Psyllid ID: psy15159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MLSVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI
cHHHHHHHHHHccEEEEEEccEEEcccccccccHHHHHcccccccccccccEEEEEccccEEEcccccccccEEEcccccccccccccccccccccccccccccEEEEccEEEEEEEEEcccccccccHHHHHHHccccccEEEEcccccHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEEEEcccEEEEEEEEccccEEEccHccccccccccccccccccccccccccEEEEcEEEEEcEEEEEEEcccccHHHHcHHHHHHHccEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHccEEcc
MLSVFLTLFFtkifrpsqgidlaidessftgetepatkvtspmlktnghtsmRNIAFMGTLVrcgngkgidlaidessftgetepatkvtspmlktnghtsmRNIAFMGTLVrcgngkaqlnhpedytSMINYKERLIEKGvvvntgeksefGEVFKMmqaeeapktplqksmDILGTQLSLYSFCIIGLIMLLgwfqgrpvldmFTIGVSLAVaaipeglpIVVTVTLALGVMRIYI
MLSVFLTLFftkifrpsqgidlaidessftgetepatkvtspmlktnghTSMRNIAFMGTLVRCGNGKGIDLAIdessftgetepatkvtspmlktngHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAvaaipeglpiVVTVTLALGVMRIYI
MLSVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI
**SVFLTLFFTKIFRPSQGIDLAI***************************MRNIAFMGTLVRCGNGKGIDLAID**************************MRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVF****************MDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIY*
MLSVFLTLFFTKIFRPSQGIDLAIDESSFTGETEP***************SMRNIAFMGTLVRCGNGKGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKM*QA*****TPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI
MLSVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI
MLSVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDES*FTG***************NGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI
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MLSVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
Q80XR2 918 Calcium-transporting ATPa yes N/A 0.617 0.160 0.641 2e-54
Q5R5K5 918 Calcium-transporting ATPa yes N/A 0.617 0.160 0.654 4e-54
P98194 919 Calcium-transporting ATPa yes N/A 0.617 0.159 0.654 4e-54
Q64566 919 Calcium-transporting ATPa yes N/A 0.617 0.159 0.649 5e-54
P57709 953 Calcium-transporting ATPa yes N/A 0.617 0.154 0.643 8e-54
Q8R4C1 944 Calcium-transporting ATPa no N/A 0.605 0.152 0.596 4e-50
A7L9Z8 944 Calcium-transporting ATPa no N/A 0.605 0.152 0.590 2e-49
O75185 946 Calcium-transporting ATPa no N/A 0.605 0.152 0.614 5e-49
O43108 928 Calcium-transporting ATPa yes N/A 0.634 0.162 0.531 3e-39
O59868 899 Calcium-transporting ATPa yes N/A 0.617 0.163 0.520 3e-38
>sp|Q80XR2|AT2C1_MOUSE Calcium-transporting ATPase type 2C member 1 OS=Mus musculus GN=Atp2c1 PE=1 SV=2 Back     alignment and function desciption
 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 125/170 (73%), Gaps = 23/170 (13%)

Query: 68  KGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMR-NIAFMGTLVRCGNGKAQLNHPED 126
           + +DL++DESS TGET P +KVT+P    NG  + R NIAFMGTLVRCG  K        
Sbjct: 177 EAVDLSVDESSLTGETAPCSKVTAPQPAANGDLASRSNIAFMGTLVRCGKAK-------- 228

Query: 127 YTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFC 186
                         G+V+ TGE SEFGEVFKMMQAEEAPKTPLQKSMD+LG QLS YSF 
Sbjct: 229 --------------GIVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSFG 274

