Psyllid ID: psy15189
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 150 | ||||||
| 340715525 | 569 | PREDICTED: glycosyltransferase 25 family | 0.953 | 0.251 | 0.645 | 3e-51 | |
| 383862287 | 570 | PREDICTED: glycosyltransferase 25 family | 0.953 | 0.250 | 0.638 | 9e-50 | |
| 350422829 | 569 | PREDICTED: glycosyltransferase 25 family | 0.953 | 0.251 | 0.625 | 1e-49 | |
| 328789321 | 567 | PREDICTED: glycosyltransferase 25 family | 0.94 | 0.248 | 0.640 | 3e-48 | |
| 380019473 | 558 | PREDICTED: glycosyltransferase 25 family | 0.953 | 0.256 | 0.625 | 7e-48 | |
| 91078804 | 559 | PREDICTED: similar to Glycosyltransferas | 0.933 | 0.250 | 0.626 | 2e-47 | |
| 345482468 | 567 | PREDICTED: glycosyltransferase 25 family | 0.953 | 0.252 | 0.576 | 5e-47 | |
| 242007885 | 259 | conserved hypothetical protein [Pediculu | 0.94 | 0.544 | 0.601 | 5e-46 | |
| 307213488 | 195 | Glycosyltransferase 25 family member [Ha | 0.94 | 0.723 | 0.612 | 1e-45 | |
| 158300399 | 554 | AGAP012208-PA [Anopheles gambiae str. PE | 0.946 | 0.256 | 0.569 | 7e-45 |
| >gi|340715525|ref|XP_003396262.1| PREDICTED: glycosyltransferase 25 family member-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/144 (64%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
Query: 1 MLPGYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATI 60
++ GY DPYH RPM GEIGCFLSHYNIWN+V++N ++VLEDDVRFE FFRQK+ I
Sbjct: 371 IMAGYTDPYHNRPMTMGEIGCFLSHYNIWNKVIENGFKSIIVLEDDVRFEPFFRQKVNYI 430
Query: 61 LKELKTKTLPAWDLIYLGRKKLSEKPDTWVSGSRYLVEASYSYWTLGYLLSRQGARKLTQ 120
LKELK WDL+YLGRK+L+E ++W+ GS+YLV A YSYWTLGY+LSR GA+KL +
Sbjct: 431 LKELKDLQF-EWDLVYLGRKRLAENAESWIDGSKYLVHAGYSYWTLGYILSRSGAKKLIE 489
Query: 121 ARPLSNLLPVDEFLPLLSGKHPED 144
A PL LLPVDE+LP+LS HP D
Sbjct: 490 AMPLKQLLPVDEYLPILSDVHPRD 513
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383862287|ref|XP_003706615.1| PREDICTED: glycosyltransferase 25 family member-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|350422829|ref|XP_003493297.1| PREDICTED: glycosyltransferase 25 family member-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|328789321|ref|XP_397154.3| PREDICTED: glycosyltransferase 25 family member-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|380019473|ref|XP_003693629.1| PREDICTED: glycosyltransferase 25 family member-like [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|91078804|ref|XP_970300.1| PREDICTED: similar to Glycosyltransferase 25 family member [Tribolium castaneum] gi|270003725|gb|EFA00173.1| hypothetical protein TcasGA2_TC002995 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|345482468|ref|XP_001608141.2| PREDICTED: glycosyltransferase 25 family member-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|242007885|ref|XP_002424748.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508251|gb|EEB12010.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
| >gi|307213488|gb|EFN88897.1| Glycosyltransferase 25 family member [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
| >gi|158300399|ref|XP_320324.3| AGAP012208-PA [Anopheles gambiae str. PEST] gi|157013141|gb|EAA00118.3| AGAP012208-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 150 | ||||||
| ZFIN|ZDB-GENE-070720-6 | 623 | colgalt1 "collagen beta(1-O)ga | 0.94 | 0.226 | 0.601 | 6.2e-46 | |
| UNIPROTKB|Q5U483 | 611 | glt25d1-b "Procollagen galacto | 0.94 | 0.230 | 0.587 | 1e-43 | |
| UNIPROTKB|F1S940 | 623 | GLT25D1 "Uncharacterized prote | 0.94 | 0.226 | 0.594 | 1.7e-43 | |
| UNIPROTKB|A5PK45 | 623 | GLT25D1 "Procollagen galactosy | 0.94 | 0.226 | 0.594 | 2.2e-43 | |
| UNIPROTKB|F1PMG8 | 623 | GLT25D1 "Uncharacterized prote | 0.94 | 0.226 | 0.587 | 4.5e-43 | |
| UNIPROTKB|Q8NBJ5 | 622 | GLT25D1 "Procollagen galactosy | 0.94 | 0.226 | 0.587 | 5.7e-43 | |
