|.++||++|+..++.+++|.++++||+|+..
T Consensus        49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL--VVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVL--VVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE  117 (501)
T ss_dssp             TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE--EEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE--EeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence            34568999999999999  7888999999999  9999999999999999999999999999999999964

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.08  E-value=3.3e-11  Score=108.79  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .++|+||||||||||+|+|+ |...|++|++.+.+.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~-g~~~~~~G~i~~~g~~   39 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLF-KSQVSRKASSWNREEK   39 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHH-HHHC------------
T ss_pred             EEEEECCCCCCHHHHHHHHh-CCCCCCCCccccCCcc
Confidence            48999999999999999999 9999999999887543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.07  E-value=4.4e-10  Score=108.15  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             ceEEEeCCCcchhh-----------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD-----------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-----------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||.+++.           .......+|.+++  |+++..|+.....+-..+.+..+.|.++|+||+|+..
T Consensus        50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~--V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~  124 (439)
T 1mky_A           50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLF--VVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR  124 (439)
T ss_dssp             EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEE--EEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred             EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence            47789999987531           1122456788877  9999998877665545566667889999999999853

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.05  E-value=4.2e-11  Score=120.47  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      +..+.+||+|||.+|.  +..+....|.|++  ||+|.+|+++||+.++..|+..++|++++|||+|....+ ++..+++
T Consensus        66 ~~~iNlIDTPGH~DF~~Ev~raL~~~Dgavl--VVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~-~~~~~~~  142 (638)
T 3j25_A           66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAIL--LISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID-LSTVYQD  142 (638)
T ss_dssp             SCBCCCEECCCSSSTHHHHHHHHTTCSEEEC--CEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC-SHHHHHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEE--EEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC-HHHHHHH
Confidence            3568999999999999  7777888999999  999999999999999999999999999999999986543 3556777


Q ss_pred             HHHhhc
Q psy15138         91 LVRILK   96 (320)
Q Consensus        91 ~~~~l~   96 (320)
                      +.+.+.
T Consensus       143 i~~~l~  148 (638)
T 3j25_A          143 IKEKLS  148 (638)
T ss_dssp             HHHTTC
T ss_pred             HHHHhC
Confidence            777664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.7e-10  Score=115.21  Aligned_cols=52  Identities=23%  Similarity=0.294  Sum_probs=39.4

Q ss_pred             CCeeeeeccee-cccc--CCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138        183 NGLTGQYLLRK-RVES--QDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR  235 (320)
Q Consensus       183 ~~~~~~~~~~~-~l~~--~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~  235 (320)
                      .+.+..|+... .+..  ..-.|++++|+||||||||||+|+|+ |+++|++|++.
T Consensus        81 ~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~-Gll~P~~G~i~  135 (608)
T 3j16_B           81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILA-GKQKPNLGRFD  135 (608)
T ss_dssp             TTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHH-TSSCCCTTTTC
T ss_pred             CCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHh-cCCCCCCceEe
Confidence            45666664221 2222  12249999999999999999999999 99999999984

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.00  E-value=2.5e-11  Score=100.84  Aligned_cols=46  Identities=20%  Similarity=0.244  Sum_probs=38.2

Q ss_pred             eccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        193 KRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       193 ~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .+++++++   .|++++|+||||||||||+|+|+ |.+ |.+|+|.+.+..
T Consensus        21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~-g~l-~~~G~V~~~g~~   69 (158)
T 1htw_A           21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGML-QGI-GHQGNVKSPTYT   69 (158)
T ss_dssp             HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHH-HHT-TCCSCCCCCTTT
T ss_pred             HHHhccccccCCCCEEEEECCCCCCHHHHHHHHH-HhC-CCCCeEEECCEe
Confidence            34444444   39999999999999999999999 999 999999887543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.97  E-value=2.8e-10  Score=112.46  Aligned_cols=80  Identities=16%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.+||||||.+|.  +-......|.|++  ||+|.+|+++||+..+..|+..++|.+++|||||....+ ++..++++
T Consensus       100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvl--Vvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad-~~~~~~~i  176 (548)
T 3vqt_A          100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALV--VIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH-PLDVMADI  176 (548)
T ss_dssp             EEEEEECCCCGGGCSHHHHHHHHSCSEEEE--EEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC-HHHHHHHH
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHHhcCceEE--EeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc-hhHhhhhh
Confidence            468999999999999  6666778899999  999999999999999999999999999999999986543 45677777


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...|.
T Consensus       177 ~~~l~  181 (548)
T 3vqt_A          177 EQHLQ  181 (548)
T ss_dssp             HHHHT
T ss_pred             hhhcC
Confidence            77664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.9e-10  Score=114.76  Aligned_cols=93  Identities=18%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-C-ccccceeecCCCCCCCHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-F-DSVGNVVNKPEHGSLDWVK  279 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~  279 (320)
                      |++++|+||||||||||+++|+ |+++|++|+...       ...+   +..+|.... + .++.+++..........  
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~-Gl~~p~~G~~~~-------~~~i---~~~~q~~~~~~~~tv~e~~~~~~~~~~~~--  444 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLA-GALKPDEGQDIP-------KLNV---SMKPQKIAPKFPGTVRQLFFKKIRGQFLN--  444 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHH-TSSCCSBCCCCC-------SCCE---EEECSSCCCCCCSBHHHHHHHHCSSTTTS--
T ss_pred             ceEEEEECCCCCcHHHHHHHHh-cCCCCCCCcCcc-------CCcE---EEecccccccCCccHHHHHHHHhhccccc--
Confidence            5899999999999999999999 999999997321       1113   333343221 1 12222222111111111  


Q ss_pred             HHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        280 ICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       280 ~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                       .....   ++++.+++.+..++++++|||++
T Consensus       445 -~~~~~---~~l~~l~l~~~~~~~~~~LSGGq  472 (608)
T 3j16_B          445 -PQFQT---DVVKPLRIDDIIDQEVQHLSGGE  472 (608)
T ss_dssp             -HHHHH---HTHHHHTSTTTSSSBSSSCCHHH
T ss_pred             -HHHHH---HHHHHcCChhhhcCChhhCCHHH
Confidence             12223   34445566788899999999965

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.95  E-value=1.6e-09  Score=107.87  Aligned_cols=64  Identities=27%  Similarity=0.248  Sum_probs=59.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.|+|+|||++|.  +-.+...+|.+++  |+++++|++++|.+++.+++..++|.++++||+|+..
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aIL--VvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAIL--IVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH  136 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence            48999999999999  5566788999988  9999999999999999999999999999999999863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.95  E-value=7.8e-11  Score=116.13  Aligned_cols=32  Identities=31%  Similarity=0.520  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      |+++||+||||||||||+|+|+ |+++|++|++
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~-Gl~~p~~G~i   56 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILA-GEIIPNFGDP   56 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHT-TSSCCCTTCT
T ss_pred             CCEEEEECCCCCcHHHHHHHHh-cCCCCCCCcc
Confidence            9999999999999999999999 9999999988

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.93  E-value=2.6e-10  Score=112.05  Aligned_cols=65  Identities=22%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ..+.|+|+|||++|.  +..+...+|.+++  |+++++|.+++|++|+..++..++|+++++||+|+..
T Consensus        52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL--VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~  118 (537)
T 3izy_P           52 EKITFLDTPGHAAFSAMRARGTQVTDIVIL--VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE  118 (537)
T ss_dssp             SCCBCEECSSSCCTTTSBBSSSBSBSSCEE--ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred             CEEEEEECCChHHHHHHHHHHHccCCEEEE--EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            368999999999999  7788999999999  9999999999999999999999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.91  E-value=4.3e-11  Score=103.41  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=25.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      |++++|+||||||||||+++|+ |+++
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~-gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLR-ERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH-HHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hhCC
Confidence            9999999999999999999999 9986

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.91  E-value=2.5e-10  Score=118.67  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=62.0

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF  260 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~  260 (320)
                      +++..|+...++++++|.   |++++|+||||||||||+|+|+ |      |.+  .+.........+++.|........
T Consensus       440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~La-g------G~i--~g~~~~~~~~~~~v~q~~~~~~~~  510 (986)
T 2iw3_A          440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA-N------GQV--DGFPTQEECRTVYVEHDIDGTHSD  510 (986)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-H------TCS--TTCCCTTTSCEEETTCCCCCCCTT
T ss_pred             eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-C------CCc--CCCccccceeEEEEcccccccccC
Confidence            345556666778888876   9999999999999999999998 4      322  111111111122333221111111


Q ss_pred             ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCC
Q psy15138        261 DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHV  311 (320)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~  311 (320)
                      .++.+++... ..  ..   .   +++.+.++.+|+. ++.++++++|||++
T Consensus       511 ltv~e~l~~~-~~--~~---~---~~v~~~L~~lgL~~~~~~~~~~~LSGGq  553 (986)
T 2iw3_A          511 TSVLDFVFES-GV--GT---K---EAIKDKLIEFGFTDEMIAMPISALSGGW  553 (986)
T ss_dssp             SBHHHHHHTT-CS--SC---H---HHHHHHHHHTTCCHHHHHSBGGGCCHHH
T ss_pred             CcHHHHHHHh-hc--CH---H---HHHHHHHHHcCCChhhhcCCcccCCHHH
Confidence            1222333221 11  11   2   3344556667774 67899999999964

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.86  E-value=2.6e-09  Score=106.31  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +..+...+|.+++  |+++++|+..+|++++..+...++|.++++||+|+.+.. .++..+++
T Consensus        71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aIL--VVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei  147 (599)
T 3cb4_D           71 YQLNFIDTPGHVDFSYEVSRSLAACEGALL--VVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEI  147 (599)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHHHCSEEEE--EEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred             EEEEEEECCCchHHHHHHHHHHHHCCEEEE--EEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHH
Confidence            357899999999998  5566778899988  999999999999999999999999999999999997643 34455666


Q ss_pred             HHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         92 VRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        92 ~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ...+..   ...+ -+..+..+....+++...+...
T Consensus       148 ~~~lg~---~~~~-vi~vSAktg~GI~~Ll~~I~~~  179 (599)
T 3cb4_D          148 EDIVGI---DATD-AVRCSAKTGVGVQDVLERLVRD  179 (599)
T ss_dssp             HHHTCC---CCTT-CEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHhCC---Ccce-EEEeecccCCCchhHHHHHhhc
Confidence            665421   1111 1223345556677776666554

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.85  E-value=2.6e-09  Score=106.20  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +..+...+|.+++  |+++++|+..+|++++..+...++|.++++||+|+.... .+...+++
T Consensus        73 ~~inliDTPGh~dF~~ev~r~l~~aD~aIL--VVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el  149 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFSYEVSRALAACEGALL--LIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQI  149 (600)
T ss_dssp             EEEEEECCCCSGGGHHHHHHHHHTCSEEEE--EEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred             EEEEEEECCCcHhHHHHHHHHHHhCCEEEE--EEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHH
Confidence            357899999999998  5556678899988  999999999999999999999999999999999997543 34555666


Q ss_pred             HHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         92 VRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        92 ~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ...+.   +...+ -+..+..+....+++...+...
T Consensus       150 ~~~lg---~~~~~-vi~vSAktg~GI~~Lle~I~~~  181 (600)
T 2ywe_A          150 EEVLG---LDPEE-AILASAKEGIGIEEILEAIVNR  181 (600)
T ss_dssp             HHTSC---CCGGG-CEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHhhC---CCccc-EEEEEeecCCCchHHHHHHHHh
Confidence            65432   11101 1223345556677666666554

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.84  E-value=3.8e-10  Score=97.86  Aligned_cols=41  Identities=15%  Similarity=0.047  Sum_probs=34.7

Q ss_pred             eccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        193 KRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       193 ~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                      .+++++ ..|++++|+||||||||||+++|+ |+ +|++|+|..
T Consensus        14 ~~l~~i-~~Ge~~~liG~nGsGKSTLl~~l~-Gl-~p~~G~I~~   54 (208)
T 3b85_A           14 HYVDAI-DTNTIVFGLGPAGSGKTYLAMAKA-VQ-ALQSKQVSR   54 (208)
T ss_dssp             HHHHHH-HHCSEEEEECCTTSSTTHHHHHHH-HH-HHHTTSCSE
T ss_pred             HHHHhc-cCCCEEEEECCCCCCHHHHHHHHh-cC-CCcCCeeee
Confidence            344443 349999999999999999999999 99 999999954

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.84  E-value=1.8e-09  Score=99.30  Aligned_cols=32  Identities=34%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCce
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGH  233 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~  233 (320)
                      .|++++|+||||||||||+++|+ |+++|..|.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~-gll~~~~G~  120 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQ-ALLARWDHH  120 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH-HHHHTSTTC
T ss_pred             CCEEEEEECCCCchHHHHHHHHH-hhccccCCC
Confidence            48999999999999999999999 999987663

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.83  E-value=8.4e-11  Score=113.71  Aligned_cols=101  Identities=12%  Similarity=-0.104  Sum_probs=61.5

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-e-eeeccccchhhhhcCcceeeeccccCC--ccccceeecCCCCCCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-H-ARQKLFRHKHEMESGRTSSVGNDILGF--DSVGNVVNKPEHGSLD  276 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~-i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~  276 (320)
                      .|++++|+||||||||||+|+|+ |+++|++| + +.+++.   ....+++++|.......+  .+..+++ ++......
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~-Gl~~p~~G~~pI~vdg~---~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~  211 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLC-SYALKFNAYQPLYINLD---PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG  211 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHH-HTTHHHHCCCCEEEECC---TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh-CcccccCCceeEEEcCC---ccCCeeeeccchhhcccccccchhhhh-cccccccC
Confidence            49999999999999999999999 99999999 8 888752   122345555543221111  1233233 21110000


Q ss_pred             HHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        277 WVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       277 ~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      . .   ...++.++++.+|+.+..+  +.+|||++.
T Consensus       212 ~-~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~  241 (460)
T 2npi_A          212 A-T---LLHNKQPMVKNFGLERINE--NKDLYLECI  241 (460)
T ss_dssp             C-C---SSCCBCCEECCCCSSSGGG--CHHHHHHHH
T ss_pred             c-c---hHHHHHHHHHHhCCCcccc--hhhhhHHHH
Confidence            0 0   0122335667777777655  888888653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.82  E-value=6.6e-10  Score=112.43  Aligned_cols=43  Identities=19%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHH---------------------HHHhcCcCCCCCceee
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLL---------------------GVLTHGELDNGRGHAR  235 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl---------------------~~l~~G~l~~~~G~i~  235 (320)
                      ..++++++|.   |++++|+||||||||||+                     +++. |+..|+.|.+.
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~-~l~~~~~~~i~   97 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLG-QMEKPDVDAIE   97 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEE
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhc-ccccCCcccee
Confidence            3468888876   999999999999999998                     8888 99999866553

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.81  E-value=2.6e-09  Score=108.67  Aligned_cols=81  Identities=16%  Similarity=0.108  Sum_probs=69.3

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      +..+.+||+|||.+|.  .-......|.|++  ||+|.+|+++||+.-+..|...++|++++|||+|.... .++..+++
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~Dgavl--vVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a-~~~~~~~e  160 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVV--VFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-NFLRVVEQ  160 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC-CHHHHHHH
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc-cHHHHHHH
Confidence            4569999999999999  6666778899999  99999999999999999999999999999999998643 34556777


Q ss_pred             HHHhhc
Q psy15138         91 LVRILK   96 (320)
Q Consensus        91 ~~~~l~   96 (320)
                      +...+.
T Consensus       161 i~~~l~  166 (709)
T 4fn5_A          161 IKKRLG  166 (709)
T ss_dssp             HHHHHC
T ss_pred             hhhhcc
Confidence            776654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.76  E-value=1.1e-08  Score=98.27  Aligned_cols=66  Identities=17%  Similarity=0.164  Sum_probs=44.0

Q ss_pred             CceEEEeCCCcc--------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138         14 NAASVFETRIHE--------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        14 ~~~~~~d~pgh~--------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~   81 (320)
                      ..+.++|+||++        +|.  .......+|.+++  |+++..|......+...+++..+.|+++|+||+|+...
T Consensus        51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~--vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIF--MVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC---
T ss_pred             ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc
Confidence            358899999996        454  2223456787777  99999998887766666666678899999999998643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.73  E-value=7.3e-09  Score=101.88  Aligned_cols=80  Identities=16%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +......+|.+++  |+++.+|+..++++++..++..++|.++++||+|+..... ++.++++
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~~Il--VvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i  158 (529)
T 2h5e_A           82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLM--VIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEV  158 (529)
T ss_dssp             EEEEEECCCCSTTCCHHHHHGGGGCSEEEE--EEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHH
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHCCEEEE--EEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHH
Confidence            458899999999998  6667788999988  9999999999999999999999999999999999976544 3455666


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      .+.+.
T Consensus       159 ~~~l~  163 (529)
T 2h5e_A          159 ENELK  163 (529)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            66553

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.70  E-value=4.5e-09  Score=91.54  Aligned_cols=38  Identities=18%  Similarity=0.061  Sum_probs=29.1

Q ss_pred             cccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        195 VESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       195 l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                      +++++|.   |+.++|+||||||||||+++|+ |++ |  |.+.+
T Consensus        13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~-g~~-p--G~i~~   53 (218)
T 1z6g_A           13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLL-NEF-P--NYFYF   53 (218)
T ss_dssp             ---------CCCCEEEECSTTSSHHHHHHHHH-HHS-T--TTEEE
T ss_pred             ccCCceecCCCCEEEEECCCCCCHHHHHHHHH-hhC-C--CcEEE
Confidence            4555554   9999999999999999999999 988 5  88877

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.70  E-value=1.7e-09  Score=96.99  Aligned_cols=62  Identities=8%  Similarity=0.032  Sum_probs=40.7

Q ss_pred             CCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHH
Q psy15138         22 RIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        22 pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      |||....   +...+.++|.++.  |++|..|...... .+.++   +.|.++++||+|+.+.+..+..++
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~--VvDar~P~~~~~~-~l~ll---~k~~iivlNK~DL~~~~~~~~~~~   69 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVE--VRDARAPFATSAY-GVDFS---RKETIILLNKVDIADEKTTKKWVE   69 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEE--EEETTSTTTTSCT-TSCCT---TSEEEEEEECGGGSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEE--EeeCCCCCcCcCh-HHHhc---CCCcEEEEECccCCCHHHHHHHHH
Confidence            8998776   5666788999988  9999987654321 11111   779999999999998755444433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.69  E-value=3.2e-10  Score=111.55  Aligned_cols=109  Identities=8%  Similarity=-0.017  Sum_probs=67.5

Q ss_pred             eeccccCCc----cCcEEEEEcCCCChHHHHHHH--HhcCcCCCCCceeeeccccchh-----hhhcCcceeeeccccCC
Q psy15138        192 RKRVESQDF----LEIRVAVVGNVDAGKSTLLGV--LTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVGNDILGF  260 (320)
Q Consensus       192 ~~~l~~~~~----~g~~v~ivGpnGsGKSTLl~~--l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~~~~~~~  260 (320)
                      ...++++++    .|+.++|+||||||||||+++  ++ |+++|++|.+.+.+.+...     ....|+++|.+...   
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~-Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~---  100 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN-GIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE---  100 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT---
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH-HHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc---
Confidence            445666666    499999999999999999999  78 9999999999987654211     12345544433211   


Q ss_pred             ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEE
Q psy15138        261 DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGML  317 (320)
Q Consensus       261 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l  317 (320)
                         .+........  ..        +..++++.+++.+..++.+..|||++|+..+|
T Consensus       101 ---~~l~~~~~~~--~~--------~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lil  144 (525)
T 1tf7_A          101 ---GKLFILDASP--DP--------EGQEVVGGFDLSALIERINYAIQKYRARRVSI  144 (525)
T ss_dssp             ---TSEEEEECCC--CS--------SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             ---CcEEEEecCc--cc--------chhhhhcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence               0011110000  00        01123344455667788888999888887655

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.68  E-value=2.8e-08  Score=96.00  Aligned_cols=65  Identities=17%  Similarity=0.166  Sum_probs=49.8

Q ss_pred             CceEEEeCCC--------cchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRI--------HERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pg--------h~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ..+.++|+||        +++|.  .......+|.+++  |+++..|......+-+.+++..+.|+++++||+|+..
T Consensus        71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~--VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A           71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIF--MVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEE--EEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred             ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEE--EEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence            4588999999        77777  2223456788877  9999999998888877888878889999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.67  E-value=2.2e-09  Score=110.33  Aligned_cols=41  Identities=24%  Similarity=0.190  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHHcCC-C--cEEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138         53 GMTKEHLGLALALSV-P--VFVVV----TKIDMCPPNVLQDTLKLLVR   93 (320)
Q Consensus        53 ~~t~~~l~l~~~l~i-~--~~v~l----nk~Dl~~~~~le~~l~~~~~   93 (320)
                      +..+.+++||++|.. |  .++++    |.+|-.+.+||.+.+.+++.
T Consensus       382 GGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~  429 (842)
T 2vf7_A          382 PGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR  429 (842)
T ss_dssp             HHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence            577789999999999 5  37777    99999999999998888865

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.67  E-value=1.6e-08  Score=102.70  Aligned_cols=81  Identities=16%  Similarity=0.122  Sum_probs=68.7

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.|+|+|||++|.  +......+|.+++  |+++.+|+..+|++++..+...++|.++++||+|+...+ +++.++++
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIl--VvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~-~~~~~~~l  158 (704)
T 2rdo_7           82 HRINIIDTPGHVDFTIEVERSMRVLDGAVM--VYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGAN-FLKVVNQI  158 (704)
T ss_pred             eeEEEEeCCCccchHHHHHHHHHHCCEEEE--EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccccc-HHHHHHHH
Confidence            568899999999998  5555677899988  999999999999999999999999999999999997643 56677777


Q ss_pred             HHhhcC
Q psy15138         92 VRILKS   97 (320)
Q Consensus        92 ~~~l~~   97 (320)
                      ...+..
T Consensus       159 ~~~l~~  164 (704)
T 2rdo_7          159 KTRLGA  164 (704)
T ss_pred             HHHhCC
Confidence            776643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.67  E-value=1.4e-08  Score=92.08  Aligned_cols=65  Identities=15%  Similarity=0.004  Sum_probs=41.7

Q ss_pred             EEeCCCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHH
Q psy15138         18 VFETRIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        18 ~~d~pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~   87 (320)
                      |=+.|||..-.   +......+|.++.  |++|..|....   +..+.+.++- |.++++||+|+.+.+..+..
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~--VvDAr~p~~~~---~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~   71 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYE--LVDARIPMSSR---NPMIEDILKNKPRIMLLNKADKADAAVTQQW   71 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEE--EEETTSTTTTS---CHHHHHHCSSSCEEEEEECGGGSCHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCccC---CHHHHHHHCCCCEEEEEECcccCCHHHHHHH
Confidence            34789998543   5556788999888  99999866542   2334455554 89999999999986554433

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.61  E-value=2.8e-08  Score=97.71  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=66.4

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  .......+|.+++  |+++..|...++.+++..++..++|.++++||+|+.... .++.++++
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~all--VvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-~~~~l~ei  158 (528)
T 3tr5_A           82 YLINLLDTPGHADFTEDTYRTLTAVDSALM--VIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-SIELLDEI  158 (528)
T ss_dssp             EEEEEECCCCSTTCCHHHHHGGGGCSEEEE--EEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-HHHHHHHH
T ss_pred             EEEEEEECCCchhHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-HHHHHHHH
Confidence            458899999999999  5555678899988  999999999999999999999999999999999997543 33445666


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      .+.+.
T Consensus       159 ~~~l~  163 (528)
T 3tr5_A          159 ESILR  163 (528)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            66553

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.58  E-value=1.2e-08  Score=88.96  Aligned_cols=36  Identities=19%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~  238 (320)
                      |+.++|+||||||||||+++|+ |.++|  ..|.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~-g~~~p~~~~g~v~~tt   53 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALL-KTQPLYDTQVSVSHTT   53 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH-HHSCTTTEEECCCEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHh-ccCCCCceEEEEEecC
Confidence            8899999999999999999999 99986  578777654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.55  E-value=4.1e-08  Score=99.31  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=35.7

Q ss_pred             chhHHHHHHHHHHcCC-Cc--EEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138         52 VGMTKEHLGLALALSV-PV--FVVV----TKIDMCPPNVLQDTLKLLVR   93 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~--~v~l----nk~Dl~~~~~le~~l~~~~~   93 (320)
                      .+..+.+++||++|-. |.  ++++    +.+|..+..|+.+.+.++.+
T Consensus       204 SGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~  252 (670)
T 3ux8_A          204 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD  252 (670)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence            3577889999999988 65  7777    99999999999999888864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.55  E-value=1e-08  Score=91.94  Aligned_cols=43  Identities=19%  Similarity=0.085  Sum_probs=36.4

Q ss_pred             cccCCc-cCcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceeeecc
Q psy15138        195 VESQDF-LEIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHARQKL  238 (320)
Q Consensus       195 l~~~~~-~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~~~~  238 (320)
                      +++++. .|+.++|+||||||||||+++|+ |+++|. +|.|.+..
T Consensus        17 l~~i~i~~g~~v~i~Gp~GsGKSTll~~l~-g~~~~~~~G~I~~~g   61 (261)
T 2eyu_A           17 VLELCHRKMGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITIE   61 (261)
T ss_dssp             HHHGGGCSSEEEEEECSTTCSHHHHHHHHH-HHHHHHCCCEEEEEE
T ss_pred             HHHHhhCCCCEEEEECCCCccHHHHHHHHH-HhCCCCCCCEEEEcC
Confidence            333334 39999999999999999999999 999997 99998764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.55  E-value=2.5e-08  Score=96.53  Aligned_cols=37  Identities=19%  Similarity=0.107  Sum_probs=34.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      ++++|+||||||||||+++|+ |+++|++|+|.+++.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~   66 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFV-TALIPDLTLLNFRNTT   66 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH-HHHCCCTTTCCCCCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHh-cCCCCCCCEEEECCEE
Confidence            789999999999999999999 9999999999987543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.55  E-value=2.2e-08  Score=93.42  Aligned_cols=60  Identities=17%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .++..++.+.|..   ...+++.+ +.   |++++|+||||||||||+++|+ |+.+|+.|.+.+.+.
T Consensus        45 ~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~-g~~~~~~g~i~~~G~  107 (347)
T 2obl_A           45 PLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMIC-NGASADIIVLALIGE  107 (347)
T ss_dssp             STTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHH-HHSCCSEEEEEEESC
T ss_pred             CeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHh-cCCCCCEEEEEEecc
Confidence            3444544443321   34566666 54   9999999999999999999999 999999998877654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.52  E-value=2.8e-08  Score=90.92  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=35.6

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .|++++|+||||||||||++.|+ |+++|.+|++.+...+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~La-g~l~~~~g~V~l~g~d  137 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLA-HRLKNEGTKVLMAAGD  137 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEECCC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH-HHHHHcCCeEEEEeec
Confidence            48999999999999999999999 9999999999887543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.52  E-value=8.7e-09  Score=94.26  Aligned_cols=51  Identities=18%  Similarity=0.060  Sum_probs=38.7

Q ss_pred             eeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        177 RQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                      +++++++.|.     ..+++++++.   |++++|+||||||||||+++|+ |++   +|+|..
T Consensus       103 ~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~-gl~---~G~I~~  156 (305)
T 2v9p_A          103 NYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLI-HFL---GGSVLS  156 (305)
T ss_dssp             HHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHH-HHH---TCEEEC
T ss_pred             EEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHh-hhc---CceEEE
Confidence            4444444442     3455555554   9999999999999999999999 998   798864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.52  E-value=2.1e-08  Score=95.45  Aligned_cols=35  Identities=31%  Similarity=0.521  Sum_probs=32.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .++|+||||||||||+|+|+ |+++|++|++...+.
T Consensus        71 ~valvG~nGaGKSTLln~L~-Gl~~p~~GsI~~~g~  105 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLR-GIGNEEEGAAKTGVV  105 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHH-TCCTTSTTSCCCCC-
T ss_pred             EEEEECCCCCcHHHHHHHHh-CCCCccCceEEECCe
Confidence            99999999999999999999 999999999987653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.51  E-value=2.4e-08  Score=95.97  Aligned_cols=60  Identities=15%  Similarity=0.118  Sum_probs=46.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .++++++++.|..   ..++++++ +.   |++++|+||||||||||+++|+ |+.+|+.|.+.+.+.
T Consensus       131 ~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Ia-g~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          131 PLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMA-RYTRADVIVVGLIGE  193 (438)
T ss_dssp             TTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHH-HHSCCSEEEEEEESC
T ss_pred             ceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHh-cccCCCeEEEEEece
Confidence            4555555555532   23455555 44   9999999999999999999999 999999999988765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.50  E-value=5.2e-08  Score=90.23  Aligned_cols=37  Identities=16%  Similarity=0.137  Sum_probs=35.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      |+.++|+||||||||||+++|+ |+++|++|.+.+++.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~-g~~~~~~g~i~i~~~  207 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIM-EFIPKEERIISIEDT  207 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGG-GGSCTTSCEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCCcCCCcEEEECCe
Confidence            9999999999999999999999 999999999998753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.47  E-value=3.1e-08  Score=82.78  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             cCcEEEEEcCCCChHHHHHH------------HHhcCcCCCCCceeeec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLG------------VLTHGELDNGRGHARQK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~------------~l~~G~l~~~~G~i~~~  237 (320)
                      .|+.++|+||||||||||++            .+. |.+.++.|...+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~-g~~~~~~~~~~~~   55 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCR-GLMSDDENDQTVT   55 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHH-HHHCSSTTCGGGH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHH-HHhcCcccchhhH
Confidence            38999999999999999999            676 7777777765543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.47  E-value=2.4e-08  Score=85.19  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      |++++|+||||||||||+++|+ |+++ ++| +.+++.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~-g~~~-~~G-i~~~g~   35 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKAS-EVLK-SSG-VPVDGF   35 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHH-HHHH-HTT-CCCEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHH-hhcc-cCC-EEEcCE
Confidence            6789999999999999999999 9998 889 877643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.47  E-value=5e-08  Score=89.32  Aligned_cols=39  Identities=23%  Similarity=0.024  Sum_probs=35.6

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .|++++|+||||||||||++.|+ |+++|++|++.+...+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~La-gll~~~~g~V~l~g~D  139 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLG-RYYQNLGKKVMFCAGD  139 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH-HHHHTTTCCEEEECCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH-HHHHhcCCEEEEEeec
Confidence            48899999999999999999999 9999999999887543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.46  E-value=2.9e-07  Score=75.99  Aligned_cols=111  Identities=24%  Similarity=0.278  Sum_probs=72.3

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  .......+|.+++  |++++++..+.+.+.+..+...++|.++|+||+|+.... .++....+
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~  131 (178)
T 2lkc_A           55 KKITFLDTPGHEAFTTMRARGAQVTDIVIL--VVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQEL  131 (178)
T ss_dssp             EEEEESCCCSSSSSSCSCCSSCCCCCEEEE--EEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHH
T ss_pred             ceEEEEECCCCHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHH
Confidence            347788999999999  4445667788877  999999988888888887777788999999999997632 12222222


Q ss_pred             HHhhcCCCccccC--cccc-ccCCchhHHHHHHHHHHHHHH
Q psy15138         92 VRILKSPGCRKVP--VMNC-LISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        92 ~~~l~~~~~~~i~--~kl~-~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      ...  ........  ..+. .+..+.+.++++...+.....
T Consensus       132 ~~~--~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          132 MEY--NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE  170 (178)
T ss_dssp             TTT--TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             Hhc--CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence            111  00111111  1222 234666777777777665433

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.45  E-value=9.2e-08  Score=89.65  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=34.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      |+.++|+||||||||||+++|+ |+++|++|.|.+..
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~-~~~~~~~g~I~ie~  210 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALM-QEIPFDQRLITIED  210 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHH-TTSCTTSCEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hcCCCCceEEEECC
Confidence            9999999999999999999999 99999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.44  E-value=1.2e-07  Score=79.85  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      |+.++|+||||||||||+++|+ |.  ++.|.+.++.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La-~~--~~~g~i~i~~   42 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALA-NL--PGVPKVHFHS   42 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHH-TC--SSSCEEEECT
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-hc--cCCCeEEEcc
Confidence            8889999999999999999999 87  6788877754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.44  E-value=5.5e-08  Score=83.26  Aligned_cols=26  Identities=42%  Similarity=0.391  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      |+.++|+||||||||||+++|. |+++
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~-~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLF-QEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHH-HHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hhCc
Confidence            6779999999999999999999 9875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.43  E-value=8.5e-08  Score=82.36  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=25.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      .|++++|+||||||||||+++|+ |++.|
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~-~~~~~   32 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALA-RTLGE   32 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHH-HHHGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HHhCC
Confidence            47889999999999999999999 88765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.43  E-value=5.3e-08  Score=83.87  Aligned_cols=37  Identities=27%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCC---CCceeeecc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN---GRGHARQKL  238 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~---~~G~i~~~~  238 (320)
                      .|++++|+||||||||||+++|+ |+++|   ..|.+.++.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~-~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLA-AALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHH-HHHHHTTCCEEEEESGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH-HHHhhcCCceEEEecCC
Confidence            48889999999999999999999 99985   467777653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.42  E-value=3.7e-07  Score=78.64  Aligned_cols=113  Identities=14%  Similarity=0.124  Sum_probs=76.3

Q ss_pred             CceEEEeCCCcc----------hhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRIHE----------RDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pgh~----------~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      ..+.|+|+|||.          +|.     .+.....+|.+++  |+++.++.....++.+..++..++|+++|+||+|+
T Consensus        79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~--v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl  156 (223)
T 4dhe_A           79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMIL--MMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK  156 (223)
T ss_dssp             CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred             CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence            468899999973          222     3444666788877  99999988888888888888888999999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCC---C-ccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         79 CPPNVLQDTLKLLVRILKSP---G-CRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~~---~-~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      .+...++..++++...+...   . ....+. +.....+.++++++...+.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~SA~~g~gv~~l~~~l~~~~~  210 (223)
T 4dhe_A          157 LTRQESINALRATQKSLDAYRDAGYAGKLTV-QLFSALKRTGLDDAHALIESWLR  210 (223)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE-EEEBTTTTBSHHHHHHHHHHHHC
T ss_pred             CChhhHHHHHHHHHHHHHhhhhcccCCCCeE-EEeecCCCcCHHHHHHHHHHhcC
Confidence            98777666666555544321   0 011111 11334566677777777766543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.41  E-value=7.5e-08  Score=90.06  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=35.6

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .|++++|+||||||||||++.|+ |+++|.+|++.+...+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~La-g~l~~~~G~V~l~g~D  194 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLA-HRLKNEGTKVLMAAGD  194 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEECCC
T ss_pred             CCeEEEEEcCCCChHHHHHHHHH-hhccccCCEEEEeccc
Confidence            48999999999999999999999 9999999999887543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.40  E-value=1.5e-07  Score=95.33  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  .......+|.+++  |+++.+|...++.+++..++..++|.++++||+|+...+ ++..++++
T Consensus        77 ~~i~liDTPG~~df~~~~~~~l~~aD~~il--VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~~~~l  153 (691)
T 1dar_A           77 HRINIIDTPGHVDFTIEVERSMRVLDGAIV--VFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-LWLVIRTM  153 (691)
T ss_dssp             EEEEEECCCSSTTCHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-HHHHHHHH
T ss_pred             eEEEEEECcCccchHHHHHHHHHHCCEEEE--EEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC-HHHHHHHH
Confidence            458899999999998  4444567888888  999999999999999999999999999999999997543 56677777


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...+.
T Consensus       154 ~~~l~  158 (691)
T 1dar_A          154 QERLG  158 (691)
T ss_dssp             HHTTC
T ss_pred             HHHhC
Confidence            77654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.38  E-value=1.1e-07  Score=87.01  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCC--CCCceeee
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELD--NGRGHARQ  236 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~--~~~G~i~~  236 (320)
                      .|++++|+||||||||||+++|+ |++.  |++|.+.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~-~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQ-ALLSRWPEHRRVEL  115 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH-HHHTTSTTCCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HHHhhCCCCCeEEE
Confidence            37889999999999999999999 9988  99999987

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.36  E-value=1.9e-07  Score=94.35  Aligned_cols=79  Identities=24%  Similarity=0.164  Sum_probs=67.8

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||++|.  +......+|.+++  |+++.+|+.+++++++..++..++|.++++||+|+.  ...++..+++
T Consensus        74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~il--VvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l  149 (665)
T 2dy1_A           74 HRVFLLDAPGYGDFVGEIRGALEAADAALV--AVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDL  149 (665)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHH
T ss_pred             EEEEEEeCCCccchHHHHHHHHhhcCcEEE--EEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHH
Confidence            357889999999998  6666778888988  999999999999999999999999999999999997  4566677777


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...+.
T Consensus       150 ~~~l~  154 (665)
T 2dy1_A          150 RSTLG  154 (665)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            77654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.36  E-value=3e-08  Score=92.12  Aligned_cols=46  Identities=22%  Similarity=0.191  Sum_probs=38.5

Q ss_pred             eccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        193 KRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       193 ~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .+++++++   .|++++|+||||||||||+++|+ |++.|.+|.+.+...
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~-g~~~~~~g~v~i~~~   91 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG-SLLTAAGHKVAVLAV   91 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEEEE
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH-HhhhhCCCEEEEEEE
Confidence            34455544   39999999999999999999999 999999999987643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.36  E-value=1.2e-07  Score=91.79  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .|++++|+||||||||||+++|+ |++++.+|.|.+..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LA-gll~~~~G~V~l~g  328 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLA-RQFEQQGKSVMLAA  328 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEEC
T ss_pred             CCeEEEEECCCcccHHHHHHHHH-HHhhhcCCeEEEec
Confidence            39999999999999999999999 99999999998863

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.34  E-value=1.1e-07  Score=87.81  Aligned_cols=39  Identities=21%  Similarity=0.087  Sum_probs=35.5

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR  240 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~  240 (320)
                      .|++++|+||||||||||++.|+ |.++|.+|++.+...+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~La-g~l~~~~g~V~l~g~D  166 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLA-NWLKNHGFSVVIAASD  166 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH-HHHHhcCCEEEEEeec
Confidence            48999999999999999999999 9999999999887443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.33  E-value=1.3e-07  Score=81.83  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=27.9

Q ss_pred             cccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      +......|+.++|+||||||||||+++|+ |...+
T Consensus        18 l~ggi~~G~~~~l~G~nGsGKSTll~~l~-g~~~~   51 (231)
T 4a74_A           18 LGGGIETQAITEVFGEFGSGKTQLAHTLA-VMVQL   51 (231)
T ss_dssp             TTSSEESSEEEEEEESTTSSHHHHHHHHH-HHTTS
T ss_pred             hcCCCCCCcEEEEECCCCCCHHHHHHHHH-HHHhc
Confidence            33344459999999999999999999999 86554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.33  E-value=1.3e-07  Score=83.48  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=23.9

Q ss_pred             eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ..++++++|.   |++++|+||||||||||+++|+ |.+
T Consensus        12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~-~~l   49 (245)
T 2jeo_A           12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIM-ELL   49 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHH-HHH
T ss_pred             ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHH-HHh
Confidence            4466677665   9999999999999999999999 876

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.33  E-value=1.3e-06  Score=73.10  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=76.1

Q ss_pred             CceEEEeCCC----------cchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRI----------HERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pg----------h~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      ..+.++|+||          +++|.     .+.++..+|.+++  |++++.+......+.+..++..++|+++|+||+|+
T Consensus        68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~--v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  145 (195)
T 3pqc_A           68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFL--LVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK  145 (195)
T ss_dssp             TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEE--EecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence            4578999999          55555     3444567788877  99999888777777777778888999999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138         79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI  128 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~  128 (320)
                      .+....+...+++...+....  ..++ +-....+.+.++++...+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~Sa~~~~gv~~l~~~l~~~l  192 (195)
T 3pqc_A          146 VKMSERAKKLEEHRKVFSKYG--EYTI-IPTSSVTGEGISELLDLISTLL  192 (195)
T ss_dssp             SCGGGHHHHHHHHHHHHHSSC--CSCE-EECCTTTCTTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhhcC--CCce-EEEecCCCCCHHHHHHHHHHHh
Confidence            887777777777776654311  1111 1123355566777666665543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.32  E-value=1.8e-07  Score=78.69  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=28.5

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHhcCcCCC-CCceee
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDN-GRGHAR  235 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~  235 (320)
                      +.|+.++|+||||||||||++.|. +.+++ ..|.+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~-~~~~~~~~~~i~   38 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLI-TKHPDRFAYPIP   38 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH-HHCTTTEECCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH-hhCCccEEEeee
Confidence            458889999999999999999999 88763 344443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.32  E-value=1.2e-07  Score=88.88  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCC----ceeee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGR----GHARQ  236 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~----G~i~~  236 (320)
                      |++++|+||||||||||+++|+ |+++|.+    |.+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~-gl~~~~~~~e~G~i~i  207 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLA-AVFNTTSAWEYGREFV  207 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHH-HHTTCEEECCTTHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHH-HHhCCCcchhhHHHHH
Confidence            8999999999999999999999 9999998    88765

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.32  E-value=2.7e-08  Score=87.28  Aligned_cols=36  Identities=22%  Similarity=0.199  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .+.++|+||||||||||+++|+ |.+.|++|.|.+++
T Consensus        27 ~~~~~i~GpnGsGKSTll~~i~-g~~~~~~G~i~~~g   62 (227)
T 1qhl_A           27 ELVTTLSGGNGAGKSTTMAAFV-TALIPDLTLLHFRN   62 (227)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHH-HHHSCCTTTC----
T ss_pred             CcEEEEECCCCCCHHHHHHHHh-cccccCCCeEEECC
Confidence            3568999999999999999999 99999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.32  E-value=1.9e-07  Score=79.54  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=24.7

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      .|+.++|+||||||||||+++|+ |+++
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~-~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALV-KALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHH-HHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHH-hhCC
Confidence            38889999999999999999999 9864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.31  E-value=3.2e-07  Score=93.06  Aligned_cols=80  Identities=20%  Similarity=0.185  Sum_probs=65.8

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.++|+|||.+|.  .......+|.+++  |+++.+|...++++.+..++..++|.++++||+|+...+ ++..++++
T Consensus        75 ~~i~liDTPG~~df~~~~~~~l~~aD~~ll--VvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~-~~~~~~~l  151 (693)
T 2xex_A           75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVT--VLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN-FEYSVSTL  151 (693)
T ss_dssp             EEEEEECCCCCSSCCHHHHHHHHHCSEEEE--EEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-HHHHHHHH
T ss_pred             eeEEEEECcCCcchHHHHHHHHHHCCEEEE--EECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc-hHHHHHHH
Confidence            348899999999998  4444556888888  999999999999999999999999999999999997643 45566777


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ...+.
T Consensus       152 ~~~l~  156 (693)
T 2xex_A          152 HDRLQ  156 (693)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            76654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.29  E-value=2.2e-07  Score=87.32  Aligned_cols=62  Identities=16%  Similarity=0.051  Sum_probs=31.0

Q ss_pred             CceEEEeCCCcchhh-ccCCC-CccchhhhccceecCCCCchhHHHHHHHHHHc-CCCcEEEEeCCCCCCh
Q psy15138         14 NAASVFETRIHERDD-DLPEA-SPADHSMLQSKVGANAGIVGMTKEHLGLALAL-SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~-~~~~~-~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-~i~~~v~lnk~Dl~~~   81 (320)
                      +.+.-+|+| +++|. .+.-. ...|.++.  |+++.+.......   .+.+.+ +.|.++|+||+|+.+.
T Consensus        49 ~~~~~v~~~-~e~f~~~L~~~~~~~~lil~--VvD~~d~~~s~~~---~l~~~l~~~piilV~NK~DLl~~  113 (369)
T 3ec1_A           49 NEVQDVPLD-DDDFLSMLHRIGESKALVVN--IVDIFDFNGSFIP---GLPRFAADNPILLVGNKADLLPR  113 (369)
T ss_dssp             -----------CHHHHHHHHHHHHCCEEEE--EEETTCSGGGCCS---SHHHHCTTSCEEEEEECGGGSCT
T ss_pred             ccccCCcCC-HHHHHHHHHHhhccCcEEEE--EEECCCCCCchhh---HHHHHhCCCCEEEEEEChhcCCC
Confidence            334555666 78888 33322 33445555  9999875532111   112223 5589999999999754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.27  E-value=3.1e-07  Score=80.18  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=17.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |++++|+||||||||||+++|+.|++
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            89999999999999999999973455

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.27  E-value=2.5e-07  Score=78.88  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             eeeeecCCCeeeeecceeccccCCc-cCcEEEEEcCCCChHHHHHHHHhcCcC-----CCCCceeee
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDF-LEIRVAVVGNVDAGKSTLLGVLTHGEL-----DNGRGHARQ  236 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~v~ivGpnGsGKSTLl~~l~~G~l-----~~~~G~i~~  236 (320)
                      ++++++.+.|.     ...+++... .|.+++|+|+||||||||++.|+ |..     .|+.|.+..
T Consensus         4 l~~~~~~~~~~-----~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~-g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A            4 LNYQQTHFVMS-----APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT-NQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             -------CEEE-----ESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC-CC-------------CC
T ss_pred             hhhhhhhheee-----cCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHh-CCCccccccCCCcccee
Confidence            45555555553     134444333 39999999999999999999999 988     777787653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.27  E-value=1.8e-07  Score=96.85  Aligned_cols=80  Identities=18%  Similarity=0.164  Sum_probs=63.6

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC------hh---
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP------PN---   82 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~------~~---   82 (320)
                      ..+.++|+|||++|.  .......+|.+++  |+++.+|...++...+..+...++|+++++||+|+..      ++   
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ail--VvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~  175 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALV--VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY  175 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEE--EEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHH
Confidence            357899999999998  4444567888988  9999999999999888888888999999999999862      22   


Q ss_pred             -HHHHHHHHHHHhh
Q psy15138         83 -VLQDTLKLLVRIL   95 (320)
Q Consensus        83 -~le~~l~~~~~~l   95 (320)
                       .++..++++...+
T Consensus       176 ~~~~~~~~~i~~~l  189 (842)
T 1n0u_A          176 QTFARTVESVNVIV  189 (842)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence             3455566665554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.26  E-value=3e-07  Score=77.59  Aligned_cols=33  Identities=21%  Similarity=0.098  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      |+.++|+||||||||||+++|+ +   +..|.+.++.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~-~---~~~g~~~i~~   34 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLA-A---QLDNSAYIEG   34 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH-H---HSSSEEEEEH
T ss_pred             CeEEEEECCCCCcHHHHHHHHh-c---ccCCeEEEcc
Confidence            5679999999999999999999 6   5578777764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.23  E-value=4.3e-07  Score=82.91  Aligned_cols=48  Identities=29%  Similarity=0.275  Sum_probs=21.3

Q ss_pred             eeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCc-CCCCCceeeec
Q psy15138        185 LTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE-LDNGRGHARQK  237 (320)
Q Consensus       185 ~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~-l~~~~G~i~~~  237 (320)
                      ++..|+...++++++|   .++|+||||+|||||++.|. |. +.|.+| +...
T Consensus         4 l~~~~~~~~~l~~~~~---~I~lvG~nG~GKSTLl~~L~-g~~~~~~~g-i~~~   52 (301)
T 2qnr_A            4 LPNQVHRKSVKKGFEF---TLMVVGESGLGKSTLINSLF-LTDLYPERV-ISGA   52 (301)
T ss_dssp             --------------CE---EEEEEEETTSSHHHHHHHHH-C-------------
T ss_pred             CcceECCEEEEcCCCE---EEEEECCCCCCHHHHHHHHh-CCCccCCCC-cccC
Confidence            3344455566777766   47999999999999999999 97 888888 5543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.23  E-value=1.5e-07  Score=78.89  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLF  239 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~  239 (320)
                      ++++|+|+||||||||+++|. |+++|.   .|.|.++..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~-~~~~~~g~~~G~I~~dg~   41 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMM-PILRERGLRVAVVKRHAH   41 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHH-HHHHHTTCCEEEEEC---
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HHhhhcCCceEEEEEcCc
Confidence            468999999999999999999 999988   899988743

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.22  E-value=2.9e-07  Score=92.03  Aligned_cols=34  Identities=32%  Similarity=0.517  Sum_probs=25.7

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCCC-CCceeeeccc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELDN-GRGHARQKLF  239 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~~~~~  239 (320)
                      ++|+||||||||||+++|+ |++.| ++|.+.+.+.
T Consensus        48 iaIvG~nGsGKSTLL~~I~-Gl~~P~~sG~vt~~g~   82 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALS-GVALPRGSGIVTRCPL   82 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHH-SCC-------CCCSCE
T ss_pred             EEEECCCCChHHHHHHHHh-CCCCCCCCCeEEEcCE
Confidence            8999999999999999999 99988 7999987643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.22  E-value=8.9e-07  Score=81.03  Aligned_cols=112  Identities=19%  Similarity=0.178  Sum_probs=79.0

Q ss_pred             CCceEEEeCCCcchh----------h--ccCCCCccchhhhccceecCCCCchhHHHH-HHHHHHcCCCcEEEEeCCCCC
Q psy15138         13 ENAASVFETRIHERD----------D--DLPEASPADHSMLQSKVGANAGIVGMTKEH-LGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~----------~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~-l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      ...+.|+|+|||.++          .  .......+|.+++  |++++++......+. +..++..++|.++|+||+|+.
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~--VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~  135 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILF--MIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI  135 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEE--EEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEE--EEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence            345788999999543          2  2223456788877  999999988888877 777777889999999999998


Q ss_pred             -ChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138         80 -PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG  131 (320)
Q Consensus        80 -~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~  131 (320)
                       +...++..++++...+..  +  .+ -+-.+..+.++.+++...+...+.++
T Consensus       136 ~~~~~~~~~~~~l~~~~~~--~--~~-i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          136 GPAKNVLPLIDEIHKKHPE--L--TE-IVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             SSGGGGHHHHHHHHHHCTT--C--CC-EEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             CCHHHHHHHHHHHHHhccC--C--Ce-EEEEeCCCCCCHHHHHHHHHHhCccC
Confidence             777777777777765321  0  11 11134466677888888877766544