Query: 187 IIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
           IIG+IML+GW  G+ +L+MFTI VSLAVAAIPEGLPIVVTVTLALGVMR+
Sbjct: 275 IIGIIMLVGWLLGKDILEMFTISVSLAVAAIPEGLPIVVTVTLALGVMRM 324
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8
>sp|Q5R5K5|AT2C1_PONAB Calcium-transporting ATPase type 2C member 1 OS=Pongo abelii GN=ATP2C1 PE=2 SV=1 Back     alignment and function description
>sp|P98194|AT2C1_HUMAN Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3 Back     alignment and function description
>sp|Q64566|AT2C1_RAT Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus GN=Atp2c1 PE=2 SV=1 Back     alignment and function description
>sp|P57709|AT2C1_BOVIN Calcium-transporting ATPase type 2C member 1 OS=Bos taurus GN=ATP2C1 PE=2 SV=1 Back     alignment and function description
>sp|Q8R4C1|AT2C2_RAT Calcium-transporting ATPase type 2C member 2 OS=Rattus norvegicus GN=Atp2c2 PE=2 SV=1 Back     alignment and function description
>sp|A7L9Z8|AT2C2_MOUSE Calcium-transporting ATPase type 2C member 2 OS=Mus musculus GN=Atp2c2 PE=2 SV=1 Back     alignment and function description
>sp|O75185|AT2C2_HUMAN Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens GN=ATP2C2 PE=1 SV=2 Back     alignment and function description
>sp|O43108|ATC1_YARLI Calcium-transporting ATPase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PMR1 PE=3 SV=1 Back     alignment and function description
>sp|O59868|ATC1_SCHPO Calcium-transporting ATPase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmr1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
332027655 943 Calcium-transporting ATPase type 2C memb 0.617 0.155 0.757 2e-65
383848721 941 PREDICTED: calcium-transporting ATPase t 0.617 0.156 0.751 4e-65
307209677 901 Calcium-transporting ATPase type 2C memb 0.617 0.163 0.751 8e-65
307170158 909 Calcium-transporting ATPase type 2C memb 0.617 0.161 0.745 1e-64
350396138 932 PREDICTED: calcium-transporting ATPase t 0.617 0.157 0.745 2e-64
350396135 944 PREDICTED: calcium-transporting ATPase t 0.617 0.155 0.745 2e-64
340719177 944 PREDICTED: calcium-transporting ATPase t 0.617 0.155 0.745 2e-64
345491849 900 PREDICTED: LOW QUALITY PROTEIN: calcium- 0.617 0.163 0.721 7e-64
242018503 897 calcium-transporting ATPase type 2C memb 0.609 0.161 0.730 1e-62
328781034 944 PREDICTED: calcium-transporting ATPase t 0.617 0.155 0.727 2e-62
>gi|332027655|gb|EGI67723.1| Calcium-transporting ATPase type 2C member 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 138/169 (81%), Gaps = 22/169 (13%)

Query: 68  KGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDY 127
           + IDLAIDESSFTGETEPA K T+P+LKTNG TS RNIAFMGTLVRCGNGK         
Sbjct: 203 EAIDLAIDESSFTGETEPAQKSTAPLLKTNGLTSKRNIAFMGTLVRCGNGK--------- 253

Query: 128 TSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCI 187
                        G+VVNTGEKSEFGEVF MMQAEEAPKTPLQ+SMDILGTQLS YSFCI
Sbjct: 254 -------------GIVVNTGEKSEFGEVFSMMQAEEAPKTPLQRSMDILGTQLSFYSFCI 300

Query: 188 IGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
           IG+IMLLGW QG+ +L+MFTIGVSLAVAAIPEGLPIVVTVTLALGVMR+
Sbjct: 301 IGIIMLLGWIQGKAILEMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRM 349