| ZFIN|ZDB-GENE-070705-32 | 598 | si:ch211-13f8.2 "si:ch211-13f8 | 0.946 | 0.237 | 0.590 | 9.3e-43 | |
| MGI|MGI:1924348 | 617 | Colgalt1 "collagen beta(1-O)ga | 0.94 | 0.228 | 0.573 | 1.9e-42 | |
| RGD|1309002 | 617 | Colgalt1 "collagen beta(1-O)ga | 0.94 | 0.228 | 0.573 | 2.5e-42 | |
| UNIPROTKB|A0JPH3 | 611 | glt25d1-a "Procollagen galacto | 0.94 | 0.230 | 0.566 | 6.6e-42 |
| ZFIN|ZDB-GENE-070720-6 colgalt1 "collagen beta(1-O)galactosyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 86/143 (60%), Positives = 114/143 (79%)
Query: 1 MLPGYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATI 60
MLPGY+DPYH RP+ KGE+GCFLSHYNIW E+VD ++LEDD+RFE FF+++L +
Sbjct: 393 MLPGYSDPYHGRPLTKGELGCFLSHYNIWKEIVDRGLKTSLILEDDLRFEIFFKRRLQNL 452
Query: 61 LKELKTKTLPAWDLIYLGRKKLS-EKPDTWVSGSRYLVEASYSYWTLGYLLSRQGARKLT 119
L EL++++L WDLIY+GRK++ ++P+ V R LVEA YSYWTLGY++S QGARKL
Sbjct: 453 LLELQSQSLD-WDLIYIGRKRMQVDRPEKAVPNIRNLVEADYSYWTLGYMMSLQGARKLL 511
Query: 120 QARPLSNLLPVDEFLPLLSGKHP 142
+A+PLS +LPVDEFLP++ KHP
Sbjct: 512 KAQPLSKMLPVDEFLPVMFNKHP 534
|
|
| UNIPROTKB|Q5U483 glt25d1-b "Procollagen galactosyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S940 GLT25D1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A5PK45 GLT25D1 "Procollagen galactosyltransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PMG8 GLT25D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8NBJ5 GLT25D1 "Procollagen galactosyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070705-32 si:ch211-13f8.2 "si:ch211-13f8.2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1924348 Colgalt1 "collagen beta(1-O)galactosyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1309002 Colgalt1 "collagen beta(1-O)galactosyltransferase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A0JPH3 glt25d1-a "Procollagen galactosyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 150 | |||
| pfam01755 | 200 | pfam01755, Glyco_transf_25, Glycosyltransferase fa | 1e-23 | |
| cd06532 | 128 | cd06532, Glyco_transf_25, Glycosyltransferase fami | 1e-22 | |
| COG3306 | 255 | COG3306, COG3306, Glycosyltransferase involved in | 9e-22 |
| >gnl|CDD|216681 pfam01755, Glyco_transf_25, Glycosyltransferase family 25 (LPS biosynthesis protein) | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-23
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 29/157 (18%)
Query: 1 MLPGYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATI 60
Y RP+ GEIGCFLSHY++W + V+ N + +++LEDDV F+ L +
Sbjct: 50 YNFLLRSKYAGRPLTLGEIGCFLSHYSLWQKCVELNLEYIIILEDDVILSENFKAILQFL 109
Query: 61 LKELKTKTLPAWDLIYLGRKKLS-EKPDTWVSGSRYLVEASYSY---------------- 103
LKE+ L K + D ++ + S +
Sbjct: 110 LKEIN----ELEFLRLGEWLKTRFDPNDKFIVRLETFLMDSKKFKRTPIADYGNRAFYLL 165
Query: 104 -----WTLGYLLSRQGARKLTQARPLSNL-LPVDEFL 134
T GYL++ + A+KL + N LPVD+ +
Sbjct: 166 KSGHAGTAGYLITPKAAKKLLKY--SKNWPLPVDDLM 200
|
Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis. Length = 200 |
| >gnl|CDD|133474 cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis | Back alignment and domain information |
|---|
| >gnl|CDD|225843 COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 150 | |||
| KOG4179|consensus | 568 | 100.0 | ||
| PF01755 | 200 | Glyco_transf_25: Glycosyltransferase family 25 (LP | 99.97 | |
| COG3306 | 255 | Glycosyltransferase involved in LPS biosynthesis [ | 99.94 | |
| cd06532 | 128 | Glyco_transf_25 Glycosyltransferase family 25 [lip | 99.94 | |
| PHA02688 | 323 | ORF059 IMV protein VP55; Provisional | 98.89 | |
| PF03213 | 325 | Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 | 98.64 | |
| PF02434 | 252 | Fringe: Fringe-like; InterPro: IPR003378 The Notch | 96.41 | |
| cd02514 | 334 | GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es | 96.15 | |
| PLN03153 | 537 | hypothetical protein; Provisional | 94.96 | |