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.21  E-value=3.8e-06  Score=70.44  Aligned_cols=108  Identities=15%  Similarity=0.075  Sum_probs=72.6

Q ss_pred             CceEEEeCCC----------cchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRI----------HERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pg----------h~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      +.+.++|+||          +++|.     .+.++..+|.+++  |++++.+......+.+..+...++|.++|+||+|+
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  146 (195)
T 1svi_A           69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQ--IVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADK  146 (195)
T ss_dssp             TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence            4688999999          66665     2344456677777  99999887776665566666778899999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138         79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~  127 (320)
                      .+...++...+++.+.+....  .  ..+. ....+.+.++++...+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~gv~~l~~~l~~~  192 (195)
T 1svi_A          147 IPKGKWDKHAKVVRQTLNIDP--E--DELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             SCGGGHHHHHHHHHHHHTCCT--T--SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHcccC--C--CceEEEEccCCCCHHHHHHHHHHH
Confidence            887766666666666443210  1  1112 2335556677776666544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.20  E-value=3.6e-07  Score=76.97  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +++|+||||||||||+++|+ |++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~-g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIV-ERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HHHG
T ss_pred             EEEEECCCCCCHHHHHHHHH-HHhC
Confidence            58999999999999999999 9985

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.19  E-value=5.8e-07  Score=85.74  Aligned_cols=37  Identities=24%  Similarity=0.130  Sum_probs=33.9

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .|..++|+|||||||||||++|. |.++|.+|.|....
T Consensus       166 ~ggii~I~GpnGSGKTTlL~all-g~l~~~~g~I~~~e  202 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGL-QELNSSERNILTVE  202 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHH-HHHCCTTSCEEEEE
T ss_pred             cCCeEEEECCCCCCHHHHHHHHH-hhcCCCCCEEEEec
Confidence            48899999999999999999999 99999999988753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.17  E-value=8.5e-07  Score=86.75  Aligned_cols=36  Identities=19%  Similarity=0.196  Sum_probs=34.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      |+.++|+||||||||||+++|+ |+++|++|.+.+..
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~-~~i~~~~giitied  295 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIM-MFIPPDAKVVSIED  295 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHG-GGSCTTCCEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hhCCCCCCEEEEcC
Confidence            8889999999999999999999 99999999998864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.17  E-value=3.1e-06  Score=69.11  Aligned_cols=111  Identities=10%  Similarity=-0.102  Sum_probs=64.1

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.++|+|||++|.  .-.-...+|.+++  |++++++..  ........+.+.   .++|+++++||+|+.+....++
T Consensus        51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  128 (171)
T 1upt_A           51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY--VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE  128 (171)
T ss_dssp             EEEEEEEECCCGGGGGGGGGGCTTCSEEEE--EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEEEECCCChhhhHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHH
Confidence            357889999999998  2233557788877  999987642  222222233332   4678899999999976533333


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHc
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDN  130 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~  130 (320)
                      +...+....    +........ ....+.+..+++...+.+.+.+
T Consensus       129 ~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          129 MANSLGLPA----LKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHTGGG----CTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHhCchh----ccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            333332111    111111222 2335556677777776665543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.16  E-value=7.3e-07  Score=75.88  Aligned_cols=30  Identities=13%  Similarity=0.186  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      |+.++|+|||||||||++++|+ +.+.|+.|
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~-~~~~~~~~   35 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIF-EDPSTSYK   35 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHH-HCTTCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-HhhCCCeE
Confidence            7889999999999999999999 88866555

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.14  E-value=2.7e-06  Score=88.30  Aligned_cols=42  Identities=21%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             chhHHHHHHHHHHcCC-Cc--EEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138         52 VGMTKEHLGLALALSV-PV--FVVV----TKIDMCPPNVLQDTLKLLVR   93 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~~--~v~l----nk~Dl~~~~~le~~l~~~~~   93 (320)
                      .+..+.++.||++|.. |.  ++++    +.+|-.+..++.+.+.++.+
T Consensus       466 SGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~  514 (916)
T 3pih_A          466 SGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD  514 (916)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh
Confidence            3577789999999987 43  7777    99999999999888877754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.11  E-value=5.5e-07  Score=84.68  Aligned_cols=36  Identities=19%  Similarity=0.165  Sum_probs=32.6

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceeeec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHARQK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~~~  237 (320)
                      .|+.++|+||||||||||+++|+ |+++|. +|.|...
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~-~~~~~~~~g~I~~~  171 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITI  171 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHH-HHHHHHSCCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH-hhcCcCCCcEEEEe
Confidence            38999999999999999999999 999987 8998654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.11  E-value=6.1e-07  Score=85.55  Aligned_cols=32  Identities=25%  Similarity=0.242  Sum_probs=28.0

Q ss_pred             cccCCcc---CcE--EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        195 VESQDFL---EIR--VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       195 l~~~~~~---g~~--v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ++++++.   |++  ++|+||||||||||+++|+ |..
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~-G~~   66 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLF-NTK   66 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHH-TSC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHh-Ccc
Confidence            5665554   999  9999999999999999999 984

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.08  E-value=9.5e-06  Score=73.89  Aligned_cols=106  Identities=13%  Similarity=0.071  Sum_probs=70.6

Q ss_pred             ceEEEeCCCcc---------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC-hh
Q psy15138         15 AASVFETRIHE---------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP-PN   82 (320)
Q Consensus        15 ~~~~~d~pgh~---------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~-~~   82 (320)
                      .+.|+|+|||.         +|.  .......+|.+++  |++++. +.++++.-+..++..+.|.++++||+|+.. ..
T Consensus        57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~--Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~  133 (301)
T 1ega_A           57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIF--VVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKA  133 (301)
T ss_dssp             EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEE--EEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHH
T ss_pred             eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEE--EEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHH
Confidence            47889999998         344  2445667888877  999988 888887655555556789999999999987 55


Q ss_pred             HHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         83 VLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        83 ~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      .+.+.++++.+.+   ++.   ..+-.+..+.+.++++...+...+.
T Consensus       134 ~~~~~l~~l~~~~---~~~---~~i~iSA~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          134 DLLPHLQFLASQM---NFL---DIVPISAETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             HHHHHHHHHHTTS---CCS---EEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhc---CcC---ceEEEECCCCCCHHHHHHHHHHhCC
Confidence            6656656554421   111   1122334556677777777665443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.07  E-value=1.5e-06  Score=74.12  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=27.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      |+.++|+||||||||||+++|+ +.+    |.+.++.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~-~~~----g~~~i~~   60 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVA-DET----GLEFAEA   60 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH-HHH----CCEEEEG
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh----CCeEEcc
Confidence            7889999999999999999999 776    6666653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.06  E-value=1.3e-06  Score=90.41  Aligned_cols=42  Identities=21%  Similarity=0.215  Sum_probs=35.3

Q ss_pred             chhHHHHHHHHHHcCC-C--cEEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138         52 VGMTKEHLGLALALSV-P--VFVVV----TKIDMCPPNVLQDTLKLLVR   93 (320)
Q Consensus        52 ~~~t~~~l~l~~~l~i-~--~~v~l----nk~Dl~~~~~le~~l~~~~~   93 (320)
                      .+..+.+++||++|.. |  .++++    +.+|-.+.+||.+.+.++++
T Consensus       506 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~  554 (972)
T 2r6f_A          506 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD  554 (972)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh
Confidence            3577789999999998 4  57777    99999999999999888864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.05  E-value=1e-06  Score=75.20  Aligned_cols=35  Identities=29%  Similarity=0.221  Sum_probs=30.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee--eec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA--RQK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i--~~~  237 (320)
                      .|+.++|+|||||||||+++.|+ +.+. ..|.+  .++
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La-~~l~-~~G~~~~~~d   60 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALN-QMLY-QKGKLCYILD   60 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH-HHHH-HTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH-HHHH-hcCceEEEec
Confidence            37889999999999999999999 8887 56776  554

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.04  E-value=9.8e-06  Score=67.99  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc-----------CCCcEEEEeCCCCC
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL-----------SVPVFVVVTKIDMC   79 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l-----------~i~~~v~lnk~Dl~   79 (320)
                      ..+.++|+||+++|.  .-.-...+|.+++  |++++++.. ....+.+.-....           ++|+++|+||+|+.
T Consensus        63 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  140 (199)
T 4bas_A           63 VAFTVFDMGGAKKFRGLWETYYDNIDAVIF--VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA  140 (199)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGCTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred             EEEEEEECCCCHhHHHHHHHHHhcCCEEEE--EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence            347889999999999  2233567888877  999997542 2222333222222           77999999999998


Q ss_pred             ChhHHHHH
Q psy15138         80 PPNVLQDT   87 (320)
Q Consensus        80 ~~~~le~~   87 (320)
                      .....+++
T Consensus       141 ~~~~~~~~  148 (199)
T 4bas_A          141 GAKTAAEL  148 (199)
T ss_dssp             TCCCHHHH
T ss_pred             CCCCHHHH
Confidence            66333333

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.03  E-value=2.2e-06  Score=73.34  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=25.1

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +.|+.++|+||||||||||++.|. +.++
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~-~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALL-SQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHH-HHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHH-hhCC
Confidence            458889999999999999999999 7765

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.03  E-value=1.4e-06  Score=81.43  Aligned_cols=33  Identities=33%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHAR  235 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~  235 (320)
                      |..++|+||||||||||+++|+ |.++|. .|.+.
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~-g~~~~~~~~~i~  156 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAML-DYLNNTKYHHIL  156 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHH-HHHHHHCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hcccCCCCcEEE
Confidence            7799999999999999999999 999887 45554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.02  E-value=1.8e-06  Score=79.38  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=30.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC--------CCCCceeeecc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL--------DNGRGHARQKL  238 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l--------~~~~G~i~~~~  238 (320)
                      .++|+|+||||||||++.|. |..        .|+.|++.+++
T Consensus         6 v~~i~G~~GaGKTTll~~l~-~~~~~~~~aVi~~d~G~i~idg   47 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHIL-NEQHGYKIAVIENEFGEVSVDD   47 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHH-HSCCCCCEEEECSSCCSCCEEE
T ss_pred             EEEEEecCCCCHHHHHHHHH-hhcCCCcEEEEEecCcccCccH
Confidence            48999999999999999999 887        78899998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.01  E-value=1.2e-06  Score=79.34  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=31.3

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eeee
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HARQ  236 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~~  236 (320)
                      .|+.++|+||||||||||++.|+ |.+.|.+| .+.+
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia-~~~~~~~G~~v~~   69 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQA-LQWGTAMGKKVGL   69 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHH-HHHHHTSCCCEEE
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH-HHHHHHcCCeEEE
Confidence            49999999999999999999999 99988877 5644

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.01  E-value=5.8e-06  Score=69.23  Aligned_cols=108  Identities=14%  Similarity=0.105  Sum_probs=61.5

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH-----cCCCcEEEEeCCCCCChhHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA-----LSVPVFVVVTKIDMCPPNVL   84 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~-----l~i~~~v~lnk~Dl~~~~~l   84 (320)
                      ..+.++|+||+++|.  .-.....+|.+++  |++++++.. ...++.+ .+.+.     .++|+++|+||+|+......
T Consensus        67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  144 (190)
T 2h57_A           67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIF--VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS  144 (190)
T ss_dssp             CEEEEEEECCSTTTGGGGGGGGGGCSEEEE--EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH
Confidence            457899999999998  2333566788877  999987421 2222233 33333     36789999999999765433


Q ss_pred             HHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138         85 QDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~  127 (320)
                      ++..+.+.    ...+......+. ....+.+..+++...+.+.
T Consensus       145 ~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  184 (190)
T 2h57_A          145 VKVSQLLC----LENIKDKPWHICASDAIKGEGLQEGVDWLQDQ  184 (190)
T ss_dssp             HHHHHHHT----GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHhC----hhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence            33322221    000111111122 2345556677776666554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.01  E-value=4.6e-06  Score=78.25  Aligned_cols=21  Identities=43%  Similarity=0.596  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHhcCc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      ++++|++|+|||||++.|. |.
T Consensus       163 i~~vG~~nvGKStliN~L~-~~  183 (368)
T 3h2y_A          163 VYVVGCTNVGKSTFINRMI-KE  183 (368)
T ss_dssp             EEEEEBTTSSHHHHHHHHH-HH
T ss_pred             EEEecCCCCChhHHHHHHH-hh
Confidence            7999999999999999998 65

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.00  E-value=7.5e-06  Score=68.36  Aligned_cols=110  Identities=12%  Similarity=-0.051  Sum_probs=62.5

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.++|+|||++|.  .-.....+|.+++  |++++++.. ....+.+ .+.+.   .++|+++|+||+|+.+....++
T Consensus        66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  143 (189)
T 2x77_A           66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY--VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAE  143 (189)
T ss_dssp             EEEEEEEECCSSSSCCCCSSSSTTCCEEEE--EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhhcCCEEEE--EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHH
Confidence            357889999999998  2333567788877  999987542 2222223 23222   3568889999999976533333


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHH
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      +.+.+...    .+........ ....+.+..+++...+.+.+.
T Consensus       144 ~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  183 (189)
T 2x77_A          144 IAEQLGVS----SIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR  183 (189)
T ss_dssp             HHHHTTGG----GCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHhChh----hccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence            32222111    1111111222 233555667777766665543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.00  E-value=2.5e-06  Score=73.30  Aligned_cols=28  Identities=14%  Similarity=0.242  Sum_probs=25.5

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      .|+.++|+||||||||||++.|+ +.+++
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~-~~~~~   34 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVF-KDPET   34 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHH-HSTTC
T ss_pred             CCcEEEEECcCCCCHHHHHHHHH-hhCCC
Confidence            37889999999999999999999 88875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.00  E-value=5.2e-06  Score=75.72  Aligned_cols=104  Identities=14%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             ceEEEeCCCcch--------hh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHc--CCCcEEEEeCCCCCChh
Q psy15138         15 AASVFETRIHER--------DD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL--SVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        15 ~~~~~d~pgh~~--------~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~   82 (320)
                      .+.|+|+||+.+        |.  .......+|.+++  |++++.+.....+.-+..++..  ++|.++++||+|+.+..
T Consensus        56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~--VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~  133 (301)
T 1wf3_A           56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVW--VVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP  133 (301)
T ss_dssp             EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEE--EEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred             EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEE--EEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence            477899999987        44  2223456788877  9999998877766555566666  78999999999998654


Q ss_pred             H-HHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         83 V-LQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        83 ~-le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      . +.+.++++        +...+ .+-.+..+.++++++...+...+.
T Consensus       134 ~~~~~~~~~~--------~~~~~-~~~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          134 EEAMKAYHEL--------LPEAE-PRMLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             HHHHHHHHHT--------STTSE-EEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHh--------cCcCc-EEEEeCCCCCCHHHHHHHHHHhcc
Confidence            4 43333332        11111 111334667788888777765543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.00  E-value=1.3e-06  Score=77.42  Aligned_cols=41  Identities=22%  Similarity=0.106  Sum_probs=31.8

Q ss_pred             cccCCccCcEEEEEcCCCChHHHHHHHHhc--CcCCCCCceee
Q psy15138        195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTH--GELDNGRGHAR  235 (320)
Q Consensus       195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~--G~l~~~~G~i~  235 (320)
                      ++.....|++++|+|||||||||++++|+.  |+..+++|.+.
T Consensus        20 ~~~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           20 RPHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             ---CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            333344588999999999999999999974  66677888876

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.99  E-value=2.9e-06  Score=80.83  Aligned_cols=49  Identities=24%  Similarity=0.209  Sum_probs=33.7

Q ss_pred             eeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      +.+.++.+.|    +...++++++|.   ++|+||||||||||+++|+ |...+..|
T Consensus        12 l~~~~l~~~y----~~~~vl~~vsf~---I~lvG~sGaGKSTLln~L~-g~~~~~~~   60 (418)
T 2qag_C           12 VGFANLPNQV----YRKSVKRGFEFT---LMVVGESGLGKSTLINSLF-LTDLYSPE   60 (418)
T ss_dssp             ---CCCCCCT----TTTTCC-CCCEE---EEEECCTTSSHHHHHHHHT-TCCCCCCC
T ss_pred             EEEEecceeE----CCEEEecCCCEE---EEEECCCCCcHHHHHHHHh-CCCCCCCC
Confidence            4555555444    334567777763   7999999999999999999 98875444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.99  E-value=1.6e-06  Score=76.38  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhc--CcCCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~--G~l~~~~G~i~~~  237 (320)
                      +++++|+||||||||||+++|+.  |+..|+.|.+.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~   64 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE   64 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence            57899999999999999999974  6777888887654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.98  E-value=1.7e-06  Score=73.88  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      +.+++|+|+||||||||++.|. +.+++..|.+...
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~-~~~~~~~~~v~~~   56 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLS-QTLREQGISVCVF   56 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HHHhhcCCeEEEe
Confidence            6779999999999999999999 9888777877553

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.98  E-value=5.7e-06  Score=69.10  Aligned_cols=65  Identities=11%  Similarity=0.037  Sum_probs=45.7

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHH---------cCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALA---------LSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~---------l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||++|.  .-.....+|.+++  |++++++.....++.+.-+..         .++|.++|.||+|+...
T Consensus        75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           75 RFHLYTVPGQVFYNASRKLILRGVDGIVF--VADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             EEEEEECCSCCSCSHHHHHHTTTCCEEEE--EEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             EEEEEeCCChHHHHHHHHHHHhcCCEEEE--EEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence            37888999999998  2223456788877  999997665555544422211         46688999999999754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.98  E-value=2.7e-06  Score=79.23  Aligned_cols=43  Identities=16%  Similarity=0.121  Sum_probs=34.0

Q ss_pred             cccCCccCcEEEEEcCCCChHHHHHHHHhcCcC--CCCC----ce-eeecc
Q psy15138        195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTHGEL--DNGR----GH-ARQKL  238 (320)
Q Consensus       195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~----G~-i~~~~  238 (320)
                      +......|+.++|+||||||||||++.|+ +..  +|+.    |. ++++.
T Consensus       124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~-~~~~~~~~~Gg~~G~vi~i~~  173 (349)
T 1pzn_A          124 LGGGIETQAITEVFGEFGSGKTQLAHTLA-VMVQLPPEEGGLNGSVIWIDT  173 (349)
T ss_dssp             HTSSEESSEEEEEEESTTSSHHHHHHHHH-HHTTSCGGGTSCSCEEEEEES
T ss_pred             hcCCCCCCeEEEEECCCCCCHHHHHHHHH-HHhccchhcCCCCCeEEEEeC
Confidence            44444459999999999999999999999 887  5655    56 66654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.95  E-value=3.4e-06  Score=73.63  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=28.3

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .|+.++|.|+||||||||+++|+ +.    .|.+.+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~-~~----~g~v~~~~   51 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFE-KY----KNDICLLT   51 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTG-GG----TTTEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH-hc----cCCeEEEe
Confidence            48889999999999999999999 87    57676653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.94  E-value=9.1e-06  Score=67.58  Aligned_cols=111  Identities=10%  Similarity=-0.060  Sum_probs=64.0

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.++|+|||++|.  .-.-...+|.+++  |++++++.. ...++.+ .+.+.   .++|.++|+||+|+.+....++
T Consensus        62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  139 (186)
T 1ksh_A           62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIW--VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA  139 (186)
T ss_dssp             EEEEEEEECCSHHHHTTGGGGCTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHH
Confidence            457889999999998  3333567788877  999987542 2222233 33332   4568899999999976543333


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHc
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDN  130 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~  130 (320)
                      ..+.+..    ..+........ ....+.+..+++...+.+.+.+
T Consensus       140 ~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          140 IQEALEL----DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             HHHHTTG----GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHhCh----hhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            3222211    00111111222 2335566777777777666543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.94  E-value=3.6e-06  Score=70.27  Aligned_cols=30  Identities=27%  Similarity=0.223  Sum_probs=26.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      .++|+||||||||||+++|. +++.+..|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~-~~l~~~~~~~   57 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAIL-FVLGGLSAKA   57 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHH-HHTTCCCTGG
T ss_pred             cEEEECCCCCCHHHHHHHHH-HHHcCCcccc
Confidence            78999999999999999999 8887766643

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.93  E-value=1.6e-06  Score=82.16  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      | +++|+||||||||||+++|. +++.
T Consensus        61 G-~~~lvG~NGaGKStLl~aI~-~l~~   85 (415)
T 4aby_A           61 G-FCAFTGETGAGKSIIVDALG-LLLG   85 (415)
T ss_dssp             S-EEEEEESHHHHHHHHTHHHH-HHTT
T ss_pred             C-cEEEECCCCCCHHHHHHHHH-HHhC
Confidence            7 99999999999999999997 6654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.91  E-value=1.9e-06  Score=87.98  Aligned_cols=42  Identities=21%  Similarity=0.029  Sum_probs=34.7

Q ss_pred             eccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCC-CCCceee
Q psy15138        193 KRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD-NGRGHAR  235 (320)
Q Consensus       193 ~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~-~~~G~i~  235 (320)
                      .+++++++.|++++|+||||||||||||+|+ |+.. +..|.+.
T Consensus       567 ~vl~disl~g~i~~I~GpNGsGKSTlLr~ia-gl~~~~~~G~~v  609 (765)
T 1ewq_A          567 FVPNDLEMAHELVLITGPNMAGKSTFLRQTA-LIALLAQVGSFV  609 (765)
T ss_dssp             CCCEEEEESSCEEEEESCSSSSHHHHHHHHH-HHHHHHTTTCCB
T ss_pred             eEeeeccCCCcEEEEECCCCCChHHHHHHHH-hhhhhcccCcee
Confidence            4566666779999999999999999999999 9864 6777653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.90  E-value=3.7e-06  Score=69.48  Aligned_cols=26  Identities=35%  Similarity=0.473  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +..++|+|||||||||++++|+ +.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La-~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLA-QQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHH-HHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHH-HHhC
Confidence            4569999999999999999999 7764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.88  E-value=5.1e-06  Score=70.02  Aligned_cols=25  Identities=36%  Similarity=0.519  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      +++|+|+||||||||++.++ |...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~-~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFT-RNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHH-HSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHh-cCCCC
Confidence            58999999999999999999 77654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.88  E-value=8.7e-06  Score=67.95  Aligned_cols=109  Identities=10%  Similarity=0.004  Sum_probs=58.7

Q ss_pred             CceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.++|+||+++|..  -.-...+|.+++  |++++++.. ....+.+ .+.+.   .++|+++|+||+|+......++
T Consensus        60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~  137 (187)
T 1zj6_A           60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIV--VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE  137 (187)
T ss_dssp             EEEEEEECCC----CGGGHHHHTTCCEEEE--EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhcCCCEEEE--EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH
Confidence            3578899999999982  222456788877  999987642 2223333 33332   4668899999999976433333


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHH
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLI  128 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~  128 (320)
                      ..+.+...    .+........ ....+.+..+++...+.+..
T Consensus       138 i~~~~~~~----~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          138 ISQFLKLT----SIKDHQWHIQACCALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             HHHHHTGG----GCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHhChh----hhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence            32222211    0111111222 33456667777777766554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.87  E-value=4.1e-06  Score=68.32  Aligned_cols=35  Identities=29%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc--eeeec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG--HARQK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G--~i~~~  237 (320)
                      .|+.++|+||||+|||||+++|+ +.+.+ +|  .+.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~-~~~~~-~g~~~~~~~   71 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWV-AQALE-AGKNAAYID   71 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHH-HHHHT-TTCCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH-HHHHh-cCCcEEEEc
Confidence            68889999999999999999999 88876 46  44443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.86  E-value=3.2e-06  Score=72.85  Aligned_cols=36  Identities=11%  Similarity=0.013  Sum_probs=31.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      .|+.++|+||||||||||++.|+ +...+..|.+.+.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~-~~~~~~~~~v~~~   57 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFI-AKGLRDGDPCIYV   57 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-HHHHHHTCCEEEE
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHH-HHHHHCCCeEEEE
Confidence            48999999999999999999999 8877777777654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.86  E-value=6e-06  Score=75.96  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=26.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCC--CCCcee
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELD--NGRGHA  234 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~--~~~G~i  234 (320)
                      +++|+||||||||||+++|. +++.  |+.|.+
T Consensus        94 iigI~GpsGSGKSTl~~~L~-~ll~~~~~~~~v  125 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLK-ALLSRWPDHPNV  125 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HHHTTSTTCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHH-HHhcccCCCCeE
Confidence            58999999999999999999 9887  456654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.85  E-value=6.4e-06  Score=68.27  Aligned_cols=32  Identities=19%  Similarity=0.139  Sum_probs=26.5

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      .|+.++|+|||||||||+++.|+ +.+    |.+.++
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~-~~~----g~~~i~   38 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVA-HQL----HAAFLD   38 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHH-HHH----TCEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH-Hhh----CcEEEe
Confidence            47889999999999999999999 764    555554

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.81  E-value=1.3e-05  Score=64.91  Aligned_cols=108  Identities=9%  Similarity=-0.041  Sum_probs=59.9

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.++|+|||++|.  .-.-...+|.+++  |++++++.. ....+.+ .+...   .++|++++.||+|+......++
T Consensus        44 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  121 (164)
T 1r8s_A           44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF--VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE  121 (164)
T ss_dssp             CEEEEEECCCCGGGHHHHHHHTTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEEEEcCCChhhHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHH
Confidence            458899999999998  2223566788877  999987532 1122222 22222   2568889999999976533333


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~  127 (320)
                      +.+++...    .+........ ..+.+.+..+++...+...
T Consensus       122 ~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  159 (164)
T 1r8s_A          122 ITDKLGLH----SLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (164)
T ss_dssp             HHHHTTGG----GCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHhCcc----cccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence            32222111    1111111122 2335556677766666544

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.80  E-value=3.1e-06  Score=70.69  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=27.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCce
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGH  233 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~  233 (320)
                      |+.++|+||||+|||||++.|+ +.+.|..|.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~-~~~~~~~g~   68 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATL-KAIYEKKGI   68 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHH-HHHHHHSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-HHHHHHcCC
Confidence            6779999999999999999999 888766673

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.79  E-value=7.5e-06  Score=78.87  Aligned_cols=108  Identities=16%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             ceEEEeCCC----------cchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC-
Q psy15138         15 AASVFETRI----------HERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP-   80 (320)
Q Consensus        15 ~~~~~d~pg----------h~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~-   80 (320)
                      .+.++|+||          +|+|.   .+.....+|.+++  |+++.++...+..+.+..+...+.|.++|+||+|+.+ 
T Consensus       244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ll--viD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~  321 (456)
T 4dcu_A          244 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAV--VLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK  321 (456)
T ss_dssp             EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred             eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEE--EEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence            478899999          68887   3334567788888  9999999999999999999989999999999999974 


Q ss_pred             -hhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         81 -PNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        81 -~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                       ....++..+.+...+...  ...++ +..+..+..+++++...+.+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~SA~~g~gv~~l~~~i~~~  366 (456)
T 4dcu_A          322 DESTMKEFEENIRDHFQFL--DYAPI-LFMSALTKKRIHTLMPAIIKA  366 (456)
T ss_dssp             CSSHHHHHHHHHHHHCGGG--TTSCE-EECCTTTCTTGGGHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccC--CCCCE-EEEcCCCCcCHHHHHHHHHHH
Confidence             334555555665543321  11121 112334445555555554443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.79  E-value=3.3e-05  Score=69.10  Aligned_cols=59  Identities=14%  Similarity=0.220  Sum_probs=43.0

Q ss_pred             cchhhhccce-ecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcC
Q psy15138         36 ADHSMLQSKV-GANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKS   97 (320)
Q Consensus        36 ~d~~~l~~vv-~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~   97 (320)
                      +|.+++  ++ ++..+..+...+.+..+.. ++|.++|+||+|+.+...++..++++.+.+..
T Consensus       116 ~~~~l~--~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~  175 (274)
T 3t5d_A          116 VQCCLY--FIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE  175 (274)
T ss_dssp             CCEEEE--EECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEE--EecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH
Confidence            445544  55 5556888877776655555 78999999999999888888777777776543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.78  E-value=1e-05  Score=76.42  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcC------------cCCCCCceeeecc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHG------------ELDNGRGHARQKL  238 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G------------~l~~~~G~i~~~~  238 (320)
                      |.+++|+|+||+|||||+++|+ |            ..+|..|.+.+..
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Lt-g~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAIT-KSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHH-HSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-CCCcccccCCCceeecceeeeeeeCC
Confidence            8889999999999999999999 8            5568888887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.78  E-value=4.6e-06  Score=79.91  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             ceEEEeCCCc----------chhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIH----------ERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh----------~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||          |+|.   .+.....+|.+++  |+++++|...+..+.+..+...+.|+++++||+|+.+.
T Consensus       224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ll--v~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~  301 (436)
T 2hjg_A          224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAV--VLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK  301 (436)
T ss_dssp             EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred             EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEE--EEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence            4788999999          6665   3344567888888  99999999999988888888888999999999999754


Q ss_pred             h--HHHHHHHHHHHhh
Q psy15138         82 N--VLQDTLKLLVRIL   95 (320)
Q Consensus        82 ~--~le~~l~~~~~~l   95 (320)
                      .  ..++..+++...+
T Consensus       302 ~~~~~~~~~~~~~~~l  317 (436)
T 2hjg_A          302 DESTMKEFEENIRDHF  317 (436)
T ss_dssp             CTTHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHhc
Confidence            2  2445555555543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.77  E-value=1e-05  Score=77.23  Aligned_cols=105  Identities=18%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             ceEEEeCCCcchhhcc---------CCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHH
Q psy15138         15 AASVFETRIHERDDDL---------PEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQ   85 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~---------~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le   85 (320)
                      .+.++|+|||++|-.+         .....+|.+++  |+++  +...++++.+..++..++|.++|+||+|+.+.... 
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vll--VvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-  158 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGIL--VTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-  158 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEE--ECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEE--EEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-
Confidence            6889999999988621         12445788877  8988  78889999999999999999999999999765433 


Q ss_pred             HHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138         86 DTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG  131 (320)
Q Consensus        86 ~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~  131 (320)
                      +..+++.+   ...+   ++ +..+..+.+.++++...+.+.+.+.
T Consensus       159 ~~~~~l~~---~~g~---~v-~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          159 ELKGLYES---RYEA---KV-LLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             HHHHHSSC---CTTC---CC-CCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             HHHHHHHH---HcCC---CE-EEEECCCCCCHHHHHHHHHHhhhhh
Confidence            22222221   1111   11 1123355566777777776665443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.77  E-value=3.5e-06  Score=72.85  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC---CCCCceeee
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL---DNGRGHARQ  236 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l---~~~~G~i~~  236 (320)
                      .+++|+|||||||||++++|+ +.+   .++.|.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~-~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMA-EALQWHLLDSGAIYR   41 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH-HHHTCEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HHhCCCcccCcceee
Confidence            469999999999999999999 765   566777654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.76  E-value=1.1e-05  Score=67.77  Aligned_cols=109  Identities=16%  Similarity=0.090  Sum_probs=61.9

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch--hHHHHHHHHHHc--CCCcEEEEeCCCCCCh---hHHHH
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALAL--SVPVFVVVTKIDMCPP---NVLQD   86 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~---~~le~   86 (320)
                      +.++|+||+++|.  .-.-...+|.+++  |++++++..-  .....+...+..  ++|.++|.||+|+...   ....+
T Consensus        73 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  150 (194)
T 3reg_A           73 LHLWDTAGQEEYDRLRPLSYADSDVVLL--CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQ  150 (194)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHH
T ss_pred             EEEEECCCcHHHHHHhHhhccCCcEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHH
Confidence            5788999999998  2333556788877  9999874321  113334444433  4688899999998642   11111


Q ss_pred             HHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCc
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGR  132 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~  132 (320)
                      ...++...+   .+..   -+-....+.+..+++...+.+.+.+..
T Consensus       151 ~~~~~~~~~---~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          151 EGDDLCQKL---GCVA---YIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHH---TCSC---EEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhc---CCCE---EEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence            222222221   1111   111334556667777777766655443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.76  E-value=2.6e-05  Score=64.37  Aligned_cols=110  Identities=12%  Similarity=0.008  Sum_probs=59.9

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHH-HH
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVL-QD   86 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~l-e~   86 (320)
                      .+.++|+||+++|..  -.-...+|.+++  |+++++...  ......-.+...   .++|+++|.||+|+...... .+
T Consensus        55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  132 (181)
T 3t5g_A           55 HLQLVDTAGQDEYSIFPQTYSIDINGYIL--VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE  132 (181)
T ss_dssp             EEEEEECCCCCTTCCCCGGGTTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHH
T ss_pred             EEEEEeCCCchhhhHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHH
Confidence            357899999999982  223446777777  999886321  111111133333   35688999999998532211 11


Q ss_pred             HHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCcc
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRG  133 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~~  133 (320)
                      ...++...   ..+   ++ +-....+.+..+++...+.+.+.+..+
T Consensus       133 ~~~~~~~~---~~~---~~-~~~Sa~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          133 EGKALAES---WNA---AF-LESSAKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHH---TTC---EE-EECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHH---hCC---cE-EEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            22222221   112   11 113446677788887777776655443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.75  E-value=2.4e-05  Score=63.01  Aligned_cols=105  Identities=14%  Similarity=0.047  Sum_probs=58.1

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHH-HHc---CCCcEEEEeCCCCCChhHHHHHH
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLA-LAL---SVPVFVVVTKIDMCPPNVLQDTL   88 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~-~~l---~i~~~v~lnk~Dl~~~~~le~~l   88 (320)
                      +.++|+|||++|.  .-.-...+|.+++  |+++++... ...++.+..+ ...   ++|.++++||+|+.+.....+..
T Consensus        53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  130 (166)
T 2ce2_X           53 LDILDTAGQEEYSAMRDQYMRTGEGFLC--VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQA  130 (166)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHH
T ss_pred             EEEEECCCchhhhHHHHHhhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHH
Confidence            6788999999987  2222345677777  888876432 1223333222 222   67999999999987533222223


Q ss_pred             HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      .++...+   .+   +. +.....+.+.++++...+.+++.
T Consensus       131 ~~~~~~~---~~---~~-~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          131 QDLARSY---GI---PY-IETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HHHHHHH---TC---CE-EEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHc---CC---eE-EEecCCCCCCHHHHHHHHHHHHH
Confidence            3333221   11   11 11233555667777766665543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.74  E-value=4.1e-05  Score=63.18  Aligned_cols=66  Identities=9%  Similarity=-0.040  Sum_probs=41.5

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHH-HHH---HcCCCcEEEEeCCCCCCh
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LAL---ALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~---~l~i~~~v~lnk~Dl~~~   81 (320)
                      ..+.++|+||+++|.  .......+|.+++  |++++++.. ....+.+. +.+   ..++|.++++||+|+...
T Consensus        62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIF--VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             EEEEEEEEC----CCTTGGGTTTTEEEEEE--EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence            457889999999988  3444667888877  999987532 22333332 222   245688899999999764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.74  E-value=7.8e-06  Score=80.56  Aligned_cols=36  Identities=31%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eee-ec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HAR-QK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~-~~  237 (320)
                      .|+.++|+|+||||||||+++|+ +.+.|.+| .+. ++
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La-~~L~~~~G~~i~~lD  405 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALA-ARLMEMGGRCVTLLD  405 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHH-HHHHTTCSSCEEEES
T ss_pred             cceEEEEECCCCChHHHHHHHHH-HhhcccCCceEEEEC
Confidence            48999999999999999999999 99998886 564 44

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.73  E-value=5.1e-05  Score=63.89  Aligned_cols=66  Identities=9%  Similarity=-0.052  Sum_probs=44.1

Q ss_pred             CceEEEeCCCcchhhcc-----CCCCccchhhhccceecCCCCchhHHHHH-HHHHH-----cCCCcEEEEeCCCCCChh
Q psy15138         14 NAASVFETRIHERDDDL-----PEASPADHSMLQSKVGANAGIVGMTKEHL-GLALA-----LSVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~~-----~~~~~~d~~~l~~vv~a~~g~~~~t~~~l-~l~~~-----l~i~~~v~lnk~Dl~~~~   82 (320)
                      -.+.++|+||+++|..+     .-...+|.+++  |+++++.... ..+++ .....     -++|+++|.||+|+.+.+
T Consensus        69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~-~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~  145 (196)
T 3llu_A           69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIY--VIDAQDDYME-ALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDD  145 (196)
T ss_dssp             CCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEE--EEETTSCCHH-HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH
T ss_pred             eEEEEEECCCCHHHHhhhhhcccccccCCEEEE--EEECCCchHH-HHHHHHHHHHHHHhcCCCCcEEEEEeccccCchh
Confidence            45889999999999732     22445677777  9999986322 22222 22222     256888889999998754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.73  E-value=1.8e-05  Score=68.78  Aligned_cols=44  Identities=11%  Similarity=0.006  Sum_probs=33.6

Q ss_pred             cccCCccCcEEEEEcCCCChHHHHHHHHhcC--cCCC-----CCceeeeccc
Q psy15138        195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTHG--ELDN-----GRGHARQKLF  239 (320)
Q Consensus       195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G--~l~~-----~~G~i~~~~~  239 (320)
                      +......|+.++|+||||||||||++.|+ +  .++|     +.|.+.+...
T Consensus        17 l~ggi~~G~~~~i~G~~GsGKTtl~~~l~-~~~~~~~~~g~~~~~~~~i~~~   67 (243)
T 1n0w_A           17 LQGGIETGSITEMFGEFRTGKTQICHTLA-VTCQLPIDRGGGEGKAMYIDTE   67 (243)
T ss_dssp             TTTSEETTSEEEEECCTTSSHHHHHHHHH-HHTTSCGGGTCCSSEEEEEESS
T ss_pred             hcCCCcCCeEEEEECCCCCcHHHHHHHHH-HHHhCchhcCCCCCeEEEEECC
Confidence            33344459999999999999999999999 8  4554     5667776543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.70  E-value=7.3e-05  Score=62.49  Aligned_cols=65  Identities=17%  Similarity=0.108  Sum_probs=45.2

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHH-HHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTK-EHLGLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~-~~l~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||++|.  .-.-...+|.+++  |++++++..- ..+ ..+..++..  ++|+++|.||+|+...
T Consensus        67 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLI--CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EEEEECCCCSSSSTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred             EEEEEECCCCcchhHHHHHhcCCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence            46788999999998  3333566788877  9999874321 122 344444444  6799999999999764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.68  E-value=1.3e-05  Score=67.79  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|+||||||||++.|+ |..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~-~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFT-RNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHH-HSC
T ss_pred             EEEEECcCCCCHHHHHHHHh-cCC
Confidence            58999999999999999999 764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.68  E-value=1.7e-05  Score=65.28  Aligned_cols=64  Identities=14%  Similarity=0.075  Sum_probs=43.4

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..+  .....+|.+++  |++++++.. ...++.+..+...   ++|+++++||+|+.+
T Consensus        62 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  131 (181)
T 2efe_B           62 KFEIWDTAGQERYHSLAPMYYRGAAAAII--VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD  131 (181)
T ss_dssp             EEEEEECCCSGGGGGGTHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred             EEEEEeCCCChhhhhhhHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence            5788999999999822  22345677777  999987443 2334444444443   557888999999964

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.68  E-value=1.2e-05  Score=67.22  Aligned_cols=63  Identities=16%  Similarity=0.085  Sum_probs=43.4

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchh-HHHHH-HHHHHcCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGM-TKEHL-GLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l-~l~~~l~i~~~v~lnk~Dl   78 (320)
                      ..+.++|+|||++|.  .......+|.+++  |++++.+..-. .++.+ .+....++|+++|+||+|+
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~  159 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIV--VFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK  159 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEE--EEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence            468899999999998  2222446677777  99998754322 22233 4444456788999999994

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.67  E-value=7.9e-05  Score=62.96  Aligned_cols=67  Identities=13%  Similarity=0.133  Sum_probs=46.2

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCChhH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPPNV   83 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~   83 (320)
                      .+.++|+||+++|.  .-.....+|.+++  |++++....  ......+..++..  ++|+++|+||+|+.+...
T Consensus        74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  146 (201)
T 2gco_A           74 ELALWDTAGQEDYDRLRPLSYPDTDVILM--CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH  146 (201)
T ss_dssp             EEEEECCCCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred             EEEEEECCCchhHHHHHHHhcCCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence            47788999999998  2333567788877  998886322  2223344444444  679999999999976543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.67  E-value=3.5e-05  Score=63.34  Aligned_cols=64  Identities=14%  Similarity=0.071  Sum_probs=39.1

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++++.. ...++.+..+..   .++|.++++||+|+.+
T Consensus        61 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  130 (180)
T 2g6b_A           61 KLQMWDTAGQERFRSVTHAYYRDAHALLL--LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH  130 (180)
T ss_dssp             EEEEEECCCC--------CCGGGCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred             EEEEEeCCCcHHHHHHHHHHccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence            47788999999998  3334556777777  999987432 122333433333   3568889999999974

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.67  E-value=7.6e-05  Score=62.08  Aligned_cols=63  Identities=13%  Similarity=-0.020  Sum_probs=36.3

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH----cCCCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA----LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~----l~i~~~v~lnk~Dl~~   80 (320)
                      +.++|+||+++|.  .-.....+|.+++  |++++++..- ...+.+..+..    .++|.++|+||+|+.+
T Consensus        71 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           71 LDILDTAGQEEYSAMRDQYMRTGEGFLC--VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEECCC-----------CTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EEEEECCChHHHHHHHHHhhCcCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence            7789999999998  3333556777777  9998874321 12222322222    2679999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.67  E-value=4.9e-05  Score=67.79  Aligned_cols=76  Identities=11%  Similarity=0.069  Sum_probs=48.6

Q ss_pred             ceEEEeCCCcchhhccC-----------CCCccchhhhccceecCC-CCchhHHHHHHHH-HHcC----CCcEEEEeCCC
Q psy15138         15 AASVFETRIHERDDDLP-----------EASPADHSMLQSKVGANA-GIVGMTKEHLGLA-LALS----VPVFVVVTKID   77 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~-----------~~~~~d~~~l~~vv~a~~-g~~~~t~~~l~l~-~~l~----i~~~v~lnk~D   77 (320)
                      .+.|+|+||+++|..+.           -...+|.+++  |++++. .......+.+..+ ...+    .|.++|+||+|
T Consensus        88 ~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~--v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D  165 (270)
T 1h65_A           88 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLY--VDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ  165 (270)
T ss_dssp             EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEE--EEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred             EEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEE--EEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence            48899999998876211           1336888877  877765 3444444444333 3334    47889999999


Q ss_pred             CCChh--HHHHHHHHHH
Q psy15138         78 MCPPN--VLQDTLKLLV   92 (320)
Q Consensus        78 l~~~~--~le~~l~~~~   92 (320)
                      +.+++  .+++++++..
T Consensus       166 l~~~~~~~~~~~~~~~~  182 (270)
T 1h65_A          166 FSPPDGLPYDEFFSKRS  182 (270)
T ss_dssp             CCCGGGCCHHHHHHHHH
T ss_pred             cCCcCCCCHHHHHHHHH
Confidence            98654  4555554433

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.66  E-value=8.7e-06  Score=72.25  Aligned_cols=49  Identities=18%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             eeeeeec-CCCeeeeecceeccccCCc---c---CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        175 LLRQRKL-DNGLTGQYLLRKRVESQDF---L---EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       175 ~~~~~~~-~~~~~~~~~~~~~l~~~~~---~---g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .++++++ ++.|.   ....+++++++   .   |++++|+|++||||||+.++|+ +.+
T Consensus        17 ~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La-~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMA-RSL   72 (250)
T ss_dssp             ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHH-HHH
T ss_pred             ceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHH-Hhc
Confidence            5666766 66552   22344555544   3   8899999999999999999998 643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.66  E-value=4e-05  Score=62.20  Aligned_cols=106  Identities=17%  Similarity=0.106  Sum_probs=58.2

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCChhHHHHHH
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCPPNVLQDTL   88 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~~~le~~l   88 (320)
                      .+.++|+|||++|..  ......+|.+++  |++++.+.. ...++.+......   ++|.++++||+|+.......+..
T Consensus        53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~  130 (170)
T 1g16_A           53 KLQIWDTAGQERFRTITTAYYRGAMGIIL--VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG  130 (170)
T ss_dssp             EEEEECCTTGGGTSCCCHHHHTTEEEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHH
T ss_pred             EEEEEeCCCChhhhhhHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHH
Confidence            477889999999982  222456777777  999987432 1223334333332   56888999999995322212222


Q ss_pred             HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      .++...+   .+   ++ +.....+.+..+++...+.+.+.
T Consensus       131 ~~~~~~~---~~---~~-~~~Sa~~~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          131 EALAKEL---GI---PF-IESSAKNDDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             HHHHHHH---TC---CE-EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHc---CC---eE-EEEECCCCCCHHHHHHHHHHHHH
Confidence            2232211   11   11 11233455566666666655543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.65  E-value=2.9e-05  Score=66.17  Aligned_cols=78  Identities=17%  Similarity=0.125  Sum_probs=48.0

Q ss_pred             CceEEEeCCCcchhhc-c-CC-CCccchhhhccceecCCCCchhHHHHH----HHHH-----HcCCCcEEEEeCCCCCCh
Q psy15138         14 NAASVFETRIHERDDD-L-PE-ASPADHSMLQSKVGANAGIVGMTKEHL----GLAL-----ALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~-~-~~-~~~~d~~~l~~vv~a~~g~~~~t~~~l----~l~~-----~l~i~~~v~lnk~Dl~~~   81 (320)
                      -.+.++|+|||++|.. + .. ...+|.+++  |++++. ......+..    .+..     ..++|+++|.||+|+.+.
T Consensus        54 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~--v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           54 NSLTLIDLPGHESLRFQLLDRFKSSARAVVF--VVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             CEEEEEECCCCHHHHHHHHHHHGGGEEEEEE--EEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             cEEEEEECCCChhHHHHHHHHHHhhCCEEEE--EEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            3588999999999982 2 21 456777777  999876 222222221    1211     124688899999999765


Q ss_pred             hHHHHHHHHHHHh
Q psy15138         82 NVLQDTLKLLVRI   94 (320)
Q Consensus        82 ~~le~~l~~~~~~   94 (320)
                      ...+...+.+...
T Consensus       131 ~~~~~~~~~l~~~  143 (214)
T 2fh5_B          131 KSAKLIQQQLEKE  143 (214)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            5455555555443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.65  E-value=7.1e-05  Score=63.08  Aligned_cols=65  Identities=18%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHH-HHHHH------cCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA------LSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~------l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++.+..- .....+ .+...      .++|+++|+||+|+...
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  132 (207)
T 1vg8_A           58 TMQIWDTAGQERFQSLGVAFYRGADCCVL--VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  132 (207)
T ss_dssp             EEEEEEECSSGGGSCSCCGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             EEEEEeCCCcHHHHHhHHHHHhCCcEEEE--EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence            47889999999998  2333456777777  9999874321 112222 22222      36789999999999743

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.64  E-value=2.3e-05  Score=66.00  Aligned_cols=108  Identities=10%  Similarity=-0.037  Sum_probs=55.0

Q ss_pred             CceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.++|+||+++|..+  .....+|.+++  |++++++.. ....+.+ .+.+.   .++|+++|+||+|+......++
T Consensus        73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~  150 (192)
T 2b6h_A           73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF--VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSE  150 (192)
T ss_dssp             EEEEEEECC-----CTTHHHHHHTCCEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHH
Confidence            35788999999999722  22356777777  999987532 2222233 22221   2568899999999976533333


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~  127 (320)
                      +.+.+...    .+......+. ....+.+..+++...+.++
T Consensus       151 i~~~~~~~----~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  188 (192)
T 2b6h_A          151 LTDKLGLQ----HLRSRTWYVQATCATQGTGLYDGLDWLSHE  188 (192)
T ss_dssp             HHHHTTGG----GCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHhCcc----cccCCceEEEECcCCCcCCHHHHHHHHHHH
Confidence            32222211    1111111122 2345556677776666554

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.63  E-value=2.8e-05  Score=64.51  Aligned_cols=66  Identities=11%  Similarity=0.041  Sum_probs=45.1

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCCh
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~~   81 (320)
                      ..+.++|+||+++|.  ...-...+|.+++  |++++++.. ...++.+ .+.+   ..++|+++|+||+|+...
T Consensus        65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIV--VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             EEEEEEEESSSGGGTCGGGGGGTTCCEEEE--EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence            357889999999998  2333556788877  999987632 2222333 3333   246688999999999764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.63  E-value=2.1e-05  Score=65.75  Aligned_cols=107  Identities=11%  Similarity=0.062  Sum_probs=59.2

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHHH
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      .+.++|+||+++|..  ......+|.+++  |+++++... ...++.+ .+.+.   .++|+++|+||+|+......+++
T Consensus        68 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~  145 (188)
T 1zd9_A           68 TIKLWDIGGQPRFRSMWERYCRGVSAIVY--MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKEL  145 (188)
T ss_dssp             EEEEEEECCSHHHHTTHHHHHTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHH
T ss_pred             EEEEEECCCCHhHHHHHHHHHccCCEEEE--EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHH
Confidence            477899999999982  122356777777  999986432 2222233 33332   56789999999999754333333


Q ss_pred             HHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138         88 LKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        88 l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~  127 (320)
                      .+.+....    +......+. ....+.+.++++...+.+.
T Consensus       146 ~~~~~~~~----~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  182 (188)
T 1zd9_A          146 IEKMNLSA----IQDREICCYSISCKEKDNIDITLQWLIQH  182 (188)
T ss_dssp             HHHTTGGG----CCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHhChhh----hccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence            22222110    111111122 2335556677766665543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.63  E-value=0.00011  Score=62.70  Aligned_cols=68  Identities=16%  Similarity=0.068  Sum_probs=35.7