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383848721|ref|XP_003699996.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307209677|gb|EFN86535.1| Calcium-transporting ATPase type 2C member 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307170158|gb|EFN62566.1| Calcium-transporting ATPase type 2C member 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350396138|ref|XP_003484455.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350396135|ref|XP_003484454.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340719177|ref|XP_003398033.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345491849|ref|XP_003426720.1| PREDICTED: LOW QUALITY PROTEIN: calcium-transporting ATPase type 2C member 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242018503|ref|XP_002429714.1| calcium-transporting ATPase type 2C member, putative [Pediculus humanus corporis] gi|212514720|gb|EEB16976.1| calcium-transporting ATPase type 2C member, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328781034|ref|XP_001120297.2| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
FB|FBgn0052451 1034 SPoCk "Secretory Pathway Calci 0.407 0.093 0.845 2.1e-54
UNIPROTKB|E1BXM8 921 ATP2C1 "Uncharacterized protei 0.407 0.105 0.855 6.4e-52
UNIPROTKB|E7ERC6 894 ATP2C1 "Calcium-transporting A 0.407 0.108 0.824 1.9e-50
UNIPROTKB|H0Y9V7 903 ATP2C1 "Calcium-transporting A 0.407 0.107 0.824 2e-50
ZFIN|ZDB-GENE-060503-615 922 atp2c1 "ATPase, Ca++ transport 0.407 0.105 0.835 2.1e-50
UNIPROTKB|Q5R5K5 918 ATP2C1 "Calcium-transporting A 0.407 0.105 0.824 2.2e-50
UNIPROTKB|P98194 919 ATP2C1 "Calcium-transporting A 0.407 0.105 0.824 2.2e-50
MGI|MGI:1889008 918 Atp2c1 "ATPase, Ca++-sequester 0.407 0.105 0.814 2.2e-50
UNIPROTKB|F1M9B5 882 Atp2c1 "Calcium-transporting A 0.407 0.109 0.814 2.2e-50
UNIPROTKB|F1M281 886 Atp2c1 "Calcium-transporting A 0.407 0.109 0.814 2.3e-50
FB|FBgn0052451 SPoCk "Secretory Pathway Calcium atpase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 416 (151.5 bits), Expect = 2.1e-54, Sum P(2) = 2.1e-54
 Identities = 82/97 (84%), Positives = 90/97 (92%)

Query:   140 KGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQG 199
             KG+VV+TGE+SEFGEVFKMMQAEEAPKTPLQKSMDILG QLS YSF IIG+IMLLGW QG
Sbjct:   345 KGIVVSTGERSEFGEVFKMMQAEEAPKTPLQKSMDILGAQLSFYSFLIIGVIMLLGWLQG 404

Query:   200 RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
             +P+ +MF I VSLAVAAIPEGLPIVVTVTLALGVMR+
Sbjct:   405 KPLSEMFNISVSLAVAAIPEGLPIVVTVTLALGVMRM 441
GO:0005388 "calcium-transporting ATPase activity" evidence=ISS
GO:0006816 "calcium ion transport" evidence=ISS;IMP
GO:0016021 "integral to membrane" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0015410 "manganese-transporting ATPase activity" evidence=ISS
GO:0051208 "sequestering of calcium ion" evidence=IMP
GO:0019722 "calcium-mediated signaling" evidence=IMP
GO:0005777 "peroxisome" evidence=IDA
GO:0042044 "fluid transport" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
UNIPROTKB|E1BXM8 ATP2C1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E7ERC6 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y9V7 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-615 atp2c1 "ATPase, Ca++ transporting, type 2C, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R5K5 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|P98194 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1889008 Atp2c1 "ATPase, Ca++-sequestering" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1M9B5 Atp2c1 "Calcium-transporting ATPase type 2C member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M281 Atp2c1 "Calcium-transporting ATPase type 2C member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q80XR2AT2C1_MOUSE3, ., 6, ., 3, ., 80.64110.61760.1601yesN/A
Q64566AT2C1_RAT3, ., 6, ., 3, ., 80.64910.61760.1599yesN/A
P98194AT2C1_HUMAN3, ., 6, ., 3, ., 80.65490.61760.1599yesN/A
O59868ATC1_SCHPO3, ., 6, ., 3, ., 80.52070.61760.1635yesN/A
O43108ATC1_YARLI3, ., 6, ., 3, ., 80.53140.63440.1627yesN/A
Q5R5K5AT2C1_PONAB3, ., 6, ., 3, ., 80.65490.61760.1601yesN/A
P57709AT2C1_BOVIN3, ., 6, ., 3, ., 80.64320.61760.1542yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
TIGR01522 884 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium- 3e-68
pfam00122222 pfam00122, E1-E2_ATPase, E1-E2 ATPase 1e-32
COG0474 917 COG0474, MgtA, Cation transport ATPase [Inorganic 7e-32
TIGR01116 917 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic 2e-25
TIGR01517 944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 5e-17
TIGR01522 884 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium- 1e-14
TIGR01494 543 TIGR01494, ATPase_P-type, ATPase, P-type (transpor 6e-14
TIGR01647 754 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e 1e-13
TIGR01106 997 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux 6e-12
TIGR01524 867 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating 2e-08
PRK10517 902 PRK10517, PRK10517, magnesium-transporting ATPase 5e-07
COG0474 917 COG0474, MgtA, Cation transport ATPase [Inorganic 2e-06
pfam00122222 pfam00122, E1-E2_ATPase, E1-E2 ATPase 3e-05
TIGR01517 944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 7e-05
TIGR01512 536 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb 0.001
TIGR01525 556 TIGR01525, ATPase-IB_hvy, heavy metal translocatin 0.002
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information 
 Score =  224 bits (573), Expect = 3e-68
 Identities = 101/171 (59%), Positives = 120/171 (70%), Gaps = 24/171 (14%)