| PF03071 | 434 | GNT-I: GNT-I family; InterPro: IPR004139 The biosy | 94.94 | |
| PF04666 | 297 | Glyco_transf_54: N-Acetylglucosaminyltransferase-I | 94.72 | |
| PF01762 | 195 | Galactosyl_T: Galactosyltransferase; InterPro: IPR | 90.88 | |
| PF05060 | 356 | MGAT2: N-acetylglucosaminyltransferase II (MGAT2); | 90.05 | |
| KOG2287|consensus | 349 | 88.71 | ||
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 82.36 | |
| KOG2246|consensus | 364 | 80.2 |
| >KOG4179|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=266.74 Aligned_cols=145 Identities=59% Similarity=1.083 Sum_probs=138.9
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHcCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccc
Q psy15189 1 MLPGYADPYHKRPMKKGEIGCFLSHYNIWNEVVDNNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRK 80 (150)
Q Consensus 1 ~~~~~~~~~~~~~lt~geiGC~lSH~~~w~~~~~~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~ 80 (150)
|||||++||++|+||.|||||+|||+++|+.+++.+.+-+||||||+.|..+|...+.++++++..... +||+||+|++
T Consensus 343 ~LpGY~DPys~Rplt~GEiGCFLSHY~iW~evV~r~l~kvlvfEDD~RFe~~f~~rl~~lm~d~~~~~~-~wdLIY~GRK 421 (568)
T KOG4179|consen 343 MLPGYRDPYSGRPLTKGEIGCFLSHYNIWKEVVDRGLEKVLVFEDDLRFEHDFRTRLMRLMQDVDAEHL-DWDLIYLGRK 421 (568)
T ss_pred ecCCccCcccCCcccCcceeeehhHHHHHHHHHHhccceEEEecccccccHHHHHHHHHHHHHHHhhcC-CceEEEechh
Confidence 799999999999999999999999999999999999999999999999999999999999999988776 9999999999
Q ss_pred cCCCCCCceecCcceEEeeCCcceeEEeeecHHHHHHHHhhCCCCCCchhhhhhHHHHccCCCccc
Q psy15189 81 KLSEKPDTWVSGSRYLVEASYSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFLPLLSGKHPEDLG 146 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~t~aY~Is~~~A~klL~~~~~~~~~pvD~~l~~~f~~~~~~~~ 146 (150)
+.+...++++++.++|+.++++++|-||+||-+||+|||...|..+.+|||.|+++||++||...|
T Consensus 422 r~~~e~E~av~~~~nLv~a~YSYWTLgYvisL~GArKLlaa~Pl~kmlPVDEfLPiMfdkHPn~~~ 487 (568)
T KOG4179|consen 422 RMQEEEEKAVENVRNLVEAGYSYWTLGYVISLQGARKLLAANPLKKMLPVDEFLPIMFDKHPNKEY 487 (568)
T ss_pred hcCchhhhcccccCCceeccccceehhhHhhhhhHHHhhccCchhccCchhhhhhhhhccCccHHH
Confidence 988877889999999999999999999999999999999999998899999999999999999665
|
|
| >PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis | Back alignment and domain information |
|---|
| >PHA02688 ORF059 IMV protein VP55; Provisional | Back alignment and domain information |
|---|
| >PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein | Back alignment and domain information |
|---|
| >PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms [] | Back alignment and domain information |
|---|
| >cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides | Back alignment and domain information |
|---|
| >PLN03153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum | Back alignment and domain information |
|---|
| >PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2 | Back alignment and domain information |
|---|
| >KOG2287|consensus | Back alignment and domain information |
|---|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
| >KOG2246|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 150 | |||
| 1fo8_A | 343 | Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl | 96.64 | |
| 2j0a_A | 280 | Beta-1,3-N-acetylglucosaminyltransferase manic FR; | 95.23 |
| >1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.015 Score=46.31 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=65.9
Q ss_pred CchhHHHH-----HHHH-HHHHHHHH-cCCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCC
Q psy15189 15 KKGEIGCF-----LSHY-NIWNEVVD-NNHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPD 87 (150)
Q Consensus 15 t~geiGC~-----lSH~-~~w~~~~~-~~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~ 87 (150)
.....||. ..|+ .+..++.+ .+.++++|||||.++.++|.+.+++.++.+.. |-.+..++.........