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCChhHH
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCPPNVL   84 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~l   84 (320)
                      .+.++|+||+++|..  -.....+|.+++  |++++++..-..  ...+..++..  ++|+++|.||+|+......
T Consensus        83 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  156 (214)
T 2j1l_A           83 HLHIWDTAGQDDYDRLRPLFYPDASVLLL--CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL  156 (214)
T ss_dssp             EEEEEEC---------------CEEEEEE--EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred             EEEEEECCCchhhhHHHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence            477889999999982  223557788877  999886322111  1223333322  5689999999999765443

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.62  E-value=1.7e-05  Score=81.47  Aligned_cols=33  Identities=15%  Similarity=0.070  Sum_probs=27.7

Q ss_pred             ccccCCcc--CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        194 RVESQDFL--EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       194 ~l~~~~~~--g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++++.  |++++|+||||||||||||+|+ |..
T Consensus       597 vlndisl~~~g~i~~ItGpNGsGKSTlLr~ia-gl~  631 (800)
T 1wb9_A          597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTA-LIA  631 (800)
T ss_dssp             CCEEEEECSSSCEEEEECCTTSSHHHHHHHHH-HHH
T ss_pred             eeecccccCCCcEEEEECCCCCChHHHHHHHH-HHH
Confidence            45555554  8999999999999999999999 864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.61  E-value=2.1e-05  Score=75.09  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      ++.++|+||||||||||+.+|. +++.+.+.
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~-~~~~~~~~   55 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAIS-FVLGVRSN   55 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH-HHTTC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-hhhccccc
Confidence            7889999999999999999999 98887653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.61  E-value=1.6e-05  Score=78.41  Aligned_cols=76  Identities=21%  Similarity=0.080  Sum_probs=58.2

Q ss_pred             ceEEEeCCCcch-----------hh--ccCCCCccchhhhccceecCC-CCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHER-----------DD--DLPEASPADHSMLQSKVGANA-GIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~-----------~~--~~~~~~~~d~~~l~~vv~a~~-g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.|+|+||+.+           |.  .......+|.+++  |++++. +.....++.+..++..+.|.++|+||+|+.+
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~--VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIIL--LFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE  232 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEE--EEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEE--EEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence            589999999986           43  1122345677777  999987 6777777777776666678999999999998


Q ss_pred             hhHHHHHHHHHH
Q psy15138         81 PNVLQDTLKLLV   92 (320)
Q Consensus        81 ~~~le~~l~~~~   92 (320)
                      .+.++...+.+.
T Consensus       233 ~~el~~~~~~l~  244 (550)
T 2qpt_A          233 TQQLMRVYGALM  244 (550)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            888877777664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.61  E-value=2.8e-05  Score=66.07  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=22.9

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .++++++.   +.+++|+||+||||||+.+.|+ ..+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La-~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFA-RKL   49 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHH-HHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHH-HHc
Confidence            34455554   8899999999999999999998 554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.61  E-value=2.3e-05  Score=65.38  Aligned_cols=64  Identities=14%  Similarity=0.045  Sum_probs=43.9

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++.+.. ...++.+..++..   ++|+++|+||+|+.+
T Consensus        72 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  141 (189)
T 2gf9_A           72 KLQIWDTAGQERYRTITTAYYRGAMGFLL--MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED  141 (189)
T ss_dssp             EEEEEECCSCCSSCCSGGGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEEeCCCcHHHhhhHHHhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence            47788999999998  3333556777777  999986432 2233344444443   568899999999964

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.60  E-value=2.4e-05  Score=65.35  Aligned_cols=78  Identities=12%  Similarity=0.133  Sum_probs=46.7

Q ss_pred             CceEEEeCCCcchhh-ccCC-----CCccchhhhccceecCCCCchhH--HHHH-HHHHH------cCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRIHERDD-DLPE-----ASPADHSMLQSKVGANAGIVGMT--KEHL-GLALA------LSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~-~~~~-----~~~~d~~~l~~vv~a~~g~~~~t--~~~l-~l~~~------l~i~~~v~lnk~Dl   78 (320)
                      ..+.++|+|||++|. ....     ...+|.+++  |++++.......  .+.+ .+...      -++|+++|+||+|+
T Consensus        91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A           91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF--MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE--EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE--EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence            457899999999986 1111     123677777  999883222211  1222 22221      26789999999999


Q ss_pred             CChhHHHHHHHHHHH
Q psy15138         79 CPPNVLQDTLKLLVR   93 (320)
Q Consensus        79 ~~~~~le~~l~~~~~   93 (320)
                      ......++..+.+..
T Consensus       169 ~~~~~~~~~~~~l~~  183 (193)
T 2ged_A          169 FTARPPSKIKDALES  183 (193)
T ss_dssp             TTCCCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHH
Confidence            765545555444443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.59  E-value=1.8e-05  Score=72.35  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=32.7

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .+++++|+|||||||||+++.|+ +.+.+..|.+.+..
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA-~~l~~~g~kV~lv~  139 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLA-KMFVDEGKSVVLAA  139 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHH-HHHHhcCCEEEEEc
Confidence            37889999999999999999999 99988888887653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.59  E-value=3.3e-05  Score=71.20  Aligned_cols=110  Identities=8%  Similarity=-0.042  Sum_probs=59.0

Q ss_pred             CceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc---CCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL---SVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.|+|+|||++|..  ......+|.+++  |+++++...  ........+....   ++|++||+||+|+......++
T Consensus       209 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil--V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~  286 (329)
T 3o47_A          209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF--VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE  286 (329)
T ss_dssp             EEEEEEECC-----CCSHHHHHTTEEEEEE--EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH
Confidence            3578999999999982  222456788877  999976332  2333333443333   668889999999976544444


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHH
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      +..++...    ........+. ....+...++++...+.+.+.
T Consensus       287 i~~~~~~~----~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          287 ITDKLGLH----SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             HHHHHTCT----TCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHHhchh----hhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence            43333221    1111111222 234556677777776665543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.58  E-value=1.9e-05  Score=71.83  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=30.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eeee
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HARQ  236 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~~  236 (320)
                      .|++++++||||+||||+++.|+ +.+.+.+| .+.+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA-~~l~~~~G~~V~l  139 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLA-AISMLEKHKKIAF  139 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHH-HHHHHTTCCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH-HHHHHhcCCEEEE
Confidence            47889999999999999999999 99988777 4544

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.58  E-value=8.6e-05  Score=61.50  Aligned_cols=113  Identities=18%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             ceEEEeCCC-----------cchhh-c----cCC-CCccchhhhccceecCC-----------CCchhHHHHHHHHHHcC
Q psy15138         15 AASVFETRI-----------HERDD-D----LPE-ASPADHSMLQSKVGANA-----------GIVGMTKEHLGLALALS   66 (320)
Q Consensus        15 ~~~~~d~pg-----------h~~~~-~----~~~-~~~~d~~~l~~vv~a~~-----------g~~~~t~~~l~l~~~l~   66 (320)
                      .+.++|+||           +++|. +    +.. +..++.++.  ++++..           +..++..+.+..+...+
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVL--VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD  122 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEE--EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEE--EEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence            578899999           56665 1    222 333334333  666543           12223334445555678


Q ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHcCc
Q psy15138         67 VPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDNGR  132 (320)
Q Consensus        67 i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~~~  132 (320)
                      +|.++|+||+|+....  ++..+++...+.. .+......+. .+..+.+..+++...+.+.+.+..
T Consensus       123 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          123 IPTIVAVNKLDKIKNV--QEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             CCEEEEEECGGGCSCH--HHHHHHHHHHHTC-CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             CceEEEeehHhccCcH--HHHHHHHHHHhhh-hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            8999999999997654  3333444433221 1111001112 233556667777777666555443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.57  E-value=5.3e-05  Score=64.66  Aligned_cols=70  Identities=7%  Similarity=0.106  Sum_probs=43.6

Q ss_pred             CceEEEeCCCcchhh-ccCC-----CCccchhhhccceecC---CCCchhHHHHHHHHHH------cCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRIHERDD-DLPE-----ASPADHSMLQSKVGAN---AGIVGMTKEHLGLALA------LSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~-~~~~-----~~~~d~~~l~~vv~a~---~g~~~~t~~~l~l~~~------l~i~~~v~lnk~Dl   78 (320)
                      ..+.++|+|||++|. +...     ...+|.+++  |++++   +...........+...      -++|++++.||+|+
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~--v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF--MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  132 (218)
T ss_dssp             SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE--EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEE--EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence            357899999999997 1111     123677766  99988   2222233322233322      36789999999999


Q ss_pred             CChhHHH
Q psy15138         79 CPPNVLQ   85 (320)
Q Consensus        79 ~~~~~le   85 (320)
                      .+....+
T Consensus       133 ~~~~~~~  139 (218)
T 1nrj_B          133 FTARPPS  139 (218)
T ss_dssp             TTCCCHH
T ss_pred             cccCCHH
Confidence            7654443

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.56  E-value=4e-05  Score=65.32  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +..++|+|++||||||+++.|. +.++
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~-~~~~   46 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQ-KHLP   46 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH-TTST
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HhcC
Confidence            7789999999999999999999 8753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.56  E-value=0.00021  Score=58.41  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=58.3

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHH-HHHH------cCCCcEEEEeCCCCCChhHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLG-LALA------LSVPVFVVVTKIDMCPPNVL   84 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~-l~~~------l~i~~~v~lnk~Dl~~~~~l   84 (320)
                      .+.++|+||+++|.  ...-...+|.+++  |++++.+..- ..+..+. +...      .++|.++++||+|+......
T Consensus        57 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~  134 (177)
T 1wms_A           57 TMQIWDTAGQERFRSLRTPFYRGSDCCLL--TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVS  134 (177)
T ss_dssp             EEEEEECCCCGGGHHHHGGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSC
T ss_pred             EEEEEeCCCchhhhhhHHHHHhcCCEEEE--EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccC
Confidence            57889999999998  3333456777777  9998874321 1121221 1111      45688999999999632221


Q ss_pred             HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      .+...++...  ..   ..++ +-....+.+..+++...+.+++.
T Consensus       135 ~~~~~~~~~~--~~---~~~~-~~~Sa~~~~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          135 TEEAQAWCRD--NG---DYPY-FETSAKDATNVAAAFEEAVRRVL  173 (177)
T ss_dssp             HHHHHHHHHH--TT---CCCE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--cC---CceE-EEEeCCCCCCHHHHHHHHHHHHH
Confidence            2222222221  11   1111 11233555667776666655543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.55  E-value=3.7e-05  Score=63.49  Aligned_cols=65  Identities=15%  Similarity=0.095  Sum_probs=44.1

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHH--HHHHHHHHc--CCCcEEEEeCCCCCChh
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTK--EHLGLALAL--SVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~--~~l~l~~~l--~i~~~v~lnk~Dl~~~~   82 (320)
                      +.++|+|||++|.  .-.....+|.+++  |++++++..-...  ..+..++..  ++|+++|+||+|+.+..
T Consensus        55 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  125 (186)
T 1mh1_A           55 LGLWDTAGQEDYDRLRPLSYPQTDVSLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK  125 (186)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred             EEEEECCCCHhHHHHHHHhccCCcEEEE--EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence            5588999999998  2233567788877  9999874322111  233334333  67999999999996543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.55  E-value=7.8e-05  Score=62.73  Aligned_cols=64  Identities=13%  Similarity=0.020  Sum_probs=42.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH------cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA------LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~------l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|.  ...-...+|.+++  |++++++.. ...++.+..+..      .++|+++|+||+|+..
T Consensus        74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           74 ELFLLDTAGSDLYKEQISQYWNGVYYAIL--VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             EEEEEETTTTHHHHHHHSTTCCCCCEEEE--EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             EEEEEECCCcHHHHHHHHHHHhhCcEEEE--EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            47889999999998  3344567788877  999987543 223334433333      3668899999999976

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.55  E-value=7.4e-05  Score=61.68  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=40.4

Q ss_pred             eEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHH---HHHcCCCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGL---ALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l---~~~l~i~~~v~lnk~Dl~~   80 (320)
                      +.++|+|||++|..+  .-...+|.+++  |++++++..  ......-.+   ....++|++++.||+|+..
T Consensus        68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           68 LDVLDTAGQEEFSAMREQYMRTGDGFLI--VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH  137 (183)
T ss_dssp             EEEEECCSCGGGCSSHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence            566999999999822  22345677777  999987421  111111122   2335668899999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.55  E-value=3.5e-05  Score=69.20  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ++|+||||+|||||+++|+ |.+.+  |.+.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala-~~~~~--~~i~i~g   77 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVA-NESGL--NFISVKG   77 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHH-HHTTC--EEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHH-HHcCC--CEEEEEc
Confidence            8999999999999999999 98776  6776654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.55  E-value=6.6e-05  Score=62.25  Aligned_cols=64  Identities=11%  Similarity=-0.054  Sum_probs=44.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH----cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA----LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~----l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++.+..- ..++.+..+..    .++|+++|+||+|+..
T Consensus        71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  141 (195)
T 3bc1_A           71 HLQLWDTAGLERFRSLTTAFFRDAMGFLL--LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED  141 (195)
T ss_dssp             EEEEEEECCSGGGHHHHHHTTTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred             EEEEEeCCCcHHHHHHHHHHHcCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            58889999999998  3334567788877  9999874432 22334433322    3668899999999964

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.55  E-value=2.4e-05  Score=81.47  Aligned_cols=37  Identities=19%  Similarity=0.115  Sum_probs=29.4

Q ss_pred             ccccCCcc---CcEEEEEcCCCChHHHHHHHH--------hcCcCCCCC
Q psy15138        194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVL--------THGELDNGR  231 (320)
Q Consensus       194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l--------~~G~l~~~~  231 (320)
                      +++++++.   |+.++|+||||||||||||++        . |..-|..
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~-G~~vpa~  698 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQI-GCFVPCE  698 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHH-TCCBSEE
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc-CCccccc
Confidence            44555554   899999999999999999999        6 7665544

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.54  E-value=0.00015  Score=59.38  Aligned_cols=64  Identities=19%  Similarity=0.127  Sum_probs=36.6

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHH-HHHHH------cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA------LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~------l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  ...-...+|.+++  |++++++..- ..++.+ .+...      .++|+++++||+|+..
T Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  132 (182)
T 1ky3_A           59 TMQVWDTAGQERFQSLGVAFYRGADCCVL--VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  132 (182)
T ss_dssp             EEEEECCC----------CCSTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             EEEEEECCCChHhhhhhHHHhhcCCEEEE--EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence            47889999999998  3344567788777  9999874321 112222 22222      4668999999999953

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.53  E-value=2.7e-05  Score=80.93  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             eccccCCcc---CcEEEEEcCCCChHHHHHHHHh
Q psy15138        193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+++++++.   |+.++|+||||||||||||+++
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence            345566654   8999999999999999999986

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.53  E-value=4e-05  Score=63.43  Aligned_cols=76  Identities=14%  Similarity=0.114  Sum_probs=42.2

Q ss_pred             eEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHHHHHH
Q psy15138         16 ASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVLQDTL   88 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~le~~l   88 (320)
                      +.++|+|||++|..+  .-...+|.+++  |++++++..  ......-.+...   .++|+++++||+|+.+.....+..
T Consensus        54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~  131 (189)
T 4dsu_A           54 LDILDTAGQEEYSAMRDQYMRTGEGFLC--VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQA  131 (189)
T ss_dssp             EEEEECCCC---CTTHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHH
Confidence            567899999999822  12345677766  888886432  111212233332   356889999999997543333333


Q ss_pred             HHHHH
Q psy15138         89 KLLVR   93 (320)
Q Consensus        89 ~~~~~   93 (320)
                      .++..
T Consensus       132 ~~~~~  136 (189)
T 4dsu_A          132 QDLAR  136 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.53  E-value=4.5e-05  Score=64.79  Aligned_cols=69  Identities=13%  Similarity=0.184  Sum_probs=46.7

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCChhHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPPNVLQ   85 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~le   85 (320)
                      .+.++|+||+++|.  .-.....+|.+++  |++++.+..  ......+..++..  ++|+++|+||+|+.......
T Consensus        74 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~  148 (207)
T 2fv8_A           74 ELALWDTAGQEDYDRLRPLSYPDTDVILM--CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVR  148 (207)
T ss_dssp             EEEEEECTTCTTCTTTGGGGCTTCCEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHH
T ss_pred             EEEEEECCCcHHHHHHHHhhcCCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccch
Confidence            47788999999998  2333567788877  999886321  2223344444444  67999999999997654433

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.52  E-value=0.0001  Score=60.84  Aligned_cols=64  Identities=14%  Similarity=0.025  Sum_probs=35.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  ...-...+|.+++  |++++++.. ...++.+..+...   ++|+++|.||+|+..
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  127 (183)
T 2fu5_C           58 KLQIWDTAGQERFRTITTAYYRGAMGIML--VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND  127 (183)
T ss_dssp             EEEEEEC---------CCTTTTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred             EEEEEcCCCChhhhhhHHHHHhcCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence            47889999999998  3334567788877  999987432 2223344333332   568889999999964

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.51  E-value=5.9e-05  Score=61.28  Aligned_cols=64  Identities=14%  Similarity=0.053  Sum_probs=38.2

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .-.-...+|.+++  |++++++.. ...++.+..++.   .++|+++++||+|+.+
T Consensus        56 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  125 (170)
T 1z08_A           56 NLAIWDTAGQERFHALGPIYYRDSNGAIL--VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK  125 (170)
T ss_dssp             EEEEEECCCC-------CCSSTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred             EEEEEECCCcHhhhhhHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence            46778999999998  2333456777777  999887432 122233322222   3568889999999964

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.51  E-value=2.6e-05  Score=72.53  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      +.+++|+|++|||||||++.|. |.+.+..|.+.+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~-~~~~~~~~~v~V~  108 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFG-KMLTERGHKLSVL  108 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHH-HHhhhcCCeEEEE
Confidence            4569999999999999999999 8877776666543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.51  E-value=2.8e-05  Score=64.72  Aligned_cols=30  Identities=30%  Similarity=0.217  Sum_probs=25.6

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      .|..++|+|++||||||+++.|+ +.+++ .|
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~-~~l~~-~g   33 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALE-EYLVC-HG   33 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH-HHHHH-TT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH-HHHhh-CC
Confidence            47789999999999999999999 77654 45

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.50  E-value=4.6e-05  Score=65.08  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             ceEEEeCCCcchhhccC--CCCccchhhhccceecCCCCchh-HHHHHHHHHH---cCCCcEEEEeCCCCCChhHHHHHH
Q psy15138         15 AASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIVGM-TKEHLGLALA---LSVPVFVVVTKIDMCPPNVLQDTL   88 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~le~~l   88 (320)
                      .+.++|+||+++|..+.  -...+|.+++  |++++++.... ..+.+..+..   .++|+++|+||+|+.+......  
T Consensus        62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--  137 (218)
T 4djt_A           62 KFNVWDTAGQEKKAVLKDVYYIGASGAIL--FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK--  137 (218)
T ss_dssp             EEEEEEECSGGGTSCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--
T ss_pred             EEEEEecCCchhhchHHHHHhhcCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--
Confidence            37888999999998222  2345777777  99999754321 1122233332   2568999999999975422211  


Q ss_pred             HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCc
Q psy15138         89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGR  132 (320)
Q Consensus        89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~  132 (320)
                      +..........+.   + +-.+..+.+.++++...+.+.+.+..
T Consensus       138 ~~~~~~~~~~~~~---~-~~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          138 KLVMEVLKGKNYE---Y-FEISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             HHHHHHTTTCCCE---E-EEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHcCCc---E-EEEecCCCCCHHHHHHHHHHHHhccc
Confidence            1222222222221   1 11334555667777777666655443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.48  E-value=3.9e-05  Score=65.15  Aligned_cols=66  Identities=14%  Similarity=0.038  Sum_probs=45.9

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHH--HHHHHHHHc--CCCcEEEEeCCCCCChhH
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTK--EHLGLALAL--SVPVFVVVTKIDMCPPNV   83 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~--~~l~l~~~l--~i~~~v~lnk~Dl~~~~~   83 (320)
                      +.++|+||+++|.  .-.....+|.+++  |++++++..-...  +.+..++..  ++|.++|+||+|+.+...
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  151 (204)
T 4gzl_A           80 LGLWDTAGLEDYDRLRPLSYPQTDVFLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD  151 (204)
T ss_dssp             EEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence            4589999999998  3334567888888  9999874332221  334444444  678999999999976544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.48  E-value=6.1e-05  Score=60.58  Aligned_cols=65  Identities=17%  Similarity=0.045  Sum_probs=49.9

Q ss_pred             ceEEEeCCCcchh-------h--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERD-------D--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~-------~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+||++++       .  .......+|.+++  |++++.+............+..++|.++++||+|+.+.
T Consensus        50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLF--AVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH  123 (161)
T ss_dssp             EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEE--EEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred             eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEE--EEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence            5778999999983       2  1222456777777  99999987777766667777778899999999999754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.48  E-value=5.4e-05  Score=64.39  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++|+|||||||||+.++|+ +
T Consensus         4 ~i~l~G~~GsGKST~~~~La-~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFT-D   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHH-T
T ss_pred             EEEEECCCCCCHHHHHHHHH-H
Confidence            48999999999999999999 7

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.47  E-value=7e-05  Score=63.43  Aligned_cols=64  Identities=16%  Similarity=0.039  Sum_probs=42.2

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..  ......+|.+++  |++++++.. ...++.+..+...   ++|+++|+||+|+..
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  139 (213)
T 3cph_A           70 KLQLWDTAGQERFRTITTAYYRGAMGIIL--VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET  139 (213)
T ss_dssp             EEEEECCTTGGGGTCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred             EEEEEeCCCcHHHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            478899999999982  222445677777  999887432 1223344333332   568889999999953

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.47  E-value=4e-05  Score=70.44  Aligned_cols=37  Identities=16%  Similarity=-0.006  Sum_probs=33.0

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .+++++|+||||+||||++..|+ +.+.+..|.+.+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA-~~l~~~g~kVllid  140 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMA-NYYAELGYKVLIAA  140 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHH-HHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH-HHHHHCCCeEEEEe
Confidence            37889999999999999999999 99988888887753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.44  E-value=6.7e-05  Score=62.94  Aligned_cols=64  Identities=17%  Similarity=0.096  Sum_probs=43.2

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..  -.....+|.+++  |++++++.. ....+.+ .+.+   ..++|.+++.||+|+..
T Consensus        68 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           68 KFTTFDLGGHIQARRLWKDYFPEVNGIVF--LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             EEEEEECCCSGGGTTSGGGGCTTCCEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             EEEEEECCCCHHHHHHHHHHHhcCCEEEE--EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence            477889999999982  223456788877  999987542 2222222 2322   24668899999999975

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.43  E-value=4e-05  Score=72.92  Aligned_cols=25  Identities=40%  Similarity=0.505  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ++.++|+|+||||||||+++|+ |..
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Ls-g~~  181 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMT-RAH  181 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHC-SSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHH-cCC
Confidence            7779999999999999999999 873

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.42  E-value=6.8e-05  Score=60.62  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=40.3

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..  -.-...+|.+++  |+++++... ......+ .+.+.   .++|+++++||+|+.+
T Consensus        52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  122 (167)
T 1c1y_A           52 MLEILDTAGTEQFTAMRDLYMKNGQGFAL--VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED  122 (167)
T ss_dssp             EEEEEEECSSCSSTTHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred             EEEEEECCChHHHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence            478899999999982  122345667766  888886321 1111222 23332   3678999999999964

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.41  E-value=7e-05  Score=60.88  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.....+|+|||||||||++..|.
T Consensus        21 f~~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           21 FKEGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHH
Confidence            334468999999999999999886

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.41  E-value=5.7e-05  Score=63.04  Aligned_cols=65  Identities=15%  Similarity=0.055  Sum_probs=42.6

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||++|.  ...-...+|.+++  |++++++.. ...+..+..+...   ++|+++|+||+|+.+.
T Consensus        66 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~  136 (196)
T 3tkl_A           66 KLQIWDTAGQERFRTITSSYYRGAHGIIV--VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK  136 (196)
T ss_dssp             EEEEEEECCSGGGCTTHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             EEEEEECCCcHhhhhhHHHHHhhCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence            47788999999998  2222445677777  999987432 1223333333333   5688899999999654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.41  E-value=2.5e-05  Score=63.07  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHH-HHH
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVL-QDT   87 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~l-e~~   87 (320)
                      +.++|+|||++|.  .-.....+|.+++  |++++++..  ........+.+.   .++|.++++||+|+.+.... .+.
T Consensus        53 ~~l~D~~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  130 (167)
T 1kao_A           53 LEILDTAGTEQFASMRDLYIKNGQGFIL--VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE  130 (167)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEECCCchhhHHHHHHHhccCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHH
Confidence            7789999999998  1222345577766  898886432  122222233333   36789999999998643211 111


Q ss_pred             HHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138         88 LKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI  128 (320)
Q Consensus        88 l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~  128 (320)
                      ..++...+   .+   ++ +.....+.+..+++...+.+.+
T Consensus       131 ~~~~~~~~---~~---~~-~~~Sa~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          131 GRALAEEW---GC---PF-METSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             HHHHHHHH---TS---CE-EEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---CC---CE-EEecCCCCcCHHHHHHHHHHHH
Confidence            12222211   11   11 1134466677777777666544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.40  E-value=0.00011  Score=62.06  Aligned_cols=64  Identities=14%  Similarity=-0.029  Sum_probs=42.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++.+..- ..++.+..+..   .++|+++|+||+|+..
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vil--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  127 (206)
T 2bcg_Y           58 KLQIWDTAGQERFRTITSSYYRGSHGIII--VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD  127 (206)
T ss_dssp             EEEEECCTTTTTTTCCCGGGGTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred             EEEEEeCCChHHHHHHHHHhccCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            47889999999998  2233456677777  9999874321 22223333332   2457889999999975

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.40  E-value=5.9e-05  Score=64.88  Aligned_cols=109  Identities=13%  Similarity=0.017  Sum_probs=58.7

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCCChhHH-HHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMCPPNVL-QDT   87 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~~~l-e~~   87 (320)
                      .+.++|+|||++|.  ...-...+|.+++  |++++.+..- ..++.+..++..   ++|++||+||+|+...... .+.
T Consensus        63 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vil--V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~  140 (223)
T 3cpj_B           63 KAQIWDTAGQERYRAITSAYYRGAVGALI--VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEE  140 (223)
T ss_dssp             EEEEECCTTTTTTTCCCGGGTTTCCEEEE--EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHH
T ss_pred             EEEEEECCCccchhhhHHHHhccCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence            57889999999998  3333556777777  9998874432 222334333332   5678888999998642111 111


Q ss_pred             HHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCc
Q psy15138         88 LKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGR  132 (320)
Q Consensus        88 l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~  132 (320)
                      ..++...   ..+   ++ +-....+.+.++++...+...+.+..
T Consensus       141 ~~~~~~~---~~~---~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          141 SKTFAQE---NQL---LF-TETSALNSENVDKAFEELINTIYQKV  178 (223)
T ss_dssp             HHHHHHH---TTC---EE-EECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHH---cCC---EE-EEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            1222211   111   11 11233555667777777766655443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.40  E-value=7.1e-05  Score=69.83  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      | .++|+||||||||||+.+|. +
T Consensus        27 g-~~~i~G~nG~GKttll~ai~-~   48 (359)
T 2o5v_A           27 G-VTGIYGENGAGKTNLLEAAY-L   48 (359)
T ss_dssp             E-EEEEECCTTSSHHHHHHHHH-H
T ss_pred             C-eEEEECCCCCChhHHHHHHH-H
Confidence            5 89999999999999999998 6

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.39  E-value=2.5e-05  Score=72.06  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC----CCCCceeeec
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL----DNGRGHARQK  237 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l----~~~~G~i~~~  237 (320)
                      +.++|+||||+|||||+++|+ +.+    .+.+|.+...
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia-~~l~~~~~~~sg~~~~~   89 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIA-SELQTNIHVTSGPVLVK   89 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHH-HHHTCCEEEEETTTCCS
T ss_pred             CeEEEECCCCCcHHHHHHHHH-HHhCCCEEEEechHhcC
Confidence            348999999999999999999 887    5666766543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.38  E-value=2.8e-05  Score=63.73  Aligned_cols=64  Identities=13%  Similarity=0.026  Sum_probs=41.2

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++.+..- ..+..+..++.   .++|+++++||+|+.+
T Consensus        65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  134 (179)
T 1z0f_A           65 KLQIWDTAGQERFRAVTRSYYRGAAGALM--VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA  134 (179)
T ss_dssp             EEEEEECTTGGGTCHHHHHHHHTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEEECCCChHhhhhHHHHhccCCEEEE--EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            47888999999998  2222345677777  9999875321 11222322222   3557889999999964

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.38  E-value=4.1e-05  Score=64.17  Aligned_cols=64  Identities=9%  Similarity=-0.028  Sum_probs=42.8

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..  ......+|.+++  |++++++.. ...++.+..++..   ++|+++|+||+|+.+
T Consensus        73 ~~~i~Dt~G~~~~~~~~~~~~~~~d~iil--V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A           73 KFLIWDTAGQERFHSLAPMYYRGSAAAVI--VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD  142 (192)
T ss_dssp             EEEEEEECCSGGGGGGTHHHHTTCSEEEE--EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEcCCCchhhHhhhHHhhccCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            478889999999982  222345677777  999987543 2223344333333   568889999999964

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.37  E-value=7.8e-05  Score=63.21  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++|+|+|||||||+.+.|+ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~-~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFR-E   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHH-H
T ss_pred             EEEEECCCCcCHHHHHHHHH-H
Confidence            58999999999999999999 6

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.37  E-value=0.00016  Score=61.37  Aligned_cols=65  Identities=20%  Similarity=0.156  Sum_probs=43.3

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||++|..+  .....+|.+++  |++++++..-..  ...+..++..  ++|+++|.||+|+...
T Consensus        58 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           58 NLGLWDTAGQEDYSRLRPLSYRGADIFVL--AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             EEEEECCCCCCCCCC--CGGGTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred             EEEEEECCCcHHHHHHHHhhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence            5788999999999822  22456777777  999886332111  1233344433  6789999999998654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.37  E-value=0.00017  Score=59.27  Aligned_cols=64  Identities=19%  Similarity=0.129  Sum_probs=41.6

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      +.++|+|||++|.  .-.....+|.+++  |++++++..-..  ...+..++..  ++|++++.||+|+...
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           58 LGLWDTAGQEDYNRLRPLSYRGADVFIL--AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             CEEECCCC-CTTTTTGGGGGTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred             EEEEECCCChhhhhhHHhhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence            5699999999998  2233456788777  999987432111  1233333332  6789999999998654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.37  E-value=7.3e-05  Score=63.11  Aligned_cols=108  Identities=14%  Similarity=0.007  Sum_probs=58.5

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHH----HHcCCCcEEEEeCCCCCChhHHH-H
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLA----LALSVPVFVVVTKIDMCPPNVLQ-D   86 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~----~~l~i~~~v~lnk~Dl~~~~~le-~   86 (320)
                      .+.++|+||+++|.  ...-...+|.+++  |+++++...- ...+.+...    ...++|+++|+||+|+.+..... +
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~  150 (201)
T 3oes_A           73 HLHLVDTAGQDEYSILPYSFIIGVHGYVL--VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV  150 (201)
T ss_dssp             EEEEEEECCCCTTCCCCGGGTTTCCEEEE--EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEECCCccchHHHHHHHHhcCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH
Confidence            36789999999998  3333556787777  9998863321 111222211    12367889999999986432111 1


Q ss_pred             HHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG  131 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~  131 (320)
                      ...++...+   .+   ++ +-....+....+++...+...+.+.
T Consensus       151 ~~~~~~~~~---~~---~~-~~~Sa~~~~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          151 EGKKLAESW---GA---TF-MESSARENQLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHH---TC---EE-EECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHh---CC---eE-EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            112222211   11   11 1133456667777776666554433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.37  E-value=5.8e-05  Score=61.89  Aligned_cols=64  Identities=14%  Similarity=0.011  Sum_probs=41.6

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchh-HHHHHH-HHHHc-CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGM-TKEHLG-LALAL-SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~-l~~~l-~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++++..-. .++.+. +.+.. .+|.++|+||+|+.+
T Consensus        59 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  127 (181)
T 3tw8_B           59 KLQIWDTAGQERFRTITSTYYRGTHGVIV--VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE  127 (181)
T ss_dssp             EEEEEEETTGGGCSSCCGGGGTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred             EEEEEcCCCchhhhhhHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence            47788999999998  2233456677777  99998743221 122222 22222 357889999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.36  E-value=6.8e-05  Score=67.12  Aligned_cols=29  Identities=28%  Similarity=0.192  Sum_probs=25.3

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      ..|+.++|+||||||||||++.|+ +.+..
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~-~~~~~   56 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLA-AQIAG   56 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH-HHHHT
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHH-HHHhc
Confidence            359999999999999999999999 76653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.35  E-value=3.1e-05  Score=62.81  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=41.3

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..  ......+|.+++  |++++++.. ...++.+.-+...   .+|++++.||+|+.+
T Consensus        56 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~  125 (170)
T 1r2q_A           56 KFEIWDTAGQERYHSLAPMYYRGAQAAIV--VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN  125 (170)
T ss_dssp             EEEEEEECCSGGGGGGHHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEeCCCcHHhhhhhHHhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence            477889999999982  222455677777  999987532 2223344333332   446777779999854

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.35  E-value=8.2e-05  Score=63.36  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |..++|+||||||||||.+.|. ..+
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~-~~~   36 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVL-SEF   36 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHH-HHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-HhC
Confidence            6779999999999999999998 555

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.34  E-value=7.6e-05  Score=63.70  Aligned_cols=36  Identities=22%  Similarity=0.050  Sum_probs=28.0

Q ss_pred             CccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       199 ~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      ...|+.++|+||||||||||++.|+ +  .++.+.+.+.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~-~--~~~~~v~~i~   52 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTG-L--LSGKKVAYVD   52 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHH-H--HHCSEEEEEE
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH-H--HcCCcEEEEE
Confidence            3359999999999999999999999 7  4444444443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.34  E-value=2.3e-05  Score=64.66  Aligned_cols=64  Identities=13%  Similarity=0.011  Sum_probs=41.1

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .-.....+|.+++  |+++++...- .....+ .+...   .++|+++|+||+|+.+
T Consensus        67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  137 (187)
T 2a9k_A           67 QIDILDTAGQEDYAAIRDNYFRSGEGFLC--VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  137 (187)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred             EEEEEECCCCcccHHHHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            47789999999988  2222345677777  9998864321 112222 22232   2678999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.34  E-value=5.9e-05  Score=68.47  Aligned_cols=38  Identities=16%  Similarity=-0.065  Sum_probs=33.8

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF  239 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~  239 (320)
                      .|++++++|+||+||||+++.|+ +.+.+..|.+.+...
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la-~~~~~~~~~v~l~~~  134 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLA-LYYKGKGRRPLLVAA  134 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHH-HHHHHTTCCEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH-HHHHHcCCeEEEecC
Confidence            58899999999999999999999 999888888877543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.34  E-value=8.4e-05  Score=60.10  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=41.6

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHHHHHHH--cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA--LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~--l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..+  .-...+|.+++  |++++.+.. ......+..+..  .++|.++|+||+|+.+
T Consensus        55 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  123 (168)
T 1z2a_A           55 RLMLWDTAGQEEFDAITKAYYRGAQACVL--VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD  123 (168)
T ss_dssp             EEEEECCTTGGGTTCCCHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred             EEEEEcCCCcHhHHHHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence            5788899999998822  22345677777  999887432 122223322222  3679999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.33  E-value=8e-05  Score=61.59  Aligned_cols=64  Identities=14%  Similarity=0.037  Sum_probs=42.9

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++.+..- ..+..+..++.   .++|+++++||+|+.+
T Consensus        60 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (186)
T 2bme_A           60 KLQIWDTAGQERFRSVTRSYYRGAAGALL--VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA  129 (186)
T ss_dssp             EEEEEEECCSGGGHHHHHTTSTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEeCCCcHHHHHHHHHHHhcCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            57789999999998  3444567788777  9999874321 11223322222   3567889999999853

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.33  E-value=0.00012  Score=61.74  Aligned_cols=64  Identities=19%  Similarity=0.177  Sum_probs=38.7

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..+  .-...+|.+++  |++++++.. ....+.+ .+.+   ..++|.+++.||+|+..
T Consensus        70 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           70 TFTTFDLGGHIQARRVWKNYLPAINGIVF--LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE  140 (198)
T ss_dssp             EEEEEEECC----CCGGGGGGGGCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             EEEEEECCCcHhhHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence            4678899999999832  22446777777  999987532 2222222 2222   24678999999999975

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.32  E-value=0.00024  Score=59.70  Aligned_cols=64  Identities=16%  Similarity=0.019  Sum_probs=43.5

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  ...-...+|.+++  |++++.+.. ...++.+..+..   .++|+++|+||+|+..
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  127 (203)
T 1zbd_A           58 KLQIWDTAGLERYRTITTAYYRGAMGFIL--MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED  127 (203)
T ss_dssp             EEEEEEECCSGGGHHHHHTTGGGCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred             EEEEEECCCchhhcchHHHhhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence            47888999999998  3344556777777  999987432 122233333333   2568889999999964

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.32  E-value=0.00013  Score=60.18  Aligned_cols=25  Identities=40%  Similarity=0.688  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |.+++|+|++|+|||||++.|. +..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~-~~~   28 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALA-GRE   28 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH-TSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCC
Confidence            6789999999999999999999 754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.31  E-value=0.00013  Score=60.60  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=42.8

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCChh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~~~   82 (320)
                      .+.++|+||+++|.  .......+|.+++  |++++++.. ....+.+ .+.+   ..++|.+++.||+|+....
T Consensus        61 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  133 (181)
T 1fzq_A           61 KLNVWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (181)
T ss_dssp             EEEEEECSSCGGGHHHHHHHHTTCSEEEE--EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             EEEEEECCCCHHHHHHHHHHhCCCCEEEE--EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence            47788999999997  2222345677777  999887432 1222233 2322   2356888999999997543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.31  E-value=0.00016  Score=60.19  Aligned_cols=107  Identities=13%  Similarity=-0.014  Sum_probs=58.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH----cCCCcEEEEeCCCCCChhHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA----LSVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~----l~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      .+.++|+|||++|.  ...-...+|.+++  |++++.+..- ..+..+.-...    ..+|+++|+||+|+.......+.
T Consensus        65 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  142 (195)
T 1x3s_A           65 KLAIWDTAGQERFRTLTPSYYRGAQGVIL--VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNE  142 (195)
T ss_dssp             EEEEEEECSSGGGCCSHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHH
T ss_pred             EEEEEeCCCchhhhhhhHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHH
Confidence            37788999999998  2222345677777  9999874321 12223322222    24577889999999543211111


Q ss_pred             HHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHcC
Q psy15138         88 LKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDNG  131 (320)
Q Consensus        88 l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~~  131 (320)
                      ..++..   ...+     .+. ....+.+..+++...+.+.+.+.
T Consensus       143 ~~~~~~---~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          143 GLKFAR---KHSM-----LFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHH---HTTC-----EEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHHHHH---HcCC-----EEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            122221   1111     111 23355566777777776665543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.31  E-value=0.00013  Score=76.87  Aligned_cols=25  Identities=40%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      |++++|+||||||||||||+|  |++.
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i--Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA--GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH--HHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH--HHHH
Confidence            689999999999999999998  4443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.30  E-value=5.1e-05  Score=61.25  Aligned_cols=64  Identities=13%  Similarity=0.040  Sum_probs=38.2

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .-.-...+|.+++  |+++++... ....+.+ .+...   .++|.++++||+|+.+
T Consensus        53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A           53 QIDILDTAGQEDYAAIRDNYFRSGEGFLC--VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  123 (168)
T ss_dssp             EEEEEECCC---CHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred             EEEEEECCCcchhHHHHHHHhhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence            47789999999988  2222345677777  999886432 1122222 23332   2578999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.30  E-value=0.00017  Score=58.90  Aligned_cols=23  Identities=48%  Similarity=0.800  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|++|+|||||++.+. |..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~-~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALT-GEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-CCS
T ss_pred             EEEEECCCCCCHHHHHHHHh-CCC
Confidence            58999999999999999999 754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.29  E-value=0.00027  Score=62.25  Aligned_cols=65  Identities=14%  Similarity=0.021  Sum_probs=45.4

Q ss_pred             CceEEEeCCCcchhhc-------------cCCCCccchhhhccceecCCCCchhHHHHHHHHHHc-----CCCcEEEEe-
Q psy15138         14 NAASVFETRIHERDDD-------------LPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL-----SVPVFVVVT-   74 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~-------------~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-----~i~~~v~ln-   74 (320)
                      ..+.|+|+|||.++..             ......+|.+++  |++++. +.++....+..+...     ..|+++++| 
T Consensus        71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~--V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~n  147 (260)
T 2xtp_A           71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLL--VTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTH  147 (260)
T ss_dssp             EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEE--EEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred             CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE--EEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEc
Confidence            3588999999988641             112456788888  999985 666666555555444     568888887 


Q ss_pred             CCCCCCh
Q psy15138         75 KIDMCPP   81 (320)
Q Consensus        75 k~Dl~~~   81 (320)
                      |+|+...
T Consensus       148 K~Dl~~~  154 (260)
T 2xtp_A          148 KEDLNGG  154 (260)
T ss_dssp             GGGGTTC
T ss_pred             ccccCCc
Confidence            9999753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.28  E-value=5.4e-05  Score=68.56  Aligned_cols=27  Identities=19%  Similarity=0.106  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      +.+++|+||||||||||++.|. +.+.+
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~-~~l~~   57 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIY-NHLME   57 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HHhhh
Confidence            5679999999999999999999 88765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.28  E-value=0.00012  Score=64.37  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=26.7

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ++|+||||+|||||+++|+ +.+.  .|.+.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~-~~~~--~~~i~~~~   82 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVA-GEAR--VPFITASG   82 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHH-HHTT--CCEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHH-HHhC--CCEEEeeH
Confidence            8999999999999999999 8775  67777653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.27  E-value=0.00013  Score=60.60  Aligned_cols=23  Identities=39%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|++|+|||||++.+. +..
T Consensus         4 kv~ivG~~gvGKStLl~~l~-~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLM-KTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHT-CC-
T ss_pred             EEEEECCCCCCHHHHHHHHh-cCC
Confidence            58999999999999999999 753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.26  E-value=5.6e-05  Score=61.97  Aligned_cols=64  Identities=14%  Similarity=0.100  Sum_probs=40.4

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..+  .-...+|.+++  |+++++... ....+.+ .+.+   ..++|+++|+||+|+.+
T Consensus        58 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  128 (181)
T 2fn4_A           58 RLDILDTAGQEEFGAMREQYMRAGHGFLL--VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES  128 (181)
T ss_dssp             EEEEEECCCTTTTSCCHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred             EEEEEECCCchhhHHHHHHHHhhCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            4778999999999722  11345677766  888886321 1111222 2323   23668999999999865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.26  E-value=7.2e-05  Score=67.02  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             CCceEEEeCCCcchhhccCC--------------CCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         13 ENAASVFETRIHERDDDLPE--------------ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~~~~~--------------~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      ...+.++|+||+.+|.-+..              ...+|.+++  |+++...  .........+..+++|+++|+||+|+
T Consensus        49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~--VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl  124 (274)
T 3i8s_A           49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLIN--VVDASNL--ERNLYLTLQLLELGIPCIVALNMLDI  124 (274)
T ss_dssp             SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEE--EEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred             CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEE--EecCCCh--HHHHHHHHHHHhcCCCEEEEEECccc
Confidence            34688999999999872211              146788877  9998862  22222334445568999999999998


Q ss_pred             CChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138         79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS  126 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~  126 (320)
                      .....++...+++.+.+   +|.-    +-.+..+.++++++...+.+
T Consensus       125 ~~~~~~~~~~~~l~~~l---g~~~----i~~SA~~g~gi~el~~~i~~  165 (274)
T 3i8s_A          125 AEKQNIRIEIDALSARL---GCPV----IPLVSTRGRGIEALKLAIDR  165 (274)
T ss_dssp             HHHTTEEECHHHHHHHH---TSCE----EECCCGGGHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHHhc---CCCE----EEEEcCCCCCHHHHHHHHHH
Confidence            64322211223333322   1211    11334566777777766544

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.26  E-value=0.00017  Score=68.26  Aligned_cols=43  Identities=16%  Similarity=0.085  Sum_probs=31.8

Q ss_pred             cccCCccCcEEEEEcCCCChHHHHHH--HHhcCcCCCCCc-----eeeecc
Q psy15138        195 VESQDFLEIRVAVVGNVDAGKSTLLG--VLTHGELDNGRG-----HARQKL  238 (320)
Q Consensus       195 l~~~~~~g~~v~ivGpnGsGKSTLl~--~l~~G~l~~~~G-----~i~~~~  238 (320)
                      +..+...|+.++|+||||||||||++  ++. +..++..|     .+++..
T Consensus       171 LgGGI~~Gei~~I~G~sGsGKTTLl~~la~~-~~~p~~~Gg~~~~viyid~  220 (400)
T 3lda_A          171 LGGGVETGSITELFGEFRTGKSQLCHTLAVT-CQIPLDIGGGEGKCLYIDT  220 (400)
T ss_dssp             TTTSEETTSEEEEEESTTSSHHHHHHHHHHH-TTSCGGGTCCSSEEEEEES
T ss_pred             hcCCcCCCcEEEEEcCCCCChHHHHHHHHHH-hccCcccCCCCCcEEEEeC
Confidence            44455569999999999999999999  445 77766433     555553

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.26  E-value=5.5e-05  Score=64.80  Aligned_cols=35  Identities=29%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc--eeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG--HARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G--~i~~~  237 (320)
                      |..++|+|++||||||+.+.|. +.+.|..|  .+.++
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~-~~l~~~~g~~~~~~~   61 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELE-HQLVRDRRVHAYRLD   61 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH-HHHHHHHCCCEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-HHhccccCCcEEEEC
Confidence            6779999999999999999999 87776666  44443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.26  E-value=4.3e-05  Score=63.86  Aligned_cols=64  Identities=17%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|.  .......+|.+++  |++++.+.. ...++.+..+...   ++|+++|+||+|+..
T Consensus        75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~--v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~  144 (193)
T 2oil_A           75 KAQIWDTAGLERYRAITSAYYRGAVGALL--VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ  144 (193)
T ss_dssp             EEEEEEESCCCTTCTTHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEeCCCchhhhhhhHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence            36788999999997  2222345677777  999987432 1223344333332   457889999999964

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.25  E-value=0.00014  Score=61.26  Aligned_cols=65  Identities=15%  Similarity=0.055  Sum_probs=40.5

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+||+++|.  .......+|.+++  |++++++.. ...++.+..+...   ++|.++|+||+|+.+.
T Consensus        83 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B           83 KLQIWDTAGQERFRTITSSYYRGAHGIIV--VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             EEEEECCTTCTTCCCCSCC--CCCSEEEE--CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred             EEEEEECCCcHhHHHHHHHHhhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence            47888999999998  3334567788877  999987443 1223333333333   5678888899999643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.24  E-value=0.00039  Score=61.57  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=44.5

Q ss_pred             ceEEEeCCCcchhh------------ccCCCCccchhhhccceecCCC-CchhHHHHHH-HHHHcC----CCcEEEEeCC
Q psy15138         15 AASVFETRIHERDD------------DLPEASPADHSMLQSKVGANAG-IVGMTKEHLG-LALALS----VPVFVVVTKI   76 (320)
Q Consensus        15 ~~~~~d~pgh~~~~------------~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~-l~~~l~----i~~~v~lnk~   76 (320)
                      .+.++|+|||++|.            .+. ...+|.+++  |++.+.. .....++-+. +....+    .|.++|+||+
T Consensus        85 ~l~liDTpG~~~~~~~~~~~~~~i~~~l~-~~~~~~il~--V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~  161 (262)
T 3def_A           85 TINIIDTPGLVEAGYVNHQALELIKGFLV-NRTIDVLLY--VDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA  161 (262)
T ss_dssp             EEEEEECCCSEETTEECHHHHHHHHHHTT-TCEECEEEE--EEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred             eEEEEECCCCCCcccchHHHHHHHHHHHh-cCCCCEEEE--EEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence            57899999999885            121 346788777  8888763 3333334443 333333    2778889999


Q ss_pred             CCCCh--hHHHHHHH
Q psy15138         77 DMCPP--NVLQDTLK   89 (320)
Q Consensus        77 Dl~~~--~~le~~l~   89 (320)
                      |+.++  ..++++++
T Consensus       162 Dl~~~~~~~~e~~~~  176 (262)
T 3def_A          162 QFSPPDELSYETFSS  176 (262)
T ss_dssp             TCCCSTTCCHHHHHH
T ss_pred             ccCCCCCccHHHHHH
Confidence            99633  33444443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.24  E-value=0.00014  Score=65.00  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      ++|+||||+|||||+++|+ +.+.  .|.+.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~-~~~~--~~~i~~~~  106 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVA-GEAR--VPFITASG  106 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHH-HHTT--CCEEEEEH
T ss_pred             EEEECCCcChHHHHHHHHH-HHcC--CCEEEecH
Confidence            8999999999999999999 8875  67777653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.23  E-value=9.6e-05  Score=61.80  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      |..++|+|++||||||+.+.|+ ..+.+..+.+
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~-~~l~~~~~~~   44 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLA-DLLQKEGYRV   44 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHH-HHHHhcCCeE
Confidence            6779999999999999999999 7776555544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.23  E-value=0.0001  Score=72.15  Aligned_cols=32  Identities=16%  Similarity=0.249  Sum_probs=28.5

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCce
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGH  233 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~  233 (320)
                      ..|+.++|+||||||||||++.++ |...+. |.
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~-g~~~~~-G~  310 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFV-ENACAN-KE  310 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHH-HHHHTT-TC
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHH-HHHHhC-CC
Confidence            349999999999999999999999 998875 54