Query: 68  KGIDLAIDESSFTGETEPATKVTSPMLKTN--GHTSMRNIAFMGTLVRCGNGKAQLNHPE 125
           + +DL+IDES+ TGET P +KVT+P+            NIAFMGTLVRCG+GK       
Sbjct: 157 EAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGK------- 209

Query: 126 DYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSF 185
                          G+VV TG  +EFG VFKMMQA E PKTPLQKSMD+LG QLSL SF
Sbjct: 210 ---------------GIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQLSLVSF 254

Query: 186 CIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
            +IG+I L+GWFQG+  L+MFTI VSLAVAAIPEGLPI+VTVTLALGV+R+
Sbjct: 255 GVIGVICLVGWFQGKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRM 305

This model describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase Back     alignment and domain information
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase Back     alignment and domain information
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
KOG0202|consensus 972 100.0
PRK10517 902 magnesium-transporting ATPase MgtA; Provisional 100.0
TIGR01522 884 ATPase-IIA2_Ca golgi membrane calcium-translocatin 100.0
TIGR01647 755 ATPase-IIIA_H plasma-membrane proton-efflux P-type 100.0
COG2217 713 ZntA Cation transport ATPase [Inorganic ion transp 100.0
TIGR01524 867 ATPase-IIIB_Mg magnesium-translocating P-type ATPa 100.0
TIGR01523 1053 ATPase-IID_K-Na potassium and/or sodium efflux P-t 100.0
PRK15122 903 magnesium-transporting ATPase; Provisional 100.0
COG0474 917 MgtA Cation transport ATPase [Inorganic ion transp 100.0
PRK10671 834 copA copper exporting ATPase; Provisional 100.0
TIGR01511 562 ATPase-IB1_Cu copper-(or silver)-translocating P-t 100.0
PRK11033 741 zntA zinc/cadmium/mercury/lead-transporting ATPase 100.0
TIGR01116 917 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium 99.98
TIGR01106 997 ATPase-IIC_X-K sodium or proton efflux -- potassiu 99.98
TIGR01512 536 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo 99.98
PF00122230 E1-E2_ATPase: E1-E2 ATPase p-type cation-transport 99.97
TIGR01525 556 ATPase-IB_hvy heavy metal translocating P-type ATP 99.97
TIGR01517 941 ATPase-IIB_Ca plasma-membrane calcium-translocatin 99.97
TIGR01657 1054 P-ATPase-V P-type ATPase of unknown pump specifici 99.97
PRK01122 679 potassium-transporting ATPase subunit B; Provision 99.97
KOG0208|consensus 1140 99.96
KOG0207|consensus 951 99.96
PRK14010 673 potassium-transporting ATPase subunit B; Provision 99.96
TIGR01497 675 kdpB K+-transporting ATPase, B subunit. One sequen 99.96
TIGR01494 499 ATPase_P-type ATPase, P-type (transporting), HAD s 99.95
KOG0204|consensus 1034 99.95
KOG0205|consensus 942 99.91
KOG0203|consensus 1019 99.9
KOG0209|consensus 1160 99.83
TIGR01652 1057 ATPase-Plipid phospholipid-translocating P-type AT 99.74
COG2216 681 KdpB High-affinity K+ transport system, ATPase cha 99.68
PLN03190 1178 aminophospholipid translocase; Provisional 99.28
KOG0210|consensus 1051 97.6
KOG0206|consensus 1151 92.96
>KOG0202|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-37  Score=294.54  Aligned_cols=193  Identities=46%  Similarity=0.691  Sum_probs=174.5