T Consensus 71 ~~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~----D~~I~~ISa~n~~g~~~ 146 (343)
T 1fo8_A 71 QPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKA----DPSLWCVSAWNDNGKEQ 146 (343)
T ss_dssp CTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHH----CTTEEEEESCCTTCBGG
T ss_pred chhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhc----CCcEEEEecccCccccc
Confidence 45567773 2333 45555554 24689999999999999999988888877665 44455444322111110
Q ss_pred c-eecCcceEEeeCCcceeEEeeecHHHHHHHHhhCCCCCCchhhhhh
Q psy15189 88 T-WVSGSRYLVEASYSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFL 134 (150)
Q Consensus 88 ~-~~~~~~~l~~~~~~~~t~aY~Is~~~A~klL~~~~~~~~~pvD~~l 134 (150)
. .......++...+ ...-|.+.+|++=+.+-..-|. ...|.|+
T Consensus 147 ~~~~~~~~~lyrs~~-f~~wGWa~wr~~W~e~~~~wp~---~~Wd~w~ 190 (343)
T 1fo8_A 147 MVDSSKPELLYRTDF-FPGLGWLLLAELWAELEPKWPK---AFWDDWM 190 (343)
T ss_dssp GSCTTCTTCEEEESS-CCCSSEEEEHHHHHHHGGGCCS---SCHHHHH
T ss_pred cccccCcceEEeecC-CCchhhhhcHHHHHHHhhhcch---hHHHHHH
Confidence 0 0011223444432 3345899999998876433332 2467665
|
| >2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 150 | |||
| d1fo8a_ | 343 | N-acetylglucosaminyltransferase I {Rabbit (Oryctol | 96.93 |
| >d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: N-acetylglucosaminyltransferase I domain: N-acetylglucosaminyltransferase I species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.93 E-value=0.0038 Score=47.91 Aligned_cols=112 Identities=19% Similarity=0.130 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHHHHHHHHc-CCCeEEEEccCCcCchhHHHHHHHHHHHhhhCCCCCccEEEeccccCCCCCCc-eecCc
Q psy15189 16 KGEIGCFLSHYNIWNEVVDN-NHDIVMVLEDDVRFESFFRQKLATILKELKTKTLPAWDLIYLGRKKLSEKPDT-WVSGS 93 (150)
Q Consensus 16 ~geiGC~lSH~~~w~~~~~~-~~~~~lIlEDD~~l~~~f~~~l~~~l~~~~~~~~~~~dii~L~~~~~~~~~~~-~~~~~ 93 (150)
.|..||..+=..+..++-+. +.+.++|||||.++.++|.+.+++.+..+.. |-.+.-++.......... .....
T Consensus 78 ~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~----D~~i~~IS~wNdnG~~~~~~~~~~ 153 (343)
T d1fo8a_ 78 QGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKA----DPSLWCVSAWNDNGKEQMVDSSKP 153 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHH----CTTEEEEESCCTTCBGGGSCTTCT
T ss_pred cchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhc----CCCEEEEeccccCCCcccccCCCC
Confidence 35778988666788888865 3589999999999999999999888887765 333444433221111100 00112
Q ss_pred ceEEeeCCcceeEEeeecHHHHHHHHhhCCCCCCchhhhhhH
Q psy15189 94 RYLVEASYSYWTLGYLLSRQGARKLTQARPLSNLLPVDEFLP 135 (150)
Q Consensus 94 ~~l~~~~~~~~t~aY~Is~~~A~klL~~~~~~~~~pvD~~l~ 135 (150)
..+++.....| -|++++|+.=+.|-..-|. .-.|.||.
T Consensus 154 ~~lyrs~~fpg-~GW~~~r~~W~el~~kwp~---~~Wd~w~r 191 (343)
T d1fo8a_ 154 ELLYRTDFFPG-LGWLLLAELWAELEPKWPK---AFWDDWMR 191 (343)
T ss_dssp TCEEEESSCCC-SSEEEEHHHHHHHGGGCCS---SCHHHHHT
T ss_pred ceEEeecCCCc-hhhheeHHHHHHhhhcCCC---CCcHHhhh
Confidence 24555543333 6999999988776544442 25788874
|