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.22  E-value=0.00016  Score=60.42  Aligned_cols=64  Identities=13%  Similarity=0.038  Sum_probs=42.3

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..  ..-...+|.+++  |++++++.. ...++.+..++..   ++|+++|+||+|+.+
T Consensus        71 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~  140 (191)
T 2a5j_A           71 KLQIWDTAGQESFRSITRSYYRGAAGALL--VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES  140 (191)
T ss_dssp             EEEEECCTTGGGTSCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEEECCCchhhhhhHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence            478889999999982  222445677777  999987432 1223344333332   568889999999964

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.21  E-value=0.00019  Score=61.97  Aligned_cols=66  Identities=12%  Similarity=0.064  Sum_probs=41.0

Q ss_pred             CceEEEeCCCc------ch----hhcc-CCCCccchhhhccceecCCCCchh---HHHHHHHHHHc--CCCcEEEEeCCC
Q psy15138         14 NAASVFETRIH------ER----DDDL-PEASPADHSMLQSKVGANAGIVGM---TKEHLGLALAL--SVPVFVVVTKID   77 (320)
Q Consensus        14 ~~~~~~d~pgh------~~----~~~~-~~~~~~d~~~l~~vv~a~~g~~~~---t~~~l~l~~~l--~i~~~v~lnk~D   77 (320)
                      ..+.++|+||+      ++    |..+ .-...+|.+++  |++++++..-.   ..+.+..++..  ++|+++|+||+|
T Consensus        76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~D  153 (228)
T 2qu8_A           76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILF--IIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKID  153 (228)
T ss_dssp             EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEE--EEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGG
T ss_pred             CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEE--EEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcc
Confidence            35788999999      65    3311 11344566666  99998764422   12233333333  679999999999


Q ss_pred             CCCh
Q psy15138         78 MCPP   81 (320)
Q Consensus        78 l~~~   81 (320)
                      +.+.
T Consensus       154 l~~~  157 (228)
T 2qu8_A          154 KCNM  157 (228)
T ss_dssp             GCC-
T ss_pred             cCCc
Confidence            9754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.20  E-value=0.00028  Score=59.58  Aligned_cols=64  Identities=11%  Similarity=0.049  Sum_probs=41.6

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|.  ...-...+|.+++  |++++++.. ...++.+..++.   .++|+++|.||+|+..
T Consensus        79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~  148 (201)
T 2hup_A           79 KLQIWDTAGQERFRTITQSYYRSANGAIL--AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE  148 (201)
T ss_dssp             EEEEECCTTCGGGHHHHHHHHTTCSEEEE--EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEEECCCcHhHHHHHHHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence            57889999999998  2222345677777  999886322 122233333332   3467888899999964

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.20  E-value=0.00012  Score=61.30  Aligned_cols=64  Identities=13%  Similarity=0.042  Sum_probs=42.9

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|.  .......+|.+++  |++++++..- ..++.+..++..   ++|+++|+||+|+.+
T Consensus        76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iil--V~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~  145 (192)
T 2il1_A           76 RLQIWDTAGQERFNSITSAYYRSAKGIIL--VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET  145 (192)
T ss_dssp             EEEEEEECCSGGGHHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEeCCCcHHHHHHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            47888999999998  2222456677777  9999874422 222333444443   567889999999864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.19  E-value=0.00032  Score=56.64  Aligned_cols=64  Identities=16%  Similarity=0.091  Sum_probs=32.7

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|.  .-.-...+|.+++  |++.++... ....+.+ .+.+.   -++|.++|.||+|+.+
T Consensus        50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  120 (166)
T 3q72_A           50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVI--VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR  120 (166)
T ss_dssp             EEEEEECC---------------CCEEEE--EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred             EEEEEECCCCccchhhhhhhhhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence            36788999999998  2223456777777  888886321 1112222 33332   3578899999999964

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.19  E-value=0.00026  Score=65.80  Aligned_cols=41  Identities=29%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             ccccCCccCcEEEEEcCCCChHHHHHHHHhcC--cCCCCCceee
Q psy15138        194 RVESQDFLEIRVAVVGNVDAGKSTLLGVLTHG--ELDNGRGHAR  235 (320)
Q Consensus       194 ~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G--~l~~~~G~i~  235 (320)
                      .++.+++.--+++|+|++|||||||++.|. |  .++.+.|.+.
T Consensus        26 ~l~~i~~~lp~I~vvG~~~sGKSSLln~l~-g~~~lp~~~~~vT   68 (360)
T 3t34_A           26 ALPTLWDSLPAIAVVGGQSSGKSSVLESIV-GKDFLPRGSGIVT   68 (360)
T ss_dssp             CC----CCCCEEEEECBTTSSHHHHHHHHH-TSCCSCCCSSSCC
T ss_pred             ccccccccCCEEEEECCCCCcHHHHHHHHh-CCCcCCCCCCccc
Confidence            344444443479999999999999999999 8  5677777653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.18  E-value=0.00012  Score=67.29  Aligned_cols=33  Identities=18%  Similarity=0.146  Sum_probs=26.3

Q ss_pred             EEEEcCCCChHHHHHHHHhcC-cCCCCCceeeecc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHG-ELDNGRGHARQKL  238 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G-~l~~~~G~i~~~~  238 (320)
                      +.|.||||+|||||++.|+ + ++.|+.|.+.+++
T Consensus        39 ~ll~Gp~G~GKTtl~~~la-~~l~~~~~g~i~~~~   72 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALL-ESIFGPGVYRLKIDV   72 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHH-HHHSCTTCCC-----
T ss_pred             EEEECCCCCCHHHHHHHHH-HHHcCCCCCeEEecc
Confidence            7999999999999999999 8 7888889887653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.16  E-value=0.00015  Score=67.98  Aligned_cols=32  Identities=28%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                      .|+.++|+||||||||||+++|+ |.+   .|.+..
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~-~~~---~g~~~~  199 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALL-ELC---GGKALN  199 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHH-HHH---CCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH-hhc---CCcEEE
Confidence            38999999999999999999999 754   566554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.16  E-value=0.00011  Score=67.91  Aligned_cols=35  Identities=29%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                      .+.+++|+|++|+|||||++.|+ +.+.+..|.+.+
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~-~~~~~~~~~v~v   89 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFG-MLLIREGLKVAV   89 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH-HHHHhcCCeEEE
Confidence            47889999999999999999999 887766665544

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.15  E-value=0.00017  Score=67.36  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++|+||||||||||+.+|+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            67899999999999999987

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.00018  Score=60.96  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ..++|+|++||||||+.+.|+ +.+
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~-~~l   42 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIA-EAC   42 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHH-HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HHh
Confidence            358999999999999999998 554

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.13  E-value=0.00028  Score=61.45  Aligned_cols=28  Identities=32%  Similarity=0.414  Sum_probs=23.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      +++|+|++|+|||||++.|. |...+.++
T Consensus        31 ~i~lvG~~g~GKStlin~l~-g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSIL-GRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-TSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHc-CCCcCccC
Confidence            58999999999999999999 87665554

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.13  E-value=0.0008  Score=65.06  Aligned_cols=104  Identities=12%  Similarity=0.058  Sum_probs=58.7

Q ss_pred             ceEEEeCCCcchhh-c---------cCCCCccchhhhccceecCCCCchh-HHHHHHHHHHc-CCCcEEEEeCCCCCChh
Q psy15138         15 AASVFETRIHERDD-D---------LPEASPADHSMLQSKVGANAGIVGM-TKEHLGLALAL-SVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~---------~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~l~~~l-~i~~~v~lnk~Dl~~~~   82 (320)
                      .+.++|+||+++|. .         ......+|.+++  |++++.+.... ..+...+.+.+ ++|.++|+||+|+.+..
T Consensus       282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~--VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~  359 (476)
T 3gee_A          282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILY--LLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANA  359 (476)
T ss_dssp             EEEEEC--------------------CCCSSCSEEEE--EEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTT
T ss_pred             EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEE--EEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCcc
Confidence            47889999998875 1         234677888888  99999887652 22333344433 46889999999998665


Q ss_pred             HHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         83 VLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        83 ~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      ..+.  +++.+.    .+  .+ -+..+..+.+.++++...+.+.+.
T Consensus       360 ~~~~--~~l~~~----~~--~~-~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          360 DALI--RAIADG----TG--TE-VIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHH--HHHHHH----HT--SC-EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             chhH--HHHHhc----CC--Cc-eEEEEECCCCCHHHHHHHHHHHHh
Confidence            4432  233332    00  11 122345666778888888777665

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.13  E-value=0.00017  Score=60.31  Aligned_cols=64  Identities=13%  Similarity=0.037  Sum_probs=41.1

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHH-HHHH----cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LALA----LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~----l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .-.....+|.+++  |++++.+.. ...+..+. +...    -++|+++|+||+|+..
T Consensus        57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           57 TLQITDTTGSHQFPAMQRLSISKGHAFIL--VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             EEEEEECCGGGSCHHHHHHHHHHCSEEEE--EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             EEEEEeCCChHHhHHHHHHhhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            47789999999988  2222345677777  888886322 11112222 3332    2568999999999975

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.12  E-value=0.00024  Score=58.79  Aligned_cols=23  Identities=48%  Similarity=0.833  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++|+|++|+|||||++.+. +.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~-~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALT-GE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH-TT
T ss_pred             CEEEEECCCCCCHHHHHHHHh-CC
Confidence            358999999999999999999 64

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.19  E-value=7.1e-05  Score=63.23  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=43.5

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch--hHHHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      +.++|+||+++|.  .-.....+|.+++  |++++++..-  .....+..++..  ++|+++|.||+|+.+.
T Consensus        80 l~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           80 LGLWDTAGQEDYDRLRPLSYPQTDVFLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  149 (204)
Confidence            5588999999998  2233557788877  9998765422  211333333333  6789999999999754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.11  E-value=0.00021  Score=57.80  Aligned_cols=64  Identities=13%  Similarity=0.006  Sum_probs=41.5

Q ss_pred             ceEEEeCCCcchhhccC--CCCccchhhhccceecCCCCch-hHHHHHHHHHHcC---CCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIVG-MTKEHLGLALALS---VPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~---i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..+.  -...+|.+++  |++++++..- ..++.+..++...   +|++++.||+|+.+
T Consensus        56 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~  125 (170)
T 1z0j_A           56 KFLIWDTAGLERFRALAPMYYRGSAAAII--VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD  125 (170)
T ss_dssp             EEEEEEECCSGGGGGGTHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred             EEEEEcCCCchhhhcccHhhCcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence            47789999999998222  2345677777  9999875432 2233444444443   35677779999964

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.10  E-value=0.00025  Score=57.96  Aligned_cols=22  Identities=27%  Similarity=0.156  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .++|+|++||||||+.+.|+ ..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~-~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLS-KE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHHH-HH
Confidence            48999999999999999998 44

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.10  E-value=0.00023  Score=59.21  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |..++|+|++||||||+.+.|+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5679999999999999999998

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.08  E-value=0.00027  Score=66.69  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc-----------CCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE-----------LDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~-----------l~~~~G~i~~~  237 (320)
                      +.+++|+|++|+|||||++.|+ |.           ..|..|.+.+.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Lt-g~~~~~~~~p~tTi~p~~g~v~v~   67 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLT-NSQASAENFPFCTIDPNESRVPVP   67 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHH-C-------------CCSEEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-CCCccccCCCccccCceeEEEEEC
Confidence            6679999999999999999999 87           55666766543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.08  E-value=7.3e-05  Score=60.64  Aligned_cols=64  Identities=16%  Similarity=0.097  Sum_probs=41.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHH-HHHH----cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LALA----LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~----l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .......+|.+++  |++++.+.. ...++.+. +.+.    -++|+++++||+|+.+
T Consensus        52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~  123 (172)
T 2erx_A           52 TLQITDTTGSHQFPAMQRLSISKGHAFIL--VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  123 (172)
T ss_dssp             EEEEEECCSCSSCHHHHHHHHHHCSEEEE--EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             EEEEEECCCchhhHHHHHHhcccCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence            36889999999988  2222345677777  999886332 12222332 3332    2579999999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.07  E-value=0.00018  Score=65.88  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .++|+||||||||||+.+|. .++
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~-~ll   48 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK-WVF   48 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH-HTS
T ss_pred             cEEEECCCCCcHHHHHHHHH-HHh
Confidence            79999999999999999998 665

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.07  E-value=0.0002  Score=57.85  Aligned_cols=64  Identities=14%  Similarity=0.064  Sum_probs=41.5

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCch-hHHHHH-HHHHHc--CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALAL--SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~l--~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..  ......+|.+++  |++++++..- ..++.+ .+....  ++|+++++||+|+..
T Consensus        53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  122 (170)
T 1ek0_A           53 KFEIWDTAGQERFASLAPXYYRNAQAALV--VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ  122 (170)
T ss_dssp             EEEEEEECCSGGGGGGHHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEECCCChhhhhhhhhhhccCcEEEE--EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence            478899999999982  222345677777  9999874321 222223 233332  567888899999864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.07  E-value=0.00027  Score=60.43  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.....+|+|||||||||++..|.
T Consensus        21 f~~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           21 FKEGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             eCCCeEEEEcCCCCCHHHHHHHHH
Confidence            334568999999999999999875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.0004  Score=58.87  Aligned_cols=64  Identities=19%  Similarity=0.088  Sum_probs=42.7

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|.  .......+|.+++  |++++.+..- ..++.+..++..   ++|+++|.||+|+.+
T Consensus        76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~  145 (201)
T 2ew1_A           76 KLQIWDTAGQERFRSITQSYYRSANALIL--TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE  145 (201)
T ss_dssp             EEEEEEECCSGGGHHHHGGGSTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEEECCCcHHHHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            47888999999998  3334567788877  9998864321 123334333332   457788889999863

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.05  E-value=0.0001  Score=62.00  Aligned_cols=63  Identities=19%  Similarity=0.167  Sum_probs=41.9

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~   79 (320)
                      .+.++|+||+++|.  .......+|.+++  |++++.+..- ..++.+..++..   ++|+++|+||+|+.
T Consensus        78 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           78 VLQLWDTAGQERFRSIAKSYFRKADGVLL--LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEEECTTCTTCHHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred             EEEEEECCCCcchhhhHHHHHhhCCEEEE--EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            37789999999998  2222445777777  9999875432 222334333332   57899999999985

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.04  E-value=0.00011  Score=61.82  Aligned_cols=64  Identities=13%  Similarity=0.050  Sum_probs=41.2

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCch-hHHHHH-HHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|..+  .....+|.+++  |++++....- .....+ .+....   ++|+++|+||+|+.+
T Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  133 (206)
T 2bov_A           63 QIDILDTAGQEDYAAIRDNYFRSGEGFLC--VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  133 (206)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred             EEEEEcCCChhhhHHHHHHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence            4778999999999821  22345677766  8888863321 112222 333333   678999999999964

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.04  E-value=8.9e-05  Score=63.21  Aligned_cols=64  Identities=13%  Similarity=0.035  Sum_probs=40.7

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchh-HHHHHHHHHH----cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGM-TKEHLGLALA----LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~l~~~----l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  ...-...+|.+++  |++++.+..-. .++.+.....    .++|+++|+||+|+.+
T Consensus        85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iil--V~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~  155 (217)
T 2f7s_A           85 HLQLWDTAGQERFRSLTTAFFRDAMGFLL--MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD  155 (217)
T ss_dssp             EEEEEEEESHHHHHHHHHHHHTTCCEEEE--EEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             EEEEEECCCcHhHHhHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence            47889999999998  2222345677777  99998743211 1122221111    3457888999999964

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.04  E-value=0.00032  Score=61.00  Aligned_cols=72  Identities=14%  Similarity=-0.036  Sum_probs=40.0

Q ss_pred             CceEEEeCCCcc-----------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHH-H----HcCCCcEEEEeC
Q psy15138         14 NAASVFETRIHE-----------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLA-L----ALSVPVFVVVTK   75 (320)
Q Consensus        14 ~~~~~~d~pgh~-----------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~-~----~l~i~~~v~lnk   75 (320)
                      ..+.|+|+||+-           +|.  ......++|.+++  |++++. ......+.+... +    ....|.++|+||
T Consensus        78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A           78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLL--VVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEE--EEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEE--EeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence            358899999953           444  2223457788877  999874 333334444222 2    223488899999


Q ss_pred             CCCCChhHHHHHH
Q psy15138         76 IDMCPPNVLQDTL   88 (320)
Q Consensus        76 ~Dl~~~~~le~~l   88 (320)
                      +|+.....+++++
T Consensus       155 ~D~~~~~~~~~~i  167 (239)
T 3lxx_A          155 KDDLGDTNLHDYL  167 (239)
T ss_dssp             GGGC---------
T ss_pred             CccCCcccHHHHH
Confidence            9997665555444

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.03  E-value=0.00029  Score=61.38  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      |..++|.||+||||||+++.|. ..+.+ .+.+
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~-~~l~~-~~~~   56 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVY-HRLVK-DYDV   56 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH-HHHTT-TSCE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH-HHHhc-CCCc
Confidence            7889999999999999999999 77766 4444

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.02  E-value=0.00029  Score=65.06  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.....+|+||||||||||+..|.
T Consensus        21 f~~~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           21 FKEGINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHH
Confidence            444567999999999999999874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.02  E-value=0.00039  Score=64.94  Aligned_cols=23  Identities=35%  Similarity=0.677  Sum_probs=20.2

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      ++|+|++|||||||++.|+ |...
T Consensus       182 V~lvG~~naGKSTLln~L~-~~~~  204 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLT-GLTQ  204 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHH-CC--
T ss_pred             EEEECCCCCCHHHHHHHHH-CCCc
Confidence            8999999999999999999 8764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.01  E-value=0.0011  Score=55.22  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=37.4

Q ss_pred             ceEEEeCCCcchhhcc-CCCCccchhhhccceecCCCCc-hhHHHHHHHHHH------cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDL-PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA------LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~-~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~------l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..+ .-...+|.+++  |+++++... ...++.+..+..      -++|+++|.||+|+..
T Consensus        70 ~l~i~Dt~G~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           70 HLRVMDTADLDTPRNCERYLNWAHAFLV--VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             EEEEEECCC---CCCTHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             EEEEEECCCCCcchhHHHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence            3667899999998721 12234677777  888886321 112223322222      3679999999999853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.01  E-value=0.00035  Score=57.57  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +..+.|+|++||||||+.+.|+ ..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La-~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQ-SVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH-HHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHH-Hhc
Confidence            3568999999999999999999 444

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=96.97  E-value=0.00033  Score=70.92  Aligned_cols=66  Identities=11%  Similarity=0.088  Sum_probs=47.0

Q ss_pred             CceEEEeCCCcchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHH-HHHHcCCCcEEEEeCCCCCCh
Q psy15138         14 NAASVFETRIHERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLG-LALALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~-l~~~l~i~~~v~lnk~Dl~~~   81 (320)
                      ..+.++|+||+.+..     ...-...+|.+++  |++++.+......+.+. .+...+.|.++|+||+|+...
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~--Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILF--VMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEE--EEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEE--EEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence            479999999976643     1111244788777  99999988776666553 444457788999999998644

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.97  E-value=0.00034  Score=58.68  Aligned_cols=64  Identities=13%  Similarity=0.025  Sum_probs=41.7

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..  -.-..++|.+++  |++++++..-..  ...+..++..  ++|+++|.||+|+..
T Consensus        69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  138 (201)
T 2q3h_A           69 RLQLCDTAGQDEFDKLRPLCYTNTDIFLL--CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE  138 (201)
T ss_dssp             EEEEEECCCSTTCSSSGGGGGTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred             EEEEEECCCCHHHHHHhHhhcCCCcEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence            356889999999982  222456777777  999987432111  1233333332  678999999999964

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.97  E-value=0.00072  Score=57.74  Aligned_cols=64  Identities=19%  Similarity=0.066  Sum_probs=43.2

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCchh--HHHHHHHHHHc--CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVGM--TKEHLGLALAL--SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~~--t~~~l~l~~~l--~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..  -.-...+|.+++  |++++++..-.  ....+..++..  ++|+++|.||+|+..
T Consensus        76 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           76 ELSLWDTSGSPYYDNVRPLCYSDSDAVLL--CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT  145 (214)
T ss_dssp             EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred             EEEEEECCCCHhHHHHHHHHcCCCeEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence            467889999999982  222456788777  99998743221  23334444444  568888899999964

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.97  E-value=0.0002  Score=59.84  Aligned_cols=25  Identities=32%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      .++|+|+||||||||++.|. +.+.+
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~-~~l~~   32 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLI-PALCA   32 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH-Hhccc
Confidence            48999999999999999998 76543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.96  E-value=0.00035  Score=58.98  Aligned_cols=19  Identities=42%  Similarity=0.566  Sum_probs=17.7

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.|+||||||||||++.|.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~   22 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLF   22 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999886

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.96  E-value=0.0012  Score=63.46  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=58.4

Q ss_pred             ceEEEeCCCcchhh----------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHH
Q psy15138         15 AASVFETRIHERDD----------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVL   84 (320)
Q Consensus        15 ~~~~~d~pgh~~~~----------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~l   84 (320)
                      .+.++|+||++++.          .......+|.+++  |++++.+......+.+..+.  ..|.++|+||+|+.+....
T Consensus       273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~--VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~  348 (462)
T 3geh_A          273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLL--TIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLI  348 (462)
T ss_dssp             EEEECC--------------------CCCCSCSEEEE--EEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGS
T ss_pred             EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEE--EeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhh
Confidence            47789999997764          1234567888888  99999988776655444332  3589999999999876443


Q ss_pred             HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHc
Q psy15138         85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDN  130 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~  130 (320)
                      +        .+.. .....+ .+..+..+.+.++++...+......
T Consensus       349 ~--------~~~~-~~~~~~-~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          349 T--------SLEY-PENITQ-IVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             T--------TCCC-CTTCCC-EEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             H--------HHHH-hccCCc-EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            2        0110 011111 1224456677788888888776543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.96  E-value=0.00037  Score=63.27  Aligned_cols=27  Identities=41%  Similarity=0.445  Sum_probs=23.0

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++.+++|+|++|+|||||++.|. |..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~-g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLL-GQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHH-TCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHH-CCC
Confidence            344579999999999999999999 763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.96  E-value=0.00013  Score=59.68  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=41.2

Q ss_pred             ceEEEeCCCcchhhccC--CCCccchhhhccceecCCCCc-hhHHHHHH-HHHH--cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIV-GMTKEHLG-LALA--LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~--l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..+.  -...+|.+++  |++++.+.. ...++.+. +...  .++|+++|+||+|+.+
T Consensus        64 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  133 (179)
T 2y8e_A           64 RLQLWDTAGQERFRSLIPSYIRDSTVAVV--VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  133 (179)
T ss_dssp             EEEEEEECCSGGGGGGSHHHHHTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred             EEEEEECCCcHHHHHHHHHHhcCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence            47888999999998222  1345677777  999986432 12222332 2222  3568889999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.96  E-value=0.00062  Score=56.35  Aligned_cols=64  Identities=14%  Similarity=0.045  Sum_probs=41.1

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhH--HHHHHHHHH--cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALA--LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~--l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .-.-...+|.+++  |++++.+..-..  +..+..++.  -++|++++.||+|+..
T Consensus        56 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           56 ELSLWDTSGSPYYDNVRPLSYPDSDAVLI--CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             EEEEEECCCChhhhhhHHhhcCCCcEEEE--EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence            47788999999998  2223456777777  999986322111  122222222  2568888889999964

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.95  E-value=0.00058  Score=55.21  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             ceEEEeCCCcchhhc-cCC--CCccchhhhccceecCCCCc--hhHHHHHHHHHHc---CCCcEEEEeCCCCC
Q psy15138         15 AASVFETRIHERDDD-LPE--ASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL---SVPVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~-~~~--~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l---~i~~~v~lnk~Dl~   79 (320)
                      .+.++|+||+++|.. +..  ...+|.+++  |+++++...  ........+....   ++|.+++.||+|+.
T Consensus        52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  122 (169)
T 3q85_A           52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLI--VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA  122 (169)
T ss_dssp             EEEEECCCCC--------CHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred             EEEEEECCCccccchhhhhhhhccCCEEEE--EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence            366889999999972 332  334677777  999887321  1222222333333   67899999999986

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.95  E-value=0.00042  Score=56.60  Aligned_cols=64  Identities=13%  Similarity=0.001  Sum_probs=41.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH-----cCCC-cEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA-----LSVP-VFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~-----l~i~-~~v~lnk~Dl~~   80 (320)
                      .+.++|+|||++|.  .-.-...+|.+++  |++++++.. ...+..+..++.     -..| +++|.||+|+..
T Consensus        57 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           57 TLQIWDIGGQTIGGKMLDKYIYGAQGVLL--VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             EEEEEECTTCCTTCTTHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred             EEEEEECCCCccccchhhHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence            57889999999997  2222445677777  999987432 122223333322     2566 577889999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.93  E-value=0.00047  Score=56.06  Aligned_cols=64  Identities=14%  Similarity=-0.007  Sum_probs=35.0

Q ss_pred             ceEEEeCCCcchh--hcc--CCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc----CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERD--DDL--PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL----SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~--~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l----~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||++++  ..+  .-...+|.+++  |+++++... ...++.+..+...    ++|+++|.||+|+.+
T Consensus        53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~  125 (175)
T 2nzj_A           53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVI--VYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR  125 (175)
T ss_dssp             EEEEECCC-------CHHHHHTTTSCSEEEE--EEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred             EEEEEecCCCCccchhhhHHhhcccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence            4678899999994  322  12345677777  888876322 1122233223322    678999999999964

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.92  E-value=0.00019  Score=60.54  Aligned_cols=64  Identities=17%  Similarity=0.071  Sum_probs=41.6

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..  ......+|.+++  |++++.+..- ..+..+.-+..   -++|+++|+||+|+..
T Consensus        75 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  144 (200)
T 2o52_A           75 KLQIWDTAGQERFRSVTRSYYRGAAGALL--VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP  144 (200)
T ss_dssp             EEEEECCTTHHHHSCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred             EEEEEcCCCcHhHHHHHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence            578899999999982  222445677777  9999874321 12223322222   2568889999999853

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.91  E-value=0.00051  Score=57.39  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+++|+|++||||||+.+.|+
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La   31 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIA   31 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            6789999999999999999998

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=96.91  E-value=0.0014  Score=59.52  Aligned_cols=68  Identities=10%  Similarity=0.032  Sum_probs=43.0

Q ss_pred             ceEEEeCCCcchhh--ccCC-----CCccchhhhccceecCCCCchhHHHH-HH-HHHH----cCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPE-----ASPADHSMLQSKVGANAGIVGMTKEH-LG-LALA----LSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~-----~~~~d~~~l~~vv~a~~g~~~~t~~~-l~-l~~~----l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+||+++|.  ....     ...+|.+++  |+++++...-...+. .. +...    -++|.++++||+|+.+.
T Consensus        53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~--V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH--VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEE--EEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEE--EEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence            47788999999994  1111     135677777  999988653222211 11 2221    16789999999999875


Q ss_pred             hHH
Q psy15138         82 NVL   84 (320)
Q Consensus        82 ~~l   84 (320)
                      +..
T Consensus       131 ~~r  133 (307)
T 3r7w_A          131 DKR  133 (307)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            433

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.91  E-value=0.00048  Score=57.19  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |..++|.|++||||||+.+.|+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999998

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.91  E-value=0.00045  Score=56.23  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++|+||+||||||+.+.|.
T Consensus         3 ~I~l~G~~GsGKsT~a~~L~   22 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLLK   22 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999994

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.88  E-value=0.00029  Score=69.36  Aligned_cols=36  Identities=14%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      .|..++|+||||+|||||+++|+ +.+.+..|.+...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia-~~l~~~~~~i~~~  142 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIA-KSLGRKFVRISLG  142 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHH-HHHTCEEEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH-HhcCCCeEEEEec
Confidence            47889999999999999999999 8888777776554

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.88  E-value=0.0003  Score=60.21  Aligned_cols=65  Identities=14%  Similarity=0.155  Sum_probs=42.4

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCch-hHHHHH-HHHHHc-CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALAL-SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~l-~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||++|..+  .....+|.+++  |++++++..- ..+..+ .+.+.. ++|+++|+||+|+...
T Consensus        65 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  134 (221)
T 3gj0_A           65 KFNVWDTAGQEKFGGLRDGYYIQAQCAII--MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR  134 (221)
T ss_dssp             EEEEEEECSGGGTSCCCHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred             EEEEEeCCChHHHhHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence            4778899999999822  22345777777  9999874321 112222 333332 6699999999999653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.88  E-value=0.0001  Score=61.52  Aligned_cols=64  Identities=16%  Similarity=0.036  Sum_probs=42.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.|+|+||+++|.  ...-...+|.+++  |++++++.. ...++.+..++.   -++|+++|.||+|+..
T Consensus        73 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  142 (191)
T 3dz8_A           73 KLQIWDTAGQERYRTITTAYYRGAMGFIL--MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE  142 (191)
T ss_dssp             EEEEECHHHHHHCHHHHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEEeCCChHHHHHHHHHHHccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            48889999999998  2222445677777  999986322 222334444444   3567888889999853

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.87  E-value=0.00051  Score=57.70  Aligned_cols=21  Identities=38%  Similarity=0.657  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      .++|+|++||||||+.+.|+ .
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~-~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEIS-K   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-H
T ss_pred             EEEEECCCccCHHHHHHHHH-H
Confidence            58999999999999999998 5

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.86  E-value=0.00093  Score=55.54  Aligned_cols=59  Identities=14%  Similarity=-0.041  Sum_probs=38.2

Q ss_pred             eEEEeCCCcchhhccCCCCccchhhhccceecCCCCchhH-HHHHHHHHH----cCCCcEEEEeCCCCC
Q psy15138         16 ASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMT-KEHLGLALA----LSVPVFVVVTKIDMC   79 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~~~~~~~d~~~l~~vv~a~~g~~~~t-~~~l~l~~~----l~i~~~v~lnk~Dl~   79 (320)
                      +.++|+||+++|..   ...+|.+++  |+++++...-.. ...+.....    .++|++++.||+|+.
T Consensus        69 l~i~Dt~G~~~~~~---~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           69 LLIRDEGGPPELQF---AAWVDAVVF--VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             EEEEECSSSCCHHH---HHHCSEEEE--EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred             EEEEECCCChhhhe---ecCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            56689999999872   234577777  999987432221 222322222    356888889999983

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.00046  Score=59.79  Aligned_cols=42  Identities=14%  Similarity=0.029  Sum_probs=28.5

Q ss_pred             ccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        196 ESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       196 ~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      ..+-..|+.++|+||||||||||+..++.+..+.+.+.+.+.
T Consensus        17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            444445999999999999999996544414445444444444

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.84  E-value=0.0019  Score=60.17  Aligned_cols=53  Identities=11%  Similarity=0.118  Sum_probs=33.9

Q ss_pred             ceec-CCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcC
Q psy15138         44 KVGA-NAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKS   97 (320)
Q Consensus        44 vv~a-~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~   97 (320)
                      +|.. ..++.+...+.+..+ ..++|+++|+||+|+.+...+....+++...+..
T Consensus       152 ~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~  205 (361)
T 2qag_A          152 FISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTLKERERLKKRILDEIEE  205 (361)
T ss_dssp             EECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTC
T ss_pred             EEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            5554 556655554333222 1346899999999999887777666677776544

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.83  E-value=0.00059  Score=59.37  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +.+++|+|++||||||+.+.|+ +
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~-~   38 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIA-K   38 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHH-H
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-H
Confidence            7889999999999999999998 5

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.82  E-value=0.00051  Score=56.68  Aligned_cols=20  Identities=35%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|++||||||+.+.|+
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            37999999999999999998

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.82  E-value=0.00059  Score=67.92  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCC-ceeee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGR-GHARQ  236 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~-G~i~~  236 (320)
                      |+.+.|+||||+|||||+++|+ +.+++.. |.+.+
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia-~~l~~~~~~~~~~   94 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMA-ELLPTETLEDILV   94 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHH-HTSCCSSCEEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHh-ccCCcccCCeEEE
Confidence            6779999999999999999999 9998876 55544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.78  E-value=0.00066  Score=58.09  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..++|+|++||||||+.+.|+
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~   25 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFA   25 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999998

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.77  E-value=0.00035  Score=59.35  Aligned_cols=24  Identities=38%  Similarity=0.524  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      .++|.|++||||||+++.|. ..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~-~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLS-GAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHH-HHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH-HHHH
Confidence            48999999999999999998 6554

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.75  E-value=0.00031  Score=58.37  Aligned_cols=64  Identities=11%  Similarity=0.025  Sum_probs=41.2

Q ss_pred             ceEEEeCCCcchhh-ccC--CCCccchhhhccceecCCCCch-hHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD-DLP--EASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~~~--~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|. .+.  -...+|.+++  |++++.+..- ..++.+ .+.+.   .++|+++|+||+|+.+
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  141 (189)
T 1z06_A           70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVF--VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS  141 (189)
T ss_dssp             EEEEEECCCSHHHHTTTHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred             EEEEEECCCchhhhhhhhHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            47889999999996 221  1345677777  9999863221 112222 23333   3568899999999964

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.73  E-value=0.00082  Score=55.77  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..+.|+|++||||||+.+.|+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999998

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.73  E-value=0.00077  Score=55.39  Aligned_cols=20  Identities=25%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+.|.|++||||||+.+.|.
T Consensus         4 ~I~i~G~~GsGKST~a~~L~   23 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFI   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHH
Confidence            48999999999999999998

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.73  E-value=0.00074  Score=59.05  Aligned_cols=21  Identities=38%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+++|.||+||||||+.+.|+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999998

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.71  E-value=0.00079  Score=56.07  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..+.|+|++||||||+.+.|+
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALA   26 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999998

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.71  E-value=0.00085  Score=56.46  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |..++|+|+.||||||+.+.|. ..+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~-~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIM-ESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH-HTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHH-HHH
Confidence            5679999999999999999999 444

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.71  E-value=0.00061  Score=64.90  Aligned_cols=37  Identities=16%  Similarity=-0.046  Sum_probs=32.7

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      .+.+++++|+|||||||++..|+ +.+.+..+.+.+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA-~~l~~~g~~Vllvd  133 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLA-LYYKGKGRRPLLVA  133 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH-HHHHTTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH-HHHHHcCCeEEEee
Confidence            57889999999999999999999 99988888887653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.71  E-value=0.00075  Score=60.01  Aligned_cols=24  Identities=46%  Similarity=0.692  Sum_probs=21.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +++|+|++|||||||++.|+ |...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~-g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALT-GLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHH-TTCE
T ss_pred             EEEEECCCCCCHHHHHHHHh-CCCc
Confidence            58999999999999999999 7643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=96.70  E-value=0.0006  Score=61.77  Aligned_cols=64  Identities=14%  Similarity=0.049  Sum_probs=43.2

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHH--HHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTK--EHLGLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~--~~l~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      +.++|+||+++|.  .-.-...+|.+++  |++++++..-...  ..+..++..  ++|+++|.||+|+.+.
T Consensus       205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          205 LGLWDTAGLEDYDRLRPLSYPQTDVFLI--CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  274 (332)
T ss_dssp             EEEEEECCCGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred             EEEEeCCCchhhhHHHHHhccCCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence            4588999999998  2233567788877  9999874332111  233334433  6799999999998654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.69  E-value=0.0045  Score=52.03  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=62.1

Q ss_pred             ceEEEeCCCcch----------hh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         15 AASVFETRIHER----------DD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~----------~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      .+.++|+||+..          |.     .+......|.+++  ++++..+......+-...+...++|.+++.||+|+.
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~  150 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVV--LMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL  150 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence            577899999942          32     1111234566666  888888776554444556667788999999999998


Q ss_pred             ChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         80 PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        80 ~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      +....+..+..+...+..... .+.. +-...-+....+++...+.+.
T Consensus       151 s~~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          151 ASGARKAQLNMVREAVLAFNG-DVQV-ETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCS-CEEE-EECBTTTTBSHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhcCC-CCce-EEEeecCCCCHHHHHHHHHHH
Confidence            765433323444444332110 0111 112334555566666655544

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.69  E-value=0.0008  Score=56.50  Aligned_cols=21  Identities=38%  Similarity=0.702  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..++|+|++||||||+.+.|+
T Consensus         9 ~~I~i~G~~GsGKST~~~~La   29 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLR   29 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999999

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.68  E-value=0.00038  Score=61.93  Aligned_cols=104  Identities=13%  Similarity=0.044  Sum_probs=58.5

Q ss_pred             ceEEEeCCCcchhhc------cC----CCCccchhhhccceecCCCCchhHHHHHHHHHHcC-CCcEEEEeCCCCCChhH
Q psy15138         15 AASVFETRIHERDDD------LP----EASPADHSMLQSKVGANAGIVGMTKEHLGLALALS-VPVFVVVTKIDMCPPNV   83 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~------~~----~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~-i~~~v~lnk~Dl~~~~~   83 (320)
                      .+.++|+||+.+|..      +.    ....+|.+++  |+++..+.  .......-+..++ +|.++++||+|+.....
T Consensus        51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~--v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~  126 (271)
T 3k53_A           51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVD--IVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKG  126 (271)
T ss_dssp             EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEE--EEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred             eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEE--EecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence            478999999998752      11    1246788877  99998742  2222233334456 89999999999754322


Q ss_pred             HHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         84 LQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        84 le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      .....+.+...+.   +.-++    .+..+...+.++...+.....
T Consensus       127 ~~~~~~~l~~~lg---~~~~~----~Sa~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          127 AKIDIKKMRKELG---VPVIP----TNAKKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             CCCCHHHHHHHHS---SCEEE----CBGGGTBTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcC---CcEEE----EEeCCCCCHHHHHHHHHHHHh
Confidence            1111233333321   11111    223445566777666665543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.68  E-value=0.00082  Score=59.33  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .++|+||+|||||||.+.|+ ..
T Consensus         3 li~I~G~~GSGKSTla~~La-~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA-QE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HH
T ss_pred             EEEEECCCCcCHHHHHHHHH-hc
Confidence            47999999999999999998 44

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.68  E-value=0.00081  Score=55.64  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..+.|+|++||||||+.+.|+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            4568999999999999999998

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.67  E-value=0.00073  Score=62.38  Aligned_cols=108  Identities=13%  Similarity=-0.017  Sum_probs=59.6

Q ss_pred             CCceEEEeCCCcchhhccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLV   92 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~   92 (320)
                      ...+.|+|+||+.++.... ...+|.+++  |+++..+...+....    ...++|.++++||+|+.....++..++++.
T Consensus       148 ~~~i~liDTpG~~~~~~~~-~~~aD~vl~--Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~  220 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETEV-ARMVDCFIS--LQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMYE  220 (341)
T ss_dssp             TCSEEEEEEECCTTHHHHH-HTTCSEEEE--EECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHHHH-HHhCCEEEE--EEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHHHH
Confidence            3468999999998777211 367888877  888876532111111    123568999999999987655555555555


Q ss_pred             HhhcC--CCccc-cCccccccCCchhHHHHHHHHHHHH
Q psy15138         93 RILKS--PGCRK-VPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        93 ~~l~~--~~~~~-i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ..+..  ..... .+..+.....+.+.++++...+...
T Consensus       221 ~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          221 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence            53321  10010 1111223334556677766666544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.66  E-value=0.00046  Score=62.61  Aligned_cols=35  Identities=20%  Similarity=0.110  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      +.+++++|++|+||||++..|+ +.+.+..+.+.+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la-~~~~~~g~~v~l~  132 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLA-YFYKKKGFKVGLV  132 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHH-HHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HHHHHCCCeEEEE
Confidence            7889999999999999999999 8888777777664

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.64  E-value=0.00091  Score=55.52  Aligned_cols=20  Identities=35%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++|.|++||||||+.+.|.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~   22 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999998

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.63  E-value=0.001  Score=56.19  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |..++|.|++||||||+.+.|+ ..+
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~-~~l   28 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLK-DWI   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH-HHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH-HHH
Confidence            4568999999999999999998 443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.62  E-value=0.0015  Score=55.35  Aligned_cols=64  Identities=14%  Similarity=0.067  Sum_probs=41.1

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCch--hHHHHHHHHHH--cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALA--LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~--l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||+++|..  -.-...+|.+++  |++++....-  ..+..+..++.  -++|+++|.||+|+..
T Consensus        77 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~il--v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           77 ELSLWDTSGSPYYDNVRPLSYPDSDAVLI--CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             EEEEEeCCCcHhhhHHHHhhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence            478889999999982  222456777777  9998863211  11222222332  2568888889999964

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.62  E-value=0.00058  Score=61.80  Aligned_cols=67  Identities=9%  Similarity=0.025  Sum_probs=42.2

Q ss_pred             CceEEEeCCCcch-------------hh--ccCCCCccchhhhccceec-CCCCchhHH-HHHHHHHHcCCCcEEEEeCC
Q psy15138         14 NAASVFETRIHER-------------DD--DLPEASPADHSMLQSKVGA-NAGIVGMTK-EHLGLALALSVPVFVVVTKI   76 (320)
Q Consensus        14 ~~~~~~d~pgh~~-------------~~--~~~~~~~~d~~~l~~vv~a-~~g~~~~t~-~~l~l~~~l~i~~~v~lnk~   76 (320)
                      ..+.|+|+||+.+             |.  .......+|.+++  |+++ +.++..... +-+..+...+.|.++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil--vvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIV--AVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEE--EEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEE--EEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence            4699999999864             22  1111345676666  7775 666554332 33344444577999999999


Q ss_pred             CCCChh
Q psy15138         77 DMCPPN   82 (320)
Q Consensus        77 Dl~~~~   82 (320)
                      |+....
T Consensus       209 Dl~~~~  214 (315)
T 1jwy_B          209 DLMDKG  214 (315)
T ss_dssp             TSSCSS
T ss_pred             ccCCcc
Confidence            997543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.61  E-value=0.0013  Score=61.22  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcC-----------cCCCCCceeee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHG-----------ELDNGRGHARQ  236 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G-----------~l~~~~G~i~~  236 (320)
                      +.+++|+|.+|+|||||++.|+ +           ...|..|.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt-~~~~~v~~~p~tTi~p~~g~v~~   46 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALT-KAGIEAANYPFCTIEPNTGVVPM   46 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH-HTC------CCCCCCCCSSEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-CCCCcccCCCCceECceEEEEec
Confidence            4579999999999999999998 6           23455666554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.59  E-value=0.00077  Score=59.39  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +..+.|+|++||||||+.+.|. ..+.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~-~~l~   57 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQ-KEFQ   57 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHH-HHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HhcC
Confidence            5568999999999999999998 6553

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.59  E-value=0.001  Score=53.55  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|++|+|||||++.+. +..
T Consensus         4 ki~~vG~~~~GKSsli~~l~-~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG-GVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC-CC-
T ss_pred             EEEEECCCCCCHHHHHHHHc-Ccc
Confidence            58999999999999999998 654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.59  E-value=0.0011  Score=56.11  Aligned_cols=22  Identities=27%  Similarity=0.188  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |..++|.|++||||||+.+.|.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHH
Confidence            6679999999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.59  E-value=0.0011  Score=56.55  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+||+||||||+.+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999996

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.59  E-value=0.00012  Score=64.89  Aligned_cols=103  Identities=12%  Similarity=0.031  Sum_probs=56.5

Q ss_pred             CceEEEeCCCcchhhc----------cC----CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         14 NAASVFETRIHERDDD----------LP----EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~----------~~----~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      ..+.++|+||+.+|..          +.    ....+|.+++  |++++..  .....-......+++|+++++||+|+.
T Consensus        48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~--VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~  123 (256)
T 3iby_A           48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIIN--VIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIA  123 (256)
T ss_dssp             EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEE--EEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred             eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEE--EeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence            3578999999988741          11    0156888877  9999861  111112223334567999999999986


Q ss_pred             ChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         80 PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        80 ~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      .....+...+++...+.   |.-+    -.+..+.++++++...+.+.
T Consensus       124 ~~~~~~~~~~~l~~~lg---~~vi----~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          124 EHRGISIDTEKLESLLG---CSVI----PIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHTTCEECHHHHHHHHC---SCEE----ECBGGGTBSHHHHHHHHHTC
T ss_pred             CcCCcHHHHHHHHHHcC---CCEE----EEECCCCCCHHHHHHHHHhh
Confidence            43322222233333321   2111    12234455666666665443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.57  E-value=0.00087  Score=62.45  Aligned_cols=28  Identities=32%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      +++|+|++|+|||||++.|. +...+..+
T Consensus        39 ~I~vvG~~g~GKSTLln~L~-~~~~~~~~   66 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLF-LTDLYPER   66 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHT-TCCC----
T ss_pred             EEEEEcCCCCCHHHHHHHHh-CCCCCCCC
Confidence            37999999999999999988 66444333

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.56  E-value=0.0007  Score=63.52  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |++++|+||+|+|||||++.|+ +..
T Consensus       174 GQr~~IvG~sG~GKTtLl~~Ia-r~i  198 (422)
T 3ice_A          174 GQRGLIVAPPKAGKTMLLQNIA-QSI  198 (422)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHH-HHH
T ss_pred             CcEEEEecCCCCChhHHHHHHH-HHH
Confidence            9999999999999999999998 554

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.55  E-value=0.00074  Score=60.49  Aligned_cols=67  Identities=10%  Similarity=0.020  Sum_probs=41.4

Q ss_pred             CceEEEeCCCcch-------------hh-ccCC-CCccchhhhccceecCCCCchhHH-HHHHHHHHcCCCcEEEEeCCC
Q psy15138         14 NAASVFETRIHER-------------DD-DLPE-ASPADHSMLQSKVGANAGIVGMTK-EHLGLALALSVPVFVVVTKID   77 (320)
Q Consensus        14 ~~~~~~d~pgh~~-------------~~-~~~~-~~~~d~~~l~~vv~a~~g~~~~t~-~~l~l~~~l~i~~~v~lnk~D   77 (320)
                      ..+.|+|+||+.+             |. +... ...+|.++ ++|++++.+...+.. +.+..+...+.|.++|+||+|
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-l~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D  203 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI-LAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD  203 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE-EEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE-EEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence            5789999999642             22 1111 11333222 238899887776653 233444445679999999999


Q ss_pred             CCCh
Q psy15138         78 MCPP   81 (320)
Q Consensus        78 l~~~   81 (320)
                      +.+.
T Consensus       204 l~~~  207 (299)
T 2aka_B          204 LMDE  207 (299)
T ss_dssp             GSCT
T ss_pred             cCCC
Confidence            9754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.55  E-value=0.0012  Score=54.99  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..++|+|++||||||+.+.|+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4569999999999999999998

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.54  E-value=0.0013  Score=53.27  Aligned_cols=23  Identities=30%  Similarity=0.661  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|++|+|||||++.+. +..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~-~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFA-GKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-CC-
T ss_pred             EEEEECCCCccHHHHHHHHh-cCC
Confidence            58999999999999999998 543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.52  E-value=0.0011  Score=59.64  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +..+.|.|||||||||+.+.|. ..+
T Consensus        33 ~~livl~G~sGsGKSTla~~L~-~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIF-EET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHH-HHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HHh
Confidence            4568999999999999999998 443

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.52  E-value=0.0014  Score=52.85  Aligned_cols=23  Identities=43%  Similarity=0.642  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|++|+|||||++.+. +..
T Consensus         4 ki~ivG~~~~GKSsli~~l~-~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG-GLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-CC-
T ss_pred             EEEEECCCCCCHHHHHHHHH-hcc
Confidence            58999999999999999998 543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.51  E-value=0.0013  Score=56.10  Aligned_cols=20  Identities=25%  Similarity=0.278  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+||+||||||+.+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999997

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.51  E-value=0.0013  Score=54.91  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .-+++++|++|+|||||++.+.
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~   44 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLK   44 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999999998

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.51  E-value=0.0014  Score=54.54  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..++|+|++||||||+.+.|+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999987

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.0014  Score=52.76  Aligned_cols=21  Identities=43%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++++|+.|+|||||++.+. +
T Consensus         5 ~i~v~G~~~~GKssli~~l~-~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFV-K   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-T
T ss_pred             EEEEECCCCCCHHHHHHHHH-c
Confidence            58999999999999999998 5

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.50  E-value=0.0013  Score=54.47  Aligned_cols=24  Identities=46%  Similarity=0.695  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .-+++|+|++|+|||||++.+. +.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~-~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLA-SE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC-CS
T ss_pred             ceEEEEECCCCCCHHHHHHHHh-cC
Confidence            3468999999999999999999 55

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.49  E-value=0.0014  Score=52.62  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~   26 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYC   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999999998

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.49  E-value=0.002  Score=53.41  Aligned_cols=24  Identities=38%  Similarity=0.689  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++|+|++|+|||||++.+..+.
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            458999999999999997665354

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.49  E-value=0.0014  Score=55.52  Aligned_cols=22  Identities=32%  Similarity=0.229  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |..++|.|+.||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            5679999999999999999998

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.0011  Score=54.92  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++|+|++|+|||||++.+. +.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~-~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLT-TD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH-HS
T ss_pred             CEEEEECCCCCCHHHHHHHHh-cC
Confidence            358999999999999999998 54

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.48  E-value=0.00082  Score=62.52  Aligned_cols=40  Identities=23%  Similarity=0.108  Sum_probs=31.8

Q ss_pred             ccc-cCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        194 RVE-SQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       194 ~l~-~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      .+. .+...|+.+.|.||+|||||||+..++ ....+..|.+
T Consensus        52 ~Lg~GGi~~G~i~~I~GppGsGKSTLal~la-~~~~~~gg~V   92 (356)
T 3hr8_A           52 ATGVGGYPRGRIVEIFGQESSGKTTLALHAI-AEAQKMGGVA   92 (356)
T ss_dssp             HTSSSSEETTEEEEEEESTTSSHHHHHHHHH-HHHHHTTCCE
T ss_pred             HhccCCccCCcEEEEECCCCCCHHHHHHHHH-HHHHhcCCeE
Confidence            344 344459999999999999999999999 7776666655