Q ss_pred             eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCc----------ceeeeeeccccccCCcceee
Q psy15159         23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNG----------KGIDLAIDESSFTGETEPAT   87 (238)
Q Consensus        23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G----------~~~~~~vdES~LTGEs~Pv~   87 (238)
                      +|||+++++++++|+++.|++|+|  +   +++++++| ||||+|.++-|          +..++++|||.|||||.||.
T Consensus        96 ~~QEy~aEkalEaLk~l~p~~~~V~R~gk~~~i~A~eL-VPGDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~  174 (972)
T KOG0202|consen   96 FVQEYNAEKALEALKELVPPMAHVLRSGKLQHILAREL-VPGDIVELKVGDKIPADLRLIEAKSLRIDESSLTGESEPVS  174 (972)
T ss_pred             eeeehhhHHHHHHHHhcCCccceEEecCcccceehhcc-CCCCEEEEecCCccccceeEEeeeeeeeecccccCCccccc
Confidence            789999999999999999999998  3   89999999 99999999999          34478999999999999999


Q ss_pred             ccCCCCC--CCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCC
Q psy15159         88 KVTSPML--KTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAP  165 (238)
Q Consensus        88 K~~~~~~--~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~  165 (238)
                      |.....+  ++.+..+++|++|+||.|..|.+                      +++|+.||.+|.+|+|.+++.+.+.+
T Consensus       175 K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a----------------------~GIVi~TG~nTeiG~I~~~m~~~e~~  232 (972)
T KOG0202|consen  175 KDTDAVPKDENADVQDKKNIAFSGTLVVAGRA----------------------KGIVIGTGLNTEIGKIFKMMQATESP  232 (972)
T ss_pred             ccCccccCCCCCccccceeeEeecceeecCce----------------------eEEEEeccccchHHHHHHHHhccCCC
Confidence            9887766  34679999999999999999999                      99999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHhc-----C---CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy15159        166 KTPLQKSMDILGTQLS-LYSFCIIGLIML-LGWFQ-----G---RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR  235 (238)
Q Consensus       166 ~~~l~~~~~~~~~~l~-~~~~~~~~~~~~-~~~~~-----~---~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~r  235 (238)
                      ++|||+.+|.+..+++ .++++.....++ +.|+.     |   +.+.+.|.+++++.|+++|+|||+.++++++.|.+|
T Consensus       233 kTPLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~~p~~~g~~fk~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG~~r  312 (972)
T KOG0202|consen  233 KTPLQKKLDEFGKQLSKVISFICVGVWLLNIGHFLDPVHGGSWFKGALYYFKIAVSLAVAAIPEGLPAVVTTTLALGTRR  312 (972)
T ss_pred             CCcHHHHHHHHHHHHHHHheehhhhHHHhhhhhhccccccccchhchhhhhhHHHHHHHHhccCCCcchhhhhHHHhHHH
Confidence            9999999999999999 444444444444 56666     6   577899999999999999999999999999999999


Q ss_pred             hhC
Q psy15159        236 IYI  238 (238)
Q Consensus       236 l~k  238 (238)
                      |+|
T Consensus       313 Mak  315 (972)
T KOG0202|consen  313 MAK  315 (972)
T ss_pred             HHh
Confidence            987