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.46  E-value=0.0015  Score=54.59  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..++|+|++||||||+.+.|+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~   33 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLV   33 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4468999999999999999998

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.46  E-value=0.0015  Score=55.04  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .++|.|++||||||+.+.|+ ..
T Consensus         4 ~i~i~G~~GsGKst~~~~la-~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVA-AA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            58999999999999999998 54

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.45  E-value=0.0065  Score=55.37  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHh
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|.-++|+|+||+|||||...|.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~  165 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELI  165 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            36679999999999999998777

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.45  E-value=0.0015  Score=54.13  Aligned_cols=24  Identities=29%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      .++|+|++|||||||+..|. ..+.
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~-~~l~   29 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWV-AAAV   29 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH-HhhH
Confidence            48999999999999999888 6654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.45  E-value=0.0014  Score=53.30  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|++|+|||||++.+. +.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~-~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFA-DN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHC-SC
T ss_pred             EEEEECCCCCCHHHHHHHHh-cC
Confidence            48999999999999999998 54

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.44  E-value=0.001  Score=62.41  Aligned_cols=35  Identities=14%  Similarity=-0.038  Sum_probs=28.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      +..++|+||+|||||||++.|. +...+..+.+.+.
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~-~~~~~~~~~~~~~   69 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLL-LREYMQGSRVIII   69 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH-HHHHTTTCCEEEE
T ss_pred             cCceEEEcCCCCCHHHHHHHHH-HHHHHCCCEEEEE
Confidence            5568999999999999999999 7666666666553

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.43  E-value=0.0016  Score=54.11  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      --+++|+|+.|+|||||++.+. +.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~-~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLI-NR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHH-TC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CC
Confidence            3468999999999999999998 54

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.43  E-value=0.0017  Score=52.02  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++++|+.|+|||||++.+..+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999988733

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.42  E-value=0.0013  Score=52.47  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|+.|+|||||++.+. +.
T Consensus         3 ki~v~G~~~~GKSsli~~l~-~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLL-KK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HC
T ss_pred             EEEEECCCCCCHHHHHHHHh-CC
Confidence            58999999999999999998 44

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.42  E-value=0.0016  Score=58.17  Aligned_cols=23  Identities=35%  Similarity=0.768  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|++|+|||||++.++ |..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~-g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLIT-GHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-CCC
T ss_pred             EEEEECCCCCCHHHHHHHHH-CCC
Confidence            58999999999999999999 753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.41  E-value=0.0017  Score=52.90  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLS   21 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.41  E-value=0.0016  Score=53.78  Aligned_cols=23  Identities=43%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++|+|+.|+|||||++.+. +.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~-~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALF-NR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH-TS
T ss_pred             eEEEEECCCCCCHHHHHHHHH-cC
Confidence            368999999999999999998 54

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.41  E-value=0.0039  Score=51.48  Aligned_cols=113  Identities=16%  Similarity=0.074  Sum_probs=59.8

Q ss_pred             CceEEEeCCCcchhhccCC--CCccchhhhccceecCCCCc--hhHHHHHHHHHH--cCCCcEEEEeCCCCCChhHHHHH
Q psy15138         14 NAASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIV--GMTKEHLGLALA--LSVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~--l~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      -.+.++|+||.++|..+..  ..+.|.+++  |++.+++..  ...++.+.-++.  -++|+++|.||+|+.+.......
T Consensus        56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  133 (184)
T 2zej_A           56 LVLNVWDFAGREEFYSTHPHFMTQRALYLA--VYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKAC  133 (184)
T ss_dssp             CEEEEEEECSHHHHHTTSHHHHHHSEEEEE--EEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHH
T ss_pred             eEEEEEecCCCHHHHHhhHHHccCCcEEEE--EEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHH
Confidence            3578889999999983221  123455555  888877532  122233332222  25677888899999876444333


Q ss_pred             HHHHHHhhc-CCCccccCcccc-ccCCch-hHHHHHHHHHHHHHH
Q psy15138         88 LKLLVRILK-SPGCRKVPVMNC-LISPTE-EQFDLLQKKIKSLID  129 (320)
Q Consensus        88 l~~~~~~l~-~~~~~~i~~kl~-~~~gny-d~~~~l~~q~~~~~~  129 (320)
                      ..+....+. ...+... .... .+..+. +.++++...+.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          134 MSKITKELLNKRGFPAI-RDYHFVNATEESDALAKLRKTIINESL  177 (184)
T ss_dssp             HHHHHHHTTTCTTSCEE-EEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcch-hheEEEecccCchhHHHHHHHHHHHHh
Confidence            222222222 1222210 0111 222333 578888888776544

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.41  E-value=0.0014  Score=55.20  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      .-+++++|++|+|||||++.+. +
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~-~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLK-D   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHS-C
T ss_pred             CcEEEEECCCCCCHHHHHHHHh-c
Confidence            4468999999999999999998 5

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.41  E-value=0.0018  Score=52.73  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .-+++|+|++|+|||||++.+.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~   29 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIR   29 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4568999999999999999998

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.41  E-value=0.004  Score=59.37  Aligned_cols=108  Identities=17%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             ceEEEeCCCcchhhccC--------------CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDLP--------------EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~--------------~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.++|+||.+++..+.              ....+|.+++  |+++..+...+..+-...+...+.|.++++||+|+..
T Consensus       229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vll--v~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~  306 (439)
T 1mky_A          229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVI--VLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV  306 (439)
T ss_dssp             EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred             EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence            46788999997665211              1223466666  8999988876654444556667889999999999975


Q ss_pred             hhH--HHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         81 PNV--LQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        81 ~~~--le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ...  .+++.+++...+..  ....+. +..+..+..+..++...+.+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~SA~~g~gv~~l~~~i~~~  352 (439)
T 1mky_A          307 HREKRYDEFTKLFREKLYF--IDYSPL-IFTSADKGWNIDRMIDAMNLA  352 (439)
T ss_dssp             TGGGCHHHHHHHHHHHCGG--GTTSCE-EECBTTTTBSHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcc--CCCCcE-EEEECCCCCCHHHHHHHHHHH
Confidence            432  44444444443221  111121 123345556666666665543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.40  E-value=0.0008  Score=59.61  Aligned_cols=104  Identities=18%  Similarity=0.061  Sum_probs=0.0

Q ss_pred             ceEEEeCCCcchh----------hccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHH
Q psy15138         15 AASVFETRIHERD----------DDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVL   84 (320)
Q Consensus        15 ~~~~~d~pgh~~~----------~~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~l   84 (320)
                      .+.++|+||+.+|          ...-....+|.+++  |++++.  .........-...+++|.++++||+|+......
T Consensus        53 ~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~--V~D~t~--~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i  128 (258)
T 3a1s_A           53 TINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIL--VADSVN--PEQSLYLLLEILEMEKKVILAMTAIDEAKKTGM  128 (258)
T ss_dssp             EEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEE--EEETTS--CHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred             EEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEE--EeCCCc--hhhHHHHHHHHHhcCCCEEEEEECcCCCCccch


Q ss_pred             HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      ....+++...+.-+.+.       .+..+...++++...+.....
T Consensus       129 ~~~~~~l~~~lg~~vi~-------~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          129 KIDRYELQKHLGIPVVF-------TSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CBCHHHHHHHHCSCEEE-------CCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEE-------EEeeCCcCHHHHHHHHHHHhh

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.40  E-value=0.0017  Score=51.82  Aligned_cols=20  Identities=40%  Similarity=0.456  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~   24 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.39  E-value=0.0037  Score=58.90  Aligned_cols=24  Identities=46%  Similarity=0.779  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      -+++++|+.|+|||||++.|. |..
T Consensus         9 ~~I~vvG~~~~GKSTLi~~L~-~~~   32 (403)
T 3sjy_A            9 VNIGVVGHVDHGKTTLVQAIT-GIW   32 (403)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHh-Ccc
Confidence            358999999999999999999 754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.39  E-value=0.0018  Score=51.85  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~   25 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.39  E-value=0.0017  Score=53.48  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|++|+|||||++.+. +.
T Consensus         3 ki~v~G~~~~GKSsli~~l~-~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLT-GK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHh-Cc
Confidence            58999999999999999998 54

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.38  E-value=0.0041  Score=50.68  Aligned_cols=58  Identities=10%  Similarity=-0.110  Sum_probs=36.8

Q ss_pred             eEEEeCCCcchhhccCCCCccchhhhccceecCCCCchh-HHHHH-HHHHH-----cCCCcEEEEeCCCC
Q psy15138         16 ASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGM-TKEHL-GLALA-----LSVPVFVVVTKIDM   78 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l-~l~~~-----l~i~~~v~lnk~Dl   78 (320)
                      +.++|+||++++.-+   .++|.+++  |++++++..-. ....+ .+...     -++|+++|.||+|+
T Consensus        56 l~i~Dt~G~~~~~~~---~~~d~~il--v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  120 (178)
T 2iwr_A           56 VLIREEAGAPDAKFS---GWADAVIF--VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI  120 (178)
T ss_dssp             EEEEECSSSCCHHHH---HHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred             EEEEECCCCchhHHH---HhCCEEEE--EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            677899999986632   23677777  99988743211 11122 12222     25688888899998

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.38  E-value=0.0017  Score=53.87  Aligned_cols=20  Identities=30%  Similarity=0.233  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++|.|+.||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~   21 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLY   21 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999998

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.38  E-value=0.0013  Score=53.92  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .-+++++|++|+|||||++.+.
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4469999999999999999998

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.37  E-value=0.0015  Score=53.29  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++|+|++||||||+.+.|+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999998

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.37  E-value=0.0014  Score=52.74  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~   24 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFV   24 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999999998

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.36  E-value=0.0015  Score=52.60  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|+.|+|||||++.+. +.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~-~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFV-ED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HS
T ss_pred             EEEEECcCCCCHHHHHHHHH-cC
Confidence            58999999999999999998 44

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.36  E-value=0.002  Score=51.73  Aligned_cols=20  Identities=20%  Similarity=0.489  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~   24 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999887

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.35  E-value=0.002  Score=51.74  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++++|+.|+|||||++.+..+
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999833

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.34  E-value=0.002  Score=51.99  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|++|+|||||++.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~   27 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999999988

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.32  E-value=0.0021  Score=52.31  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~   28 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999998

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.31  E-value=0.00045  Score=57.09  Aligned_cols=106  Identities=14%  Similarity=0.087  Sum_probs=55.9

Q ss_pred             ceEEEeCCCcchhhc------cC----CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHH
Q psy15138         15 AASVFETRIHERDDD------LP----EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVL   84 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~------~~----~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~l   84 (320)
                      .+.++|+||+++|..      +.    ....+|.+++  |+++..  .....+.+..+...++|.+++.||+|+.....+
T Consensus        55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~  130 (188)
T 2wjg_A           55 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN--IVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGI  130 (188)
T ss_dssp             EEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEE--EEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred             EEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEE--Eecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccc
Confidence            477899999998831      00    0123566655  888764  122233444445567799999999998533211


Q ss_pred             HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138         85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG  131 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~  131 (320)
                      ....+++...+.   +   ++ +..+..+.+.++++...+.....+.
T Consensus       131 ~~~~~~~~~~~~---~---~~-~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          131 EIDVDKLEKILG---V---KV-VPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             CCCHHHHHHHHT---S---CE-EECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHhC---C---Ce-EEEEecCCCCHHHHHHHHHHHHHhc
Confidence            111222322211   1   11 1122344556777766666554433

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.31  E-value=0.0016  Score=53.76  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..+.|.|++||||||+.+.|+
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999997

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.31  E-value=0.0021  Score=52.38  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~   29 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYV   29 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999887

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.31  E-value=0.0016  Score=53.03  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -+++|+|+.|+|||||++.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~   30 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFI   30 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999988

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.30  E-value=0.0018  Score=53.57  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      -+++|+|+.|+|||||++.+. |...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~-~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIY-SKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH-HTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-hhcc
Confidence            358999999999999999998 6543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.30  E-value=0.0018  Score=53.61  Aligned_cols=20  Identities=35%  Similarity=0.428  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|++||||||+.+.|+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999997

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.28  E-value=0.0021  Score=55.35  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+++|+|++||||||+.+.|+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3568999999999999999998

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.28  E-value=0.0022  Score=54.28  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+++|+|+.||||||+.+.|.
T Consensus        13 ~iIgltG~~GSGKSTva~~L~   33 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILK   33 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.27  E-value=0.0021  Score=53.21  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..++|+|++||||||+.+.|+
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999997

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.26  E-value=0.0024  Score=53.83  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+++|+|+.||||||+.+.|+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5679999999999999999998

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.26  E-value=0.0023  Score=54.73  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+++|+|+.||||||+.+.|+
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999998

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.25  E-value=0.002  Score=55.29  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..+.|+||+||||||+.+.|+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999998

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.25  E-value=0.0019  Score=53.55  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++|+|+.|+|||||++.+. +.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~-~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLT-KD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH-HS
T ss_pred             eEEEEECCCCCCHHHHHHHHH-hC
Confidence            358999999999999999998 44

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.24  E-value=0.0022  Score=56.25  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|+|.|++||||||+.+.|.
T Consensus        24 iI~I~G~~GSGKST~a~~L~   43 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIV   43 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999997

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.23  E-value=0.0022  Score=52.13  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|+.|+|||||++.+.
T Consensus         8 ki~v~G~~~~GKssl~~~l~   27 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFA   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999999998

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.23  E-value=0.0012  Score=62.96  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                      +.+++++||+||||||++..|+ ..+.+..+.+.+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA-~~l~~~G~kVll  130 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLA-YFYKKRGYKVGL  130 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHH-HHHHHTTCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HHHHHcCCeEEE
Confidence            6679999999999999999999 888777676655

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.23  E-value=0.0024  Score=53.79  Aligned_cols=22  Identities=32%  Similarity=0.291  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ...++|.|++||||||+.+.|+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999997

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.22  E-value=0.0025  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++++|+.|+|||||++.+..+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998833

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.22  E-value=0.0025  Score=51.05  Aligned_cols=20  Identities=45%  Similarity=0.557  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|++|+|||||++.+.
T Consensus         2 ki~~~G~~~~GKssl~~~l~   21 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLK   21 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999997

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.21  E-value=0.0025  Score=52.33  Aligned_cols=20  Identities=40%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~   25 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLI   25 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.21  E-value=0.002  Score=53.45  Aligned_cols=20  Identities=35%  Similarity=0.675  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|++|+|||||++.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~   46 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFT   46 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHh
Confidence            48999999999999999988

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.20  E-value=0.0021  Score=59.91  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=20.2

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.....+|+|||||||||++-.|.
T Consensus        23 f~~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           23 FEKGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHH
Confidence            444568999999999999998875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.20  E-value=0.0026  Score=51.29  Aligned_cols=24  Identities=42%  Similarity=0.612  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++++|++|+|||||++.+..+.
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            458999999999999999997333

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.20  E-value=0.0021  Score=53.86  Aligned_cols=22  Identities=45%  Similarity=0.696  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|++|+|||||++.+. |.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~-~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFG-GL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTC-CE
T ss_pred             EEEEECCCCCCHHHHHHHHH-hc
Confidence            58999999999999999997 54

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.20  E-value=0.0022  Score=57.10  Aligned_cols=22  Identities=41%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|++|+|||||++.|. +.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~-~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLF-LT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHS-SS
T ss_pred             EEEEECCCCCCHHHHHHHHh-CC
Confidence            48999999999999999987 54

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.0042  Score=61.89  Aligned_cols=29  Identities=24%  Similarity=0.638  Sum_probs=24.2

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..|+.++....+.++++  .|.+++||
T Consensus       248 ~iiDTPG~e~f~~~~~~~~~~--aD~~llVV  276 (611)
T 3izq_1          248 TIVDAPGHRDFVPNAIMGISQ--ADMAILCV  276 (611)
T ss_dssp             EEEECCSSSCHHHHHTTTSSC--CSEEEEEE
T ss_pred             EEEECCCCcccHHHHHHHHhh--cCceEEEE
Confidence            467888888888888888887  89998876

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.19  E-value=0.016  Score=53.56  Aligned_cols=104  Identities=12%  Similarity=0.095  Sum_probs=58.7

Q ss_pred             ceEEEeCCCcchhhc----------c-CCCCccchhhhccceecCCCC--chhH-HHHH-HHHHHc-CCCcEEEEeCCCC
Q psy15138         15 AASVFETRIHERDDD----------L-PEASPADHSMLQSKVGANAGI--VGMT-KEHL-GLALAL-SVPVFVVVTKIDM   78 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~----------~-~~~~~~d~~~l~~vv~a~~g~--~~~t-~~~l-~l~~~l-~i~~~v~lnk~Dl   78 (320)
                      .+.++|+||+.++.+          + .-...+|..++  |+++..+.  .... .+-+ .+.... +.|.++|+||+|+
T Consensus       215 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ill--V~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl  292 (357)
T 2e87_A          215 RYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIY--IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV  292 (357)
T ss_dssp             EEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEE--EECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred             eEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEE--EEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence            367889999976531          0 11234677766  99977643  2222 2222 333334 6799999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138         79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI  128 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~  128 (320)
                      .+...+++..+....    ..   +++ +..+..+.++++++...+.+.+
T Consensus       293 ~~~~~~~~~~~~~~~----~~---~~~-~~iSA~~g~gi~~l~~~i~~~l  334 (357)
T 2e87_A          293 ADEENIKRLEKFVKE----KG---LNP-IKISALKGTGIDLVKEEIIKTL  334 (357)
T ss_dssp             CCHHHHHHHHHHHHH----TT---CCC-EECBTTTTBTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHh----cC---CCe-EEEeCCCCcCHHHHHHHHHHHH
Confidence            887655443332221    11   111 1123355667777777666554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.19  E-value=0.0017  Score=54.19  Aligned_cols=74  Identities=11%  Similarity=0.037  Sum_probs=0.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCC-----CCchhHHHHHHHHHHcCCCcEEEEeCCCCCC-----hh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANA-----GIVGMTKEHLGLALALSVPVFVVVTKIDMCP-----PN   82 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~-----g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~-----~~   82 (320)
                      .+.++|+||+++ .  ...-...+|.+++  |+++++     .......+-.......++|+++|.||+|+..     .+
T Consensus        77 ~~~l~Dt~G~~~-~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~  153 (196)
T 2atv_A           77 SMEILDTAGQED-TIQREGHMRWGEGFVL--VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE  153 (196)
T ss_dssp             EEEEEECCCCCC-CHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEECCCCCc-ccchhhhhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHH


Q ss_pred             HHHHHHHHH
Q psy15138         83 VLQDTLKLL   91 (320)
Q Consensus        83 ~le~~l~~~   91 (320)
                      ..+++.+++
T Consensus       154 ~~~~~~~~~  162 (196)
T 2atv_A          154 EGEKLATEL  162 (196)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.19  E-value=0.0026  Score=52.33  Aligned_cols=20  Identities=25%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|+.|+|||||++.+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~   32 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYT   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999998

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.19  E-value=0.0025  Score=51.70  Aligned_cols=20  Identities=20%  Similarity=0.517  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|+.|+|||||++.+.
T Consensus        16 ~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999987

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=96.19  E-value=0.0017  Score=63.56  Aligned_cols=63  Identities=19%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             CceEEEeCCCcchhhccCC--CCccchhhhccceecCCCCchhHHHHHHHHHHcC--CCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIVGMTKEHLGLALALS--VPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~--i~~~v~lnk~Dl~~   80 (320)
                      ..+.++|+||+++|..+.-  ...+|.+++  |+++..+  .....-+..++..+  +|.++|.||+|+..
T Consensus        98 ~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~--V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~  164 (535)
T 3dpu_A           98 CLFHFWDFGGQEIMHASHQFFMTRSSVYML--LLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP  164 (535)
T ss_dssp             CEEEEECCCSCCTTTTTCHHHHHSSEEEEE--EECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred             EEEEEEECCcHHHHHHHHHHHccCCcEEEE--EEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence            4588999999999982211  224666666  8988764  33333445555554  79999999999964

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.18  E-value=0.0033  Score=53.15  Aligned_cols=24  Identities=29%  Similarity=0.648  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|++|+|||||++.+..+..
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~~   51 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGLF   51 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC
Confidence            589999999999999998873443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.17  E-value=0.0028  Score=51.68  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..++|+|+.||||||+.+.|+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999998

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.16  E-value=0.0019  Score=65.04  Aligned_cols=32  Identities=34%  Similarity=0.418  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCcee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHA  234 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i  234 (320)
                      +.+++|+|++|+|||||++.|. +...+  ..|.+
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~-~~~~~~~~~G~V   42 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALL-YKTGAKERRGRV   42 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH-HHTTSSSSCCCG
T ss_pred             CcEEEEECCCCChHHHHHHHHH-HhcCCCCcccee
Confidence            6779999999999999999998 76554  45665

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.15  E-value=0.0026  Score=54.24  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|+.||||||+.+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.14  E-value=0.0022  Score=59.33  Aligned_cols=110  Identities=13%  Similarity=0.013  Sum_probs=59.7

Q ss_pred             CceEEEeCCCcchh----h-----ccCCCCccchhhhccceecCCC--Cchh--HHHHHHHHHH-----cCCCcEEEEeC
Q psy15138         14 NAASVFETRIHERD----D-----DLPEASPADHSMLQSKVGANAG--IVGM--TKEHLGLALA-----LSVPVFVVVTK   75 (320)
Q Consensus        14 ~~~~~~d~pgh~~~----~-----~~~~~~~~d~~~l~~vv~a~~g--~~~~--t~~~l~l~~~-----l~i~~~v~lnk   75 (320)
                      ..+.++|+||+.+.    .     .+.....+|.+++  |++++..  ..+.  ....+.-++.     ...|.++|+||
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~--VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK  283 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH--VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANK  283 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE--EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEEC
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEE--EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEEC
Confidence            35778899996441    1     1111233566666  9998752  2222  1222222222     35689999999


Q ss_pred             CCCCChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCcc
Q psy15138         76 IDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRG  133 (320)
Q Consensus        76 ~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~~  133 (320)
                      +|+....   +.++++.+.+...    .++ +..++.+.+.++++...+.+.+.+...
T Consensus       284 ~Dl~~~~---e~~~~l~~~l~~~----~~v-~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          284 MDMPEAA---ENLEAFKEKLTDD----YPV-FPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             TTSTTHH---HHHHHHHHHCCSC----CCB-CCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             ccCCCCH---HHHHHHHHHhhcC----CCE-EEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            9997653   2334444443211    111 113345666788888888777655443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.14  E-value=0.0024  Score=59.19  Aligned_cols=25  Identities=40%  Similarity=0.458  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .-+++++|++|+|||||++.|+ |..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~-~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALT-TAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHC-SSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCC
Confidence            3468999999999999999999 754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.14  E-value=0.0024  Score=55.94  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +.|.||+|+|||||++.|+ +.+.
T Consensus        48 vll~G~~GtGKT~la~~la-~~~~   70 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIA-GEAK   70 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HHHT
T ss_pred             EEEECcCCCCHHHHHHHHH-HHcC
Confidence            7899999999999999999 6653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.14  E-value=0.0049  Score=53.88  Aligned_cols=68  Identities=10%  Similarity=-0.020  Sum_probs=42.2

Q ss_pred             CceEEEeCCCcchhhcc--------CCCCccchhhhccceecCCCCchhHHHH-----HHHHHHcCCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHERDDDL--------PEASPADHSMLQSKVGANAGIVGMTKEH-----LGLALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~~--------~~~~~~d~~~l~~vv~a~~g~~~~t~~~-----l~l~~~l~i~~~v~lnk~Dl~~   80 (320)
                      ..+.|+|+||..++...        ...  .| .+++.++++..+..+.....     .......++|.++|+||+|+.+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence            36889999999887522        112  34 44444777765554433221     1223345789999999999987


Q ss_pred             hhHH
Q psy15138         81 PNVL   84 (320)
Q Consensus        81 ~~~l   84 (320)
                      ....
T Consensus       186 ~~~~  189 (262)
T 1yrb_A          186 EEEK  189 (262)
T ss_dssp             HHHH
T ss_pred             cccH
Confidence            6543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.14  E-value=0.0027  Score=56.14  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|++|+|||||++.|+ |..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~-g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALT-NAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHH-TTS
T ss_pred             EEEEECCCCCCHHHHHHHHH-CCC
Confidence            58999999999999999999 763

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.13  E-value=0.0029  Score=51.73  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -+++|+|+.|+|||||++.+.
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~   39 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFM   39 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999999998

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.13  E-value=0.0029  Score=52.05  Aligned_cols=24  Identities=42%  Similarity=0.707  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .-+++++|+.|+|||||++.+. +.
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~-~~   41 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFN-GE   41 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHT-TC
T ss_pred             eeEEEEECCCCCCHHHHHHHHh-cC
Confidence            3458999999999999999998 53

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.13  E-value=0.0015  Score=58.93  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=16.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -.++|.||+||||||+.+.|.
T Consensus         6 ~iIgItG~sGSGKSTva~~L~   26 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFD   26 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999998

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.12  E-value=0.0018  Score=55.05  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .-+++|+|++|+|||||++.|. +..
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~-~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLC-NQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHT-TCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHh-CCC
Confidence            3469999999999999999999 653

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.12  E-value=0.0029  Score=55.36  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+++|+||+||||||+.+.|+
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3458999999999999999997

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.11  E-value=0.0028  Score=55.67  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      -+|+|+|++|+|||||++.|. |..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~-~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSIL-RKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-TSC
T ss_pred             eEEEEECCCCCCHHHHHHHHh-CCC
Confidence            358999999999999999998 653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.0031  Score=51.40  Aligned_cols=20  Identities=35%  Similarity=0.571  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|++|+|||||++.+.
T Consensus        12 ~i~v~G~~~~GKssli~~l~   31 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFK   31 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999999988

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.11  E-value=0.0029  Score=54.49  Aligned_cols=20  Identities=20%  Similarity=0.350  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|.|++||||||+.+.|+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999998

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.10  E-value=0.0031  Score=51.66  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -+++|+|+.|+|||||++.+.
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999988

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.09  E-value=0.0031  Score=52.06  Aligned_cols=21  Identities=38%  Similarity=0.423  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -+++++|+.|+|||||++.+.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~   42 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLI   42 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            358999999999999999998

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.09  E-value=0.0043  Score=60.27  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=26.4

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      +.|+||||+|||||+++|+ +...  .+.+.++.
T Consensus        67 vLL~GppGtGKTtLaraIa-~~~~--~~~i~i~g   97 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVA-GEAR--VPFITASG   97 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHH-HHTT--CCEEEEEG
T ss_pred             EEEECCCCCCHHHHHHHHH-HHhC--CCEEEEeh
Confidence            8999999999999999999 8764  66676654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.09  E-value=0.0032  Score=51.08  Aligned_cols=20  Identities=35%  Similarity=0.645  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|+.|+|||||++.+.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~   36 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFT   36 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.09  E-value=0.0028  Score=56.84  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..+|+|+|++||||||+.+.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999997

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.08  E-value=0.0033  Score=51.60  Aligned_cols=20  Identities=40%  Similarity=0.622  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+|+.|+|||||++.+.
T Consensus        12 ki~v~G~~~~GKSsli~~l~   31 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFI   31 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999987

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.07  E-value=0.0033  Score=53.75  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+++|+|+.||||||+.+.|+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            5678999999999999999998

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.07  E-value=0.0032  Score=51.31  Aligned_cols=20  Identities=35%  Similarity=0.630  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++++|+.|+|||||++.+.
T Consensus        14 ki~v~G~~~~GKSsli~~l~   33 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFV   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999999988

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.07  E-value=0.0034  Score=52.51  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|+.|+|||||++.+. +.
T Consensus        10 ki~v~G~~~~GKSsli~~l~-~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYA-DD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-TC
T ss_pred             EEEEECCCCCCHHHHHHHHh-cC
Confidence            58999999999999999998 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	320
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	7e-10
d1n0ua2	341	c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-	2e-09
d1kk1a3	195	c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su	2e-07
d1zunb3	222	c.37.1.8 (B:16-237) Sulfate adenylate transferase	5e-07
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	5e-06
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	0.004
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	1e-05
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	7e-04
d1jnya3	224	c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N	2e-05
d1f60a3	239	c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N	2e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-05
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	7e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-04
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	0.001
d2bv3a2	276	c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t	0.001
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.002
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.003
d1r5ba3	245	c.37.1.8 (A:215-459) Eukaryotic peptide chain rele	0.004

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 55.7 bits (133), Expect = 7e-10
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
           + + VVG+VD GK+TL+  +T           ++ +       E+         +     
Sbjct: 9   VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNI------GVCESCK 62

Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
                               +  + I+FID  GHE  + T + G      D  +L+
Sbjct: 63  KPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALM--DGAILV 116

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 203 IR-VAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG 259
           +R ++V+ +VD GKSTL   L    G +   +    +     K E E G T       L 
Sbjct: 17  VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLY 76

Query: 260 FDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTG 309
            +         +    +  +  + ++ +I  ID  GH  +       +  
Sbjct: 77  SE-------MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRV 119

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFD 261
           E+ + +VG+VD GK+TL   LT    D            H  E+  G T  +G       
Sbjct: 5   EVNIGMVGHVDHGKTTLTKALTGVWTD-----------THSEELRRGITIKIGFADAEIR 53

Query: 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGM 316
              N           +        + ++FID  GHE  + T + G +       +
Sbjct: 54  RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV 108

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
           +R    GNVD GKSTL+G L H   D+   +            +S ++ + G+D+     
Sbjct: 10  LRFLTCGNVDDGKSTLIGRLLH---DSKMIYEDH---LEAITRDSKKSGTTGDDVDLALL 63

Query: 263 VGNVVNKPEHGSLDWVKI--CERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
           V  +  + E G    V       + +     D  GHE+Y +    G      D  +++
Sbjct: 64  VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGA--STCDLAIIL 119

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 26/108 (24%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTH---GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG 259
           + V  +G+VD GK+TL   LT+    E  N        + +   E   G T +  +    
Sbjct: 4   VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH---- 59

Query: 260 FDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGM 307
                                 E + +  + +D  GH  Y+K  + G 
Sbjct: 60  -------------------VEYETAKRHYSHVDCPGHADYIKNMITGA 88

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 33  ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKLL 91
           A+  D ++L   V A  G +  T+EH+ LA  + VP + V + K+DM     L D +++ 
Sbjct: 88  AAQMDGAILV--VSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEME 145

Query: 92  VR-ILKSPGCRKVPVMNCLIS 111
           VR +L         V     S
Sbjct: 146 VRDLLNQYEFPGDEVPVIRGS 166

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
           + V  +G+VD GK+TL   +T    + G    ++         E  R  ++    + + +
Sbjct: 4   VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST 63

Query: 263 VGNVVN-KPEHGSLDWVKICERSAKVI 288
                      G  D+VK        +
Sbjct: 64  AARHYAHTDCPGHADYVKNMITGTAPL 90

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 33  ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLKLL 91
            +P D  +L   V AN G +  T+EHL LA  + V  V V V K D    + + + ++L 
Sbjct: 87  TAPLDGCIL--VVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELE 144

Query: 92  VR-ILKSPGCRKVPVMNCLIS----PTEEQFDLLQKKIKSLID 129
           +R +L   G +       + S      +   +L  K ++ L+D
Sbjct: 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLD 187

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVG---NDIL 258
            + + V+G+VD GKSTL+G L     D G    +      +   + G+ S       D L
Sbjct: 3   HLNLIVIGHVDHGKSTLVGRLLM---DRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRL 59

Query: 259 GFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMT 308
             +    V         +  K         T ID  GH  ++K  + G +
Sbjct: 60  KEERERGVTINLTFMRFETKKYF------FTIIDAPGHRDFVKNMITGAS 103

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
           I V V+G+VD+GKST  G L +     G    R      K   E G+ S     +L    
Sbjct: 7   INVVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLK 63

Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMT 308
                      +L      E     +T ID  GH  ++K  + G +
Sbjct: 64  AERERGITIDIALWK---FETPKYQVTVIDAPGHRDFIKNMITGTS 106

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
           I+VA+VG  + GKSTL   + + E                 E+        G   +  D+
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-----GRKYVFVDT 63

Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLA 294
            G                  R    I   D+ 
Sbjct: 64  AGLRRKSRVEPRTVEKYSNYRVVDSIEKADVV 95

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTH 224
           DF  I + + G++D GK+TL  VLT 
Sbjct: 2   DFKNINLGIFGHIDHGKTTLSKVLTE 27

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 9e-04
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
           E+ + +VG   +GK+T + V+  G+
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQ 26

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)

Query: 201 LEIR---VAVVGNVDAGKSTLLGVLTH 224
           ++IR   V+V+G+VD GK+TLL  +  
Sbjct: 1   MKIRSPIVSVLGHVDHGKTTLLDHIRG 27

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 203 IR-VAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG 259
           +R + +  ++DAGK+T    + +  G +                E E  R  ++   +  
Sbjct: 6   LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 65

Query: 260 FDSVGNVVNKPE-HGSLDWVKICERSAKV 287
                + +N  +  G +D+    ERS +V
Sbjct: 66  CFWKDHRINIIDAPGHVDFTIEVERSMRV 94

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTH 224
           +R+ +VG  + GKSTLL  L +
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLN 22

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGH 233
            + + G  ++GK++LL +LT   +      
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVS 34

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
           + +  +G+VDAGKSTL G +       G    R      +   E+G+ S   +  L   S
Sbjct: 25  VNIVFIGHVDAGKSTLGGNILF---LTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 81

Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGM 307
                 K       + +   R     + +D  GH+ Y+   + G 
Sbjct: 82  EEREKGKTVEVGRAYFETEHRR---FSLLDAPGHKGYVTNMINGA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.81
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.8
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.79
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.77
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.76
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.71
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.71
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.69
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.69
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.69
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.68
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.66
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.66
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.65
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.64
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.63
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.61
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.57
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.56
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.55
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.53
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.51
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.5
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.49
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.47
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.41
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.36
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.25
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.23
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.22
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.08
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.54
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.18
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.1
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.85
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.79
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.65
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.52
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.51
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.51
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.47
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.44
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.43
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.41
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.28
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.27
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.25
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.23
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.23
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.21
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.19
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.19
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.18
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.17
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.17
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.15
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.14
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.13
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.12
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.1
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.09
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.07
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.06
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.06
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.04
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.03
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.01
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.99
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.96
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.96
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.95
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.92
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.91
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.91
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.9
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.89
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.88
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.88
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.85
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.85
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.83
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.81
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.77
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.77
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.77
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.76
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.74
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.74
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.73
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.69
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.68
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.68
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.68
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.63
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.62
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.61
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.61
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.59
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.58
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.56
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.54
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.53
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.52
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.49
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.48
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.48
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.47
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.47
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.46
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.46
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.44
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.43
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.43
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.42
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.4
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.4
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.35
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.35
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.35
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.34
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.34
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.33
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.32
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.32
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.32
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.32
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.31
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.25
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.24
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.23
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.23
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.22
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.21
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.19
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.16
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.15
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.13
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.08
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.07
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.07
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.07
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.07
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.05
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.05
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.99
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.99
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.92
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.91
d1okkd2	207	GTPase domain of the signal recognition particle r	95.9
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.9
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.9
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.88
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.84
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.84
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.8
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.8
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.79
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.77
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.76
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.73
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.72
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.69
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.69
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.69
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.68
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.64
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.62
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.59
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.58
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.58
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.58
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.54
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.52
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.5
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.49
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.49
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.44
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.44
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.43
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.42
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.36
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.32
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.3
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.29
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.28
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.28
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.28
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.27
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.25
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.25
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.21
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.12
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.92
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.89
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.85
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.78
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.77
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.69
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.64
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.63
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.62
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.52
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.5
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.49
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.45
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.42
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.41
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.37
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.36
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.35
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.33
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.32
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.26
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.25
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.15
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.15
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.14
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.13
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.97
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.88
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.84
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.72
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.69
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.66
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.59
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.59
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.59
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.46
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.42
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.41
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.35
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.34
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.3
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.24
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.1
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.07
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.92
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.9
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.67
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.5
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.43
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.38
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.1
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.98
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.94
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.88
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.84
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.79
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.6
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.45
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.44
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.38
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.34
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	91.23
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.09
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.82
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	90.65
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	90.55
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.33
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.25
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.18
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.18
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.78
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	89.74
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.7
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	89.7
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	89.65
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.13
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	88.89
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.37
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.37
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	87.53
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	87.28
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.84
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.74
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.16
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	85.72
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.71
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.24
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.19
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.94
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	84.71
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.41
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.24
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.17
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	83.34
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.31
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.31
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	81.99
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.98
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	81.28
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	80.31

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.4e-20  Score=164.32  Aligned_cols=128  Identities=15%  Similarity=0.063  Sum_probs=88.3

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hhhhhcC
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KHEMESG  248 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~~~~~g  248 (320)
                      ++++++    ++.|+...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.    ..+..+|
T Consensus         7 I~v~nl----sk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~-Gl~~p~sG~I~i~g~~i~~~~~~~r~ig   81 (239)
T d1v43a3           7 VKLENL----TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA-GLEEPTEGRIYFGDRDVTYLPPKDRNIS   81 (239)
T ss_dssp             EEEEEE----EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred             EEEEEE----EEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCCCEEEEcceecccCCcccceEE
Confidence            556654    4555677888888886   9999999999999999999999 99999999999986541    2223355


Q ss_pred             cceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        249 RTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +++|.+.. +...++.+++.++.. ...+..+..++   +.++++.+|++++.+++|++|||++.
T Consensus        82 ~v~Q~~~l-~~~ltv~enl~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~LSGGq~  142 (239)
T d1v43a3          82 MVFQSYAV-WPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEELLNRYPAQLSGGQR  142 (239)
T ss_dssp             EEEC-------CCCHHHHHHTTCC--CCCHHHHHHH---HHHHHHHTTCGGGTTSCTTTCCSSCH
T ss_pred             EEeechhh-cccchHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHcCChhhhcCChhhCCHHHH
Confidence            55555432 222355666655443 34444444444   44555566778999999999999764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.6e-21  Score=166.25  Aligned_cols=126  Identities=17%  Similarity=0.017  Sum_probs=61.2

Q ss_pred             eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hhhhhcCcceeeeccc
Q psy15138        185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KHEMESGRTSSVGNDI  257 (320)
Q Consensus       185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~~~~~g~v~~~~~~~  257 (320)
                      +++.|+...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.    ..+..+|+++|.+.. 
T Consensus         6 v~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~-Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l-   83 (232)
T d2awna2           6 VTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA-GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL-   83 (232)
T ss_dssp             EEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-
T ss_pred             EEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHh-cCCCCCCCEEEECCEECCCCchhhceeeeecccccc-
Confidence            34456677788888886   9999999999999999999999 99999999999986552    122234555554422 


Q ss_pred             cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEE
Q psy15138        258 LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFG  315 (320)
Q Consensus       258 ~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~  315 (320)
                      +...++.+++.++.. ......+..   +++.++++.+++.++.+++|++|||++...+
T Consensus        84 ~~~~tv~eni~~~~~~~~~~~~~~~---~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRv  139 (232)
T d2awna2          84 YPHLSVAENMSFGLKLAGAKKEVIN---QRVNQVAEVLQLAHLLDRKPKALSGGQRQRV  139 (232)
T ss_dssp             ---------------------CHHH---HHHHHHHHHC---------------------
T ss_pred             ccchhHHHHHHHHHHHcCCCHHHHH---HHHHHHHHhCCChhhhhCChhhCCHHHHHHH
Confidence            222456666665543 233333333   3445555666778899999999999876544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.80  E-value=3.7e-21  Score=167.32  Aligned_cols=134  Identities=13%  Similarity=0.092  Sum_probs=90.6

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H-----  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~-----  243 (320)
                      ++++++++.|........++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    .     
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~-gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhcc-CCCCCCcceeEECCEEcCcCChhhcchh
Confidence            56777776665433344578888876   9999999999999999999999 999999999999865411    1     


Q ss_pred             -hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCC
Q psy15138        244 -EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHV  311 (320)
Q Consensus       244 -~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~  311 (320)
                       ...+|+++|.+..+. ..++.+++..+.. .........+..+++.+.++++++.+ +.+++|++|||++
T Consensus        81 r~~~ig~v~Q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGq  150 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIP-LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ  150 (230)
T ss_dssp             HHHHEEEECTTCCCCT-TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred             hcceEEEEecchhhCc-CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHH
Confidence             112455555443222 2345555554332 22222233445567777888888865 5799999999964

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1e-20  Score=165.30  Aligned_cols=132  Identities=15%  Similarity=0.073  Sum_probs=89.8

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hh-----
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KH-----  243 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~-----  243 (320)
                      ++++++++.|..+.....++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.    ..     
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~-Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHT-TSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHc-CCccccCCceEEcCeEeeeCChhhhhhh
Confidence            56677766665443344678888886   9999999999999999999999 99999999999986541    11     


Q ss_pred             hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      +..+|+++|.+.. +...++.+++.++.. ...+..+..++   +.++++.+|+.++.+++|++|||++.
T Consensus        81 rr~ig~VfQ~~~l-~~~~tv~eni~~~l~~~~~~~~~~~~~---v~~~L~~vgL~~~~~~~~~~LSGG~~  146 (240)
T d3dhwc1          81 RRQIGMIFQHFNL-LSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSYPSNLSGGQK  146 (240)
T ss_dssp             HHHEEECCSSCCC-CTTSBHHHHHHHHHHTTTCCTTHHHHH---HHHHHHHHSTTTTTSSCBSCCCHHHH
T ss_pred             hcccccccccccc-CCCccHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHcCCchhhhCChhhCCHHHH
Confidence            1235555555432 222355565555432 33444444444   44555566678889999999999653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.77  E-value=4.2e-20  Score=161.41  Aligned_cols=129  Identities=15%  Similarity=0.091  Sum_probs=88.8

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hh----h
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KH----E  244 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~----~  244 (320)
                      .+++++++    +.|+...++++++|.   |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.   ..    .
T Consensus         3 ~i~v~nl~----k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~-gl~~p~sG~I~~~g~~i~~~~~~~~~~   77 (240)
T d1g2912           3 GVRLVDVW----KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA-GLEEPSRGQIYIGDKLVADPEKGIFVP   77 (240)
T ss_dssp             EEEEEEEE----EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-TSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred             cEEEEeEE----EEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHh-cCCCCCCCEEEECCEEecccchhhhcc
Confidence            45666554    445667788888886   9999999999999999999999 99999999999986441   11    1


Q ss_pred             hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .+...++.++|+...|  .++.+++..+.. ...+..+..+++.+   +++.+|+.++.+++|++|||++
T Consensus        78 ~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~---~l~~~~l~~~~~~~p~~LSGGq  144 (240)
T d1g2912          78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE---VAELLGLTELLNRKPRELSGGQ  144 (240)
T ss_dssp             GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHH---HHHHHTCGGGTTCCGGGSCHHH
T ss_pred             cccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHH---HHHHcCChhHhcCChhhCCHHH
Confidence            1123345555554333  355666655433 34455554444444   4555566889999999999965

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=8.5e-20  Score=159.43  Aligned_cols=131  Identities=11%  Similarity=0.043  Sum_probs=90.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hhh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HEM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~~  245 (320)
                      .++++++++.|..  +...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..      ...
T Consensus         3 ~i~v~nlsk~y~~--g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~-gl~~p~~G~I~~~g~~i~~~~~~~~~~   79 (242)
T d1oxxk2           3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA-GLDVPSTGELYFDDRLVASNGKLIVPP   79 (242)
T ss_dssp             CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHH-TSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred             EEEEEeEEEEECC--CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHH-cCcCCCCceEEECCEEeecCchhhcch
Confidence            3556666555432  235677787776   9999999999999999999999 999999999999865411      111


Q ss_pred             hcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        246 ESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .+..++.+||++..|  .++.+++.++.. ...+..+.++   ++.++++.+|+.++.+++|++|||++
T Consensus        80 ~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~---~v~~~l~~~gL~~~~~~~p~~LSGGq  145 (242)
T d1oxxk2          80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK---RVEEVAKILDIHHVLNHFPRELSGAQ  145 (242)
T ss_dssp             GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH---HHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred             hhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHH---HHHHHHhhcChHhhhhCChhhCCHHH
Confidence            223456666665444  356677766543 3444444444   44555666777899999999999964

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.71  E-value=2.1e-18  Score=150.25  Aligned_cols=105  Identities=17%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hhhhhcCcceeeeccccCCccccceeecCCCCCCCH
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDW  277 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~  277 (320)
                      +++++|+||||||||||+|+|+ |+++|++|+|.+++.+.    ..+..+|+++|.+.. +...++.+++.++.. ....
T Consensus        24 ~e~~~liGpnGaGKSTll~~i~-Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l-~~~ltV~enl~~~l~-~~~~  100 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVFLELIA-GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL-FPHLSVYRNIAYGLR-NVER  100 (240)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC-CTTSCHHHHHHTTCT-TSCH
T ss_pred             CEEEEEECCCCChHHHHHHHHH-cCCCCCceEEEECCEECCcCCHHHcCceeeccchhh-cccchhhHhhhhhhc-ccCH
Confidence            5789999999999999999999 99999999999986552    122235555555432 222366777776543 3333


Q ss_pred             HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138        278 VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       278 ~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~  312 (320)
                      .+.   .+++.++++.+|+.++.+++|++|||++.
T Consensus       101 ~~~---~~~v~~~l~~~gl~~~~~~~~~~LSGG~k  132 (240)
T d2onka1         101 VER---DRRVREMAEKLGIAHLLDRKPARLSGGER  132 (240)
T ss_dssp             HHH---HHHHHHHHHTTTCTTTTTCCGGGSCHHHH
T ss_pred             HHH---HHHHHHHHHhcCcHhhhhCChhhCCHHHH
Confidence            333   34456667777889999999999999653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.71  E-value=3.2e-19  Score=154.61  Aligned_cols=123  Identities=11%  Similarity=0.023  Sum_probs=82.0

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hhhhhcC
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KHEMESG  248 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~~~~~g  248 (320)
                      ++++++++.|    +. .++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.    ..+..+|
T Consensus         2 i~v~nlsk~y----~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~-Gl~~p~sG~I~~~G~~i~~~~~~~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKW----KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIA-GFHVPDSGRILLDGKDVTDLSPEKHDIA   75 (229)
T ss_dssp             EEEEEEEEEC----SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHH-TSSCCSEEEEEETTEECTTSCHHHHTCE
T ss_pred             EEEEEEEEEe----CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh-cCcCCCCCEEEEccEeccccchhHhcce
Confidence            4556555444    32 357777775   9999999999999999999999 99999999999986552    1222345


Q ss_pred             cceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +++|.+.. +...++.+++.++.. .....   .   +++.+.++.+++.++.+++|++|||++
T Consensus        76 ~v~Q~~~l-~~~~tV~enl~~~~~~~~~~~---~---~~~~~~l~~~~l~~~~~~~~~~LSGG~  132 (229)
T d3d31a2          76 FVYQNYSL-FPHMNVKKNLEFGMRMKKIKD---P---KRVLDTARDLKIEHLLDRNPLTLSGGE  132 (229)
T ss_dssp             EECTTCCC-CTTSCHHHHHHHHHHHHCCCC---H---HHHHHHHHHTTCTTTTTSCGGGSCHHH
T ss_pred             eecccccc-CccccHHHHHHHHHhhccccH---H---HHHHHHHHHhcchhhHhCChhhCCHHH
Confidence            55544322 222356666655432 11111   1   234445556677889999999999964

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=8.6e-18  Score=148.46  Aligned_cols=132  Identities=17%  Similarity=0.112  Sum_probs=89.3

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hhh--
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KHE--  244 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~~--  244 (320)
                      .++++++++    +.|+..+++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+.    .++  
T Consensus         3 ~iL~v~nls----k~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~-Gl~~p~~G~I~~~g~~i~~~~~~~~~   77 (254)
T d1g6ha_           3 EILRTENIV----KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT-GFLKADEGRVYFENKDITNKEPAELY   77 (254)
T ss_dssp             EEEEEEEEE----EEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEE----EEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHH-CCCcCCCcEEEECCEeccchhHHHHH
Confidence            467777654    455677889999887   9999999999999999999999 99999999999986542    111  


Q ss_pred             -hhcCcceeeeccccCCccccceeecCCCC-CCC----------HHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        245 -MESGRTSSVGNDILGFDSVGNVVNKPEHG-SLD----------WVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       245 -~~~g~v~~~~~~~~~~~~~~~~v~~~~~~-~~~----------~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                       ..+++++|.++.+..+ ++.+++..+... ...          .....+..+++.++++.+++.+..++++++|||++
T Consensus        78 ~~gi~~v~Q~~~~~~~l-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  155 (254)
T d1g6ha_          78 HYGIVRTFQTPQPLKEM-TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ  155 (254)
T ss_dssp             HHTEEECCCCCGGGGGS-BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred             HhcCCccCCccccCCCC-eeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHH
Confidence             1245555555433223 444554443211 000          00112234555666777777888999999999964

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.69  E-value=6.1e-18  Score=148.13  Aligned_cols=130  Identities=18%  Similarity=0.129  Sum_probs=86.0

Q ss_pred             eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhh-
Q psy15138        174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEM-  245 (320)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~-  245 (320)
                      .++++++++    +.|+...++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+..    +.. 
T Consensus         5 ~~Lev~~l~----k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~-Gl~~p~~G~I~~~G~~i~~~~~~~~~   79 (240)
T d1ji0a_           5 IVLEVQSLH----VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFNGQDITNKPAHVIN   79 (240)
T ss_dssp             EEEEEEEEE----EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred             eEEEEeeEE----EEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEecccccccccHHHHH
Confidence            356677554    455677888888887   9999999999999999999999 999999999999866521    111 


Q ss_pred             hcCcceeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        246 ESGRTSSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      +.| +..++|....|  .++.+++..............+..++++..+  .++.++.++++++|||++
T Consensus        80 r~g-i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~LSGG~  144 (240)
T d1ji0a_          80 RMG-IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF--PRLKERLKQLGGTLSGGE  144 (240)
T ss_dssp             HTT-EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC--HHHHTTTTSBSSSSCHHH
T ss_pred             Hhc-ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--hChHHHHhCchhhCCHHH
Confidence            222 33444443223  3555555544433333333333344444332  145778899999999954

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.69  E-value=2.9e-18  Score=151.66  Aligned_cols=127  Identities=13%  Similarity=0.042  Sum_probs=84.2

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-----------
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-----------  241 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-----------  241 (320)
                      +++++++    +.|+..+++++++|.   ||+++|+||||||||||+++|+ |+++|++|+|.+++.+.           
T Consensus         3 Lev~nl~----k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~-Gl~~p~~G~I~~~G~~i~~~~~~~~~~~   77 (258)
T d1b0ua_           3 LHVIDLH----KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQLK   77 (258)
T ss_dssp             EEEEEEE----EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred             EEEEEEE----EEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHH-cCccCCCCCEEECCEEeccCCccchhcc
Confidence            4555444    455667888888886   9999999999999999999999 99999999999875431           


Q ss_pred             --------hhhhhcCcceeeeccccCCccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCC
Q psy15138        242 --------KHEMESGRTSSVGNDILGFDSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGH  310 (320)
Q Consensus       242 --------~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~  310 (320)
                              .....+|+++|.+.. +...++.+++..+.  .......+..+   ++.++++.+++.+ ..+++|++|||+
T Consensus        78 ~~~~~~~~~~r~~ig~vfQ~~~l-~~~~tv~env~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~p~~LSGG  153 (258)
T d1b0ua_          78 VADKNQLRLLRTRLTMVFQHFNL-WSHMTVLENVMEAPIQVLGLSKHDARE---RALKYLAKVGIDERAQGKYPVHLSGG  153 (258)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCC-CTTSCHHHHHHHHHHHTTCCCHHHHHH---HHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred             cccHhHHHHHhcceEEEEechhh-ccchhcchhhhhhHHHhcCCCHHHHHH---HHHHHHHHcCCchhhhccCcccccHH
Confidence                    011234555555432 22234455554432  23334444333   4445555666665 457889999996


Q ss_pred             C
Q psy15138        311 V  311 (320)
Q Consensus       311 ~  311 (320)
                      +
T Consensus       154 ~  154 (258)
T d1b0ua_         154 Q  154 (258)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=4.2e-18  Score=148.94  Aligned_cols=124  Identities=13%  Similarity=0.039  Sum_probs=84.2

Q ss_pred             CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeecccc
Q psy15138        184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDIL  258 (320)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~  258 (320)
                      ++.+.|+.++++++++|.   |+++||+||||||||||+++|+ |+++|++|+|.+++.+...  ......+++++|...
T Consensus         7 nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~-G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~   85 (238)
T d1vpla_           7 DLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS-TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG   85 (238)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC
T ss_pred             eEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCCEEEECcEecccChHHHHhhEeEeeeccc
Confidence            445667888899999987   9999999999999999999999 9999999999998654211  112344566666543


Q ss_pred             CCc--cccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        259 GFD--SVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       259 ~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      .|+  +..+++.+.. .......+..+..+   ++++.+++.+..++++..|||++
T Consensus        86 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~lSgG~  138 (238)
T d1vpla_          86 AYRNMQGIEYLRFVAGFYASSSSEIEEMVE---RATEIAGLGEKIKDRVSTYSKGM  138 (238)
T ss_dssp             CCTTSBHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHCCGGGGGSBGGGCCHHH
T ss_pred             cCCCccHHHHHHHHHHhcCCCHHHHHHHHH---HHHHhCCCHHHHhhhhhhCCHHH
Confidence            332  3333332211 12223333333333   45555666889999999999964

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.66  E-value=6.7e-17  Score=137.33  Aligned_cols=88  Identities=27%  Similarity=0.264  Sum_probs=77.0

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCCC-hhHHHH
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCP-PNVLQD   86 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~-~~~le~   86 (320)
                      ++...+.++|+|||++|+  |+.|++.+|.++|  ||+|++|+++||++|+.+|..+++ |++|++||+|+.+ .++++.
T Consensus        63 ~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~all--VVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~  140 (196)
T d1d2ea3          63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCIL--VVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVEL  140 (196)
T ss_dssp             CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHH
T ss_pred             eceeeEEeecCcchHHHHHHHHHHHhhcCeEEE--EEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHH
Confidence            345679999999999999  9999999999999  999999999999999999999999 5678899999974 567787


Q ss_pred             HHHHHHHhhcCCCc
Q psy15138         87 TLKLLVRILKSPGC  100 (320)
Q Consensus        87 ~l~~~~~~l~~~~~  100 (320)
                      +.++++..+...++
T Consensus       141 i~~~i~~~l~~~~~  154 (196)
T d1d2ea3         141 VELEIRELLTEFGY  154 (196)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCC
Confidence            88888888765444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.66  E-value=2.9e-17  Score=142.29  Aligned_cols=90  Identities=21%  Similarity=0.256  Sum_probs=78.4

Q ss_pred             CCCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC--hhHH
Q psy15138         10 CTAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP--PNVL   84 (320)
Q Consensus        10 ~~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~~~l   84 (320)
                      .+....+.|||+|||++|+  |++|++.+|.++|  ||+|.+|+++||++|+.+|..++++ +++++||+|+++  .+..
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ail--Vvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~  162 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAII--LVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVF  162 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEE--EeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceeh
Confidence            3455679999999999999  9999999999999  9999999999999999999999996 778889999964  6677


Q ss_pred             HHHHHHHHHhhcCCCcc
Q psy15138         85 QDTLKLLVRILKSPGCR  101 (320)
Q Consensus        85 e~~l~~~~~~l~~~~~~  101 (320)
                      ++..+++..++...+++
T Consensus       163 ~~~~~~l~~~~~~~~~~  179 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFK  179 (222)
T ss_dssp             HHHHHHHHHHHHTTTCC
T ss_pred             hhhHHHHhhhhHhhccC
Confidence            77778888877665443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.65  E-value=3.1e-17  Score=143.75  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=67.0

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g  248 (320)
                      +++++++++.|...   ..++++++|.   |+++||+||||||||||+++|+ |+++|++|+|.+++.+..   ....+.
T Consensus         1 mle~knvsf~Y~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~-gl~~p~~G~I~i~g~~i~~~~~~~~r~   76 (242)
T d1mv5a_           1 MLSARHVDFAYDDS---EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPTAGEITIDGQPIDNISLENWRS   76 (242)
T ss_dssp             CEEEEEEEECSSSS---SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHT-TSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred             CEEEEEEEEECCCC---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-HhhCCCCCEEEECCEEeccccHHHHHh
Confidence            36788888888543   3456666665   9999999999999999999999 999999999999865421   122234


Q ss_pred             cceeeeccccCC-ccccceeecCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEH  272 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~  272 (320)
                      .++.++|+...| .++.+++..+..
T Consensus        77 ~i~~v~Q~~~lf~~ti~eNi~~~~~  101 (242)
T d1mv5a_          77 QIGFVSQDSAIMAGTIRENLTYGLE  101 (242)
T ss_dssp             TCCEECCSSCCCCEEHHHHTTSCTT
T ss_pred             heEEEccccccCCcchhhheecccc
Confidence            556666665544 345566555433

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=5.8e-17  Score=138.63  Aligned_cols=88  Identities=27%  Similarity=0.303  Sum_probs=76.3

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCC-ChhHHHH
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMC-PPNVLQD   86 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-~~~~le~   86 (320)
                      +.+..+.|||+|||++|+  |+.|++.+|.++|  ||+|++|+++||++|+.+|..+++| +++++||+|+. +.+.+++
T Consensus        64 ~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avl--Vvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~  141 (204)
T d2c78a3          64 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAIL--VVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDL  141 (204)
T ss_dssp             CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEE--EEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHH
T ss_pred             eCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHH
Confidence            456779999999999999  9999999999999  9999999999999999999999997 56779999986 4556788


Q ss_pred             HHHHHHHhhcCCCc
Q psy15138         87 TLKLLVRILKSPGC  100 (320)
Q Consensus        87 ~l~~~~~~l~~~~~  100 (320)
                      +.++++..+....+
T Consensus       142 ~~~~i~~~l~~~~~  155 (204)
T d2c78a3         142 VEMEVRDLLNQYEF  155 (204)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcCC
Confidence            88888887664333

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.9e-17  Score=143.03  Aligned_cols=88  Identities=27%  Similarity=0.337  Sum_probs=75.7

Q ss_pred             CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCCC-cEEEEeCCCCC-
Q psy15138         11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSVP-VFVVVTKIDMC-   79 (320)
Q Consensus        11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-   79 (320)
                      |+...+.|+|+|||++|+  |++|++.+|.++|  ||+|.+|+       .+||++|+.+|+.+++| +++++||||++ 
T Consensus        81 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ail--vvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          81 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAIL--IIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEE--EEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT
T ss_pred             cCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEE--EEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence            456779999999999999  9999999999999  99999885       47999999999999997 67789999985 


Q ss_pred             -ChhHHHHHHHHHHHhhcCCCc
Q psy15138         80 -PPNVLQDTLKLLVRILKSPGC  100 (320)
Q Consensus        80 -~~~~le~~l~~~~~~l~~~~~  100 (320)
                       +.+.+++..+++..++...++
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~  180 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGY  180 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHhcCC
Confidence             566778888888887764333

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-17  Score=144.92  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=87.5

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|... ....++++++|.   |+++||+||||||||||+++|+ |+++|++|+|.+++.+.   .....+.
T Consensus        11 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~-gl~~p~~G~I~i~g~~i~~~~~~~~r~   88 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ-NLYQPTGGQLLLDGKPLPQYEHRYLHR   88 (251)
T ss_dssp             CEEEEEEEECCTTS-TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             eEEEEEEEEECCCC-CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHh-cccCCCcCEEEECCEecchhhhHHHHH
Confidence            48888888887432 223466777765   9999999999999999999999 99999999999986542   1122223


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~~  312 (320)
                      .++.++|+...| .++.+++.++...........+.  .....+++...  |+....+..+..|||++.
T Consensus        89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqk  157 (251)
T d1jj7a_          89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQR  157 (251)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHH
T ss_pred             HhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHc
Confidence            445555555444 46667776654433333222221  11122233222  455667788899999653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=3.1e-16  Score=133.96  Aligned_cols=110  Identities=21%  Similarity=0.221  Sum_probs=90.3

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      .+.++|+|||++|+  |+.|+..+|.+++  ||+|.+|+ .+||+||+.++..+++ |.+|++||+|+++..+.+.....
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ail--vVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAIL--VVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEE--EEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccc--cccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHH
Confidence            48899999999999  9999999999999  99999997 8899999999999999 66788999999998888888788


Q ss_pred             HHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         91 LVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        91 ~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      +...+.......++.- -.+.-+.+..++|.+.+.+.
T Consensus       165 ~~~~l~~~~~~~~p~i-piSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         165 IKQFTKGTWAENVPII-PVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHTTSTTTTCCEE-ECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHhccccCCCCeEE-EEeCCCCCChHHHHHHHHhh
Confidence            8887776555554431 13345666677777776654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=5e-17  Score=142.19  Aligned_cols=133  Identities=15%  Similarity=0.121  Sum_probs=83.2

Q ss_pred             eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138        176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR  249 (320)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~  249 (320)
                      ++++++++.|...  ...++++++|.   |+++||+||||||||||+++|+ |+++|++|+|.+++.+.   .....+..
T Consensus         2 I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~-gl~~p~~G~I~i~g~~i~~~~~~~lr~~   78 (241)
T d2pmka1           2 ITFRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPENGQVLIDGHDLALADPNWLRRQ   78 (241)
T ss_dssp             EEEEEEEEESSTT--SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             eEEEEEEEEeCCC--CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hcCCCCCCEEEECCEEecccchhhhhce
Confidence            4677777666422  23456777775   9999999999999999999999 99999999999986542   11222334


Q ss_pred             ceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhcc--cCCccccccccccccCCCC
Q psy15138        250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDL--AGHERYLKTTVFGMTGHVP  312 (320)
Q Consensus       250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l--~gl~~~~~~~~~~LSG~~~  312 (320)
                      ++.++|+...| .++.+++.++... .......+.  ...+.+.+..  .++.......+..|||++.
T Consensus        79 i~~v~Q~~~lf~~Ti~eNi~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~  145 (241)
T d2pmka1          79 VGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR  145 (241)
T ss_dssp             EEEECSSCCCTTSBHHHHHCTTSTT-CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHH
T ss_pred             EEEEecccccCCccccccccccCcc-ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHH
Confidence            55556655544 4566666554322 233222221  1222233332  2334456677889999653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.60  E-value=1e-16  Score=141.35  Aligned_cols=134  Identities=20%  Similarity=0.215  Sum_probs=86.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|...  ...++++++|.   |+++||+||||||||||+++|+ |+++|++|+|.+++.+.   .....+.
T Consensus        13 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~-gl~~p~~G~I~i~g~~i~~~~~~~~r~   89 (253)
T d3b60a1          13 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLASLRN   89 (253)
T ss_dssp             CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT-TTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred             EEEEEEEEEEeCCC--CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHh-cccCCCccEEEECCcccchhhhhhhhh
Confidence            47888888877532  13456666665   9999999999999999999999 99999999999986542   2222344


Q ss_pred             cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHV  311 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~  311 (320)
                      .++.++|+...| .+..+++..+........++.+.  ...+.++++..  |+.......+..|||++
T Consensus        90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGq  157 (253)
T d3b60a1          90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ  157 (253)
T ss_dssp             TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred             eEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHH
Confidence            566677766554 34445554443333343333221  11122333322  45556667788999965

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=4.7e-15  Score=127.57  Aligned_cols=152  Identities=22%  Similarity=0.260  Sum_probs=91.5

Q ss_pred             CCCCccchhhhccceecCCCCch--hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCcccc
Q psy15138         31 PEASPADHSMLQSKVGANAGIVG--MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNC  108 (320)
Q Consensus        31 ~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~  108 (320)
                      +.+++.|++++  |+++++|...  ...++|..|...++|++||+||+||.+++.++.+.......      ... +.+.
T Consensus         6 P~vANiD~vli--V~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~------~~~-~~v~   76 (225)
T d1u0la2           6 PHVANVDQVIL--VVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIY------SGL-YPIV   76 (225)
T ss_dssp             TTEESCCEEEE--EECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHH------TTT-SCEE
T ss_pred             CCcccCCEEEE--EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhccc------ccc-eeEE
Confidence            45899999999  9999876543  45568999999999999999999999887765543332221      111 1121


Q ss_pred             -ccCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeee
Q psy15138        109 -LISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTG  187 (320)
Q Consensus       109 -~~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (320)
                       ....+.+.+++++..+                                                               
T Consensus        77 ~vSa~~~~g~~~L~~~l---------------------------------------------------------------   93 (225)
T d1u0la2          77 KTSAKTGMGIEELKEYL---------------------------------------------------------------   93 (225)
T ss_dssp             ECCTTTCTTHHHHHHHH---------------------------------------------------------------
T ss_pred             EeccccchhHhhHHHHh---------------------------------------------------------------
Confidence             2223333444333321                                                               


Q ss_pred             eecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCcccccee
Q psy15138        188 QYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVV  267 (320)
Q Consensus       188 ~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v  267 (320)
                                   .|...+++|+||+|||||++.|. +......|+++....       .|+......+.+.++..+.++
T Consensus        94 -------------~~kt~~~~G~SGVGKSTLiN~L~-~~~~~~T~~vs~~~~-------rGrHTTt~~~l~~l~~gg~ii  152 (225)
T d1u0la2          94 -------------KGKISTMAGLSGVGKSSLLNAIN-PGLKLRVSEVSEKLQ-------RGRHTTTTAQLLKFDFGGYVV  152 (225)
T ss_dssp             -------------SSSEEEEECSTTSSHHHHHHHHS-TTCCCC--------------------CCCSCCEEECTTSCEEE
T ss_pred             -------------cCCeEEEECCCCCCHHHHHHhhc-chhhhhccCcccccC-------CCCccccceeEEEECCCcEEE
Confidence                         13447999999999999999999 887777788775433       333344444444444455666


Q ss_pred             ecCCCCCC
Q psy15138        268 NKPEHGSL  275 (320)
Q Consensus       268 ~~~~~~~~  275 (320)
                      +.+....+
T Consensus       153 DTPG~r~~  160 (225)
T d1u0la2         153 DTPGFANL  160 (225)
T ss_dssp             SSCSSTTC
T ss_pred             eCCccccc
Confidence            66655433

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.56  E-value=1.3e-15  Score=131.84  Aligned_cols=82  Identities=23%  Similarity=0.347  Sum_probs=68.5

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCC-CcEEEEeCCCCCC--
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSV-PVFVVVTKIDMCP--   80 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~--   80 (320)
                      ...+.|||+|||++|.  |++|++.+|.++|  ||+|.+|+       ++||+||+.+++.+++ +.++++||+|+..  
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~all--VVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAIL--VVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEE--EEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEE--EEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcc
Confidence            3568999999999999  9999999999999  99999995       6799999999999999 5788899999874  


Q ss_pred             --hhHHHHHHHHHHHhhc
Q psy15138         81 --PNVLQDTLKLLVRILK   96 (320)
Q Consensus        81 --~~~le~~l~~~~~~l~   96 (320)
                        ...++.....+..++.
T Consensus       158 ~~~~~~~~v~~~i~~~~~  175 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMR  175 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHH
Confidence              4445555555555444

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.55  E-value=2.6e-16  Score=134.04  Aligned_cols=76  Identities=21%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS  251 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~  251 (320)
                      .+++++++++|.     ++++++++|.   |++++|+||||||||||+++|+ |+++|++|+|.+++.+...  ..+.++
T Consensus         2 ~lev~~ls~~y~-----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~-gl~~p~~G~I~~~g~~i~~--~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS-TYLKPLKGEIIYNGVPITK--VKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESS-----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEEGGG--GGGGEE
T ss_pred             eEEEEEEEEEeC-----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHh-cccccCCCEEEECCEehhH--hcCcEE
Confidence            456777766552     3467777775   9999999999999999999999 9999999999998654321  234566


Q ss_pred             eeecccc
Q psy15138        252 SVGNDIL  258 (320)
Q Consensus       252 ~~~~~~~  258 (320)
                      +.++...
T Consensus        74 ~~~~~~~   80 (200)
T d1sgwa_          74 FLPEEII   80 (200)
T ss_dssp             EECSSCC
T ss_pred             EEeeccc
Confidence            6666544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.53  E-value=6.8e-15  Score=124.36  Aligned_cols=109  Identities=19%  Similarity=0.261  Sum_probs=89.0

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHHHH
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      +.|+|+|||++|.  |..|.+.+|.+++  +|++.+|+ .++|+||+.+++.+++| +++++||+|+.+..+..+....+
T Consensus        80 ~~~iDtPGh~~f~~~~~~~~~~~d~~il--vvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~  157 (195)
T d1kk1a3          80 VSFIDAPGHEALMTTMLAGASLMDGAIL--VIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQI  157 (195)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEE--EEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EeeeccchhhhhhHHhhccccccccccc--ccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHH
Confidence            8999999999999  9999999999999  99999997 67899999999999996 67789999999988887777888


Q ss_pred             HHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         92 VRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        92 ~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      .+.+.......++.-. .+..+.++.++|.+.+.++
T Consensus       158 ~~~~~~~~~~~~~iIp-iSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         158 KEFIEGTVAENAPIIP-ISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHHTTSTTTTCCEEE-CBTTTTBSHHHHHHHHHHH
T ss_pred             HHHhccccCCCCeEEE-EECCCCCCHHHHHHHHHHH
Confidence            8887765444444211 3446677788877766553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=1.3e-15  Score=131.55  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             CCCCccchhhhccceecCCCCc--hhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHh
Q psy15138         31 PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRI   94 (320)
Q Consensus        31 ~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~   94 (320)
                      +.++++|++++  |+++.+|..  ....++|.+|...+++++||+||+||.+.+..++.++.+...
T Consensus         6 P~vANiD~~~i--V~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~   69 (231)
T d1t9ha2           6 PPICNVDQAVL--VFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAED   69 (231)
T ss_dssp             TTEECCCEEEE--EEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             CCccccCEEEE--EEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHH
Confidence            35789999999  999876544  355579999999999999999999998776666655555554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.50  E-value=2.9e-15  Score=131.81  Aligned_cols=94  Identities=17%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG  248 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g  248 (320)
                      .++++++++.|...  ...++++++|.   |+++||+||||||||||+++|+ |+++|++|+|.+++.+.   .....+.
T Consensus        16 ~I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~-gl~~p~~G~I~i~g~~i~~~~~~~lr~   92 (255)
T d2hyda1          16 RIDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRN   92 (255)
T ss_dssp             CEEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT-TSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             EEEEEEEEEEeCCC--CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHH-hcCCccccccccCCEEcccCCHHHhhh
Confidence            47888888877543  13456666664   9999999999999999999999 99999999999986542   1122234


Q ss_pred             cceeeeccccCC-ccccceeecCC
Q psy15138        249 RTSSVGNDILGF-DSVGNVVNKPE  271 (320)
Q Consensus       249 ~v~~~~~~~~~~-~~~~~~v~~~~  271 (320)
                      .+++++|+...| .++.+++..+.
T Consensus        93 ~i~~v~Q~~~lf~~Ti~eNi~~g~  116 (255)
T d2hyda1          93 QIGLVQQDNILFSDTVKENILLGR  116 (255)
T ss_dssp             TEEEECSSCCCCSSBHHHHHGGGC
T ss_pred             eeeeeeccccCCCCCHHHHHhccC
Confidence            556666665554 46667776543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=5.3e-15  Score=129.70  Aligned_cols=82  Identities=24%  Similarity=0.257  Sum_probs=59.2

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-------hHHHHHHHHHHcCCC-cEEEEeCCCCCCh
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-------MTKEHLGLALALSVP-VFVVVTKIDMCPP   81 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-------~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~   81 (320)
                      ....+.|+|+|||++|+  |+.|++.+|.+++  ||+|++|+++       ||+||+.++..+++| +++++||+|+...
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ail--VVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVL--VISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEE--EEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceee--EEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCcc
Confidence            44568999999999999  9999999999999  9999999754       999999999999996 6688899998654


Q ss_pred             h----HHHHHHHHHHHhh
Q psy15138         82 N----VLQDTLKLLVRIL   95 (320)
Q Consensus        82 ~----~le~~l~~~~~~l   95 (320)
                      +    .++++++++...+
T Consensus       178 ~~~e~~~~ei~~~l~~~l  195 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFL  195 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHH
Confidence            4    4555555555443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1e-14  Score=126.73  Aligned_cols=119  Identities=15%  Similarity=0.130  Sum_probs=72.3

Q ss_pred             eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hh
Q psy15138        175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EM  245 (320)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~  245 (320)
                      +++++++++.+        .+++++|.   |++++|+||||||||||+++|+ |+. |++|+|.+++.+...      ..
T Consensus         3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~-Gl~-~~~G~I~~~g~~i~~~~~~~~~~   72 (231)
T d1l7vc_           3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMT-SGKGSIQFAGQPLEAWSATKLAL   72 (231)
T ss_dssp             EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHH-TSC-CCSSEEEESSSBGGGSCHHHHHH
T ss_pred             EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCC-CCceEEEECCEECCcCCHHHHHh
Confidence            46677765543        46666765   9999999999999999999999 975 689999998654211      11


Q ss_pred             hcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138        246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV  311 (320)
Q Consensus       246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~  311 (320)
                      ..+++++.....+ ..+..+.+.......    ...   +.+.++++.+++.++.++.++.|||++
T Consensus        73 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~~---~~~~~~~~~~~l~~~~~~~~~~LSgG~  130 (231)
T d1l7vc_          73 HRAYLSQQQTPPF-ATPVWHYLTLHQHDK----TRT---ELLNDVAGALALDDKLGRSTNQLSGGE  130 (231)
T ss_dssp             HEEEECSCCCCCS-SCBHHHHHHHHCSCT----TCH---HHHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred             hceeeeccccCCc-cccHHHHhhhccchh----hHH---HHHHHHHHhcCCHhHhCcChhhcCHHH
Confidence            2333333221111 112222222211111    111   223344445667888999999999975

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.7e-14  Score=128.76  Aligned_cols=69  Identities=17%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC-ccccce
Q psy15138        191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF-DSVGNV  266 (320)
Q Consensus       191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~  266 (320)
                      ..+++++++|.   |+++||+||||||||||+++|+ |+++|++|.|.+++          +++.++|....| .++.++
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~-Gl~~p~~G~I~~~g----------~i~~v~Q~~~l~~~tv~en  116 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLIL-GELEASEGIIKHSG----------RVSFCSQFSWIMPGTIKEN  116 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH-TSSCCSEEEEECCS----------CEEEECSSCCCCSEEHHHH
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHh-CCCcCCCcEEEECC----------EEEEEeccccccCceeecc
Confidence            34567777765   9999999999999999999999 99999999998753          455556655444 345555


Q ss_pred             eecC
Q psy15138        267 VNKP  270 (320)
Q Consensus       267 v~~~  270 (320)
                      +.++
T Consensus       117 i~~~  120 (281)
T d1r0wa_         117 IIFG  120 (281)
T ss_dssp             HTTT
T ss_pred             cccc
Confidence            5543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.36  E-value=2e-13  Score=118.11  Aligned_cols=68  Identities=25%  Similarity=0.190  Sum_probs=62.9

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChh
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~   82 (320)
                      ...+.|+|+|||++|.  +..+...+|.+++  ||+|.+|+++++++|+.++...++|.++++||+|+...+
T Consensus        69 ~~~~~~iDtPGh~~f~~~~~~~~~~~D~~il--Vvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          69 LPGLFFIDTPGHEAFTTLRKRGGALADLAIL--IVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGW  138 (227)
T ss_dssp             CCEEEEECCCTTSCCTTSBCSSSBSCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTC
T ss_pred             ccccccccccceecccccchhcccccceEEE--EEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCch
Confidence            3469999999999999  7888999999999  999999999999999999999999999999999987554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=3.3e-12  Score=113.09  Aligned_cols=81  Identities=12%  Similarity=0.122  Sum_probs=73.1

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL   90 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~   90 (320)
                      ...+.|+|+|||.+|+  +..+...+|.+++  ||+|.+|+..||+.....|+..++|.++++||||....+ ++..+++
T Consensus        70 ~~~~n~iDtPG~~dF~~e~~~~l~~~D~avl--Vvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad-~~~~l~e  146 (276)
T d2bv3a2          70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIV--VFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-LWLVIRT  146 (276)
T ss_dssp             TEEEEEECCCSSSSCSTTHHHHHHHCCEEEE--EEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCC-HHHHHHH
T ss_pred             CeEEEEecCCchhhhHHHHHHHHHhhhheEE--eccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccc-cchhHHH
Confidence            3569999999999999  8888999999999  999999999999999999999999999999999987643 4678888


Q ss_pred             HHHhhc
Q psy15138         91 LVRILK   96 (320)
Q Consensus        91 ~~~~l~   96 (320)
                      +++.|.
T Consensus       147 i~~~l~  152 (276)
T d2bv3a2         147 MQERLG  152 (276)
T ss_dssp             HHHTTC
T ss_pred             HHHHhC
Confidence            888775

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.23  E-value=1.5e-12  Score=114.96  Aligned_cols=79  Identities=24%  Similarity=0.164  Sum_probs=70.6

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL   91 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~   91 (320)
                      ..+.+||+|||.+|.  +..+...+|.+++  ||+|.+|++.||++++..|+..++|.++++||+|..  .+....+.++
T Consensus        67 ~~~n~iDtPGh~dF~~e~~~al~~~D~avl--vvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~--~~~~~~l~~~  142 (267)
T d2dy1a2          67 HRVFLLDAPGYGDFVGEIRGALEAADAALV--AVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDL  142 (267)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHH
T ss_pred             cceeEEccCchhhhhhhhhhhhcccCceEE--EeeccCCccchhHHHHHhhhhccccccccccccccc--ccchhhhhhH
Confidence            458999999999999  8999999999999  999999999999999999999999999999999974  3445667777


Q ss_pred             HHhhc
Q psy15138         92 VRILK   96 (320)
Q Consensus        92 ~~~l~   96 (320)
                      ++.+.
T Consensus       143 ~~~lg  147 (267)
T d2dy1a2         143 RSTLG  147 (267)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            77764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.22  E-value=9.2e-12  Score=103.23  Aligned_cols=115  Identities=20%  Similarity=0.223  Sum_probs=88.3

Q ss_pred             CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHH
Q psy15138         12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      ....+.++|+|||.+|.  +..+....|.+++  ++++.+|+.+|+++++..++.+++|.++|+||+|+...+..+...+
T Consensus        57 ~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~il--v~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~  134 (179)
T d1wb1a4          57 ENYRITLVDAPGHADLIRAVVSAADIIDLALI--VVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEM  134 (179)
T ss_dssp             TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEE--EEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHH
T ss_pred             CCccccccccccccccccchhhhhhhcccccc--ccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHH
Confidence            34568899999999999  7777888999988  9999999999999999999999999999999999999887766555


Q ss_pred             HHHHhhcC-CCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         90 LLVRILKS-PGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        90 ~~~~~l~~-~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      .++..++. ..+...+. +-.+..+.++.+++.+.+.+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~i-v~iSA~~g~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         135 IMKSILQSTHNLKNSSI-IPISAKTGFGVDELKNLIITTLN  174 (179)
T ss_dssp             HHHHHHHHSSSGGGCCE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeE-EEEEccCCcCHHHHHHHHHhcCC
Confidence            55554432 11222222 11344677788888888876654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=7.8e-12  Score=113.94  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      .+.+||+|||.+|.  +.++....|.|++  ||+|.+|+++||++++..|...++|++++|||+|.
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~all--VVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALV--VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEE--EEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEE--EEecccCcchhHHHHHHHHHHcCCCeEEEEECccc
Confidence            38899999999999  7788888999999  99999999999999999999999999999999995

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.54  E-value=8.6e-09  Score=83.90  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL  238 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~  238 (320)
                      +++|+||||||||||++.|+ |.+++..|.+....
T Consensus         2 ki~I~G~~G~GKSTLl~~i~-~~l~~~~g~~~~~~   35 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIV-ERLGKRAIGFWTEE   35 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HHHGGGEEEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHH-hcCCCCcceEEECC
Confidence            58999999999999999999 99999999887753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=2.2e-06  Score=70.50  Aligned_cols=109  Identities=16%  Similarity=0.063  Sum_probs=78.4

Q ss_pred             CceEEEeCCCc-------------chhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRIH-------------ERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pgh-------------~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl   78 (320)
                      ..+.++|+||-             .+++  ........|.+++  ++++++++.++..+++..++..++|+++|+||+|+
T Consensus        69 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~--viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~  146 (195)
T d1svia_          69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQ--IVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADK  146 (195)
T ss_dssp             TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             ccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhh--hhhccccccccccccccccccccCcceechhhccc
Confidence            34567788772             2222  3344566777767  99999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHH
Q psy15138         79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLI  128 (320)
Q Consensus        79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~  128 (320)
                      .++..+++.++.+++.+....-    .++. .++.+..+.+++...+.+.+
T Consensus       147 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         147 IPKGKWDKHAKVVRQTLNIDPE----DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SCGGGHHHHHHHHHHHHTCCTT----SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcccCC----CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9888888888888876653211    1122 33455556777777766543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=3.6e-06  Score=73.46  Aligned_cols=54  Identities=17%  Similarity=0.049  Sum_probs=37.3

Q ss_pred             CccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138         34 SPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLKLLV   92 (320)
Q Consensus        34 ~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~~~~   92 (320)
                      ..+|.++.  |++|..|......+-   .+.+.- |.++|+||+|+++.+..+++.+.+.
T Consensus        14 ~~~DvIl~--V~DaR~P~ss~~~~l---~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~   68 (273)
T d1puja_          14 KLIDIVYE--LVDARIPMSSRNPMI---EDILKNKPRIMLLNKADKADAAVTQQWKEHFE   68 (273)
T ss_dssp             GGCSEEEE--EEETTSTTTTSCHHH---HHHCSSSCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             HhCCEEEE--EEECCCCCCCCCHHH---HHHHcCCCeEEEEECccCCchHHHHHHHHHHH
Confidence            35677766  999999887654422   233334 8999999999998876655554444

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.87  E-value=9.1e-06  Score=65.71  Aligned_cols=105  Identities=14%  Similarity=0.111  Sum_probs=68.0

Q ss_pred             ceEEEeCCCcchhh----------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHc--CCCcEEEEeCCCCCChh
Q psy15138         15 AASVFETRIHERDD----------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL--SVPVFVVVTKIDMCPPN   82 (320)
Q Consensus        15 ~~~~~d~pgh~~~~----------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~   82 (320)
                      .+.++|+||+.+..          .......+|.+++  |++++++.....+..+...+..  +.|+++|+||+|+....
T Consensus        54 ~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~--v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~  131 (178)
T d1wf3a1          54 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVW--VVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP  131 (178)
T ss_dssp             EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEE--EEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred             eeeecccccccccccccchhcccccccccccccceee--eechhhhhcccccchhhheeccccchhhhhhhcccccccCH
Confidence            47888999985443          2333567788877  9999999888777666666655  34888999999997643


Q ss_pred             HHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         83 VLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        83 ~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                        ++..+.+...+..   ..+   +..+..+.++++++.+.+.+.+-
T Consensus       132 --~~~~~~~~~~~~~---~~~---~~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         132 --EEAMKAYHELLPE---AEP---RMLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             --HHHHHHHHHTSTT---SEE---EECCTTCHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHHHhhccc---Cce---EEEecCCCCCHHHHHHHHHHhCC
Confidence              2333444443211   111   11345677778888877766543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.85  E-value=1.4e-05  Score=64.52  Aligned_cols=111  Identities=15%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             CceEEEeCCCcchh-----------h------ccCCCCccchhhhccceecC-----------CCCchhHHHHHHHHHHc
Q psy15138         14 NAASVFETRIHERD-----------D------DLPEASPADHSMLQSKVGAN-----------AGIVGMTKEHLGLALAL   65 (320)
Q Consensus        14 ~~~~~~d~pgh~~~-----------~------~~~~~~~~d~~~l~~vv~a~-----------~g~~~~t~~~l~l~~~l   65 (320)
                      ..+.++|+||+...           .      ........|.+++  ++++.           .+...+..+.+..++..
T Consensus        43 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  120 (184)
T d2cxxa1          43 KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVL--VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL  120 (184)
T ss_dssp             TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEE--EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred             ccceecccCCceeccccccccccccchhhhhhhhhcccccchhee--eeeccccchhhhhhhhccccHHHHHHHHHHHHc
Confidence            44778999997211           1      1122345677766  88875           46777888888889999


Q ss_pred             CCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHH
Q psy15138         66 SVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        66 ~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      ++|.++|+||+|+.+..  +...+.+...+.. .+......+. .++.+.+..++++..+.+.+.
T Consensus       121 ~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         121 DIPTIVAVNKLDKIKNV--QEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             TCCEEEEEECGGGCSCH--HHHHHHHHHHHTC-CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeeeehhhhH--HHHHHHHHHHhcc-cccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            99999999999986432  1222222222211 1221111121 234555678888777766544

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=1e-05  Score=65.55  Aligned_cols=109  Identities=17%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             CceEEEeCCCcchhhc--------------cCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         14 NAASVFETRIHERDDD--------------LPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~--------------~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      ..+.++|+||+.....              +.....+|.+++  |++++.|+..+.++++.+++..+.|.++++||+|+.
T Consensus        56 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~--v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~  133 (186)
T d1mkya2          56 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVI--VLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV  133 (186)
T ss_dssp             EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred             ceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEE--eecccccchhhHHHHHHHHHHcCCceeeeccchhhh
Confidence            3467789999976551              111345666766  999999999999999999999999999999999986


Q ss_pred             Chh--HHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         80 PPN--VLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        80 ~~~--~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ...  .++++.+.+...+..  +..++. +..+..+..+.++|...+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~--~~~~~i-~~vSa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         134 VHREKRYDEFTKLFREKLYF--IDYSPL-IFTSADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             TTGGGCHHHHHHHHHHHCGG--GTTSCE-EECBTTTTBSHHHHHHHHHHH
T ss_pred             cchhhhhhhHHHHHHHHhcc--cCCCeE-EEEeCCCCCCHHHHHHHHHHH
Confidence            332  345554555443221  222221 123345556677777666554

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.65  E-value=9.3e-06  Score=68.47  Aligned_cols=74  Identities=9%  Similarity=-0.052  Sum_probs=55.1

Q ss_pred             CCceEEEeCCCcchhh--ccCCCCcc-----chhhhccceecCCCCchhHHHHHHHH-----HHcCCCcEEEEeCCCCCC
Q psy15138         13 ENAASVFETRIHERDD--DLPEASPA-----DHSMLQSKVGANAGIVGMTKEHLGLA-----LALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        13 ~~~~~~~d~pgh~~~~--~~~~~~~~-----d~~~l~~vv~a~~g~~~~t~~~l~l~-----~~l~i~~~v~lnk~Dl~~   80 (320)
                      +..+.++|+|||..+.  +..+....     +.+++  ++++..+..+++.++..+.     ..+.+|.++++||+|+.+
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~--vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVY--ISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS  171 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEE--EECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEE--EeccccccCchhHhhHHHHHHHHHHHhCCCceeeeecccccc
Confidence            3558899999999997  44443333     34555  9999999999888655443     456779999999999999


Q ss_pred             hhHHHHHH
Q psy15138         81 PNVLQDTL   88 (320)
Q Consensus        81 ~~~le~~l   88 (320)
                      .++.+...
T Consensus       172 ~~~~~~~~  179 (244)
T d1yrba1         172 EEEKERHR  179 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.1e-05  Score=63.83  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |..++|+||||||||||++.|. ...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~-~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLR-ERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH-HHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-hhC
Confidence            6779999999999999999997 443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=0.00015  Score=57.78  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             CccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccccCCc
Q psy15138         34 SPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPT  113 (320)
Q Consensus        34 ~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gn  113 (320)
                      ..+|.+++  +++++++...+.++.+.+++..++|+++|+||+|+...... +...++.+   . ....+   +..+..+
T Consensus        79 ~~ad~i~~--~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-~~~~~~~~---~-~~~~~---i~iSAk~  148 (171)
T d1mkya1          79 READLVLF--VVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFER-EVKPELYS---L-GFGEP---IPVSAEH  148 (171)
T ss_dssp             TTCSEEEE--EEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-HTHHHHGG---G-SSCSC---EECBTTT
T ss_pred             ccCcEEEE--eecccccccccccccccccccccccccccchhhhhhhhhhh-HHHHHHHh---c-CCCCe---EEEecCC
Confidence            34566666  89999999999998899999999999999999999654322 22222222   1 12221   1234566


Q ss_pred             hhHHHHHHHHHHHHHHcCc
Q psy15138        114 EEQFDLLQKKIKSLIDNGR  132 (320)
Q Consensus       114 yd~~~~l~~q~~~~~~~~~  132 (320)
                      .+.++++++.+.+.+.+..
T Consensus       149 g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         149 NINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             TBSHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhCCCCC
Confidence            6778888888777666544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.1e-05  Score=62.25  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .++|+|++|||||||++.|. ..+
T Consensus         4 vi~itG~~GSGKTTL~~~L~-~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLI-PAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH-HHH
Confidence            47999999999999999998 443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.47  E-value=2.3e-06  Score=70.75  Aligned_cols=23  Identities=48%  Similarity=0.725  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .+||+|+.++|||||++.|. |..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~-g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALT-GVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-TCC
T ss_pred             EEEEEeccCCcHHHHHHHHH-hhh
Confidence            37999999999999999998 754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.44  E-value=4.4e-06  Score=69.60  Aligned_cols=30  Identities=37%  Similarity=0.485  Sum_probs=26.4

Q ss_pred             HHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        288 ITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       288 l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      +.++|..|+.++......+++.  .|+++|||
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~--ad~ailvV  117 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAAL--MDGAILVV  117 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSC--CSEEEEEE
T ss_pred             EEEeccchHHHHHhhhhcceec--cccccccc
Confidence            3678889999999999999987  89999887

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.43  E-value=3.8e-05  Score=61.03  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=22.9

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .|..+.|.||+||||||+.+.|. ..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La-~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALA-NLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHH-TCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH-HHh
Confidence            47789999999999999999998 544

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.41  E-value=3.4e-05  Score=61.56  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+|+|+||+|||||||.+.|+
T Consensus         8 K~I~i~G~~GsGKTTla~~La   28 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLA   28 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999998

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=0.00036  Score=55.82  Aligned_cols=107  Identities=13%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             CceEEEeCCCcchh-------h--ccCCCCccchhhhccceecCCCCchh---HHHHHHH--HHHcCCCcEEEEeCCCCC
Q psy15138         14 NAASVFETRIHERD-------D--DLPEASPADHSMLQSKVGANAGIVGM---TKEHLGL--ALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        14 ~~~~~~d~pgh~~~-------~--~~~~~~~~d~~~l~~vv~a~~g~~~~---t~~~l~l--~~~l~i~~~v~lnk~Dl~   79 (320)
                      ..+.++|+||+.+-       .  ++......|..+.  ++++.......   .+..+..  ....+.|.++|+||+|+.
T Consensus        49 ~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          49 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLY--VLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  126 (180)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEE--EEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             CeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhh--hcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            45888999994321       1  3333455555555  77766543321   1222221  233456899999999999


Q ss_pred             ChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHc
Q psy15138         80 PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDN  130 (320)
Q Consensus        80 ~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~  130 (320)
                      ..+..++..+.+..    .   ..+. +..++.+.+..++++..+.+.+.+
T Consensus       127 ~~~~~~~~~~~~~~----~---~~~~-~~iSA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         127 EEEAVKALADALAR----E---GLAV-LPVSALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             CHHHHHHHHHHHHT----T---TSCE-EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHh----c---CCeE-EEEEcCCCCCHHHHHHHHHHHHhh
Confidence            88777665554443    1   1111 224456777888888888776543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=3e-05  Score=61.82  Aligned_cols=30  Identities=23%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      .|.|+||+|+|||||++.++ ..+....+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~-~~l~~~~~~v   32 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS-EVLKSSGVPV   32 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH-HHHHHTTCCC
T ss_pred             EEEEECCCCCcHHHHHHHHH-HHHHHCCCEE
Confidence            47899999999999999999 7775544333

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.23  E-value=7.7e-05  Score=59.12  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..++|.||+||||||+.+.|+
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La   26 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHH
Confidence            6679999999999999999998

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.23  E-value=7.5e-05  Score=59.19  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+|.+|.|+|++||||||+.+.|+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            347889999999999999999998

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.21  E-value=0.00016  Score=60.78  Aligned_cols=29  Identities=31%  Similarity=0.454  Sum_probs=24.3

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..|+.++......++++  .|++++||
T Consensus        73 ~~iDtPGh~~f~~~~~~~~~~--~D~~ilVv  101 (227)
T d1g7sa4          73 FFIDTPGHEAFTTLRKRGGAL--ADLAILIV  101 (227)
T ss_dssp             EEECCCTTSCCTTSBCSSSBS--CSEEEEEE
T ss_pred             ccccccceecccccchhcccc--cceEEEEE
Confidence            467888998888888888877  89999886

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.19  E-value=7.1e-05  Score=59.10  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++|+||+||||||+.+.|+
T Consensus         7 I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999997

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=7.7e-05  Score=58.04  Aligned_cols=20  Identities=40%  Similarity=0.519  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|.|+||+||||||+.+.|+
T Consensus         4 ~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999998

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=9.1e-05  Score=58.16  Aligned_cols=25  Identities=40%  Similarity=0.688  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |-+|+++|+.++|||||++.|+ |.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~-~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALA-GRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH-TSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCC
Confidence            5679999999999999999998 753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=9.3e-05  Score=58.50  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +..+.|+||+||||||+.+.|+ ..+
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La-~~l   30 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVA-HQL   30 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHH-HHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH-HHh
Confidence            5568999999999999999998 443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=8.5e-05  Score=60.01  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|||.||+|||||||.+.|.
T Consensus        24 iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999987

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00017  Score=58.92  Aligned_cols=66  Identities=11%  Similarity=0.086  Sum_probs=41.3

Q ss_pred             CceEEEeCCCcchhh------ccCCCCccchhhhccceecCCCCc--hhHHHHH-------HHHHHcCCCcEEEEeCCCC
Q psy15138         14 NAASVFETRIHERDD------DLPEASPADHSMLQSKVGANAGIV--GMTKEHL-------GLALALSVPVFVVVTKIDM   78 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~------~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l-------~l~~~l~i~~~v~lnk~Dl   78 (320)
                      ..+.++|+|||+++.      ........|.+++  ++.+.....  ..+.+++       ..+...++|+++++||+|+
T Consensus        46 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~--~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~  123 (209)
T d1nrjb_          46 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF--MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  123 (209)
T ss_dssp             SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE--EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             eEEEEEecccccchhhHHHHHHHHHhhhccccce--EEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecc
Confidence            347899999999876      2222444455555  677664433  3333333       3344456788999999998


Q ss_pred             CCh
Q psy15138         79 CPP   81 (320)
Q Consensus        79 ~~~   81 (320)
                      ...
T Consensus       124 ~~~  126 (209)
T d1nrjb_         124 FTA  126 (209)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.14  E-value=5.4e-05  Score=60.20  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      .++|+|++|||||||++-|. ..+..
T Consensus         3 ii~I~G~~gSGKTTli~~l~-~~L~~   27 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWV-AAAVR   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH-HHHHh
Confidence            47999999999999998887 55543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.13  E-value=9.8e-05  Score=60.15  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +|+|+|++|+|||||++.|. |.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~-g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI-NR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH-TC
T ss_pred             EEEEECCCCCCHHHHHHHhc-CC
Confidence            59999999999999999999 75

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00011  Score=60.99  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |..+.|+||||||||||.+.|.
T Consensus         2 G~livi~GPSG~GK~tl~~~L~   23 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALL   23 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            6678999999999999998886

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.10  E-value=0.00012  Score=56.80  Aligned_cols=20  Identities=25%  Similarity=0.300  Sum_probs=18.0

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+.|.||+|||||||.+.|.
T Consensus         4 lIii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999775

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=9.5e-05  Score=59.70  Aligned_cols=24  Identities=33%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        200 FLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       200 ~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++|.+|.|+|++||||||+.+.|+
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            357789999999999999999998

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=9.6e-05  Score=64.42  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ...+|+|||||||||+|.+|.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            367999999999999999885

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.06  E-value=8.2e-06  Score=69.01  Aligned_cols=29  Identities=24%  Similarity=0.512  Sum_probs=26.4

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..||.++.+...++++.  .|.++|||
T Consensus        92 ~iiD~PGH~dfv~~~~~g~~~--aD~ailVv  120 (222)
T d1zunb3          92 IIADTPGHEQYTRNMATGAST--CDLAIILV  120 (222)
T ss_dssp             EEEECCCSGGGHHHHHHHHTT--CSEEEEEE
T ss_pred             EEEeccchhhhhhhhcccccc--CceEEEEe
Confidence            578889999999999999988  99999987

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.06  E-value=0.00014  Score=57.37  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ..|.|.|++||||||+.+.|+ ..+
T Consensus         4 kiI~l~G~~GsGKsTva~~L~-~~l   27 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQ-SVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH-HHS
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HHc
Confidence            457899999999999999999 554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.04  E-value=0.00015  Score=57.73  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ..|+|.|++||||||+++.|+ -.+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~-~~l   25 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAM-DNL   25 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH-HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH-HHH
Confidence            468999999999999999997 443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=6.4e-05  Score=62.40  Aligned_cols=29  Identities=28%  Similarity=0.508  Sum_probs=24.9

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..|+.++.....++++-  .|.++|||
T Consensus        70 ~iiDtPGh~df~~~~~~~~~~--aD~avlVv   98 (204)
T d2c78a3          70 SHVDCPGHADYIKNMITGAAQ--MDGAILVV   98 (204)
T ss_dssp             EEEECCCSGGGHHHHHHHHTT--CSSEEEEE
T ss_pred             EEEeCCCchhhHHHHHHHHHH--CCEEEEEE
Confidence            577888999999999888887  99998886

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.01  E-value=0.00016  Score=56.78  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .+.|.||+||||||+.+.|+ ..+
T Consensus         4 lI~i~G~~GsGKTTva~~L~-~~~   26 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLA-AQL   26 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHS
T ss_pred             EEEEECCCCCCHHHHHHHHH-HHc
Confidence            47899999999999999998 544

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00015  Score=58.91  Aligned_cols=19  Identities=42%  Similarity=0.566  Sum_probs=17.9

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      |+|+||||||||||++.|.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~   22 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLF   22 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999886

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.96  E-value=0.0001  Score=60.72  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..|+.++.....++++-  .|+++|||
T Consensus        69 ~~iDtPGh~~f~~~~~~~~~~--aD~allVV   97 (196)
T d1d2ea3          69 AHTDCPGHADYVKNMITGTAP--LDGCILVV   97 (196)
T ss_dssp             EEEECSSHHHHHHHHHHTSSC--CSEEEEEE
T ss_pred             EeecCcchHHHHHHHHHHHhh--cCeEEEEE
Confidence            456777888888788777765  88998886

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.95  E-value=0.00016  Score=57.51  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .-+++|+|++|+|||||++.|. +-.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~-~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLK-DDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHS-CC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CCC
Confidence            4469999999999999999998 543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00021  Score=57.39  Aligned_cols=24  Identities=42%  Similarity=0.702  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +-+|||+|++|+|||||++.|. |.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~-~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAIL-NK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH-TS
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-CC
Confidence            4569999999999999999998 64

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.91  E-value=0.00023  Score=57.69  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHh
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|.+++|+||.||||||+.+.|+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            36789999999999999999998

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.0002  Score=58.48  Aligned_cols=19  Identities=53%  Similarity=0.580  Sum_probs=17.7

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      |+|+||||||||||++.|.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~   21 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLF   21 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6899999999999999886

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.90  E-value=0.00021  Score=59.72  Aligned_cols=20  Identities=40%  Similarity=0.586  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +++|+||.|||||||++.|.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            58999999999999999887

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=7.4e-05  Score=60.18  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..++|+|||||||||+|.+|.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            356899999999999999886

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00019  Score=55.70  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++|+|++|+|||||++.|..+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999833

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00023  Score=58.76  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|||.|++||||||+.+.|.
T Consensus         4 iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999886

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00025  Score=56.28  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +|+|+|+.|+|||||++.|+ |..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~-~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV-KKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-C--
T ss_pred             EEEEECCCCCCHHHHHHHHh-CCC
Confidence            58999999999999999998 753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00022  Score=57.68  Aligned_cols=20  Identities=15%  Similarity=0.386  Sum_probs=18.3

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++|+||||+|||||++-|.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~   24 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLI   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999886

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.86  E-value=0.00021  Score=55.51  Aligned_cols=20  Identities=45%  Similarity=0.557  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|+|+|++|+|||||++.+.
T Consensus         2 kivlvG~~~vGKSsLi~~l~   21 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLK   21 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999887

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.85  E-value=0.00025  Score=56.75  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .|+|+|++|+|||||++.|. |.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~-~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLT-GK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHh-CC
Confidence            48999999999999999999 75

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.0003  Score=57.36  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNG  230 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~  230 (320)
                      +|+|+|++|||||||++.|..+...|+
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~~~~~   31 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDSVRPT   31 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSSCCCB
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCe
Confidence            589999999999999999983434443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.83  E-value=0.00028  Score=56.42  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++.|+||.||||||+.+.|+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999997

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.81  E-value=0.00027  Score=57.34  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+|+|+||.||||||+.+.|+
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La   27 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999998

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.77  E-value=0.0003  Score=55.66  Aligned_cols=19  Identities=37%  Similarity=0.592  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.|+|++||||||+.+.|+
T Consensus         3 I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999998

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.77  E-value=0.00027  Score=55.19  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -+++|+|++|+|||||++.+.
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~   26 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQ   26 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999888

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.00027  Score=56.02  Aligned_cols=20  Identities=35%  Similarity=0.428  Sum_probs=18.5

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++.|+|++||||||+.+.|+
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999998

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.76  E-value=0.00027  Score=57.20  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTH  224 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~  224 (320)
                      ++.|+||.||||||+.+.|+.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999983

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.00021  Score=57.51  Aligned_cols=21  Identities=48%  Similarity=0.658  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHhcCc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      |||+|++++|||||++.|+ |.
T Consensus         4 VaiiG~~nvGKSSLin~L~-~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS-SA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE-EE
T ss_pred             EEEECCCCCCHHHHHHHHh-CC
Confidence            8999999999999999997 53

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00052  Score=60.93  Aligned_cols=25  Identities=40%  Similarity=0.525  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .-+|+|+||.|||||||+..|. ..+
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~-~~~   78 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFG-MLL   78 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHH-HHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHH-HHH
Confidence            3459999999999999999887 443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.73  E-value=0.00038  Score=55.62  Aligned_cols=22  Identities=55%  Similarity=0.684  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .|+|+|++|+|||||++.|. |.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~-~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLL-GV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-TS
T ss_pred             EEEEECCCCCCHHHHHHHHh-CC
Confidence            48999999999999999999 75

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00041  Score=55.11  Aligned_cols=21  Identities=52%  Similarity=0.819  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHhcCc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      |+|+|.+++|||||++.|. |.
T Consensus         8 I~iiG~~nvGKSSLin~L~-~~   28 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLL-GQ   28 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHH-TC
T ss_pred             EEEECCCCCCHHHHHHHHh-CC
Confidence            7999999999999999998 64

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00041  Score=56.39  Aligned_cols=21  Identities=33%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+++|+||.||||||+.+.|+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La   29 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLV   29 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999999

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.68  E-value=0.00056  Score=53.72  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      -+++|+|+.|+|||||++.|. +..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~-~~~   26 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFN-GED   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHT-TCC
T ss_pred             EEEEEECCCCCCHHHHHHHHc-CCC
Confidence            368999999999999999998 643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.68  E-value=0.00037  Score=55.47  Aligned_cols=19  Identities=26%  Similarity=0.335  Sum_probs=18.0

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.|+|++||||||+.+.|+
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6799999999999999998

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00046  Score=55.84  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTH  224 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~  224 (320)
                      +|+|+||.||||||..+.|+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999983

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.63  E-value=0.00047  Score=55.33  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|.|+||.||||||+.+.|+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La   21 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIV   21 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999999

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00026  Score=56.37  Aligned_cols=24  Identities=46%  Similarity=0.631  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .-+|+|+|++++|||||++.|. +.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~-~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLT-NQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTC-CC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh-CC
Confidence            4569999999999999999998 64

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.61  E-value=1.6e-05  Score=67.13  Aligned_cols=30  Identities=30%  Similarity=0.574  Sum_probs=27.1

Q ss_pred             HHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        288 ITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       288 l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      +.++|..||.+|......+++.  .|.++|||
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~--~D~allVV  112 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQ--ADAAILVV  112 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSC--CSEEEEEE
T ss_pred             eEEeeCCCcHHHHHHHHHHHHh--hceEEEEE
Confidence            4678999999999999999998  89999987

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.00032  Score=56.18  Aligned_cols=22  Identities=45%  Similarity=0.631  Sum_probs=20.1

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      |||+|++++|||||++.|+ |..
T Consensus         4 VaivG~~nvGKSTLin~L~-~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT-RAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC-SSC
T ss_pred             EEEECCCCCCHHHHHHHHh-CCC
Confidence            7999999999999999998 653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.59  E-value=0.0011  Score=51.95  Aligned_cols=70  Identities=7%  Similarity=-0.025  Sum_probs=43.3

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-CchhHHHHHHH----HHHcCCCcEEEEeCCCCCChhHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-IVGMTKEHLGL----ALALSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~l----~~~l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      .+.+.|+||+++|.  .-.-...+|.+++  ++++.+- ......+.+.-    ....++|.+++.||+|+......++
T Consensus        47 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~--v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  123 (165)
T d1ksha_          47 KLNIWDVGGQKSLRSYWRNYFESTDGLIW--VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA  123 (165)
T ss_dssp             EEEEEEECCSHHHHTTGGGGCTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             ceeeeecCcchhhhhHHHhhhhhhhccee--eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHH
Confidence            47788999999996  2223455666666  8887652 22333333322    2234567888889999975444443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00051  Score=54.93  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++.|+||.||||||..+.|+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999998

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.00055  Score=54.80  Aligned_cols=20  Identities=40%  Similarity=0.441  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++.|+||.||||||+.+.|+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999998

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.54  E-value=0.00073  Score=53.14  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      -+++++|++|+|||||++.+.++..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~   27 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQF   27 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3689999999999999998874443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.53  E-value=0.00055  Score=54.48  Aligned_cols=23  Identities=35%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ++.|.|++||||||+.+.|+ ..+
T Consensus         3 iivi~G~~GsGKTT~~~~La-~~L   25 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVK-EIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHHHHHH-HHH
Confidence            46788999999999999998 444

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.52  E-value=0.00059  Score=56.29  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTH  224 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~  224 (320)
                      +|+|-||+||||||..+.|+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999994

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.0019  Score=52.27  Aligned_cols=66  Identities=11%  Similarity=0.028  Sum_probs=43.0

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHHcCC--CcEEEEeCCCCCChh
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSV--PVFVVVTKIDMCPPN   82 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i--~~~v~lnk~Dl~~~~   82 (320)
                      .+.++|+||+++|..+  .....+|.+++  |++.+....  .....+..+.+...-  |++++.||.|+....
T Consensus        56 ~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~--v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~  127 (194)
T d2bcgy1          56 KLQIWDTAGQERFRTITSSYYRGSHGIII--VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR  127 (194)
T ss_dssp             EEEEECCTTTTTTTCCCGGGGTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEEEECCCchhhHHHHHHHhccCCEEEE--EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccccc
Confidence            4677899999999822  22456677777  999886332  344444445444443  566777999997543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.48  E-value=0.00064  Score=54.56  Aligned_cols=23  Identities=43%  Similarity=0.661  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -.|||+|+.+||||||++.|. +.
T Consensus         6 inIaiiG~~naGKSTL~n~L~-~~   28 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLT-EI   28 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH-TT
T ss_pred             EEEEEEeCCCCcHHHHHHHHH-Hh
Confidence            358999999999999999998 64

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.48  E-value=0.0005  Score=55.69  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      -.|+|-|+.||||||+++.|. ..+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~-~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFE-KYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTG-GGT
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HHh
Confidence            358999999999999999998 554

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.47  E-value=0.0007  Score=53.55  Aligned_cols=24  Identities=38%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .-+++|+|.+|||||||++.|. +.
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~-~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFS-MN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH-TT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh-cC
Confidence            4569999999999999999998 54

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00082  Score=53.25  Aligned_cols=64  Identities=19%  Similarity=0.154  Sum_probs=35.2

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHH-HHHH------cCCCcEEEEeCCCCCCh
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LALA------LSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~------l~i~~~v~lnk~Dl~~~   81 (320)
                      +.+.|+||++++.  .-.-...+|.+++  |.+.++... ...++.+. +.+.      -.+|++++.||+|+.+.
T Consensus        54 ~~~~d~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          54 MQVWDTAGQERFQSLGVAFYRGADCCVL--VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             EEEECCC----------CCSTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             ceeeccCCchhhhhHHHHHhhccceEEE--EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            6677999999998  3344667777777  888876332 22222222 2221      25688889999998653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.00063  Score=54.95  Aligned_cols=20  Identities=35%  Similarity=0.670  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++||.|++||||||+.+.|.
T Consensus         5 IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999997

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.00022  Score=55.82  Aligned_cols=22  Identities=50%  Similarity=0.733  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|++++|||||++.|. |.
T Consensus         2 kI~liG~~n~GKSSLin~l~-g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLL-NE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHHh-CC
Confidence            58999999999999999998 65

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.44  E-value=0.0012  Score=56.08  Aligned_cols=29  Identities=28%  Similarity=0.650  Sum_probs=15.4

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..||.++.....++++.  .|+++|||
T Consensus       105 ~~iDtPGH~df~~~~~~g~~~--aD~ailVV  133 (245)
T d1r5ba3         105 SLLDAPGHKGYVTNMINGASQ--ADIGVLVI  133 (245)
T ss_dssp             EECCCCC-----------TTS--CSEEEEEE
T ss_pred             eeecccccccchhhhhhhhhh--hcceeeEE
Confidence            567889999999999999887  99999987

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.43  E-value=0.0012  Score=52.70  Aligned_cols=65  Identities=9%  Similarity=-0.045  Sum_probs=38.6

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHH-HHH---HcCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLG-LAL---ALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~-l~~---~l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.+.|+||+++|.  .-.-...+|.+++  |++.++.... ..++.+. +.+   ..+.|++|+.||+|+...
T Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~~~ii~--v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~  133 (182)
T d1moza_          62 KLNVWDLGGQTSIRPYWRCYYADTAAVIF--VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA  133 (182)
T ss_dssp             EEEEEEEC----CCTTGGGTTTTEEEEEE--EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             EEEEEecccccccchhHHhhhccceeEEE--EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc
Confidence            47788999999997  2333557777777  9998875443 3334432 222   223467777799999753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.43  E-value=0.00059  Score=53.72  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=44.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHH-HHHH---HcCCCcEEEEeCCCCCChhHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHL-GLAL---ALSVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      .+.+.|+|||++|.  .......+|.+++  |+++++.. ..-.+..+ .+.+   .-++|.+++.||.|+......++.
T Consensus        48 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i  125 (164)
T d1zd9a1          48 TIKLWDIGGQPRFRSMWERYCRGVSAIVY--MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKEL  125 (164)
T ss_dssp             EEEEEEECCSHHHHTTHHHHHTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHH
T ss_pred             EEEEeeccccccccccccccccccchhhc--ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHH
Confidence            46788999999998  2222456777766  88887532 22222222 2332   235688888899999754433433


Q ss_pred             HH
Q psy15138         88 LK   89 (320)
Q Consensus        88 l~   89 (320)
                      .+
T Consensus       126 ~~  127 (164)
T d1zd9a1         126 IE  127 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.42  E-value=0.00076  Score=54.76  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTH  224 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~  224 (320)
                      .-+++|+||.||||||+.+.|+.
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999993

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.00075  Score=60.83  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ...+|+|||||||||+|..|.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999999884

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0008  Score=53.91  Aligned_cols=21  Identities=38%  Similarity=0.506  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++.|+||.||||||+.+.|+
T Consensus         3 mrIvl~G~pGSGKtT~a~~La   23 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQ   23 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            368899999999999999998

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.0011  Score=52.52  Aligned_cols=23  Identities=22%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|++|+|||||++.+.++.
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHcCC
Confidence            58999999999999999877333

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.0011  Score=52.38  Aligned_cols=64  Identities=17%  Similarity=-0.000  Sum_probs=40.2

Q ss_pred             ceEEEeCCCcchhh-c-cCCCCccchhhhccceecCCCCch-hHHHHHHHHHHcCC---CcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD-D-LPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALALSV---PVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~-~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~i---~~~v~lnk~Dl~~   80 (320)
                      .+.+.|+||+++|. + -.....+|.+++  |++.+....- ...+.....+....   |++++.||.|+..
T Consensus        55 ~l~~wDt~G~e~~~~~~~~~~~~ad~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  124 (169)
T d3raba_          55 KLQIWDTAGQERYRTITTAYYRGAMGFIL--MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED  124 (169)
T ss_dssp             EEEEEEECCSGGGHHHHHTTTTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG
T ss_pred             EEEEEECCCchhhHHHHHHHHhcCCEEEE--EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc
Confidence            47788999999998 2 223667888888  9998874321 11122333333333   4556669999853

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00094  Score=54.55  Aligned_cols=65  Identities=20%  Similarity=0.126  Sum_probs=38.6

Q ss_pred             ceEEEeCCCcchhh--c-cCCCCccchhhhccceecCCCCch--hHHHHH-HH---HHHc--CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--D-LPEASPADHSMLQSKVGANAGIVG--MTKEHL-GL---ALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~-~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l-~l---~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+|||++|.  + -.-...+|.+++  |+++.+....  -..+.+ .+   ...+  .+|++|+.||+|+...
T Consensus        48 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~--v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          48 SLTLIDLPGHESLRFQLLDRFKSSARAVVF--VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHGGGEEEEEE--EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             eeeeeeccccccccchhhhhhhhhccccce--EEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            47788999999986  2 222356666666  8888753322  111222 22   2222  2466777899999753

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.001  Score=56.31  Aligned_cols=29  Identities=31%  Similarity=0.610  Sum_probs=26.2

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..||.+|.....++++-  .|.|+|||
T Consensus        87 ~iiDtPGH~df~~~~~~g~~~--~D~ailvv  115 (239)
T d1f60a3          87 TVIDAPGHRDFIKNMITGTSQ--ADCAILII  115 (239)
T ss_dssp             EEEECCCCTTHHHHHHHSSSC--CSEEEEEE
T ss_pred             EEEECCCcHHHHHHHHHHHHH--hCEEEEEE
Confidence            678889999999999999887  99999987

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.34  E-value=0.00086  Score=57.28  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++|+|.+|+|||||+|.|. |..
T Consensus        34 ~I~LvG~tg~GKSSliN~il-g~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSII-GER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHH-TSC
T ss_pred             EEEEECCCCCcHHHHHHHHh-CCC
Confidence            48999999999999999999 764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.0011  Score=52.34  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|++|+|||||++.+.++.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~~   29 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADDS   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHcCC
Confidence            48999999999999999776343

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.32  E-value=0.00094  Score=54.09  Aligned_cols=22  Identities=27%  Similarity=0.299  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.++.|+||.||||||+.+.|+
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La   29 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIV   29 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999998

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00091  Score=54.81  Aligned_cols=31  Identities=23%  Similarity=0.193  Sum_probs=23.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhc--CcCCCCCcee
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTH--GELDNGRGHA  234 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~--G~l~~~~G~i  234 (320)
                      +|+|.||.||||||+.+.|+.  |+...++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            489999999999999999994  3333344544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.002  Score=50.97  Aligned_cols=61  Identities=15%  Similarity=0.101  Sum_probs=30.7

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCchhHHHHH-----HH--HHHcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVGMTKEHL-----GL--ALALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l-----~l--~~~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|+|||++|..  -.....+|.+++  |++.+++.   +.+++     .+  .....+|++++.||.|+..
T Consensus        56 ~l~i~D~~G~e~~~~~~~~~~~~~~~~i~--v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~  125 (173)
T d2fu5c1          56 KLQIWDTAGQERFRTITTAYYRGAMGIML--VYDITNEK---SFDNIRNWIRNIEEHASADVEKMILGNKCDVND  125 (173)
T ss_dssp             EEEEEEC---------CCTTTTTCSEEEE--EEETTCHH---HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred             EEEEEECCCchhhHHHHHHhccCCCEEEE--EEECCChh---hHHHHHHHHHHhhhhccCCceEEEEEecccchh
Confidence            367789999999992  223566788877  99998733   33222     12  2222236677779999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.32  E-value=0.00037  Score=60.13  Aligned_cols=20  Identities=45%  Similarity=0.640  Sum_probs=18.1

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .++|+|+.|+|||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            38999999999999999884

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.31  E-value=0.00094  Score=54.24  Aligned_cols=20  Identities=30%  Similarity=0.346  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|+++|.+|||||||.+.|+
T Consensus         4 li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999998

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0014  Score=51.38  Aligned_cols=23  Identities=35%  Similarity=0.554  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|++|+|||||++.+.++.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~~   26 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKGI   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999998666343

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0011  Score=53.03  Aligned_cols=22  Identities=36%  Similarity=0.293  Sum_probs=19.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -..+.++|++||||||+.+-+.
T Consensus        14 p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999886

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.00056  Score=59.19  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=23.3

Q ss_pred             HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      .++|..|+.++......+|+.  .|.|+|||
T Consensus        74 n~iDtPG~~dF~~e~~~~l~~--~D~avlVv  102 (276)
T d2bv3a2          74 NIIDAPGHVDFTIEVERSMRV--LDGAIVVF  102 (276)
T ss_dssp             EEECCCSSSSCSTTHHHHHHH--CCEEEEEE
T ss_pred             EEecCCchhhhHHHHHHHHHh--hhheEEec
Confidence            577788888888888888876  88888776

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.23  E-value=0.001  Score=52.60  Aligned_cols=22  Identities=45%  Similarity=0.697  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .-+++++|+.|+|||||++.+.
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            4569999999999999999998

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.22  E-value=0.0014  Score=57.90  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ  236 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~  236 (320)
                      +..+.|.||.|||||||++.|. +.+++..=-+.+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~-~~i~~~~rivti  199 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIM-EFIPKEERIISI  199 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHG-GGSCTTCCEEEE
T ss_pred             CCCEEEEeeccccchHHHHHHh-hhcccccceeec
Confidence            4568999999999999999999 998876544444

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.21  E-value=0.0038  Score=54.99  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .-+++|.||.|||||||+..|.
T Consensus        51 ~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHH
Confidence            3458999999999999998887

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.21  E-value=0.001  Score=55.75  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=21.0

Q ss_pred             CCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        198 QDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       198 ~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+.+..+.|.|||.+||||+||.++
T Consensus        31 i~~~~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          31 LEMAHELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEESSCEEEEESCSSSSHHHHHHHHH
T ss_pred             EEeCCcEEEEECCCccccchhhhhhH
Confidence            33345568999999999999999775

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0014  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|.+|+|||||++.+.++.
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999877454

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0016  Score=51.45  Aligned_cols=23  Identities=30%  Similarity=0.647  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|+.|+|||||++.+.++.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48999999999999999887444

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0013  Score=51.63  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++++|++|+|||||++.+.++
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999887734

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0016  Score=51.75  Aligned_cols=23  Identities=39%  Similarity=0.683  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|+.|+|||||++.+.++.
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48999999999999999776343

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0013  Score=54.00  Aligned_cols=20  Identities=30%  Similarity=0.612  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+||+|+.||||||+.+.+.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999987

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=51.92  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|+.|+|||||++.+.++.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            48999999999999999888333

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0019  Score=50.48  Aligned_cols=24  Identities=25%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|..|+|||||++.+.++..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~~~   27 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAGRF   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            489999999999999987764543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.07  E-value=0.0013  Score=54.59  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=25.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCce
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGH  233 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~  233 (320)
                      ++.|+|.+|+|||||++-+..+...|+-|-
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG~   37 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI   37 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence            589999999999999987765777788774

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0015  Score=53.24  Aligned_cols=23  Identities=39%  Similarity=0.521  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .|+|+|+.|+|||||++.|..+.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999988343

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.0018  Score=51.76  Aligned_cols=23  Identities=22%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|.+|+|||||++.+.+|.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~~   26 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNKK   26 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999998777455

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.0019  Score=50.02  Aligned_cols=98  Identities=14%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             ceEEEeCCCcchhh-----------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCCChh
Q psy15138         15 AASVFETRIHERDD-----------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPN   82 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-----------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~   82 (320)
                      .+.++|+||+....           -+.....+|.+++  |++++++...+..+   +-..+.- +.++++||+|+.+..
T Consensus        49 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~--v~d~~~~~~~~~~~---~~~~~~~~~~i~~~~k~d~~~~~  123 (160)
T d1xzpa2          49 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLF--VLDASSPLDEEDRK---ILERIKNKRYLVVINKVDVVEKI  123 (160)
T ss_dssp             EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEE--EEETTSCCCHHHHH---HHHHHTTSSEEEEEEECSSCCCC
T ss_pred             eEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEE--EEeCCCCcchhhhh---hhhhcccccceeeeeeccccchh
Confidence            47778999963221           1222456677777  99999988765543   2333344 788999999998776


Q ss_pred             HHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138         83 VLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS  126 (320)
Q Consensus        83 ~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~  126 (320)
                      ..++....+..        ..+. +..+..+.+.+++|++.+.+
T Consensus       124 ~~~~~~~~~~~--------~~~~-~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         124 NEEEIKNKLGT--------DRHM-VKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             CHHHHHHHHTC--------STTE-EEEEGGGTCCHHHHHHHHHH
T ss_pred             hhHHHHHHhCC--------CCcE-EEEECCCCCCHHHHHHHHHh
Confidence            65544333321        1111 12344666778877766543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0018  Score=51.24  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|++|+|||||++.+.++.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDKR   27 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            48999999999999999876344

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.00098  Score=55.45  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +..|+|-|+.||||||+++.|. ..+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~-~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILK-QLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTG-GGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-HHH
Confidence            4569999999999999999999 554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0014  Score=57.54  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .|||.|++||||||+.+.|. ..+
T Consensus        82 iIGIaG~sgSGKSTla~~L~-~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQ-ALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHH-HHH
T ss_pred             EEEEeCCCCCCCcHHHHHHH-HHH
Confidence            48999999999999999987 554

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0025  Score=50.49  Aligned_cols=69  Identities=14%  Similarity=0.143  Sum_probs=45.1

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCChhHHH
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPPNVLQ   85 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~le   85 (320)
                      .+.+.|+||+++|..+  .-..++|.+++  |++.++...  ........+.+..  ++|.+|+.||+|+.+.....
T Consensus        51 ~l~i~D~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~  125 (177)
T d1kmqa_          51 ELALWDTAGLEDYDRLRPLSYPDTDVILM--CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTR  125 (177)
T ss_dssp             EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHH
T ss_pred             eeeccccCccchhcccchhhcccchhhhh--hcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHH
Confidence            4788899999999822  23556777877  999886321  1222233333333  46888888999998765443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0017  Score=51.05  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .+|+|+|+.|+|||||++.+.++.
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            368999999999999999876343

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.002  Score=58.64  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +|+|+|.+|+|||||+|.|. |.-
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~-G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLR-GIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHH-TCC
T ss_pred             EEEEECCCCCCHHHHHHHHh-CCC
Confidence            38999999999999999999 853

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.97  E-value=0.0015  Score=51.72  Aligned_cols=71  Identities=14%  Similarity=0.092  Sum_probs=44.2

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHH---HHcCCCcEEEEeCCCCCChhHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLA---LALSVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~---~~l~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      .+.+.|+||+++|.  .-.-...+|.+++  |+++++... ...++.+ .+.   ...++|++|+.||+|+.+....+..
T Consensus        61 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~--v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~  138 (176)
T d1fzqa_          61 KLNVWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEI  138 (176)
T ss_dssp             EEEEEECSSCGGGHHHHHHHHTTCSEEEE--EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHH
T ss_pred             eEeEeeccccccchhHHHHHhhccceeEE--eeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHH
Confidence            57788999999997  1222445666666  999886432 2333333 222   2234578888899999765544443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0021  Score=50.18  Aligned_cols=23  Identities=17%  Similarity=0.423  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +|+++|..|+|||||++.+.++.
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999887333

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.002  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|++|+|||||++.+. +..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~-~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFG-GVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-TC-
T ss_pred             EEEEECCCCcCHHHHHHHHh-CCc
Confidence            48999999999999999998 543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.94  E-value=0.0013  Score=55.50  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +.|.||.|+|||||.+.|+ +.+.
T Consensus        35 ilL~GpPGtGKT~la~~la-~~~~   57 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIF-EETQ   57 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHH-HHTT
T ss_pred             EEEECCCCCCHHHHHHHHH-HHhh
Confidence            7899999999999999999 6654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.002  Score=50.69  Aligned_cols=22  Identities=45%  Similarity=0.596  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++++|.+|+|||||++-+.++
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999877734

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0025  Score=50.00  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|.+|+|||||++.+.++.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~   28 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEKK   28 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48999999999999998776343

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0068  Score=54.91  Aligned_cols=61  Identities=8%  Similarity=-0.014  Sum_probs=38.2

Q ss_pred             ceEEEeCCCcchhh-------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138         15 AASVFETRIHERDD-------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      .+.++|+||....-       .-......|+.++  ++  +..+.....+-+..++..+.|+++|+||+|..
T Consensus       108 ~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~--~~--~~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         108 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII--IS--ATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD  175 (400)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE--EE--SSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred             eEEEEeCCCcccccccHHHHHHHhhhhcceEEEE--ec--CCCCCHHHHHHHHHHHHcCCCEEEEEeCcccc
Confidence            47899999975433       1122344444433  43  34455555555566677788999999999953

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0023  Score=50.82  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|++|+|||||++.+.++.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999998877454

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.90  E-value=0.0026  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.307  Sum_probs=19.3

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHh
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ++.+++++||+|+||||.+-=|+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35678999999999999986566

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.00053  Score=61.20  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             HHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138        288 ITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH  319 (320)
Q Consensus       288 l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v  319 (320)
                      +.++|..||.++......+|..  .|.|+|||
T Consensus        98 inliDtPGh~dF~~ev~~al~~--~D~allVV  127 (341)
T d1n0ua2          98 INLIDSPGHVDFSSEVTAALRV--TDGALVVV  127 (341)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHT--CSEEEEEE
T ss_pred             EEEEcCCCcHHHHHHHHHHHhh--cCceEEEE
Confidence            4678899999999999999977  89998887

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.002  Score=52.80  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |..|+|-|+.||||||+++.|.
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            6679999999999999999988

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0023  Score=50.42  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++|+|.+|+|||||++-+..+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999876634

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0025  Score=49.94  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|..|+|||||++.+.++.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999998887343

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0025  Score=50.57  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|..|+|||||++.+.++.
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999887343

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.88  E-value=0.0015  Score=52.12  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .-+++++|++|+|||||++.+.
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4568999999999999999997

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0024  Score=50.40  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|..|+|||||++.+.++.
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~~   29 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEKK   29 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48999999999999999876343

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0026  Score=49.89  Aligned_cols=24  Identities=21%  Similarity=0.526  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++|+|.+|+|||||++-+.++.
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            358999999999999998877444

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0022  Score=52.88  Aligned_cols=22  Identities=32%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |..|+|-|+.||||||+.+.|.
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHH
Confidence            6679999999999999999987

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0026  Score=50.29  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|++|+|||||++.+.++.
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~~   30 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTNK   30 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999997776354

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0044  Score=48.80  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=40.8

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch--hHHHHHHHHHHc--CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALAL--SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l--~i~~~v~lnk~Dl~~   80 (320)
                      .+-+.|+|||++|.  .-.....+|.+++  |++.+....-  ...-...+.+..  ++|++++.||+|+.+
T Consensus        55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  124 (174)
T d2bmea1          55 KLQIWDTAGQERFRSVTRSYYRGAAGALL--VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA  124 (174)
T ss_dssp             EEEEEEECCSGGGHHHHHTTSTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             eEEEEECCCchhhhhhHHHHhhhCCEEEE--EEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc
Confidence            46788999999998  1223567777777  8988864322  112122333433  357778889999853

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0024  Score=53.72  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..+.|.|||.+||||+||.++
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4558899999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.80  E-value=0.0021  Score=53.33  Aligned_cols=19  Identities=26%  Similarity=0.293  Sum_probs=18.0

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.|.||+|+||||++++|+
T Consensus        48 lll~Gp~G~GKTtla~~ia   66 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALA   66 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6899999999999999998

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.003  Score=49.97  Aligned_cols=23  Identities=39%  Similarity=0.660  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|..|+|||||++.+. +..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~-~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFA-GVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-CCC
T ss_pred             EEEEECCCCcCHHHHHHHHH-hCc
Confidence            48999999999999999988 543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.77  E-value=0.0025  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.++-|.|.||||||||.+.|.
T Consensus        24 g~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            6679999999999999999986

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0029  Score=51.09  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|+.|+|||||++.+.++.
T Consensus         8 KivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHhhCC
Confidence            48999999999999999777443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0032  Score=49.50  Aligned_cols=24  Identities=25%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|..|+|||||++-+.++..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~f   31 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQF   31 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            589999999999999988774543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0049  Score=48.69  Aligned_cols=65  Identities=15%  Similarity=0.080  Sum_probs=41.4

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHcC---CCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALALS---VPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l~---i~~~v~lnk~Dl~~~   81 (320)
                      .+.+.|+||+++|.  ...-...+|..++  |++.+++-. ....+.+.-++-..   +|+++|-||+|+.+.
T Consensus        54 ~~~i~d~~g~e~~~~~~~~~~~~~~~~i~--v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~  124 (175)
T d2f9la1          54 KAQIWDTAGQERYRRITSAYYRGAVGALL--VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL  124 (175)
T ss_dssp             EEEEEECSSGGGTTCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEecccCCcHHHHHHHHHHhhccCeEEE--EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccccc
Confidence            46788999999998  2223456677766  899886432 23334443333332   466677799998643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0077  Score=47.19  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             ceEEEeCCCcchhhccCC--CCccchhhhccceecCCCCchhHHHHH-----HHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIVGMTKEHL-----GLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~~~t~~~l-----~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|+||+++|..+..  ...+|.+++  |++.++.   .+-+++     .+....   .+|.++|.||+|+..
T Consensus        49 ~l~i~D~~g~e~~~~~~~~~~~~~d~~il--v~d~t~~---~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~  119 (168)
T d2gjsa1          49 SLMVYDIWEQDGGRWLPGHCMAMGDAYVI--VYSVTDK---GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR  119 (168)
T ss_dssp             EEEEEECC-------CHHHHHTSCSEEEE--EEETTCH---HHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG
T ss_pred             ceeeeecccccccceecccchhhhhhhce--ecccccc---ccccccccccchhhcccccccceEEEeecccchhh
Confidence            467789999999983221  345677777  9998863   222222     233332   346777779999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.69  E-value=0.0027  Score=51.52  Aligned_cols=20  Identities=40%  Similarity=0.491  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|+|-|+-||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999987

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0025  Score=52.24  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+||+|+.||||||..+.+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            48999999999999999987

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0034  Score=49.23  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|.+|+|||||++.+.++.
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999776344

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0034  Score=49.28  Aligned_cols=23  Identities=17%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|..|+|||||++-+.+|.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999998766354

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.68  E-value=0.0014  Score=56.78  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=15.6

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|||.|+|||||||+.+.|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999887

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0038  Score=49.04  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|+.|+|||||++.+.+|.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~~   30 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDGA   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48999999999999999766354

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0029  Score=52.20  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=23.0

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      +|..|+|-|+.||||||+++.|. -.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~-~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILY-KKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH-HHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHH-HHHH
Confidence            36779999999999999999998 4443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.0029  Score=52.96  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .+.|.||+|+||||++++|+ ..+
T Consensus        54 ~lll~GPpG~GKTt~a~~la-~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVA-QEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHT
T ss_pred             eEEEECCCCCCHHHHHHHHH-HHH
Confidence            37899999999999999999 544

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.59  E-value=0.0024  Score=50.39  Aligned_cols=22  Identities=41%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .-++.++|++|+|||||++.+.
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            3468999999999999999998

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.58  E-value=0.0031  Score=52.22  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -.+++++||+|+||||.+-=|+
T Consensus        11 p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3458999999999999886555

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.58  E-value=0.0048  Score=49.07  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=35.0

Q ss_pred             CCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138         66 SVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG  131 (320)
Q Consensus        66 ~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~  131 (320)
                      +.|.++|+||+|+.....   .++.+.+.+..    ..+. +..+..+.+.++++...+.+.+.+.
T Consensus       117 ~kp~ivv~NK~Dl~~~~~---~~~~~~~~~~~----~~~v-~~iSA~~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         117 ERPQIIVANKMDMPEAAE---NLEAFKEKLTD----DYPV-FPISAVTREGLRELLFEVANQLENT  174 (185)
T ss_dssp             TSCBCBEEECTTSTTHHH---HHHHHHHHCCS----CCCB-CCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             CCcchhhccccchHhHHH---HHHHHHHHhcc----CCcE-EEEECCCCCCHHHHHHHHHHhhhhC
Confidence            457899999999986532   22334433221    1111 1234567778888888888776543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0023  Score=50.48  Aligned_cols=63  Identities=21%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             eEEEeCCCcchhh-c-cCCCCccchhhhccceecCCCC-chhHHHHHHHH-HHcC--CCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDD-D-LPEASPADHSMLQSKVGANAGI-VGMTKEHLGLA-LALS--VPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~-~-~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~-~~l~--i~~~v~lnk~Dl~~   80 (320)
                      +.+.|+||+++|. + -.....+|.+++  |++.++.. .....++...+ +...  +|++++.||+|+..
T Consensus        56 l~i~Dt~G~e~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~  124 (171)
T d2ew1a1          56 LQIWDTAGQERFRSITQSYYRSANALIL--TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE  124 (171)
T ss_dssp             EEEEEECCSGGGHHHHGGGSTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEEEECCCchhhHHHHHHHHhccceEEE--eeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc
Confidence            6678999999998 2 223466777777  88877633 22333444433 3332  25566669999854

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0034  Score=49.36  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      -+++++|+.|+|||||++-+.++
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999887744

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0034  Score=50.07  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      .-+++|+|.+|+|||||++.+.++.
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3469999999999999998777444

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0039  Score=49.97  Aligned_cols=30  Identities=13%  Similarity=0.137  Sum_probs=24.3

Q ss_pred             ccccCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        194 RVESQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       194 ~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+..+...|+.+.|.||+|+|||||+--++
T Consensus        15 ll~GGi~~G~v~~i~G~~GsGKT~l~l~la   44 (242)
T d1n0wa_          15 LLQGGIETGSITEMFGEFRTGKTQICHTLA   44 (242)
T ss_dssp             HTTTSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             hhcCCCcCCEEEEEEeCCCCCHHHHHHHHH
Confidence            344455569999999999999999987665

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0034  Score=49.62  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +|+|+|..|+|||||++-+.++.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999998776344

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.49  E-value=0.0035  Score=52.51  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +..+.|.||.|+|||||++.++
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Confidence            3458899999999999999876

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0032  Score=52.06  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHhcCc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +.|.||+|+||||++++++ ..
T Consensus        36 lll~Gp~G~GKTtl~~~i~-~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALT-KE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHH-HH
T ss_pred             EEEECCCCCChHHHHHHHH-HH
Confidence            6799999999999999998 44

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0037  Score=51.63  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+++++||+|+||||.+-=|+
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999886666

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0047  Score=48.58  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|..|+|||||++.+.++.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999776343

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0044  Score=49.35  Aligned_cols=24  Identities=33%  Similarity=0.641  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|.+|+|||||++.+.+|..
T Consensus         4 KivliG~~~vGKTsli~r~~~~~f   27 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDCF   27 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            589999999999999986664653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0045  Score=49.46  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|.+|+|||||++.+.++.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            48999999999999998776454

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0051  Score=48.13  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++++|.+|+|||||++-+.+|.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999998877454

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.36  E-value=0.0042  Score=51.16  Aligned_cols=21  Identities=29%  Similarity=0.213  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..+.++||+|+||||.+-=|+
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999987776

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0028  Score=50.03  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=18.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      +++++|+.|+|||||++.+.++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988733

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.30  E-value=0.0081  Score=47.18  Aligned_cols=65  Identities=8%  Similarity=-0.030  Sum_probs=41.1

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHH-HH---HcCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGL-AL---ALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l-~~---~l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.+.|+||++++.  .-.-...+|.+++  |++++..... ...+.+.. ..   ....|++++.||+|+...
T Consensus        57 ~~~i~D~~g~~~~~~~~~~~~~~~~~ii~--v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          57 KFNVWDVGGQDKIRPLWRHYYTGTQGLIF--VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             EEEEEEESCCGGGHHHHGGGTTTCCEEEE--EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             eeEEecCCCcchhhhHHHhhhcccceEEE--EEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc
Confidence            46788999999988  2223556777766  9998863332 23333322 21   223477888899999654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.29  E-value=0.0038  Score=51.56  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=14.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -.+++++||+|+||||.+-=|+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999986555

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0044  Score=49.65  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=23.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhc-CcCCCCCce
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTH-GELDNGRGH  233 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~-G~l~~~~G~  233 (320)
                      ++.|+|.+|+|||||++-+.- -...|+-|.
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence            589999999999999988741 123577773

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0055  Score=48.70  Aligned_cols=24  Identities=33%  Similarity=0.678  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      -+++++|++|+|||||++-+.++.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999776344

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0028  Score=50.11  Aligned_cols=20  Identities=20%  Similarity=0.486  Sum_probs=9.2

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|+|+|..|+|||||++.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEEECCCCC----------
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            48999999999999998776

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.27  E-value=0.0038  Score=49.62  Aligned_cols=31  Identities=23%  Similarity=0.436  Sum_probs=25.0

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA  234 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i  234 (320)
                      -++.++|..|+|||||++-+. ....|+.|..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~-~~~~~t~~~~   33 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMK-IIHEAGTGIV   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH-HHHSCCCSEE
T ss_pred             eEEEEECCCCCCHHHHHHHHh-hCCCCCccEE
Confidence            368999999999999999887 5556666644

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.25  E-value=0.0049  Score=48.45  Aligned_cols=23  Identities=35%  Similarity=0.393  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +++|+|..|+|||||++.+.++.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999876344

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0054  Score=49.19  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|++|+|||||++.+..|..
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~f   28 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNKF   28 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            589999999999999977664553

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0088  Score=47.66  Aligned_cols=67  Identities=15%  Similarity=0.129  Sum_probs=44.7

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCChhHH
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPPNVL   84 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~l   84 (320)
                      +.+.|+||+++|.  .-.-...+|.+++  |++.++...  .....+..+.+..  .+|.++|.||+|+.+....
T Consensus        59 l~i~D~~g~e~~~~~~~~~~~~a~~~il--v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~  131 (185)
T d2atxa1          59 LGLYDTAGQEDYDRLRPLSYPMTDVFLI--CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKT  131 (185)
T ss_dssp             EEEECCCCSSSSTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHH
T ss_pred             eecccccccchhhhhhhhcccccceeee--ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhh
Confidence            6688999999998  2333566788888  999887331  1222344555444  4577888899999865443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.0044  Score=51.40  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=20.6

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      +.+.||+|+||||+.++|+ ..+..
T Consensus        38 ~L~~GPpGtGKT~lA~~la-~~~~~   61 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIA-SELQT   61 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHH-HHHTC
T ss_pred             EEEECCCCCcHHHHHHHHH-hccCC
Confidence            5799999999999999999 55543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0052  Score=53.13  Aligned_cols=20  Identities=20%  Similarity=0.059  Sum_probs=17.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|||-|+.|||||||.+.|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            48999999999999998775

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.92  E-value=0.007  Score=48.42  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.-+.|.|+||+|||||.-.+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHH
Confidence            6668999999999999886654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.89  E-value=0.0061  Score=50.60  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.+.||.|+||||+.++++ +.+
T Consensus        38 ~Ll~GPpG~GKTtla~~la-~~~   59 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIA-HEL   59 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HHH
T ss_pred             EEEECCCCCCHHHHHHHHH-HHh
Confidence            5799999999999999999 554

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.85  E-value=0.0071  Score=48.40  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.-+.|.|+||+|||||.-.+.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHH
Confidence            6668999999999999986655

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.0069  Score=49.79  Aligned_cols=19  Identities=26%  Similarity=0.379  Sum_probs=17.6

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+.||+|+||||++++++
T Consensus        39 ~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHH
Confidence            5789999999999999887

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.77  E-value=0.0085  Score=47.04  Aligned_cols=24  Identities=38%  Similarity=0.524  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHG  225 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G  225 (320)
                      |.++++-|+=|||||||.|.++.+
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            677999999999999999999843

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.01  Score=46.48  Aligned_cols=64  Identities=11%  Similarity=-0.008  Sum_probs=35.5

Q ss_pred             ceEEEeCCCcchhh-cc-CCCCccchhhhccceecCCCCch-hHHHH-HHHHHHcCC--CcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD-DL-PEASPADHSMLQSKVGANAGIVG-MTKEH-LGLALALSV--PVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~~-~~~~~~d~~~l~~vv~a~~g~~~-~t~~~-l~l~~~l~i--~~~v~lnk~Dl~~   80 (320)
                      .+.|.|+|||++|. +. .-...+|.+++  |++.+....- ..... ..+.+...-  |++++.||+|+..
T Consensus        57 ~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~  126 (170)
T d2g6ba1          57 KLQMWDTAGQERFRSVTHAYYRDAHALLL--LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH  126 (170)
T ss_dssp             EEEEEECCCC--------CCGGGCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred             EEEEEECCCchhhHHHHHHhhcCCceeEE--EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh
Confidence            46788999999998 22 22456777777  8888753321 11222 234455443  5666669999864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.64  E-value=0.0075  Score=52.57  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.++||+|+|||+|.|.|+ ..+
T Consensus        52 iLl~GPpG~GKT~lAkalA-~~~   73 (309)
T d1ofha_          52 ILMIGPTGVGKTEIARRLA-KLA   73 (309)
T ss_dssp             EEEECCTTSSHHHHHHHHH-HHH
T ss_pred             EEEECCCCCCHHHHHHHHh-hcc
Confidence            6799999999999999999 554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.63  E-value=0.0084  Score=49.95  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      .+.|.||.|+||||+++.|+ ..++
T Consensus        45 ~lll~GppGtGKT~l~~~l~-~~l~   68 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLW-ELYK   68 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHH-HHHT
T ss_pred             ceEEECCCCCCHHHHHHHHH-HHHh
Confidence            37899999999999999998 5543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.62  E-value=0.01  Score=47.00  Aligned_cols=67  Identities=19%  Similarity=0.178  Sum_probs=40.3

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH------cCCCcEEEEeCCCCCChhH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA------LSVPVFVVVTKIDMCPPNV   83 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~------l~i~~~v~lnk~Dl~~~~~   83 (320)
                      .+.+.|+||++++.  .-.-...+|.+++  +++.++... .-..+.+ .+.+.      ..+|.++|.||+|+.....
T Consensus        52 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~--~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~  128 (184)
T d1vg8a_          52 TMQIWDTAGQERFQSLGVAFYRGADCCVL--VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV  128 (184)
T ss_dssp             EEEEEEECSSGGGSCSCCGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS
T ss_pred             EEEeeecCCcccccccccccccCccEEEE--eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccch
Confidence            46678999999988  2223445666666  888875221 1111111 22222      3468889999999865443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.52  E-value=0.0086  Score=50.44  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.+.||.|+|||+|.+.|+ ...
T Consensus        43 vLL~GppGtGKT~la~alA-~~~   64 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIA-EES   64 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHH-HHH
T ss_pred             EEEECcCCCCHHHHHHHHh-hcc
Confidence            6899999999999999999 543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0089  Score=49.48  Aligned_cols=20  Identities=45%  Similarity=0.793  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|+|=|+-||||||+++.|.
T Consensus         4 ~IviEG~~GsGKST~~~~L~   23 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLT   23 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999998

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.064  Score=41.55  Aligned_cols=81  Identities=15%  Similarity=0.241  Sum_probs=60.3

Q ss_pred             ceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHH
Q psy15138         44 KVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKK  123 (320)
Q Consensus        44 vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q  123 (320)
                      +.++..+...+..+.+........+.++++||+|+.........++.+.+.+.... ...+ -+..++.+..+.++|++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~-~~~~-~i~vSA~~g~Gid~L~~~  182 (188)
T d1puia_         105 LMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN-GDVQ-VETFSSLKKQGVDKLRQK  182 (188)
T ss_dssp             EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-SCEE-EEECBTTTTBSHHHHHHH
T ss_pred             eecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhC-CCCc-EEEEeCCCCCCHHHHHHH
Confidence            67777888888888888888888899999999999999888888888877665321 1111 122456777888888877


Q ss_pred             HHH
Q psy15138        124 IKS  126 (320)
Q Consensus       124 ~~~  126 (320)
                      +..
T Consensus       183 i~~  185 (188)
T d1puia_         183 LDT  185 (188)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.45  E-value=0.01  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHh
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|.-+.|.|+||+|||||.-.+.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            36778999999999999885443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.0078  Score=50.06  Aligned_cols=20  Identities=25%  Similarity=0.233  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHhc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTH  224 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~  224 (320)
                      +.|.||.|+||||+++.++.
T Consensus        36 lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999983

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.0094  Score=48.91  Aligned_cols=19  Identities=21%  Similarity=0.350  Sum_probs=17.8

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+.||.|+||||++++|+
T Consensus        38 lLl~Gp~G~GKttl~~~la   56 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALA   56 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHH
Confidence            5799999999999999998

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.37  E-value=0.011  Score=49.12  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHh
Q psy15138        204 RVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|||.|+-||||||..+.|.
T Consensus         3 iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999996

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.36  E-value=0.01  Score=51.22  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +++++|.-.||||||++.|. |.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLl-G~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIV-GRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHH-TSC
T ss_pred             eEEEEeCCCCCHHHHHHHHh-CCC
Confidence            47999999999999999999 865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.35  E-value=0.01  Score=50.94  Aligned_cols=22  Identities=45%  Similarity=0.637  Sum_probs=20.5

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      ++++|.-.||||||++.|. |.-
T Consensus        29 ivvvG~~SsGKSsliNaLl-g~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFV-GRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHH-TSC
T ss_pred             EEEEcCCCCCHHHHHHHHh-CCC
Confidence            7999999999999999999 864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.0099  Score=50.43  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.+.||+|+|||++.+.|+ ..+
T Consensus        48 iLL~GppGtGKT~la~~iA-~~~   69 (256)
T d1lv7a_          48 VLMVGPPGTGKTLLAKAIA-GEA   69 (256)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HHH
T ss_pred             EEeeCCCCCCccHHHHHHH-HHc
Confidence            6899999999999999999 544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.011  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHh
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      +|++.+|+|++|+|||||+..|+
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~   64 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIA   64 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHH
Confidence            39999999999999999999988

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.26  E-value=0.011  Score=49.94  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.+.||.|+|||+|.+.|+ ..+
T Consensus        45 iLl~GppGtGKT~la~aia-~~~   66 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVA-GEA   66 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHH-HHT
T ss_pred             EEEecCCCCChhHHHHHHH-HHc
Confidence            6899999999999999999 554

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.066  Score=41.27  Aligned_cols=63  Identities=13%  Similarity=0.035  Sum_probs=40.6

Q ss_pred             eEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCch--hHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      +.+.|+||.++|..  ..-...+|.+++  |.+.+++..-  ..+-+-.+.+..   .+|++++.||+|+..
T Consensus        54 l~i~d~~g~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~  123 (167)
T d1xtqa1          54 LQLVDTAGQDEYSIFPQTYSIDINGYIL--VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM  123 (167)
T ss_dssp             EEEEECCCCCTTCCCCGGGTSSCCEEEE--EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG
T ss_pred             eeecccccccccccccchhhhhhhhhhh--hcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc
Confidence            56789999999982  233556777777  9998873321  111112344443   357788889999853

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.012  Score=46.62  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCc--CCCCCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGE--LDNGRG  232 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G  232 (320)
                      ++.++|..|+|||||++-+..+.  ..|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            58999999999999999886332  234545

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.006  Score=47.54  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             ceEEEeCCCcchhhccCC--CCccchhhhccceecCCCCc-hhHHHHH-HHHH-HcCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL-ALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~-~l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.+.|+||+++|..+..  ...+|..++  |++.++... ......+ .+-+ .-.+|.++|.||+|+.+.
T Consensus        52 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~  121 (164)
T d1z2aa1          52 RLMLWDTAGQEEFDAITKAYYRGAQACVL--VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD  121 (164)
T ss_dssp             EEEEECCTTGGGTTCCCHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred             eeeeeccCCccchhhhhhhhhccCceEEE--EEeccchhhhhhcccccccccccCCCceEEEeeccCCcccc
Confidence            367789999999983222  345666666  899886332 1111112 2222 345688888899998643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.011  Score=48.32  Aligned_cols=30  Identities=20%  Similarity=0.142  Sum_probs=24.1

Q ss_pred             ccccCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        194 RVESQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       194 ~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+..+-..|..+.|.||+|||||||.--++
T Consensus        26 ll~GGi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          26 LLGGGVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             HHTSSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             hhCCCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            344445569999999999999999997665

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.012  Score=50.56  Aligned_cols=23  Identities=43%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .|+|+||-++||||||+.|. |..
T Consensus        34 vvsi~G~~~sGKS~llN~l~-~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLA-GKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHT-TCS
T ss_pred             EEEEECCCCCCHHHHHHHHc-CCC
Confidence            48999999999999999999 654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.0077  Score=47.87  Aligned_cols=61  Identities=11%  Similarity=-0.028  Sum_probs=37.5

Q ss_pred             ceEEEeCCCcchhh-ccC-CCCccchhhhccceecCCCCchhHHHHHHHHH-----HcC---CCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD-DLP-EASPADHSMLQSKVGANAGIVGMTKEHLGLAL-----ALS---VPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~~~-~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~-----~l~---i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|+|||++|. +.. -..++|.+++  |++.+.   +.+.+++.-..     ...   .|++||.||.|+..
T Consensus        65 ~~~i~dt~G~e~~~~~~~~~~~~~~~~i~--v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~  135 (186)
T d2f7sa1          65 HLQLWDTAGQERFRSLTTAFFRDAMGFLL--MFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD  135 (186)
T ss_dssp             EEEEEEEESHHHHHHHHHHHHTTCCEEEE--EEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             EeccccCCcchhhHHHHHHHHhcCCEEEE--EEeccc---cccceeeeeccchhhhhccCCCceEEEEeeeccchh
Confidence            47788999999998 211 1345677777  999876   33444432111     111   23456669999853

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.91  E-value=0.014  Score=50.67  Aligned_cols=23  Identities=35%  Similarity=0.417  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .|||+|..-+|||||++.|+ |.-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt-~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAAT-LVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHH-C--
T ss_pred             cEeEECCCCCCHHHHHHHHH-CCC
Confidence            48999999999999999998 753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.02  Score=47.07  Aligned_cols=31  Identities=19%  Similarity=0.108  Sum_probs=25.4

Q ss_pred             eccccCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        193 KRVESQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       193 ~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..+..+...|..+.|.||+|+|||||.-.++
T Consensus        28 ~~lgGGip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             HHTTSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             HhhcCCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            3455666679999999999999999987665

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.84  E-value=0.012  Score=53.29  Aligned_cols=26  Identities=35%  Similarity=0.285  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      .-.+.|.||.||||||++..+. ..++
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l-~~~~  183 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGL-QELN  183 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHH-HHHC
T ss_pred             hceEEEEcCCCCCccHHHHHHh-hhhc
Confidence            4458899999999999999888 5443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.72  E-value=0.016  Score=47.69  Aligned_cols=30  Identities=17%  Similarity=0.235  Sum_probs=24.7

Q ss_pred             ccccCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        194 RVESQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       194 ~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+..+...|..+.|.||+|+|||||+--++
T Consensus        18 ~l~GGi~~gsl~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          18 MCGGGFFKDSIILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             HTTSSEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred             hhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            455555669999999999999999997666

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.69  E-value=0.021  Score=44.28  Aligned_cols=76  Identities=16%  Similarity=0.035  Sum_probs=44.2

Q ss_pred             eEEEeCCCcchhhccC--CCCccchhhhccceecCCCCchhHHH--HHHHHHHcCC--CcEEEEeCCCCCChhHHHHHHH
Q psy15138         16 ASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIVGMTKE--HLGLALALSV--PVFVVVTKIDMCPPNVLQDTLK   89 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~~~t~~--~l~l~~~l~i--~~~v~lnk~Dl~~~~~le~~l~   89 (320)
                      +.+.|+||+++|..+.  -..++|.+++  |++.++.-.-...+  +..+.....-  |.+++.||.|+.......+...
T Consensus        53 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~  130 (166)
T d1g16a_          53 LQIWDTAGQERFRTITTAYYRGAMGIIL--VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGE  130 (166)
T ss_dssp             EEEECCTTGGGTSCCCHHHHTTEEEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHH
T ss_pred             EEEEECCCchhhHHHHHHHHhcCCEEEE--EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHH
Confidence            5578999999998222  2456677777  99999743221111  2233333332  5667779999875544444444


Q ss_pred             HHHH
Q psy15138         90 LLVR   93 (320)
Q Consensus        90 ~~~~   93 (320)
                      ++..
T Consensus       131 ~~~~  134 (166)
T d1g16a_         131 ALAK  134 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.66  E-value=0.026  Score=44.59  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      .+.+.|+||+++|.  .-.-...+|.+++  |.+.++...  ..........+..  ++|.++|-||+|+...
T Consensus        51 ~~~i~D~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~  121 (179)
T d1m7ba_          51 ELSLWDTSGSPYYDNVRPLSYPDSDAVLI--CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD  121 (179)
T ss_dssp             EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred             eeccccccccccccccccchhhhhhhhhe--eeecccCCCHHHHHHHHHHHHhccCCcceEEEEEeccccccc
Confidence            46788999999998  2234667788888  999987432  1111123333333  4567777799998643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.59  E-value=0.017  Score=47.19  Aligned_cols=30  Identities=10%  Similarity=0.042  Sum_probs=24.3

Q ss_pred             ccccCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        194 RVESQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       194 ~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+..+-..|+.+.|.|++|+|||||+--++
T Consensus        26 ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          26 VLGGGLESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             HTTSSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             hcCCCccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            455555569999999999999999986665

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.59  E-value=0.0088  Score=52.42  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      +.|+||.|+|||||+|.+. +++++
T Consensus        31 vLl~G~pG~GKT~lar~~~-~iLp~   54 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALA-ALLPE   54 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHH-HHSCC
T ss_pred             EEEECCCCccHHHHHHHHH-HhCCC
Confidence            7899999999999999999 88764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.59  E-value=0.017  Score=48.85  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHhcCc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +.+.||+|+|||+|++.++ ..
T Consensus        41 iLL~GppGtGKT~l~~ala-~~   61 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVA-NE   61 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHH-HH
T ss_pred             eEEecCCCCCchHHHHHHH-HH
Confidence            6899999999999999999 54

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.46  E-value=0.019  Score=46.59  Aligned_cols=27  Identities=15%  Similarity=0.031  Sum_probs=21.6

Q ss_pred             cccCCccCcEEEEEcCCCChHHHHHHH
Q psy15138        195 VESQDFLEIRVAVVGNVDAGKSTLLGV  221 (320)
Q Consensus       195 l~~~~~~g~~v~ivGpnGsGKSTLl~~  221 (320)
                      +..+-..|+.+.|.|++|+|||||+--
T Consensus        19 l~GGi~~G~~~~I~G~~G~GKT~la~~   45 (242)
T d1tf7a1          19 SHGGLPIGRSTLVSGTSGTGKTLFSIQ   45 (242)
T ss_dssp             TTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred             hcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence            444444599999999999999999853

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.025  Score=45.02  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=42.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH--cCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA--LSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~--l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.+.|+||+++|.  .-.....+|.+++  |.+.++...  ....-++.....  -++|.+++.||+|+...
T Consensus        52 ~l~i~D~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          52 TLGLFDTAGQEDYDRLRPLSYPQTDVFLV--CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD  122 (191)
T ss_dssp             EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGC
T ss_pred             eeeccccccchhhhhhhhhcccccceeec--ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccccccc
Confidence            37788999999998  2222457788888  999886321  121112333333  24577788899998644

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.41  E-value=0.013  Score=49.11  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=17.0

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.|.||.|+||||+++.++
T Consensus        49 l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHH
Confidence            4567999999999999998

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.35  E-value=0.02  Score=47.21  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=23.0

Q ss_pred             ccccCCccCcEEEEEcCCCChHHHHHHHH
Q psy15138        194 RVESQDFLEIRVAVVGNVDAGKSTLLGVL  222 (320)
Q Consensus       194 ~l~~~~~~g~~v~ivGpnGsGKSTLl~~l  222 (320)
                      .+..+-..|..+.|.||+|||||||.--+
T Consensus        28 ll~GGlp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          28 LLGGGIETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             HHTSSEESSEEEEEEESTTSSHHHHHHHH
T ss_pred             hhcCCccCCEEEEEEcCCCCCHHHHHHHH
Confidence            34445556899999999999999998644

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.34  E-value=0.017  Score=49.03  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.|.||+|+|||+|++.++ +.+
T Consensus        44 iLL~Gp~GtGKT~l~~ala-~~~   65 (265)
T d1r7ra3          44 VLFYGPPGCGKTLLAKAIA-NEC   65 (265)
T ss_dssp             EEEBCCTTSSHHHHHHHHH-HHT
T ss_pred             EEEECCCCCcchhHHHHHH-HHh
Confidence            7899999999999999999 654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.30  E-value=0.015  Score=53.27  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      ..+.++||+|+|||-|.+.|+ +.+.
T Consensus        50 sNILliGPTGvGKTlLAr~LA-k~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLA-KLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH-HHTT
T ss_pred             ccEEEECCCCCCHHHHHHHHH-HHhC
Confidence            347999999999999999999 7664

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.24  E-value=0.022  Score=49.11  Aligned_cols=24  Identities=29%  Similarity=0.560  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGE  226 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~  226 (320)
                      +-++||||...+|||||++.|+ +.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT-~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAIT-KS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHH-HS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-CC
Confidence            4569999999999999999998 54

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.10  E-value=0.025  Score=47.65  Aligned_cols=25  Identities=20%  Similarity=0.088  Sum_probs=21.4

Q ss_pred             CccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        199 DFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       199 ~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -..|+.+.|.|++|+|||||+.-|+
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3458999999999999999987666

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.10  E-value=0.036  Score=48.69  Aligned_cols=28  Identities=29%  Similarity=0.318  Sum_probs=23.2

Q ss_pred             EEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138        204 RVAVVGNVDAGKSTLLGVLTHGELDNGRG  232 (320)
Q Consensus       204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G  232 (320)
                      +|.|=|+-|+||||+++.|. ..+....+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~-~~l~~~~~   35 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMA-SAASGGSP   35 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SGGGCSSC
T ss_pred             EEEEECCccCCHHHHHHHHH-HHhccCCC
Confidence            58899999999999999999 66655443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.047  Score=42.51  Aligned_cols=65  Identities=14%  Similarity=0.145  Sum_probs=42.9

Q ss_pred             ceEEEeCCCcchhh-c-cCCCCccchhhhccceecCCCCc--hhHHHHHHHHH-HcCCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD-D-LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLAL-ALSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~-~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~-~l~i~~~v~lnk~Dl~~~   81 (320)
                      .+.+.|+||.++|. + -.-..++|.+++  |.+.++...  ....-+-.+.+ .-.+|.++|.||+|+...
T Consensus        53 ~l~i~D~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          53 KFNVWDTAGQEKFGGLRDGYYIQAQCAII--MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR  122 (170)
T ss_dssp             EEEEEECTTHHHHSSCGGGGTTTCCEEEE--EEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCS
T ss_pred             cccccccccccccceecchhcccccchhh--ccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhh
Confidence            47788999999998 2 223556777777  999886432  22222223333 336788999999999754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.042  Score=42.85  Aligned_cols=63  Identities=13%  Similarity=0.063  Sum_probs=38.6

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCC
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~   79 (320)
                      .+.+.|++|++.|..+  .....+|..++  |.+.++... ....+.+.-++..   ++|++||.||+|+.
T Consensus        53 ~~~i~d~~g~~~~~~~~~~~~~~~d~~il--v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~  121 (173)
T d2a5ja1          53 KLQIWDTAGQESFRSITRSYYRGAAGALL--VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE  121 (173)
T ss_dssp             EEEEECCTTGGGTSCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEeecccCccchhhHHHHHhhccCEEEE--EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchh
Confidence            4778899999999822  22445677777  888876321 2222233333333   34566777999974

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.017  Score=44.69  Aligned_cols=64  Identities=13%  Similarity=0.059  Sum_probs=39.2

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHH-H--cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLAL-A--LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~-~--l~i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|+||+++|..  -.-...+|..++  |.+.++... ...++.+...+ .  -.+|.++|-||+|+.+
T Consensus        50 ~~~i~d~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~  119 (164)
T d1yzqa1          50 RLQLWDTAGQERFRSLIPSYIRDSAAAVV--VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD  119 (164)
T ss_dssp             EEEEEEECCSGGGGGGHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred             eeeecccCCcchhccchHHHhhccceEEE--eeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh
Confidence            467889999999981  112446677777  888886442 12222332222 2  2346667779999863

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.028  Score=43.51  Aligned_cols=63  Identities=13%  Similarity=0.024  Sum_probs=36.7

Q ss_pred             ceEEEeCCCcchhh-c-cCCCCccchhhhccceecCCCCc-hhHHHHHHHHH-HcCC--CcEEEEeCCCCC
Q psy15138         15 AASVFETRIHERDD-D-LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLAL-ALSV--PVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~-~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~-~l~i--~~~v~lnk~Dl~   79 (320)
                      .+.+.|+||+++|. + -.-...+|.+++  |++.++... ......+..++ ...-  |.+++-||.|+.
T Consensus        54 ~l~i~D~~g~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~  122 (166)
T d1z0fa1          54 KLQIWDTAGQERFRAVTRSYYRGAAGALM--VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE  122 (166)
T ss_dssp             EEEEEECTTGGGTCHHHHHHHHTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEeccCCchhHHHHHHHHhcCCcEEEE--EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch
Confidence            46778999999997 1 122345677777  888876321 11122232233 3332  345555999984

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.03  Score=48.73  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.++||+|+|||.|.+.|+ -.+
T Consensus        55 ~lf~Gp~GvGKT~lak~la-~~l   76 (315)
T d1r6bx3          55 FLFAGPTGVGKTEVTVQLS-KAL   76 (315)
T ss_dssp             EEEECSTTSSHHHHHHHHH-HHH
T ss_pred             EEEECCCcchhHHHHHHHH-hhc
Confidence            6899999999999999999 444

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.50  E-value=0.12  Score=43.35  Aligned_cols=76  Identities=11%  Similarity=0.096  Sum_probs=44.7

Q ss_pred             ceEEEeCCCcchh-------h----ccCCCCccchhhhccceecCCC-CchhHHHHH-HHHHHcC--C--CcEEEEeCCC
Q psy15138         15 AASVFETRIHERD-------D----DLPEASPADHSMLQSKVGANAG-IVGMTKEHL-GLALALS--V--PVFVVVTKID   77 (320)
Q Consensus        15 ~~~~~d~pgh~~~-------~----~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l-~l~~~l~--i--~~~v~lnk~D   77 (320)
                      .+.|||+||-.+-       .    .......+|..++  |+.++.+ .....+.-+ .+...+|  +  +++||+||.|
T Consensus        81 ~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~--v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D  158 (257)
T d1h65a_          81 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLY--VDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ  158 (257)
T ss_dssp             EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEE--EEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred             EEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEE--EEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcc
Confidence            3889999995321       1    2233566777766  8888765 334333333 3333333  2  5789999999


Q ss_pred             CCChh--HHHHHHHHHH
Q psy15138         78 MCPPN--VLQDTLKLLV   92 (320)
Q Consensus        78 l~~~~--~le~~l~~~~   92 (320)
                      ...++  .+++++.+..
T Consensus       159 ~~~~~~~~~e~~~~~~~  175 (257)
T d1h65a_         159 FSPPDGLPYDEFFSKRS  175 (257)
T ss_dssp             CCCGGGCCHHHHHHHHH
T ss_pred             cCCcCCCcHHHHHHhhh
Confidence            87543  4555544433

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.43  E-value=0.035  Score=47.20  Aligned_cols=21  Identities=43%  Similarity=0.672  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      -++||||-.-+|||||++.|+
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt   23 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALT   23 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999998

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.029  Score=46.25  Aligned_cols=19  Identities=37%  Similarity=0.504  Sum_probs=17.5

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.|.|.=|||||||++-+.
T Consensus         6 ~iitGFLGaGKTTll~~lL   24 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHIL   24 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHH
T ss_pred             EEEeeCCCCCHHHHHHHHH
Confidence            6899999999999998887

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.075  Score=41.44  Aligned_cols=107  Identities=14%  Similarity=-0.022  Sum_probs=54.2

Q ss_pred             ceEEEeCCCcchhh-c-cCCCCccchhhhccceecCCCCc-hhHHHHHH-HHHHc-C--CCcEEEEeCCCCCChhHHHHH
Q psy15138         15 AASVFETRIHERDD-D-LPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LALAL-S--VPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~-~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~l-~--i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      .+.+.|+||+++|. + -.-...+|.+++  |++.++... ......+. +.+.. .  .|++++.||.|......-...
T Consensus        57 ~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~  134 (177)
T d1x3sa1          57 KLAIWDTAGQERFRTLTPSYYRGAQGVIL--VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNE  134 (177)
T ss_dssp             EEEEEEECSSGGGCCSHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHH
T ss_pred             EEEEEECCCchhhHHHHHHHHhcCCEEEE--EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHH
Confidence            47788999999998 1 112445666766  888876322 11222222 22211 1  245566799998643322222


Q ss_pred             HHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHc
Q psy15138         88 LKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDN  130 (320)
Q Consensus        88 l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~  130 (320)
                      ..++..-   ..+   ++ ...++.+.++.+++...+.+++.+
T Consensus       135 ~~~~~~~---~~~---~~-~e~Sa~tg~gv~e~f~~l~~~l~~  170 (177)
T d1x3sa1         135 GLKFARK---HSM---LF-IEASAKTCDGVQCAFEELVEKIIQ  170 (177)
T ss_dssp             HHHHHHH---TTC---EE-EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHH---CCC---EE-EEEeCCCCCCHHHHHHHHHHHHcc
Confidence            2222221   112   11 112345666777776666555443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.057  Score=42.42  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=40.9

Q ss_pred             eEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         16 ASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        16 ~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      +.+.|.+|+++|..  -.-...+|.+++  |++.++...  ..........+..  ++|++||.||+|+...
T Consensus        55 ~~~~d~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~  124 (183)
T d1mh1a_          55 LGLWDTAGQEDYDRLRPLSYPQTDVSLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD  124 (183)
T ss_dssp             EEEECCCCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred             EEeecccccccchhhhhhcccccceeee--eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhh
Confidence            56789999999982  222456777777  999886321  1111123333322  4588888899998654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.10  E-value=0.032  Score=48.94  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      -+|+|=|+-||||||+++.|. ..+
T Consensus         5 lrI~IEG~iGsGKTTl~~~La-~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLV-ALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHT-C--
T ss_pred             eEEEEECCcCCCHHHHHHHHH-HHh
Confidence            358999999999999999998 544

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.021  Score=44.74  Aligned_cols=63  Identities=16%  Similarity=0.115  Sum_probs=39.1

Q ss_pred             eEEEeCCCcchhhccC--CCCccchhhhccceecCCCCc--hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      +-+.|+||+++|..+.  -...+|.+++  |.+.++...  ....-.-.+.+..   .+|.++|.||.|+..
T Consensus        56 l~~~d~~g~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          56 LDILDTAGQEEFGAMREQYMRAGHGFLL--VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES  125 (173)
T ss_dssp             EEEEECCCTTTTSCCHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred             eeccccccccccccccchhhccceeeee--ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh
Confidence            5668999999998221  1345677777  888886432  1222222344433   447778889999853

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.071  Score=41.43  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=38.1

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHH------HcCCCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL------ALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~------~l~i~~~v~lnk~Dl~~   80 (320)
                      +-+.|+||..++.  .-.....+|.+++  +.+.+.... ...++.+ .+.+      ..++|.++|.||.|+..
T Consensus        57 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~--~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~  129 (174)
T d1wmsa_          57 MQIWDTAGQERFRSLRTPFYRGSDCCLL--TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  129 (174)
T ss_dssp             EEEEECCCCGGGHHHHGGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             EeeecccCcceehhhhhhhhhccceEEE--EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh
Confidence            4577999998887  3333566677777  888775321 1111111 1111      23467888889999864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.94  E-value=0.034  Score=43.23  Aligned_cols=64  Identities=11%  Similarity=-0.018  Sum_probs=35.6

Q ss_pred             ceEEEeCCCcchhh-ccC-CCCccchhhhccceecCCCCchhHHH-HH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD-DLP-EASPADHSMLQSKVGANAGIVGMTKE-HL-GLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~~~-~~~~~d~~~l~~vv~a~~g~~~~t~~-~l-~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|+||+++|. +.. -...+|.+++  |.+.++...-..-. -+ .+.+.   -++|.++|.||.|+..
T Consensus        53 ~l~i~d~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~  123 (168)
T d1u8za_          53 QIDILDTAGQEDYAAIRDNYFRSGEGFLC--VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  123 (168)
T ss_dssp             EEEEEECCC---CHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred             cccccccccccchhhhhhhcccccceeEE--EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc
Confidence            36678999999997 211 1234566666  88888733211111 11 34443   2457788889999853

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.034  Score=49.95  Aligned_cols=36  Identities=28%  Similarity=0.234  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      ...+.|+|++|||||++++.|....+..+.+.+-++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            345899999999999999755424444444444443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.84  E-value=0.046  Score=42.50  Aligned_cols=64  Identities=17%  Similarity=0.187  Sum_probs=39.3

Q ss_pred             eEEEeCCCcchhhccCC--CCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCCh
Q psy15138         16 ASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPP   81 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~   81 (320)
                      +-+.|+||+++|..+..  ...+|.+++  |++.++.-.  ....-.-.+.+.   ..+|.+++.||+|+...
T Consensus        54 ~~i~d~~g~~~~~~~~~~~~~~~~~~ll--v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~  124 (169)
T d1x1ra1          54 LDVLDTAGQEEFSAMREQYMRTGDGFLI--VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL  124 (169)
T ss_dssp             EEEEECCSCGGGCSSHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred             ccccccccccccccchhhhhhhccEEEE--ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhh
Confidence            66889999999983221  235677777  998886221  111111123333   34577888899998643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.045  Score=45.82  Aligned_cols=23  Identities=35%  Similarity=0.166  Sum_probs=19.6

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHh
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .|..+.|.|++|+|||||+--|+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHH
Confidence            37889999999999999986554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.60  E-value=0.049  Score=46.44  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |+|++|+|++|+|||||+..|+
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999987776

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.45  E-value=0.046  Score=47.94  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      .+|+|=|+-||||||+++.|. -.+.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~-~~l~   30 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFL-HHFA   30 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHH-HTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HHHh
Confidence            468999999999999999998 4443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.44  E-value=0.094  Score=40.40  Aligned_cols=108  Identities=8%  Similarity=-0.094  Sum_probs=51.2

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHH---HHH-HHHHHcCCCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTK---EHL-GLALALSVPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~---~~l-~l~~~l~i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.+.|.+|++.+.  .......+|.+++  +++.++-... ..+   ++. ........|++++.||+|+......++
T Consensus        59 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~--v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  136 (177)
T d1zj6a1          59 TRFLMWDIGGQESLRSSWNTYYTNTEFVIV--VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE  136 (177)
T ss_dssp             EEEEEEECCC----CGGGHHHHTTCCEEEE--EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             eEEEEeccccccccccchhhhhccceeeee--ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHH
Confidence            347778999998887  1111233444545  7777653322 111   111 112223447888889999976555444


Q ss_pred             HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~  127 (320)
                      ..+........    .....+. .+..+.+..+++-+.+..+
T Consensus       137 i~~~~~~~~~~----~~~~~~~~~Sa~tg~Gi~e~~~~L~~~  174 (177)
T d1zj6a1         137 ISQFLKLTSIK----DHQWHIQACCALTGEGLCQGLEWMMSR  174 (177)
T ss_dssp             HHHHHTGGGCC----SSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhH----hcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            43333221111    1111122 3457777777655554433

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.028  Score=43.76  Aligned_cols=65  Identities=11%  Similarity=0.076  Sum_probs=35.1

Q ss_pred             ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc---CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL---SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~   81 (320)
                      .+-+.|+||+++|..+  .-...+|..++  |.+.+....  ....-.-.+.+..   ..|.+++.||+|+...
T Consensus        54 ~~~~~d~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~  125 (171)
T d2erya1          54 RLDILDTAGQEEFGAMREQYMRTGEGFLL--VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ  125 (171)
T ss_dssp             EEEEEECC----CCHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTS
T ss_pred             ccccccccccccccccccccccccceEEE--eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhh
Confidence            3677899999999811  22345677777  898886321  1111111233332   2466777899998643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.078  Score=40.82  Aligned_cols=105  Identities=14%  Similarity=0.049  Sum_probs=55.5

Q ss_pred             eEEEeCCCcchhh-ccC-CCCccchhhhccceecCCCCc-hhHHHHH-HHHHHc---CCCcEEEEeCCCCCChhHHHHHH
Q psy15138         16 ASVFETRIHERDD-DLP-EASPADHSMLQSKVGANAGIV-GMTKEHL-GLALAL---SVPVFVVVTKIDMCPPNVLQDTL   88 (320)
Q Consensus        16 ~~~~d~pgh~~~~-~~~-~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~l---~i~~~v~lnk~Dl~~~~~le~~l   88 (320)
                      +.+.|.||+++|. +.. -...+|..++  |.+.++... .-.++.+ .+.+..   ++|.+++.||.|+....-..+..
T Consensus        53 l~~~d~~~~~~~~~~~~~~~~~~~~~ii--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  130 (166)
T d1ctqa_          53 LDILDTAGQEEYSAMRDQYMRTGEGFLC--VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQA  130 (166)
T ss_dssp             EEEEEECCCGGGHHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHH
T ss_pred             eeeeeccCccccccchhhhhhcccccce--eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHH
Confidence            6777999999998 111 1344556666  888876221 1112222 233333   45788888999986432222222


Q ss_pred             HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      +++.+.   ..+   ++ +-.++.+.+..+++-..+.+++.
T Consensus       131 ~~~~~~---~~~---~~-~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         131 QDLARS---YGI---PY-IETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HHHHHH---HTC---CE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHH---hCC---eE-EEEcCCCCcCHHHHHHHHHHHHH
Confidence            333322   112   11 11344666677776666555443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.23  E-value=0.052  Score=44.34  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHhc
Q psy15138        205 VAVVGNVDAGKSTLLGVLTH  224 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~  224 (320)
                      +.|.||+|+|||-|+..+++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67999999999999999983

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.09  E-value=0.019  Score=44.04  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=53.3

Q ss_pred             ceEEEeCCCcchhh--------cc--CCCCccchhhhccceecCCCCchhHHHHH-HHHHHc--CCCcEEEEeCCCCCCh
Q psy15138         15 AASVFETRIHERDD--------DL--PEASPADHSMLQSKVGANAGIVGMTKEHL-GLALAL--SVPVFVVVTKIDMCPP   81 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--------~~--~~~~~~d~~~l~~vv~a~~g~~~~t~~~l-~l~~~l--~i~~~v~lnk~Dl~~~   81 (320)
                      .+.++|+||..+..        +.  .....+|.+++  +++++........+++ .+.+-.  ++|+++|+||+|+...
T Consensus        50 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          50 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLF--MVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE  127 (161)
T ss_dssp             EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEE--EEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred             eeeeccccccccccccchhHHHHHHHHHHHhccccce--eeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhh
Confidence            46677999976554        11  11344556655  8888875543333222 233322  4588999999997543


Q ss_pred             hHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138         82 NVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL  127 (320)
Q Consensus        82 ~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~  127 (320)
                      ...          +  ..+...+. +..+..+.+.++++.+.+.+.
T Consensus       128 ~~~----------~--~~~~~~~~-~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         128 TLG----------M--SEVNGHAL-IRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCE----------E--EEETTEEE-EECCTTTCTTHHHHHHHHHHH
T ss_pred             HHH----------H--HHhCCCcE-EEEECCCCCCHHHHHHHHHhh
Confidence            210          0  00111111 113346677788888877654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.82  E-value=0.063  Score=45.53  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      ..++|.|+-|.|||||.+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999998875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.063  Score=44.32  Aligned_cols=19  Identities=21%  Similarity=0.385  Sum_probs=17.3

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.|.||+|+||||+.++++
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            5688999999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.55  E-value=0.066  Score=43.37  Aligned_cols=19  Identities=16%  Similarity=0.246  Sum_probs=17.8

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.+.||.|+||||+.+.++
T Consensus        27 lLl~Gp~G~GKtt~a~~~a   45 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALS   45 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6889999999999999888

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.072  Score=42.94  Aligned_cols=19  Identities=21%  Similarity=0.459  Sum_probs=17.7

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.||||+|.|||+++.-|+
T Consensus        46 ~lLvG~pGVGKTalv~~LA   64 (195)
T d1jbka_          46 PVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             eEEEecCCcccHHHHHHHH
Confidence            6899999999999998887

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.05  Score=42.42  Aligned_cols=63  Identities=13%  Similarity=0.054  Sum_probs=37.3

Q ss_pred             eEEEeC---CCcchhhccCCCCccchhhhccceecCCCCchh-HHHH-HHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         16 ASVFET---RIHERDDDLPEASPADHSMLQSKVGANAGIVGM-TKEH-LGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~---pgh~~~~~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~-l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      +-++|.   +|+++|+...-...+|.+++  |.+.++...-. .... -.+.+.   -.+|.++|.||+|+..
T Consensus        55 ~~~~d~~~~~g~e~~~~~~~~~~~~~~il--vfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~  125 (172)
T d2g3ya1          55 IILLDMWENKGENEWLHDHCMQVGDAYLI--VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR  125 (172)
T ss_dssp             EEEECCTTTTHHHHHHHHCCCCCCSEEEE--EEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred             eeeeccccccccccccccccccccceeee--eecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccc
Confidence            455565   57999973333566788877  88887622211 1111 122222   2467888889999854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.072  Score=45.17  Aligned_cols=19  Identities=26%  Similarity=0.403  Sum_probs=17.6

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.||||+|+|||+++.-++
T Consensus        42 ~lLVG~~GvGKTalv~~la   60 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAEGLA   60 (268)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             cEEECCCCCcHHHHHHHHH
Confidence            6899999999999998877

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=90.18  E-value=0.34  Score=36.29  Aligned_cols=111  Identities=12%  Similarity=-0.073  Sum_probs=58.8

Q ss_pred             CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHH--HHHHHH--HcC-CCcEEEEeCCCCCChhHHHH
Q psy15138         14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKE--HLGLAL--ALS-VPVFVVVTKIDMCPPNVLQD   86 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~--~l~l~~--~l~-i~~~v~lnk~Dl~~~~~le~   86 (320)
                      ..+.+.|.||++.+.  ........|.+++  +++..+........  .....+  ... .|.+++.||.|+......++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~  126 (169)
T d1upta_          49 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY--VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE  126 (169)
T ss_dssp             EEEEEEEECCCGGGGGGGGGGCTTCSEEEE--EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             eEEEEeeccccccccccchhhhhhhhhhhh--hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHH
Confidence            457778999999998  3333555566655  77766544432222  222222  222 35667779999976554444


Q ss_pred             HHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138         87 TLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID  129 (320)
Q Consensus        87 ~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~  129 (320)
                      ...+.......  ....++- -.++.+.+..+++...+...+.
T Consensus       127 i~~~~~~~~~~--~~~~~~~-~~SA~~g~gv~e~~~~l~~~l~  166 (169)
T d1upta_         127 MANSLGLPALK--DRKWQIF-KTSATKGTGLDEAMEWLVETLK  166 (169)
T ss_dssp             HHHHHTGGGCT--TSCEEEE-ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--cCCCEEE-EEeCCCCCCHHHHHHHHHHHHH
Confidence            44433221111  1111211 1234566667776666655544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.045  Score=42.29  Aligned_cols=64  Identities=14%  Similarity=0.035  Sum_probs=39.1

Q ss_pred             ceEEEeCCCcchhh-c-cCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDD-D-LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~-~-~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|+||.++|. + -.-..++|.+++  |.+.++...  ....-...+.+.   -.+|.+||.||+|+..
T Consensus        52 ~l~~~d~~g~~~~~~~~~~~~~~a~~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~  122 (167)
T d1kaoa_          52 VLEILDTAGTEQFASMRDLYIKNGQGFIL--VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES  122 (167)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred             eeccccCCCccccccchHHHhhcccceee--eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh
Confidence            46778999999988 2 122345677777  888885221  222212223222   3467788889999853

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.061  Score=41.67  Aligned_cols=63  Identities=13%  Similarity=0.030  Sum_probs=37.6

Q ss_pred             ceEEEeCCCcchhhccC-CCCccchhhhccceecCCCCch--hHH--HHH-HHHHHcCCCcEEEEeCCCCC
Q psy15138         15 AASVFETRIHERDDDLP-EASPADHSMLQSKVGANAGIVG--MTK--EHL-GLALALSVPVFVVVTKIDMC   79 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~-~~~~~d~~~l~~vv~a~~g~~~--~t~--~~l-~l~~~l~i~~~v~lnk~Dl~   79 (320)
                      .+.+.|+||.++|.+.. -...+|.+++  |.+.++...-  ..+  ... .....-++|.++|.||+|+.
T Consensus        51 ~l~i~D~~g~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~  119 (168)
T d2atva1          51 SMEILDTAGQEDTIQREGHMRWGEGFVL--VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD  119 (168)
T ss_dssp             EEEEEECCCCCCCHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred             EEEEeecccccccccchhhhccccccee--ecccCCccchhhhhhhcccccccccccCcceeeeccchhhh
Confidence            46788999999987322 2334666777  8888863221  111  111 11222345777888999985

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=89.74  E-value=0.091  Score=46.50  Aligned_cols=27  Identities=26%  Similarity=0.236  Sum_probs=23.0

Q ss_pred             cCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138        201 LEIRVAVVGNVDAGKSTLLGVLTHGELD  228 (320)
Q Consensus       201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~  228 (320)
                      ....+.+.||.|+||||+.+.|+ +.+.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~-~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALL-ELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHH-HHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHH-HHcC
Confidence            35678999999999999999999 6553

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.074  Score=41.09  Aligned_cols=63  Identities=14%  Similarity=0.081  Sum_probs=37.9

Q ss_pred             eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH----cCCCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA----LSVPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~----l~i~~~v~lnk~Dl~~   80 (320)
                      +.+.|+||.++|.  ...-...+|.+++  |+++++...  ....-+-.+.+.    -.+|.++|.||+|+..
T Consensus        52 l~~~d~~g~~~~~~~~~~~~~~a~~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  122 (171)
T d2erxa1          52 LQITDTTGSHQFPAMQRLSISKGHAFIL--VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  122 (171)
T ss_dssp             EEEEECCSCSSCHHHHHHHHHHCSEEEE--EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             eccccccccccccccccccccceeEEEE--EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence            5668999999998  2222345667777  999886221  122212223332    3457778889999853

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.035  Score=43.11  Aligned_cols=63  Identities=14%  Similarity=0.085  Sum_probs=37.2

Q ss_pred             eEEEeCCCcchhhccCC--CCccchhhhccceecCCCCc-h-hHHHHHHHHHHcC--CCcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIV-G-MTKEHLGLALALS--VPVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~-~-~t~~~l~l~~~l~--i~~~v~lnk~Dl~~   80 (320)
                      +.+.|+||+++|..+..  ...+|.+++  |++.+.... . .......+.+...  +|.+++-||+|+..
T Consensus        57 ~~~~d~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  125 (170)
T d1r2qa_          57 FEIWDTAGQERYHSLAPMYYRGAQAAIV--VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN  125 (170)
T ss_dssp             EEEEEECCSGGGGGGHHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             EEeccCCCchhhhhhHHHHhhCcceEEE--EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc
Confidence            66779999999982211  235666666  888775322 1 2222234444443  35566669999853

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.12  Score=39.67  Aligned_cols=64  Identities=16%  Similarity=0.072  Sum_probs=33.4

Q ss_pred             ceEEEeCCCcchhhccC--CCCccchhhhccceecCCCCch-hHHHHHHHHH---HcCCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIVG-MTKEHLGLAL---ALSVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~---~l~i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|++|.++|..+.  -..++|.+++  |.+.++...- -....+...+   ....|.+|+-||+|+..
T Consensus        53 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~--v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~  122 (167)
T d1z08a1          53 NLAIWDTAGQERFHALGPIYYRDSNGAIL--VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK  122 (167)
T ss_dssp             EEEEEECCCC-------CCSSTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred             eeeeeccCCcceecccchhhccCCceeEE--EEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc
Confidence            36678999999998322  2456677777  9998864321 1111222222   22235566669999853

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.11  Score=43.76  Aligned_cols=44  Identities=18%  Similarity=0.117  Sum_probs=29.1

Q ss_pred             ccc-cCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138        194 RVE-SQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK  237 (320)
Q Consensus       194 ~l~-~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~  237 (320)
                      .+. .+...|..+-|.||+|+|||||+-.++.....++.--+.++
T Consensus        45 ~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          45 ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             HTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            453 44455899999999999999998666523344433333443

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.89  E-value=0.1  Score=38.56  Aligned_cols=28  Identities=11%  Similarity=0.062  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGELDN  229 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~  229 (320)
                      |-.+.+.|-+||||||+.+.|...+++-
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l~q~   33 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTFLQF   33 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTS
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            6678999999999999999886355554

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.37  E-value=0.11  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +-++||+|+|||-|.|.|+ ..+
T Consensus        71 iLfiGPTGvGKTElAk~LA-~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLA-KHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHH-HHT
T ss_pred             eeeeCCCCccHHHHHHHHH-hhc
Confidence            5899999999999999998 554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.37  E-value=0.11  Score=45.03  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.++||+|+|||.|.+.|+ -.+
T Consensus        56 ~lf~Gp~G~GKt~lak~la-~~l   77 (315)
T d1qvra3          56 FLFLGPTGVGKTELAKTLA-ATL   77 (315)
T ss_dssp             EEEBSCSSSSHHHHHHHHH-HHH
T ss_pred             EEEECCCcchHHHHHHHHH-HHh
Confidence            6799999999999999999 443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.53  E-value=0.33  Score=37.04  Aligned_cols=63  Identities=14%  Similarity=0.051  Sum_probs=35.4

Q ss_pred             eEEEeCCCcchhhccCC--CCccchhhhccceecCCCCc-hhHHHHH-HHHHHcCC--CcEEEEeCCCCCC
Q psy15138         16 ASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIV-GMTKEHL-GLALALSV--PVFVVVTKIDMCP   80 (320)
Q Consensus        16 ~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~l~i--~~~v~lnk~Dl~~   80 (320)
                      +-+.|+||+++|..+..  ...+|.+++  |++.+.... ...+... .+.+...-  |+++|.||+|+..
T Consensus        55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  123 (167)
T d1z0ja1          55 FLIWDTAGLERFRALAPMYYRGSAAAII--VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD  123 (167)
T ss_dssp             EEEEEECCSGGGGGGTHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred             eeeeecCCchhhhHHHHHHHhhccceEE--EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc
Confidence            45779999999982221  334566666  888775221 1111122 22222332  5667779999853

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=1.1  Score=33.95  Aligned_cols=87  Identities=14%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             ccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC-ChhHHHHHHHHHHHhhcCCCccccCccccccCCc
Q psy15138         35 PADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC-PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPT  113 (320)
Q Consensus        35 ~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~-~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gn  113 (320)
                      ..|..++  ++++.. ......+....+.....|.++++||.|.. +...+....+.+...+.     ..+. +..+..+
T Consensus        85 ~~~~~l~--~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~-----~~~~-~~vSA~~  155 (179)
T d1egaa1          85 DVELVIF--VVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMN-----FLDI-VPISAET  155 (179)
T ss_dssp             CEEEEEE--EEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSC-----CSEE-EECCTTT
T ss_pred             hcceeEE--EEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcC-----CCCE-EEEeCcC
Confidence            3444444  666554 44444444444444555899999999975 43444444444444221     1111 1234466


Q ss_pred             hhHHHHHHHHHHHHHHc
Q psy15138        114 EEQFDLLQKKIKSLIDN  130 (320)
Q Consensus       114 yd~~~~l~~q~~~~~~~  130 (320)
                      ..++++|.+.+.+.+-|
T Consensus       156 g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             TTTHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            67788888887665543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.84  E-value=0.11  Score=44.20  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |++++|+|++|+|||+|+..+.
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHH
T ss_pred             CceEeeccCCCCChHHHHHHHH
Confidence            9999999999999999997544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.74  E-value=0.19  Score=42.41  Aligned_cols=30  Identities=13%  Similarity=0.024  Sum_probs=23.6

Q ss_pred             ccc-cCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        194 RVE-SQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       194 ~l~-~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+. .+...|..+-|.||+|+|||||+-.++
T Consensus        51 ~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          51 ALGIGGLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             HTSSSSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             hhccCCcccceeEEEecCCCcHHHHHHHHHH
Confidence            453 445559999999999999999975555

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.16  E-value=0.15  Score=43.50  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCChHHHHHHHHh
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      |++++|+|++|+|||||+.-+.
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHH
Confidence            9999999999999999986443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=85.72  E-value=0.21  Score=43.26  Aligned_cols=22  Identities=36%  Similarity=0.537  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHhcCcC
Q psy15138        205 VAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      +.+.||.|+|||.|.+.|+ +.+
T Consensus       126 ~l~~G~pG~GKT~la~ala-~~~  147 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALG-EAL  147 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHH-HHH
T ss_pred             EEEECCCCccHHHHHHHHH-HHh
Confidence            4557999999999999999 654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.71  E-value=0.23  Score=41.93  Aligned_cols=30  Identities=17%  Similarity=0.072  Sum_probs=24.0

Q ss_pred             ccc-cCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138        194 RVE-SQDFLEIRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       194 ~l~-~~~~~g~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+. .+...|..+-|.||+|||||||+-.++
T Consensus        48 ~Lg~GGip~g~itei~G~~~sGKT~l~l~~~   78 (268)
T d1xp8a1          48 ALGVGGIPRGRITEIYGPESGGKTTLALAIV   78 (268)
T ss_dssp             HTSSSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             HhcCCCccCceEEEEecCCccchHHHHHHHH
Confidence            343 444458999999999999999997776

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.24  E-value=0.15  Score=42.86  Aligned_cols=15  Identities=20%  Similarity=0.488  Sum_probs=13.1

Q ss_pred             EEEEcCCCChHHHHH
Q psy15138        205 VAVVGNVDAGKSTLL  219 (320)
Q Consensus       205 v~ivGpnGsGKSTLl  219 (320)
                      +.|+|+-||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            579999999999865

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.19  E-value=0.41  Score=39.56  Aligned_cols=19  Identities=21%  Similarity=0.455  Sum_probs=18.0

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      |.|.|+.|+||+++.+.|.
T Consensus        26 vlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999999996

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.94  E-value=0.21  Score=43.02  Aligned_cols=18  Identities=28%  Similarity=0.239  Sum_probs=15.8

Q ss_pred             CcEEEEEcCCCChHHHHH
Q psy15138        202 EIRVAVVGNVDAGKSTLL  219 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl  219 (320)
                      |+...+.|-||+|||||-
T Consensus        14 ~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             SCEEEEECSTTSSHHHHH
T ss_pred             CCEEEEEccCCCCcccce
Confidence            666789999999999976

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=84.71  E-value=0.18  Score=42.80  Aligned_cols=15  Identities=20%  Similarity=0.543  Sum_probs=13.3

Q ss_pred             EEEEcCCCChHHHHH
Q psy15138        205 VAVVGNVDAGKSTLL  219 (320)
Q Consensus       205 v~ivGpnGsGKSTLl  219 (320)
                      +.|.|+-||||||.|
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            679999999999875

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.41  E-value=0.21  Score=43.13  Aligned_cols=18  Identities=28%  Similarity=0.239  Sum_probs=15.7

Q ss_pred             CcEEEEEcCCCChHHHHH
Q psy15138        202 EIRVAVVGNVDAGKSTLL  219 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl  219 (320)
                      |+...+.|.||+|||||-
T Consensus        14 ~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CCEEEEEECTTSCHHHHT
T ss_pred             CCEEEEEccCCCCccccc
Confidence            666789999999999965

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.24  E-value=0.31  Score=36.70  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=18.2

Q ss_pred             CcEEEEEcCCCChHHH-HHHHHh
Q psy15138        202 EIRVAVVGNVDAGKST-LLGVLT  223 (320)
Q Consensus       202 g~~v~ivGpnGsGKST-Ll~~l~  223 (320)
                      |..-.++||-.||||| |++.+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHH
Confidence            4456799999999999 778775

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.17  E-value=0.22  Score=41.89  Aligned_cols=25  Identities=12%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138        202 EIRVAVVGNVDAGKSTLLGVLTHGEL  227 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl~~l~~G~l  227 (320)
                      .-.+.+.||-++|||||+.+|. .++
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~-~~l  128 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIA-HTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH-HHS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHH-HHh
Confidence            3447899999999999999999 665

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=83.34  E-value=0.44  Score=35.35  Aligned_cols=105  Identities=9%  Similarity=-0.071  Sum_probs=53.0

Q ss_pred             ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch--hHHHHHHHHHHc---CCCcEEEEeCCCCCChhHHHHH
Q psy15138         15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALAL---SVPVFVVVTKIDMCPPNVLQDT   87 (320)
Q Consensus        15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~~~le~~   87 (320)
                      .+.+.|+||.+.+.  ...-....|.+++  +++..+....  ....+..+....   .+|.+++.||.|+.+.....++
T Consensus        45 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i  122 (160)
T d1r8sa_          45 SFTVWDVGGQDKIRPLWRHYFQNTQGLIF--VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI  122 (160)
T ss_dssp             EEEEEECCCCGGGHHHHHHHTTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHH
T ss_pred             EEEEecCCCcccchhhhhhhhccceeEEE--EEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHH
Confidence            46778999999987  1112344555555  7776653221  222333333322   2356677799998765444333


Q ss_pred             HHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHH
Q psy15138         88 LKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIK  125 (320)
Q Consensus        88 l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~  125 (320)
                      ..+....+    +......+. .++.+.++.+++-+.+.
T Consensus       123 ~~~~~~~~----~~~~~~~~~~~SAktg~gi~e~~~~l~  157 (160)
T d1r8sa_         123 TDKLGLHS----LRHRNWYIQATCATSGDGLYEGLDWLS  157 (160)
T ss_dssp             HHHTTGGG----CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             HHHHHHHH----HhhCCCEEEEeECCCCCCHHHHHHHHH
Confidence            22222111    111111222 34466666666555443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.31  E-value=0.22  Score=44.27  Aligned_cols=19  Identities=21%  Similarity=0.459  Sum_probs=16.0

Q ss_pred             EEEEcCCCChHHHHHHHHh
Q psy15138        205 VAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       205 v~ivGpnGsGKSTLl~~l~  223 (320)
                      +.||||+|+|||+++.-|+
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            4899999999999986544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.31  E-value=0.31  Score=38.04  Aligned_cols=63  Identities=10%  Similarity=0.084  Sum_probs=31.5

Q ss_pred             ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc--------hhHHHHH----HHHH---HcCCCcEEEEeCCC
Q psy15138         15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV--------GMTKEHL----GLAL---ALSVPVFVVVTKID   77 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~--------~~t~~~l----~l~~---~l~i~~~v~lnk~D   77 (320)
                      .+.+.|++|++++..  ...-...+.+++  +++......        .-..+.+    .++.   ..++|++|+.||+|
T Consensus        45 ~~~~~D~~gq~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~D  122 (200)
T d1zcba2          45 PFKMVDVGGQRSERKRWFECFDSVTSILF--LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  122 (200)
T ss_dssp             EEEEEEECC-------CTTSCTTCCEEEE--EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eeeeecccceeeecccccccccccceeEE--EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccch
Confidence            467789999999982  222333444444  666665332        1122222    2222   23568888889999


Q ss_pred             CC
Q psy15138         78 MC   79 (320)
Q Consensus        78 l~   79 (320)
                      +.
T Consensus       123 l~  124 (200)
T d1zcba2         123 LL  124 (200)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.99  E-value=0.29  Score=36.08  Aligned_cols=21  Identities=19%  Similarity=0.091  Sum_probs=16.3

Q ss_pred             cEEEEEcCCCChHHHHHHHHh
Q psy15138        203 IRVAVVGNVDAGKSTLLGVLT  223 (320)
Q Consensus       203 ~~v~ivGpnGsGKSTLl~~l~  223 (320)
                      .+..|.+|.|||||+++-.+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            345789999999999885444

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.98  E-value=0.32  Score=42.00  Aligned_cols=18  Identities=28%  Similarity=0.237  Sum_probs=16.1

Q ss_pred             CcEEEEEcCCCChHHHHH
Q psy15138        202 EIRVAVVGNVDAGKSTLL  219 (320)
Q Consensus       202 g~~v~ivGpnGsGKSTLl  219 (320)
                      |+...+.|-||+|||||-
T Consensus        14 gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CCEEEEECCTTSSHHHHH
T ss_pred             CCEEEEEccCCCCcccce
Confidence            666789999999999997

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.28  E-value=0.75  Score=34.62  Aligned_cols=64  Identities=13%  Similarity=0.064  Sum_probs=39.4

Q ss_pred             ceEEEeCCCcchhhcc--C-CCCccchhhhccceecCCCCc-hhHHHHH-HHHHHc---CCCcEEEEeCCCCCC
Q psy15138         15 AASVFETRIHERDDDL--P-EASPADHSMLQSKVGANAGIV-GMTKEHL-GLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        15 ~~~~~d~pgh~~~~~~--~-~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      .+.+.|.+|++.+...  . -..++|.+++  |++.++.-. ...++.+ .+.+..   ++|.+||.||+|+..
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~  123 (165)
T d1z06a1          52 KIQLWDTAGQERFRKSMVQHYYRNVHAVVF--VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS  123 (165)
T ss_dssp             EEEEEECCCSHHHHTTTHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred             EEEEEeccCchhhccccceeeecCCCceEE--EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh
Confidence            3667799999888721  1 1346778877  999887321 1122222 344444   346778889999854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=0.17  Score=38.80  Aligned_cols=65  Identities=14%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             CceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138         14 NAASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL---SVPVFVVVTKIDMCP   80 (320)
Q Consensus        14 ~~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~   80 (320)
                      -.+-+.|++|+++|..+  .-..++|.+++  |.+.++...  ....-.-.+.+..   .+|.++|-||+|+..
T Consensus        51 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~il--v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~  122 (167)
T d1c1ya_          51 CMLEILDTAGTEQFTAMRDLYMKNGQGFAL--VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED  122 (167)
T ss_dssp             EEEEEEEECSSCSSTTHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred             EEeccccccCcccccccccccccccceeEE--eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccc
Confidence            34777899999999822  22445677777  889886322  1222222344433   346778889999853