>PRK10517 magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase Back     alignment and domain information
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>PRK15122 magnesium-transporting ATPase; Provisional Back     alignment and domain information
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase Back     alignment and domain information
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>PRK01122 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>KOG0208|consensus Back     alignment and domain information
>KOG0207|consensus Back     alignment and domain information
>PRK14010 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>TIGR01497 kdpB K+-transporting ATPase, B subunit Back     alignment and domain information
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>KOG0204|consensus Back     alignment and domain information
>KOG0205|consensus Back     alignment and domain information
>KOG0203|consensus Back     alignment and domain information
>KOG0209|consensus Back     alignment and domain information
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03190 aminophospholipid translocase; Provisional Back     alignment and domain information
>KOG0210|consensus Back     alignment and domain information
>KOG0206|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
3ba6_A 994 Structure Of The Ca2e1p Phosphoenzyme Intermediate 6e-11
2dqs_A 995 Crystal Structure Of The Calcium Pump With Amppcp I 6e-11
1kju_A 994 Ca2+-Atpase In The E2 State Length = 994 6e-11
3tlm_A 992 Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp 9e-11
3b8e_A 998 Crystal Structure Of The Sodium-Potassium Pump Leng 6e-10
3n23_A 992 Crystal Structure Of The High Affinity Complex Betw 6e-10
3ixz_A 1034 Pig Gastric H+K+-Atpase Complexed With Aluminium Fl 9e-10
2zxe_A 1028 Crystal Structure Of The Sodium - Potassium Pump In 1e-09
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 68  KGIDLAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKAQLNHPED 126
           K   L +D+S  TGE+    K T P+      +   +N+ F GT +  G           
Sbjct: 169 KSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL-------- 220
Query: 127 YTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLS--LYS 184
                         G+V  TG  +E G++   M A E  KTPLQ+ +D  G QLS  +  
Sbjct: 221 --------------GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL 266
Query: 185 FCIIGLIMLLGWFQG--------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
            C+   ++ +G F          R  +  F I V+LAVAAIPEGLP V+T  LALG  R+
Sbjct: 267 ICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 326
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995 Back     alignment and structure
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994 Back     alignment and structure
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992 Back     alignment and structure
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998 Back     alignment and structure
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992 Back     alignment and structure
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034 Back     alignment and structure
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 3e-49
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 2e-09
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 1e-45
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 6e-09
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 2e-45
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 1e-08
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 1e-37
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 2e-05
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 2e-34
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 4e-06
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
 Score =  171 bits (436), Expect = 3e-49
 Identities = 57/176 (32%), Positives = 76/176 (43%), Gaps = 33/176 (18%)

Query: 71  DLAIDESSFTGETEPATKVTSPMLKTN-GHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTS 129
            L +D+S  TGE+    K T P+      +   +N+ F GT +  G              
Sbjct: 173 TLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL----------- 221

Query: 130 MINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIG 189
                      G+V  TG  +E G++   M A E  KTPLQ+ +D  G QLS     I  
Sbjct: 222 -----------GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICV 270

Query: 190 LIMLLGWFQG----------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235
            + L+               R  +  F I V+LAVAAIPEGLP V+T  LALG  R
Sbjct: 271 AVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRR 326
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034 Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034 Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 100.0
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 100.0
3rfu_A 736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 100.0
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 100.0
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 100.0
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 100.0
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 100.0
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 99.97
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 99.88
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 99.87
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Back     alignment and structure
Probab=100.00  E-value=2.6e-34  Score=288.87  Aligned_cols=191  Identities=24%  Similarity=0.331  Sum_probs=176.0

Q ss_pred             eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCCcceee
Q psy15159         23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGETEPAT   87 (238)
Q Consensus        23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGEs~Pv~   87 (238)
                      ++||+++++++++|+++.++.++|  |   ++|+++|| +|||+|.+++|+          +.++.||||+|||||.|+.
T Consensus       153 ~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~L-v~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~  231 (1028)
T 2zxe_A          153 YYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFV-VAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQT  231 (1028)
T ss_dssp             HHHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGC-CTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHC-CcCCEEEECCCCEeeceEEEEeeCcEEEEcCccCCCCccee
Confidence            457788999999999999999988  5   78999999 999999999993          3368999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCC
Q psy15159         88 KVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKT  167 (238)
Q Consensus        88 K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~  167 (238)
                      |.+++..++  +.+++|++|+||.|.+|.+                      +++|++||.+|.+|+|.+++..++..++
T Consensus       232 K~~~~~~~~--~~~~~n~v~~GT~v~~G~~----------------------~~~V~~tG~~T~~g~i~~~~~~~~~~~t  287 (1028)
T 2zxe_A          232 RSPEFSSEN--PLETRNIAFFSTNCVEGTA----------------------RGVVVYTGDRTVMGRIATLASGLEVGRT  287 (1028)
T ss_dssp             CCSSCCCSS--TTTCSSEECTTCEEEEEEE----------------------EEEEEECGGGSHHHHHHHHHHHSCCCCC
T ss_pred             cccCCCCCC--cccccceEEeCceEEcceE----------------------EEEEEEeccccHHHHHHHhccCCCCCCC
Confidence            998876433  5689999999999999999                      9999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159        168 PLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI  238 (238)
Q Consensus       168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k  238 (238)
                      |+|+.+++++.++.++++++++++++++++.+.+|...+.+++++++++|||+||++++++++.+++||+|
T Consensus       288 ~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~llv~~iP~~Lp~~vti~l~~~~~~mak  358 (1028)
T 2zxe_A          288 PIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMAR  358 (1028)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999888888877778889999999999999999999999999999999999986
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A Back     alignment and structure
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 238
d1wpga4 472 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP 2e-14
d1wpga1115 b.82.7.1 (A:125-239) Calcium ATPase, transduction 3e-04
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 69.7 bits (170), Expect = 2e-14
 Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 148 EKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSF--CIIGLIMLLGWFQ------- 198
           E +          A E  KTPLQ+ +D  G QLS      C+   ++ +G F        
Sbjct: 113 ENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGS 172

Query: 199 -GRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
             R  +  F I V+LAVAAIPEGLP V+T  LALG  R+
Sbjct: 173 WIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 211
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d1wpga1115 Calcium ATPase, transduction domain A {Rabbit (Ory 99.88
d1wpga4 472 Calcium ATPase, transmembrane domain M {Rabbit (Or 98.08
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.88  E-value=1.9e-23  Score=157.36  Aligned_cols=89  Identities=29%  Similarity=0.480  Sum_probs=78.6

Q ss_pred             cccccCCceeeccEEEecCcc------------eeeeeeccccccCCcceeeccCCCCCCC-CCCCCCcceeeeccEEEe
Q psy15159         48 GHTSMRNIAFMGTLVRCGNGK------------GIDLAIDESSFTGETEPATKVTSPMLKT-NGHTSMRNIAFMGTLVRC  114 (238)
Q Consensus        48 ~~i~~~~L~v~GDiv~l~~G~------------~~~~~vdES~LTGEs~Pv~K~~~~~~~~-~~~~~~~~~v~aGT~v~~  114 (238)
                      ++|+++|| ||||+|.+++|+            +.++.||||+|||||.|+.|.+.+..+. ....++.|++|+||.|.+
T Consensus        14 ~~I~~~eL-v~GDiv~l~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~~~~~~~~~~n~lf~GT~V~~   92 (115)
T d1wpga1          14 QRIKARDI-VPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAA   92 (115)
T ss_dssp             EEEEGGGC-CTTCEEEEETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCCTTCCGGGCTTEECTTCEEEE
T ss_pred             EEEeHHHC-CCCCEEEECCCCEEeeceEEEEeeccceEEEEeecccceEEEEeecccccccccccccccceEEeccEEEe
Confidence            56999999 999999999992            3356799999999999999998766444 456678999999999999


Q ss_pred             eeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhh
Q psy15159        115 GNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMM  159 (238)
Q Consensus       115 G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~  159 (238)
                      |.+                      +++|++||.+|++|||.+++
T Consensus        93 G~~----------------------~~~V~~tG~~T~~G~i~~~i  115 (115)
T d1wpga1          93 GKA----------------------LGIVATTGVSTEIGKIRDQM  115 (115)
T ss_dssp             CEE----------------------EEEEEECGGGSHHHHHHHHH
T ss_pred             eeE----------------------EEEEEEEccccHHHHHHHhC
Confidence            999                      99999999999999998864
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure