Psyllid ID: psy15201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MFWADGGKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLSGLSL
Secondary Structure (PSIPRED)
cccccccEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcccEEEEEEEcHHHHcccHHHHHHHHHHHHHHHHHHcccHHHccEEEccccccEccccccccccccccccccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mfwadggksavsGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLkqagfrdsdieyvpcsgltgenlttpsqvpaltswysgpclldviglsglsl
Flexible Loop (DISEMBL)
mfwadggksavsgvNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLSGLSL
Low Complexity Region (SEG)
MFWADGGKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLSGLSL
Disordered region (IsUnstruct)
*********AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLS****
Disordered Region (DISOPRED)
*****GGKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLSG***
Disordered Region (DISEMBL)
*********AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLSGLSL
Disordered Region (DISPRO)
*F**DGGKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLSG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFWADGGKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVIGLSGLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
Q2KHZ2	686	HBS1-like protein OS=Bos	yes	N/A	0.804	0.113	0.615	4e-24
Q6AXM7	679	HBS1-like protein OS=Ratt	yes	N/A	0.804	0.114	0.615	4e-24
Q69ZS7	682	HBS1-like protein OS=Mus	yes	N/A	0.804	0.114	0.615	4e-24
Q9Y450	684	HBS1-like protein OS=Homo	yes	N/A	0.804	0.114	0.615	7e-24
Q5R6Y0	684	HBS1-like protein OS=Pong	yes	N/A	0.804	0.114	0.602	2e-23
O13354	715	Eukaryotic peptide chain	N/A	N/A	0.804	0.109	0.471	8e-15
Q9HGI6	701	Eukaryotic peptide chain	yes	N/A	0.804	0.111	0.425	7e-14
Q8LPC4	449	Elongation factor 1-alpha	N/A	N/A	0.804	0.173	0.432	1e-13
Q9HGI7	712	Eukaryotic peptide chain	N/A	N/A	0.804	0.109	0.448	2e-13
P23637	741	Eukaryotic peptide chain	N/A	N/A	0.824	0.107	0.447	5e-13

>sp|Q2KHZ2|HBS1L_BOVIN HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct: 399 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRS 458

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q   LT WY G CLL+ I
Sbjct: 459 QSSELTKWYKGLCLLEQI 476

Bos taurus (taxid: 9913)

>sp|Q6AXM7|HBS1L_RAT HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 60/78 (76%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENLT+ S
Sbjct: 392 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRS 451

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q   LT WY G CLL+ I
Sbjct: 452 QSSDLTKWYKGLCLLEQI 469

Rattus norvegicus (taxid: 10116)

>sp|Q69ZS7|HBS1L_MOUSE HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2

 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 60/78 (76%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENLT  S
Sbjct: 395 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTARS 454

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q   LT+WY G CLL+ I
Sbjct: 455 QSSDLTTWYKGMCLLEQI 472

Mus musculus (taxid: 10090)

>sp|Q9Y450|HBS1L_HUMAN HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct: 397 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRS 456

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q   LT WY G CLL+ I
Sbjct: 457 QSSELTKWYKGLCLLEQI 474

Homo sapiens (taxid: 9606)

>sp|Q5R6Y0|HBS1L_PONAB HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/78 (60%), Positives = 59/78 (75%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct: 397 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRS 456

Query: 73  QVPALTSWYSGPCLLDVI 90
           +   LT WY G CLL+ I
Sbjct: 457 RSSELTKWYKGLCLLEQI 474

Pongo abelii (taxid: 9601)

>sp|O13354|ERF3_CANAX Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 9/87 (10%)

Query: 9   SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66
           +   GVN++ VV+NK+D  TV WS++R+QE  TKLGAFLK  G+   DI Y+P SG TG 
Sbjct: 425 AKTQGVNKIIVVVNKMDDSTVGWSKERYQECTTKLGAFLKGIGYAKDDIIYMPVSGYTGA 484

Query: 67  NL---TTPSQVPALTSWYSGPCLLDVI 90
            L     P   P    WY GP LL+ +
Sbjct: 485 GLKDRVDPKDCP----WYDGPSLLEYL 507

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Candida albicans (taxid: 5476)

>sp|Q9HGI6|ERF3_DEBHA Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SUP35 PE=3 SV=4

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 9/87 (10%)

Query: 9   SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66
           +   GVN++ VV+NK+D  TV W++DR+++ +TKLG FLK  G+   DI ++P SG TG 
Sbjct: 411 AKTQGVNKIIVVVNKMDDPTVGWAEDRYKDCITKLGTFLKGIGYAKDDIIFMPVSGYTGA 470

Query: 67  NL---TTPSQVPALTSWYSGPCLLDVI 90
            +     P   P    WYSGP LL+ +
Sbjct: 471 GIKDRVNPKDCP----WYSGPSLLEFL 493

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q8LPC4|EF1A_PORYE Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 13  GVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL-T 69
           GV Q+ V  NK+D   V+WSQDR++E+  ++  +LK+ G+  + +  VP SG TGENL  
Sbjct: 144 GVKQMIVACNKMDDKNVNWSQDRYEEVSKEMDLYLKKVGYNPAKVPKVPTSGWTGENLFE 203

Query: 70  TPSQVPALTSWYSGPCLLDVI 90
              +  AL  WY GPCLL+ +
Sbjct: 204 RTDKTHALGKWYKGPCLLEAL 224

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.

Porphyra yezoensis (taxid: 2788)

>sp|Q9HGI7|ERF3_CANMA Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 9/87 (10%)

Query: 9   SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66
           +   GVN++ VV+NK+D  TV+WS++R+QE  TKLG FLK  G+   DI  +P SG TG 
Sbjct: 422 AKTQGVNKIIVVVNKMDDPTVNWSKERYQECTTKLGVFLKGIGYNKDDIINMPVSGYTGA 481

Query: 67  NL---TTPSQVPALTSWYSGPCLLDVI 90
            L     P   P    WY GP LL+ +
Sbjct: 482 GLKDRVNPKDCP----WYEGPSLLEYL 504

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Candida maltosa (taxid: 5479)

>sp|P23637|ERF3_OGAPI Eukaryotic peptide chain release factor GTP-binding subunit OS=Ogataea pini GN=SUP2 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 5/85 (5%)

Query: 9   SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE 66
           +   GVN+L VVINK+D  TV+WS++R++E  TKL  +LK  G++  D+ ++P SG TG 
Sbjct: 451 AKTQGVNKLVVVINKMDDPTVNWSKERYEECTTKLAMYLKGVGYQKGDVLFMPVSGYTGA 510

Query: 67  NLTTP-SQVPALTSWYSGPCLLDVI 90
            L    SQ  A   WY+GP LL+ +
Sbjct: 511 GLKERVSQKDA--PWYNGPSLLEYL 533

Involved in translation termination. Stimulates the activity of ERF1. Binds guanine nucleotides.

Ogataea pini (taxid: 4923)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
194865010	667	GG14552 [Drosophila erecta] gi|190652999	0.804	0.116	0.782	7e-30
28380956	670	RE29053p [Drosophila melanogaster]	0.804	0.116	0.782	2e-29
45550900	670	HBS1 [Drosophila melanogaster] gi|454457	0.804	0.116	0.782	2e-29
195587082	670	GD13431 [Drosophila simulans] gi|1941953	0.804	0.116	0.782	3e-29
195336754	670	GM14160 [Drosophila sechellia] gi|194128	0.804	0.116	0.782	3e-29
195440460	698	GK10605 [Drosophila willistoni] gi|19416	0.804	0.111	0.756	9e-29
195490605	669	GE20906 [Drosophila yakuba] gi|194179310	0.804	0.116	0.769	9e-29
194747006	665	GF24953 [Drosophila ananassae] gi|190623	0.804	0.117	0.756	1e-28
195161101	668	GL24819 [Drosophila persimilis] gi|19411	0.804	0.116	0.769	3e-28
198465249	668	GA23522 [Drosophila pseudoobscura pseudo	0.804	0.116	0.769	3e-28

>gi|194865010|ref|XP_001971216.1| GG14552 [Drosophila erecta] gi|190652999|gb|EDV50242.1| GG14552 [Drosophila erecta]

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/78 (78%), Positives = 68/78 (87%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQ+RF EIVTKL +FLK AGF++SD+ + PCSGLTGENLT  +
Sbjct: 381 GVNQLGVVINKLDTVGWSQERFTEIVTKLKSFLKLAGFKESDVSFTPCSGLTGENLTKKA 440

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q PALTSWYSGP LLDVI
Sbjct: 441 QEPALTSWYSGPHLLDVI 458

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28380956|gb|AAO41445.1| RE29053p [Drosophila melanogaster]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/78 (78%), Positives = 67/78 (85%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQDRF EIVTKL +FLK AGF+DSD+ + PCSGLTGENLT  +
Sbjct: 384 GVNQLGVVINKLDTVGWSQDRFTEIVTKLKSFLKLAGFKDSDVSFTPCSGLTGENLTKKA 443

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q PALT+WYSG  LLDVI
Sbjct: 444 QEPALTNWYSGRHLLDVI 461

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45550900|ref|NP_652729.2| HBS1 [Drosophila melanogaster] gi|45445746|gb|AAF47584.2| HBS1 [Drosophila melanogaster] gi|281183421|gb|ADA53579.1| FI04779p [Drosophila melanogaster]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/78 (78%), Positives = 67/78 (85%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQDRF EIVTKL +FLK AGF+DSD+ + PCSGLTGENLT  +
Sbjct: 384 GVNQLGVVINKLDTVGWSQDRFTEIVTKLKSFLKLAGFKDSDVSFTPCSGLTGENLTKKA 443

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q PALT+WYSG  LLDVI
Sbjct: 444 QEPALTNWYSGRHLLDVI 461

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587082|ref|XP_002083294.1| GD13431 [Drosophila simulans] gi|194195303|gb|EDX08879.1| GD13431 [Drosophila simulans]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/78 (78%), Positives = 67/78 (85%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQDRF EIVTKL +FLK AGF++SD+ + PCSGLTGENLT  +
Sbjct: 384 GVNQLGVVINKLDTVGWSQDRFTEIVTKLKSFLKLAGFKESDVSFTPCSGLTGENLTKKA 443

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q PALTSWYSG  LLDVI
Sbjct: 444 QEPALTSWYSGRHLLDVI 461

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195336754|ref|XP_002034998.1| GM14160 [Drosophila sechellia] gi|194128091|gb|EDW50134.1| GM14160 [Drosophila sechellia]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/78 (78%), Positives = 67/78 (85%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQDRF EIVTKL +FLK AGF++SD+ + PCSGLTGENLT  +
Sbjct: 384 GVNQLGVVINKLDTVGWSQDRFTEIVTKLKSFLKLAGFKESDVSFTPCSGLTGENLTKKA 443

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q PALTSWYSG  LLDVI
Sbjct: 444 QEPALTSWYSGRHLLDVI 461

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195440460|ref|XP_002068060.1| GK10605 [Drosophila willistoni] gi|194164145|gb|EDW79046.1| GK10605 [Drosophila willistoni]

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 59/78 (75%), Positives = 68/78 (87%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WS++RF EIVTKL AFLKQAGF++SD+ + PCSGLTGENLT  +
Sbjct: 412 GVNQLGVVINKLDTVGWSKERFDEIVTKLKAFLKQAGFKESDVTFTPCSGLTGENLTKSA 471

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q  ALT+WY+GP LLDVI
Sbjct: 472 QESALTAWYTGPHLLDVI 489

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490605|ref|XP_002093209.1| GE20906 [Drosophila yakuba] gi|194179310|gb|EDW92921.1| GE20906 [Drosophila yakuba]

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/78 (76%), Positives = 66/78 (84%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQ+RF EIV KL +FLK AGF+DSD+ + PCSGLTGENLT  +
Sbjct: 383 GVNQLGVVINKLDTVGWSQERFTEIVMKLKSFLKLAGFKDSDVSFTPCSGLTGENLTKKA 442

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q  ALTSWYSGP LLDVI
Sbjct: 443 QESALTSWYSGPHLLDVI 460

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747006|ref|XP_001955945.1| GF24953 [Drosophila ananassae] gi|190623227|gb|EDV38751.1| GF24953 [Drosophila ananassae]

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/78 (75%), Positives = 67/78 (85%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQ+RF EIV KL +FLKQAGF++SD+ + PCSGLTGENLT  +
Sbjct: 379 GVNQLGVVINKLDTVGWSQERFTEIVAKLKSFLKQAGFKESDVTFTPCSGLTGENLTKKA 438

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q  ALTSWY+GP LLDVI
Sbjct: 439 QESALTSWYNGPHLLDVI 456

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195161101|ref|XP_002021408.1| GL24819 [Drosophila persimilis] gi|194118521|gb|EDW40564.1| GL24819 [Drosophila persimilis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/78 (76%), Positives = 66/78 (84%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQ RF EIVTKL +FLKQAGF++SD+ + PCSGLTGENLT  +
Sbjct: 382 GVNQLGVVINKLDTVGWSQQRFTEIVTKLKSFLKQAGFKESDVSFTPCSGLTGENLTKTA 441

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q  ALTSWYSG  LLDVI
Sbjct: 442 QEAALTSWYSGRHLLDVI 459

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198465249|ref|XP_002134936.1| GA23522 [Drosophila pseudoobscura pseudoobscura] gi|198150074|gb|EDY73563.1| GA23522 [Drosophila pseudoobscura pseudoobscura]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/78 (76%), Positives = 66/78 (84%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GVNQLGVVINKLDTV WSQ RF EIVTKL +FLKQAGF++SD+ + PCSGLTGENLT  +
Sbjct: 382 GVNQLGVVINKLDTVGWSQQRFTEIVTKLKSFLKQAGFKESDVSFTPCSGLTGENLTKTA 441

Query: 73  QVPALTSWYSGPCLLDVI 90
           Q  ALTSWYSG  LLDVI
Sbjct: 442 QETALTSWYSGRHLLDVI 459

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
FB|FBgn0042712	670	HBS1 "HBS1" [Drosophila melano	0.804	0.116	0.782	1.4e-27
ZFIN|ZDB-GENE-030131-2987	682	hbs1l "HBS1-like (S. cerevisia	0.804	0.114	0.666	9.2e-25
UNIPROTKB|H0YES5	170	HBS1L "HBS1-like protein" [Hom	0.804	0.458	0.615	2.1e-22
UNIPROTKB|E1BW59	688	HBS1L "Uncharacterized protein	0.804	0.113	0.628	2.9e-22
UNIPROTKB|B7Z1K2	408	HBS1L "HBS1-like protein" [Hom	0.804	0.191	0.615	3.4e-22
UNIPROTKB|B7Z524	520	HBS1L "HBS1-like protein" [Hom	0.804	0.15	0.615	1e-21
RGD|1308509	679	Hbs1l "Hbs1-like (S. cerevisia	0.804	0.114	0.615	1.2e-21
UNIPROTKB|Q6AXM7	679	Hbs1l "HBS1-like protein" [Rat	0.804	0.114	0.615	1.2e-21
UNIPROTKB|H0YDX7	554	HBS1L "HBS1-like protein" [Hom	0.804	0.140	0.615	1.2e-21
UNIPROTKB|F1N1V0	686	HBS1L "HBS1-like protein" [Bos	0.804	0.113	0.615	1.6e-21

FB|FBgn0042712 HBS1 "HBS1" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 61/78 (78%), Positives = 67/78 (85%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GVNQLGVVINKLDTV WSQDRF EIVTKL +FLK AGF+DSD+ + PCSGLTGENLT  +
Sbjct:   384 GVNQLGVVINKLDTVGWSQDRFTEIVTKLKSFLKLAGFKDSDVSFTPCSGLTGENLTKKA 443

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q PALT+WYSG  LLDVI
Sbjct:   444 QEPALTNWYSGRHLLDVI 461

GO:0006415 "translational termination" evidence=ISS

GO:0003747 "translation release factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-2987 hbs1l "HBS1-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 291 (107.5 bits), Expect = 9.2e-25, P = 9.2e-25
 Identities = 52/78 (66%), Positives = 66/78 (84%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI++KLG FLKQAGF+DSD+ YVP SGL+GENLTT S
Sbjct:   395 GVTQLAVAVNKMDQVNWQQERFQEIISKLGHFLKQAGFKDSDVFYVPTSGLSGENLTTKS 454

Query:    73 QVPALTSWYSGPCLLDVI 90
             +V  LT+WY+GPCL++ I
Sbjct:   455 KVADLTAWYTGPCLVEQI 472

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|H0YES5 HBS1L "HBS1-like protein" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct:    21 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRS 80

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:    81 QSSELTKWYKGLCLLEQI 98

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E1BW59 HBS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 268 (99.4 bits), Expect = 2.9e-22, P = 2.9e-22
 Identities = 49/78 (62%), Positives = 59/78 (75%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI +KLG FLKQAGF++SD+ Y+P SGL GENL T S
Sbjct:   400 GVTQLAVAVNKMDQVNWQQERFQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRS 459

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:   460 QSSDLTKWYQGKCLLEQI 477

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|B7Z1K2 HBS1L "HBS1-like protein" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct:   121 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRS 180

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:   181 QSSELTKWYKGLCLLEQI 198

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|B7Z524 HBS1L "HBS1-like protein" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct:   233 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRS 292

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:   293 QSSELTKWYKGLCLLEQI 310

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

RGD|1308509 Hbs1l "Hbs1-like (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 48/78 (61%), Positives = 60/78 (76%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENLT+ S
Sbjct:   392 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRS 451

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:   452 QSSDLTKWYKGLCLLEQI 469

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q6AXM7 Hbs1l "HBS1-like protein" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 48/78 (61%), Positives = 60/78 (76%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENLT+ S
Sbjct:   392 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRS 451

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:   452 QSSDLTKWYKGLCLLEQI 469

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|H0YDX7 HBS1L "HBS1-like protein" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct:   267 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRS 326

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:   327 QSSELTKWYKGLCLLEQI 344

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1N1V0 HBS1L "HBS1-like protein" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query:    13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
             GV QL V +NK+D V+W Q+RFQEI  KLG FLKQAGF++SD+ ++P SGL+GENL T S
Sbjct:   399 GVTQLAVAVNKMDQVNWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRS 458

Query:    73 QVPALTSWYSGPCLLDVI 90
             Q   LT WY G CLL+ I
Sbjct:   459 QSSELTKWYKGLCLLEQI 476

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69ZS7	HBS1L_MOUSE	No assigned EC number	0.6153	0.8041	0.1143	yes	N/A
Q6AXM7	HBS1L_RAT	No assigned EC number	0.6153	0.8041	0.1148	yes	N/A
Q5R6Y0	HBS1L_PONAB	No assigned EC number	0.6025	0.8041	0.1140	yes	N/A
Q2KHZ2	HBS1L_BOVIN	No assigned EC number	0.6153	0.8041	0.1137	yes	N/A
Q9Y450	HBS1L_HUMAN	No assigned EC number	0.6153	0.8041	0.1140	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	97
cd01883	219	cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1	4e-34
COG5256	428	COG5256, TEF1, Translation elongation factor EF-1a	3e-26
PRK12317	425	PRK12317, PRK12317, elongation factor 1-alpha; Rev	3e-24
TIGR00483	426	TIGR00483, EF-1_alpha, translation elongation fact	2e-20
cd04166	209	cd04166, CysN_ATPS, CysN, together with protein Cy	3e-19
PTZ00141	446	PTZ00141, PTZ00141, elongation factor 1- alpha; Pr	1e-17
COG2895	431	COG2895, CysN, GTPases - Sulfate adenylate transfe	1e-17
PRK05124	474	PRK05124, cysN, sulfate adenylyltransferase subuni	2e-16
PRK05506	632	PRK05506, PRK05506, bifunctional sulfate adenylylt	4e-16
TIGR02034	406	TIGR02034, CysN, sulfate adenylyltransferase, larg	1e-13
PLN00043	447	PLN00043, PLN00043, elongation factor 1-alpha; Pro	4e-11
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	4e-08
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	1e-04

>gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family

 Score =  116 bits (292), Expect = 4e-34
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 5/80 (6%)

Query: 13  GVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           GV QL V +NK+D V+  WSQ+R+ EI  K+  FLK+ G+   D+ ++P SG TG+NL  
Sbjct: 136 GVKQLIVAVNKMDDVTVNWSQERYDEIKKKVSPFLKKVGYNPKDVPFIPISGFTGDNLIE 195

Query: 71  PSQVPALTSWYSGPCLLDVI 90
            S+      WY GP LL+ +
Sbjct: 196 KSE---NMPWYKGPTLLEAL 212

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219

>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 99.3 bits (248), Expect = 3e-26
 Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+ QL V +NK+D VSW ++RF+EIV+++   LK  G+   D+ ++P SG  G+NLT  S
Sbjct: 144 GIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203

Query: 73  QVPALTSWYSGPCLLDVI 90
           +      WY GP LL+ +
Sbjct: 204 EN---MPWYKGPTLLEAL 218

Length = 428

>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed

 Score = 93.8 bits (234), Expect = 3e-24
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+NQL V INK+D V++ + R++E+  ++   LK  G++  DI ++P S   G+N+   S
Sbjct: 138 GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197

Query: 73  QVPALTSWYSGPCLLDVI 90
           +      WY+GP LL+ +
Sbjct: 198 EN---MPWYNGPTLLEAL 212

Length = 425

>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha

 Score = 83.4 bits (206), Expect = 2e-20
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+NQL V INK+D+V++ ++ F+ I  ++   +K+ G+    + ++P S   G+N+   S
Sbjct: 140 GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199

Query: 73  QVPALTSWYSGPCLLDVI 90
           +    T WY G  LL+ +
Sbjct: 200 EN---TPWYKGKTLLEAL 214

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426

>gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex

 Score = 77.6 bits (192), Expect = 3e-19
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+  + V +NK+D V + ++ F+EI     AF    G    DI ++P S L G+N+ + S
Sbjct: 130 GIRHVVVAVNKMDLVDYDEEVFEEIKADYLAFAASLGIE--DITFIPISALEGDNVVSRS 187

Query: 73  QVPALTSWYSGPCLLDV 89
                  WY GP LL+ 
Sbjct: 188 ---ENMPWYKGPTLLEH 201

CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209

>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional

 Score = 75.9 bits (187), Expect = 1e-17
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 13  GVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           GV Q+ V INK+D  TV++SQ+R+ EI  ++ A+LK+ G+    + ++P SG  G+N+  
Sbjct: 144 GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203

Query: 71  PSQVPALTSWYSGPCLLDVI 90
            S       WY GP LL+ +
Sbjct: 204 KS---DNMPWYKGPTLLEAL 220

Length = 446

>gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 5/81 (6%)

Query: 9   SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
           +++ G+  + V +NK+D V +S++ F+ IV    AF  Q G +  D+ ++P S L G+N+
Sbjct: 134 ASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLK--DVRFIPISALLGDNV 191

Query: 69  TTPSQVPALTSWYSGPCLLDV 89
            + S       WY GP LL++
Sbjct: 192 VSKS---ENMPWYKGPTLLEI 209

Length = 431

>gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+  L V +NK+D V +S++ F+ I      F +Q    + DI +VP S L G+N+ + S
Sbjct: 159 GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLP-GNLDIRFVPLSALEGDNVVSQS 217

Query: 73  QVPALTSWYSGPCLLDV 89
                  WYSGP LL+V
Sbjct: 218 ---ESMPWYSGPTLLEV 231

Length = 474

>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+  + + +NK+D V + Q+ F EIV    AF  + G    D+ ++P S L G+N+ T S
Sbjct: 156 GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRS 213

Query: 73  QVPALTSWYSGPCLLD 88
              A   WY GP LL+
Sbjct: 214 ---ARMPWYEGPSLLE 226

Length = 632

>gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 9   SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
           +++ G+  + + +NK+D V + ++ F+ I     AF +Q GFR  D+ ++P S L G+N+
Sbjct: 128 ASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFR--DVTFIPLSALKGDNV 185

Query: 69  TTPSQVPALTSWYSGPCLLDVI 90
            + S       WYSGP LL+++
Sbjct: 186 VSRS---ESMPWYSGPTLLEIL 204

Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406

>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional

 Score = 57.0 bits (137), Expect = 4e-11
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)

Query: 13  GVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           GV Q+    NK+D  T  +S+ R+ EIV ++ ++LK+ G+    I +VP SG  G+N+  
Sbjct: 144 GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203

Query: 71  PSQVPALTSWYSGPCLLDVI 90
            S       WY GP LL+ +
Sbjct: 204 RS---TNLDWYKGPTLLEAL 220

Length = 447

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 19  VVINKLDTVSWSQDRFQEIVTKL-GAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           V INK+D V       +E+V ++    L++ GF    +  VP S LTGE +  
Sbjct: 123 VFINKIDRVD--DAELEEVVEEISRELLEKYGFGGETVPVVPGSALTGEGIDE 173

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 19  VVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR---DSDIEYVPCSGLTGE 66
           V +NK+D V   ++ F E++ ++   LK  GF      D+  +P S LTGE
Sbjct: 119 VAVNKIDRVG--EEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGE 167

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.92
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.9
KOG0458|consensus	603		99.86
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.8
PTZ00141	446	elongation factor 1- alpha; Provisional	99.79
PLN00043	447	elongation factor 1-alpha; Provisional	99.78
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.75
PRK12317	425	elongation factor 1-alpha; Reviewed	99.7
KOG0459|consensus	501		99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.69
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.68
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.67
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.66
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.62
CHL00071	409	tufA elongation factor Tu	99.42
PLN03126	478	Elongation factor Tu; Provisional	99.35
PRK00049	396	elongation factor Tu; Reviewed	99.32
PRK12735	396	elongation factor Tu; Reviewed	99.27
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.2
PRK12736	394	elongation factor Tu; Reviewed	99.16
PLN03127	447	Elongation factor Tu; Provisional	98.97
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.93
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.87
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.72
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.65
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.62
KOG0460|consensus	449		98.53
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.5
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.47
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.46
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.39
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.32
COG1160	444	Predicted GTPases [General function prediction onl	98.32
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.31
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.29
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.28
KOG1145|consensus	683		98.27
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.26
cd00881	189	GTP_translation_factor GTP translation factor fami	98.19
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.19
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.17
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.07
PRK00093	435	GTP-binding protein Der; Reviewed	97.98
PRK04004	586	translation initiation factor IF-2; Validated	97.97
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.9
PRK05306	787	infB translation initiation factor IF-2; Validated	97.85
PRK14845	1049	translation initiation factor IF-2; Provisional	97.81
PRK03003	472	GTP-binding protein Der; Reviewed	97.79
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.76
PRK09866	741	hypothetical protein; Provisional	97.75
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.72
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.71
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.71
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.68
COG1159	298	Era GTPase [General function prediction only]	97.68
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.68
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.67
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.67
PRK15467	158	ethanolamine utilization protein EutP; Provisional	97.65
PRK04213	201	GTP-binding protein; Provisional	97.62
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.6
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.57
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.57
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.56
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.56
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.54
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.54
KOG0461|consensus	522		97.53
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.53
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.52
KOG0466|consensus	466		97.52
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.5
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.48
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.48
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.47
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	97.47
PRK00089	292	era GTPase Era; Reviewed	97.44
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.44
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.43
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.42
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	97.42
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.42
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	97.42
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	97.4
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.4
CHL00189	742	infB translation initiation factor 2; Provisional	97.39
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.36
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.36
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.35
COG1162	301	Predicted GTPases [General function prediction onl	97.33
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.33
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.32
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	97.3
PRK10218	607	GTP-binding protein; Provisional	97.3
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	97.28
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.28
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.28
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.28
PRK12289	352	GTPase RsgA; Reviewed	97.27
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.25
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.25
PRK13796	365	GTPase YqeH; Provisional	97.25
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.24
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	97.24
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.24
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	97.23
PRK12296	500	obgE GTPase CgtA; Reviewed	97.23
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	97.23
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	97.22
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.22
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	97.22
PRK12299	335	obgE GTPase CgtA; Reviewed	97.2
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.2
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.2
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	97.18
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.17
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.15
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	97.14
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	97.13
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.12
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	97.11
PLN00223	181	ADP-ribosylation factor; Provisional	97.1
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	97.1
PRK01889	356	GTPase RsgA; Reviewed	97.1
PRK12297	424	obgE GTPase CgtA; Reviewed	97.1
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	97.1
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	97.08
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.08
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.08
PRK12298	390	obgE GTPase CgtA; Reviewed	97.07
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.07
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.07
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	97.04
PRK12288	347	GTPase RsgA; Reviewed	97.03
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.02
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.02
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.02
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	97.01
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	97.0
cd01881	176	Obg_like The Obg-like subfamily consists of five w	97.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.99
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	96.98
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	96.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	96.97
PRK15494	339	era GTPase Era; Provisional	96.96
PRK00098	298	GTPase RsgA; Reviewed	96.95
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	96.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.94
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	96.93
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	96.93
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	96.93
PTZ00133	182	ADP-ribosylation factor; Provisional	96.92
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	96.92
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	96.9
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.9
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	96.89
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	96.89
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	96.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.85
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	96.85
KOG1489|consensus	366		96.85
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	96.85
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	96.84
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	96.83
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	96.82
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	96.82
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.82
COG0536	369	Obg Predicted GTPase [General function prediction	96.82
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	96.81
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	96.81
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	96.8
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	96.8
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	96.8
PRK13768	253	GTPase; Provisional	96.8
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	96.79
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	96.79
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.75
PRK05433	600	GTP-binding protein LepA; Provisional	96.75
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	96.73
PTZ00099	176	rab6; Provisional	96.73
smart00178	184	SAR Sar1p-like members of the Ras-family of small	96.71
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	96.71
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	96.65
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	96.63
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	96.63
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	96.63
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.62
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	96.61
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	96.61
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.58
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.52
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	96.51
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	96.51
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	96.51
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	96.49
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.48
KOG0462|consensus	650		96.45
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	96.44
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	96.44
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.43
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	96.42
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	96.42
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	96.41
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	96.38
PTZ00369	189	Ras-like protein; Provisional	96.37
PLN03118	211	Rab family protein; Provisional	96.35
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	96.35
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	96.33
COG1160	444	Predicted GTPases [General function prediction onl	96.31
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	96.31
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	96.28
KOG1144|consensus	1064		96.24
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	96.22
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	96.13
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.13
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	96.09
PLN03108	210	Rab family protein; Provisional	96.07
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	96.06
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	96.03
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	96.03
PRK03003	472	GTP-binding protein Der; Reviewed	96.03
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	96.02
cd01896	233	DRG The developmentally regulated GTP-binding prot	96.01
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	95.97
PRK09563	287	rbgA GTPase YlqF; Reviewed	95.93
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.92
PRK00007	693	elongation factor G; Reviewed	95.92
PLN03110	216	Rab GTPase; Provisional	95.86
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	95.85
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	95.83
PRK09602	396	translation-associated GTPase; Reviewed	95.82
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	95.75
PRK00093	435	GTP-binding protein Der; Reviewed	95.73
KOG0052|consensus	391		95.7
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	95.68
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	95.64
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.54
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	95.47
PRK12739	691	elongation factor G; Reviewed	95.46
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	95.44
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	95.43
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	95.4
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	95.37
KOG0078|consensus	207		95.34
KOG3905|consensus	473		95.28
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.17
COG2262	411	HflX GTPases [General function prediction only]	94.96
COG0218	200	Predicted GTPase [General function prediction only	94.89
KOG1143|consensus	591		94.76
PRK11058	426	GTPase HflX; Provisional	94.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	94.22
COG2229	187	Predicted GTPase [General function prediction only	94.05
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	93.97
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	93.96
COG1163	365	DRG Predicted GTPase [General function prediction	93.95
KOG0081|consensus	219		93.94
KOG0092|consensus	200		93.78
KOG0076|consensus	197		93.78
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	93.68
KOG0073|consensus	185		93.57
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	93.55
PRK07560	731	elongation factor EF-2; Reviewed	93.46
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	93.42
COG0486	454	ThdF Predicted GTPase [General function prediction	93.4
KOG0463|consensus	641		91.96
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	91.75
PF08438	109	MMR_HSR1_C: GTPase of unknown function C-terminal;	91.63
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	91.38
KOG0098|consensus	216		91.09
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	91.09
KOG2484|consensus	435		91.04
KOG0094|consensus	221		90.88
KOG0072|consensus	182		90.68
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	90.48
KOG1532|consensus	366		90.45
KOG0394|consensus	210		89.63
KOG0093|consensus	193		89.47
KOG0091|consensus	213		89.39
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	89.15
PLN00116	843	translation elongation factor EF-2 subunit; Provis	88.83
KOG1490|consensus	620		88.55
KOG0097|consensus	215		88.34
KOG0070|consensus	181		87.99
KOG0395|consensus	196		87.87
PTZ00416	836	elongation factor 2; Provisional	87.48
KOG0086|consensus	214		87.38
KOG0084|consensus	205		87.07
KOG4146|consensus	101		87.06
TIGR00503	527	prfC peptide chain release factor 3. This translat	86.52
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	86.36
COG0523	323	Putative GTPases (G3E family) [General function pr	86.28
KOG0087|consensus	222		85.8
KOG1424|consensus	562		85.59
cd04105	203	SR_beta Signal recognition particle receptor, beta	85.33
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	84.77
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	84.45
PRK00741	526	prfC peptide chain release factor 3; Provisional	84.43
COG1084	346	Predicted GTPase [General function prediction only	84.11
KOG1423|consensus	379		84.05
KOG0088|consensus	218		83.93
COG1161	322	Predicted GTPases [General function prediction onl	83.08
KOG0083|consensus	192		81.92
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	81.69
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	81.28
KOG0467|consensus	887		80.47

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.4e-25  Score=170.71  Aligned_cols=84  Identities=39%  Similarity=0.795  Sum_probs=79.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      |++|||+++||+|||||.++|+++||++++.++..+++..||++++++||||||+.|+|+.+.+.+   ++||+||||+|
T Consensus       140 a~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~---~pWY~GpTLle  216 (428)
T COG5256         140 ARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSEN---MPWYKGPTLLE  216 (428)
T ss_pred             HHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcC---CcCccCChHHH
Confidence            577999999999999999999999999999999999999999988999999999999999999966   99999999999


Q ss_pred             HhccccC
Q psy15201         89 VIGLSGL   95 (97)
Q Consensus        89 ~ld~~~~   95 (97)
                      |||.++.
T Consensus       217 aLd~~~~  223 (428)
T COG5256         217 ALDQLEP  223 (428)
T ss_pred             HHhccCC
Confidence            9997754

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.1e-23  Score=158.56  Aligned_cols=83  Identities=33%  Similarity=0.705  Sum_probs=77.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      +.+|||+|+|++|||||+++|++++|++|+++...|.+++++.  ...+||+||+.|+|+..+|.+   |+||+||||+|
T Consensus       134 ~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~--~~~~IPiSAl~GDNV~~~s~~---mpWY~GptLLe  208 (431)
T COG2895         134 ASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLK--DVRFIPISALLGDNVVSKSEN---MPWYKGPTLLE  208 (431)
T ss_pred             HHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCC--cceEEechhccCCcccccccC---CCcccCccHHH
Confidence            4579999999999999999999999999999999999999884  569999999999999999987   99999999999


Q ss_pred             HhccccCC
Q psy15201         89 VIGLSGLS   96 (97)
Q Consensus        89 ~ld~~~~~   96 (97)
                      .|+++++.
T Consensus       209 ~LE~v~i~  216 (431)
T COG2895         209 ILETVEIA  216 (431)
T ss_pred             HHhhcccc
Confidence            99998763

>KOG0458|consensus

Probab=99.86  E-value=3.9e-22  Score=156.57  Aligned_cols=86  Identities=49%  Similarity=0.833  Sum_probs=79.0

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH-HHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll   87 (97)
                      ++.|||.++||+|||||+++|+++||++|+..+..|| ++.||...++.+||||++.|+|+.+.+....+.+||+||||+
T Consensus       310 lr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL  389 (603)
T KOG0458|consen  310 LRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLL  389 (603)
T ss_pred             HHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHH
Confidence            4569999999999999999999999999999999999 778998778899999999999999986655778999999999


Q ss_pred             HHhcccc
Q psy15201         88 DVIGLSG   94 (97)
Q Consensus        88 e~ld~~~   94 (97)
                      ++||++.
T Consensus       390 ~~id~~~  396 (603)
T KOG0458|consen  390 SQIDSFK  396 (603)
T ss_pred             HHHhhcc
Confidence            9999864

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.80  E-value=3.1e-19  Score=125.95  Aligned_cols=84  Identities=42%  Similarity=0.807  Sum_probs=74.1

Q ss_pred             eccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201         10 AVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL   87 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll   87 (97)
                      +.+|++++|+++||||++  ++++++++++.++++.+++..++.....+++|+||++|.|+.+++.+   ++||+|+||+
T Consensus       133 ~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~---~~w~~g~~l~  209 (219)
T cd01883         133 RTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSEN---MPWYKGPTLL  209 (219)
T ss_pred             HHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCC---CCCccCCcHH
Confidence            346889999999999998  35678899999999988888887656789999999999999999987   9999999999


Q ss_pred             HHhccccCC
Q psy15201         88 DVIGLSGLS   96 (97)
Q Consensus        88 e~ld~~~~~   96 (97)
                      |+|+++..+
T Consensus       210 ~~l~~~~~~  218 (219)
T cd01883         210 EALDSLEPP  218 (219)
T ss_pred             HHHhCCCCC
Confidence            999998754

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.79  E-value=2.8e-19  Score=138.26  Aligned_cols=84  Identities=37%  Similarity=0.718  Sum_probs=76.4

Q ss_pred             eeccCCCeEEEEEEcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCch
Q psy15201          9 SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL   86 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D--~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tl   86 (97)
                      |+.+|++++|++|||||  +++|++++++++.++++.+++..++++.++++||+||++|+|+.+++..   ++||+|+||
T Consensus       140 ~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~---~~Wy~G~tL  216 (446)
T PTZ00141        140 AFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDN---MPWYKGPTL  216 (446)
T ss_pred             HHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCC---CcccchHHH
Confidence            45689999999999999  6789999999999999999999998766799999999999999988866   999999999


Q ss_pred             HHHhccccC
Q psy15201         87 LDVIGLSGL   95 (97)
Q Consensus        87 le~ld~~~~   95 (97)
                      +++|++++.
T Consensus       217 ~~~l~~~~~  225 (446)
T PTZ00141        217 LEALDTLEP  225 (446)
T ss_pred             HHHHhCCCC
Confidence            999998753

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.78  E-value=3.1e-19  Score=138.04  Aligned_cols=83  Identities=34%  Similarity=0.675  Sum_probs=75.7

Q ss_pred             eccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201         10 AVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL   87 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll   87 (97)
                      +.+|++++|+++||||++  +|++++++++.++++.++++.+|.+.++++||+||++|+|+.+++..   ++||+|+||+
T Consensus       141 ~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~---~~Wy~g~tLl  217 (447)
T PLN00043        141 FTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTN---LDWYKGPTLL  217 (447)
T ss_pred             HHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccC---CcccchHHHH
Confidence            468999999999999987  57889999999999999999998777799999999999999998876   9999999999


Q ss_pred             HHhccccC
Q psy15201         88 DVIGLSGL   95 (97)
Q Consensus        88 e~ld~~~~   95 (97)
                      ++||+++.
T Consensus       218 ~~l~~i~~  225 (447)
T PLN00043        218 EALDQINE  225 (447)
T ss_pred             HHHhhcCC
Confidence            99998753

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.75  E-value=7.4e-18  Score=118.01  Aligned_cols=80  Identities=36%  Similarity=0.703  Sum_probs=69.5

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHHHh
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLDVI   90 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle~l   90 (97)
                      ..|++++|+++||+|++++++++++++..+++.+++..++.  ..+++|+||++|.|+.+.+.+   ++||+|+||+|||
T Consensus       127 ~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~~---~~w~~g~~~~~~~  201 (208)
T cd04166         127 LLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSEN---MPWYSGPTLLEHL  201 (208)
T ss_pred             HcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCCC---CCCCCCCcHHHHH
Confidence            45777889999999998777778888888998888877763  478999999999999999876   9999999999999


Q ss_pred             ccccC
Q psy15201         91 GLSGL   95 (97)
Q Consensus        91 d~~~~   95 (97)
                      |+++.
T Consensus       202 ~~~~~  206 (208)
T cd04166         202 ETVPI  206 (208)
T ss_pred             hcCCC
Confidence            99874

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.70  E-value=5.7e-17  Score=124.03  Aligned_cols=84  Identities=33%  Similarity=0.699  Sum_probs=74.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ++.+|++++|+++||+|++++++++++++.++++.+++..++.+...+++|+||++|+|+.+++.+   ++||+|+||++
T Consensus       134 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~---~~wy~g~~L~~  210 (425)
T PRK12317        134 ARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSEN---MPWYNGPTLLE  210 (425)
T ss_pred             HHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccC---CCcccHHHHHH
Confidence            345788889999999999987788899999999999988888655689999999999999999876   99999999999


Q ss_pred             HhccccC
Q psy15201         89 VIGLSGL   95 (97)
Q Consensus        89 ~ld~~~~   95 (97)
                      +|++++.
T Consensus       211 ~l~~~~~  217 (425)
T PRK12317        211 ALDNLKP  217 (425)
T ss_pred             HHhcCCC
Confidence            9998764

>KOG0459|consensus

Probab=99.70  E-value=3.3e-17  Score=125.29  Aligned_cols=84  Identities=40%  Similarity=0.793  Sum_probs=75.8

Q ss_pred             eeccCCCeEEEEEEcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCC-CceEEEeeeccCCCCCCCCCCCCCCCccccCc
Q psy15201          9 SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDS-DIEYVPCSGLTGENLTTPSQVPALTSWYSGPC   85 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D--~v~~~~~~~~~i~~~l~~~l~~~~~~~~-~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~t   85 (97)
                      |+++||+++|++|||||  +++|+++|++++++.+..+++.++|++. +..++|+|+++|.|+.+...  ..|+||+|++
T Consensus       212 akt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~  289 (501)
T KOG0459|consen  212 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPI  289 (501)
T ss_pred             HHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCc
Confidence            57899999999999999  7889999999999999999999998754 58999999999999977654  3499999999


Q ss_pred             hHHHhcccc
Q psy15201         86 LLDVIGLSG   94 (97)
Q Consensus        86 lle~ld~~~   94 (97)
                      +++.||+++
T Consensus       290 fl~~ld~l~  298 (501)
T KOG0459|consen  290 FLEYLDELP  298 (501)
T ss_pred             cceehhccC
Confidence            999999865

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.69  E-value=8.2e-17  Score=123.05  Aligned_cols=82  Identities=32%  Similarity=0.701  Sum_probs=72.2

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ++.+|++++|+++||||++++++++++++++++..+++..++  .+.+++||||++|+|+.+++..   ++||+|+||++
T Consensus       128 ~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~  202 (406)
T TIGR02034       128 ASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGF--RDVTFIPLSALKGDNVVSRSES---MPWYSGPTLLE  202 (406)
T ss_pred             HHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCC--CCccEEEeecccCCCCcccccC---CCccchhHHHH
Confidence            345799999999999999987888999999999998888776  3679999999999999988765   99999999999


Q ss_pred             HhccccC
Q psy15201         89 VIGLSGL   95 (97)
Q Consensus        89 ~ld~~~~   95 (97)
                      +|++++.
T Consensus       203 ~L~~~~~  209 (406)
T TIGR02034       203 ILETVEV  209 (406)
T ss_pred             HHHhcCC
Confidence            9998754

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.68  E-value=1.4e-16  Score=111.42  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=68.3

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc-cCchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS-GPCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~-g~tll   87 (97)
                      ++.+|++++|+++||||+++ ++++++++.+++..++++.++++++++|+|+||++|.|+.+   .   ++||+ |+||+
T Consensus       113 ~~~~~~~~iIvviNK~D~~~-~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~---~---~~w~~~~~~l~  185 (195)
T cd01884         113 ARQVGVPYIVVFLNKADMVD-DEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD---P---NKWVKKILELL  185 (195)
T ss_pred             HHHcCCCcEEEEEeCCCCCC-cHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC---C---CcchhcHhHHH
Confidence            44578888999999999985 57778888899999999999987789999999999999865   2   79998 79999


Q ss_pred             HHhcccc
Q psy15201         88 DVIGLSG   94 (97)
Q Consensus        88 e~ld~~~   94 (97)
                      ++||+..
T Consensus       186 ~~l~~~~  192 (195)
T cd01884         186 DALDSYI  192 (195)
T ss_pred             HHHHhCC
Confidence            9999764

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.67  E-value=1.9e-16  Score=121.34  Aligned_cols=84  Identities=30%  Similarity=0.635  Sum_probs=74.7

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ++.+|++++|+++||+|++++++++++++.++++.+++..++++...+++|+||++|.|+.+.+.+   ++||+|++|++
T Consensus       136 ~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~---~~w~~g~~l~~  212 (426)
T TIGR00483       136 ARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSEN---TPWYKGKTLLE  212 (426)
T ss_pred             HHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccC---CccccchHHHH
Confidence            345788899999999999988888999999999999998887666789999999999999998876   89999999999


Q ss_pred             HhccccC
Q psy15201         89 VIGLSGL   95 (97)
Q Consensus        89 ~ld~~~~   95 (97)
                      +|++++.
T Consensus       213 ~l~~~~~  219 (426)
T TIGR00483       213 ALDALEP  219 (426)
T ss_pred             HHhcCCC
Confidence            9998753

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.66  E-value=2.5e-16  Score=122.67  Aligned_cols=83  Identities=35%  Similarity=0.633  Sum_probs=72.2

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      +..+|++++|+++||||++++++++++++++++..+++..++. ...+++|+||++|+|+.++++.   ++||+|+||++
T Consensus       155 ~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~---~~wy~G~tLl~  230 (474)
T PRK05124        155 ATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSES---MPWYSGPTLLE  230 (474)
T ss_pred             HHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCccccccc---ccccchhhHHH
Confidence            4568899999999999999878889999999998888776642 3689999999999999998766   89999999999


Q ss_pred             HhccccC
Q psy15201         89 VIGLSGL   95 (97)
Q Consensus        89 ~ld~~~~   95 (97)
                      +|+.++.
T Consensus       231 ~L~~i~~  237 (474)
T PRK05124        231 VLETVDI  237 (474)
T ss_pred             HHhhcCC
Confidence            9998753

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.62  E-value=1.2e-15  Score=121.89  Aligned_cols=82  Identities=33%  Similarity=0.690  Sum_probs=72.5

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ++.+|++++|+++||||++++++++++++..++..+++..++  ++.+++||||++|.|+.+.+..   ++||.|+||++
T Consensus       152 ~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~  226 (632)
T PRK05506        152 ASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSAR---MPWYEGPSLLE  226 (632)
T ss_pred             HHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCC--CCccEEEEecccCCCccccccC---CCcccHhHHHH
Confidence            345789999999999999987888999999999988888887  4578999999999999988765   89999999999


Q ss_pred             HhccccC
Q psy15201         89 VIGLSGL   95 (97)
Q Consensus        89 ~ld~~~~   95 (97)
                      +|+.++.
T Consensus       227 ~l~~~~~  233 (632)
T PRK05506        227 HLETVEI  233 (632)
T ss_pred             HHhcCCC
Confidence            9998764

>CHL00071 tufA elongation factor Tu

Probab=99.42  E-value=3.3e-13  Score=103.27  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=68.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCC--CCCCCcccc-Cc
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYSG-PC   85 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~--~~~~~W~~g-~t   85 (97)
                      ++.+|++++|+++||||+++ .+++++.+++++..+++..+++.+..|++|+||++|.|+.+++.+  .+.++||++ ++
T Consensus       123 ~~~~g~~~iIvvvNK~D~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~  201 (409)
T CHL00071        123 AKQVGVPNIVVFLNKEDQVD-DEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYN  201 (409)
T ss_pred             HHHcCCCEEEEEEEccCCCC-HHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHH
Confidence            45689988999999999986 466788888999999999888766799999999999999876542  112589985 99


Q ss_pred             hHHHhccc
Q psy15201         86 LLDVIGLS   93 (97)
Q Consensus        86 lle~ld~~   93 (97)
                      |+++|++.
T Consensus       202 ll~~l~~~  209 (409)
T CHL00071        202 LMDAVDSY  209 (409)
T ss_pred             HHHHHHhh
Confidence            99999874

>PLN03126 Elongation factor Tu; Provisional

Probab=99.35  E-value=2e-12  Score=101.14  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=68.1

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCC--CCCCCccc-cCc
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYS-GPC   85 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~--~~~~~W~~-g~t   85 (97)
                      +..+|++++|+++||||+++ .+++++.+.++++.+++..+|+.++++++|+||++|.|+...+..  .+..+||+ +++
T Consensus       192 ~~~~gi~~iIvvvNK~Dl~~-~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~  270 (478)
T PLN03126        192 AKQVGVPNMVVFLNKQDQVD-DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYE  270 (478)
T ss_pred             HHHcCCCeEEEEEecccccC-HHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHH
Confidence            55689999999999999996 577788888999999999988767899999999999987532211  12258998 589


Q ss_pred             hHHHhccc
Q psy15201         86 LLDVIGLS   93 (97)
Q Consensus        86 lle~ld~~   93 (97)
                      |+++|+++
T Consensus       271 Ll~~l~~~  278 (478)
T PLN03126        271 LMDAVDSY  278 (478)
T ss_pred             HHHHHHHh
Confidence            99999863

>PRK00049 elongation factor Tu; Reviewed

Probab=99.32  E-value=4.1e-12  Score=96.99  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=64.2

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll   87 (97)
                      ++.+|++.+|+++||||+++ ++++++.+..+++.+++..++++++.|++|+||++|.|-   +..   ++||+| ++|+
T Consensus       123 ~~~~g~p~iiVvvNK~D~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~---~~~---~~w~~~~~~ll  195 (396)
T PRK00049        123 ARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEG---DDD---EEWEKKILELM  195 (396)
T ss_pred             HHHcCCCEEEEEEeecCCcc-hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCC---CCc---ccccccHHHHH
Confidence            45588887788999999986 566788888899999998888667799999999999872   333   899976 8999


Q ss_pred             HHhcc
Q psy15201         88 DVIGL   92 (97)
Q Consensus        88 e~ld~   92 (97)
                      ++|++
T Consensus       196 ~~l~~  200 (396)
T PRK00049        196 DAVDS  200 (396)
T ss_pred             HHHHh
Confidence            99987

>PRK12735 elongation factor Tu; Reviewed

Probab=99.27  E-value=1.1e-11  Score=94.62  Aligned_cols=78  Identities=19%  Similarity=0.268  Sum_probs=64.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll   87 (97)
                      ++.+|++.+|+++||||+++ ++++++.+.++++.+++.+++.+++.+++|+||++|.|..   ..   ++||++ ++|+
T Consensus       123 ~~~~gi~~iivvvNK~Dl~~-~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~---~~---~~w~~~~~~Ll  195 (396)
T PRK12735        123 ARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD---DD---EEWEAKILELM  195 (396)
T ss_pred             HHHcCCCeEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCC---CC---CcccccHHHHH
Confidence            44579988888999999986 5667888888999999988886567999999999999962   22   789975 9999


Q ss_pred             HHhccc
Q psy15201         88 DVIGLS   93 (97)
Q Consensus        88 e~ld~~   93 (97)
                      ++|++.
T Consensus       196 ~~l~~~  201 (396)
T PRK12735        196 DAVDSY  201 (396)
T ss_pred             HHHHhc
Confidence            999863

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.20  E-value=3.6e-11  Score=91.59  Aligned_cols=76  Identities=20%  Similarity=0.257  Sum_probs=61.8

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc-cCchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS-GPCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~-g~tll   87 (97)
                      ++.+|++++|+++||||+++ ++++++.+.++++.+++..++..++++++|+||++|.+-     .   ++||+ +++|+
T Consensus       123 ~~~~gi~~iIvvvNK~Dl~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g-----~---~~~~~~~~~ll  193 (394)
T TIGR00485       123 ARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG-----D---AEWEAKILELM  193 (394)
T ss_pred             HHHcCCCEEEEEEEecccCC-HHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccccc-----C---CchhHhHHHHH
Confidence            45689998889999999986 456777788899999988887655689999999998652     1   58997 49999


Q ss_pred             HHhccc
Q psy15201         88 DVIGLS   93 (97)
Q Consensus        88 e~ld~~   93 (97)
                      ++|+++
T Consensus       194 ~~l~~~  199 (394)
T TIGR00485       194 DAVDEY  199 (394)
T ss_pred             HHHHhc
Confidence            999864

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.16  E-value=7.8e-11  Score=89.87  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=61.6

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll   87 (97)
                      ++.+|++++|+++||||+++ ++++++.+.++++.+++..++.+++.+++|+||++|.+-     .   .+||.+ .+|+
T Consensus       123 ~~~~g~~~~IvviNK~D~~~-~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~-----~---~~~~~~i~~Ll  193 (394)
T PRK12736        123 ARQVGVPYLVVFLNKVDLVD-DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEG-----D---PKWEDAIMELM  193 (394)
T ss_pred             HHHcCCCEEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccC-----C---CcchhhHHHHH
Confidence            45589988999999999985 466777788899999998888666789999999999642     1   589965 8999


Q ss_pred             HHhcc
Q psy15201         88 DVIGL   92 (97)
Q Consensus        88 e~ld~   92 (97)
                      ++|+.
T Consensus       194 ~~l~~  198 (394)
T PRK12736        194 DAVDE  198 (394)
T ss_pred             HHHHH
Confidence            98875

>PLN03127 Elongation factor Tu; Provisional

Probab=98.97  E-value=1.4e-09  Score=84.61  Aligned_cols=76  Identities=24%  Similarity=0.281  Sum_probs=58.7

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc---CCCCCCCCCCCCCCCccccCc
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT---GENLTTPSQVPALTSWYSGPC   85 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~---G~ni~~~~~~~~~~~W~~g~t   85 (97)
                      ++.+|++++|+++||||+++ ++++++.+.++++.+++..+++.+.+|++|+||+.   |.|..        ..|..+++
T Consensus       172 ~~~~gip~iIvviNKiDlv~-~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~--------~~~~~i~~  242 (447)
T PLN03127        172 ARQVGVPSLVVFLNKVDVVD-DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE--------IGKNAILK  242 (447)
T ss_pred             HHHcCCCeEEEEEEeeccCC-HHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc--------cccchHHH
Confidence            55689988999999999996 45677777778888888888866679999999875   44421        24556789


Q ss_pred             hHHHhccc
Q psy15201         86 LLDVIGLS   93 (97)
Q Consensus        86 lle~ld~~   93 (97)
                      |+++|++.
T Consensus       243 Ll~~l~~~  250 (447)
T PLN03127        243 LMDAVDEY  250 (447)
T ss_pred             HHHHHHHh
Confidence            99998763

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.93  E-value=2.2e-09  Score=83.79  Aligned_cols=58  Identities=17%  Similarity=0.259  Sum_probs=46.0

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +..+|++++|+++||||+++  .++.++..++++.+++....  ...+++|+||++|+|+..
T Consensus       166 ~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~~  223 (460)
T PTZ00327        166 VEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNIDV  223 (460)
T ss_pred             HHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHHH
Confidence            45699999999999999984  56667777777777765432  468999999999999844

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.87  E-value=6.4e-09  Score=71.37  Aligned_cols=57  Identities=28%  Similarity=0.508  Sum_probs=46.3

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHH-HHHHHhCCCC-CCceEEEeeeccCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLG-AFLKQAGFRD-SDIEYVPCSGLTGENLT   69 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~-~~l~~~~~~~-~~~~iipiSA~~G~ni~   69 (97)
                      ++.++++ +|+++||||++   +.+++++.+++. .+++..+++. ...|++|+||++|.|+.
T Consensus       118 ~~~~~~p-~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~  176 (188)
T PF00009_consen  118 LRELGIP-IIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGID  176 (188)
T ss_dssp             HHHTT-S-EEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHH
T ss_pred             ccccccc-eEEeeeeccch---hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHH
Confidence            4567887 99999999998   678888888887 5777777764 36899999999999985

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=1.1e-08  Score=77.30  Aligned_cols=57  Identities=25%  Similarity=0.381  Sum_probs=49.0

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ..+|++++|++-||+|++  +.++..+-.+++.+|++..-.  ++.|||||||.++.|++.
T Consensus       136 eIigik~iiIvQNKIDlV--~~E~AlE~y~qIk~FvkGt~A--e~aPIIPiSA~~~~NIDa  192 (415)
T COG5257         136 EIIGIKNIIIVQNKIDLV--SRERALENYEQIKEFVKGTVA--ENAPIIPISAQHKANIDA  192 (415)
T ss_pred             hhhccceEEEEeccccee--cHHHHHHHHHHHHHHhccccc--CCCceeeehhhhccCHHH
Confidence            458999999999999999  578888888999999986543  578999999999999854

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.65  E-value=5.7e-08  Score=78.17  Aligned_cols=59  Identities=22%  Similarity=0.398  Sum_probs=49.0

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++.+|++++|||+||+|+++  +++++++++++..+++..++  ...+++|+||.+|.|+.+.
T Consensus        99 l~~lgi~~iIVVlNKiDlv~--~~~~~~v~~ei~~~l~~~~~--~~~~ii~VSA~tG~gI~~L  157 (614)
T PRK10512         99 LQLTGNPMLTVALTKADRVD--EARIAEVRRQVKAVLREYGF--AEAKLFVTAATEGRGIDAL  157 (614)
T ss_pred             HHHcCCCeEEEEEECCccCC--HHHHHHHHHHHHHHHHhcCC--CCCcEEEEeCCCCCCCHHH
Confidence            45689998999999999984  67888888899888877665  3579999999999998554

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.62  E-value=9.2e-08  Score=76.50  Aligned_cols=61  Identities=20%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      ++.+|++++|+++||+|+++  +++++++.+++..+++..++. ...+++|+||++|.|+.+..
T Consensus        98 l~~lgi~~iIVVlNK~Dlv~--~~~~~~~~~ei~~~l~~~~~~-~~~~ii~vSA~tG~GI~eL~  158 (581)
T TIGR00475        98 LDLLGIPHTIVVITKADRVN--EEEIKRTEMFMKQILNSYIFL-KNAKIFKTSAKTGQGIGELK  158 (581)
T ss_pred             HHHcCCCeEEEEEECCCCCC--HHHHHHHHHHHHHHHHHhCCC-CCCcEEEEeCCCCCCchhHH
Confidence            45689998999999999984  677777888888888776652 25799999999999997754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0460|consensus

Probab=98.53  E-value=1.9e-07  Score=71.22  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=60.7

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ||+.||+++||.+||.|+++ +++.++.+.-+++++|...+|+.++.|+|.-||+-.-.=.+++-.     --.-.-|++
T Consensus       165 ArQVGV~~ivvfiNKvD~V~-d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig-----~~aI~kLld  238 (449)
T KOG0460|consen  165 ARQVGVKHIVVFINKVDLVD-DPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIG-----LEAIEKLLD  238 (449)
T ss_pred             HHHcCCceEEEEEecccccC-CHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCcccc-----HHHHHHHHH
Confidence            78899999999999999997 688999999999999999999999999999888754322222211     001245778


Q ss_pred             Hhcc
Q psy15201         89 VIGL   92 (97)
Q Consensus        89 ~ld~   92 (97)
                      |+|+
T Consensus       239 avDs  242 (449)
T KOG0460|consen  239 AVDS  242 (449)
T ss_pred             HHhc
Confidence            8776

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.50  E-value=1.9e-07  Score=65.03  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=41.6

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +..+++++|+++||+|+++  ...+.+..++++.+++....  ...+++|+||++|+|+.+.
T Consensus       133 ~~~~~~~iiivvNK~Dl~~--~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~L  190 (203)
T cd01888         133 EIMGLKHIIIVQNKIDLVK--EEQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDVL  190 (203)
T ss_pred             HHcCCCcEEEEEEchhccC--HHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHHH
Confidence            3467788999999999984  44455555666666653321  2478999999999998654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=3.7e-07  Score=68.56  Aligned_cols=75  Identities=21%  Similarity=0.323  Sum_probs=60.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc-cCchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS-GPCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~-g~tll   87 (97)
                      +++.|++++|+.+||+|+++ ++++++.+..+++++|..++|+.++.||+--||+..-.-     .   .+|.. -..|+
T Consensus       123 arqvGvp~ivvflnK~Dmvd-d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~-----~---~~~~~~i~eLm  193 (394)
T COG0050         123 ARQVGVPYIVVFLNKVDMVD-DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEG-----D---AKWEAKIEELM  193 (394)
T ss_pred             hhhcCCcEEEEEEecccccC-cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcC-----C---cchHHHHHHHH
Confidence            67899999999999999998 799999999999999999999888999999888764321     1   34653 25566


Q ss_pred             HHhcc
Q psy15201         88 DVIGL   92 (97)
Q Consensus        88 e~ld~   92 (97)
                      +|+|+
T Consensus       194 ~avd~  198 (394)
T COG0050         194 DAVDS  198 (394)
T ss_pred             HHHHh
Confidence            77764

>cd04171 SelB SelB subfamily

Probab=98.46  E-value=3.6e-07  Score=59.83  Aligned_cols=57  Identities=25%  Similarity=0.373  Sum_probs=40.9

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..|++++|+++||+|+.+  +.+.....+++...++..+.  ...+++|+||.+|.|+.+.
T Consensus       101 ~~~~~~~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l  157 (164)
T cd04171         101 LLGIKRGLVVLTKADLVD--EDWLELVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEEL  157 (164)
T ss_pred             HhCCCcEEEEEECccccC--HHHHHHHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHHH
Confidence            357778999999999974  33445555666666654332  2479999999999998653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.39  E-value=7.5e-07  Score=68.32  Aligned_cols=58  Identities=24%  Similarity=0.414  Sum_probs=40.8

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++.+|++++|+++||+|+++  .+...+..+++..+++...  ....+++|+||++|+|+.+
T Consensus       129 l~~~gi~~iIVvvNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~  186 (406)
T TIGR03680       129 LEIIGIKNIVIVQNKIDLVS--KEKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDA  186 (406)
T ss_pred             HHHcCCCeEEEEEEccccCC--HHHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHH
Confidence            34688999999999999985  3333333455555554332  1357999999999999844

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.32  E-value=2.3e-06  Score=58.04  Aligned_cols=50  Identities=18%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~   69 (97)
                      .++++++||+|+.+  ++..++..++++..++..+   ...+++++||++|+|+.
T Consensus       130 ~pviiv~nK~D~~~--~~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       130 IPVLIVLTKADKLK--KSELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCEEEEEECcccCC--HHHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCCC
Confidence            36899999999974  4555666777777776543   23689999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.32  E-value=1.1e-06  Score=68.46  Aligned_cols=53  Identities=30%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||||+++.++...++.++++...+..++|    .|+++|||++|.++.+.
T Consensus       290 ~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~l  342 (444)
T COG1160         290 RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDKL  342 (444)
T ss_pred             CCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHHH
Confidence            468999999999976667888888999888877776    89999999999998654

>cd01889 SelB_euk SelB subfamily

Probab=98.31  E-value=1.1e-06  Score=60.32  Aligned_cols=57  Identities=23%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             cCCCeEEEEEEcCCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .|+ ++++++||+|+++..  +...+++++++...+...++  ...+++|+||++|.|+.+.
T Consensus       119 ~~~-~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~L  177 (192)
T cd01889         119 LCK-KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAEL  177 (192)
T ss_pred             cCC-CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHHH
Confidence            455 789999999998421  12234444444444433333  3579999999999999653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.29  E-value=1e-06  Score=62.80  Aligned_cols=60  Identities=27%  Similarity=0.369  Sum_probs=44.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC---------------------CCCceEEEeeeccCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR---------------------DSDIEYVPCSGLTGEN   67 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~---------------------~~~~~iipiSA~~G~n   67 (97)
                      +..+|++ +|+++||+|++  +++++.+..+++..+++..++.                     ...+|++++||.+|+|
T Consensus       134 l~~~~ip-~ivvvNK~D~~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G  210 (224)
T cd04165         134 ALALNIP-VFVVVTKIDLA--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG  210 (224)
T ss_pred             HHHcCCC-EEEEEECcccc--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC
Confidence            3457775 89999999997  4778888888888887643321                     1235999999999999


Q ss_pred             CCCC
Q psy15201         68 LTTP   71 (97)
Q Consensus        68 i~~~   71 (97)
                      +.+.
T Consensus       211 i~~L  214 (224)
T cd04165         211 LDLL  214 (224)
T ss_pred             HHHH
Confidence            8653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.28  E-value=2.1e-06  Score=58.94  Aligned_cols=57  Identities=25%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~~   72 (97)
                      .++ ++++++||+|+.+   .+..++.+++..+++..+...+  ..+++++||++|.|+.+.+
T Consensus       116 ~~~-p~iiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~  174 (194)
T cd01891         116 LGL-KPIVVINKIDRPD---ARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE  174 (194)
T ss_pred             cCC-CEEEEEECCCCCC---CCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccc
Confidence            455 4788999999974   2334445566666554443222  4799999999999996653

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG1145|consensus

Probab=98.27  E-value=1e-06  Score=70.43  Aligned_cols=58  Identities=29%  Similarity=0.457  Sum_probs=41.8

Q ss_pred             ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH---HHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201          8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGA---FLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~---~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      ||+..+| ++||+|||+|..+.+.++.   +.++..   .++.+|   .++++|||||++|+|++.+.
T Consensus       248 hAk~A~V-piVvAinKiDkp~a~pekv---~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~L~  308 (683)
T KOG1145|consen  248 HAKSANV-PIVVAINKIDKPGANPEKV---KRELLSQGIVVEDLG---GDVQVIPISALTGENLDLLE  308 (683)
T ss_pred             HHHhcCC-CEEEEEeccCCCCCCHHHH---HHHHHHcCccHHHcC---CceeEEEeecccCCChHHHH
Confidence            7788888 6999999999876444443   333322   334444   47999999999999997654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=5.6e-07  Score=71.02  Aligned_cols=56  Identities=30%  Similarity=0.527  Sum_probs=40.5

Q ss_pred             ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC----CCCceEEEeeeccCCCCCCC
Q psy15201          8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR----DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~iipiSA~~G~ni~~~   71 (97)
                      |||.+|+ |+||++||+|+.+.+..   .++.+++++    ++.    ...+.++|+||++|+|++++
T Consensus       102 hak~a~v-P~iVAiNKiDk~~~np~---~v~~el~~~----gl~~E~~gg~v~~VpvSA~tg~Gi~eL  161 (509)
T COG0532         102 HAKAAGV-PIVVAINKIDKPEANPD---KVKQELQEY----GLVPEEWGGDVIFVPVSAKTGEGIDEL  161 (509)
T ss_pred             HHHHCCC-CEEEEEecccCCCCCHH---HHHHHHHHc----CCCHhhcCCceEEEEeeccCCCCHHHH
Confidence            7888999 69999999999864333   333343332    332    24589999999999999765

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.19  E-value=2.7e-06  Score=56.80  Aligned_cols=56  Identities=29%  Similarity=0.421  Sum_probs=41.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC---------CCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF---------RDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~---------~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..++++++||+|+..  ++.+....++++..++..+.         .+...+++|+||++|.|+.+.
T Consensus       114 ~~~i~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l  178 (189)
T cd00881         114 GLPIIVAINKIDRVG--EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL  178 (189)
T ss_pred             CCCeEEEEECCCCcc--hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence            467999999999985  45555566667766655442         234689999999999998653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.19  E-value=2.9e-06  Score=65.37  Aligned_cols=57  Identities=26%  Similarity=0.426  Sum_probs=39.6

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.+|++++|+++||+|+++  +++..+..+++..+++...  ....+++|+||++|.|+.+
T Consensus       135 ~~~~i~~iiVVlNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~  191 (411)
T PRK04000        135 DIIGIKNIVIVQNKIDLVS--KERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDA  191 (411)
T ss_pred             HHcCCCcEEEEEEeecccc--chhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHH
Confidence            4578889999999999985  2333333445555554321  1357999999999999854

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.17  E-value=2.5e-06  Score=65.10  Aligned_cols=52  Identities=27%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+++ +++.++++.+++...+...+    ..+++++||++|.|+.+.
T Consensus       284 ~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~l  335 (429)
T TIGR03594       284 KALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDKL  335 (429)
T ss_pred             CcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHHH
Confidence            57999999999984 46667777777766554333    379999999999999754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=98.07  E-value=6e-06  Score=54.03  Aligned_cols=52  Identities=25%  Similarity=0.261  Sum_probs=36.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +++|+++||+|+.+..+...+++.+.+...+...    ...+++++||.+|.|+.+
T Consensus       114 ~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~  165 (174)
T cd01895         114 KALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL----DYAPIVFISALTGQGVDK  165 (174)
T ss_pred             CCEEEEEeccccCCccHHHHHHHHHHHHhhcccc----cCCceEEEeccCCCCHHH
Confidence            5789999999998643345555555555444221    237899999999999865

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.98  E-value=9.1e-06  Score=62.23  Aligned_cols=51  Identities=27%  Similarity=0.287  Sum_probs=38.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.+  ++..+++.+++...+....    ..+++++||++|.|+.+.
T Consensus       285 ~~~ivv~NK~Dl~~--~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~l  335 (435)
T PRK00093        285 RALVIVVNKWDLVD--EKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDKL  335 (435)
T ss_pred             CcEEEEEECccCCC--HHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHHH
Confidence            57999999999983  5556666666665554333    479999999999999754

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.97  E-value=1.2e-05  Score=64.59  Aligned_cols=61  Identities=28%  Similarity=0.450  Sum_probs=42.3

Q ss_pred             eccCCCeEEEEEEcCCCC-CCC------------------HHHHHHHHHHHHHHHHHhCCCC----------CCceEEEe
Q psy15201         10 AVSGVNQLGVVINKLDTV-SWS------------------QDRFQEIVTKLGAFLKQAGFRD----------SDIEYVPC   60 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v-~~~------------------~~~~~~i~~~l~~~l~~~~~~~----------~~~~iipi   60 (97)
                      +..+++ +|+++||+|++ .|.                  +++|++...++..++...++.+          .+++++|+
T Consensus       120 ~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpi  198 (586)
T PRK04004        120 KRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPV  198 (586)
T ss_pred             HHcCCC-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeec
Confidence            345664 89999999986 343                  3345555555555666556543          35899999


Q ss_pred             eeccCCCCCCC
Q psy15201         61 SGLTGENLTTP   71 (97)
Q Consensus        61 SA~~G~ni~~~   71 (97)
                      ||++|.|+.+.
T Consensus       199 SA~tGeGi~dL  209 (586)
T PRK04004        199 SAKTGEGIPDL  209 (586)
T ss_pred             cCCCCCChHHH
Confidence            99999999654

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.90  E-value=6.5e-06  Score=54.37  Aligned_cols=53  Identities=23%  Similarity=0.218  Sum_probs=33.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+  ....+++.+.+....+..+.  ...+++++||++|.|+.+.
T Consensus       108 ~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160         108 VPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             CCEEEEEEcccccc--CCCHHHHHHHhccccccccC--CceEEEEeeCCCCcCHHHH
Confidence            46999999999864  22223333333333222222  3479999999999998653

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.85  E-value=2.2e-05  Score=65.11  Aligned_cols=58  Identities=31%  Similarity=0.448  Sum_probs=37.8

Q ss_pred             ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH---HHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201          8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGA---FLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~---~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      +++..|++ +||++||||+.+++.++   +..++..   +.+..+   .+++++|+||++|.|+.+.-
T Consensus       384 ~a~~~~vP-iIVviNKiDl~~a~~e~---V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~eLl  444 (787)
T PRK05306        384 HAKAAGVP-IIVAINKIDKPGANPDR---VKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDELL  444 (787)
T ss_pred             HHHhcCCc-EEEEEECccccccCHHH---HHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchHHH
Confidence            35567775 99999999997644333   3333322   112222   24799999999999997653

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.81  E-value=3.6e-05  Score=65.48  Aligned_cols=62  Identities=29%  Similarity=0.443  Sum_probs=38.3

Q ss_pred             eccCCCeEEEEEEcCCCCC-CC---------------HHHHHHHHHHHHHH---HHHhCCCC----------CCceEEEe
Q psy15201         10 AVSGVNQLGVVINKLDTVS-WS---------------QDRFQEIVTKLGAF---LKQAGFRD----------SDIEYVPC   60 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~-~~---------------~~~~~~i~~~l~~~---l~~~~~~~----------~~~~iipi   60 (97)
                      +..++ ++|+++||+|+++ |.               +...+++..++..+   +...|+.+          ..++++|+
T Consensus       575 k~~~i-PiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpV  653 (1049)
T PRK14845        575 RQYKT-PFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPV  653 (1049)
T ss_pred             HHcCC-CEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEE
Confidence            34555 6999999999973 43               11223332222222   33344432          36899999


Q ss_pred             eeccCCCCCCCC
Q psy15201         61 SGLTGENLTTPS   72 (97)
Q Consensus        61 SA~~G~ni~~~~   72 (97)
                      ||.+|+|++.+.
T Consensus       654 SA~tGeGId~Ll  665 (1049)
T PRK14845        654 SAKTGEGIPELL  665 (1049)
T ss_pred             EcCCCCCHHHHH
Confidence            999999997653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.79  E-value=2.7e-05  Score=60.83  Aligned_cols=52  Identities=25%  Similarity=0.178  Sum_probs=35.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      +++|+|+||+|+++  .++...+..++...+....    ..+++++||++|.|+.+.-
T Consensus       323 ~piIiV~NK~Dl~~--~~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~lf  374 (472)
T PRK03003        323 RALVLAFNKWDLVD--EDRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDKLV  374 (472)
T ss_pred             CCEEEEEECcccCC--hhHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHHHH
Confidence            47999999999985  2333334444444333222    3689999999999997653

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.76  E-value=3e-05  Score=57.69  Aligned_cols=47  Identities=17%  Similarity=0.279  Sum_probs=32.9

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -|++|||+|++++....++++.+.++.+    .   ...+++++||++|+|+.+
T Consensus       233 DIVVLNKiDLl~~~~~dle~~~~~lr~l----n---p~a~I~~vSA~tGeGld~  279 (290)
T PRK10463        233 SLMLLNKVDLLPYLNFDVEKCIACAREV----N---PEIEIILISATSGEGMDQ  279 (290)
T ss_pred             cEEEEEhHHcCcccHHHHHHHHHHHHhh----C---CCCcEEEEECCCCCCHHH
Confidence            4899999999864344444444443332    2   248999999999999854

>PRK09866 hypothetical protein; Provisional

Probab=97.75  E-value=6.7e-05  Score=61.35  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=37.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+...+..+.+++.+...+.+..+  +...|+||||++|.|+...
T Consensus       290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~L  344 (741)
T PRK09866        290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANRA  344 (741)
T ss_pred             CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHHH
Confidence            379999999998752233345555555554433233  3479999999999998553

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.72  E-value=4.1e-05  Score=49.49  Aligned_cols=48  Identities=15%  Similarity=0.166  Sum_probs=32.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.+. ...    .++.+.+.+..++    .+++++||.+|.|+.+.
T Consensus        89 ~p~ilv~NK~Dl~~~-~~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l  136 (142)
T TIGR02528        89 KPVIGLVTKIDLAEA-DVD----IERAKELLETAGA----EPIFEISSVDEQGLEAL  136 (142)
T ss_pred             CCeEEEEEeeccCCc-ccC----HHHHHHHHHHcCC----CcEEEEecCCCCCHHHH
Confidence            488999999998752 111    2233444444443    48999999999998653

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.71  E-value=4.7e-05  Score=50.07  Aligned_cols=55  Identities=27%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh--CCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA--GFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++ ++++++||+|+.+...+++.   +.+..+....  .. ....+++|+||.+|.|+.+.
T Consensus       101 ~~~-p~ivv~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887         101 ANV-PFIVALNKIDKPNANPERVK---NELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             cCC-CEEEEEEceecccccHHHHH---HHHHHhhccccccc-cCcCcEEEeecccCCCHHHH
Confidence            454 68999999998753333322   2232222110  11 12478999999999998653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=3.1e-05  Score=60.37  Aligned_cols=56  Identities=20%  Similarity=0.303  Sum_probs=43.1

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .+||+++.|+|+||+|+++  ++|.++..+++...+   .+  .+.+++++|+.+|+|+.+..
T Consensus        99 dllgi~~giivltk~D~~d--~~r~e~~i~~Il~~l---~l--~~~~i~~~s~~~g~GI~~Lk  154 (447)
T COG3276          99 DLLGIKNGIIVLTKADRVD--EARIEQKIKQILADL---SL--ANAKIFKTSAKTGRGIEELK  154 (447)
T ss_pred             HhcCCCceEEEEecccccc--HHHHHHHHHHHHhhc---cc--ccccccccccccCCCHHHHH
Confidence            4699999999999999995  556666555554444   34  46899999999999886653

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.68  E-value=8.2e-05  Score=59.93  Aligned_cols=56  Identities=30%  Similarity=0.490  Sum_probs=35.3

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHH---HHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF---LKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~---l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++..+++ +|+++||+|+.+.+.++   +++++..+   ....+   .+.+++|+||++|.|+.+.
T Consensus       183 ~~~~~vP-iIVviNKiDl~~~~~e~---v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~eL  241 (587)
T TIGR00487       183 AKAANVP-IIVAINKIDKPEANPDR---VKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDEL  241 (587)
T ss_pred             HHHcCCC-EEEEEECcccccCCHHH---HHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHHH
Confidence            4456764 99999999997533322   22332221   11111   2468999999999999764

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>COG1159 Era GTPase [General function prediction only]

Probab=97.68  E-value=6.9e-05  Score=55.90  Aligned_cols=49  Identities=31%  Similarity=0.457  Sum_probs=32.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|.+. ++..+..+.+.   +-....|    ..++||||++|.|+...
T Consensus       115 ~pvil~iNKID~~~-~~~~l~~~~~~---~~~~~~f----~~ivpiSA~~g~n~~~L  163 (298)
T COG1159         115 TPVILVVNKIDKVK-PKTVLLKLIAF---LKKLLPF----KEIVPISALKGDNVDTL  163 (298)
T ss_pred             CCeEEEEEccccCC-cHHHHHHHHHH---HHhhCCc----ceEEEeeccccCCHHHH
Confidence            47899999999986 23322222222   2222234    69999999999999664

>cd04151 Arl1 Arl1 subfamily

Probab=97.68  E-value=5.3e-05  Score=49.89  Aligned_cols=51  Identities=24%  Similarity=0.189  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+. . ...+    +...+....+.....+++|+||++|.|+.+.
T Consensus       101 ~piiiv~nK~Dl~~~-~-~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  151 (158)
T cd04151         101 AVLLVFANKQDMPGA-L-SEAE----ISEKLGLSELKDRTWSIFKTSAIKGEGLDEG  151 (158)
T ss_pred             CcEEEEEeCCCCCCC-C-CHHH----HHHHhCccccCCCcEEEEEeeccCCCCHHHH
Confidence            589999999998741 1 1112    2222211112223468999999999998654

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04154 Arl2 Arl2 subfamily

Probab=97.67  E-value=4.5e-05  Score=51.09  Aligned_cols=52  Identities=23%  Similarity=0.247  Sum_probs=33.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+..  .    .++++..++....+....+++++||.+|.|+.+.
T Consensus       115 ~~p~iiv~nK~Dl~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  166 (173)
T cd04154         115 GATLLILANKQDLPGAL--S----EEEIREALELDKISSHHWRIQPCSAVTGEGLLQG  166 (173)
T ss_pred             CCCEEEEEECcccccCC--C----HHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence            36799999999987411  1    1233333332222234579999999999999653

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04167 Snu114p Snu114p subfamily

Probab=97.67  E-value=6.1e-05  Score=52.65  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             cCCCeEEEEEEcCCCCC--------CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc
Q psy15201         12 SGVNQLGVVINKLDTVS--------WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS   82 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~--------~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~   82 (97)
                      .+ .++|+++||+|++.        ...++++++.+++..+++..++++ .+.++|++    .|+...++.   +.|+-
T Consensus       122 ~~-~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~-~~~~~p~~----~nv~~~s~~---~~w~~  191 (213)
T cd04167         122 EG-LPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTL-SFLFSPEN----GNVCFASSK---FGFCF  191 (213)
T ss_pred             cC-CCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEeccCC----CeEEEEecC---CCeEE
Confidence            45 57899999999862        123578888888888888877753 36677774    788777765   78873

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=97.65  E-value=7.9e-05  Score=49.98  Aligned_cols=47  Identities=15%  Similarity=0.147  Sum_probs=33.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++++++||+|+.+.+   .    +++..+++..++   ..|++++||++|.|+.+.
T Consensus        92 ~~ii~v~nK~Dl~~~~---~----~~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~l  138 (158)
T PRK15467         92 KRQIAVISKTDMPDAD---V----AATRKLLLETGF---EEPIFELNSHDPQSVQQL  138 (158)
T ss_pred             CCeEEEEEccccCccc---H----HHHHHHHHHcCC---CCCEEEEECCCccCHHHH
Confidence            4689999999986421   1    234455555554   269999999999999764

>PRK04213 GTP-binding protein; Provisional

Probab=97.62  E-value=4.4e-05  Score=52.28  Aligned_cols=51  Identities=20%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC----CCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR----DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++ ++|+++||+|+.+..    .+..+++...   .+..    .-..+++++||.+| |+.+.
T Consensus       129 ~~~-p~iiv~NK~Dl~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~SA~~g-gi~~l  183 (201)
T PRK04213        129 LGI-PPIVAVNKMDKIKNR----DEVLDEIAER---LGLYPPWRQWQDIIAPISAKKG-GIEEL  183 (201)
T ss_pred             cCC-CeEEEEECccccCcH----HHHHHHHHHH---hcCCccccccCCcEEEEecccC-CHHHH
Confidence            344 689999999997522    1122222222   2321    01137899999999 99754

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.60  E-value=6.2e-05  Score=52.57  Aligned_cols=48  Identities=23%  Similarity=0.145  Sum_probs=32.1

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.++++||+|+++......++..+.++.    ..   ...+++++||++|.|+.+
T Consensus       150 a~iiv~NK~Dl~~~~~~~~~~~~~~l~~----~~---~~~~i~~~Sa~~g~gv~~  197 (207)
T TIGR00073       150 ADLIVINKADLAEAVGFDVEKMKADAKK----IN---PEAEIILMSLKTGEGLDE  197 (207)
T ss_pred             CCEEEEEHHHccccchhhHHHHHHHHHH----hC---CCCCEEEEECCCCCCHHH
Confidence            4599999999985322333444444332    22   237899999999999854

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.57  E-value=0.00012  Score=46.50  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+....      ...+....+...+.    .+++|+||.+|.|+.+.
T Consensus       108 ~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231       108 NVPIILVGNKIDLRDAK------LKTHVAFLFAKLNG----EPIIPLSAETGKNIDSA  155 (161)
T ss_pred             CCcEEEEEEcccCCcch------hhHHHHHHHhhccC----CceEEeecCCCCCHHHH
Confidence            34789999999998522      23444444544443    57999999999998653

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.57  E-value=0.00017  Score=48.03  Aligned_cols=47  Identities=19%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+++  ++...+   .+..+ +...    ..+++++||.+|.|+.+.
T Consensus        30 ~p~IiVlNK~Dl~~--~~~~~~---~~~~~-~~~~----~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849          30 KKLILVLNKADLVP--KEVLRK---WLAYL-RHSY----PTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CCEEEEEechhcCC--HHHHHH---HHHHH-HhhC----CceEEEEeccCCcChhhH
Confidence            57999999999985  332221   12222 2222    257899999999998654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00436 era GTP-binding protein Era

Probab=97.56  E-value=0.00014  Score=52.75  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .++|+++||+|+++  .+..   .+.+..+.+..++    .+++|+||.+|.|+.+..
T Consensus       108 ~p~ilV~NK~Dl~~--~~~~---~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~L~  156 (270)
T TIGR00436       108 RPVVLTRNKLDNKF--KDKL---LPLIDKYAILEDF----KDIVPISALTGDNTSFLA  156 (270)
T ss_pred             CCEEEEEECeeCCC--HHHH---HHHHHHHHhhcCC----CceEEEecCCCCCHHHHH
Confidence            47899999999974  2222   2223333332233    489999999999997653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01890 LepA LepA subfamily

Probab=97.56  E-value=0.00012  Score=48.82  Aligned_cols=50  Identities=22%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++ ++|+++||+|+.+..   ..++.+++...   .++.  ..+++++||.+|.|+.+.
T Consensus       119 ~~-~iiiv~NK~Dl~~~~---~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~l  168 (179)
T cd01890         119 NL-EIIPVINKIDLPSAD---PERVKQQIEDV---LGLD--PSEAILVSAKTGLGVEDL  168 (179)
T ss_pred             CC-CEEEEEECCCCCcCC---HHHHHHHHHHH---hCCC--cccEEEeeccCCCCHHHH
Confidence            44 589999999987422   22222333332   2432  246899999999999654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.54  E-value=9.2e-05  Score=60.56  Aligned_cols=51  Identities=22%  Similarity=0.111  Sum_probs=34.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+++  .+..+.+...+...+...    ...+++++||++|.|+.+.
T Consensus       562 ~piIiV~NK~DL~~--~~~~~~~~~~~~~~l~~~----~~~~ii~iSAktg~gv~~L  612 (712)
T PRK09518        562 RALVLVFNKWDLMD--EFRRQRLERLWKTEFDRV----TWARRVNLSAKTGWHTNRL  612 (712)
T ss_pred             CCEEEEEEchhcCC--hhHHHHHHHHHHHhccCC----CCCCEEEEECCCCCCHHHH
Confidence            57999999999985  333333434444333222    2478999999999999664

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.54  E-value=0.00013  Score=48.39  Aligned_cols=53  Identities=26%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+ .....+++         .++...+.+..+.    .+++++||++|.|+.+.
T Consensus       102 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~l  163 (174)
T smart00174      102 NTPIILVGTKLDLRE-DKSTLRELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVREV  163 (174)
T ss_pred             CCCEEEEecChhhhh-ChhhhhhhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHHH
Confidence            468999999999875 22222211         1233445544443    58999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>KOG0461|consensus

Probab=97.53  E-value=0.00023  Score=54.87  Aligned_cols=53  Identities=26%  Similarity=0.354  Sum_probs=43.8

Q ss_pred             cCCCeEEEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201         12 SGVNQLGVVINKLDTVSW--SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG   65 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G   65 (97)
                      +-+++.||++||+|..+.  ..+.+++...+++.-++.++|. .+.||+++||..|
T Consensus       120 ~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~-g~~PI~~vsa~~G  174 (522)
T KOG0461|consen  120 LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD-GNSPIVEVSAADG  174 (522)
T ss_pred             hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC-CCCceeEEecCCC
Confidence            446789999999997752  3467888888889999999985 5699999999999

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.53  E-value=0.00014  Score=48.00  Aligned_cols=47  Identities=23%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+  .....+    .+.+.+.     ...+++++||++|.|+.+.
T Consensus       113 ~~pvilv~NK~Dl~~--~~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~l  159 (168)
T cd01897         113 NKPVIVVLNKIDLLT--FEDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDEV  159 (168)
T ss_pred             cCCeEEEEEccccCc--hhhHHH----HHHhhhh-----ccCceEEEEecccCCHHHH
Confidence            468999999999975  222222    2222221     2368999999999998654

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.52  E-value=0.00017  Score=58.17  Aligned_cols=19  Identities=26%  Similarity=0.510  Sum_probs=16.6

Q ss_pred             CceEEEeeeccCCCCCCCC
Q psy15201         54 DIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        54 ~~~iipiSA~~G~ni~~~~   72 (97)
                      .++++|+||++|+|+++.-
T Consensus       190 ~v~iVpVSA~tGeGideLl  208 (590)
T TIGR00491       190 TVAIIPISAITGEGIPELL  208 (590)
T ss_pred             CceEEEeecCCCCChhHHH
Confidence            5899999999999997753

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0466|consensus

Probab=97.52  E-value=9.8e-05  Score=56.14  Aligned_cols=56  Identities=14%  Similarity=0.241  Sum_probs=46.2

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+..+++|+.-||+|++.  ++...+-.++++.|++....  +..|+||+||--+.|++-
T Consensus       176 iM~LkhiiilQNKiDli~--e~~A~eq~e~I~kFi~~t~a--e~aPiiPisAQlkyNId~  231 (466)
T KOG0466|consen  176 IMKLKHIIILQNKIDLIK--ESQALEQHEQIQKFIQGTVA--EGAPIIPISAQLKYNIDV  231 (466)
T ss_pred             HhhhceEEEEechhhhhh--HHHHHHHHHHHHHHHhcccc--CCCceeeehhhhccChHH
Confidence            477899999999999994  66677777888888876654  468999999999998853

>cd01882 BMS1 Bms1

Probab=97.50  E-value=0.00041  Score=49.29  Aligned_cols=57  Identities=14%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ..|+..+|+++||+|+++ +...+++++++++..+..--+  ...+++++||++...+..
T Consensus       130 ~~g~p~vi~VvnK~D~~~-~~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~~~  186 (225)
T cd01882         130 VHGFPRVMGVLTHLDLFK-KNKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRYPK  186 (225)
T ss_pred             HcCCCeEEEEEeccccCC-cHHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCCCH
Confidence            356666777999999985 345566777777663322112  247999999998866544

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.48  E-value=0.00036  Score=45.83  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN   67 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n   67 (97)
                      -+++|+++||+|+++  ++..+    +...+++..+     .+++++||.+|.+
T Consensus        42 ~k~~iivlNK~DL~~--~~~~~----~~~~~~~~~~-----~~ii~iSa~~~~~   84 (141)
T cd01857          42 RKKNILLLNKADLLT--EEQRK----AWAEYFKKEG-----IVVVFFSALKENA   84 (141)
T ss_pred             CCcEEEEEechhcCC--HHHHH----HHHHHHHhcC-----CeEEEEEecCCCc
Confidence            357999999999974  33222    3333444333     4789999999986

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=97.48  E-value=0.00014  Score=49.80  Aligned_cols=54  Identities=20%  Similarity=0.154  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHH-HHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGA-FLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~-~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+++. +...+++...... ..+..++  ...+++++||++|.|+.+.
T Consensus        62 ~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~i~~vSA~~~~gi~eL  116 (190)
T cd01855          62 NPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGL--KPKDVILISAKKGWGVEEL  116 (190)
T ss_pred             CcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCC--CcccEEEEECCCCCCHHHH
Confidence            578999999999752 1111211111111 1122232  1246899999999999664

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04135 Tc10 TC10 subfamily

Probab=97.47  E-value=0.00013  Score=48.50  Aligned_cols=54  Identities=24%  Similarity=0.215  Sum_probs=33.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHH-------HH-HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQ-------EI-VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~-------~i-~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+....+..       .+ .++.+.+.+..+.    .+++.+||++|.|+.+.
T Consensus       104 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~~  165 (174)
T cd04135         104 NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKTV  165 (174)
T ss_pred             CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHHH
Confidence            3578999999998752221110       00 1233444454443    57999999999998654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04157 Arl6 Arl6 subfamily

Probab=97.47  E-value=0.00014  Score=47.50  Aligned_cols=51  Identities=20%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+.  ....+    +...++.........+++++||++|.|+.+.
T Consensus       105 ~p~iiv~NK~Dl~~~--~~~~~----~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~  155 (162)
T cd04157         105 VPILFFANKMDLPDA--LTAVK----ITQLLGLENIKDKPWHIFASNALTGEGLDEG  155 (162)
T ss_pred             CCEEEEEeCccccCC--CCHHH----HHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence            579999999998752  11122    2222211111112357999999999999764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PRK00089 era GTPase Era; Reviewed

Probab=97.44  E-value=0.00024  Score=51.72  Aligned_cols=49  Identities=27%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|++. +.+...+..+.+.   +..+    ..+++|+||.+|.|+.+.
T Consensus       114 ~pvilVlNKiDl~~-~~~~l~~~~~~l~---~~~~----~~~i~~iSA~~~~gv~~L  162 (292)
T PRK00089        114 TPVILVLNKIDLVK-DKEELLPLLEELS---ELMD----FAEIVPISALKGDNVDEL  162 (292)
T ss_pred             CCEEEEEECCcCCC-CHHHHHHHHHHHH---hhCC----CCeEEEecCCCCCCHHHH
Confidence            47899999999984 2333333323322   2223    368999999999998664

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.44  E-value=0.00016  Score=46.99  Aligned_cols=48  Identities=21%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+. ...    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       106 ~~piivv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  153 (162)
T cd04138         106 DVPMVLVGNKCDLAAR-TVS----SRQGQDLAKSYG-----IPYIETSAKTRQGVEEA  153 (162)
T ss_pred             CCCEEEEEECcccccc-eec----HHHHHHHHHHhC-----CeEEEecCCCCCCHHHH
Confidence            3578999999998751 111    122333333333     58999999999998653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.43  E-value=0.00015  Score=47.39  Aligned_cols=53  Identities=23%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-.+++++.||+|+...  ...+++.+    .++.........+++++||++|.|+.+.
T Consensus        99 ~~~piiiv~nK~D~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  151 (158)
T cd00878          99 KGVPLLIFANKQDLPGA--LSVSELIE----KLGLEKILGRRWHIQPCSAVTGDGLDEG  151 (158)
T ss_pred             CCCcEEEEeeccCCccc--cCHHHHHH----hhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence            34689999999998752  12222222    2222112224579999999999998653

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04149 Arf6 Arf6 subfamily

Probab=97.42  E-value=0.00018  Score=48.39  Aligned_cols=51  Identities=22%  Similarity=0.188  Sum_probs=31.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+. . .    .++++..++.........+++++||++|.|+.+.
T Consensus       111 ~piilv~NK~Dl~~~-~-~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~  161 (168)
T cd04149         111 ALLLVFANKQDLPDA-M-K----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  161 (168)
T ss_pred             CcEEEEEECcCCccC-C-C----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence            479999999998641 0 1    1233333321112223468999999999998653

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=97.42  E-value=0.00022  Score=57.50  Aligned_cols=59  Identities=31%  Similarity=0.311  Sum_probs=41.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~   71 (97)
                      +...|++ .|+++||||+.+   .++.++.+++..++...+...+  ..|++++||.+|.+..+.
T Consensus       112 a~~~~ip-~IVviNKiD~~~---a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~  172 (594)
T TIGR01394       112 ALELGLK-PIVVINKIDRPS---ARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDL  172 (594)
T ss_pred             HHHCCCC-EEEEEECCCCCC---cCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccC
Confidence            4457875 689999999874   3456666777777765554322  368999999999876543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.42  E-value=0.00038  Score=47.15  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=36.1

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++ ++++++||+|+.+  ....+++.+++...++..     ..+++|+||++|.|+.+.
T Consensus       134 ~~~-~~iiv~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~l  185 (196)
T PRK00454        134 YGI-PVLIVLTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDEL  185 (196)
T ss_pred             cCC-cEEEEEECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHHH
Confidence            454 4799999999974  344445555565555432     368899999999998653

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=97.42  E-value=0.00018  Score=46.75  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+++. . ...   ...+.+.+..+     .+++++||.+|.|+.+.
T Consensus       102 ~~~iiv~NK~Dl~~~-~-~~~---~~~~~~~~~~~-----~~~~~iSa~~~~~~~~l  148 (158)
T cd01879         102 LPVVVALNMIDEAEK-R-GIK---IDLDKLSELLG-----VPVVPTSARKGEGIDEL  148 (158)
T ss_pred             CCEEEEEehhhhccc-c-cch---hhHHHHHHhhC-----CCeEEEEccCCCCHHHH
Confidence            478999999999752 1 111   11222222223     58999999999998653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=97.40  E-value=0.00025  Score=53.30  Aligned_cols=48  Identities=31%  Similarity=0.450  Sum_probs=31.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+++||+|+.+  .+..+++.+   .+.+..+     .+++++||++|.|+.+.
T Consensus       273 ~kp~IIV~NK~DL~~--~~~~~~~~~---~l~~~~~-----~~vi~iSAktg~GI~eL  320 (329)
T TIGR02729       273 EKPRIVVLNKIDLLD--EEELAELLK---ELKKALG-----KPVFPISALTGEGLDEL  320 (329)
T ss_pred             cCCEEEEEeCccCCC--hHHHHHHHH---HHHHHcC-----CcEEEEEccCCcCHHHH
Confidence            468899999999975  222232222   2222222     58999999999998654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.40  E-value=0.00017  Score=46.98  Aligned_cols=49  Identities=27%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    ..+...+.+..+     .+++++||.+|.|+.+.
T Consensus       105 ~~piiiv~NK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  153 (164)
T cd04139         105 NVPLLLVGNKCDLEDKRQVS----SEEAANLARQWG-----VPYVETSAKTRQNVEKA  153 (164)
T ss_pred             CCCEEEEEEccccccccccC----HHHHHHHHHHhC-----CeEEEeeCCCCCCHHHH
Confidence            35789999999987511111    112222333333     58999999999999654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.39  E-value=0.00019  Score=59.28  Aligned_cols=56  Identities=25%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHH---HHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF---LKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~---l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++..++ ++|+++||+|+.+.+   ++++.+++..+   .+..+   ...+++|+||++|.|+.+.
T Consensus       343 ~k~~~i-PiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIdeL  401 (742)
T CHL00189        343 IQAANV-PIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDKL  401 (742)
T ss_pred             HHhcCc-eEEEEEECCCccccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHHH
Confidence            445676 599999999997532   33334444322   12122   2479999999999999664

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.36  E-value=0.00027  Score=46.97  Aligned_cols=52  Identities=17%  Similarity=0.081  Sum_probs=31.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+++++.||+|+.+...  .+    ++...+....+......++++||++|.|+.+.
T Consensus       101 ~~piilv~NK~Dl~~~~~--~~----~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~  152 (159)
T cd04150         101 DAVLLVFANKQDLPNAMS--AA----EVTDKLGLHSLRNRNWYIQATCATSGDGLYEG  152 (159)
T ss_pred             CCCEEEEEECCCCCCCCC--HH----HHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence            468999999999864111  11    22222211112223467889999999998654

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01858 NGP_1 NGP-1

Probab=97.36  E-value=0.00029  Score=46.92  Aligned_cols=46  Identities=15%  Similarity=-0.015  Sum_probs=28.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++.|+++||+|+++  ++...   ..+..+ ++. +   ...++|+||.+|.|+.+
T Consensus        40 ~p~ilVlNKiDl~~--~~~~~---~~~~~~-~~~-~---~~~~~~iSa~~~~~~~~   85 (157)
T cd01858          40 KHLIFVLNKCDLVP--TWVTA---RWVKIL-SKE-Y---PTIAFHASINNPFGKGS   85 (157)
T ss_pred             CCEEEEEEchhcCC--HHHHH---HHHHHH-hcC-C---cEEEEEeeccccccHHH
Confidence            57899999999985  32222   222222 211 2   13368999999998754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.35  E-value=0.0003  Score=47.47  Aligned_cols=55  Identities=27%  Similarity=0.365  Sum_probs=39.8

Q ss_pred             CceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          7 GKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         7 ~~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      |=++.+. +++|-+|||+|+.. +++..+    +.+.+|+..|+    ..++++|+.+|+|+.+.
T Consensus        83 ~fa~~f~-~pvIGVITK~Dl~~-~~~~i~----~a~~~L~~aG~----~~if~vS~~~~eGi~eL  137 (143)
T PF10662_consen   83 GFASMFN-KPVIGVITKIDLPS-DDANIE----RAKKWLKNAGV----KEIFEVSAVTGEGIEEL  137 (143)
T ss_pred             hhhcccC-CCEEEEEECccCcc-chhhHH----HHHHHHHHcCC----CCeEEEECCCCcCHHHH
Confidence            4455554 68999999999984 344444    34556777787    36799999999999764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.33  E-value=0.00033  Score=52.41  Aligned_cols=53  Identities=19%  Similarity=0.329  Sum_probs=37.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      |...|+++ |+++||+|+++ +++...   ++....++..++     +++.+|+.+++++.+.
T Consensus       106 ae~~gi~p-vIvlnK~DL~~-~~~~~~---~~~~~~y~~~gy-----~v~~~s~~~~~~~~~l  158 (301)
T COG1162         106 AEAGGIEP-VIVLNKIDLLD-DEEAAV---KELLREYEDIGY-----PVLFVSAKNGDGLEEL  158 (301)
T ss_pred             HHHcCCcE-EEEEEccccCc-chHHHH---HHHHHHHHhCCe-----eEEEecCcCcccHHHH
Confidence            45678987 55599999996 333332   445555666665     8899999999988665

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.33  E-value=0.00053  Score=44.32  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+..  ..........+...++. ..  ...+++|+||++|.++.+
T Consensus       111 ~~vi~v~nK~D~~~--~~~~~~~~~~~~~~l~~-~~--~~~~~~~~Sa~~~~~~~~  161 (170)
T cd01876         111 IPFLVVLTKADKLK--KSELAKALKEIKKELKL-FE--IDPPIILFSSLKGQGIDE  161 (170)
T ss_pred             CCEEEEEEchhcCC--hHHHHHHHHHHHHHHHh-cc--CCCceEEEecCCCCCHHH
Confidence            46899999999874  44444444555555542 11  236899999999998754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.32  E-value=0.00027  Score=53.65  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=39.4

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++-+++++++||+|+.+. +...+++.+.++.+.+..++.  ...++++||.+|.|+.+.
T Consensus        88 ~~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~~g~~--~~~i~~vSAk~g~gv~eL  144 (360)
T TIGR03597        88 VGGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKELGLK--PVDIILVSAKKGNGIDEL  144 (360)
T ss_pred             hCCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHHcCCC--cCcEEEecCCCCCCHHHH
Confidence            456789999999999862 222344455555566655552  236899999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01898 Obg Obg subfamily

Probab=97.30  E-value=0.0003  Score=46.36  Aligned_cols=49  Identities=31%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+++||+|+.+.  ....   +.+..+.+..    ...+++++||++|.|+.+.
T Consensus       114 ~~p~ivv~NK~Dl~~~--~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l  162 (170)
T cd01898         114 EKPRIVVLNKIDLLDE--EELF---ELLKELLKEL----WGKPVFPISALTGEGLDEL  162 (170)
T ss_pred             ccccEEEEEchhcCCc--hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCHHHH
Confidence            3678999999998752  2221   2233333322    1368999999999998653

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK10218 GTP-binding protein; Provisional

Probab=97.30  E-value=0.00039  Score=56.29  Aligned_cols=60  Identities=23%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~~~~   72 (97)
                      +..+|++. |+++||+|+.+   .+++++.+++..++..++..  ....|++++||.+|.+..+.+
T Consensus       116 a~~~gip~-IVviNKiD~~~---a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~  177 (607)
T PRK10218        116 AFAYGLKP-IVVINKVDRPG---ARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHE  177 (607)
T ss_pred             HHHcCCCE-EEEEECcCCCC---CchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcc
Confidence            44578865 78999999874   45556666676666543332  124799999999999765543

>cd01864 Rab19 Rab19 subfamily

Probab=97.28  E-value=0.00027  Score=46.70  Aligned_cols=49  Identities=14%  Similarity=0.125  Sum_probs=31.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+..    .++...+.+..+.    .+++++||.+|.|+.+.
T Consensus       109 ~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~  157 (165)
T cd01864         109 VVLLLIGNKCDLEEQREVL----FEEACTLAEKNGM----LAVLETSAKESQNVEEA  157 (165)
T ss_pred             CcEEEEEECcccccccccC----HHHHHHHHHHcCC----cEEEEEECCCCCCHHHH
Confidence            3689999999987521111    1223334443333    57899999999998653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.28  E-value=0.00032  Score=47.18  Aligned_cols=51  Identities=31%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+. . ..+++.+.    +.....+....+++|+||.+|.|+.+.
T Consensus       117 ~p~viv~NK~Dl~~~-~-~~~~i~~~----l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153         117 AVLLVLANKQDLKGA-M-TPAEISES----LGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             CCEEEEEECCCCCCC-C-CHHHHHHH----hCcccccCCceEEEecccCCCCCHHHH
Confidence            579999999998641 1 11222222    210011112468999999999998664

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04128 Spg1 Spg1p

Probab=97.28  E-value=0.00045  Score=47.24  Aligned_cols=49  Identities=18%  Similarity=0.154  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         18 GVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        18 Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      |++.||+|+... +....+.+.++.+.+.+..+     .+++++||++|.|+.+.
T Consensus       108 ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~l  157 (182)
T cd04128         108 ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-----APLIFCSTSHSINVQKI  157 (182)
T ss_pred             EEEEEchhccccccchhhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            678999998631 11111223344445544433     68999999999999765

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01859 MJ1464 MJ1464

Probab=97.28  E-value=0.00043  Score=45.87  Aligned_cols=46  Identities=20%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+++  ++..++    ...+.+..     ..+++++||.+|.|+.+.
T Consensus        42 ~p~iiv~NK~Dl~~--~~~~~~----~~~~~~~~-----~~~~~~iSa~~~~gi~~L   87 (156)
T cd01859          42 KKLLIVLNKADLVP--KEVLEK----WKSIKESE-----GIPVVYVSAKERLGTKIL   87 (156)
T ss_pred             CcEEEEEEhHHhCC--HHHHHH----HHHHHHhC-----CCcEEEEEccccccHHHH
Confidence            57899999999974  222221    11222221     257999999999998653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.27  E-value=0.00048  Score=52.42  Aligned_cols=49  Identities=29%  Similarity=0.287  Sum_probs=32.8

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .|+ ++|+|+||+|+++  ++..+    .+...++..++     +++++||.+|.|+.+..
T Consensus       119 ~~i-p~ILVlNK~DLv~--~~~~~----~~~~~~~~~g~-----~v~~iSA~tg~GI~eL~  167 (352)
T PRK12289        119 TGL-EIVLCLNKADLVS--PTEQQ----QWQDRLQQWGY-----QPLFISVETGIGLEALL  167 (352)
T ss_pred             CCC-CEEEEEEchhcCC--hHHHH----HHHHHHHhcCC-----eEEEEEcCCCCCHHHHh
Confidence            354 6799999999985  22222    22233344444     78999999999997653

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.25  E-value=0.00047  Score=52.19  Aligned_cols=53  Identities=21%  Similarity=0.226  Sum_probs=35.2

Q ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCCCCC
Q psy15201         18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~~~~   72 (97)
                      |+++||+|+.+  ....++...+++..+......  ....|++++||.+|.|+.+.-
T Consensus       198 IiVVNKaDl~~--~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~  252 (332)
T PRK09435        198 LIVINKADGDN--KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIW  252 (332)
T ss_pred             eEEeehhcccc--hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHH
Confidence            89999999985  333445555566555432210  112689999999999997753

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.25  E-value=0.0006  Score=45.28  Aligned_cols=53  Identities=21%  Similarity=0.245  Sum_probs=33.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+++++.||+|+.+ .....+++.         .+.+.+.+..+    ..+++++||.+|.|+.+.
T Consensus       105 ~~piilv~nK~Dl~~-~~~~~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~l  166 (175)
T cd01870         105 NVPIILVGNKKDLRN-DEHTRRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVREV  166 (175)
T ss_pred             CCCEEEEeeChhccc-ChhhhhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHHH
Confidence            458999999999875 222222211         22233333333    258999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK13796 GTPase YqeH; Provisional

Probab=97.25  E-value=0.00038  Score=52.99  Aligned_cols=57  Identities=23%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+-+++++++||+|+.+. +...+++.+.++.+.+..++.  ...++++||.+|.|+.+.
T Consensus        94 ~~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~--~~~v~~vSAk~g~gI~eL  150 (365)
T PRK13796         94 VGNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLR--PVDVVLISAQKGHGIDEL  150 (365)
T ss_pred             hCCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCC--cCcEEEEECCCCCCHHHH
Confidence            345789999999999852 222334444455555555552  247899999999998654

>cd04116 Rab9 Rab9 subfamily

Probab=97.24  E-value=0.00034  Score=46.36  Aligned_cols=47  Identities=21%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+. +..    .++++.+.+..+.    .+++++||.+|.|+.+
T Consensus       115 ~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~  161 (170)
T cd04116         115 FPFVVLGNKNDIPER-QVS----TEEAQAWCRENGD----YPYFETSAKDATNVAA  161 (170)
T ss_pred             CcEEEEEECcccccc-ccC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHH
Confidence            378999999998631 111    2334445544443    5899999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=97.24  E-value=0.00026  Score=46.30  Aligned_cols=48  Identities=17%  Similarity=0.078  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+..    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       108 ~piiiv~NK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  155 (164)
T cd04145         108 FPMILVGNKADLEHQRKVS----REEGQELARKLK-----IPYIETSAKDRLNVDKA  155 (164)
T ss_pred             CCEEEEeeCccccccceec----HHHHHHHHHHcC-----CcEEEeeCCCCCCHHHH
Confidence            4789999999986411101    122333444333     58899999999998653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.24  E-value=0.00033  Score=48.20  Aligned_cols=49  Identities=22%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+...    ...+++..+.+..++    .+++++||.+|.|+.+.
T Consensus       111 ~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e~  159 (201)
T cd04107         111 IPCLLLANKCDLKKRLA----KDGEQMDQFCKENGF----IGWFETSAKEGINIEEA  159 (201)
T ss_pred             CcEEEEEECCCcccccc----cCHHHHHHHHHHcCC----ceEEEEeCCCCCCHHHH
Confidence            47899999999973111    112344555555443    58999999999998764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=97.23  E-value=0.00024  Score=48.21  Aligned_cols=52  Identities=15%  Similarity=0.096  Sum_probs=32.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+.......+++..+.+..+     .+++++||.+|.|+.+.
T Consensus       106 ~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118         106 CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDEL  157 (193)
T ss_pred             CCEEEEEEcccccccccccCccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            47999999999874211111111123444443332     58999999999999654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=97.23  E-value=0.00033  Score=55.66  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=32.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -++.|+++||+|+.+ ..+..+    .+...++..+     .++++|||.+|.|+.+.
T Consensus       284 ~kP~IVVlNKiDL~d-a~el~e----~l~~~l~~~g-----~~Vf~ISA~tgeGLdEL  331 (500)
T PRK12296        284 ERPRLVVLNKIDVPD-ARELAE----FVRPELEARG-----WPVFEVSAASREGLREL  331 (500)
T ss_pred             CCCEEEEEECccchh-hHHHHH----HHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            468999999999874 222222    2233333322     58999999999999654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=97.23  E-value=0.00026  Score=46.26  Aligned_cols=48  Identities=17%  Similarity=0.087  Sum_probs=31.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+  ..  .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~p~iiv~nK~Dl~~~~~--v~--~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  154 (162)
T cd04106         107 IPMVLVQTKIDLLDQAV--IT--NEEAEALAKRLQ-----LPLFRTSVKDDFNVTEL  154 (162)
T ss_pred             CCEEEEEEChhcccccC--CC--HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            46899999999874211  11  123344444444     48999999999998653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01894 EngA1 EngA1 subfamily

Probab=97.22  E-value=0.00052  Score=44.27  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+. ...        ...+...++    .+++++||.+|.|+.+.
T Consensus       106 ~piiiv~nK~D~~~~-~~~--------~~~~~~~~~----~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894         106 KPVILVVNKVDNIKE-EDE--------AAEFYSLGF----GEPIPISAEHGRGIGDL  149 (157)
T ss_pred             CCEEEEEECcccCCh-HHH--------HHHHHhcCC----CCeEEEecccCCCHHHH
Confidence            579999999999852 211        112223333    36899999999998653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.22  E-value=0.0003  Score=46.20  Aligned_cols=48  Identities=19%  Similarity=0.098  Sum_probs=31.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+...  ..  .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       106 ~pii~v~nK~Dl~~~~~--~~--~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  153 (164)
T smart00173      106 VPIVLVGNKCDLESERV--VS--TEEGKELARQWG-----CPFLETSAKERVNVDEA  153 (164)
T ss_pred             CCEEEEEECccccccce--Ec--HHHHHHHHHHcC-----CEEEEeecCCCCCHHHH
Confidence            57899999999874111  00  122333333322     68999999999998653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01862 Rab7 Rab7 subfamily

Probab=97.22  E-value=0.00038  Score=45.87  Aligned_cols=50  Identities=22%  Similarity=0.160  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+.....    .+++..+.+..+.    .+++++||.+|.|+.+.
T Consensus       109 ~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862         109 NFPFVVLGNKIDLEEKRQVS----TKKAQQWCQSNGN----IPYFETSAKEAINVEQA  158 (172)
T ss_pred             CceEEEEEECcccccccccC----HHHHHHHHHHcCC----ceEEEEECCCCCCHHHH
Confidence            45789999999997311111    1223344444442    69999999999998553

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=97.20  E-value=0.00039  Score=52.46  Aligned_cols=49  Identities=20%  Similarity=0.156  Sum_probs=31.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+++||+|+.+. +....   ++.+.+.+..     ..+++|+||++|+|+.+.
T Consensus       271 ~kp~IIV~NKiDL~~~-~~~~~---~~~~~~~~~~-----~~~i~~iSAktg~GI~eL  319 (335)
T PRK12299        271 DKPRILVLNKIDLLDE-EEERE---KRAALELAAL-----GGPVFLISAVTGEGLDEL  319 (335)
T ss_pred             cCCeEEEEECcccCCc-hhHHH---HHHHHHHHhc-----CCCEEEEEcCCCCCHHHH
Confidence            4689999999999752 21111   1222222222     258999999999999764

>cd00157 Rho Rho (Ras homology) family

Probab=97.20  E-value=0.00045  Score=45.46  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=34.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHH--------HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQE--------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~--------i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+++++.||+|+.+ ...+.+.        ..++...+.+..+.    .+++++||.+|.|+.+.
T Consensus       104 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l  164 (171)
T cd00157         104 NVPIILVGTKIDLRD-DENTLKKLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKEV  164 (171)
T ss_pred             CCCEEEEEccHHhhh-chhhhhhcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHHH
Confidence            468999999999875 2222111        12333444444333    48999999999998653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.20  E-value=0.00072  Score=45.77  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+. ....+.+         .++.+.+.+..+    ..+++++||++|.|+.+.
T Consensus       106 ~piilvgnK~Dl~~~-~~~~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~~  166 (175)
T cd01874         106 TPFLLVGTQIDLRDD-PSTIEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKNV  166 (175)
T ss_pred             CCEEEEEECHhhhhC-hhhHHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHHH
Confidence            589999999998652 2211111         122233333332    268999999999998653

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04136 Rap_like Rap-like subfamily

Probab=97.18  E-value=0.00032  Score=45.79  Aligned_cols=48  Identities=19%  Similarity=0.025  Sum_probs=30.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+ ..   .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~piilv~nK~Dl~~~~~-~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136         107 VPMVLVGNKCDLEDERV-VS---REEGQALARQWG-----CPFYETSAKSKINVDEV  154 (163)
T ss_pred             CCEEEEEECccccccce-ec---HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Confidence            47899999999874111 11   112222333222     68999999999998653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.17  E-value=0.00034  Score=49.05  Aligned_cols=47  Identities=19%  Similarity=0.116  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++++||+|+++....+.+.+.++++.+    +.   ..+++++||++|+|+.+.
T Consensus       141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~----~~---~~~i~~~Sa~~g~gi~el  187 (199)
T TIGR00101       141 LLVINKIDLAPMVGADLGVMERDAKKM----RG---EKPFIFTNLKTKEGLDTV  187 (199)
T ss_pred             EEEEEhhhccccccccHHHHHHHHHHh----CC---CCCEEEEECCCCCCHHHH
Confidence            788999999853234444444444443    22   479999999999999654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.15  E-value=0.00047  Score=45.07  Aligned_cols=52  Identities=29%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+.  ...+++...    ++...+. ....+++++||.+|.|+.+.
T Consensus       101 ~~piilv~nK~Dl~~~--~~~~~i~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  153 (160)
T cd04156         101 GVPVVLLANKQDLPGA--LTAEEITRR----FKLKKYCSDRDWYVQPCSAVTGEGLAEA  153 (160)
T ss_pred             CCCEEEEEECcccccC--cCHHHHHHH----cCCcccCCCCcEEEEecccccCCChHHH
Confidence            3579999999998641  111222222    1111111 12468999999999999653

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01893 Miro1 Miro1 subfamily

Probab=97.14  E-value=0.00058  Score=45.36  Aligned_cols=52  Identities=19%  Similarity=0.066  Sum_probs=31.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+....  ..+.+++..+.+...-   ..+++++||.+|.|+.+.
T Consensus       104 ~pviiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~l  155 (166)
T cd01893         104 VPIILVGNKSDLRDGSSQ--AGLEEEMLPIMNEFRE---IETCVECSAKTLINVSEV  155 (166)
T ss_pred             CCEEEEEEchhcccccch--hHHHHHHHHHHHHHhc---ccEEEEeccccccCHHHH
Confidence            579999999999752111  1122333333332211   138999999999998653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01865 Rab3 Rab3 subfamily

Probab=97.13  E-value=0.00051  Score=45.54  Aligned_cols=49  Identities=20%  Similarity=0.102  Sum_probs=31.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+++++.||+|+.+.....    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       106 ~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l  154 (165)
T cd01865         106 NAQVILVGNKCDMEDERVVS----SERGRQLADQLG-----FEFFEASAKENINVKQV  154 (165)
T ss_pred             CCCEEEEEECcccCcccccC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence            35799999999997521111    122233333333     47999999999998654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04163 Era Era subfamily

Probab=97.12  E-value=0.00085  Score=43.15  Aligned_cols=48  Identities=29%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+ ......+..+.+..   ...    ..+++++|+.++.++.+
T Consensus       112 ~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~~~~  159 (168)
T cd04163         112 TPVILVLNKIDLVK-DKEDLLPLLEKLKE---LGP----FAEIFPISALKGENVDE  159 (168)
T ss_pred             CCEEEEEEchhccc-cHHHHHHHHHHHHh---ccC----CCceEEEEeccCCChHH
Confidence            46899999999874 23333333333222   111    36899999999999855

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04142 RRP22 RRP22 subfamily

Probab=97.11  E-value=0.00052  Score=47.69  Aligned_cols=50  Identities=22%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .++|++.||+|+.+.   +... .++++.+.++. +   .++++++||.+|.|+.+.-
T Consensus       117 ~piiivgNK~Dl~~~---~~~~-~~~~~~~~~~~-~---~~~~~e~Sak~g~~v~~lf  166 (198)
T cd04142         117 PPIVVVGNKRDQQRH---RFAP-RHVLSVLVRKS-W---KCGYLECSAKYNWHILLLF  166 (198)
T ss_pred             CCEEEEEECcccccc---cccc-HHHHHHHHHHh-c---CCcEEEecCCCCCCHHHHH
Confidence            478999999999641   1111 12233333222 1   3789999999999997753

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.10  E-value=0.00063  Score=46.41  Aligned_cols=52  Identities=19%  Similarity=0.080  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+++++.||+|+.+..  ..    +++...+.-..+.+....++++||.+|+|+.+.
T Consensus       118 ~~piilv~NK~Dl~~~~--~~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~  169 (181)
T PLN00223        118 DAVLLVFANKQDLPNAM--NA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
T ss_pred             CCCEEEEEECCCCCCCC--CH----HHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence            45799999999986421  11    222333311112223356789999999998654

>cd00880 Era_like Era (E

Probab=97.10  E-value=0.001  Score=42.00  Aligned_cols=52  Identities=19%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .-.++|+++||+|++..  ........... ..   .......+++++||.+|.|+.+
T Consensus       103 ~~~~~ivv~nK~D~~~~--~~~~~~~~~~~-~~---~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880         103 RGKPVLLVLNKIDLLPE--EEEEELLELRL-LI---LLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             cCCeEEEEEEccccCCh--hhHHHHHHHHH-hh---cccccCCceEEEeeeccCCHHH
Confidence            34578999999999852  22221111001 11   1111357999999999998754

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK01889 GTPase RsgA; Reviewed

Probab=97.10  E-value=0.00054  Score=52.00  Aligned_cols=51  Identities=24%  Similarity=0.328  Sum_probs=33.3

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      |+..|+++ |+++||+|+++. .+   +..+.+..+    .   ...+++++|+.+|.|+.+.
T Consensus       138 a~~~~i~p-iIVLNK~DL~~~-~~---~~~~~~~~~----~---~g~~Vi~vSa~~g~gl~~L  188 (356)
T PRK01889        138 AWESGAEP-VIVLTKADLCED-AE---EKIAEVEAL----A---PGVPVLAVSALDGEGLDVL  188 (356)
T ss_pred             HHHcCCCE-EEEEEChhcCCC-HH---HHHHHHHHh----C---CCCcEEEEECCCCccHHHH
Confidence            44578876 678999999862 11   111222222    1   1368999999999998664

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=97.10  E-value=0.0006  Score=53.11  Aligned_cols=45  Identities=31%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -++.|+++||+|+.+ .++.       ++.+.+..+     .+++|+||.+|.|+.+.
T Consensus       274 ~kP~IVV~NK~DL~~-~~e~-------l~~l~~~l~-----~~i~~iSA~tgeGI~eL  318 (424)
T PRK12297        274 ERPQIVVANKMDLPE-AEEN-------LEEFKEKLG-----PKVFPISALTGQGLDEL  318 (424)
T ss_pred             CCcEEEEEeCCCCcC-CHHH-------HHHHHHHhC-----CcEEEEeCCCCCCHHHH
Confidence            367899999999853 2222       222333222     47999999999998665

>cd04175 Rap1 Rap1 subgroup

Probab=97.10  E-value=0.00041  Score=45.70  Aligned_cols=48  Identities=17%  Similarity=0.023  Sum_probs=30.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.....    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  154 (164)
T cd04175         107 VPMILVGNKCDLEDERVVG----KEQGQNLARQWG-----CAFLETSAKAKINVNEI  154 (164)
T ss_pred             CCEEEEEECCcchhccEEc----HHHHHHHHHHhC-----CEEEEeeCCCCCCHHHH
Confidence            4799999999987411100    112233333333     58999999999998654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04122 Rab14 Rab14 subfamily

Probab=97.08  E-value=0.00061  Score=45.11  Aligned_cols=48  Identities=23%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+..+..    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       108 ~~iiiv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~e~  155 (166)
T cd04122         108 TVIFLIGNKADLEAQRDVT----YEEAKQFADENG-----LLFLECSAKTGENVEDA  155 (166)
T ss_pred             CeEEEEEECcccccccCcC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence            5799999999987421111    223333444333     58999999999998663

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.08  E-value=0.00033  Score=46.88  Aligned_cols=52  Identities=23%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHH--------H-HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQ--------E-IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~--------~-i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+. .....        . ..++.+.+.+..+.    .+++++||++|.|+.+.
T Consensus       105 ~piilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~l  165 (173)
T cd04130         105 APIILVGTQADLRTD-VNVLIQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKEV  165 (173)
T ss_pred             CCEEEEeeChhhccC-hhHHHHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHHH
Confidence            578999999998742 11100        0 11233444444432    48999999999998653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.08  E-value=0.00032  Score=47.29  Aligned_cols=53  Identities=21%  Similarity=0.149  Sum_probs=33.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||.|+.+..........++.+.+.+..+.    .+++++||.+|.|+.+.
T Consensus       106 ~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132         106 TPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEEV  158 (187)
T ss_pred             CCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHHH
Confidence            479999999998741110000112334444444443    38999999999999764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=97.07  E-value=0.0011  Score=51.10  Aligned_cols=50  Identities=16%  Similarity=0.220  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -++.|+++||+|+.+  ...+.   +.++.+.+..++   ..+++|+||++|.|+.+.
T Consensus       275 ~kP~IlVlNKiDl~~--~~el~---~~l~~l~~~~~~---~~~Vi~ISA~tg~GIdeL  324 (390)
T PRK12298        275 EKPRWLVFNKIDLLD--EEEAE---ERAKAIVEALGW---EGPVYLISAASGLGVKEL  324 (390)
T ss_pred             CCCEEEEEeCCccCC--hHHHH---HHHHHHHHHhCC---CCCEEEEECCCCcCHHHH
Confidence            367899999999874  22222   223333333332   237899999999999764

>cd04158 ARD1 ARD1 subfamily

Probab=97.07  E-value=0.0004  Score=46.41  Aligned_cols=51  Identities=18%  Similarity=0.138  Sum_probs=31.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF-RDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.  ..    .++++.+++..++ ......++++||++|.|+.+.
T Consensus       101 ~piilv~NK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158         101 ALLLIFANKQDVAGA--LS----VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             CCEEEEEeCcCcccC--CC----HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            579999999998641  11    1223333321111 112357899999999999764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.07  E-value=0.00083  Score=53.39  Aligned_cols=63  Identities=29%  Similarity=0.356  Sum_probs=47.2

Q ss_pred             CceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCCCC
Q psy15201          7 GKSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTPSQ   73 (97)
Q Consensus         7 ~~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~~~   73 (97)
                      .||-.+|.++ ||||||+|+.+   .|.+++..++..++-.++-..+  +.|++..||++|.--..+..
T Consensus       114 kKAl~~gL~P-IVVvNKiDrp~---Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~  178 (603)
T COG1217         114 KKALALGLKP-IVVINKIDRPD---ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPED  178 (603)
T ss_pred             HHHHHcCCCc-EEEEeCCCCCC---CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccc
Confidence            3677789987 78899999875   5677778888887766664422  47999999999986555543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=97.04  E-value=0.00014  Score=49.62  Aligned_cols=49  Identities=31%  Similarity=0.470  Sum_probs=30.5

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+|+ ++|+++||+|...  +..+..-.+++.+.+   +     +|++|+||.+|.|+.+
T Consensus       103 e~g~-P~vvvlN~~D~a~--~~g~~id~~~Ls~~L---g-----~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen  103 ELGI-PVVVVLNKMDEAE--RKGIEIDAEKLSERL---G-----VPVIPVSARTGEGIDE  151 (156)
T ss_dssp             HTTS-SEEEEEETHHHHH--HTTEEE-HHHHHHHH---T-----S-EEEEBTTTTBTHHH
T ss_pred             HcCC-CEEEEEeCHHHHH--HcCCEECHHHHHHHh---C-----CCEEEEEeCCCcCHHH
Confidence            4665 6999999999763  111110112333333   4     6999999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK12288 GTPase RsgA; Reviewed

Probab=97.03  E-value=0.0013  Score=49.86  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..|+ +.|+++||+|+++. ++ ...+.+ ....++..+     .+++++||.+|.|+.+.
T Consensus       148 ~~~i-~~VIVlNK~DL~~~-~~-~~~~~~-~~~~y~~~g-----~~v~~vSA~tg~GideL  199 (347)
T PRK12288        148 TLGI-EPLIVLNKIDLLDD-EG-RAFVNE-QLDIYRNIG-----YRVLMVSSHTGEGLEEL  199 (347)
T ss_pred             hcCC-CEEEEEECccCCCc-HH-HHHHHH-HHHHHHhCC-----CeEEEEeCCCCcCHHHH
Confidence            3565 45789999999852 21 122222 222334444     48999999999998664

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.02  E-value=0.00088  Score=45.20  Aligned_cols=51  Identities=22%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||.|+.+- . ..++    +...+...........++|+||.+|.|+.+.
T Consensus       115 ~piilv~NK~Dl~~~-~-~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177      115 AVILVFANKQDLPDA-M-KAAE----ITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             CcEEEEEeCcCcccC-C-CHHH----HHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            479999999998741 1 1112    2222211112223467889999999999654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04176 Rap2 Rap2 subgroup

Probab=97.02  E-value=0.00062  Score=44.68  Aligned_cols=48  Identities=17%  Similarity=0.098  Sum_probs=30.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+...  ..  .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~piviv~nK~Dl~~~~~--~~--~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  154 (163)
T cd04176         107 VPIILVGNKVDLESERE--VS--SAEGRALAEEWG-----CPFMETSAKSKTMVNEL  154 (163)
T ss_pred             CCEEEEEECccchhcCc--cC--HHHHHHHHHHhC-----CEEEEecCCCCCCHHHH
Confidence            47899999999864111  11  111222222222     58999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.02  E-value=0.0011  Score=42.42  Aligned_cols=50  Identities=18%  Similarity=0.066  Sum_probs=30.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+.  ...+++    ...+..........+++++||.+|.|+.+
T Consensus       102 ~p~iiv~nK~D~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  151 (159)
T cd04159         102 IPLLVLGNKNDLPGA--LSVDEL----IEQMNLKSITDREVSCYSISCKEKTNIDI  151 (159)
T ss_pred             CCEEEEEeCccccCC--cCHHHH----HHHhCcccccCCceEEEEEEeccCCChHH
Confidence            468999999998752  111111    11111001112347899999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=97.01  E-value=0.00084  Score=45.61  Aligned_cols=50  Identities=20%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+. +.+       ++..++...... ....+++|+||.+|.|+.+.
T Consensus       110 ~p~iiv~NK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152         110 VPVLVLANKQDLPNALSVS-------EVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             CcEEEEEECcCccccCCHH-------HHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            579999999998641 111       122222111111 12367999999999998654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01868 Rab11_like Rab11-like

Probab=97.00  E-value=0.0007  Score=44.52  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=30.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+++++.||.|+.+..+..    .++.+.+.+..     ..+++++||.+|.|+.+
T Consensus       109 ~pi~vv~nK~Dl~~~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~  155 (165)
T cd01868         109 IVIMLVGNKSDLRHLRAVP----TEEAKAFAEKN-----GLSFIETSALDGTNVEE  155 (165)
T ss_pred             CeEEEEEECccccccccCC----HHHHHHHHHHc-----CCEEEEEECCCCCCHHH
Confidence            5799999999987421111    12333333332     26899999999999865

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=97.00  E-value=0.00056  Score=45.11  Aligned_cols=49  Identities=24%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++++++||+|+..  .....+..  ......  .   ...+++++||.+|.|+.+.
T Consensus       120 ~~p~ivv~NK~Dl~~--~~~~~~~~--~~~~~~--~---~~~~~~~~Sa~~~~gl~~l  168 (176)
T cd01881         120 AKPVIYVLNKIDLDD--AEELEEEL--VRELAL--E---EGAEVVPISAKTEEGLDEL  168 (176)
T ss_pred             hCCeEEEEEchhcCc--hhHHHHHH--HHHHhc--C---CCCCEEEEehhhhcCHHHH
Confidence            468999999999974  22222111  111111  1   2367999999999998653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.00  E-value=0.00086  Score=45.11  Aligned_cols=50  Identities=24%  Similarity=0.161  Sum_probs=32.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.  .......++...+.++.+     .+++++||.+|.|+.+.
T Consensus       107 ~~iilVgnK~Dl~~~--~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~l  156 (170)
T cd04108         107 VLLFLVGTKKDLSSP--AQYALMEQDAIKLAAEMQ-----AEYWSVSALSGENVREF  156 (170)
T ss_pred             CeEEEEEEChhcCcc--ccccccHHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            458999999998742  111112233344444333     58899999999998764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00879 Sar1 Sar1 subfamily

Probab=96.99  E-value=0.00067  Score=45.84  Aligned_cols=51  Identities=22%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC-----------CCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF-----------RDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~-----------~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+ . ...++    ++.+++....           .....+++++||.+|.|+.+.
T Consensus       121 ~pvivv~NK~Dl~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~  182 (190)
T cd00879         121 VPFLILGNKIDLPG-A-VSEEE----LRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA  182 (190)
T ss_pred             CCEEEEEeCCCCCC-C-cCHHH----HHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHH
Confidence            57999999999864 1 11122    2333321110           012367999999999998654

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04124 RabL2 RabL2 subfamily

Probab=96.98  E-value=0.0017  Score=42.92  Aligned_cols=45  Identities=22%  Similarity=0.159  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+   ..    .++...+.+..     ..+++++||.+|.|+.+.
T Consensus       105 ~p~ivv~nK~Dl~~---~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l  149 (161)
T cd04124         105 IPCIVVANKIDLDP---SV----TQKKFNFAEKH-----NLPLYYVSAADGTNVVKL  149 (161)
T ss_pred             CcEEEEEECccCch---hH----HHHHHHHHHHc-----CCeEEEEeCCCCCCHHHH
Confidence            57999999999853   11    11122222222     268999999999998654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04134 Rho3 Rho3 subfamily

Probab=96.97  E-value=0.0013  Score=44.94  Aligned_cols=53  Identities=21%  Similarity=0.226  Sum_probs=32.1

Q ss_pred             CeEEEEEEcCCCCCCCHHH--HHH------HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDR--FQE------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~--~~~------i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+..  ...      ..++...+.+..+    ..+++++||.+|.|+.+.
T Consensus       105 ~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e~  165 (189)
T cd04134         105 VKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNEA  165 (189)
T ss_pred             CCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHHH
Confidence            4799999999987521111  000      0122233333322    268999999999999764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=96.97  E-value=0.0016  Score=43.96  Aligned_cols=52  Identities=29%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+ .....+.+         .++.+.+.+..+    ..+++++||.+|.|+.+.
T Consensus       106 ~piilvgnK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i~~~  166 (174)
T cd01871         106 TPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGLKTV  166 (174)
T ss_pred             CCEEEEeeChhhcc-ChhhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCHHHH
Confidence            57999999999864 22212211         122333444333    258999999999998653

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PRK15494 era GTPase Era; Provisional

Probab=96.96  E-value=0.00083  Score=50.58  Aligned_cols=49  Identities=27%  Similarity=0.385  Sum_probs=31.1

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+. +.|+++||+|+.+  . ...    ++..+++...   ...+++|+||++|.|+.+.
T Consensus       159 ~~~-p~IlViNKiDl~~--~-~~~----~~~~~l~~~~---~~~~i~~iSAktg~gv~eL  207 (339)
T PRK15494        159 LNI-VPIFLLNKIDIES--K-YLN----DIKAFLTENH---PDSLLFPISALSGKNIDGL  207 (339)
T ss_pred             cCC-CEEEEEEhhcCcc--c-cHH----HHHHHHHhcC---CCcEEEEEeccCccCHHHH
Confidence            344 4578999999874  1 222    2333333222   2368999999999998654

>PRK00098 GTPase RsgA; Reviewed

Probab=96.95  E-value=0.00087  Score=49.61  Aligned_cols=49  Identities=24%  Similarity=0.397  Sum_probs=32.3

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++ ++|+++||+|+++ +.+..+    +....++..+     .+++++||.+|.|+.+.
T Consensus       110 ~~i-p~iIVlNK~DL~~-~~~~~~----~~~~~~~~~g-----~~v~~vSA~~g~gi~~L  158 (298)
T PRK00098        110 NGI-KPIIVLNKIDLLD-DLEEAR----ELLALYRAIG-----YDVLELSAKEGEGLDEL  158 (298)
T ss_pred             CCC-CEEEEEEhHHcCC-CHHHHH----HHHHHHHHCC-----CeEEEEeCCCCccHHHH
Confidence            354 5788999999974 222222    2223334444     48999999999998765

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.95  E-value=0.0016  Score=47.02  Aligned_cols=50  Identities=18%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .++ ++|+++||+|+.+. .. ..  .+.++ .++..+     .+++.+||.+|.|+.+..
T Consensus        66 ~~i-~~vIV~NK~DL~~~-~~-~~--~~~~~-~~~~~g-----~~v~~~SAktg~gi~eLf  115 (245)
T TIGR00157        66 QNI-EPIIVLNKIDLLDD-ED-ME--KEQLD-IYRNIG-----YQVLMTSSKNQDGLKELI  115 (245)
T ss_pred             CCC-CEEEEEECcccCCC-HH-HH--HHHHH-HHHHCC-----CeEEEEecCCchhHHHHH
Confidence            344 57889999999752 21 11  12222 333333     589999999999987653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd04140 ARHI_like ARHI subfamily

Probab=96.94  E-value=0.00077  Score=44.64  Aligned_cols=48  Identities=17%  Similarity=0.060  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+..+-..    ++...+.+..     ..+++++||.+|.|+.+.
T Consensus       109 ~piilv~nK~Dl~~~~~v~~----~~~~~~~~~~-----~~~~~e~SA~~g~~v~~~  156 (165)
T cd04140         109 IPIMLVGNKCDESHKREVSS----NEGAACATEW-----NCAFMETSAKTNHNVQEL  156 (165)
T ss_pred             CCEEEEEECccccccCeecH----HHHHHHHHHh-----CCcEEEeecCCCCCHHHH
Confidence            47899999999864111111    1112222222     258899999999998654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04155 Arl3 Arl3 subfamily

Probab=96.94  E-value=0.001  Score=44.08  Aligned_cols=51  Identities=29%  Similarity=0.314  Sum_probs=30.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+.  ...+++.+.    ++...+.....+++++||.+|+|+.+.
T Consensus       116 ~p~ivv~nK~D~~~~--~~~~~i~~~----l~~~~~~~~~~~~~~~Sa~~~~gi~~~  166 (173)
T cd04155         116 VPVLVFANKQDLATA--APAEEIAEA----LNLHDLRDRTWHIQACSAKTGEGLQEG  166 (173)
T ss_pred             CCEEEEEECCCCccC--CCHHHHHHH----cCCcccCCCeEEEEEeECCCCCCHHHH
Confidence            578999999998741  112222221    211112122357899999999998653

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=96.93  E-value=0.00086  Score=44.83  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+. +.     ..+...+.+.     ...+++++||.+|.|+.+.
T Consensus       104 ~~piiiv~nK~Dl~~~-~~-----~~~~~~~~~~-----~~~~~~e~Sa~~~~~v~~~  150 (166)
T cd00877         104 NIPIVLCGNKVDIKDR-KV-----KAKQITFHRK-----KNLQYYEISAKSNYNFEKP  150 (166)
T ss_pred             CCcEEEEEEchhcccc-cC-----CHHHHHHHHH-----cCCEEEEEeCCCCCChHHH
Confidence            4679999999998731 11     1111222222     1368999999999999765

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01863 Rab18 Rab18 subfamily

Probab=96.93  E-value=0.0015  Score=42.68  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+..... .    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~~~~iv~nK~D~~~~~~-~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  153 (161)
T cd01863         107 IVKMLVGNKIDKENREV-T----REEGLKFARKHN-----MLFIETSAKTRDGVQQA  153 (161)
T ss_pred             CcEEEEEECCccccccc-C----HHHHHHHHHHcC-----CEEEEEecCCCCCHHHH
Confidence            45789999999874211 1    122333333323     68999999999998653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=96.93  E-value=0.00094  Score=44.36  Aligned_cols=49  Identities=18%  Similarity=0.068  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.....    .++...+.+..+    ..+++++||++|.|+.+.
T Consensus       107 ~piiiv~nK~D~~~~~~~~----~~~~~~~~~~~~----~~~~~~~SA~~~~~i~~~  155 (168)
T cd04177         107 VPMVLVGNKADLEDDRQVS----REDGVSLSQQWG----NVPFYETSARKRTNVDEV  155 (168)
T ss_pred             CCEEEEEEChhccccCccC----HHHHHHHHHHcC----CceEEEeeCCCCCCHHHH
Confidence            4688999999987421111    122223333333    368999999999998653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=96.92  E-value=0.00099  Score=45.42  Aligned_cols=52  Identities=21%  Similarity=0.103  Sum_probs=31.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||.|+.+..  ..++    +...+....++.....++++||++|.|+.++
T Consensus       118 ~~piilv~NK~Dl~~~~--~~~~----i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~  169 (182)
T PTZ00133        118 DAVLLVFANKQDLPNAM--STTE----VTEKLGLHSVRQRNWYIQGCCATTAQGLYEG  169 (182)
T ss_pred             CCCEEEEEeCCCCCCCC--CHHH----HHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence            46799999999986411  1112    2222211112223457889999999999764

>cd04144 Ras2 Ras2 subfamily

Probab=96.92  E-value=0.00087  Score=45.74  Aligned_cols=48  Identities=23%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+-.    ..+...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~piilvgNK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~l  154 (190)
T cd04144         107 VPIMIVGNKCDKVYEREVS----TEEGAALARRLG-----CEFIEASAKTNVNVERA  154 (190)
T ss_pred             CCEEEEEEChhccccCccC----HHHHHHHHHHhC-----CEEEEecCCCCCCHHHH
Confidence            4789999999987411111    112233333333     58999999999998654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01875 RhoG RhoG subfamily

Probab=96.90  E-value=0.002  Score=44.20  Aligned_cols=52  Identities=23%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||.|+.+. ....+++.         ++.+.+.+..+    ..+++++||.+|.|+.+.
T Consensus       108 ~piilvgNK~DL~~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e~  168 (191)
T cd01875         108 VPILLVGTKKDLRND-ADTLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKEV  168 (191)
T ss_pred             CCEEEEEeChhhhcC-hhhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHHH
Confidence            579999999998652 11111111         22333443333    258999999999999664

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01878 HflX HflX subfamily

Probab=96.90  E-value=0.001  Score=45.60  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+.  ....       ....  .   ...+++++||.+|.|+.+.
T Consensus       154 ~~viiV~NK~Dl~~~--~~~~-------~~~~--~---~~~~~~~~Sa~~~~gi~~l  196 (204)
T cd01878         154 IPMILVLNKIDLLDD--EELE-------ERLE--A---GRPDAVFISAKTGEGLDEL  196 (204)
T ss_pred             CCEEEEEEccccCCh--HHHH-------HHhh--c---CCCceEEEEcCCCCCHHHH
Confidence            579999999999752  2111       1121  1   2368999999999998653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04114 Rab30 Rab30 subfamily

Probab=96.89  E-value=0.0011  Score=43.67  Aligned_cols=47  Identities=21%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+. .+...+..+   .+.+..     ..+++++||.+|.|+.+
T Consensus       113 ~~~i~v~NK~D~~~~-~~i~~~~~~---~~~~~~-----~~~~~~~Sa~~~~gv~~  159 (169)
T cd04114         113 VITILVGNKIDLAER-REVSQQRAE---EFSDAQ-----DMYYLETSAKESDNVEK  159 (169)
T ss_pred             CeEEEEEECcccccc-cccCHHHHH---HHHHHc-----CCeEEEeeCCCCCCHHH
Confidence            357899999998741 111111112   222211     26899999999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=96.89  E-value=0.001  Score=44.16  Aligned_cols=48  Identities=19%  Similarity=0.098  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+..    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       109 ~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  156 (167)
T cd01867         109 VERMLVGNKCDMEEKRVVS----KEEGEALADEYG-----IKFLETSAKANINVEEA  156 (167)
T ss_pred             CcEEEEEECcccccccCCC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            4789999999997411111    122333343322     58999999999998653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=96.88  E-value=0.00084  Score=44.82  Aligned_cols=48  Identities=25%  Similarity=0.244  Sum_probs=31.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       121 ~piiiv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l  168 (180)
T cd04127         121 PDIVLCGNKADLEDQRQVS----EEQAKALADKYG-----IPYFETSAATGTNVEKA  168 (180)
T ss_pred             CcEEEEEeCccchhcCccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            4689999999987411101    123344444433     58999999999998654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.85  E-value=0.0012  Score=43.07  Aligned_cols=49  Identities=20%  Similarity=0.203  Sum_probs=31.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+.....    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       110 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  158 (168)
T cd04119         110 NIVVVVCANKIDLTKHRAVS----EDEGRLWAESKG-----FKYFETSACTGEGVNEM  158 (168)
T ss_pred             CceEEEEEEchhcccccccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            36799999999987311101    122222333323     57999999999998653

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04143 Rhes_like Rhes_like subfamily

Probab=96.85  E-value=0.001  Score=48.01  Aligned_cols=51  Identities=14%  Similarity=0.045  Sum_probs=33.1

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-.++|++.||+|+....+..    .+++..++...    ...+++++||.+|.|+.+.
T Consensus       112 ~~~piIivgNK~Dl~~~~~v~----~~ei~~~~~~~----~~~~~~evSAktg~gI~el  162 (247)
T cd04143         112 VKIPMVICGNKADRDFPREVQ----RDEVEQLVGGD----ENCAYFEVSAKKNSNLDEM  162 (247)
T ss_pred             CCCcEEEEEECccchhccccC----HHHHHHHHHhc----CCCEEEEEeCCCCCCHHHH
Confidence            346899999999986411111    23344444321    1368999999999999764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG1489|consensus

Probab=96.85  E-value=0.00059  Score=51.80  Aligned_cols=51  Identities=24%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +.|.-++.++|+||+|+.+ .++.+      +.++.+.+.    +..++|+||..|+|+.++
T Consensus       308 k~L~~rp~liVaNKiD~~e-ae~~~------l~~L~~~lq----~~~V~pvsA~~~egl~~l  358 (366)
T KOG1489|consen  308 KGLADRPALIVANKIDLPE-AEKNL------LSSLAKRLQ----NPHVVPVSAKSGEGLEEL  358 (366)
T ss_pred             hhhccCceEEEEeccCchh-HHHHH------HHHHHHHcC----CCcEEEeeeccccchHHH
Confidence            3467788999999999853 22211      233333322    236999999999998654

>cd01892 Miro2 Miro2 subfamily

Probab=96.85  E-value=0.00073  Score=45.35  Aligned_cols=50  Identities=18%  Similarity=0.126  Sum_probs=31.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+. ....   ..+.+.+.+..++    .+++++||.+|.|+.+.
T Consensus       108 ~~p~iiv~NK~Dl~~~-~~~~---~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892         108 EIPCLFVAAKADLDEQ-QQRY---EVQPDEFCRKLGL----PPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             CCeEEEEEEccccccc-cccc---ccCHHHHHHHcCC----CCCEEEEeccCccHHHH
Confidence            3589999999998641 1110   1122333343443    24589999999998653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04109 Rab28 Rab28 subfamily

Probab=96.84  E-value=0.0013  Score=45.89  Aligned_cols=48  Identities=23%  Similarity=0.147  Sum_probs=31.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+    ...++.+.+.+..+     .+++++||++|+|+.+.
T Consensus       110 ~piilVgNK~DL~~~~~----v~~~~~~~~~~~~~-----~~~~~iSAktg~gv~~l  157 (215)
T cd04109         110 PLVVLVGNKTDLEHNRT----VKDDKHARFAQANG-----MESCLVSAKTGDRVNLL  157 (215)
T ss_pred             ceEEEEEECcccccccc----cCHHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence            35889999999874111    11223334444333     57899999999999765

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd00154 Rab Rab family

Probab=96.83  E-value=0.0017  Score=41.44  Aligned_cols=49  Identities=24%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+....+..    .++++.+.+..     ..+++.+||.+|.|+.+.
T Consensus       105 ~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~  153 (159)
T cd00154         105 NIPIILVGNKIDLEDQRQVS----TEEAQQFAKEN-----GLLFFETSAKTGENVEEL  153 (159)
T ss_pred             CCcEEEEEEccccccccccc----HHHHHHHHHHc-----CCeEEEEecCCCCCHHHH
Confidence            46799999999986211212    23334444432     268999999999998653

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=96.82  E-value=0.00096  Score=44.96  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.  ....  .++.+.+.+..+     .+++++||++|.|+.++
T Consensus       108 ~piilvgNK~Dl~~~--~~v~--~~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~~  155 (172)
T cd04141         108 IPLVLVGNKVDLESQ--RQVT--TEEGRNLAREFN-----CPFFETSAALRHYIDDA  155 (172)
T ss_pred             CCEEEEEEChhhhhc--CccC--HHHHHHHHHHhC-----CEEEEEecCCCCCHHHH
Confidence            479999999998641  1111  122333333333     68999999999999765

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=96.82  E-value=0.001  Score=44.47  Aligned_cols=48  Identities=19%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+....+...    ++...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~p~ilv~NK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l  154 (180)
T cd04137         107 VPIVLVGNKSDLHTQRQVST----EEGKELAESWG-----AAFLESSARENENVEEA  154 (180)
T ss_pred             CCEEEEEEchhhhhcCccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            36899999999864111111    12233333222     58999999999998654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01856 YlqF YlqF

Probab=96.82  E-value=0.0015  Score=44.15  Aligned_cols=47  Identities=13%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -++.|+++||+|+++  ++...+    ...+++..+     .+++++||.+|.|+.+.
T Consensus        46 ~k~~ilVlNK~Dl~~--~~~~~~----~~~~~~~~~-----~~vi~iSa~~~~gi~~L   92 (171)
T cd01856          46 NKPRIIVLNKADLAD--PKKTKK----WLKYFESKG-----EKVLFVNAKSGKGVKKL   92 (171)
T ss_pred             CCCEEEEEehhhcCC--hHHHHH----HHHHHHhcC-----CeEEEEECCCcccHHHH
Confidence            367899999999974  222111    112232221     47899999999988653

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=96.82  E-value=0.0019  Score=49.40  Aligned_cols=52  Identities=27%  Similarity=0.315  Sum_probs=35.8

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      |--|+.|+|.||||.+. +++.+++.++.+....   +.    .+..+|||+++.|+.+.
T Consensus       273 L~~K~~ivv~NKiD~~~-~~e~~~~~~~~l~~~~---~~----~~~~~ISa~t~~g~~~L  324 (369)
T COG0536         273 LAEKPRIVVLNKIDLPL-DEEELEELKKALAEAL---GW----EVFYLISALTREGLDEL  324 (369)
T ss_pred             hccCceEEEEeccCCCc-CHHHHHHHHHHHHHhc---CC----CcceeeehhcccCHHHH
Confidence            45578899999999765 5666666655554432   22    34445999999998654

>cd00876 Ras Ras family

Probab=96.81  E-value=0.0012  Score=42.67  Aligned_cols=48  Identities=21%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+..+..    .+++..+.++.+     .+++++||.+|.|+.+
T Consensus       104 ~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~  151 (160)
T cd00876         104 DIPIVLVGNKCDLENERQVS----KEEGKALAKEWG-----CPFIETSAKDNINIDE  151 (160)
T ss_pred             CCcEEEEEECCcccccceec----HHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Confidence            56899999999987511111    233444444333     5899999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04112 Rab26 Rab26 subfamily

Probab=96.81  E-value=0.001  Score=45.43  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~piiiv~NK~Dl~~~~~~~----~~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~l  154 (191)
T cd04112         107 VVIMLLGNKADMSGERVVK----REDGERLAKEYG-----VPFMETSAKTGLNVELA  154 (191)
T ss_pred             CcEEEEEEcccchhccccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            4799999999986311100    122333333333     58999999999998664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=96.80  E-value=0.0012  Score=42.76  Aligned_cols=49  Identities=20%  Similarity=0.150  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+..+...    +++..+.+..+     .+++++||.+|.|+.+.
T Consensus       105 ~~piiiv~nK~D~~~~~~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~gi~~~  153 (162)
T cd04123         105 NISLVIVGNKIDLERQRVVSK----SEAEEYAKSVG-----AKHFETSAKTGKGIEEL  153 (162)
T ss_pred             CCeEEEEEECcccccccCCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            357999999999874111111    22333333333     57899999999998654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=96.80  E-value=0.00099  Score=43.91  Aligned_cols=48  Identities=19%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+...-.    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       108 ~~~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~  155 (166)
T cd01869         108 VNKLLVGNKCDLTDKRVVD----YSEAQEFADELG-----IPFLETSAKNATNVEQA  155 (166)
T ss_pred             CcEEEEEEChhcccccCCC----HHHHHHHHHHcC-----CeEEEEECCCCcCHHHH
Confidence            4789999999986411111    122233333322     68999999999998754

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=96.80  E-value=0.0018  Score=46.18  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             ccCCCeEEEEEEcCCCC------C--CCHHHHHHHHHHHHHHHHHh
Q psy15201         11 VSGVNQLGVVINKLDTV------S--WSQDRFQEIVTKLGAFLKQA   48 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v------~--~~~~~~~~i~~~l~~~l~~~   48 (97)
                      ..|+ ++|+++||+|+.      +  +...++.++.+++..++++.
T Consensus       123 ~~~~-p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~  167 (222)
T cd01885         123 KERV-KPVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTY  167 (222)
T ss_pred             HcCC-CEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhc
Confidence            3566 689999999976      1  33568888888888888765

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK13768 GTPase; Provisional

Probab=96.80  E-value=0.0017  Score=47.00  Aligned_cols=52  Identities=27%  Similarity=0.351  Sum_probs=32.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHH------------------------HHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLG------------------------AFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~------------------------~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|+++||+|+++.++  .++..+.+.                        ..++..+.   ..+++|+||.++.|+.+
T Consensus       163 ~~~i~v~nK~D~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~---~~~vi~iSa~~~~gl~~  237 (253)
T PRK13768        163 LPQIPVLNKADLLSEEE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL---PVRVIPVSAKTGEGFDE  237 (253)
T ss_pred             CCEEEEEEhHhhcCchh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC---CCcEEEEECCCCcCHHH
Confidence            46899999999986322  222222221                        12333332   36899999999999865


Q ss_pred             C
Q psy15201         71 P   71 (97)
Q Consensus        71 ~   71 (97)
                      .
T Consensus       238 L  238 (253)
T PRK13768        238 L  238 (253)
T ss_pred             H
Confidence            3

>cd01861 Rab6 Rab6 subfamily

Probab=96.79  E-value=0.0013  Score=42.96  Aligned_cols=48  Identities=19%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+..+..    .++...+.+..     ..+++++||.+|.|+.+.
T Consensus       106 ~~iilv~nK~D~~~~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l  153 (161)
T cd01861         106 VIIVLVGNKTDLSDKRQVS----TEEGEKKAKEL-----NAMFIETSAKAGHNVKEL  153 (161)
T ss_pred             CEEEEEEEChhccccCccC----HHHHHHHHHHh-----CCEEEEEeCCCCCCHHHH
Confidence            5799999999986321111    12223333322     268999999999998664

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=96.79  E-value=0.00098  Score=43.69  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+  ...  ++.+.+....     ..+++++||.+|.|+.++
T Consensus       108 ~p~ilv~nK~Dl~~~~~--~~~--~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l  155 (164)
T cd04101         108 MPGVLVGNKMDLADKAE--VTD--AQAQAFAQAN-----QLKFFKTSALRGVGYEEP  155 (164)
T ss_pred             CCEEEEEECcccccccC--CCH--HHHHHHHHHc-----CCeEEEEeCCCCCChHHH
Confidence            47899999999874211  110  1112222222     258999999999998654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.75  E-value=0.0039  Score=48.78  Aligned_cols=57  Identities=33%  Similarity=0.494  Sum_probs=44.6

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC-CC-------------------CCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG-FR-------------------DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~-~~-------------------~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++. |+||++||+|.++  .++++.+.+++..+|+..+ .+                   ..-+||+.+|+.+|++++-.
T Consensus       254 ~~l-PviVvvTK~D~~~--ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL  330 (527)
T COG5258         254 MEL-PVIVVVTKIDMVP--DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL  330 (527)
T ss_pred             hcC-CEEEEEEecccCc--HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence            455 6899999999994  7899999999999887544 10                   11269999999999998543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=96.75  E-value=0.0022  Score=51.92  Aligned_cols=50  Identities=18%  Similarity=0.256  Sum_probs=33.0

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++ ++|+++||+|+.+.   ..+++.+++...+   ++.  ..+++++||.+|.|+.+
T Consensus       125 ~~l-piIvViNKiDl~~a---~~~~v~~ei~~~l---g~~--~~~vi~iSAktG~GI~~  174 (600)
T PRK05433        125 NDL-EIIPVLNKIDLPAA---DPERVKQEIEDVI---GID--ASDAVLVSAKTGIGIEE  174 (600)
T ss_pred             CCC-CEEEEEECCCCCcc---cHHHHHHHHHHHh---CCC--cceEEEEecCCCCCHHH
Confidence            455 48999999998742   2233334444433   442  24689999999999854

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=96.73  E-value=0.0011  Score=42.65  Aligned_cols=43  Identities=26%  Similarity=0.200  Sum_probs=30.1

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..+++|+++||+|+.+. ...           ..    .....+++++||.+|.|+.+.
T Consensus       106 ~~~~vi~v~nK~D~~~~-~~~-----------~~----~~~~~~~~~~Sa~~~~~v~~l  148 (157)
T cd04164         106 ADKPIIVVLNKSDLLPD-SEL-----------LS----LLAGKPIIAISAKTGEGLDEL  148 (157)
T ss_pred             cCCCEEEEEEchhcCCc-ccc-----------cc----ccCCCceEEEECCCCCCHHHH
Confidence            45789999999999852 111           11    112368999999999998653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PTZ00099 rab6; Provisional

Probab=96.73  E-value=0.0011  Score=45.27  Aligned_cols=48  Identities=15%  Similarity=0.057  Sum_probs=30.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+  ..  .++...+.+..+     ..++++||++|.|+.+.
T Consensus        86 ~piilVgNK~DL~~~~~--v~--~~e~~~~~~~~~-----~~~~e~SAk~g~nV~~l  133 (176)
T PTZ00099         86 VIIALVGNKTDLGDLRK--VT--YEEGMQKAQEYN-----TMFHETSAKAGHNIKVL  133 (176)
T ss_pred             CeEEEEEECcccccccC--CC--HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence            46899999999864111  11  112223333222     57899999999999765

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=96.71  E-value=0.001  Score=45.27  Aligned_cols=53  Identities=21%  Similarity=0.199  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHHhC----CCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAG----FRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~~~----~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.. .+.   +++++.+.- .+...    .......++|+||++|.|+.+.
T Consensus       119 ~piliv~NK~Dl~~~~~~---~~i~~~l~l-~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~  176 (184)
T smart00178      119 VPFLILGNKIDAPYAASE---DELRYALGL-TNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG  176 (184)
T ss_pred             CCEEEEEeCccccCCCCH---HHHHHHcCC-CcccccccccCCceeEEEEeecccCCChHHH
Confidence            57999999999863 122   223332220 00000    0113468999999999998653

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR01393 lepA GTP-binding protein LepA

Probab=96.71  E-value=0.0031  Score=50.94  Aligned_cols=50  Identities=22%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++ ++|+++||+|+.+.+.   +++.+++...+   ++.  ..+++++||.+|.|+.+
T Consensus       121 ~~i-piIiViNKiDl~~~~~---~~~~~el~~~l---g~~--~~~vi~vSAktG~GI~~  170 (595)
T TIGR01393       121 NDL-EIIPVINKIDLPSADP---ERVKKEIEEVI---GLD--ASEAILASAKTGIGIEE  170 (595)
T ss_pred             cCC-CEEEEEECcCCCccCH---HHHHHHHHHHh---CCC--cceEEEeeccCCCCHHH
Confidence            455 5899999999875322   23334444333   432  24689999999999854

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04110 Rab35 Rab35 subfamily

Probab=96.65  E-value=0.002  Score=44.43  Aligned_cols=49  Identities=20%  Similarity=-0.007  Sum_probs=32.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..+++++.||+|+.+... ..   .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       110 ~~piivVgNK~Dl~~~~~-~~---~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~l  158 (199)
T cd04110         110 DVCKVLVGNKNDDPERKV-VE---TEDAYKFAGQMG-----ISLFETSAKENINVEEM  158 (199)
T ss_pred             CCCEEEEEECcccccccc-cC---HHHHHHHHHHcC-----CEEEEEECCCCcCHHHH
Confidence            457899999999875211 10   122333444333     58999999999999764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01860 Rab5_related Rab5-related subfamily

Probab=96.63  E-value=0.0028  Score=41.38  Aligned_cols=48  Identities=25%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+..    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  154 (163)
T cd01860         107 IIIALVGNKADLESKRQVS----TEEAQEYADENG-----LLFFETSAKTGENVNEL  154 (163)
T ss_pred             CeEEEEEECccccccCcCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence            4689999999987311111    123334444333     58999999999998543

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01866 Rab2 Rab2 subfamily

Probab=96.63  E-value=0.002  Score=42.82  Aligned_cols=48  Identities=23%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+...    ...++...+.+..+     .+++++||.+|.|+.+.
T Consensus       110 ~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~  157 (168)
T cd01866         110 MTIMLIGNKCDLESRRE----VSYEEGEAFAKEHG-----LIFMETSAKTASNVEEA  157 (168)
T ss_pred             CcEEEEEECcccccccC----CCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            57899999999874111    01123334444333     58999999999999653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04129 Rho2 Rho2 subfamily

Probab=96.63  E-value=0.0011  Score=45.06  Aligned_cols=53  Identities=26%  Similarity=0.273  Sum_probs=33.1

Q ss_pred             CCeEEEEEEcCCCCCCCH-------HHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQ-------DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~-------~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+.+.       .++.. .++.+.+.+..+.    .+++.+||++|.|+.+.
T Consensus       105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~  164 (187)
T cd04129         105 NVPVILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGVDDV  164 (187)
T ss_pred             CCCEEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCHHHH
Confidence            468999999999864111       11111 1223334444443    58999999999999764

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.62  E-value=0.0018  Score=42.19  Aligned_cols=49  Identities=22%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+..+...    +..+.+.+..+     .+++++||.+|.|+.+.
T Consensus       105 ~~pivvv~nK~D~~~~~~~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~l  153 (164)
T smart00175      105 NVVIMLVGNKSDLEDQRQVSR----EEAEAFAEEHG-----LPFFETSAKTNTNVEEA  153 (164)
T ss_pred             CCeEEEEEEchhcccccCCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            458999999999874111111    22233344333     57999999999998653

Rab GTPases are implicated in vesicle trafficking.

>cd04147 Ras_dva Ras-dva subfamily

Probab=96.61  E-value=0.003  Score=43.41  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+. +.....  +....... ..+   ..+++++||.+|.|+.+.
T Consensus       104 ~~piilv~NK~Dl~~~-~~~v~~--~~~~~~~~-~~~---~~~~~~~Sa~~g~gv~~l  154 (198)
T cd04147         104 FVPIVVVGNKADSLEE-ERQVPA--KDALSTVE-LDW---NCGFVETSAKDNENVLEV  154 (198)
T ss_pred             CCcEEEEEEccccccc-cccccH--HHHHHHHH-hhc---CCcEEEecCCCCCCHHHH
Confidence            3579999999998751 111111  11111111 112   268999999999999765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=96.61  E-value=0.0015  Score=42.70  Aligned_cols=48  Identities=25%  Similarity=0.299  Sum_probs=31.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+..+.    ..++...+.+..+     .+++++||.+|.|+.++
T Consensus       106 ~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  153 (161)
T cd04113         106 IVVILVGNKSDLADQREV----TFLEASRFAQENG-----LLFLETSALTGENVEEA  153 (161)
T ss_pred             CeEEEEEEchhcchhccC----CHHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence            469999999998741110    1223333444333     58999999999998654

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.58  E-value=0.00096  Score=47.35  Aligned_cols=47  Identities=21%  Similarity=0.229  Sum_probs=32.1

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      =+++|||.|++++-...++...+.    .+++.   .+.||+.+|+++|+|+.+
T Consensus       145 DllVInK~DLa~~v~~dlevm~~d----a~~~n---p~~~ii~~n~ktg~G~~~  191 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARD----AKEVN---PEAPIIFTNLKTGEGLDE  191 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHH----HHHhC---CCCCEEEEeCCCCcCHHH
Confidence            478999999987533333433333    33333   358999999999999854

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.52  E-value=0.0068  Score=44.25  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++-+++|+++||+|+++  ++..+    ....+++..+     .+++++||.+|.++.+.
T Consensus        46 l~~kp~IiVlNK~DL~~--~~~~~----~~~~~~~~~~-----~~vi~iSa~~~~gi~~L   94 (276)
T TIGR03596        46 RGNKPRLIVLNKADLAD--PAVTK----QWLKYFEEKG-----IKALAINAKKGKGVKKI   94 (276)
T ss_pred             HCCCCEEEEEEccccCC--HHHHH----HHHHHHHHcC-----CeEEEEECCCcccHHHH
Confidence            34578999999999975  22222    1222233222     47899999999887543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04126 Rab20 Rab20 subfamily

Probab=96.51  E-value=0.0022  Score=45.59  Aligned_cols=57  Identities=26%  Similarity=0.238  Sum_probs=33.6

Q ss_pred             CeEEEEEEcCCCCCC-CH--------------HHHHHHHHHHHHHHHHhC-C--------CCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSW-SQ--------------DRFQEIVTKLGAFLKQAG-F--------RDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~-~~--------------~~~~~i~~~l~~~l~~~~-~--------~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+. ..              ....-..++.+.+.+..+ +        +....+++++||++|.|+.+
T Consensus       101 ~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~e  180 (220)
T cd04126         101 CLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDE  180 (220)
T ss_pred             CcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHH
Confidence            468999999998741 00              011111233444444432 1        01236899999999999976


Q ss_pred             C
Q psy15201         71 P   71 (97)
Q Consensus        71 ~   71 (97)
                      .
T Consensus       181 l  181 (220)
T cd04126         181 L  181 (220)
T ss_pred             H
Confidence            4

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=96.51  E-value=0.0012  Score=53.28  Aligned_cols=50  Identities=16%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .| .++|+++||+|+.+.  ....   ...+.+-+..+     .+++|+||.+|.|+++.-
T Consensus        98 ~~-~PiIIVlNK~Dl~~~--~~i~---~d~~~L~~~lg-----~pvv~tSA~tg~Gi~eL~  147 (591)
T TIGR00437        98 LG-IPMILALNLVDEAEK--KGIR---IDEEKLEERLG-----VPVVPTSATEGRGIERLK  147 (591)
T ss_pred             cC-CCEEEEEehhHHHHh--CCCh---hhHHHHHHHcC-----CCEEEEECCCCCCHHHHH
Confidence            34 478999999998631  1111   12223333333     589999999999997653

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=96.51  E-value=0.002  Score=53.54  Aligned_cols=51  Identities=18%  Similarity=0.263  Sum_probs=32.5

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +.+|+ ++|+++||+|+.+.  ..+.   ..++.+-+..+     .|++|+||.+|+|+++.
T Consensus       109 ~e~gi-PvIvVlNK~Dl~~~--~~i~---id~~~L~~~LG-----~pVvpiSA~~g~GIdeL  159 (772)
T PRK09554        109 LELGI-PCIVALNMLDIAEK--QNIR---IDIDALSARLG-----CPVIPLVSTRGRGIEAL  159 (772)
T ss_pred             HHcCC-CEEEEEEchhhhhc--cCcH---HHHHHHHHHhC-----CCEEEEEeecCCCHHHH
Confidence            34564 68999999998641  1111   12222333334     58999999999997543

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=96.49  E-value=0.0083  Score=37.12  Aligned_cols=50  Identities=24%  Similarity=0.161  Sum_probs=30.6

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .-.++++++||+|+.+........   .... ....    ...+++++|+.+|.|+.+
T Consensus       101 ~~~~~ivv~nk~D~~~~~~~~~~~---~~~~-~~~~----~~~~~~~~s~~~~~~i~~  150 (157)
T cd00882         101 ENIPIILVGNKIDLPEERVVSEEE---LAEQ-LAKE----LGVPYFETSAKTGENVEE  150 (157)
T ss_pred             CCCcEEEEEeccccccccchHHHH---HHHH-HHhh----cCCcEEEEecCCCCChHH
Confidence            346799999999987522211111   0111 1111    247999999999998754

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.48  E-value=0.0042  Score=45.76  Aligned_cols=49  Identities=20%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .++ ++|+++||+|+++. .+.    .. ........+     .+++++||.+|.|+.+..
T Consensus       108 ~~i-p~iIVlNK~DL~~~-~~~----~~-~~~~~~~~g-----~~v~~vSA~~g~gi~~L~  156 (287)
T cd01854         108 AGI-EPVIVLTKADLLDD-EEE----EL-ELVEALALG-----YPVLAVSAKTGEGLDELR  156 (287)
T ss_pred             cCC-CEEEEEEHHHCCCh-HHH----HH-HHHHHHhCC-----CeEEEEECCCCccHHHHH
Confidence            354 57899999999852 111    11 112222223     589999999999986643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0462|consensus

Probab=96.45  E-value=0.0043  Score=50.09  Aligned_cols=53  Identities=23%  Similarity=0.259  Sum_probs=38.6

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      |...|. .+|.++||+|+..   ++.+++..++..++   .+  ...++|.+||++|.|+.+
T Consensus       173 Afe~~L-~iIpVlNKIDlp~---adpe~V~~q~~~lF---~~--~~~~~i~vSAK~G~~v~~  225 (650)
T KOG0462|consen  173 AFEAGL-AIIPVLNKIDLPS---ADPERVENQLFELF---DI--PPAEVIYVSAKTGLNVEE  225 (650)
T ss_pred             HHHcCC-eEEEeeeccCCCC---CCHHHHHHHHHHHh---cC--CccceEEEEeccCccHHH
Confidence            444666 4799999999975   45556666666665   33  246899999999999855

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=96.44  E-value=0.0033  Score=46.01  Aligned_cols=49  Identities=16%  Similarity=0.076  Sum_probs=31.3

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE   66 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~   66 (97)
                      +..|+ +.|+++||+|+.+.+   ++++.++++..++...    ...++||||..+.
T Consensus       113 ~~~~~-p~ivviNK~D~~~a~---~~~~~~~l~~~l~~~~----~~~~~Pisa~~~f  161 (270)
T cd01886         113 DRYNV-PRIAFVNKMDRTGAD---FFRVVEQIREKLGANP----VPLQLPIGEEDDF  161 (270)
T ss_pred             HHcCC-CEEEEEECCCCCCCC---HHHHHHHHHHHhCCCc----eEEEeccccCCCc
Confidence            34565 568899999997532   3445566666553222    2578999997653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04148 RGK RGK subfamily

Probab=96.44  E-value=0.0024  Score=45.02  Aligned_cols=48  Identities=17%  Similarity=0.041  Sum_probs=30.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.  ....  .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       107 ~piilV~NK~Dl~~~--~~v~--~~~~~~~a~~~~-----~~~~e~SA~~~~gv~~l  154 (221)
T cd04148         107 RPIILVGNKSDLARS--REVS--VQEGRACAVVFD-----CKFIETSAGLQHNVDEL  154 (221)
T ss_pred             CCEEEEEEChhcccc--ceec--HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Confidence            579999999998741  1111  111222222222     58999999999999654

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.43  E-value=0.0072  Score=44.66  Aligned_cols=55  Identities=15%  Similarity=-0.008  Sum_probs=30.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC--CCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG--FRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~--~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++.++++||+|+.+. + ....+...+..-+....  ...-..+++++||.+|.|+.+.
T Consensus       173 ~~~ivv~NK~Dl~~~-~-~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L  229 (300)
T TIGR00750       173 IADIYVVNKADGEGA-T-NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDEL  229 (300)
T ss_pred             hccEEEEEcccccch-h-HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHH
Confidence            346899999999852 2 12222222211111110  0001247999999999999765

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd04133 Rop_like Rop subfamily

Probab=96.42  E-value=0.0039  Score=42.65  Aligned_cols=53  Identities=25%  Similarity=0.185  Sum_probs=33.3

Q ss_pred             CeEEEEEEcCCCCCCCHHH------HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDR------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~------~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.....      .....++.+.+.+..+.    .+++.+||.+|.|+.+.
T Consensus       106 ~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~~  164 (176)
T cd04133         106 VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKAV  164 (176)
T ss_pred             CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHHH
Confidence            5799999999996421100      00113344445544432    37999999999998654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=96.42  E-value=0.0045  Score=42.51  Aligned_cols=53  Identities=23%  Similarity=0.194  Sum_probs=33.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHH--------HHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRF--------QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~--------~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~~   71 (97)
                      .++|++.||+|+.+......        .--.++.+.+.+..+.    .+++.+||++|.| +.+.
T Consensus       110 ~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~~  171 (182)
T cd04172         110 TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRDI  171 (182)
T ss_pred             CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHHH
Confidence            57899999999864111000        0112345555555553    4899999999998 8653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04121 Rab40 Rab40 subfamily

Probab=96.41  E-value=0.0024  Score=44.17  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=33.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++-||+|+...  ...  ..++.+.+.+..+     .+++.+||.+|.|+.++
T Consensus       111 ~piilVGNK~DL~~~--~~v--~~~~~~~~a~~~~-----~~~~e~SAk~g~~V~~~  158 (189)
T cd04121         111 VPKILVGNRLHLAFK--RQV--ATEQAQAYAERNG-----MTFFEVSPLCNFNITES  158 (189)
T ss_pred             CCEEEEEECccchhc--cCC--CHHHHHHHHHHcC-----CEEEEecCCCCCCHHHH
Confidence            478999999998641  111  1234455555443     58999999999999765

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04103 Centaurin_gamma Centaurin gamma

Probab=96.38  E-value=0.0014  Score=43.75  Aligned_cols=51  Identities=10%  Similarity=-0.018  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+...++....  .++.+.+.++.+    ..+++++||++|.|+.+.
T Consensus       100 ~piilvgnK~Dl~~~~~~~v~--~~~~~~~~~~~~----~~~~~e~SAk~~~~i~~~  150 (158)
T cd04103         100 IPLILVGTQDAISESNPRVID--DARARQLCADMK----RCSYYETCATYGLNVERV  150 (158)
T ss_pred             CCEEEEeeHHHhhhcCCcccC--HHHHHHHHHHhC----CCcEEEEecCCCCCHHHH
Confidence            378999999997421111111  122333443322    368999999999998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PTZ00369 Ras-like protein; Provisional

Probab=96.37  E-value=0.0038  Score=42.50  Aligned_cols=48  Identities=21%  Similarity=0.128  Sum_probs=30.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.  ....  .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       111 ~piiiv~nK~Dl~~~--~~i~--~~~~~~~~~~~~-----~~~~e~Sak~~~gi~~~  158 (189)
T PTZ00369        111 VPMILVGNKCDLDSE--RQVS--TGEGQELAKSFG-----IPFLETSAKQRVNVDEA  158 (189)
T ss_pred             CCEEEEEECcccccc--cccC--HHHHHHHHHHhC-----CEEEEeeCCCCCCHHHH
Confidence            368999999998641  1111  112222333222     58999999999999653

>PLN03118 Rab family protein; Provisional

Probab=96.35  E-value=0.0035  Score=43.49  Aligned_cols=47  Identities=28%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++|++.||+|+....+  ..  .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       122 ~~ilv~NK~Dl~~~~~--i~--~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118        122 VKMLVGNKVDRESERD--VS--REEGMALAKEHG-----CLFLECSAKTRENVEQC  168 (211)
T ss_pred             CEEEEEECccccccCc--cC--HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            5788999999874211  10  122223333322     58999999999998765

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=96.35  E-value=0.0036  Score=49.95  Aligned_cols=47  Identities=19%  Similarity=0.265  Sum_probs=35.7

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+|-++||+|+...   ..++++++++..+   |.  +....+-+||++|.|+.+
T Consensus       130 eIiPViNKIDLP~A---dpervk~eIe~~i---Gi--d~~dav~~SAKtG~gI~~  176 (603)
T COG0481         130 EIIPVLNKIDLPAA---DPERVKQEIEDII---GI--DASDAVLVSAKTGIGIED  176 (603)
T ss_pred             EEEEeeecccCCCC---CHHHHHHHHHHHh---CC--CcchheeEecccCCCHHH
Confidence            47899999999753   3455667777776   66  346778899999999854

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=96.33  E-value=0.0022  Score=42.84  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=26.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHH--HHHHHHhCCCCCCceEEEeeeccC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKL--GAFLKQAGFRDSDIEYVPCSGLTG   65 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l--~~~l~~~~~~~~~~~iipiSA~~G   65 (97)
                      -.++++++||.|+.+..  ...++.+.+  ..+.+..+   ...+++++||.+|
T Consensus       100 ~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~---~~~~~~~~Sa~~g  148 (167)
T cd04161         100 GKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENK---SLCHIEPCSAIEG  148 (167)
T ss_pred             CCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCC---ceEEEEEeEceeC
Confidence            35799999999987521  111222211  11111111   1368999999998

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.31  E-value=0.0052  Score=48.24  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+|+||+|-.+ .+       +...+ +..+|+    -.++||||.+|.|+...
T Consensus       112 ~kpviLvvNK~D~~~-~e-------~~~~e-fyslG~----g~~~~ISA~Hg~Gi~dL  156 (444)
T COG1160         112 KKPVILVVNKIDNLK-AE-------ELAYE-FYSLGF----GEPVPISAEHGRGIGDL  156 (444)
T ss_pred             CCCEEEEEEcccCch-hh-------hhHHH-HHhcCC----CCceEeehhhccCHHHH
Confidence            378999999999653 11       11222 334566    57899999999998654

>cd04120 Rab12 Rab12 subfamily

Probab=96.31  E-value=0.0036  Score=43.87  Aligned_cols=49  Identities=20%  Similarity=0.156  Sum_probs=31.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.  ....  .++.+.+.+...    ...++.+||++|.|+.+.
T Consensus       106 ~piilVgNK~DL~~~--~~v~--~~~~~~~a~~~~----~~~~~etSAktg~gV~e~  154 (202)
T cd04120         106 AELLLVGNKLDCETD--REIS--RQQGEKFAQQIT----GMRFCEASAKDNFNVDEI  154 (202)
T ss_pred             CcEEEEEECcccccc--cccC--HHHHHHHHHhcC----CCEEEEecCCCCCCHHHH
Confidence            468999999998641  1111  122233333321    258999999999999765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01873 RhoBTB RhoBTB subfamily

Probab=96.28  E-value=0.0029  Score=43.93  Aligned_cols=52  Identities=21%  Similarity=-0.007  Sum_probs=33.1

Q ss_pred             CeEEEEEEcCCCCCCCH-H--------------HHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQ-D--------------RFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~-~--------------~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+... +              ...-..++.+.+.+..+     .+++.+||++|.|+.+.
T Consensus       121 ~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V~e~  187 (195)
T cd01873         121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGVKDV  187 (195)
T ss_pred             CCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCHHHH
Confidence            47899999999863100 0              00111234455555544     58999999999998653

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG1144|consensus

Probab=96.24  E-value=0.0051  Score=51.36  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=16.6

Q ss_pred             CCCceEEEeeeccCCCCCCC
Q psy15201         52 DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        52 ~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+.+.++|.||..|+|+..+
T Consensus       659 ~~~vsiVPTSA~sGeGipdL  678 (1064)
T KOG1144|consen  659 GETVSIVPTSAISGEGIPDL  678 (1064)
T ss_pred             cceEEeeecccccCCCcHHH
Confidence            34589999999999999654

>cd04125 RabA_like RabA-like subfamily

Probab=96.22  E-value=0.0041  Score=42.08  Aligned_cols=48  Identities=19%  Similarity=0.128  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||.|+.+...  ..  .+....+.+..+     .+++++||.+|.|+.+.
T Consensus       106 ~~~ivv~nK~Dl~~~~~--v~--~~~~~~~~~~~~-----~~~~evSa~~~~~i~~~  153 (188)
T cd04125         106 VIKVIVANKSDLVNNKV--VD--SNIAKSFCDSLN-----IPFFETSAKQSINVEEA  153 (188)
T ss_pred             CeEEEEEECCCCccccc--CC--HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            57899999999874211  00  111222333323     48999999999999654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.13  E-value=0.0068  Score=41.13  Aligned_cols=51  Identities=22%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CCCeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G~ni~~   70 (97)
                      .-.++++..||.|+.+. +.   ++    +...+....+. .....++++||.+|+|+.+
T Consensus       114 ~~~piLIl~NK~D~~~~~~~---~~----i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e  166 (175)
T PF00025_consen  114 KDIPILILANKQDLPDAMSE---EE----IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE  166 (175)
T ss_dssp             TTSEEEEEEESTTSTTSSTH---HH----HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred             ccceEEEEeccccccCcchh---hH----HHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence            34689999999998752 22   22    22222211222 3568999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.13  E-value=0.0048  Score=47.09  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.+. +..       ..+ +...++    .+++++||.+|.|+.+.
T Consensus       108 ~piilVvNK~D~~~~-~~~-------~~~-~~~lg~----~~~~~vSa~~g~gv~~l  151 (429)
T TIGR03594       108 KPVILVANKIDGKKE-DAV-------AAE-FYSLGF----GEPIPISAEHGRGIGDL  151 (429)
T ss_pred             CCEEEEEECccCCcc-ccc-------HHH-HHhcCC----CCeEEEeCCcCCChHHH
Confidence            579999999998752 111       111 223344    47899999999998543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=96.09  E-value=0.0059  Score=42.69  Aligned_cols=46  Identities=17%  Similarity=0.297  Sum_probs=29.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+. ....    +.+ .+.+..     ..+++++||++|.|+.+.
T Consensus       100 ~piilvgNK~Dl~~~-~v~~----~~~-~~~~~~-----~~~~~e~SAk~~~~v~~~  145 (200)
T smart00176      100 IPIVLCGNKVDVKDR-KVKA----KSI-TFHRKK-----NLQYYDISAKSNYNFEKP  145 (200)
T ss_pred             CCEEEEEECcccccc-cCCH----HHH-HHHHHc-----CCEEEEEeCCCCCCHHHH
Confidence            478999999998531 1111    111 222222     368999999999999665

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03108 Rab family protein; Provisional

Probab=96.07  E-value=0.0062  Score=42.41  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+++++.||+|+.+...  .  ..++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       111 ~~piiiv~nK~Dl~~~~~--~--~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e~  159 (210)
T PLN03108        111 NMTIMLIGNKCDLAHRRA--V--STEEGEQFAKEHG-----LIFMEASAKTAQNVEEA  159 (210)
T ss_pred             CCcEEEEEECccCccccC--C--CHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            357899999999864111  0  1223344444433     58999999999999764

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=96.06  E-value=0.018  Score=39.81  Aligned_cols=48  Identities=23%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             CeEEEEEEcCCCCCCCH-----------HHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc
Q psy15201         15 NQLGVVINKLDTVSWSQ-----------DRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT   64 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~-----------~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~   64 (97)
                      +++++|+||+|+....+           ...+++++.+...++..+.  ...+++++|+..
T Consensus       108 ~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~--~~p~v~~vS~~~  166 (197)
T cd04104         108 KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV--SEPPVFLVSNFD  166 (197)
T ss_pred             CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC--CCCCEEEEeCCC
Confidence            47899999999853222           2244555555555554333  346899999984

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04111 Rab39 Rab39 subfamily

Probab=96.03  E-value=0.0079  Score=42.03  Aligned_cols=48  Identities=25%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||.|+.+..+ .   ..++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       110 ~~iilvgNK~Dl~~~~~-v---~~~~~~~~~~~~~-----~~~~e~Sak~g~~v~e~  157 (211)
T cd04111         110 PVFILVGHKCDLESQRQ-V---TREEAEKLAKDLG-----MKYIETSARTGDNVEEA  157 (211)
T ss_pred             CeEEEEEEccccccccc-c---CHHHHHHHHHHhC-----CEEEEEeCCCCCCHHHH
Confidence            45788999999875111 1   1122333444333     68999999999998665

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=96.03  E-value=0.0067  Score=46.03  Aligned_cols=43  Identities=30%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+++||+|+.+  .....       ....  ++    .+++++||++|.|+.+.
T Consensus       301 ~~piIlV~NK~Dl~~--~~~v~-------~~~~--~~----~~~i~iSAktg~GI~eL  343 (351)
T TIGR03156       301 DIPQLLVYNKIDLLD--EPRIE-------RLEE--GY----PEAVFVSAKTGEGLDLL  343 (351)
T ss_pred             CCCEEEEEEeecCCC--hHhHH-------HHHh--CC----CCEEEEEccCCCCHHHH
Confidence            357999999999975  21111       1111  11    36899999999998653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=96.03  E-value=0.008  Score=47.05  Aligned_cols=44  Identities=23%  Similarity=0.276  Sum_probs=28.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+|+||+|+... +.       +...+. ..++.    ..+++||.+|.|+.+.
T Consensus       147 ~piilV~NK~Dl~~~-~~-------~~~~~~-~~g~~----~~~~iSA~~g~gi~eL  190 (472)
T PRK03003        147 KPVILAANKVDDERG-EA-------DAAALW-SLGLG----EPHPVSALHGRGVGDL  190 (472)
T ss_pred             CCEEEEEECccCCcc-ch-------hhHHHH-hcCCC----CeEEEEcCCCCCcHHH
Confidence            579999999998641 11       111121 23442    2369999999998654

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=96.02  E-value=0.004  Score=41.02  Aligned_cols=48  Identities=13%  Similarity=0.114  Sum_probs=29.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~~   71 (97)
                      .++|++.||+|+.+.  ....  .++.+.+.+..+     .+++++||.+|. |+.+.
T Consensus       107 ~piilv~nK~Dl~~~--~~v~--~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146         107 IPVILVGNKADLLHY--RQVS--TEEGEKLASELG-----CLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCEEEEEECCchHHh--CccC--HHHHHHHHHHcC-----CEEEEeCCCCCchhHHHH
Confidence            568999999998531  1111  122233333333     589999999994 77543

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=96.01  E-value=0.0089  Score=42.67  Aligned_cols=42  Identities=24%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .+++++.||+|+++  .+..       ..+.+       ..+++++||.+|.|+.+..
T Consensus       177 ~p~iiV~NK~Dl~~--~~~~-------~~~~~-------~~~~~~~SA~~g~gi~~l~  218 (233)
T cd01896         177 IPCLYVYNKIDLIS--IEEL-------DLLAR-------QPNSVVISAEKGLNLDELK  218 (233)
T ss_pred             eeEEEEEECccCCC--HHHH-------HHHhc-------CCCEEEEcCCCCCCHHHHH
Confidence            37899999999985  2211       12211       1358999999999997653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04117 Rab15 Rab15 subfamily

Probab=95.97  E-value=0.0076  Score=39.85  Aligned_cols=48  Identities=19%  Similarity=0.174  Sum_probs=30.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||.|+.+.  ....  .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       106 ~~iilvgnK~Dl~~~--~~v~--~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~  153 (161)
T cd04117         106 VQKILIGNKADEEQK--RQVG--DEQGNKLAKEYG-----MDFFETSACTNSNIKES  153 (161)
T ss_pred             CeEEEEEECcccccc--cCCC--HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            478999999998641  1111  122333333333     58999999999998653

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=95.93  E-value=0.02  Score=42.11  Aligned_cols=48  Identities=17%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++-++.|+++||+|+++  ....+    ....+++..+     .+++++||.+|.|+.+
T Consensus        49 ~~~kp~iiVlNK~DL~~--~~~~~----~~~~~~~~~~-----~~vi~vSa~~~~gi~~   96 (287)
T PRK09563         49 IGNKPRLLILNKSDLAD--PEVTK----KWIEYFEEQG-----IKALAINAKKGQGVKK   96 (287)
T ss_pred             hCCCCEEEEEEchhcCC--HHHHH----HHHHHHHHcC-----CeEEEEECCCcccHHH
Confidence            34578999999999974  32222    2223333222     4789999999988754

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.92  E-value=0.0092  Score=45.01  Aligned_cols=60  Identities=20%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+-+-. |+||||.|+-+ .+.-+.+++..+....+...-++-..|++-+||.+|.|+.+.
T Consensus       186 GimEiaD-i~vINKaD~~~-A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L  245 (323)
T COG1703         186 GIMEIAD-IIVINKADRKG-AEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDEL  245 (323)
T ss_pred             hhhhhhh-eeeEeccChhh-HHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHH
Confidence            3344433 78899999764 444455554444433211111122479999999999998654

>PRK00007 elongation factor G; Reviewed

Probab=95.92  E-value=0.0098  Score=48.75  Aligned_cols=49  Identities=18%  Similarity=0.167  Sum_probs=32.7

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG   65 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G   65 (97)
                      ++..|++ .|+++||||+.+.+   +.++.++++..+   ++. ....++|+||..|
T Consensus       123 ~~~~~~p-~iv~vNK~D~~~~~---~~~~~~~i~~~l---~~~-~~~~~ipisa~~~  171 (693)
T PRK00007        123 ADKYKVP-RIAFVNKMDRTGAD---FYRVVEQIKDRL---GAN-PVPIQLPIGAEDD  171 (693)
T ss_pred             HHHcCCC-EEEEEECCCCCCCC---HHHHHHHHHHHh---CCC-eeeEEecCccCCc
Confidence            4457775 57999999998632   444555665555   331 1357899999887

>PLN03110 Rab GTPase; Provisional

Probab=95.86  E-value=0.0068  Score=42.44  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=30.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+ .-.   ++.+.+.+..     ..+++++||.+|.|+.+.
T Consensus       118 ~piiiv~nK~Dl~~~~~-~~~---~~~~~l~~~~-----~~~~~e~SA~~g~~v~~l  165 (216)
T PLN03110        118 IVIMMAGNKSDLNHLRS-VAE---EDGQALAEKE-----GLSFLETSALEATNVEKA  165 (216)
T ss_pred             CeEEEEEEChhcccccC-CCH---HHHHHHHHHc-----CCEEEEEeCCCCCCHHHH
Confidence            47899999999864111 001   1122222222     268999999999998654

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=95.85  E-value=0.014  Score=41.87  Aligned_cols=53  Identities=21%  Similarity=0.147  Sum_probs=32.6

Q ss_pred             CeEEEEEEcCCCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDR--------FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~--------~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~~   71 (97)
                      .++|+|.||+|+.+.....        ...-.++.+.+.+..++    .+++.+||++|. |+.+.
T Consensus       118 ~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e~  179 (232)
T cd04174         118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHSI  179 (232)
T ss_pred             CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHHH
Confidence            4789999999985311000        00112345566665553    378999999997 67543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=95.83  E-value=0.013  Score=39.83  Aligned_cols=53  Identities=23%  Similarity=0.150  Sum_probs=32.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHH--H-----H-HHHHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDR--F-----Q-EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~--~-----~-~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~   70 (97)
                      -.++|++.||+|+.+.....  +     . -..++.+.+.+..+.    .+++.+||++|.| +.+
T Consensus       105 ~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~  166 (178)
T cd04131         105 NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRD  166 (178)
T ss_pred             CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHH
Confidence            35789999999986411110  0     0 012344455555443    4899999999995 755

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK09602 translation-associated GTPase; Reviewed

Probab=95.82  E-value=0.0086  Score=46.27  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=30.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -+|+|+++||+|... ....+.       .+.+. ++    .+++|+||..+.|+.+
T Consensus       217 ~KPvI~VlNK~D~~~-~~~~l~-------~i~~~-~~----~~vvpISA~~e~~l~~  260 (396)
T PRK09602        217 SKPMVIAANKADLPP-AEENIE-------RLKEE-KY----YIVVPTSAEAELALRR  260 (396)
T ss_pred             CCCEEEEEEchhccc-chHHHH-------HHHhc-CC----CcEEEEcchhhhhHHH
Confidence            489999999999763 222222       22221 33    5799999999999866

>cd01899 Ygr210 Ygr210 subfamily

Probab=95.75  E-value=0.013  Score=44.01  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ   73 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~   73 (97)
                      -+++|+++||+|+.+ .++..    +.++   ....    ..+++|+||..+.++.+...
T Consensus       214 ~KPvI~VlNK~Dl~~-~~~~~----~~l~---~~~~----~~~iI~iSA~~e~~L~~L~~  261 (318)
T cd01899         214 SKPMVIAANKADIPD-AENNI----SKLR---LKYP----DEIVVPTSAEAELALRRAAK  261 (318)
T ss_pred             CCcEEEEEEHHHccC-hHHHH----HHHH---hhCC----CCeEEEEeCcccccHHHHHH
Confidence            479999999999864 22222    1222   1112    36899999999999987653

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=95.73  E-value=0.011  Score=45.24  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|..+ .+.       ...++ ...++    ..++++||.+|.|+.+.
T Consensus       110 ~piilv~NK~D~~~-~~~-------~~~~~-~~lg~----~~~~~iSa~~g~gv~~l  153 (435)
T PRK00093        110 KPVILVVNKVDGPD-EEA-------DAYEF-YSLGL----GEPYPISAEHGRGIGDL  153 (435)
T ss_pred             CcEEEEEECccCcc-chh-------hHHHH-HhcCC----CCCEEEEeeCCCCHHHH
Confidence            47999999999754 111       11222 22344    35799999999998543

>KOG0052|consensus

Probab=95.70  E-value=0.0056  Score=47.32  Aligned_cols=45  Identities=31%  Similarity=0.615  Sum_probs=37.8

Q ss_pred             eeccCCCeEEEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDS   53 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~~~   53 (97)
                      |.+||++++|+.+||||..+  |++.|++++.+....+.++.++++.
T Consensus       137 a~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~~~~~~~g~n~~  183 (391)
T KOG0052|consen  137 AFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNPA  183 (391)
T ss_pred             hccccceeeeEEeecccccCCCccccchhhhheeeeeeeeccccCCh
Confidence            45799999999999999775  8899999998888888877777644

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=95.68  E-value=0.0077  Score=47.05  Aligned_cols=41  Identities=24%  Similarity=0.206  Sum_probs=28.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+++||+|+.+. ... .          .  .   ...+++++||++|.|+.+.
T Consensus       321 ~~piiiV~NK~DL~~~-~~~-~----------~--~---~~~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        321 DKPVIVVLNKADLTGE-IDL-E----------E--E---NGKPVIRISAKTGEGIDEL  361 (449)
T ss_pred             CCCcEEEEEhhhcccc-chh-h----------h--c---cCCceEEEEeeCCCCHHHH
Confidence            3579999999999752 110 0          1  1   1357899999999998664

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=95.64  E-value=0.0074  Score=40.13  Aligned_cols=44  Identities=16%  Similarity=-0.049  Sum_probs=26.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN   67 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n   67 (97)
                      .++|++.||+|+.+..+ ..   .++.+.+.+..     ..+++++||.++.+
T Consensus       110 ~p~iiv~nK~Dl~~~~~-~~---~~~~~~~~~~~-----~~~~~e~Sa~~~~~  153 (170)
T cd04115         110 VPRILVGNKCDLREQIQ-VP---TDLAQRFADAH-----SMPLFETSAKDPSE  153 (170)
T ss_pred             CCEEEEEECccchhhcC-CC---HHHHHHHHHHc-----CCcEEEEeccCCcC
Confidence            57999999999863110 00   12222333322     26899999999443

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.54  E-value=0.019  Score=47.22  Aligned_cols=44  Identities=23%  Similarity=0.355  Sum_probs=28.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.+ ...       ....+. ..++    ...+|+||.+|.|+.+.
T Consensus       384 ~pvIlV~NK~D~~~-~~~-------~~~~~~-~lg~----~~~~~iSA~~g~GI~eL  427 (712)
T PRK09518        384 KPVVLAVNKIDDQA-SEY-------DAAEFW-KLGL----GEPYPISAMHGRGVGDL  427 (712)
T ss_pred             CCEEEEEECccccc-chh-------hHHHHH-HcCC----CCeEEEECCCCCCchHH
Confidence            57999999999864 111       111222 2344    23579999999999653

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=95.47  E-value=0.033  Score=39.66  Aligned_cols=51  Identities=25%  Similarity=0.370  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHH--------H-HHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQE--------I-VTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~--------i-~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~   70 (97)
                      .++|++.||+|+.+ +.....+        + .++.+.+.+..+.    .+++.+||.+|.| +.+
T Consensus       106 ~piiLVgnK~DL~~-~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~----~~y~E~SAk~~~~~V~~  166 (222)
T cd04173         106 AKVVLVGCKLDMRT-DLATLRELSKQRLIPVTHEQGTVLAKQVGA----VSYVECSSRSSERSVRD  166 (222)
T ss_pred             CCEEEEEECccccc-chhhhhhhhhccCCccCHHHHHHHHHHcCC----CEEEEcCCCcCCcCHHH
Confidence            47999999999865 2211111        1 1233344444443    5899999999986 643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK12739 elongation factor G; Reviewed

Probab=95.46  E-value=0.023  Score=46.57  Aligned_cols=49  Identities=20%  Similarity=0.146  Sum_probs=32.1

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE   66 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~   66 (97)
                      +..|+ +.|+++||||+.+.+   +.++.++++..+.   +. .....+|+|+..+.
T Consensus       122 ~~~~~-p~iv~iNK~D~~~~~---~~~~~~~i~~~l~---~~-~~~~~iPis~~~~f  170 (691)
T PRK12739        122 DKYGV-PRIVFVNKMDRIGAD---FFRSVEQIKDRLG---AN-AVPIQLPIGAEDDF  170 (691)
T ss_pred             HHcCC-CEEEEEECCCCCCCC---HHHHHHHHHHHhC---CC-ceeEEecccccccc
Confidence            34676 468999999998632   4555566665553   32 12467899998776

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=95.44  E-value=0.0069  Score=40.37  Aligned_cols=44  Identities=23%  Similarity=0.033  Sum_probs=25.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHH--HHHHHHhCCCCCCceEEEeeecc
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKL--GAFLKQAGFRDSDIEYVPCSGLT   64 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l--~~~l~~~~~~~~~~~iipiSA~~   64 (97)
                      -.+++++.||+|+.+.  ....++.+.+  ..+.+     ....+++++||++
T Consensus        99 ~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~-----~~~~~~~~~Sa~~  144 (164)
T cd04162          99 DLPLVVLANKQDLPAA--RSVQEIHKELELEPIAR-----GRRWILQGTSLDD  144 (164)
T ss_pred             CCcEEEEEeCcCCcCC--CCHHHHHHHhCChhhcC-----CCceEEEEeeecC
Confidence            4579999999998641  1222222221  22211     1247889999998

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=95.43  E-value=0.013  Score=41.14  Aligned_cols=46  Identities=20%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+. +...    +++ .+.+..     ..+++++||.+|.|+.+.
T Consensus       118 ~piilvgNK~Dl~~~-~v~~----~~~-~~~~~~-----~~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071        118 IPIVLCGNKVDVKNR-QVKA----KQV-TFHRKK-----NLQYYEISAKSNYNFEKP  163 (219)
T ss_pred             CcEEEEEEchhhhhc-cCCH----HHH-HHHHhc-----CCEEEEcCCCCCCCHHHH
Confidence            479999999998631 1111    112 222222     368899999999998664

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=95.40  E-value=0.033  Score=37.46  Aligned_cols=51  Identities=18%  Similarity=0.224  Sum_probs=37.8

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..|.++.|-+|+|.|+.+  ..+++    ..+.+|.+.|-    .+|+.+|+.+..++.+.
T Consensus        87 ~~~~k~vIgvVTK~DLae--d~dI~----~~~~~L~eaGa----~~IF~~s~~d~~gv~~l  137 (148)
T COG4917          87 DIGVKKVIGVVTKADLAE--DADIS----LVKRWLREAGA----EPIFETSAVDNQGVEEL  137 (148)
T ss_pred             cccccceEEEEecccccc--hHhHH----HHHHHHHHcCC----cceEEEeccCcccHHHH
Confidence            478889999999999984  33433    34556666664    68999999998887653

>TIGR00484 EF-G translation elongation factor EF-G

Probab=95.37  E-value=0.026  Score=46.20  Aligned_cols=49  Identities=18%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE   66 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~   66 (97)
                      +..+++ +|+++||+|+.+.+   +.++.++++..+   ++. ....++|+||..|.
T Consensus       124 ~~~~~p-~ivviNK~D~~~~~---~~~~~~~i~~~l---~~~-~~~~~ipis~~~~~  172 (689)
T TIGR00484       124 NRYEVP-RIAFVNKMDKTGAN---FLRVVNQIKQRL---GAN-AVPIQLPIGAEDNF  172 (689)
T ss_pred             HHcCCC-EEEEEECCCCCCCC---HHHHHHHHHHHh---CCC-ceeEEeccccCCCc
Confidence            445664 67899999998532   455556666555   332 12468999998885

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0078|consensus

Probab=95.34  E-value=0.015  Score=41.53  Aligned_cols=49  Identities=24%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +| +.+++-||+|+.+    +...-.++-+.+...+|     +.++.+||+.|.||.+.
T Consensus       117 ~v-~~~LvGNK~D~~~----~R~V~~e~ge~lA~e~G-----~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen  117 DV-VKILVGNKCDLEE----KRQVSKERGEALAREYG-----IKFFETSAKTNFNIEEA  165 (207)
T ss_pred             CC-cEEEeeccccccc----cccccHHHHHHHHHHhC-----CeEEEccccCCCCHHHH
Confidence            44 5789999999864    11222455566666666     69999999999999764

>KOG3905|consensus

Probab=95.28  E-value=0.052  Score=41.91  Aligned_cols=54  Identities=24%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             eccCCCeEEEEEEcCCCC-------CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTV-------SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v-------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~   69 (97)
                      .-+|+ +++||++|+|.+       +|..++|+.|...++.|.-..|     ...|..|+....|++
T Consensus       219 ~NlGi-~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-----aaLiyTSvKE~KNid  279 (473)
T KOG3905|consen  219 HNLGI-PVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-----AALIYTSVKETKNID  279 (473)
T ss_pred             hcCCC-cEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-----ceeEEeecccccchH
Confidence            34888 488999999974       3777899999999998876655     588999999888874

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.17  E-value=0.046  Score=40.43  Aligned_cols=57  Identities=21%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~   71 (97)
                      +-.+-+.. |+||||.|+.     -.+....+++..+....-...  ..|++.+||.+|.|+.+.
T Consensus       163 aGimEiaD-i~vVNKaD~~-----gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL  221 (266)
T PF03308_consen  163 AGIMEIAD-IFVVNKADRP-----GADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDEL  221 (266)
T ss_dssp             TTHHHH-S-EEEEE--SHH-----HHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHH
T ss_pred             hhhhhhcc-EEEEeCCChH-----HHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHH
Confidence            33344433 7889999943     333444555555543321111  369999999999998654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG2262 HflX GTPases [General function prediction only]

Probab=94.96  E-value=0.023  Score=44.25  Aligned_cols=44  Identities=27%  Similarity=0.179  Sum_probs=29.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .++|+|.||+|++.. +..        ...+... .   . ..|+|||.+|+|+....
T Consensus       305 ~p~i~v~NKiD~~~~-~~~--------~~~~~~~-~---~-~~v~iSA~~~~gl~~L~  348 (411)
T COG2262         305 IPIILVLNKIDLLED-EEI--------LAELERG-S---P-NPVFISAKTGEGLDLLR  348 (411)
T ss_pred             CCEEEEEecccccCc-hhh--------hhhhhhc-C---C-CeEEEEeccCcCHHHHH
Confidence            689999999998862 221        1112111 1   1 57999999999986653

>COG0218 Predicted GTPase [General function prediction only]

Probab=94.89  E-value=0.069  Score=38.00  Aligned_cols=55  Identities=20%  Similarity=0.175  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-CCceEEEeeeccCCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD-SDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~iipiSA~~G~ni~~~   71 (97)
                      ..|+ +++|++||+|.++  .....+....+...+   .+.+ ....++..|+..+.|+++.
T Consensus       133 ~~~i-~~~vv~tK~DKi~--~~~~~k~l~~v~~~l---~~~~~~~~~~~~~ss~~k~Gi~~l  188 (200)
T COG0218         133 ELGI-PVIVVLTKADKLK--KSERNKQLNKVAEEL---KKPPPDDQWVVLFSSLKKKGIDEL  188 (200)
T ss_pred             HcCC-CeEEEEEccccCC--hhHHHHHHHHHHHHh---cCCCCccceEEEEecccccCHHHH
Confidence            3566 4789999999996  333333334444333   3322 2223888899999887664

>KOG1143|consensus

Probab=94.76  E-value=0.061  Score=42.28  Aligned_cols=59  Identities=24%  Similarity=0.385  Sum_probs=42.3

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC---------------------CCCceEEEeeeccCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR---------------------DSDIEYVPCSGLTGEN   67 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~---------------------~~~~~iipiSA~~G~n   67 (97)
                      ++.|.+ ++.++++|||+++  ..-++.+..++..++.+.|+.                     +.-+||+.+|+.+|++
T Consensus       299 ~~AL~i-PfFvlvtK~Dl~~--~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGeg  375 (591)
T KOG1143|consen  299 IAALNI-PFFVLVTKMDLVD--RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEG  375 (591)
T ss_pred             HHHhCC-CeEEEEEeecccc--chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccc
Confidence            345677 5778899999995  455666777777777665542                     2336999999999997


Q ss_pred             CCC
Q psy15201         68 LTT   70 (97)
Q Consensus        68 i~~   70 (97)
                      +..
T Consensus       376 l~l  378 (591)
T KOG1143|consen  376 LRL  378 (591)
T ss_pred             hhH
Confidence            643

>PRK11058 GTPase HflX; Provisional

Probab=94.76  E-value=0.038  Score=43.06  Aligned_cols=45  Identities=20%  Similarity=0.073  Sum_probs=28.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .++|+++||+|+.+......       ..  ...++    ..++++||.+|.|+.+..
T Consensus       310 ~pvIiV~NKiDL~~~~~~~~-------~~--~~~~~----~~~v~ISAktG~GIdeL~  354 (426)
T PRK11058        310 IPTLLVMNKIDMLDDFEPRI-------DR--DEENK----PIRVWLSAQTGAGIPLLF  354 (426)
T ss_pred             CCEEEEEEcccCCCchhHHH-------HH--HhcCC----CceEEEeCCCCCCHHHHH
Confidence            57899999999975211111       11  11122    125889999999997653

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=94.22  E-value=0.035  Score=45.58  Aligned_cols=49  Identities=27%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+|++ +|+++|++|..+..--+++  .+++++.+   |     +|++|+||.+|.|+++
T Consensus       106 E~g~p-~ilaLNm~D~A~~~Gi~ID--~~~L~~~L---G-----vPVv~tvA~~g~G~~~  154 (653)
T COG0370         106 ELGIP-MILALNMIDEAKKRGIRID--IEKLSKLL---G-----VPVVPTVAKRGEGLEE  154 (653)
T ss_pred             HcCCC-eEEEeccHhhHHhcCCccc--HHHHHHHh---C-----CCEEEEEeecCCCHHH
Confidence            37886 9999999996531000111  23334333   5     6999999999999644

>COG2229 Predicted GTPase [General function prediction only]

Probab=94.05  E-value=0.075  Score=37.42  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=31.3

Q ss_pred             CeEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -|++|++||.|+-+ |+.+.+.       ++++...   .+.|+|+++|..+++..+
T Consensus       122 ip~vVa~NK~DL~~a~ppe~i~-------e~l~~~~---~~~~vi~~~a~e~~~~~~  168 (187)
T COG2229         122 IPVVVAINKQDLFDALPPEKIR-------EALKLEL---LSVPVIEIDATEGEGARD  168 (187)
T ss_pred             CCEEEEeeccccCCCCCHHHHH-------HHHHhcc---CCCceeeeecccchhHHH
Confidence            47999999999986 4444333       3333221   247999999998887643

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=93.97  E-value=0.044  Score=39.51  Aligned_cols=15  Identities=27%  Similarity=0.632  Sum_probs=10.3

Q ss_pred             eEEEeeeccCCCCCC
Q psy15201         56 EYVPCSGLTGENLTT   70 (97)
Q Consensus        56 ~iipiSA~~G~ni~~   70 (97)
                      .++|+|+.+++++.+
T Consensus       213 ~f~pls~~~~~~~~~  227 (238)
T PF03029_consen  213 RFIPLSSKDGEGMEE  227 (238)
T ss_dssp             --EE-BTTTTTTHHH
T ss_pred             eEEEEECCChHHHHH
Confidence            899999999998754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=93.96  E-value=0.11  Score=41.15  Aligned_cols=53  Identities=26%  Similarity=0.384  Sum_probs=41.5

Q ss_pred             ccCCCeEEEEEEcCCCC-------CCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTV-------SWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v-------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~   69 (97)
                      -||| +++||++|.|..       +|.+++|+.|...++.+.-+.|     ..+|.+|.....|+.
T Consensus       194 nlGi-pi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-----AsL~yts~~~~~n~~  253 (472)
T PF05783_consen  194 NLGI-PIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-----ASLIYTSVKEEKNLD  253 (472)
T ss_pred             ccCc-ceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CeEEEeeccccccHH
Confidence            3788 699999999954       3778889999888888775554     688888887776664

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=93.95  E-value=0.075  Score=40.68  Aligned_cols=42  Identities=26%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      ++.++++||+|+..  .+       ++..+.+.       ...+|+||..|.|+++..
T Consensus       240 ~p~l~v~NKiD~~~--~e-------~~~~l~~~-------~~~v~isa~~~~nld~L~  281 (365)
T COG1163         240 KPALYVVNKIDLPG--LE-------ELERLARK-------PNSVPISAKKGINLDELK  281 (365)
T ss_pred             eeeEEEEecccccC--HH-------HHHHHHhc-------cceEEEecccCCCHHHHH
Confidence            57899999999985  22       22233321       267999999999997754

>KOG0081|consensus

Probab=93.94  E-value=0.084  Score=36.97  Aligned_cols=48  Identities=23%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +.+|++-||.|+.+  +....  .++...+..+.+     .|.+..||-+|.|+.+.
T Consensus       125 PDivlcGNK~DL~~--~R~Vs--~~qa~~La~kyg-----lPYfETSA~tg~Nv~ka  172 (219)
T KOG0081|consen  125 PDIVLCGNKADLED--QRVVS--EDQAAALADKYG-----LPYFETSACTGTNVEKA  172 (219)
T ss_pred             CCEEEEcCccchhh--hhhhh--HHHHHHHHHHhC-----CCeeeeccccCcCHHHH
Confidence            45899999999864  22222  345555666666     59999999999998654

>KOG0092|consensus

Probab=93.78  E-value=0.044  Score=38.91  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -+|-||+|+.+.    .+.-.++.+.+.+..+     ..++..||.+|.|+.+
T Consensus       114 alvGNK~DL~~~----R~V~~~ea~~yAe~~g-----ll~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen  114 ALVGNKADLLER----REVEFEEAQAYAESQG-----LLFFETSAKTGENVNE  157 (200)
T ss_pred             EEecchhhhhhc----ccccHHHHHHHHHhcC-----CEEEEEecccccCHHH
Confidence            348899999751    1122355666776665     4899999999999965

>KOG0076|consensus

Probab=93.78  E-value=0.028  Score=39.52  Aligned_cols=49  Identities=27%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG-FRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~-~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++++..||-|+-+  .-..    +++...+.... .+..+.++.||||++|+|+.+
T Consensus       128 p~L~lankqd~q~--~~~~----~El~~~~~~~e~~~~rd~~~~pvSal~gegv~e  177 (197)
T KOG0076|consen  128 PVLVLANKQDLQN--AMEA----AELDGVFGLAELIPRRDNPFQPVSALTGEGVKE  177 (197)
T ss_pred             chhhhcchhhhhh--hhhH----HHHHHHhhhhhhcCCccCccccchhhhcccHHH
Confidence            5677788888764  2222    22333332211 223468999999999999854

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=93.68  E-value=0.079  Score=36.66  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=28.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+++++.||+|+.+ .+..     .+...+.+..+     ..++++||.+|.|+.+
T Consensus       114 ~~i~lv~nK~Dl~~-~~~~-----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~  158 (215)
T PTZ00132        114 IPIVLVGNKVDVKD-RQVK-----ARQITFHRKKN-----LQYYDISAKSNYNFEK  158 (215)
T ss_pred             CCEEEEEECccCcc-ccCC-----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence            46788899999864 1111     11112333222     5789999999999865

>KOG0073|consensus

Probab=93.57  E-value=0.14  Score=35.76  Aligned_cols=54  Identities=30%  Similarity=0.409  Sum_probs=33.7

Q ss_pred             eccCCCeEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.+| ++++++.||.|+.+ -+.+.+..+ -.+..+.+.     ...+++.+||.+|+++.+
T Consensus       114 rlaG-~~~Lvlank~dl~~~l~~~~i~~~-~~L~~l~ks-----~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen  114 RLAG-APLLVLANKQDLPGALSLEEISKA-LDLEELAKS-----HHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             hhcC-CceEEEEecCcCccccCHHHHHHh-hCHHHhccc-----cCceEEEEeccccccHHH
Confidence            3456 67899999999874 122222211 223333332     347999999999998754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=93.55  E-value=0.11  Score=35.68  Aligned_cols=15  Identities=40%  Similarity=0.574  Sum_probs=13.3

Q ss_pred             CCeEEEEEEcCCCCC
Q psy15201         14 VNQLGVVINKLDTVS   28 (97)
Q Consensus        14 vk~~Iv~INK~D~v~   28 (97)
                      -++.|+++||+|+++
T Consensus        30 ~kp~IlVlNK~DL~~   44 (172)
T cd04178          30 NKKLVLVLNKIDLVP   44 (172)
T ss_pred             CCCEEEEEehhhcCC
Confidence            478999999999985

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK07560 elongation factor EF-2; Reviewed

Probab=93.46  E-value=0.12  Score=42.81  Aligned_cols=59  Identities=20%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             eccCCCeEEEEEEcCCCCC--------CCHHHHHHHHHHHHHHHHHhC---------CCCCCceEEEeeeccCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVS--------WSQDRFQEIVTKLGAFLKQAG---------FRDSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~--------~~~~~~~~i~~~l~~~l~~~~---------~~~~~~~iipiSA~~G~ni~   69 (97)
                      ...|++ .|+++||||+..        ..++++.++.+++..++..+.         +.+.+-.++..||++|.+..
T Consensus       136 ~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~  211 (731)
T PRK07560        136 LRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAIS  211 (731)
T ss_pred             HHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeeccccccee
Confidence            345775 589999999762        223556666666666554331         22223346677888876654

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=93.42  E-value=0.06  Score=34.99  Aligned_cols=48  Identities=29%  Similarity=0.306  Sum_probs=32.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|++.||.|+.+.  ..+.  .++.+.+.+..+     .+++.+||.+|.|+.+
T Consensus       104 ~~~iivvg~K~D~~~~--~~v~--~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~  151 (162)
T PF00071_consen  104 DIPIIVVGNKSDLSDE--REVS--VEEAQEFAKELG-----VPYFEVSAKNGENVKE  151 (162)
T ss_dssp             TSEEEEEEETTTGGGG--SSSC--HHHHHHHHHHTT-----SEEEEEBTTTTTTHHH
T ss_pred             cccceeeecccccccc--ccch--hhHHHHHHHHhC-----CEEEEEECCCCCCHHH
Confidence            3589999999998741  1111  233455555443     6999999999999854

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=93.40  E-value=0.059  Score=42.55  Aligned_cols=45  Identities=29%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      -+++++++||.|++....         ....  +  .. ...+++++||++|+|+....
T Consensus       324 ~~~~i~v~NK~DL~~~~~---------~~~~--~--~~-~~~~~i~iSa~t~~Gl~~L~  368 (454)
T COG0486         324 KKPIIVVLNKADLVSKIE---------LESE--K--LA-NGDAIISISAKTGEGLDALR  368 (454)
T ss_pred             CCCEEEEEechhcccccc---------cchh--h--cc-CCCceEEEEecCccCHHHHH
Confidence            367899999999986211         0111  1  11 23489999999999997765

>KOG0463|consensus

Probab=91.96  E-value=0.39  Score=37.97  Aligned_cols=55  Identities=29%  Similarity=0.362  Sum_probs=39.9

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC--------------------C-CCCceEEEeeeccCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF--------------------R-DSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~--------------------~-~~~~~iipiSA~~G~ni~   69 (97)
                      |-| ++.++++|+|.|+  ...++|....+..+++..++                    . ..-+||+.+|-.+|+|+.
T Consensus       272 L~V-PVfvVVTKIDMCP--ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~  347 (641)
T KOG0463|consen  272 LHV-PVFVVVTKIDMCP--ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP  347 (641)
T ss_pred             hcC-cEEEEEEeeccCc--HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH
Confidence            445 5788999999996  55677777788888875443                    1 112588889999998874

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=91.75  E-value=0.18  Score=39.47  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=24.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~   69 (97)
                      +++|+++||+|+.+.  +        ...+.+..+     .+++++||++ .|+.
T Consensus       311 ~piIlV~NK~Dl~~~--~--------~~~~~~~~~-----~~~~~vSak~-~gI~  349 (442)
T TIGR00450       311 KPFILVLNKIDLKIN--S--------LEFFVSSKV-----LNSSNLSAKQ-LKIK  349 (442)
T ss_pred             CCEEEEEECccCCCc--c--------hhhhhhhcC-----CceEEEEEec-CCHH
Confidence            478999999999742  1        111122222     4788999998 3543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins

Probab=91.63  E-value=0.19  Score=32.49  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=18.5

Q ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201         20 VINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE   66 (97)
Q Consensus        20 ~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~   66 (97)
                      |.||+|+.. +++-+++++++       .    ...++||+||...-
T Consensus         1 AaNK~D~~~-a~~ni~kl~~~-------~----~~~~vVp~SA~aEl   35 (109)
T PF08438_consen    1 AANKADLPA-ADENIEKLKEK-------Y----PDEPVVPTSAAAEL   35 (109)
T ss_dssp             EEE-GGG-S--HHHHHHHHHH-------H----TT-EEEEE-HHHHH
T ss_pred             CCccccccc-cHhHHHHHHHh-------C----CCCceeeccHHHHH
Confidence            689999754 45555554431       1    13688999987544

; PDB: 1WXQ_A.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=91.38  E-value=0.35  Score=34.64  Aligned_cols=30  Identities=13%  Similarity=0.258  Sum_probs=19.4

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL   45 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l   45 (97)
                      .|+ +.|+++||+|+...   .+.++.++++..+
T Consensus       115 ~~~-P~iivvNK~D~~~a---~~~~~~~~i~~~~  144 (237)
T cd04168         115 LNI-PTIIFVNKIDRAGA---DLEKVYQEIKEKL  144 (237)
T ss_pred             cCC-CEEEEEECccccCC---CHHHHHHHHHHHH
Confidence            465 56889999998752   2344555555544

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0098|consensus

Probab=91.09  E-value=0.083  Score=37.66  Aligned_cols=46  Identities=24%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++++-||+|+..    +.+--+++-+.+.++-++     .+...||.+++|+.+-
T Consensus       114 ImLiGNKsDL~~----rR~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEEa  159 (216)
T KOG0098|consen  114 IMLIGNKSDLEA----RREVSKEEGEAFAREHGL-----IFMETSAKTAENVEEA  159 (216)
T ss_pred             EEEEcchhhhhc----cccccHHHHHHHHHHcCc-----eeehhhhhhhhhHHHH
Confidence            677889999874    223335677778877654     6779999999999764

>cd01850 CDC_Septin CDC/Septin

Probab=91.09  E-value=0.63  Score=34.13  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=25.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG   49 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~   49 (97)
                      .++|+|+||+|++.  ++.....++.+++.++..+
T Consensus       144 v~vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~  176 (276)
T cd01850         144 VNIIPVIAKADTLT--PEELKEFKQRIMEDIEEHN  176 (276)
T ss_pred             CCEEEEEECCCcCC--HHHHHHHHHHHHHHHHHcC
Confidence            46899999999974  5555667777877777655

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG2484|consensus

Probab=91.04  E-value=0.51  Score=37.05  Aligned_cols=31  Identities=39%  Similarity=0.654  Sum_probs=22.7

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG   49 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~   49 (97)
                      |-+++|+++||+|+|+      .+..+....||+..+
T Consensus       176 gnKkLILVLNK~DLVP------rEv~e~Wl~YLr~~~  206 (435)
T KOG2484|consen  176 GNKKLILVLNKIDLVP------REVVEKWLVYLRREG  206 (435)
T ss_pred             CCceEEEEeehhccCC------HHHHHHHHHHHHhhC
Confidence            5689999999999997      233555666676543

>KOG0094|consensus

Probab=90.88  E-value=0.59  Score=33.58  Aligned_cols=46  Identities=22%  Similarity=0.200  Sum_probs=29.7

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -+.+|-||.||++  +..+..  ++-+...+.++     +.++.+||..|.|+..
T Consensus       130 iI~LVGnKtDL~d--krqvs~--eEg~~kAkel~-----a~f~etsak~g~NVk~  175 (221)
T KOG0094|consen  130 IIFLVGNKTDLSD--KRQVSI--EEGERKAKELN-----AEFIETSAKAGENVKQ  175 (221)
T ss_pred             EEEEEcccccccc--hhhhhH--HHHHHHHHHhC-----cEEEEecccCCCCHHH
Confidence            4677889999996  322221  22222333333     6899999999999853

>KOG0072|consensus

Probab=90.68  E-value=0.44  Score=32.88  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..++|+.||+|... ...+     .++...+.....+.....|+..||.+|+|++..
T Consensus       120 a~llv~anKqD~~~-~~t~-----~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen  120 AKLLVFANKQDYSG-ALTR-----SEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             ceEEEEeccccchh-hhhH-----HHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            66889999999653 1221     122111111112223479999999999999653

>cd04169 RF3 RF3 subfamily

Probab=90.48  E-value=0.57  Score=34.18  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=18.5

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL   45 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l   45 (97)
                      .++ ++|+++||+|+...   .+.++.++++..+
T Consensus       122 ~~~-P~iivvNK~D~~~a---~~~~~~~~l~~~l  151 (267)
T cd04169         122 RGI-PIITFINKLDREGR---DPLELLDEIEEEL  151 (267)
T ss_pred             cCC-CEEEEEECCccCCC---CHHHHHHHHHHHH
Confidence            465 48899999998642   2333444555444

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1532|consensus

Probab=90.45  E-value=0.48  Score=35.96  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             eEEEEEEcCCCCC------CCHHHHHHHHHHHHH--------HHHHhCCC----CCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVS------WSQDRFQEIVTKLGA--------FLKQAGFR----DSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~------~~~~~~~~i~~~l~~--------~l~~~~~~----~~~~~iipiSA~~G~ni~~   70 (97)
                      ++|++.||.|+++      | ...|+..++.+++        +...+...    -.+...+.+||.+|.|.+.
T Consensus       183 p~ivvfNK~Dv~d~~fa~eW-m~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd  254 (366)
T KOG1532|consen  183 PFIVVFNKTDVSDSEFALEW-MTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD  254 (366)
T ss_pred             CeEEEEecccccccHHHHHH-HHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence            6899999999986      2 1233333333331        11111100    0246789999999999864

>KOG0394|consensus

Probab=89.63  E-value=0.35  Score=34.43  Aligned_cols=49  Identities=22%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      |+|++-||+|.-+ .++|.. -.++.+..-+..+    +.|.+.+||+.+.|+..
T Consensus       120 PFVilGNKiD~~~-~~~r~V-S~~~Aq~WC~s~g----nipyfEtSAK~~~NV~~  168 (210)
T KOG0394|consen  120 PFVILGNKIDVDG-GKSRQV-SEKKAQTWCKSKG----NIPYFETSAKEATNVDE  168 (210)
T ss_pred             cEEEEcccccCCC-Ccccee-eHHHHHHHHHhcC----CceeEEecccccccHHH
Confidence            6899999999854 232322 1344455555433    58999999999999965

>KOG0093|consensus

Probab=89.47  E-value=0.19  Score=34.80  Aligned_cols=46  Identities=26%  Similarity=0.241  Sum_probs=33.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~   69 (97)
                      .++|++-||+|+-+  +..+.  .++.+.+.+++||     .++..||+...|+.
T Consensus       127 aqvilvgnKCDmd~--eRvis--~e~g~~l~~~LGf-----efFEtSaK~NinVk  172 (193)
T KOG0093|consen  127 AQVILVGNKCDMDS--ERVIS--HERGRQLADQLGF-----EFFETSAKENINVK  172 (193)
T ss_pred             ceEEEEecccCCcc--ceeee--HHHHHHHHHHhCh-----HHhhhcccccccHH
Confidence            47999999999853  22211  2556677788886     77888999888874

>KOG0091|consensus

Probab=89.39  E-value=0.42  Score=33.62  Aligned_cols=47  Identities=23%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      +.+|-.|.|+.  ++.  .-..++.+.+.+..+     +.+|..||.+|.|+++..
T Consensus       119 FlLVGhKsDL~--SqR--qVt~EEaEklAa~hg-----M~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen  119 FLLVGHKSDLQ--SQR--QVTAEEAEKLAASHG-----MAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEeccccchh--hhc--cccHHHHHHHHHhcC-----ceEEEecccCCCcHHHHH
Confidence            34566899986  333  223466666766655     699999999999997754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=89.15  E-value=0.91  Score=32.68  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=19.8

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL   45 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l   45 (97)
                      +..|+ +.++++||+|+...   .+++..++++..+
T Consensus       113 ~~~~~-p~iivvNK~D~~~~---~~~~~~~~l~~~~  144 (268)
T cd04170         113 DEAGI-PRIIFINKMDRERA---DFDKTLAALQEAF  144 (268)
T ss_pred             HHcCC-CEEEEEECCccCCC---CHHHHHHHHHHHh
Confidence            34565 46789999998752   3444455555443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=88.83  E-value=0.4  Score=40.40  Aligned_cols=34  Identities=12%  Similarity=0.290  Sum_probs=23.1

Q ss_pred             cCCCeEEEEEEcCCCCC----CCH----HHHHHHHHHHHHHHH
Q psy15201         12 SGVNQLGVVINKLDTVS----WSQ----DRFQEIVTKLGAFLK   46 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~----~~~----~~~~~i~~~l~~~l~   46 (97)
                      .++ +.|+++||||+.-    .+.    .++.++.++++..+.
T Consensus       149 ~~~-p~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~  190 (843)
T PLN00116        149 ERI-RPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA  190 (843)
T ss_pred             CCC-CEEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            444 5799999999872    112    577777788875544

>KOG1490|consensus

Probab=88.55  E-value=0.6  Score=37.87  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=33.9

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +--++.|+|+||+|...  .+.+.+-.+++.+.++.-+    +++++..|..+.+|+-..
T Consensus       279 FaNK~~IlvlNK~D~m~--~edL~~~~~~ll~~~~~~~----~v~v~~tS~~~eegVm~V  332 (620)
T KOG1490|consen  279 FANKVTILVLNKIDAMR--PEDLDQKNQELLQTIIDDG----NVKVVQTSCVQEEGVMDV  332 (620)
T ss_pred             hcCCceEEEeecccccC--ccccCHHHHHHHHHHHhcc----CceEEEecccchhceeeH
Confidence            44567999999999774  1222222233333333222    379999999999998653

>KOG0097|consensus

Probab=88.34  E-value=0.47  Score=32.66  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -++++-||.|+..    +.+...++...+.+..+     .-++..||.+|.|+..
T Consensus       118 ~i~lignkadle~----qrdv~yeeak~faeeng-----l~fle~saktg~nved  163 (215)
T KOG0097|consen  118 VIFLIGNKADLES----QRDVTYEEAKEFAEENG-----LMFLEASAKTGQNVED  163 (215)
T ss_pred             EEEEecchhhhhh----cccCcHHHHHHHHhhcC-----eEEEEecccccCcHHH
Confidence            3677789999863    22223345556666655     4789999999999854

>KOG0070|consensus

Probab=87.99  E-value=0.62  Score=32.70  Aligned_cols=16  Identities=25%  Similarity=0.439  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy15201         31 QDRFQEIVTKLGAFLK   46 (97)
Q Consensus        31 ~~~~~~i~~~l~~~l~   46 (97)
                      .+|+.+.++++...+.
T Consensus        97 r~Ri~eak~eL~~~l~  112 (181)
T KOG0070|consen   97 RERIEEAKEELHRMLA  112 (181)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            5566666666655553

>KOG0395|consensus

Probab=87.87  E-value=0.49  Score=33.09  Aligned_cols=49  Identities=18%  Similarity=0.031  Sum_probs=31.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      --|+|+|.||.|+...   |. --.++.+.+.+..+     .+++.+||....|+.+.
T Consensus       108 ~~PivlVGNK~Dl~~~---R~-V~~eeg~~la~~~~-----~~f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen  108 DVPIILVGNKCDLERE---RQ-VSEEEGKALARSWG-----CAFIETSAKLNYNVDEV  156 (196)
T ss_pred             CCCEEEEEEcccchhc---cc-cCHHHHHHHHHhcC-----CcEEEeeccCCcCHHHH
Confidence            3579999999998741   11 11233334433333     57999999999887654

>PTZ00416 elongation factor 2; Provisional

Probab=87.48  E-value=1.4  Score=37.15  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=24.3

Q ss_pred             cCCCeEEEEEEcCCCC----CCC----HHHHHHHHHHHHHHHH
Q psy15201         12 SGVNQLGVVINKLDTV----SWS----QDRFQEIVTKLGAFLK   46 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v----~~~----~~~~~~i~~~l~~~l~   46 (97)
                      .++ ++|+++||||+.    ..+    ..++.++.++++..+.
T Consensus       143 ~~~-p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~  184 (836)
T PTZ00416        143 ERI-RPVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIA  184 (836)
T ss_pred             cCC-CEEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            453 689999999987    211    2577888888887765

>KOG0086|consensus

Probab=87.38  E-value=0.45  Score=33.19  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             eeccCCCe--EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201          9 SAVSGVNQ--LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus         9 ~~~lGvk~--~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +|+|--..  +|++-||-|+-+.  ....  -.+..++.+     .+..-++..||++|+|+.+
T Consensus       107 aR~lAs~nIvviL~GnKkDL~~~--R~Vt--flEAs~Faq-----Enel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen  107 ARTLASPNIVVILCGNKKDLDPE--REVT--FLEASRFAQ-----ENELMFLETSALTGENVEE  161 (214)
T ss_pred             HHhhCCCcEEEEEeCChhhcChh--hhhh--HHHHHhhhc-----ccceeeeeecccccccHHH
Confidence            34444333  5667799998641  1111  112222322     2346788999999999965

>KOG0084|consensus

Probab=87.07  E-value=0.52  Score=33.63  Aligned_cols=46  Identities=20%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCce-EEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIE-YVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~-iipiSA~~G~ni~~   70 (97)
                      +.+++-||.|+.+  .....  .++.+.+....+     .+ +.++||+.+.|+.+
T Consensus       116 ~~lLVGNK~Dl~~--~~~v~--~~~a~~fa~~~~-----~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen  116 PKLLVGNKCDLTE--KRVVS--TEEAQEFADELG-----IPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEeeccccHh--heecC--HHHHHHHHHhcC-----CcceeecccCCccCHHH
Confidence            5788899999874  11111  133355555544     35 99999999998854

>KOG4146|consensus

Probab=87.06  E-value=1.2  Score=28.18  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCceEEEeeeccC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTG   65 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~iipiSA~~G   65 (97)
                      .+|+.||+||   |             +++++..++ .+...++.||-++|
T Consensus        66 Gii~lINd~D---W-------------Ellekedy~ledgD~ivfiSTlHG  100 (101)
T KOG4146|consen   66 GIIVLINDMD---W-------------ELLEKEDYPLEDGDHIVFISTLHG  100 (101)
T ss_pred             cEEEEEeccc---h-------------hhhcccccCcccCCEEEEEEeccC
Confidence            4899999998   3             011111222 23467888998887

>TIGR00503 prfC peptide chain release factor 3

Probab=86.52  E-value=0.86  Score=36.58  Aligned_cols=28  Identities=21%  Similarity=0.171  Sum_probs=19.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFL   45 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l   45 (97)
                      .++|+++||+|+...   .+.++.++++..+
T Consensus       133 ~PiivviNKiD~~~~---~~~~ll~~i~~~l  160 (527)
T TIGR00503       133 TPIFTFMNKLDRDIR---DPLELLDEVENEL  160 (527)
T ss_pred             CCEEEEEECccccCC---CHHHHHHHHHHHh
Confidence            468999999998642   2344556666655

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=86.36  E-value=0.57  Score=27.05  Aligned_cols=14  Identities=36%  Similarity=0.368  Sum_probs=9.4

Q ss_pred             cCCCeEEEEEEcCC
Q psy15201         12 SGVNQLGVVINKLD   25 (97)
Q Consensus        12 lGvk~~Iv~INK~D   25 (97)
                      ++-+++++|+||+|
T Consensus        45 F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   45 FPNKPVIVVLNKID   58 (58)
T ss_dssp             TTTS-EEEEE--TT
T ss_pred             cCCCCEEEEEeccC
Confidence            55789999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=86.28  E-value=1.6  Score=33.08  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeee
Q psy15201         18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG   62 (97)
Q Consensus        18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA   62 (97)
                      ++++||.|+++  .+..+.+++    .+++++-   ..+|++.|.
T Consensus       149 ~ivlNK~Dlv~--~~~l~~l~~----~l~~lnp---~A~i~~~~~  184 (323)
T COG0523         149 VIVLNKTDLVD--AEELEALEA----RLRKLNP---RARIIETSY  184 (323)
T ss_pred             EEEEecccCCC--HHHHHHHHH----HHHHhCC---CCeEEEccc
Confidence            68899999996  333444433    3444332   467777665

>KOG0087|consensus

Probab=85.80  E-value=0.65  Score=33.51  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++-||.|+-.    +..--.++.+.+.+..+     ..++.+||+.+.|+.+.
T Consensus       121 vimLvGNK~DL~~----lraV~te~~k~~Ae~~~-----l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen  121 VIMLVGNKSDLNH----LRAVPTEDGKAFAEKEG-----LFFLETSALDATNVEKA  167 (222)
T ss_pred             EEEEeecchhhhh----ccccchhhhHhHHHhcC-----ceEEEecccccccHHHH
Confidence            4788999999853    11111233444444433     58899999999998653

>KOG1424|consensus

Probab=85.59  E-value=1.8  Score=35.06  Aligned_cols=45  Identities=20%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL   68 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni   68 (97)
                      +-|+.++++||.|+.+ .     +.+.....|+.+.     +++++.-||+...-.
T Consensus       204 ~~K~~~LLvNKaDLl~-~-----~qr~aWa~YF~~~-----ni~~vf~SA~~at~~  248 (562)
T KOG1424|consen  204 PSKANVLLVNKADLLP-P-----EQRVAWAEYFRQN-----NIPVVFFSALAATEQ  248 (562)
T ss_pred             cccceEEEEehhhcCC-H-----HHHHHHHHHHHhc-----CceEEEEeccccccc
Confidence            3477899999999986 1     2234455565443     379999999984433

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=85.33  E-value=0.8  Score=31.75  Aligned_cols=15  Identities=20%  Similarity=0.118  Sum_probs=12.6

Q ss_pred             CCeEEEEEEcCCCCC
Q psy15201         14 VNQLGVVINKLDTVS   28 (97)
Q Consensus        14 vk~~Iv~INK~D~v~   28 (97)
                      -.+++++.||+|+..
T Consensus       109 ~~pvliv~NK~Dl~~  123 (203)
T cd04105         109 KIPVLIACNKQDLFT  123 (203)
T ss_pred             CCCEEEEecchhhcc
Confidence            457999999999874

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=84.77  E-value=2.9  Score=29.24  Aligned_cols=53  Identities=23%  Similarity=0.169  Sum_probs=29.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      .++|++-||.|+.+......+........+-++.+     .+-|-+++.+...+...+
T Consensus       130 ~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~-----~~~i~~~c~~~~~~~~~~  182 (202)
T cd04102         130 IPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGN-----AEEINLNCTNGRLLAAGS  182 (202)
T ss_pred             ceEEEEEECccchhhcccchHHHhhHhhhHHHhcC-----CceEEEecCCcccccCCC
Confidence            47999999999974211111111122222334444     466777777777665544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=84.45  E-value=0.61  Score=31.67  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=13.0

Q ss_pred             EEEEEcCCCCCCCHH-HHHHHHHHHH
Q psy15201         18 GVVINKLDTVSWSQD-RFQEIVTKLG   42 (97)
Q Consensus        18 Iv~INK~D~v~~~~~-~~~~i~~~l~   42 (97)
                      ++++||+|+++  ++ +++++++.++
T Consensus       145 vIvlnK~D~~~--~~~~i~~~~~~ir  168 (178)
T PF02492_consen  145 VIVLNKIDLVS--DEQKIERVREMIR  168 (178)
T ss_dssp             EEEEE-GGGHH--HH--HHHHHHHHH
T ss_pred             EEEEeccccCC--hhhHHHHHHHHHH
Confidence            67899999985  33 3344444433

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=84.43  E-value=1.7  Score=34.85  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL   45 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l   45 (97)
                      +..|+ ++|+++||+|+...   .+.++.++++..+
T Consensus       128 ~~~~i-Piiv~iNK~D~~~a---~~~~~l~~i~~~l  159 (526)
T PRK00741        128 RLRDT-PIFTFINKLDRDGR---EPLELLDEIEEVL  159 (526)
T ss_pred             HhcCC-CEEEEEECCccccc---CHHHHHHHHHHHh
Confidence            34566 58999999998742   2344455555544

>COG1084 Predicted GTPase [General function prediction only]

Probab=84.11  E-value=1.5  Score=33.61  Aligned_cols=46  Identities=28%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|+|+||+|..+  +++.+++...    +...+.    ...+-+|+..|.+++.
T Consensus       281 ~p~v~V~nK~D~~~--~e~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~d~  326 (346)
T COG1084         281 APIVVVINKIDIAD--EEKLEEIEAS----VLEEGG----EEPLKISATKGCGLDK  326 (346)
T ss_pred             CCeEEEEecccccc--hhHHHHHHHH----HHhhcc----ccccceeeeehhhHHH
Confidence            68999999999984  5565555444    222222    2334567777776654

>KOG1423|consensus

Probab=84.05  E-value=1.5  Score=33.72  Aligned_cols=18  Identities=22%  Similarity=0.194  Sum_probs=15.5

Q ss_pred             ceEEEeeeccCCCCCCCC
Q psy15201         55 IEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        55 ~~iipiSA~~G~ni~~~~   72 (97)
                      ..++++||++|+|+.+..
T Consensus       246 e~vF~vSaL~G~Gikdlk  263 (379)
T KOG1423|consen  246 ERVFMVSALYGEGIKDLK  263 (379)
T ss_pred             eeEEEEecccccCHHHHH
Confidence            569999999999997764

>KOG0088|consensus

Probab=83.93  E-value=1.1  Score=31.55  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=31.8

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++|-||+|+.+    ......++.+.+.+..|     ...+..||....|+.+.
T Consensus       120 ~l~IVGNKiDLEe----eR~Vt~qeAe~YAesvG-----A~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen  120 ELLIVGNKIDLEE----ERQVTRQEAEAYAESVG-----ALYMETSAKDNVGISEL  166 (218)
T ss_pred             EEEEecCcccHHH----hhhhhHHHHHHHHHhhc-----hhheecccccccCHHHH
Confidence            3678889999853    22333455666666665     46678899998888654

>COG1161 Predicted GTPases [General function prediction only]

Probab=83.08  E-value=2.8  Score=31.50  Aligned_cols=51  Identities=16%  Similarity=0.153  Sum_probs=30.3

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..+-++.++++||.|+++  ...    .++...++....    ....+.+|+..+.+....
T Consensus        58 ~v~~k~~i~vlNK~DL~~--~~~----~~~W~~~~~~~~----~~~~~~v~~~~~~~~~~i  108 (322)
T COG1161          58 IVKEKPKLLVLNKADLAP--KEV----TKKWKKYFKKEE----GIKPIFVSAKSRQGGKKI  108 (322)
T ss_pred             HHccCCcEEEEehhhcCC--HHH----HHHHHHHHHhcC----CCccEEEEeecccCccch
Confidence            355667799999999996  222    233333333321    245577777777766443

>KOG0083|consensus

Probab=81.92  E-value=0.49  Score=32.34  Aligned_cols=45  Identities=24%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.++-||+|+..   +|.-. +++-+.+.+..+     .|++..||.+|.|++.
T Consensus       106 l~llgnk~d~a~---er~v~-~ddg~kla~~y~-----ipfmetsaktg~nvd~  150 (192)
T KOG0083|consen  106 LMLLGNKCDLAH---ERAVK-RDDGEKLAEAYG-----IPFMETSAKTGFNVDL  150 (192)
T ss_pred             Hhhhccccccch---hhccc-cchHHHHHHHHC-----CCceeccccccccHhH
Confidence            456678888752   12111 122333444444     6999999999999854

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=81.69  E-value=5.7  Score=28.65  Aligned_cols=48  Identities=25%  Similarity=0.360  Sum_probs=29.4

Q ss_pred             eEEEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC
Q psy15201         16 QLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG   65 (97)
Q Consensus        16 ~~Iv~INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G   65 (97)
                      ++-|.|+|||++.  ..++.++.+++++...+...++  +.+.+...|-+..
T Consensus       113 ~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~--~~~~~~~TSI~D~  162 (232)
T PF04670_consen  113 KVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGI--EDITFFLTSIWDE  162 (232)
T ss_dssp             EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT---TSEEEEEE-TTST
T ss_pred             eEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccc--cceEEEeccCcCc
Confidence            4778899999985  2234456666666666665554  2578888887764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=81.28  E-value=2.5  Score=32.01  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=20.2

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAF   44 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~   44 (97)
                      +.... ++++||+|+++  ++.++++++.++.+
T Consensus       172 i~~AD-~IvlnK~Dl~~--~~~l~~~~~~l~~~  201 (341)
T TIGR02475       172 LACAD-LVILNKADLLD--AAGLARVRAEIAAE  201 (341)
T ss_pred             HHhCC-EEEEeccccCC--HHHHHHHHHHHHHh
Confidence            33433 67899999994  66666666666553

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG0467|consensus

Probab=80.47  E-value=3.4  Score=35.13  Aligned_cols=54  Identities=20%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             eEEEEEEcCCCCC-----CCHH---HHHHHHHHHHHHHH-------------------HhCCCCCCceEEEeeeccCCCC
Q psy15201         16 QLGVVINKLDTVS-----WSQD---RFQEIVTKLGAFLK-------------------QAGFRDSDIEYVPCSGLTGENL   68 (97)
Q Consensus        16 ~~Iv~INK~D~v~-----~~~~---~~~~i~~~l~~~l~-------------------~~~~~~~~~~iipiSA~~G~ni   68 (97)
                      ..|+||||||+.-     .+++   +.-.+.+++...+.                   ...|.|..-.++..||+.|-++
T Consensus       126 ~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f  205 (887)
T KOG0467|consen  126 KPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGF  205 (887)
T ss_pred             ceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccc
Confidence            3699999999331     1233   33344455554443                   3346666678888999998876


Q ss_pred             C
Q psy15201         69 T   69 (97)
Q Consensus        69 ~   69 (97)
                      .
T Consensus       206 ~  206 (887)
T KOG0467|consen  206 G  206 (887)
T ss_pred             c
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
3mca_A	592	Structure Of The Dom34-Hbs1 Complex And Implication		2e-13
3p26_A	483	Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap		3e-13
3izq_1	611	Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To		4e-13
3j2k_7	439	Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ		2e-12
1r5b_A	467	Crystal Structure Analysis Of Sup35 Length = 467		3e-12
3p27_A	483	Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd		5e-12
1f60_A	458	Crystal Structure Of The Yeast Elongation Factor Co		3e-11
1jny_A	435	Crystal Structure Of Sulfolobus Solfataricus Elonga		1e-08
3agj_A	437	Crystal Structure Of Archaeal Pelota And Gtp-bound		2e-08
3vmf_A	440	Archaeal Protein Length = 440		2e-08
1zun_B	434	Crystal Structure Of A Gtp-Regulated Atp Sulfurylas		2e-04

>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIEYVPCSGLTGENLTTP 71
           G++++ V +NKLD +SWS+DRFQEI   +  FL K  GF+ S++ +VP S ++G NL   
Sbjct: 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373
Query: 72  SQVPALTSWYSGPCLLDVI 90
                L  WY GP LL  +
Sbjct: 374 DS-SDLYKWYKGPTLLSAL 391

>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G++ L + +NK+D V WSQ RF+EI +KL  +L   GF + +I +VP SG +GE +    
Sbjct: 170 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229
Query: 73  QVPALTSWYSGPCLLDVI 90
               +  WY+GP L+  +
Sbjct: 230 YTDEVRQWYNGPNLMSTL 247

>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G++ L + +NK+D V WSQ RF+EI +KL  +L   GF + +I +VP SG +GE +    
Sbjct: 304 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363
Query: 73  QVPALTSWYSGPCLLDVI 90
               +  WY+GP L+  +
Sbjct: 364 YTDEVRQWYNGPNLMSTL 381

>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 9   SAVSGVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFR-DSDIEYVPCSGLTG 65
           +  +GV  L V+INK+D  TV+WS +R++E   KL  FLK+ GF    DI ++PCSGLTG
Sbjct: 150 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTG 209
Query: 66  ENLTTPSQVPALTSWYSG 83
            NL   S       WY G
Sbjct: 210 ANLKEQSD---FCPWYIG 224

>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 5/82 (6%)
Query: 13  GVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQ-AGFRD-SDIEYVPCSGLTGENL 68
           G+N L VVINK+D  +V WS++R++E V KL  FL++ AG+   +D++Y+P S  TG+N+
Sbjct: 180 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 239
Query: 69  TTPSQVPALTSWYSGPCLLDVI 90
                  ++  WY GP LL+ +
Sbjct: 240 KDRVD-SSVCPWYQGPSLLEYL 260

>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G++ L +  NK D V WSQ RF+EI +KL  +L   GF + +I +VP SG +GE +    
Sbjct: 170 GIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229
Query: 73  QVPALTSWYSGPCL 86
               +  WY+GP L
Sbjct: 230 YTDEVRQWYNGPNL 243

>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D+V W + RFQEIV +   F+K+ G+    + +VP SG  G+N+    
Sbjct: 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI--- 200
Query: 73  QVPALTSWYSG 83
           +      WY G
Sbjct: 201 EATTNAPWYKG 211

>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13  GVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           G++QL V +NK+D     + + R++EIV ++  F++  GF  + + +VP    +G+N+T 
Sbjct: 143 GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202
Query: 71  PSQVPALTSWYSGPCL 86
            S+      WY+GP L
Sbjct: 203 KSEN---MKWYNGPTL 215

>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 13  GVNQLGVVINKLDT--VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           G+ Q+ V +NK+D   V++ Q R++ +V+ L  F+K  G++   I ++P S   G+NL  
Sbjct: 143 GIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIE 202
Query: 71  PSQVPALTSWYSGPCLLDVI 90
            S  P +  WY+GP L++ +
Sbjct: 203 RS--PNM-PWYNGPTLVEAL 219

>pdb|3VMF|A Chain A, Archaeal Protein Length = 440

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 13  GVNQLGVVINKLDT--VSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           G+ Q+ V +NK+D   V++ Q R++ +V+ L  F+K  G++   I ++P S   G+NL  
Sbjct: 146 GIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIE 205
Query: 71  PSQVPALTSWYSGPCLLDVI 90
            S  P +  WY+GP L++ +
Sbjct: 206 RS--PNM-PWYNGPTLVEAL 222

>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 9   SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
           +++ G+  + V INK D   + +  F+ I      F +   F+ +   +VP S L G+N+
Sbjct: 152 ASLLGIKHIVVAINKXDLNGFDERVFESIKADYLKFAEGIAFKPTTXAFVPXSALKGDNV 211
Query: 69  TTPSQVPALTSWYSGPCLLDVI 90
              S+    + WY+G  L +++
Sbjct: 212 VNKSE---RSPWYAGQSLXEIL 230

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	1e-36
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	2e-36
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	2e-33
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	2e-32
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	1e-29
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	2e-29
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	2e-22

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483

 Score =  127 bits (322), Expect = 1e-36
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G++ L + +NK+D V WSQ RF+EI +KL  +L   GF + +I +VP SG +GE +    
Sbjct: 170 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229

Query: 73  QVPALTSWYSGPCLLDVI 90
               +  WY+GP L+  +
Sbjct: 230 YTDEVRQWYNGPNLMSTL 247

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611

 Score =  128 bits (323), Expect = 2e-36
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G++ L + +NK+D V WSQ RF+EI +KL  +L   GF + +I +VP SG +GE +    
Sbjct: 304 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363

Query: 73  QVPALTSWYSGPCLLDVI 90
               +  WY+GP L+  +
Sbjct: 364 YTDEVRQWYNGPNLMSTL 381

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592

 Score =  119 bits (301), Expect = 2e-33
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIEYVPCSGLTGENLTTP 71
           G++++ V +NKLD +SWS+DRFQEI   +  FL K  GF+ S++ +VP S ++G NL   
Sbjct: 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373

Query: 72  SQVPALTSWYSGPCLLDVI 90
                L  WY GP LL  +
Sbjct: 374 DS-SDLYKWYKGPTLLSAL 391

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435

 Score =  115 bits (290), Expect = 2e-32
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 13  GVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           G++QL V +NK+D     + + R++EIV ++  F++  GF  + + +VP    +G+N+T 
Sbjct: 143 GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202

Query: 71  PSQVPALTSWYSGPCLLDVI 90
            S       WY+GP L + +
Sbjct: 203 KS---ENMKWYNGPTLEEYL 219

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467

 Score =  108 bits (272), Expect = 1e-29
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 5/82 (6%)

Query: 13  GVNQLGVVINKLD--TVSWSQDRFQEIVTKLGAFLKQ-AGF-RDSDIEYVPCSGLTGENL 68
           G+N L VVINK+D  +V WS++R++E V KL  FL++ AG+   +D++Y+P S  TG+N+
Sbjct: 180 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 239

Query: 69  TTPSQVPALTSWYSGPCLLDVI 90
                  ++  WY GP LL+ +
Sbjct: 240 KDRVD-SSVCPWYQGPSLLEYL 260

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458

 Score =  107 bits (270), Expect = 2e-29
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D+V W + RFQEIV +   F+K+ G+    + +VP SG  G+N+   +
Sbjct: 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203

Query: 73  Q---------VPALTSWYSGPCLLDVI 90
                              G  LL+ I
Sbjct: 204 TNAPWYKGWEKETKAGVVKGKTLLEAI 230

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434

 Score = 88.5 bits (220), Expect = 2e-22
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+  + V INK+D   + +  F+ I      F +   F+ + + +VP S L G+N+   S
Sbjct: 156 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215

Query: 73  QVPALTSWYSGPCLLD 88
                + WY+G  L++
Sbjct: 216 ---ERSPWYAGQSLME 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.64
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.61
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.59
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.56
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.56
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.56
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.56
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.55
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.04
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.95
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.71
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.52
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.42
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.38
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.3
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.23
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.16
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.08
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.05
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.01
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.74
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.73
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.67
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.67
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.63
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.63
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.61
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.59
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.58
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.57
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.54
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.54
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.51
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.48
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.48
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.46
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.46
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.45
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.45
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.44
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.43
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.42
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.4
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.4
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.4
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.39
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.39
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.39
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.38
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.38
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.38
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.38
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.37
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.37
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.36
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.36
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.36
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.35
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.33
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.33
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.33
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.31
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.31
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.31
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.29
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.29
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.29
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.28
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.27
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.27
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.27
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.25
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.25
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.25
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.25
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.24
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.24
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.22
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.21
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.21
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.21
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.21
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.3
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.19
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.19
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.19
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.18
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.18
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.18
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.17
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.17
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.14
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.14
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.14
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.14
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.13
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.12
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.12
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.12
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.1
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.1
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.09
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.09
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.08
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.08
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.07
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.06
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.06
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.06
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.06
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.05
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.04
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.03
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.02
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.02
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.01
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.92
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.92
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.89
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.89
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.88
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.87
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	96.87
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.86
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.82
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.81
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.81
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.79
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	96.77
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	96.75
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	96.75
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.74
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	96.72
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.72
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.69
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.68
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.67
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.65
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.64
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.6
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.56
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.56
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.54
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.52
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.52
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.42
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.41
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.39
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.31
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	96.26
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.23
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.21
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.2
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.19
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.15
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.14
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	96.11
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.1
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.06
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.91
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.7
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.63
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.58
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.58
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.45
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.96
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	94.61
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	94.59
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	93.98
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.96
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.7
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.4
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	93.38
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	93.26
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	92.93
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	92.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	92.47
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.09
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	91.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	91.55
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	91.41
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	91.37
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	90.97
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	90.54
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	90.34
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	89.41
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	88.75
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	87.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	87.5
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	86.37
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	84.22
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	82.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	82.76
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	81.87
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	80.97

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.64  E-value=2.6e-16  Score=119.72  Aligned_cols=84  Identities=40%  Similarity=0.740  Sum_probs=74.1

Q ss_pred             eeccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCC-CceEEEeeeccCCCCCCCCCCCCCCCccccCc
Q psy15201          9 SAVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQAGFRDS-DIEYVPCSGLTGENLTTPSQVPALTSWYSGPC   85 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~~~~~~-~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~t   85 (97)
                      ++.+|++++|+++||||++  +|++++++++.+++..+++..++.+. +.+++|+||++|.|+.++...   ++||+|++
T Consensus       150 ~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~---~~w~~g~~  226 (439)
T 3j2k_7          150 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF---CPWYIGLP  226 (439)
T ss_pred             HHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc---ccccCchH
Confidence            4568999999999999984  57889999999999999999888643 689999999999999998776   99999999


Q ss_pred             hHHHhccccC
Q psy15201         86 LLDVIGLSGL   95 (97)
Q Consensus        86 lle~ld~~~~   95 (97)
                      |+++|+.++.
T Consensus       227 L~~~l~~i~~  236 (439)
T 3j2k_7          227 FIPYLDNLPN  236 (439)
T ss_pred             HHHHHHhCCC
Confidence            9999998763

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.4e-15  Score=118.78  Aligned_cols=85  Identities=35%  Similarity=0.720  Sum_probs=75.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ++.+|++++|+|+||+|++++++.+++++++++..+++..++.+...+++|+||++|.|+.+.+.....++||+|++|++
T Consensus       300 ~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~  379 (611)
T 3izq_1          300 ASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMS  379 (611)
T ss_dssp             HHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHH
T ss_pred             HHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHH
Confidence            45579999999999999998889999999999999999988866678999999999999998865433489999999999


Q ss_pred             Hhccc
Q psy15201         89 VIGLS   93 (97)
Q Consensus        89 ~ld~~   93 (97)
                      +|+.+
T Consensus       380 ~L~~l  384 (611)
T 3izq_1          380 TLENA  384 (611)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            99988

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.59  E-value=5e-16  Score=119.10  Aligned_cols=85  Identities=35%  Similarity=0.720  Sum_probs=74.1

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ++.+|++++|+++||||++++++.+++++++++..+++..++.+...+++|+||++|+|+.+++.....++||+|++|++
T Consensus       166 ~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~  245 (483)
T 3p26_A          166 ASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMS  245 (483)
T ss_dssp             HHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHH
T ss_pred             HHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHH
Confidence            45589999999999999998889999999999999999988866678999999999999998865311268999999999


Q ss_pred             Hhccc
Q psy15201         89 VIGLS   93 (97)
Q Consensus        89 ~ld~~   93 (97)
                      +|+.+
T Consensus       246 ~L~~i  250 (483)
T 3p26_A          246 TLENA  250 (483)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99887

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.56  E-value=8.5e-15  Score=110.87  Aligned_cols=84  Identities=25%  Similarity=0.581  Sum_probs=72.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      ++.+|++++|+++||+|++++++++++++.++++.+++..++.....+++|+||++|.|+.+....   ++||+|++|++
T Consensus       152 ~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~---~~w~~g~~L~~  228 (434)
T 1zun_B          152 ASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER---SPWYAGQSLME  228 (434)
T ss_dssp             HHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT---CTTCCSCCTTH
T ss_pred             HHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc---CccccCchHHH
Confidence            346789999999999999987788899999999999987774334689999999999999998876   89999999999


Q ss_pred             HhccccC
Q psy15201         89 VIGLSGL   95 (97)
Q Consensus        89 ~ld~~~~   95 (97)
                      +|+.++.
T Consensus       229 ~l~~i~~  235 (434)
T 1zun_B          229 ILETVEI  235 (434)
T ss_dssp             HHHHSCC
T ss_pred             HHhcCCC
Confidence            9998764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.56  E-value=9.1e-15  Score=110.85  Aligned_cols=83  Identities=30%  Similarity=0.663  Sum_probs=73.7

Q ss_pred             eeccCCCeEEEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCch
Q psy15201          9 SAVSGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL   86 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tl   86 (97)
                      ++.+|++++|+++||||+++  |++++++++.++++.+++..++.+...+++|+||++|+|+.+....   ++||+|++|
T Consensus       139 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~---~~~~~g~~L  215 (435)
T 1jny_A          139 AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTL  215 (435)
T ss_dssp             HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCSCCH
T ss_pred             HHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc---cccccchhH
Confidence            34579999999999999987  7789999999999999998888656689999999999999988765   899999999


Q ss_pred             HHHhcccc
Q psy15201         87 LDVIGLSG   94 (97)
Q Consensus        87 le~ld~~~   94 (97)
                      +++|+.++
T Consensus       216 l~~l~~~~  223 (435)
T 1jny_A          216 EEYLDQLE  223 (435)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHhccC
Confidence            99998864

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.56  E-value=6.2e-15  Score=112.66  Aligned_cols=83  Identities=37%  Similarity=0.741  Sum_probs=73.0

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc------
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS------   82 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~------   82 (97)
                      ++.+|++++|+++||||+++|++++++++.++++.+++..++.+++.+++|+||++|+|+.+.+..   ++||+      
T Consensus       140 ~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~---~~~~~~~~~~~  216 (458)
T 1f60_A          140 AFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN---APWYKGWEKET  216 (458)
T ss_dssp             HHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS---CTTCCCEEEEC
T ss_pred             HHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc---Cchhhcccccc
Confidence            456899899999999999987889999999999999998888555689999999999999988765   89997      


Q ss_pred             ------cCchHHHhcccc
Q psy15201         83 ------GPCLLDVIGLSG   94 (97)
Q Consensus        83 ------g~tlle~ld~~~   94 (97)
                            |++|+++|+.++
T Consensus       217 ~tg~~~~~~Ll~~l~~~~  234 (458)
T 1f60_A          217 KAGVVKGKTLLEAIDAIE  234 (458)
T ss_dssp             SSSEEEESSHHHHHHTSC
T ss_pred             cccccchHHHHHHhhccC
Confidence                  679999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.56  E-value=3.9e-15  Score=117.18  Aligned_cols=84  Identities=40%  Similarity=0.762  Sum_probs=73.8

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH-HHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL-KQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll   87 (97)
                      ++.+|++++|+|+||||++++++++++++.+++..++ +..++.+..++++|+||++|.|+.+++.. ..++||+|++|+
T Consensus       310 ~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~-~~~~w~~g~~Ll  388 (592)
T 3mca_A          310 LRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS-DLYKWYKGPTLL  388 (592)
T ss_dssp             HHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC-GGGGTCCSCCHH
T ss_pred             HHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccc-ccccccchHHHH
Confidence            4568998999999999999888999999999999998 87888666789999999999999988753 348999999999


Q ss_pred             HHhccc
Q psy15201         88 DVIGLS   93 (97)
Q Consensus        88 e~ld~~   93 (97)
                      ++|+.+
T Consensus       389 e~l~~~  394 (592)
T 3mca_A          389 SALDQL  394 (592)
T ss_dssp             HHHHTS
T ss_pred             HHHHhh
Confidence            999775

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.55  E-value=7.9e-15  Score=112.31  Aligned_cols=86  Identities=37%  Similarity=0.784  Sum_probs=72.4

Q ss_pred             eeccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHh-CCC-CCCceEEEeeeccCCCCCCCCCCCCCCCccccC
Q psy15201          9 SAVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQA-GFR-DSDIEYVPCSGLTGENLTTPSQVPALTSWYSGP   84 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~-~~~-~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~   84 (97)
                      ++.+|++++|+++||||+.  +|++++++++.+++..+++.. ++. ....+++|+||++|.|+.+.... ..++||+|+
T Consensus       176 ~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~-~~~~w~~g~  254 (467)
T 1r5b_A          176 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS-SVCPWYQGP  254 (467)
T ss_dssp             HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT-TTCSSCCSC
T ss_pred             HHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccccc-ccCccccch
Confidence            4568998899999999994  578899999999999999887 774 12579999999999999887642 348999999


Q ss_pred             chHHHhccccC
Q psy15201         85 CLLDVIGLSGL   95 (97)
Q Consensus        85 tlle~ld~~~~   95 (97)
                      +|+++|+.++.
T Consensus       255 ~L~~~l~~i~~  265 (467)
T 1r5b_A          255 SLLEYLDSMTH  265 (467)
T ss_dssp             CHHHHHHHCCC
T ss_pred             hHHHHHHhCCC
Confidence            99999998764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.04  E-value=1.3e-10  Score=86.95  Aligned_cols=76  Identities=18%  Similarity=0.255  Sum_probs=62.6

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc--Cch
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG--PCL   86 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g--~tl   86 (97)
                      ++.+|++++|+++||+|+++ ++++++.+.++++.+++..++.++..+++|+||++|.|.    .+   ++|+.|  ..|
T Consensus       114 ~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~----~~---~~~~~g~i~~L  185 (397)
T 1d2e_A          114 ARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ----RD---PELGLKSVQKL  185 (397)
T ss_dssp             HHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT----CC---TTTTHHHHHHH
T ss_pred             HHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccc----cC---CCccCCcHHHH
Confidence            44578988999999999986 577888888899999998888656789999999999984    22   689987  678


Q ss_pred             HHHhcc
Q psy15201         87 LDVIGL   92 (97)
Q Consensus        87 le~ld~   92 (97)
                      +++|+.
T Consensus       186 l~~l~~  191 (397)
T 1d2e_A          186 LDAVDT  191 (397)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.95  E-value=1.1e-10  Score=87.36  Aligned_cols=83  Identities=20%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCC--CCCCCcccc-Cc
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYSG-PC   85 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~--~~~~~W~~g-~t   85 (97)
                      ++.+|++++|+++||+|+++ ++++++++.++++.+++..++.+...+++|+||++|.|+.+.+.+  ...++||.+ .+
T Consensus       123 ~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~  201 (405)
T 2c78_A          123 ARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWE  201 (405)
T ss_dssp             HHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHH
T ss_pred             HHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHH
Confidence            45578888999999999986 577788888899999988887655689999999999986543321  122789876 67


Q ss_pred             hHHHhcc
Q psy15201         86 LLDVIGL   92 (97)
Q Consensus        86 lle~ld~   92 (97)
                      |+++|+.
T Consensus       202 Ll~~l~~  208 (405)
T 2c78_A          202 LLDAIDE  208 (405)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8888765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.71  E-value=9.8e-09  Score=86.55  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=61.3

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCcccc-CchH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSG-PCLL   87 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g-~tll   87 (97)
                      ++.+|++++|+++||||+++ ++++++++.++++.+++..++.++..+++|+||++|.|-     .   ++||.| ..|+
T Consensus       407 l~~lgIP~IIVVINKiDLv~-d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng-----~---~~w~eGI~eLl  477 (1289)
T 3avx_A          407 GRQVGVPYIIVFLNKCDMVD-DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG-----D---AEWEAKILELA  477 (1289)
T ss_dssp             HHHHTCSCEEEEEECCTTCC-CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC-----C---HHHHHHHHHHH
T ss_pred             HHHcCCCeEEEEEeeccccc-chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC-----C---ccccccchhhH
Confidence            45579988999999999986 677888888999999998888656789999999999651     2   579877 6777


Q ss_pred             HHhcc
Q psy15201         88 DVIGL   92 (97)
Q Consensus        88 e~ld~   92 (97)
                      ++|+.
T Consensus       478 eaL~~  482 (1289)
T 3avx_A          478 GFLDS  482 (1289)
T ss_dssp             HHHHH
T ss_pred             hHHhh
Confidence            77754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.52  E-value=6.4e-08  Score=72.38  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=44.3

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++.+|++++|+++||+|+++  .+...+..+++..+++..+.  ...+++|+||++|+|+.+
T Consensus       124 ~~~~~~~~iivviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~  181 (403)
T 3sjy_A          124 LGIIGVKNLIIVQNKVDVVS--KEEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDS  181 (403)
T ss_dssp             HHHHTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH
T ss_pred             HHHcCCCCEEEEEECccccc--hHHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHH
Confidence            34578999999999999985  45555666677776654433  468999999999999854

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.42  E-value=1.2e-07  Score=72.79  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh-CCCCCCceEEEeeeccCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA-GFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++.+|++. |+++||+|+++  +++++++.++++.+++.. ++.  ..+++|+||++|+|+.+
T Consensus       121 ~~~~~ip~-IvviNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~  178 (482)
T 1wb1_A          121 LDHFNIPI-IVVITKSDNAG--TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDE  178 (482)
T ss_dssp             HHHTTCCB-CEEEECTTSSC--HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHH
T ss_pred             HHHcCCCE-EEEEECCCccc--chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHH
Confidence            45678877 99999999984  778888889999988876 552  57999999999999854

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.38  E-value=2.3e-07  Score=69.45  Aligned_cols=57  Identities=19%  Similarity=0.380  Sum_probs=42.2

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.+|++++|+++||+|+++  .++..+..+++..+++...  ....+++|+||++|.|+.+
T Consensus       133 ~~~~~~~iivviNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi~~  189 (410)
T 1kk1_A          133 QIIGQKNIIIAQNKIELVD--KEKALENYRQIKEFIEGTV--AENAPIIPISALHGANIDV  189 (410)
T ss_dssp             HHHTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTST--TTTCCEEECBTTTTBSHHH
T ss_pred             HHcCCCcEEEEEECccCCC--HHHHHHHHHHHHHHHHhcC--cCCCeEEEeeCCCCCCHHH
Confidence            4578999999999999985  3444455566666665432  2357999999999999853

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.30  E-value=1.7e-07  Score=70.18  Aligned_cols=57  Identities=21%  Similarity=0.335  Sum_probs=33.9

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.+|++++|+++||+|+++.+  +..+..++++.+++...  ....+++|+||++|+|+.+
T Consensus       131 ~~l~~~~iivv~NK~Dl~~~~--~~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi~~  187 (408)
T 1s0u_A          131 EILGIDKIIIVQNKIDLVDEK--QAEENYEQIKEFVKGTI--AENAPIIPISAHHEANIDV  187 (408)
T ss_dssp             HHTTCCCEEEEEECTTSSCTT--TTTTHHHHHHHHHTTST--TTTCCEEEC------CHHH
T ss_pred             HHcCCCeEEEEEEccCCCCHH--HHHHHHHHHHHHHhhcC--CCCCeEEEeeCCCCCCHHH
Confidence            458999999999999998632  22223344555554332  2457999999999999854

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.23  E-value=6.6e-07  Score=67.83  Aligned_cols=53  Identities=19%  Similarity=0.275  Sum_probs=41.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+|+||+|+++..+...+++.+.++..+...++    .+++++||++|.|+.+.
T Consensus       307 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~l  359 (456)
T 4dcu_A          307 KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTL  359 (456)
T ss_dssp             CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGH
T ss_pred             CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC----CCEEEEcCCCCcCHHHH
Confidence            579999999999875555667777777766654443    79999999999999764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.16  E-value=1.2e-06  Score=65.34  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=44.1

Q ss_pred             eeccCCCeEEEEEE-cCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEE--eeecc---CCCCCC
Q psy15201          9 SAVSGVNQLGVVIN-KLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVP--CSGLT---GENLTT   70 (97)
Q Consensus         9 ~~~lGvk~~Iv~IN-K~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iip--iSA~~---G~ni~~   70 (97)
                      ++.+|++.+|+++| |||+ +  .+.++++.++++.+++..++  ...+++|  +||++   |.|+.+
T Consensus       107 ~~~~~i~~~ivvvNNK~Dl-~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~  169 (370)
T 2elf_A          107 LDLLGFKHGIIALTRSDST-H--MHAIDELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDE  169 (370)
T ss_dssp             HHHTTCCEEEEEECCGGGS-C--HHHHHHHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHH
T ss_pred             HHHcCCCeEEEEEEeccCC-C--HHHHHHHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHH
Confidence            35679988899999 9999 4  55667777888888765544  4589999  99999   777643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.08  E-value=2.4e-06  Score=64.45  Aligned_cols=53  Identities=19%  Similarity=0.225  Sum_probs=39.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+|+||+|+++.++...+++.+++...+....    ..+++++||++|.|+.+.
T Consensus       287 ~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l  339 (436)
T 2hjg_A          287 KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTL  339 (436)
T ss_dssp             CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGH
T ss_pred             CcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHH
Confidence            57999999999986444445556666655554333    379999999999999775

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.05  E-value=2.4e-06  Score=55.95  Aligned_cols=50  Identities=20%  Similarity=0.391  Sum_probs=36.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|+++||+|+.+  ++......++++.+++..+    ..+++++||.+|.|+.+
T Consensus       134 ~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~  183 (195)
T 3pqc_A          134 IPFTIVLTKMDKVK--MSERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISE  183 (195)
T ss_dssp             CCEEEEEECGGGSC--GGGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEChhcCC--hHHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHH
Confidence            47899999999985  3344455566666665433    36999999999999865

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.01  E-value=6.7e-06  Score=55.38  Aligned_cols=54  Identities=13%  Similarity=0.197  Sum_probs=35.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh---CCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA---GFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+  .....+..+++...+...   +. ....+++++||++|.|+.+.
T Consensus       145 ~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~l  201 (223)
T 4dhe_A          145 KPIHSLLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDDA  201 (223)
T ss_dssp             CCEEEEEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHHH
T ss_pred             CCEEEEEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHHH
Confidence            46899999999985  444444444444444332   11 12479999999999998653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.74  E-value=1.4e-05  Score=52.46  Aligned_cols=50  Identities=16%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+  +....+..+++...+.   . ....+++++||.+|.|+.+
T Consensus       135 ~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~---~-~~~~~~~~~Sa~~~~gv~~  184 (195)
T 1svi_A          135 IPVIVIATKADKIP--KGKWDKHAKVVRQTLN---I-DPEDELILFSSETKKGKDE  184 (195)
T ss_dssp             CCEEEEEECGGGSC--GGGHHHHHHHHHHHHT---C-CTTSEEEECCTTTCTTHHH
T ss_pred             CCEEEEEECcccCC--hHHHHHHHHHHHHHHc---c-cCCCceEEEEccCCCCHHH
Confidence            47899999999985  2223333444444332   1 1247999999999999865

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.73  E-value=2.9e-05  Score=57.11  Aligned_cols=54  Identities=20%  Similarity=0.163  Sum_probs=38.0

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~   71 (97)
                      +.|+++||+|+.+  ....+...+++...+........  ..+++++||++|.|+.+.
T Consensus       219 p~ivVlNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L  274 (355)
T 3p32_A          219 ADIVVVNKADGEH--HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAEL  274 (355)
T ss_dssp             CSEEEEECCCGGG--HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHH
T ss_pred             CCEEEEECCCCcC--hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHH
Confidence            6899999999873  44555566666666554432111  368999999999999654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.67  E-value=3e-05  Score=52.03  Aligned_cols=52  Identities=29%  Similarity=0.403  Sum_probs=34.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|+++||+|+.+ .....+.+.         ++...+.+..++    .+++++||++|.|+.+
T Consensus       134 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~  194 (204)
T 4gzl_A          134 NTPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT  194 (204)
T ss_dssp             SCCEEEEEECHHHHT-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred             CCCEEEEEechhhcc-chhhhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHH
Confidence            357999999999876 233222221         233445555554    5899999999999865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.67  E-value=3.1e-05  Score=50.13  Aligned_cols=53  Identities=28%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+ .....+.+.         ++...+.+..++    .+++++||.+|.|+.+.
T Consensus       109 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l  170 (186)
T 1mh1_A          109 NTPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTV  170 (186)
T ss_dssp             TSCEEEEEECHHHHT-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHH
T ss_pred             CCCEEEEeEcccccc-cchhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHHH
Confidence            457999999999875 233222221         233344444443    58999999999998653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.63  E-value=1.7e-05  Score=59.78  Aligned_cols=53  Identities=23%  Similarity=0.154  Sum_probs=35.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.+.++...+++.+++...+....    ..+++++||++|.|+.+.
T Consensus       293 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l  345 (439)
T 1mky_A          293 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDRM  345 (439)
T ss_dssp             CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHHH
T ss_pred             CCEEEEEECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHHH
Confidence            57999999999985322223444444443333222    378999999999998654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.63  E-value=8.5e-05  Score=49.47  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=34.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+ .....+.+         .++...+.+..++    .+++++||.+|.|+.+
T Consensus       129 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~  189 (201)
T 2gco_A          129 NVPIILVGNKKDLRQ-DEHTRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVRE  189 (201)
T ss_dssp             TCCEEEEEECGGGTT-CHHHHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred             CCCEEEEEecHHhhc-CccchhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHH
Confidence            357999999999986 33322222         1234445555443    4899999999999865

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.61  E-value=0.00011  Score=48.33  Aligned_cols=52  Identities=23%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|+++||+|+.+ .....+.+         .++...+.+..++    .+++++||++|.|+.+
T Consensus       122 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~  182 (194)
T 2atx_A          122 NVPFLLIGTQIDLRD-DPKTLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKT  182 (194)
T ss_dssp             TCCEEEEEECTTSTT-CHHHHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHH
T ss_pred             CCCEEEEEEChhhcc-cccchhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHH
Confidence            357999999999986 22211111         2344455555554    4899999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.59  E-value=4e-05  Score=56.96  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=39.8

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++-+++|+++||+|+.+. +...+++.+.++.+.+..++.  ..+++++||.+|.|+.+.
T Consensus        94 ~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~--~~~v~~iSA~~g~gi~~L  150 (368)
T 3h2y_A           94 VGNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLK--PEDVFLISAAKGQGIAEL  150 (368)
T ss_dssp             SSSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCC--CSEEEECCTTTCTTHHHH
T ss_pred             hCCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCC--cccEEEEeCCCCcCHHHH
Confidence            456789999999999862 222334445555666666652  247999999999998653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.58  E-value=4.8e-05  Score=56.49  Aligned_cols=58  Identities=14%  Similarity=0.216  Sum_probs=40.3

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++-+++|+++||+|+.+. +...+++++.+..+++..++.  ..+++++||.+|.|+.+.
T Consensus        95 ~l~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~--~~~v~~iSA~~g~gi~~L  152 (369)
T 3ec1_A           95 FAADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLC--PVDVCLVSAAKGIGMAKV  152 (369)
T ss_dssp             HCTTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCC--CSEEEECBTTTTBTHHHH
T ss_pred             HhCCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCC--cccEEEEECCCCCCHHHH
Confidence            3567889999999999862 222234445556666666652  247899999999998643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.57  E-value=2.5e-05  Score=53.23  Aligned_cols=54  Identities=17%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+. .....+..+.++.+.+..+   ...+++++||.+|.|+.+.
T Consensus       142 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l  195 (228)
T 2qu8_A          142 NKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQA  195 (228)
T ss_dssp             CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHHH
T ss_pred             CCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHHH
Confidence            4579999999999751 1111222234444544433   1269999999999998654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.54  E-value=7.2e-05  Score=47.75  Aligned_cols=52  Identities=21%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+...  .+++.+    .+..........+++++||.+|.|+.+.
T Consensus       108 ~~piilv~nK~Dl~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A          108 KAILVVFANKQDMEQAMT--SSEMAN----SLGLPALKDRKWQIFKTSATKGTGLDEA  159 (171)
T ss_dssp             TCEEEEEEECTTSTTCCC--HHHHHH----HHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             CCEEEEEEECCCCcCCCC--HHHHHH----HhCchhccCCceEEEECcCCCCcCHHHH
Confidence            458999999999985211  122222    2211112223469999999999998653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.54  E-value=5.7e-05  Score=48.94  Aligned_cols=52  Identities=23%  Similarity=0.220  Sum_probs=32.6

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .-.++|+++||+|+.+..  ..    +++...+..........+++++||.+|.|+.+
T Consensus       118 ~~~piilv~nK~Dl~~~~--~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  169 (183)
T 1moz_A          118 QDAALLVFANKQDQPGAL--SA----SEVSKELNLVELKDRSWSIVASSAIKGEGITE  169 (183)
T ss_dssp             SSCEEEEEEECTTSTTCC--CH----HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred             CCCeEEEEEECCCCCCCC--CH----HHHHHHhCcccccCCceEEEEccCCCCcCHHH
Confidence            345799999999987521  11    22222222222222346899999999999865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.51  E-value=9.4e-06  Score=52.43  Aligned_cols=50  Identities=26%  Similarity=0.210  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC-C---CCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF-R---DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~-~---~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+.+.++.       ...++.... .   ....+++++||.+|.|+.+.
T Consensus       108 ~p~ilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  161 (178)
T 2lkc_A          108 VPIIVAINKMDKPEANPDRV-------MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHL  161 (178)
T ss_dssp             CCEEEEEETTTSSCSCHHHH-------HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHH
T ss_pred             CCEEEEEECccCCcCCHHHH-------HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHH
Confidence            36899999999986332221       222222221 1   01269999999999998653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.49  E-value=3.8e-05  Score=50.09  Aligned_cols=49  Identities=14%  Similarity=0.102  Sum_probs=33.4

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-.++|++.||+|+.+.      ...++++.+++..++    .+++++||.+|.|+.+.
T Consensus       134 ~~~piilv~NK~Dl~~~------~~~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~l  182 (198)
T 3t1o_A          134 DDVPIVIQVNKRDLPDA------LPVEMVRAVVDPEGK----FPVLEAVATEGKGVFET  182 (198)
T ss_dssp             TSSCEEEEEECTTSTTC------CCHHHHHHHHCTTCC----SCEEECBGGGTBTHHHH
T ss_pred             CCCCEEEEEEchhcccc------cCHHHHHHHHHhcCC----ceEEEEecCCCcCHHHH
Confidence            34579999999998752      112344455543332    38999999999998653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.48  E-value=0.00013  Score=49.15  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=35.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+ .....+.+         .++...+.+..++    .+++++||.+|.|+.+.
T Consensus       138 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el  199 (214)
T 2j1l_A          138 KVPIIVVGCKTDLRK-DKSLVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHAV  199 (214)
T ss_dssp             SCCEEEEEECGGGGS-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEEChhhhc-cchhhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHHH
Confidence            357999999999985 23222221         1234455555443    58999999999998653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.48  E-value=5.5e-05  Score=48.89  Aligned_cols=52  Identities=23%  Similarity=0.192  Sum_probs=33.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHH-------HHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQ-------EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~-------~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|+++||+|+.+. .....       ...++.+.+.+..++    .+++++||++|.|+.+
T Consensus       112 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~  170 (182)
T 3bwd_D          112 GVPIVLVGTKLDLRDD-KQFFIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKG  170 (182)
T ss_dssp             TCCEEEEEECHHHHTC-HHHHHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHH
T ss_pred             CCCEEEEEechhhhcC-cccccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHH
Confidence            3579999999998752 21100       012334445555553    5899999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.46  E-value=0.00014  Score=48.56  Aligned_cols=53  Identities=23%  Similarity=0.206  Sum_probs=33.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+ .....+++.         ++...+.+..+.    .+++++||.+|.|+.+.
T Consensus       129 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el  190 (207)
T 2fv8_A          129 NVPIILVANKKDLRS-DEHVRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVREV  190 (207)
T ss_dssp             TCCEEEEEECGGGGG-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEEchhhhc-cccchhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHHH
Confidence            357999999999975 222222211         122334444332    48999999999998653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.46  E-value=5.1e-05  Score=48.66  Aligned_cols=49  Identities=14%  Similarity=0.019  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+-..    ++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       111 ~~piilv~NK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l  159 (175)
T 2nzj_A          111 HVPIILVGNKADLARCREVSV----EEGRACAVVFD-----CKFIETSATLQHNVAEL  159 (175)
T ss_dssp             -CCEEEEEECTTCTTTCCSCH----HHHHHHHHHHT-----SEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEEChhhccccccCH----HHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Confidence            357999999999975211111    12233333334     58999999999998653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.45  E-value=9.4e-05  Score=48.45  Aligned_cols=53  Identities=26%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-.++|+++||+|+.+..  ..+    ++...+....+.....+++++||.+|.|+.+.
T Consensus       116 ~~~piilv~NK~Dl~~~~--~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (187)
T 1zj6_A          116 RKAGLLIFANKQDVKECM--TVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQG  168 (187)
T ss_dssp             TTCEEEEEEECTTSTTCC--CHH----HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             CCCeEEEEEECCCCcCCC--CHH----HHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence            346899999999997521  112    22222322112223479999999999998653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.45  E-value=0.00014  Score=52.46  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+.|+++||+|+++  +...+. .++...+++..+     .+++++||.+|.|+.+.
T Consensus       111 ~~~ilV~NK~DL~~--~~~v~~-~~~~~~~~~~~g-----~~~~~~SA~~g~gi~~L  159 (302)
T 2yv5_A          111 VEPVIVFNKIDLLN--EEEKKE-LERWISIYRDAG-----YDVLKVSAKTGEGIDEL  159 (302)
T ss_dssp             CEEEEEECCGGGCC--HHHHHH-HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             CCEEEEEEcccCCC--ccccHH-HHHHHHHHHHCC-----CeEEEEECCCCCCHHHH
Confidence            46799999999985  321111 233444555555     48999999999999664

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.45  E-value=3.1e-05  Score=49.01  Aligned_cols=48  Identities=25%  Similarity=0.113  Sum_probs=32.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       109 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A          109 NVPFLLVGNKSDLEDKRQVS----VEEAKNRADQWN-----VNYVETSAKTRANVDK  156 (168)
T ss_dssp             TSCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred             CCcEEEEEECccccccCccC----HHHHHHHHHHcC-----CeEEEeCCCCCCCHHH
Confidence            35799999999987421111    123344444444     4899999999999865

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.44  E-value=0.00013  Score=57.50  Aligned_cols=62  Identities=26%  Similarity=0.462  Sum_probs=38.7

Q ss_pred             eeccCCCeEEEEEEcCCCCC-CC---------------H---HHHHHHHHHHHHHHHHhCCC----------CCCceEEE
Q psy15201          9 SAVSGVNQLGVVINKLDTVS-WS---------------Q---DRFQEIVTKLGAFLKQAGFR----------DSDIEYVP   59 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~-~~---------------~---~~~~~i~~~l~~~l~~~~~~----------~~~~~iip   59 (97)
                      ++..++ ++|+++||+|+.+ |.               +   +.+.+...++...+...++.          ...++++|
T Consensus       118 l~~~~v-PiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~  196 (594)
T 1g7s_A          118 LRMYRT-PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIP  196 (594)
T ss_dssp             HHHTTC-CEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEE
T ss_pred             HHHcCC-eEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEE
Confidence            344566 5899999999874 32               1   22333333444444443432          23469999


Q ss_pred             eeeccCCCCCCC
Q psy15201         60 CSGLTGENLTTP   71 (97)
Q Consensus        60 iSA~~G~ni~~~   71 (97)
                      +||++|.|+.+.
T Consensus       197 vSA~tG~GI~eL  208 (594)
T 1g7s_A          197 ISAITGEGIPEL  208 (594)
T ss_dssp             CCTTTCTTHHHH
T ss_pred             EeccCCCCchhH
Confidence            999999998654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.43  E-value=4.8e-05  Score=48.48  Aligned_cols=47  Identities=19%  Similarity=0.074  Sum_probs=31.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       107 ~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A          107 VPIILVGNKSDLVRSREVS----VDEGRACAVVFD-----CKFIETSAALHHNVQA  153 (166)
T ss_dssp             CCEEEEEECTTCCSSCCSC----HHHHHHHHHHTT-----CEEEECBGGGTBSHHH
T ss_pred             CCEEEEEeccccccccccC----HHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Confidence            5789999999987521111    122233333333     5999999999999865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.42  E-value=0.0001  Score=48.39  Aligned_cols=52  Identities=17%  Similarity=0.153  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+.  ...+    ++...++...+.....+++++||.+|.|+.+.
T Consensus       126 ~~piilv~nK~Dl~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  177 (190)
T 2h57_A          126 RIPILFFANKMDLRDA--VTSV----KVSQLLCLENIKDKPWHICASDAIKGEGLQEG  177 (190)
T ss_dssp             CCCEEEEEECTTSTTC--CCHH----HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             CCeEEEEEeCcCcccC--CCHH----HHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence            3579999999999752  1112    22333321122223579999999999998653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.42  E-value=2.6e-05  Score=51.47  Aligned_cols=52  Identities=15%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+....  ....++.+.+.+..++    .+++++||.+|.|+.+.
T Consensus       127 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l  178 (194)
T 3reg_A          127 TAKTVLVGLKVDLRKDGSD--DVTKQEGDDLCQKLGC----VAYIEASSVAKIGLNEV  178 (194)
T ss_dssp             TSEEEEEEECGGGCCTTTT--CCCHHHHHHHHHHHTC----SCEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEEChhhccCCCC--cccHHHHHHHHHhcCC----CEEEEeecCCCCCHHHH
Confidence            4689999999998742111  1112344555555565    34999999999998653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.40  E-value=9.4e-05  Score=48.55  Aligned_cols=52  Identities=25%  Similarity=0.287  Sum_probs=32.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.+++++.||+|+.+...  .++    +...+..........+++++||.+|.|+.+.
T Consensus       117 ~~piilv~NK~Dl~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (181)
T 1fzq_A          117 CVPVLIFANKQDLLTAAP--ASE----IAEGLNLHTIRDRVWQIQSCSALTGEGVQDG  168 (181)
T ss_dssp             TCCEEEEEECTTSTTCCC--HHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEECcCcccCCC--HHH----HHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence            457999999999975211  122    2222211112223478999999999998653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.40  E-value=0.00014  Score=47.29  Aligned_cols=50  Identities=22%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+. .      .+..+.+.+..+.+..  ..+++++||++|.|+.+.
T Consensus       123 ~piilv~nK~Dl~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  174 (190)
T 2cxx_A          123 IPTIVAVNKLDKIKN-V------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL  174 (190)
T ss_dssp             CCEEEEEECGGGCSC-H------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred             CceEEEeehHhccCc-H------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHH
Confidence            468999999999862 2      1223334444454100  247899999999998653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.40  E-value=0.00011  Score=48.23  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+.  ...+++.+.+....  . ......+++++||++|.|+.+.
T Consensus       127 ~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~Sa~~g~gv~~l  179 (199)
T 4bas_A          127 RVPFLFFANKMDAAGA--KTAAELVEILDLTT--L-MGDHPFVIFASNGLKGTGVHEG  179 (199)
T ss_dssp             BCCEEEEEECTTSTTC--CCHHHHHHHHTHHH--H-HTTSCEEEEECBTTTTBTHHHH
T ss_pred             CCCEEEEEECcCCCCC--CCHHHHHHHhcchh--h-ccCCeeEEEEeeCCCccCHHHH
Confidence            4579999999999852  11222222222110  0 0113479999999999998653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.39  E-value=0.00011  Score=48.17  Aligned_cols=52  Identities=23%  Similarity=0.167  Sum_probs=32.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+...  .+++    ...+..........+++++||.+|.|+.+.
T Consensus       123 ~~piilv~nK~Dl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (189)
T 2x77_A          123 KSLLLIFANKQDLPDAAS--EAEI----AEQLGVSSIMNRTWTIVKSSSKTGDGLVEG  174 (189)
T ss_dssp             TCEEEEEEECTTSTTCCC--HHHH----HHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             CCeEEEEEECCCCcCCCC--HHHH----HHHhChhhccCCceEEEEccCCCccCHHHH
Confidence            457999999999975211  1222    222211112223469999999999998653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.39  E-value=0.00011  Score=47.91  Aligned_cols=52  Identities=23%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..  ..++    +...+..........+++++||.+|.|+.+.
T Consensus       119 ~~piilv~nK~Dl~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (186)
T 1ksh_A          119 GATLLIFANKQDLPGAL--SCNA----IQEALELDSIRSHHWRIQGCSAVTGEDLLPG  170 (186)
T ss_dssp             TCEEEEEEECTTSTTCC--CHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             CCcEEEEEeCccCCCCC--CHHH----HHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence            36899999999997521  1122    2222211112223579999999999998653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.39  E-value=0.0001  Score=48.16  Aligned_cols=52  Identities=27%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .-.++|+++||+|+.+..  ..+    ++...+..........+++++||.+|.|+.+
T Consensus       121 ~~~piilv~NK~Dl~~~~--~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  172 (181)
T 2h17_A          121 RKAGLLIFANKQDVKECM--TVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQ  172 (181)
T ss_dssp             TTCEEEEEEECTTSTTCC--CHH----HHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             CCCeEEEEEECCCcccCC--CHH----HHHHHhCcccccCCceEEEEccCCCCcCHHH
Confidence            346799999999997521  111    2222221111222346999999999999854

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.38  E-value=4e-05  Score=48.69  Aligned_cols=49  Identities=14%  Similarity=-0.012  Sum_probs=32.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+..+..    .++.+.+.+..+    ..+++++||.+|.|+.+
T Consensus       108 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A          108 DVPMILVGNKCDLEDERVVG----KEQGQNLARQWC----NCAFLESSAKSKINVNE  156 (167)
T ss_dssp             CCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT----SCEEEECBTTTTBSHHH
T ss_pred             CCcEEEEEECccccccccCC----HHHHHHHHHHcc----CCcEEEecCCCCCCHHH
Confidence            35789999999987411101    123334444432    36999999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.38  E-value=1.9e-05  Score=50.29  Aligned_cols=51  Identities=22%  Similarity=0.248  Sum_probs=31.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+....+ +...++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       108 ~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  158 (170)
T 1ek0_A          108 DIIIALVGNKIDXLQEGGER-KVAREEGEKLAEEKG-----LLFFETSAKTGENVND  158 (170)
T ss_dssp             TCEEEEEEECGGGGGSSCCC-CSCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred             CCcEEEEEECCCcccccccc-CCCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence            35789999999987421000 001122333444444     5899999999999865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.38  E-value=5.6e-05  Score=49.87  Aligned_cols=49  Identities=24%  Similarity=0.104  Sum_probs=32.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    .+++..+.+..+     .+++++||.+|.|+.+.
T Consensus       119 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A          119 NVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN-----VNYVETSAKTRANVDKV  167 (206)
T ss_dssp             CCCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHH
T ss_pred             CCCEEEEEeccCcccccccc----HHHHHHHHHHhC-----CeEEEEeCCCCCCHHHH
Confidence            35789999999987421111    123344444444     48999999999998653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.38  E-value=7.9e-05  Score=49.93  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+.  ...  ..+....+.+.     ...+++++||++|.|+.+.
T Consensus       118 ~piilv~nK~Dl~~~--~~~--~~~~~~~~~~~-----~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A          118 APIVVCANKIDIKNR--QKI--SKKLVMEVLKG-----KNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             SCEEEEEECTTCC------C--CHHHHHHHTTT-----CCCEEEEEBTTTTBTTTHH
T ss_pred             CCEEEEEECCCCccc--ccc--CHHHHHHHHHH-----cCCcEEEEecCCCCCHHHH
Confidence            579999999999741  111  11222233322     2368999999999998654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.37  E-value=0.00011  Score=47.52  Aligned_cols=47  Identities=19%  Similarity=0.190  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+. +..    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       110 ~p~i~v~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A          110 VPMVLVGNKCDLPSR-TVD----TKQAQDLARSYG-----IPFIETSAKTRQGVDDA  156 (189)
T ss_dssp             CCEEEEEECTTSSSC-SSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred             CcEEEEEECccCccc-ccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            579999999998742 111    122333344444     48999999999998653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.37  E-value=0.00011  Score=46.61  Aligned_cols=51  Identities=22%  Similarity=0.112  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.+++++.||+|+.+..  ..+++    ...+..........+++++||.+|.|+.+
T Consensus       101 ~~piilv~nK~Dl~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  151 (164)
T 1r8s_A          101 DAVLLVFANKQDLPNAM--NAAEI----TDKLGLHSLRHRNWYIQATCATSGDGLYE  151 (164)
T ss_dssp             TCEEEEEEECTTSTTCC--CHHHH----HHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred             CCeEEEEEECcCCcCCC--CHHHH----HHHhCcccccCccEEEEEcccCCCcCHHH
Confidence            45899999999997521  11222    22121111222347899999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.36  E-value=5e-05  Score=48.75  Aligned_cols=47  Identities=21%  Similarity=0.280  Sum_probs=31.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+..+..    .++++.+.+..+     .+++++||.+|.|+.+
T Consensus       121 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  167 (179)
T 1z0f_A          121 TVIILIGNKADLEAQRDVT----YEEAKQFAEENG-----LLFLEASAKTGENVED  167 (179)
T ss_dssp             CEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred             CcEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence            4799999999986411111    133444455444     5899999999999864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.36  E-value=5.3e-05  Score=54.67  Aligned_cols=50  Identities=30%  Similarity=0.411  Sum_probs=32.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+++ +.+...+..++   +.+..+   ...+++|+||.+|.|+.+.
T Consensus       123 ~pvilV~NK~Dl~~-~~~~~~~~~~~---l~~~~~---~~~~i~~vSA~~g~gv~~L  172 (308)
T 3iev_A          123 KPVIVVINKIDKIG-PAKNVLPLIDE---IHKKHP---ELTEIVPISALKGANLDEL  172 (308)
T ss_dssp             CCEEEEEECGGGSS-SGGGGHHHHHH---HHHHCT---TCCCEEECBTTTTBSHHHH
T ss_pred             CCEEEEEECccCCC-CHHHHHHHHHH---HHHhcc---CCCeEEEEeCCCCCCHHHH
Confidence            47999999999983 12222222222   333332   2368999999999998654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.36  E-value=0.00014  Score=48.59  Aligned_cols=14  Identities=29%  Similarity=0.221  Sum_probs=12.4

Q ss_pred             CeEEEEEEcCCCCC
Q psy15201         15 NQLGVVINKLDTVS   28 (97)
Q Consensus        15 k~~Iv~INK~D~v~   28 (97)
                      .++|+++||+|+.+
T Consensus       116 ~piilv~nK~Dl~~  129 (214)
T 2fh5_B          116 PSLLIACNKQDIAM  129 (214)
T ss_dssp             CEEEEEEECTTSTT
T ss_pred             CCEEEEEECCCCCC
Confidence            57999999999985

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.35  E-value=0.00014  Score=45.73  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=31.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+. +..    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       109 ~p~iiv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  154 (166)
T 2ce2_X          109 VPMVLVGNKSDLAAR-TVE----SRQAQDLARSYG-----IPYIETSAKTRQGVED  154 (166)
T ss_dssp             CCEEEEEECTTCSCC-CSC----HHHHHHHHHHHT-----CCEEEECTTTCTTHHH
T ss_pred             CcEEEEEEchhhhhc-ccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence            578999999998751 111    123334444444     4899999999999854

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.33  E-value=8.9e-05  Score=47.84  Aligned_cols=49  Identities=14%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+..+-.    .++++.+.+..+     .+++++||++|.|+.+.
T Consensus       117 ~~p~i~v~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l  165 (181)
T 2efe_B          117 NMVMALAGNKSDLLDARKVT----AEDAQTYAQENG-----LFFMETSAKTATNVKEI  165 (181)
T ss_dssp             TCEEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-----CEEEECCSSSCTTHHHH
T ss_pred             CCcEEEEEECCcccccccCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHH
Confidence            35799999999997521111    123344444444     58999999999998653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.33  E-value=4.1e-05  Score=49.48  Aligned_cols=49  Identities=24%  Similarity=0.104  Sum_probs=32.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    .++++.+.+..+     .+++++||.+|.|+.+.
T Consensus       123 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  171 (187)
T 2a9k_A          123 NVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN-----VNYVETSAKTRANVDKV  171 (187)
T ss_dssp             TCCEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEECccccccCccC----HHHHHHHHHHcC-----CeEEEeCCCCCCCHHHH
Confidence            35789999999986421111    233344444444     58999999999998653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.33  E-value=0.00027  Score=46.63  Aligned_cols=53  Identities=19%  Similarity=0.207  Sum_probs=34.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+ ......++         .++...+.+..++    .+++++||++|.|+.+.
T Consensus       124 ~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l  185 (201)
T 2q3h_A          124 KAPIILVGTQSDLRE-DVKVLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKEV  185 (201)
T ss_dssp             SSCEEEEEECGGGGG-CHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEECHhhhh-chhhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHHH
Confidence            357899999999875 22211111         2334444554443    58999999999998653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.31  E-value=0.0001  Score=47.51  Aligned_cols=49  Identities=20%  Similarity=0.175  Sum_probs=32.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       116 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A          116 DVALMLLGNKVDSAHERVVK----REDGEKLAKEYG-----LPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             TCEEEEEEECCSTTSCCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred             CCcEEEEEECcccCcccccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            35799999999997521111    122333444444     48999999999998653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.31  E-value=0.00015  Score=46.04  Aligned_cols=48  Identities=25%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+. +..    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       108 ~~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A          108 EAQLLLVGNKSDMETR-VVT----ADQGEALAKELG-----IPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             TCEEEEEEECTTCTTC-CSC----HHHHHHHHHHHT-----CCEEECBTTTTBSHHHH
T ss_pred             CCcEEEEEECccCCcC-ccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            3579999999998531 111    122333444444     48999999999998653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.31  E-value=0.00014  Score=47.79  Aligned_cols=52  Identities=17%  Similarity=0.052  Sum_probs=31.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+...  .+++    ...+..........+++++||.+|.|+.+.
T Consensus       124 ~~piilv~NK~Dl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l  175 (188)
T 1zd9_A          124 GIPVLVLGNKRDLPGALD--EKEL----IEKMNLSAIQDREICCYSISCKEKDNIDIT  175 (188)
T ss_dssp             TCCEEEEEECTTSTTCCC--HHHH----HHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEECCCCccCCC--HHHH----HHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence            357999999999975211  1111    111211112223578999999999998653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.31  E-value=9.1e-05  Score=49.43  Aligned_cols=53  Identities=25%  Similarity=0.253  Sum_probs=34.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHH-----HHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQE-----IVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+. ......     ..++.+.+.+..+.    .+++++||.+|.|+.+.
T Consensus       113 ~~piilv~nK~Dl~~~-~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l  170 (212)
T 2j0v_A          113 NVPIVLVGTKLDLRDD-KGYLADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKAV  170 (212)
T ss_dssp             TCCEEEEEECHHHHTC-HHHHHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEeCHHhhhC-ccccccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHHH
Confidence            3579999999998752 211000     12334455555554    58999999999998653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.29  E-value=8.3e-05  Score=47.85  Aligned_cols=50  Identities=20%  Similarity=0.123  Sum_probs=32.5

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +..++|++.||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       114 ~~~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A          114 TQPLVALVGNKIDLEHMRTIK----PEKHLRFCQENG-----FSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             CCCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHH
T ss_pred             CCCeEEEEEEccccccccccC----HHHHHHHHHHcC-----CcEEEEeCCCCCCHHHH
Confidence            455689999999986411100    122334444444     58999999999998653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.29  E-value=0.00035  Score=51.08  Aligned_cols=54  Identities=17%  Similarity=0.087  Sum_probs=35.6

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC--CceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~--~~~iipiSA~~G~ni~~~   71 (97)
                      +.++++||+|+.+  ...+....++++..+...+....  ..+++|+||++|.|+.+.
T Consensus       196 p~ivv~NK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L  251 (341)
T 2p67_A          196 ADLIVINKDDGDN--HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEI  251 (341)
T ss_dssp             CSEEEECCCCTTC--HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHH
T ss_pred             cCEEEEECCCCCC--hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHH
Confidence            4689999999974  33455444555555544321001  358999999999998654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.29  E-value=0.00018  Score=46.23  Aligned_cols=49  Identities=20%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+. +..    .++++.+.+...    ..+++++||.+|.|+.+.
T Consensus       116 ~~p~i~v~nK~Dl~~~-~~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l  164 (177)
T 1wms_A          116 SFPFVILGNKIDISER-QVS----TEEAQAWCRDNG----DYPYFETSAKDATNVAAA  164 (177)
T ss_dssp             TSCEEEEEECTTCSSC-SSC----HHHHHHHHHHTT----CCCEEECCTTTCTTHHHH
T ss_pred             CCcEEEEEECCccccc-ccC----HHHHHHHHHhcC----CceEEEEeCCCCCCHHHH
Confidence            3478999999998741 111    122333443222    368999999999998653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.28  E-value=9.6e-05  Score=48.35  Aligned_cols=48  Identities=21%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+...    ++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       122 ~p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A          122 VNKLLVGNKCDLTTKKVVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQS  169 (196)
T ss_dssp             CEEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----CCEEEECTTTCTTHHHH
T ss_pred             CCEEEEEECcccccccccCH----HHHHHHHHHcC-----CcEEEEeCCCCCCHHHH
Confidence            47899999999875221111    22333444444     58999999999998653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.27  E-value=0.00015  Score=47.90  Aligned_cols=49  Identities=18%  Similarity=0.106  Sum_probs=32.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    .++.+.+.+..+     .+++++||++|.|+.+.
T Consensus       113 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A          113 NAQVLLVGNKCDMEDERVVS----SERGRQLADHLG-----FEFFEASAKDNINVKQT  161 (203)
T ss_dssp             SCEEEEEEECTTCTTSCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSSHHH
T ss_pred             CCCEEEEEECcccCcccccC----HHHHHHHHHHCC-----CeEEEEECCCCCCHHHH
Confidence            45799999999997521111    122333444444     48999999999998553

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.27  E-value=5e-06  Score=64.52  Aligned_cols=56  Identities=23%  Similarity=0.343  Sum_probs=34.7

Q ss_pred             ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC----CCCceEEEeeeccCCCCCCC
Q psy15201          8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR----DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~----~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++.+|++ +|+++||+|+.+++.++.   ..+    +...++.    ....+++|+||++|.|+.+.
T Consensus        98 ~~~~~~vP-iIVviNKiDl~~~~~~~v---~~~----l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL  157 (501)
T 1zo1_I           98 HAKAAQVP-VVVAVNKIDKPEADPDRV---KNE----LSQYGILPEEWGGESQFVHVSAKAGTGIDEL  157 (501)
T ss_dssp             HHHHTTCC-EEEEEECSSSSTTCCCCT---TCC----CCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred             HHHhcCce-EEEEEEeccccccCHHHH---HHH----HHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence            34557775 999999999986332211   111    1111111    12479999999999998664

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.27  E-value=0.00016  Score=47.91  Aligned_cols=51  Identities=20%  Similarity=0.068  Sum_probs=31.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|+++||+|+.+..  ..+++    ...+..........+++++||.+|.|+.+
T Consensus       130 ~~piilv~NK~Dl~~~~--~~~~i----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  180 (192)
T 2b6h_A          130 DAVLLVFANKQDMPNAM--PVSEL----TDKLGLQHLRSRTWYVQATCATQGTGLYD  180 (192)
T ss_dssp             TCEEEEEEECTTSTTCC--CHHHH----HHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred             CCeEEEEEECCCCCCCC--CHHHH----HHHhCcccccCCceEEEECcCCCcCCHHH
Confidence            45899999999997521  11222    22221111222347899999999999865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.25  E-value=8.6e-05  Score=47.14  Aligned_cols=48  Identities=17%  Similarity=0.093  Sum_probs=32.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+..+..    .++++.+.+..+     .+++++||.+|.|+.+
T Consensus       109 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  156 (168)
T 1z2a_A          109 DIPTALVQNKIDLLDDSCIK----NEEAEGLAKRLK-----LRFYRTSVKEDLNVSE  156 (168)
T ss_dssp             SCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CEEEECBTTTTBSSHH
T ss_pred             CCCEEEEEECcccCcccccC----HHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Confidence            35799999999987421111    123344444444     4899999999999854

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.25  E-value=8.3e-05  Score=47.77  Aligned_cols=49  Identities=20%  Similarity=0.023  Sum_probs=31.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+.....    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       113 ~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B          113 DVCRILVGNKNDDPERKVVE----TEDAYKFAGQMG-----IQLFETSAKENVNVEEM  161 (181)
T ss_dssp             TSEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CCEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEECCCCchhcccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            35789999999986421111    122333444444     48999999999998653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.25  E-value=0.00011  Score=47.76  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|..+ .+..    .++++.+++..+     .+++++||.+|.|+.+.
T Consensus       148 ~piilv~NK~D~~~-~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  194 (208)
T 3clv_A          148 YIIILVANKIDKNK-FQVD----ILEVQKYAQDNN-----LLFIQTSAKTGTNIKNI  194 (208)
T ss_dssp             CEEEEEEECTTCC--CCSC----HHHHHHHHHHTT-----CEEEEECTTTCTTHHHH
T ss_pred             CcEEEEEECCCccc-ccCC----HHHHHHHHHHcC-----CcEEEEecCCCCCHHHH
Confidence            78999999999321 1111    233444555443     59999999999998653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.25  E-value=7.6e-05  Score=47.87  Aligned_cols=47  Identities=19%  Similarity=0.089  Sum_probs=30.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+..+...    ++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       120 ~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  166 (179)
T 2y8e_A          120 VIIMLVGNKTDLSDKRQVST----EEGERKAKELN-----VMFIETSAKAGYNVKQ  166 (179)
T ss_dssp             SEEEEEEECGGGGGGCCSCH----HHHHHHHHHHT-----CEEEEEBTTTTBSHHH
T ss_pred             CcEEEEEECCcccccCcCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence            57899999999874111111    22233334334     5899999999999854

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.24  E-value=0.0002  Score=50.55  Aligned_cols=51  Identities=14%  Similarity=0.122  Sum_probs=29.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+..  .+.....++++...++..+     .+++++||.+|+++.+.
T Consensus       144 ~~pvi~V~nK~D~~~--~~e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~~~~~~l  194 (274)
T 3t5d_A          144 KVNIIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENKL  194 (274)
T ss_dssp             TSCEEEEESSGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCC-----------
T ss_pred             cCCEEEEEeccCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEcCCCCCChhHHHH
Confidence            357999999999974  5566666677777666544     47888999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.24  E-value=0.00014  Score=47.21  Aligned_cols=48  Identities=17%  Similarity=0.100  Sum_probs=27.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       114 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  161 (183)
T 2fu5_C          114 VEKMILGNKCDVNDKRQVS----KERGEKLALDYG-----IKFMETSAKANINVENA  161 (183)
T ss_dssp             CEEEEEEEC--CCSCCCSC----HHHHHHHHHHHT-----CEEEECCC---CCHHHH
T ss_pred             CCEEEEEECccCCccCcCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            5799999999987521111    123334444444     58999999999998653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.22  E-value=0.00011  Score=48.03  Aligned_cols=47  Identities=19%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+. +..    .++++.+.+..+     .+++++||.+|.|+.+.
T Consensus       127 ~p~ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A          127 VPMVLVGNKCDLPTR-TVD----TKQAHELAKSYG-----IPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             CCEEEEEECTTCSCC-CSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred             CeEEEEEECCcCCcc-cCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            579999999998751 111    123344444444     48999999999998653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.21  E-value=7.8e-05  Score=47.61  Aligned_cols=48  Identities=13%  Similarity=-0.051  Sum_probs=31.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|++.||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       109 ~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A          109 DLPVILVGNKSDLARSREVS----LEEGRHLAGTLS-----CKHIETSAALHHNTRE  156 (169)
T ss_dssp             CCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred             CCCEEEEeeCcchhhcccCC----HHHHHHHHHHcC-----CcEEEecCccCCCHHH
Confidence            35799999999987311111    123334444444     5899999999999865

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.21  E-value=0.00012  Score=47.96  Aligned_cols=47  Identities=15%  Similarity=0.055  Sum_probs=31.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+. +..    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       115 ~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  161 (199)
T 2gf0_A          115 IPVMLVGNKCDETQR-EVD----TREAQAVAQEWK-----CAFMETSAKMNYNVKEL  161 (199)
T ss_dssp             SCEEEEEECTTCSSC-SSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred             CCEEEEEECccCCcc-ccC----HHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Confidence            478999999998751 111    122233344444     48999999999998653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.21  E-value=8.7e-05  Score=49.17  Aligned_cols=51  Identities=16%  Similarity=0.070  Sum_probs=31.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC-------CCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG-------FRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~-------~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|++.||+|+.+.  ...    +++...++...       ......+++++||++|.|+.+
T Consensus       124 ~~piilv~NK~Dl~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  181 (190)
T 1m2o_B          124 DVPFVILGNKIDAPNA--VSE----AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE  181 (190)
T ss_dssp             TCCEEEEEECTTSTTC--CCH----HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred             CCCEEEEEECCCCcCC--CCH----HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHH
Confidence            4579999999998751  111    22233332111       011347899999999999865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.21  E-value=0.00036  Score=50.17  Aligned_cols=49  Identities=29%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+.|+++||+|+.. ..+.+.   +.+..+.+..++    .+++|+||++|.|+.+.
T Consensus       117 ~P~ilvlNK~D~~~-~~~~~~---~~l~~l~~~~~~----~~~i~iSA~~g~~v~~l  165 (301)
T 1ega_A          117 APVILAVNKVDNVQ-EKADLL---PHLQFLASQMNF----LDIVPISAETGLNVDTI  165 (301)
T ss_dssp             SCEEEEEESTTTCC-CHHHHH---HHHHHHHTTSCC----SEEEECCTTTTTTHHHH
T ss_pred             CCEEEEEECcccCc-cHHHHH---HHHHHHHHhcCc----CceEEEECCCCCCHHHH
Confidence            57899999999985 233332   333333332333    48999999999998653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.30  E-value=5.1e-05  Score=50.50  Aligned_cols=53  Identities=28%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+. ....+.+         .++...+.+..++    .+++++||.+|.|+.+.
T Consensus       134 ~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~l  195 (204)
T 3th5_A          134 NTPIILVGTKLDLRDD-KDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTV  195 (204)
Confidence            3578999999999752 1111111         1222223332222    38999999999999765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.19  E-value=0.00044  Score=44.57  Aligned_cols=52  Identities=13%  Similarity=-0.006  Sum_probs=31.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+.++...  ..++.+.+.+..+    ..+++++||.+|.|+.+.
T Consensus       108 ~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l  159 (178)
T 2iwr_A          108 GLALALVGTQDRISASSPRVV--GDARARALXADMK----RCSYYETXATYGLNVDRV  159 (178)
T ss_dssp             CCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHS----SEEEEEEBTTTTBTHHHH
T ss_pred             CCCEEEEEECccccccccCcC--CHHHHHHHHHhhc----CCeEEEEeccccCCHHHH
Confidence            357999999999842111000  0122333444332    269999999999998653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.19  E-value=7.5e-05  Score=47.62  Aligned_cols=47  Identities=15%  Similarity=0.143  Sum_probs=31.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       112 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  158 (170)
T 1z08_A          112 ICLCIVGNKIDLEKERHVS----IQEAESYAESVG-----AKHYHTSAKQNKGIEE  158 (170)
T ss_dssp             SEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEEEBTTTTBSHHH
T ss_pred             CeEEEEEECcccccccccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence            5789999999987411111    123344444444     5899999999999865

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.19  E-value=0.00016  Score=46.88  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeec-cCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~-~G~ni~~   70 (97)
                      .++|+++||+|+.+..+..    .++.+.+.+..+     .+++++||. +|.|+.+
T Consensus       124 ~p~ilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A          124 FPMILVANKVDLMHLRKVT----RDQGKEMATKYN-----IPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             CCEEEEEECTTCSTTCCSC----HHHHHHHHHHHT-----CCEEEEBCSSSCBSHHH
T ss_pred             CcEEEEEECCCchhccCcC----HHHHHHHHHHhC-----CeEEEeccCCCCCCHHH
Confidence            4689999999987421111    123344444444     579999999 9999865

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.18  E-value=8.6e-05  Score=47.23  Aligned_cols=49  Identities=14%  Similarity=0.078  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       109 ~~pii~v~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  157 (172)
T 2erx_A          109 SIPIMLVGNKCDESPSREVQ----SSEAEALARTWK-----CAFMETSAKLNHNVKEL  157 (172)
T ss_dssp             CCCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEEccccccccccC----HHHHHHHHHHhC-----CeEEEecCCCCcCHHHH
Confidence            35799999999986421100    112233333333     58999999999998653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.18  E-value=0.0003  Score=45.82  Aligned_cols=48  Identities=15%  Similarity=0.080  Sum_probs=31.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+... .    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       121 ~~p~ilv~nK~Dl~~~~~-~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A          121 DIVNMLVGNKIDKENREV-D----RNEGLKFARKHS-----MLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             CCEEEEEEECTTSSSCCS-C----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             CCcEEEEEECCcCccccc-C----HHHHHHHHHHcC-----CEEEEecCCCCCCHHHH
Confidence            457899999999864211 1    122334444433     58999999999998653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.18  E-value=0.00012  Score=47.99  Aligned_cols=49  Identities=18%  Similarity=0.070  Sum_probs=32.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       127 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l  175 (189)
T 2gf9_A          127 NAQVILVGNKCDLEDERVVP----AEDGRRLADDLG-----FEFFEASAKENINVKQV  175 (189)
T ss_dssp             TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEECcccccccCCC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            45799999999987421101    123344445445     48999999999998653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.17  E-value=0.0004  Score=45.93  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHH---HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDR---FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~---~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|++.||+|+++ .+.+   ..++..+....+..........+++++||++ .|+.+
T Consensus       129 ~~piilv~nK~Dl~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~  186 (196)
T 3llu_A          129 DMNFEVFIHKVDGLS-DDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE  186 (196)
T ss_dssp             TCEEEEEEECGGGSC-HHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred             CCcEEEEEeccccCc-hhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence            457999999999985 2222   2233333322222222212347999999999 98754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.17  E-value=0.00049  Score=49.33  Aligned_cols=49  Identities=14%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++-++.|+++||+|+++  .+.    .+....+++..+     .+++++||.+|.|+.+
T Consensus        47 ~l~~kp~ilVlNK~DL~~--~~~----~~~~~~~~~~~g-----~~~i~iSA~~~~gi~~   95 (282)
T 1puj_A           47 ILKNKPRIMLLNKADKAD--AAV----TQQWKEHFENQG-----IRSLSINSVNGQGLNQ   95 (282)
T ss_dssp             HCSSSCEEEEEECGGGSC--HHH----HHHHHHHHHTTT-----CCEEECCTTTCTTGGG
T ss_pred             HHCCCCEEEEEECcccCC--HHH----HHHHHHHHHhcC-----CcEEEEECCCcccHHH
Confidence            357789999999999985  322    223334444333     4789999999999865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.14  E-value=0.00028  Score=51.36  Aligned_cols=52  Identities=19%  Similarity=0.092  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..  ..++    +...+..........+++++||++|.|+.+.
T Consensus       266 ~~piilV~NK~Dl~~~~--~~~~----i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el  317 (329)
T 3o47_A          266 DAVLLVFANKQDLPNAM--NAAE----ITDKLGLHSLRHRNWYIQATCATSGDGLYEG  317 (329)
T ss_dssp             TCEEEEEEECTTSTTCC--CHHH----HHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred             CCeEEEEEECccCCccc--CHHH----HHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence            34799999999998521  1122    2222221122234579999999999998653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.14  E-value=0.00015  Score=48.34  Aligned_cols=51  Identities=18%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhC---------CC---CCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAG---------FR---DSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~---------~~---~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|++.||+|+.+.  ..    .++++.+++...         +.   ....+++++||++|.|+.+
T Consensus       126 ~~piilv~NK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~  188 (198)
T 1f6b_A          126 NVPILILGNKIDRPEA--IS----EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE  188 (198)
T ss_dssp             TSCEEEEEECTTSTTC--CC----HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred             CCcEEEEEECCCcccc--CC----HHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence            3579999999998741  11    122333332111         10   1347899999999999864

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.14  E-value=0.0003  Score=49.74  Aligned_cols=52  Identities=29%  Similarity=0.407  Sum_probs=34.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|+++||+|+.+ .....+.+         .++...+.+..++    .+++++||++|.|+.+
T Consensus       259 ~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~  319 (332)
T 2wkq_A          259 NTPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKT  319 (332)
T ss_dssp             TSCEEEEEECHHHHT-CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred             CCcEEEEEEchhccc-ccchhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHH
Confidence            457999999999875 22222221         1234445554443    4899999999999865

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.14  E-value=9.7e-05  Score=47.49  Aligned_cols=51  Identities=20%  Similarity=0.148  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+. +...  ..++.+.+.+...    ..+++++||.+|.|+.+.
T Consensus       118 ~~p~ilv~nK~Dl~~~-~~~v--~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l  168 (182)
T 1ky3_A          118 TFPFVILGNKIDAEES-KKIV--SEKSAQELAKSLG----DIPLFLTSAKNAINVDTA  168 (182)
T ss_dssp             TCCEEEEEECTTSCGG-GCCS--CHHHHHHHHHHTT----SCCEEEEBTTTTBSHHHH
T ss_pred             CCcEEEEEECCccccc-cccC--CHHHHHHHHHhcC----CCeEEEEecCCCCCHHHH
Confidence            3478999999998641 1000  0122333333222    368999999999998653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.13  E-value=0.00036  Score=46.23  Aligned_cols=48  Identities=25%  Similarity=0.222  Sum_probs=31.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+. +..    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       125 ~~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  172 (213)
T 3cph_A          125 EAQLLLVGNKSDMETR-VVT----ADQGEALAKELG-----IPFIESSAKNDDNVNEI  172 (213)
T ss_dssp             CSEEEEEEECTTCSSC-CSC----HHHHHHHHHHHT-----CCEEECBTTTTBSSHHH
T ss_pred             CCCEEEEEECCCCccc-ccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            3579999999998531 111    122233444444     47999999999998654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.12  E-value=3.9e-05  Score=48.52  Aligned_cols=48  Identities=17%  Similarity=0.075  Sum_probs=31.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       108 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A          108 KVPVILVGNKVDLESEREVS----SSEGRALAEEWG-----CPFMETSAKSKTMVDE  155 (167)
T ss_dssp             CCCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----SCEEEECTTCHHHHHH
T ss_pred             CCCEEEEEECCcccccccCC----HHHHHHHHHHhC-----CCEEEecCCCCcCHHH
Confidence            35799999999986411111    122333444444     4899999999998854

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.12  E-value=0.00015  Score=47.73  Aligned_cols=49  Identities=18%  Similarity=0.089  Sum_probs=32.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       128 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A          128 NAQVILVGNKCDMEEERVVP----TEKGQLLAEQLG-----FDFFEASAKENISVRQA  176 (191)
T ss_dssp             TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEECCCCccccccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            45799999999986411111    122333444444     48999999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.12  E-value=7.1e-05  Score=49.43  Aligned_cols=49  Identities=14%  Similarity=0.083  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++++++||+|+.+..+..    .++++.+.+..+     .+++++||.+|.|+.+.
T Consensus       128 ~~piiiv~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  176 (192)
T 2fg5_A          128 NIVMAIAGNKCDLSDIREVP----LKDAKEYAESIG-----AIVVETSAKNAINIEEL  176 (192)
T ss_dssp             TCEEEEEEECGGGGGGCCSC----HHHHHHHHHTTT-----CEEEECBTTTTBSHHHH
T ss_pred             CCcEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHHH
Confidence            45799999999986411111    133444454433     58999999999998653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.10  E-value=0.00014  Score=47.04  Aligned_cols=49  Identities=18%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    .++++.+.+..+     .+++++||.+|.|+.+.
T Consensus       127 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  175 (195)
T 3bc1_A          127 NPDIVLCGNKSDLEDQRAVK----EEEARELAEKYG-----IPYFETSAANGTNISHA  175 (195)
T ss_dssp             SCCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEECcccccccccC----HHHHHHHHHHcC-----CCEEEEECCCCCCHHHH
Confidence            35799999999987411101    123344444444     48999999999998653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.10  E-value=0.0001  Score=46.76  Aligned_cols=47  Identities=13%  Similarity=0.124  Sum_probs=30.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+..+..    .++...+.+..+     .+++++||.+|.|+.+
T Consensus       112 ~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A          112 IVIALSGNKADLANKRAVD----FQEAQSYADDNS-----LLFMETSAKTSMNVNE  158 (170)
T ss_dssp             CEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred             CcEEEEEECccCccccccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence            4688889999986411111    122333444333     5899999999999865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.09  E-value=0.00031  Score=46.33  Aligned_cols=48  Identities=21%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+. +..    .++...+.+..    ...+++++||++|.|+.+.
T Consensus       118 ~piilv~nK~Dl~~~-~~~----~~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l  165 (207)
T 1vg8_A          118 FPFVVLGNKIDLENR-QVA----TKRAQAWCYSK----NNIPYFETSAKEAINVEQA  165 (207)
T ss_dssp             SCEEEEEECTTSSCC-CSC----HHHHHHHHHHT----TSCCEEECBTTTTBSHHHH
T ss_pred             CcEEEEEECCCCccc-ccC----HHHHHHHHHhc----CCceEEEEeCCCCCCHHHH
Confidence            478999999998741 111    12233333322    2368999999999998654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.09  E-value=0.00021  Score=47.71  Aligned_cols=50  Identities=10%  Similarity=0.031  Sum_probs=33.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+-.    .++++.+.+..++    .+++++||.+|.|+.+.
T Consensus       134 ~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l  183 (201)
T 2hup_A          134 NIVQLLIGNKSDLSELREVS----LAEAQSLAEHYDI----LCAIETSAKDSSNVEEA  183 (201)
T ss_dssp             TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTTC----SEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEECCccccccccC----HHHHHHHHHHcCC----CEEEEEeCCCCCCHHHH
Confidence            35789999999986411101    1234445555443    38999999999998653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.08  E-value=0.0002  Score=47.11  Aligned_cols=49  Identities=20%  Similarity=0.177  Sum_probs=32.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       126 ~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  174 (191)
T 2a5j_A          126 NMVIMLIGNKSDLESRRDVK----REEGEAFAREHG-----LIFMETSAKTACNVEEA  174 (191)
T ss_dssp             TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHH
T ss_pred             CCCEEEEEECcccCCccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            35789999999986411101    123334444444     48999999999998653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.08  E-value=0.00019  Score=47.61  Aligned_cols=49  Identities=16%  Similarity=0.117  Sum_probs=32.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+-..    ++...+.+..+     .+++++||.+|.|+.+.
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l  161 (206)
T 2bcg_Y          113 TVLKLLVGNKCDLKDKRVVEY----DVAKEFADANK-----MPFLETSALDSTNVEDA  161 (206)
T ss_dssp             TCEEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----CCEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEECCCCccccccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            357899999999975211111    22333444433     58999999999998654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.07  E-value=0.00014  Score=46.21  Aligned_cols=48  Identities=13%  Similarity=0.054  Sum_probs=31.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ..+++++.||+|+.+..+..    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       111 ~~~iilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A          111 SIVVAIAGNKCDLTDVREVM----ERDAKDYADSIH-----AIFVETSAKNAININE  158 (170)
T ss_dssp             TSEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred             CCcEEEEEECCccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHH
Confidence            35688999999987421100    122333444333     5899999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.07  E-value=0.00059  Score=49.85  Aligned_cols=52  Identities=17%  Similarity=0.294  Sum_probs=34.3

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .|+ +.|+++||+|+++ ..+ ..+..+++..+++..++     +++++||.+|.|+.+.
T Consensus       116 ~~~-~~vivlnK~DL~~-~~~-~~~~~~~~~~~y~~~g~-----~v~~~sa~~~~g~~~L  167 (307)
T 1t9h_A          116 NDI-QPIICITKMDLIE-DQD-TEDTIQAYAEDYRNIGY-----DVYLTSSKDQDSLADI  167 (307)
T ss_dssp             TTC-EEEEEEECGGGCC-CHH-HHHHHHHHHHHHHHHTC-----CEEECCHHHHTTCTTT
T ss_pred             CCC-CEEEEEECCccCc-hhh-hHHHHHHHHHHHHhCCC-----eEEEEecCCCCCHHHH
Confidence            355 5689999999996 222 11112334455555564     7899999999988654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.06  E-value=0.00066  Score=44.69  Aligned_cols=51  Identities=8%  Similarity=-0.061  Sum_probs=32.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+.++...  ..++.+.+.+..+.    .+++++||.+|.|+.+.
T Consensus       120 ~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~----~~~~e~Sa~~~~gv~~l  170 (184)
T 3ihw_A          120 VPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKR----CTYYETCATYGLNVERV  170 (184)
T ss_dssp             SCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTT----CEEEEEBTTTTBTHHHH
T ss_pred             CCEEEEEECccccccccccc--CHHHHHHHHHHcCC----CeEEEecCCCCCCHHHH
Confidence            46899999999852111100  01334445554442    68999999999998653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.06  E-value=0.0003  Score=45.92  Aligned_cols=52  Identities=21%  Similarity=0.291  Sum_probs=33.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeec-cCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~-~G~ni~~   70 (97)
                      -.++|++.||+|+.+ +.....++         .++.+.+.+..+.    .+++++||+ +|.|+.+
T Consensus       111 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~gi~~  172 (184)
T 1m7b_A          111 NTKMLLVGCKSDLRT-DVSTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD  172 (184)
T ss_dssp             TCEEEEEEECGGGGG-CHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECBTTTBHHHHHH
T ss_pred             CCCEEEEEEcchhhc-chhhHhhhhhcccCCCCHHHHHHHHHHcCC----cEEEEeeecCCCcCHHH
Confidence            468999999999874 22222221         1334555555553    689999998 6888754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.06  E-value=0.00047  Score=49.59  Aligned_cols=48  Identities=23%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+  +...    ++.+.+.+..+-  . .+++++||++|.|+.+.
T Consensus       116 ~piilv~NK~DL~~--~~~v----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~l  163 (301)
T 1u0l_A          116 LETVMVINKMDLYD--EDDL----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEEL  163 (301)
T ss_dssp             CEEEEEECCGGGCC--HHHH----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHHH
T ss_pred             CCEEEEEeHHHcCC--chhH----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHHH
Confidence            47899999999985  2222    233344443331  1 58999999999998654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.06  E-value=7.6e-05  Score=50.22  Aligned_cols=49  Identities=14%  Similarity=0.078  Sum_probs=30.8

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +.++++||+|+.+..+...+++.+.    ++..+   ...+++++||.+|.|+.+.
T Consensus       156 ~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~i~~~Sa~~g~gi~~l  204 (221)
T 2wsm_A          156 ADLIVINKVALAEAVGADVEKMKAD----AKLIN---PRAKIIEMDLKTGKGFEEW  204 (221)
T ss_dssp             CSEEEEECGGGHHHHTCCHHHHHHH----HHHHC---TTSEEEECBTTTTBTHHHH
T ss_pred             CCEEEEecccCCcchhhHHHHHHHH----HHHhC---CCCeEEEeecCCCCCHHHH
Confidence            5789999999863100123333333    33333   2379999999999998653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.05  E-value=8.3e-05  Score=48.18  Aligned_cols=48  Identities=13%  Similarity=-0.042  Sum_probs=32.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       112 ~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  159 (181)
T 3t5g_A          112 IPIMLVGNKKDLHMERVIS----YEEGKALAESWN-----AAFLESSAKENQTAVDV  159 (181)
T ss_dssp             CCEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-----CEEEECCTTSHHHHHHH
T ss_pred             CCEEEEEECccchhcceec----HHHHHHHHHHhC-----CcEEEEecCCCCCHHHH
Confidence            4789999999986421111    133444455444     58999999999988653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.04  E-value=7.9e-06  Score=63.89  Aligned_cols=60  Identities=25%  Similarity=0.258  Sum_probs=34.8

Q ss_pred             ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++..|+ ++|+++||+|+.+.+.++.   ..++..+-..........+++|+||++|.|+.+.
T Consensus        99 ~~~~~~v-PiIVViNKiDl~~~~~~~v---~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           99 HAKDAHV-PIVLAINKCDKAEADPEKV---KKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             HHHTTTC-CEEECCBSGGGTTTSCCSS---SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             HHHHcCC-cEEEEEecccccccchHHH---HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            3455677 5899999999875322211   1122111000000012479999999999998653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.04  E-value=0.00033  Score=46.03  Aligned_cols=50  Identities=14%  Similarity=0.192  Sum_probs=24.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc-CCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT-GENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~-G~ni~~~   71 (97)
                      -.++|+++||+|+.+. +...  ..+++..+.+..+     .+++++||.+ |.|+.+.
T Consensus       132 ~~piilv~nK~Dl~~~-~~~v--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi~~l  182 (208)
T 2yc2_C          132 PLRAVLVANKTDLPPQ-RHQV--RLDMAQDWATTNT-----LDFFDVSANPPGKDADAP  182 (208)
T ss_dssp             CCEEEEEEECC--------CC--CHHHHHHHHHHTT-----CEEEECCC-------CHH
T ss_pred             CCcEEEEEECcccchh-hccC--CHHHHHHHHHHcC-----CEEEEeccCCCCcCHHHH
Confidence            4579999999998740 1110  1233445555544     5999999999 9998654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.03  E-value=0.00014  Score=47.72  Aligned_cols=49  Identities=18%  Similarity=0.178  Sum_probs=32.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+..    .++.+.+.+..+     .+++++||++|.|+.+.
T Consensus       130 ~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  178 (193)
T 2oil_A          130 TIVVMLVGNKSDLSQAREVP----TEEARMFAENNG-----LLFLETSALDSTNVELA  178 (193)
T ss_dssp             TCEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEEECTTTCTTHHHH
T ss_pred             CCeEEEEEECCCcccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            35799999999987411111    123334444433     58999999999998653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.02  E-value=0.00012  Score=47.01  Aligned_cols=48  Identities=23%  Similarity=0.115  Sum_probs=30.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+..+-.    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       115 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A          115 FPVVLVGNKADLESQRQVP----RSEASAFGASHH-----VAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             CCEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHHH
T ss_pred             CCEEEEEECcccccccccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Confidence            4789999999987411100    122233333333     58999999999998653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.02  E-value=4.8e-05  Score=50.52  Aligned_cols=51  Identities=16%  Similarity=0.049  Sum_probs=31.4

Q ss_pred             CeEEEEEEcCCCCCCCHH-HHHHH-HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQD-RFQEI-VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~-~~~~i-~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|+++||+|+.+.... ....+ .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~SA~~g~gv~e  186 (199)
T 2p5s_A          134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-----ALFCETSAKDGSNIVE  186 (199)
T ss_dssp             CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred             CCEEEEEECcccccccccccccccCHHHHHHHHHHcC-----CeEEEeeCCCCCCHHH
Confidence            479999999998621000 00001 123344444444     5899999999999865

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.01  E-value=0.00015  Score=47.07  Aligned_cols=48  Identities=21%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+..+..    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       116 ~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A          116 IVIILCGNKKDLDADREVT----FLEASRFAQENE-----LMFLETSALTGENVEEA  163 (186)
T ss_dssp             CEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             CcEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEecCCCCCCHHHH
Confidence            4799999999986311111    122333444433     58999999999998653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.97  E-value=0.00012  Score=48.47  Aligned_cols=50  Identities=20%  Similarity=0.109  Sum_probs=32.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+-.    .++.+.+.+...    ..+++++||++|.|+.+.
T Consensus       131 ~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~----~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          131 DAELLLVGNKLDCETDREIT----RQQGEKFAQQIT----GMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             TCEEEEEEECGGGGGGCCSC----HHHHHHHHHTST----TCEEEECBTTTTBSHHHH
T ss_pred             CCcEEEEEECcccccccccC----HHHHHHHHHhcC----CCeEEEEeCCCCCCHHHH
Confidence            35799999999986421101    122334443321    368999999999998653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.96  E-value=0.00019  Score=48.06  Aligned_cols=50  Identities=20%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-.++|+++||+|+.+..+-.    .++++.+.+..+     .+++++||.+|.|+.+.
T Consensus       140 ~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l  189 (217)
T 2f7s_A          140 ENPDIVLIGNKADLPDQREVN----ERQARELADKYG-----IPYFETSAATGQNVEKA  189 (217)
T ss_dssp             TCCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEEEBTTTTBTHHHH
T ss_pred             CCCCEEEEEECCccccccccC----HHHHHHHHHHCC-----CcEEEEECCCCCCHHHH
Confidence            345799999999987411100    123344444444     58999999999998654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.95  E-value=0.00019  Score=47.83  Aligned_cols=48  Identities=23%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+-..    .+...+.+..+     .+++++||.+|.|+.+.
T Consensus       131 ~piilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l  178 (200)
T 2o52_A          131 IVVILCGNKKDLDPEREVTF----LEASRFAQENE-----LMFLETSALTGENVEEA  178 (200)
T ss_dssp             CEEEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHHH
T ss_pred             CcEEEEEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            57999999999863111111    22333444433     58999999999998653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.93  E-value=0.00022  Score=48.00  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=31.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+..+-.    .++.+.+.+..+     .+++++||++|.|+.+.
T Consensus       131 ~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~l  179 (201)
T 2ew1_A          131 KVITVLVGNKIDLAERREVS----QQRAEEFSEAQD-----MYYLETSAKESDNVEKL  179 (201)
T ss_dssp             TCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred             CCCEEEEEECCCCccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            35789999999986411100    122333344334     58999999999998654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.92  E-value=0.00037  Score=50.28  Aligned_cols=46  Identities=17%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|+++||+|+.+. ...   +.+.++.+   .+    ..+++|+||.+|.|+.+
T Consensus       117 ~~p~ilV~NK~Dl~~~-~~~---~~~~~~~~---~~----~~~~~~iSA~~g~gv~~  162 (301)
T 1wf3_A          117 KVPILLVGNKLDAAKY-PEE---AMKAYHEL---LP----EAEPRMLSALDERQVAE  162 (301)
T ss_dssp             TSCEEEEEECGGGCSS-HHH---HHHHHHHT---ST----TSEEEECCTTCHHHHHH
T ss_pred             CCCEEEEEECcccCCc-hHH---HHHHHHHh---cC----cCcEEEEeCCCCCCHHH
Confidence            3579999999999852 221   22222222   22    36899999999998744

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.92  E-value=0.00023  Score=46.93  Aligned_cols=47  Identities=28%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~   70 (97)
                      .++|++.||+|+.+..+-.    .++...+.+..+     .+++++||.+|. |+.+
T Consensus       133 ~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~~gi~~  180 (196)
T 2atv_A          133 VTLILVGNKADLDHSRQVS----TEEGEKLATELA-----CAFYECSACTGEGNITE  180 (196)
T ss_dssp             CCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----SEEEECCTTTCTTCHHH
T ss_pred             CcEEEEEECcccccccccC----HHHHHHHHHHhC-----CeEEEECCCcCCcCHHH
Confidence            4799999999986411111    122333344334     589999999999 8865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.89  E-value=0.0008  Score=50.18  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .|++ .|+++||+|+++  .+..+.+ +++...++..|+     +++++||.+|.++...
T Consensus       159 ~~~~-~iivlNK~DL~~--~~~~~~~-~~~~~~y~~~G~-----~v~~~Sa~~~~gl~~L  209 (358)
T 2rcn_A          159 LQVE-PLIVLNKIDLLD--DEGMDFV-NEQMDIYRNIGY-----RVLMVSSHTQDGLKPL  209 (358)
T ss_dssp             HTCE-EEEEEECGGGCC--HHHHHHH-HHHHHHHHTTTC-----CEEECBTTTTBTHHHH
T ss_pred             cCCC-EEEEEECccCCC--chhHHHH-HHHHHHHHhCCC-----cEEEEecCCCcCHHHH
Confidence            4665 489999999996  3222222 233344455565     6899999999987553

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.89  E-value=0.00012  Score=48.59  Aligned_cols=48  Identities=13%  Similarity=0.014  Sum_probs=31.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       130 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A          130 VPVVLVGNKADLSPEREVQ----AVEGKKLAESWG-----ATFMESSARENQLTQGI  177 (201)
T ss_dssp             CCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECCTTCHHHHHHH
T ss_pred             CCEEEEEECccCccccccC----HHHHHHHHHHhC-----CeEEEEeCCCCCCHHHH
Confidence            4789999999987421111    122233444444     58999999999988653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.88  E-value=7.9e-05  Score=47.11  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++++++||+|+.+. +       +++..+. ..++    .+++++||.+|.|+.+
T Consensus       109 ~p~ilv~nK~Dl~~~-~-------~~~~~~~-~~~~----~~~~~~Sa~~~~gv~~  151 (161)
T 2dyk_A          109 KPVILVATKVDDPKH-E-------LYLGPLY-GLGF----GDPIPTSSEHARGLEE  151 (161)
T ss_dssp             CCEEEEEECCCSGGG-G-------GGCGGGG-GGSS----CSCEECBTTTTBSHHH
T ss_pred             CCEEEEEECcccccc-h-------HhHHHHH-hCCC----CCeEEEecccCCChHH
Confidence            468999999999752 1       1222222 2333    3789999999999854

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.87  E-value=0.00031  Score=48.12  Aligned_cols=48  Identities=19%  Similarity=0.086  Sum_probs=30.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|.||+|+.+..+-.    .++.+.+.+..+     .+++++||++|.|+.+.
T Consensus       146 ~piilVgNK~DL~~~r~v~----~~e~~~~a~~~~-----~~~~e~SAk~g~~v~el  193 (211)
T 2g3y_A          146 IPIILVGNKSDLVRCREVS----VSEGRACAVVFD-----CKFIETSAAVQHNVKEL  193 (211)
T ss_dssp             SCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred             CcEEEEEEChHHhcCceEe----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            5799999999986411100    111222333333     58999999999998654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.87  E-value=5.4e-05  Score=53.42  Aligned_cols=47  Identities=11%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+  .....   .....+.+..+     .+++|+||.+|.|+.+.
T Consensus       111 ~pvilv~NK~Dl~~--~~~~~---~~~~~l~~~lg-----~~vi~~SA~~g~gi~el  157 (256)
T 3iby_A          111 KPVVVALNMMDIAE--HRGIS---IDTEKLESLLG-----CSVIPIQAHKNIGIPAL  157 (256)
T ss_dssp             SCEEEEEECHHHHH--HTTCE---ECHHHHHHHHC-----SCEEECBGGGTBSHHHH
T ss_pred             CCEEEEEEChhcCC--cCCcH---HHHHHHHHHcC-----CCEEEEECCCCCCHHHH
Confidence            37999999999763  11011   11122223334     58999999999998653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.86  E-value=0.00054  Score=46.09  Aligned_cols=52  Identities=21%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeec-cCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGL-TGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~-~G~ni~~   70 (97)
                      -.++|++.||+|+.+ +.....++         .++.+.+.+..+.    .+++++||+ +|.|+.+
T Consensus       132 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SAk~~~~gv~~  193 (205)
T 1gwn_A          132 NTKMLLVGCKSDLRT-DVSTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD  193 (205)
T ss_dssp             TCEEEEEEECGGGGG-CHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred             CCCEEEEEechhhcc-chhhhhhhcccccCCCCHHHHHHHHHHcCC----CEEEEeeeccCCcCHHH
Confidence            457999999999874 22222221         1334455555543    589999999 6788754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.82  E-value=0.00012  Score=49.37  Aligned_cols=48  Identities=27%  Similarity=0.131  Sum_probs=29.9

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.++++||+|+.+..+...+    ++...++..+.   ..+++++||.+|.|+.+
T Consensus       166 ~~iiv~NK~Dl~~~~~~~~~----~~~~~~~~~~~---~~~~~~~Sa~~g~gv~~  213 (226)
T 2hf9_A          166 ADLIVINKIDLADAVGADIK----KMENDAKRINP---DAEVVLLSLKTMEGFDK  213 (226)
T ss_dssp             CSEEEEECGGGHHHHTCCHH----HHHHHHHHHCT---TSEEEECCTTTCTTHHH
T ss_pred             CCEEEEeccccCchhHHHHH----HHHHHHHHhCC---CCeEEEEEecCCCCHHH
Confidence            34999999998631001122    23333333332   36999999999999865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.81  E-value=0.00044  Score=46.03  Aligned_cols=49  Identities=12%  Similarity=-0.065  Sum_probs=32.0

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+..+-..    ++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       130 ~~piilv~nK~Dl~~~~~v~~----~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A          130 DLPVILVGNKSDLARSREVSL----EEGRHLAGTLS-----CKHIETSAALHHNTREL  178 (195)
T ss_dssp             CCCEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSHHHH
T ss_pred             CCCEEEEeechhccccCCcCH----HHHHHHHHHhC-----CEEEEEcCCCCCCHHHH
Confidence            357999999999974211111    22333444433     58999999999998653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.81  E-value=0.00084  Score=46.19  Aligned_cols=16  Identities=19%  Similarity=0.160  Sum_probs=13.9

Q ss_pred             ceEEEeeeccCCCCCC
Q psy15201         55 IEYVPCSGLTGENLTT   70 (97)
Q Consensus        55 ~~iipiSA~~G~ni~~   70 (97)
                      .+++|+||.+|.|+.+
T Consensus       231 ~~~~~~SA~~~~gi~~  246 (262)
T 1yrb_A          231 VRVLYLSAKTREGFED  246 (262)
T ss_dssp             CCCEECCTTTCTTHHH
T ss_pred             ccceEEEecCcccHHH
Confidence            5889999999999864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.79  E-value=0.00019  Score=48.34  Aligned_cols=47  Identities=19%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+...      ..+...+.+..+     .+++++||.+|.|+.+.
T Consensus       119 ~~p~ilv~nK~Dl~~~~~------~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A          119 NIPIVLCGNKVDIKDRKV------KAKSIVFHRKKN-----LQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             TCCEEEEEECTTSSSCSS------CGGGCCHHHHHT-----CEEEECBGGGTBTTTHH
T ss_pred             CCCEEEEEECCccccccc------cHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            357999999999875211      112222333333     58999999999999654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=96.77  E-value=0.0014  Score=51.82  Aligned_cols=50  Identities=20%  Similarity=0.351  Sum_probs=34.1

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++ ++|+++||+|+.+.+   .+++.+++...+   ++.  ..+++++||++|.|+.+
T Consensus       122 ~~i-piIvViNKiDl~~a~---~~~v~~ei~~~l---g~~--~~~vi~vSAktg~GI~~  171 (599)
T 3cb4_D          122 MDL-EVVPVLNKIDLPAAD---PERVAEEIEDIV---GID--ATDAVRCSAKTGVGVQD  171 (599)
T ss_dssp             TTC-EEEEEEECTTSTTCC---HHHHHHHHHHHT---CCC--CTTCEEECTTTCTTHHH
T ss_pred             CCC-CEEEeeeccCccccc---HHHHHHHHHHHh---CCC--cceEEEeecccCCCchh
Confidence            466 689999999998643   333344444433   442  24689999999999854

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=96.75  E-value=0.0015  Score=46.96  Aligned_cols=50  Identities=28%  Similarity=0.412  Sum_probs=34.7

Q ss_pred             CeEEEEEEcCCCCCCCHHH---HHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDR---FQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL   68 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~---~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni   68 (97)
                      .++++++||+|+.+ .+.+   +....++++.+.+..++  ...+++++||++ .++
T Consensus       116 ~piilv~NK~Dl~~-~~~r~~~~~v~~~~~~~~~~~~g~--~~~~~~~tSa~~-~~i  168 (307)
T 3r7w_A          116 AKIFVLLHKMDLVQ-LDKREELFQIMMKNLSETSSEFGF--PNLIGFPTSIWD-ESL  168 (307)
T ss_dssp             CEEEEEEECGGGSC-HHHHHHHHHHHHHHHHHHHHTTTC--CSCEEEECCTTS-SHH
T ss_pred             CeEEEEEecccccc-hhhhhHHHHHHHHHHHHHHHHcCC--CCeEEEEeeecC-ChH
Confidence            58999999999985 1122   22444666777766664  247999999999 554

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=96.75  E-value=0.00094  Score=46.59  Aligned_cols=46  Identities=17%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+  +...    ++.+.+.+..    ...+++++||++|.|+.+
T Consensus       199 ~piilV~NK~Dl~~--~~~v----~~~~~~~~~~----~~~~~~e~SAk~g~gv~e  244 (255)
T 3c5h_A          199 KPIVVVLTKCDEGV--ERYI----RDAHTFALSK----KNLQVVETSARSNVNVDL  244 (255)
T ss_dssp             CCEEEEEECGGGBC--HHHH----HHHHHHHHTS----SSCCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEcccccc--cHHH----HHHHHHHHhc----CCCeEEEEECCCCCCHHH
Confidence            57999999999864  3222    3344444332    136899999999999865

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0003  Score=47.58  Aligned_cols=48  Identities=19%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+..+-.    .++...+.+..+     .+++++||.+|.|+.+.
T Consensus       119 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  166 (223)
T 3cpj_B          119 VAVGLIGNKSDLAHLRAVP----TEESKTFAQENQ-----LLFTETSALNSENVDKA  166 (223)
T ss_dssp             CEEEEEECCGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCCC-CCCHHHH
T ss_pred             CeEEEEEECcccccccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHH
Confidence            4789999999986411100    122334444433     58999999999998654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=96.72  E-value=0.00096  Score=52.77  Aligned_cols=51  Identities=20%  Similarity=0.220  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ..++ ++|+++||+|+.+.+   .+++.+++...   .++.  ..+++++||++|.|+.+
T Consensus       123 ~~~i-piIvviNKiDl~~a~---~~~v~~el~~~---lg~~--~~~vi~vSAktg~GI~~  173 (600)
T 2ywe_A          123 EQDL-VIIPVINKIDLPSAD---VDRVKKQIEEV---LGLD--PEEAILASAKEGIGIEE  173 (600)
T ss_dssp             HTTC-EEEEEEECTTSTTCC---HHHHHHHHHHT---SCCC--GGGCEECBTTTTBSHHH
T ss_pred             HCCC-CEEEEEeccCccccC---HHHHHHHHHHh---hCCC--cccEEEEEeecCCCchH
Confidence            3566 489999999998643   23333444333   2442  24689999999999843

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.72  E-value=0.0011  Score=50.98  Aligned_cols=46  Identities=22%  Similarity=0.256  Sum_probs=30.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+......    +++.    ..++    .+++++||++|.|+.+.
T Consensus       343 ~~piIvV~NK~Dl~~~~~~~~----~~l~----~~~~----~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          343 AAKFLTVANKLDRAANADALI----RAIA----DGTG----TEVIGISALNGDGIDTL  388 (476)
T ss_dssp             TSEEEEEEECTTSCTTTHHHH----HHHH----HHHT----SCEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEECcCCCCccchhH----HHHH----hcCC----CceEEEEECCCCCHHHH
Confidence            468999999999986322211    1121    1122    58999999999998553

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.69  E-value=0.00037  Score=45.63  Aligned_cols=47  Identities=17%  Similarity=0.014  Sum_probs=29.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccC---CCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTG---ENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G---~ni~~   70 (97)
                      .++|+++||+|+.+..+-.    .++.+.+.+..+     .+++++||++|   .|+.+
T Consensus       128 ~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A          128 IPRILVGNKCDLRSAIQVP----TDLAQKFADTHS-----MPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             CCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEECCSSSGGGGSCHHH
T ss_pred             CCEEEEEECccccccceeC----HHHHHHHHHHcC-----CEEEEEeCCcCCcccCHHH
Confidence            5789999999986411101    122334444433     58999999999   66643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.68  E-value=0.00075  Score=49.83  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=27.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN   67 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n   67 (97)
                      .++|+|+||+|+.+  .......++++..+++..     .++++++||.+|.|
T Consensus       175 ~piIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~-----~i~~~~~Sa~~~~~  220 (361)
T 2qag_A          175 VNIVPVIAKADTLT--LKERERLKKRILDEIEEH-----NIKIYHLPDAESDE  220 (361)
T ss_dssp             SCEEEEEECCSSSC--HHHHHHHHHHHHHHTTCC------CCSCCCC------
T ss_pred             CCEEEEEECCCCCC--HHHHHHHHHHHHHHHHHC-----CCCEEeCCCcCCCc
Confidence            46999999999984  444444445666555433     36889999999987

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.67  E-value=0.00086  Score=44.77  Aligned_cols=49  Identities=6%  Similarity=0.005  Sum_probs=24.1

Q ss_pred             CeEEEEEEcCCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201         15 NQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL   68 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni   68 (97)
                      .++|+++||+|+.+..  ....+.+.++++.+....+     .+++++||++|.+-
T Consensus       121 ~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~  171 (218)
T 1nrj_B          121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED  171 (218)
T ss_dssp             CCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred             CCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence            5699999999998622  2233333444554443332     57788999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.65  E-value=0.00016  Score=50.87  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++..++|+++||+|+.+  .....   .....+.+..+     .+++|+||.+|.|+.+.
T Consensus       107 ~~~~p~ilv~NK~Dl~~--~~~~~---~~~~~l~~~lg-----~~~~~~Sa~~g~gi~~l  156 (271)
T 3k53_A          107 MEVKNIILVLNKFDLLK--KKGAK---IDIKKMRKELG-----VPVIPTNAKKGEGVEEL  156 (271)
T ss_dssp             TTCCSEEEEEECHHHHH--HHTCC---CCHHHHHHHHS-----SCEEECBGGGTBTHHHH
T ss_pred             cCCCCEEEEEEChhcCc--ccccH---HHHHHHHHHcC-----CcEEEEEeCCCCCHHHH
Confidence            45468999999999753  11111   11222333334     58999999999997543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.64  E-value=0.00016  Score=53.36  Aligned_cols=47  Identities=28%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+++||+|+.+ .++       .++.+.+.+..   ..+++++||.+|.|+.+.
T Consensus       274 ~~p~ilV~NK~Dl~~-~~e-------~~~~l~~~l~~---~~~v~~iSA~tg~gi~eL  320 (342)
T 1lnz_A          274 ERPQIIVANKMDMPE-AAE-------NLEAFKEKLTD---DYPVFPISAVTREGLREL  320 (342)
T ss_dssp             TSCBCBEEECTTSTT-HHH-------HHHHHHHHCCS---CCCBCCCSSCCSSTTHHH
T ss_pred             CCCEEEEEECccCCC-CHH-------HHHHHHHHhhc---CCCEEEEECCCCcCHHHH
Confidence            467899999999975 221       22233333321   158899999999998654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.60  E-value=0.001  Score=48.72  Aligned_cols=47  Identities=28%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+  ...+++    ...+++..+     .+++++||.+|+|+.+.
T Consensus       280 ~~piilV~NK~Dl~~--~~~~~~----~~~~~~~~~-----~~~~~iSA~~g~gi~~l  326 (357)
T 2e87_A          280 DLPFLVVINKIDVAD--EENIKR----LEKFVKEKG-----LNPIKISALKGTGIDLV  326 (357)
T ss_dssp             TSCEEEEECCTTTCC--HHHHHH----HHHHHHHTT-----CCCEECBTTTTBTHHHH
T ss_pred             CCCEEEEEECcccCC--hHHHHH----HHHHHHhcC-----CCeEEEeCCCCcCHHHH
Confidence            467999999999985  333322    333333322     58899999999998654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.56  E-value=6.1e-05  Score=53.46  Aligned_cols=47  Identities=17%  Similarity=0.274  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|+||+|+.+  .....   ...+.+.+..+     .+++++||.+|.|+.+.
T Consensus       113 ~p~ivv~NK~Dl~~--~~~~~---~~~~~l~~~lg-----~~~i~~SA~~g~gi~el  159 (274)
T 3i8s_A          113 IPCIVALNMLDIAE--KQNIR---IEIDALSARLG-----CPVIPLVSTRGRGIEAL  159 (274)
T ss_dssp             CCEEEEEECHHHHH--HTTEE---ECHHHHHHHHT-----SCEEECCCGGGHHHHHH
T ss_pred             CCEEEEEECccchh--hhhHH---HHHHHHHHhcC-----CCEEEEEcCCCCCHHHH
Confidence            36899999999763  11100   11222333334     58999999999998654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.56  E-value=0.0025  Score=45.11  Aligned_cols=45  Identities=16%  Similarity=0.154  Sum_probs=30.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -++.|+++||+|+++  .+..    ++...+++..++     ++ ++||.+|.|+.+
T Consensus        46 ~k~~iivlNK~DL~~--~~~~----~~~~~~~~~~g~-----~v-~iSa~~~~gi~~   90 (262)
T 3cnl_A           46 RKETIILLNKVDIAD--EKTT----KKWVEFFKKQGK-----RV-ITTHKGEPRKVL   90 (262)
T ss_dssp             TSEEEEEEECGGGSC--HHHH----HHHHHHHHHTTC-----CE-EECCTTSCHHHH
T ss_pred             CCCcEEEEECccCCC--HHHH----HHHHHHHHHcCC-----eE-EEECCCCcCHHH
Confidence            578899999999996  3222    233445554454     56 899999998754

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.54  E-value=0.00077  Score=46.36  Aligned_cols=48  Identities=19%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|.||+|+.+..+  .  -.++.+.+.+..+     .+++.+||++|.|+.+.
T Consensus       119 ~piilVgNK~Dl~~~r~--V--~~~e~~~~a~~~~-----~~~~e~SAktg~nV~e~  166 (216)
T 4dkx_A          119 VIIMLVGNKTDLADKRQ--V--SIEEGERKAKELN-----VMFIETSAKAGYNVKQL  166 (216)
T ss_dssp             SEEEEEEECTTCGGGCC--S--CHHHHHHHHHHHT-----CEEEEEBTTTTBSHHHH
T ss_pred             CeEEEEeeccchHhcCc--c--cHHHHhhHHHHhC-----CeeEEEeCCCCcCHHHH
Confidence            47899999999864111  0  1233445555555     58999999999998664

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.52  E-value=0.00035  Score=45.01  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+  +....   .+.+.+.+..+     .+++++||++|.|+.+
T Consensus       109 ~p~ilv~nK~Dl~~--~~~~~---~~~~~~~~~~~-----~~~~~~SA~~~~~v~~  154 (165)
T 2wji_A          109 ANLLLALNKMDLAK--SLGIE---IDVDKLEKILG-----VKVVPLSAAKKMGIEE  154 (165)
T ss_dssp             CCEEEEEECHHHHH--HTTCC---CCHHHHHHHHT-----SCEEECBGGGTBSHHH
T ss_pred             CCEEEEEEchHhcc--ccChh---hHHHHHHHHhC-----CCEEEEEcCCCCCHHH
Confidence            46899999999752  10000   11223333334     4899999999999865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.52  E-value=0.0014  Score=44.18  Aligned_cols=52  Identities=19%  Similarity=0.096  Sum_probs=33.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHH---------HHHHHHHHHHHHhCCCCCCceEEEeeeccCCC-CCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQ---------EIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~---------~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~~   70 (97)
                      -.++|++.||+|+.+. .....         ...++...+.+..++    .+++++||++|.| +.+
T Consensus       131 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~  192 (214)
T 3q3j_B          131 STRVLLIGCKTDLRTD-LSTLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHS  192 (214)
T ss_dssp             TSEEEEEEECGGGGGC-HHHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHH
T ss_pred             CCCEEEEEEChhhccc-hhhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHH
Confidence            3579999999998741 11111         112334455555553    4899999999998 754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.42  E-value=0.0018  Score=42.35  Aligned_cols=53  Identities=15%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHH-HHHHHHHHHhCCCCCCceEEEeeeccCC-CCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIV-TKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~-~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~   70 (97)
                      .++|++.||+|+.+  +....... +..+.+.+..+++ ...+++++||++|. ++.+
T Consensus       113 ~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~~~~~  167 (184)
T 2zej_A          113 SPVILVGTHLDVSD--EKQRKACMSKITKELLNKRGFP-AIRDYHFVNATEESDALAK  167 (184)
T ss_dssp             CEEEEEEECGGGCC--HHHHHHHHHHHHHHTTTCTTSC-EEEEEEECCTTSCCHHHHH
T ss_pred             CcEEEEEECCCccc--chhhHHHHHHHHHHHHHhcCCc-chhheEEEecccCchhHHH
Confidence            57899999999974  32222111 2222232222321 01249999999996 6543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.41  E-value=0.00048  Score=48.50  Aligned_cols=47  Identities=21%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+  ...   +......+.+..+     ++++++||.+|.|+.+.
T Consensus       111 ~pvilv~NK~Dl~~--~~~---i~~~~~~l~~~lg-----~~vi~~SA~~g~gi~el  157 (258)
T 3a1s_A          111 KKVILAMTAIDEAK--KTG---MKIDRYELQKHLG-----IPVVFTSSVTGEGLEEL  157 (258)
T ss_dssp             CCEEEEEECHHHHH--HTT---CCBCHHHHHHHHC-----SCEEECCTTTCTTHHHH
T ss_pred             CCEEEEEECcCCCC--ccc---hHHHHHHHHHHcC-----CCEEEEEeeCCcCHHHH
Confidence            46899999999753  100   0111233334445     58999999999998653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.39  E-value=0.00049  Score=45.27  Aligned_cols=48  Identities=21%  Similarity=0.122  Sum_probs=31.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeee-ccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG-LTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA-~~G~ni~~   70 (97)
                      -.++|++.||+|+.+..+-.    .++...+.+..+     .+++++|| .+|.|+.+
T Consensus       127 ~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A          127 SIPALLLGNKLDMAQYRQVT----KAEGVALAGRFG-----CLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             CCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CEEEECCSSSCSHHHHH
T ss_pred             CCCEEEEEECcchhhcCccC----HHHHHHHHHHcC-----CcEEEEeecCccccHHH
Confidence            35799999999986411101    123344455444     48999999 89998854

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.31  E-value=0.00097  Score=44.22  Aligned_cols=48  Identities=19%  Similarity=0.108  Sum_probs=29.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+...  ..  .++.+.+....+     .+++++||++|.|+.+.
T Consensus       115 ~piilV~NK~Dl~~~r~--v~--~~~~~~~a~~~~-----~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A          115 IPIILVGNKSDLVRXRE--VS--VSEGRAXAVVFD-----XKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             CCEEEEEECTTCGGGCC--SC--HHHHHHHHHHTT-----CEEEECBTTTTBSHHHH
T ss_pred             CeEEEEEechhhhcccc--cc--HHHHHHHHHHhC-----CceEEeccccCCCHHHH
Confidence            46999999999863111  00  111222222222     58999999999998654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=96.26  E-value=0.001  Score=51.16  Aligned_cols=48  Identities=17%  Similarity=0.148  Sum_probs=27.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|.||+|+.+..+-.    .++++.+.+..+     .+++++||.+|.|+.+.
T Consensus       151 ~pvilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~vSA~~g~gi~eL  198 (535)
T 3dpu_A          151 SPVIVVMNKIDENPSYNIE----QKKINERFPAIE-----NRFHRISCKNGDGVESI  198 (535)
T ss_dssp             CCEEEEECCTTTCTTCCCC----HHHHHHHCGGGT-----TCEEECCC-----CTTH
T ss_pred             CCEEEEEECCCcccccccC----HHHHHHHHHhcC-----CceEEEecCcccCHHHH
Confidence            5799999999987521111    123333443333     57999999999999765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.23  E-value=0.0039  Score=45.72  Aligned_cols=54  Identities=17%  Similarity=0.007  Sum_probs=31.7

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC--CCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF--RDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +.++++||+|+.+  .........++...++....  .....+++++||++|.|+.+.
T Consensus       214 ~~ivVlNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L  269 (349)
T 2www_A          214 ADLVAVTKSDGDL--IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEM  269 (349)
T ss_dssp             CSEEEECCCSGGG--HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHH
T ss_pred             CCEEEEeeecCCC--chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHH
Confidence            5688999999874  32222233333333322110  001358999999999998654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.21  E-value=0.0057  Score=40.35  Aligned_cols=54  Identities=13%  Similarity=0.138  Sum_probs=33.7

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++ +.+++.||+|+..  ........+.+..++.....   ...++|+||+++.|+.+.
T Consensus       136 ~~~-~~~~v~nK~D~~s--~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sal~~~~~~~l  189 (210)
T 1pui_A          136 SNI-AVLVLLTKADKLA--SGARKAQLNMVREAVLAFNG---DVQVETFSSLKKQGVDKL  189 (210)
T ss_dssp             TTC-CEEEEEECGGGSC--HHHHHHHHHHHHHHHGGGCS---CEEEEECBTTTTBSHHHH
T ss_pred             cCC-CeEEEEecccCCC--chhHHHHHHHHHHHHHhcCC---CCceEEEeecCCCCHHHH
Confidence            344 4678899999874  32222222344455543322   368999999999988653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.20  E-value=0.00063  Score=47.71  Aligned_cols=49  Identities=22%  Similarity=0.099  Sum_probs=30.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHh--CCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQA--GFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|+||+|+.+......    +    .++..  .......+++++||.+|.|+.+.
T Consensus       193 ~~~i~V~NK~Dl~~~~~~~~----~----~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l  243 (299)
T 2aka_B          193 QRTIGVITKLDLMDEGTDAR----D----VLENKLLPLRRGYIGVVNRSQKDIDGKKDI  243 (299)
T ss_dssp             SSEEEEEECGGGSCTTCCCH----H----HHTTCSSCCTTCEEECCCCCCBCTTSCBCH
T ss_pred             CeEEEEEEccccCCCCchHH----H----HHhCCcCcCCCCcEEEECCChhhccccccH
Confidence            47899999999985211111    1    12211  11112368999999999999764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.19  E-value=0.0067  Score=47.10  Aligned_cols=16  Identities=6%  Similarity=-0.080  Sum_probs=13.6

Q ss_pred             ceEEEeeeccCCCCCC
Q psy15201         55 IEYVPCSGLTGENLTT   70 (97)
Q Consensus        55 ~~iipiSA~~G~ni~~   70 (97)
                      +|++++||++|.|+.+
T Consensus       251 ~PV~~gSA~~~~GV~~  266 (528)
T 3tr5_A          251 TPIFFGSAINNFGVGE  266 (528)
T ss_dssp             EEEEECBGGGTBSHHH
T ss_pred             eEEEeccccCCccHHH
Confidence            5899999999999743

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.15  E-value=0.00073  Score=48.11  Aligned_cols=49  Identities=14%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +|+ ++|+++||+|+.+  ....   ......+.+..+     ++++++||.+|.|+.+.
T Consensus       106 ~~~-p~ilv~NK~Dl~~--~~~~---~~~~~~l~~~lg-----~~vi~~SA~~g~gi~el  154 (272)
T 3b1v_A          106 TGI-PVTIALNMIDVLD--GQGK---KINVDKLSYHLG-----VPVVATSALKQTGVDQV  154 (272)
T ss_dssp             TCS-CEEEEEECHHHHH--HTTC---CCCHHHHHHHHT-----SCEEECBTTTTBSHHHH
T ss_pred             cCC-CEEEEEEChhhCC--cCCc---HHHHHHHHHHcC-----CCEEEEEccCCCCHHHH
Confidence            344 6899999999752  1000   011222333334     58999999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.14  E-value=0.004  Score=44.78  Aligned_cols=49  Identities=12%  Similarity=0.114  Sum_probs=28.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||.|+.+  ++.....++++..+++..+     ++++++||.+| |+.+.
T Consensus       156 ~~iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~-~v~e~  204 (301)
T 2qnr_A          156 VNIVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAES-DEDED  204 (301)
T ss_dssp             SCEEEEECCGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCCC----------
T ss_pred             CCEEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEecCCccc-cccHH
Confidence            36899999999874  4444444566777776655     57899999999 88764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=96.11  E-value=0.00072  Score=51.29  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+....      +..+.+.+..     ..+++++||.+|.|+.+.
T Consensus       141 ~piIvV~NK~Dl~~~~~~------~~~~~l~~~~-----g~~v~~vSAktg~gI~eL  186 (423)
T 3qq5_A          141 IPFVVVVNKIDVLGEKAE------ELKGLYESRY-----EAKVLLVSALQKKGFDDI  186 (423)
T ss_dssp             CCEEEECCCCTTTTCCCT------HHHHHSSCCT-----TCCCCCCSSCCTTSTTTH
T ss_pred             CCEEEEEeCcCCCCccHH------HHHHHHHHHc-----CCCEEEEECCCCCCHHHH
Confidence            368999999999863221      1111111111     368999999999998654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.10  E-value=0.0022  Score=49.33  Aligned_cols=47  Identities=34%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-+++|+++||+|+.+. . ..    +++..+.   +.   ..+++++||++|.|+.+.
T Consensus       349 ~~~piivV~NK~DL~~~-~-~~----~~~~~~~---~~---~~~~i~iSAktg~Gi~eL  395 (482)
T 1xzp_A          349 KNKRYLVVINKVDVVEK-I-NE----EEIKNKL---GT---DRHMVKISALKGEGLEKL  395 (482)
T ss_dssp             TTSSEEEEEEECSSCCC-C-CH----HHHHHHH---TC---STTEEEEEGGGTCCHHHH
T ss_pred             cCCCEEEEEECcccccc-c-CH----HHHHHHh---cC---CCcEEEEECCCCCCHHHH
Confidence            34679999999999752 1 11    2222222   22   258999999999999765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.06  E-value=0.0061  Score=44.56  Aligned_cols=54  Identities=22%  Similarity=0.193  Sum_probs=31.3

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CC-CceEEEeeeccCCCCCCC
Q psy15201         17 LGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR-DS-DIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        17 ~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~-~~-~~~iipiSA~~G~ni~~~   71 (97)
                      .++++||+|+.+ ........++++...+...... .. ..+++++||++|.|+.+.
T Consensus       196 ~ivvlNK~Dl~~-~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L  251 (337)
T 2qm8_A          196 DMIAVNKADDGD-GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSL  251 (337)
T ss_dssp             SEEEEECCSTTC-CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHH
T ss_pred             cEEEEEchhccC-chhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHH
Confidence            477789999864 2333333334443333222200 00 358999999999998664

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.95  E-value=6.2e-05  Score=49.96  Aligned_cols=49  Identities=20%  Similarity=0.185  Sum_probs=25.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+++||+|+.+..+...    ++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       138 ~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          138 NVNKLLVGNKCDLTTKKVVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQS  186 (199)
T ss_dssp             CSEEEEC-CCSSCC--CCCCS----CC-CHHHHTTT-----CCBCCCCC---HHHHHH
T ss_pred             CCCEEEEEECccCCccccCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHH
Confidence            357899999999874211000    11223333333     57899999999998653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.94  E-value=0.0011  Score=43.00  Aligned_cols=47  Identities=19%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+  ....   ....+.+.+..+     .+++++||.+|.|+.+.
T Consensus       113 ~piilv~nK~Dl~~--~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l  159 (188)
T 2wjg_A          113 ANLLLALNKMDLAK--SLGI---EIDVDKLEKILG-----VKVVPLSAAKKMGIEEL  159 (188)
T ss_dssp             CCEEEEEECHHHHH--HTTC---CCCHHHHHHHHT-----SCEEECBGGGTBSHHHH
T ss_pred             CCEEEEEEhhhccc--cccc---hHHHHHHHHHhC-----CCeEEEEecCCCCHHHH
Confidence            36899999999752  1000   112233333334     48999999999998654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.91  E-value=0.00022  Score=46.59  Aligned_cols=41  Identities=22%  Similarity=0.159  Sum_probs=27.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+++||+|+.+...+           +.+     ....+++++||++|.|+.+.
T Consensus       116 ~p~ilv~NK~Dl~~~~~~-----------~~~-----~~~~~~~~~SA~~g~gv~~l  156 (172)
T 2gj8_A          116 LPITVVRNKADITGETLG-----------MSE-----VNGHALIRLSARTGEGVDVL  156 (172)
T ss_dssp             CCEEEEEECHHHHCCCCE-----------EEE-----ETTEEEEECCTTTCTTHHHH
T ss_pred             CCEEEEEECccCCcchhh-----------hhh-----ccCCceEEEeCCCCCCHHHH
Confidence            468999999997531100           000     02368999999999998654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.70  E-value=0.01  Score=44.83  Aligned_cols=47  Identities=28%  Similarity=0.420  Sum_probs=31.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -++.|+++||+|+..  ...+    +++...++..+     .+++++||+++.|+.+.
T Consensus       269 ~~P~ILVlNKlDl~~--~~~~----~~l~~~l~~~g-----~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          269 RRPSLVALNKVDLLE--EEAV----KALADALAREG-----LAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             HSCEEEEEECCTTSC--HHHH----HHHHHHHHTTT-----SCEEECCTTTCTTHHHH
T ss_pred             cCCEEEEEECCChhh--HHHH----HHHHHHHHhcC-----CeEEEEECCCccCHHHH
Confidence            356788889999874  2222    33334443322     58999999999998543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.63  E-value=0.013  Score=44.37  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=30.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|+|+||+|+..  .......++++...++..+     ++++.+||.+++|+.+
T Consensus       168 v~iIlVinK~Dll~--~~ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~~~v~~  216 (418)
T 2qag_C          168 VNIIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENK  216 (418)
T ss_dssp             SEEEEEEESTTSSC--HHHHHHHHHHHHHHHHHHT-----CCCCCCC---------
T ss_pred             CcEEEEEEcccCcc--HHHHHHHHHHHHHHHHHcC-----CeEEeCCCCCCcCHHH
Confidence            47999999999984  5566666677777777665     4667788888887754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.58  E-value=0.018  Score=42.63  Aligned_cols=53  Identities=19%  Similarity=0.174  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+|.||+|+.+....   ...+.+..+.+....  ...+++|+||++|.|+.+.
T Consensus       292 ~~p~ilV~NK~Dl~~~~~~---~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~L  344 (364)
T 2qtf_A          292 GKPILVTLNKIDKINGDLY---KKLDLVEKLSKELYS--PIFDVIPISALKRTNLELL  344 (364)
T ss_dssp             SCCEEEEEECGGGCCSCHH---HHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEECCCCCCchHH---HHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHHH
Confidence            3579999999998753221   112223233333311  1357899999999998654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.58  E-value=0.0038  Score=46.81  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.  +.+..++++    ..+...     ..+++|+||..+.++.+.
T Consensus       215 kP~i~v~NK~D~~--~~~~l~~l~----~~~~~~-----~~~vv~iSA~~e~~l~~L  260 (397)
T 1wxq_A          215 KPMVIAANKADAA--SDEQIKRLV----REEEKR-----GYIVIPTSAAAELTLRKA  260 (397)
T ss_dssp             SCEEEEEECGGGS--CHHHHHHHH----HHHHHT-----TCEEEEECHHHHHHHHSC
T ss_pred             CCEEEEEeCcccc--chHHHHHHH----HHHhhc-----CCcEEEEeccchhhHHHH
Confidence            7899999999987  333333332    222221     258999999999998654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.45  E-value=0.0051  Score=46.18  Aligned_cols=44  Identities=25%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHH-HHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKL-GAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l-~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +++|+++||+|+.+  . .    ..+. .++. ..++    .+++++||.+|.|+.+
T Consensus       111 ~p~ilv~NK~D~~~--~-~----~~~~~~~~~-~lg~----~~~~~iSA~~g~gv~~  155 (439)
T 1mky_A          111 VDTILVANKAENLR--E-F----EREVKPELY-SLGF----GEPIPVSAEHNINLDT  155 (439)
T ss_dssp             CCEEEEEESCCSHH--H-H----HHHTHHHHG-GGSS----CSCEECBTTTTBSHHH
T ss_pred             CCEEEEEeCCCCcc--c-c----HHHHHHHHH-hcCC----CCEEEEeccCCCCHHH
Confidence            57899999999752  1 1    1122 2332 3444    3679999999999854

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.96  E-value=0.0031  Score=47.32  Aligned_cols=43  Identities=30%  Similarity=0.437  Sum_probs=26.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +++|+++||+|+.+. .       .++.++. ..++    .+++++||.+|.|+.+
T Consensus       112 ~pvilv~NK~D~~~~-~-------~~~~~~~-~lg~----~~~~~iSA~~g~gv~~  154 (436)
T 2hjg_A          112 KPVVLAVNKLDNTEM-R-------ANIYDFY-SLGF----GEPYPISGTHGLGLGD  154 (436)
T ss_dssp             SCEEEEEECCCC-------------CCCSSG-GGSS----CCCEECBTTTTBTHHH
T ss_pred             CCEEEEEECccCccc-h-------hhHHHHH-HcCC----CCeEEEeCcCCCChHH
Confidence            579999999998741 1       1111122 2343    3679999999998744

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=94.61  E-value=0.0026  Score=51.76  Aligned_cols=49  Identities=22%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHH--hCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQ--AGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~--~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+|+||+|+++.... ...       +++.  ..+.....+++|+||.+|.|+.+.
T Consensus       218 ~pvIlVlNKiDlv~~~~~-~~~-------il~~~~~~l~lg~~~VV~iSA~~G~GvdeL  268 (772)
T 3zvr_A          218 QRTIGVITKLDLMDEGTD-ARD-------VLENKLLPLRRGYIGVVNRSQKDIDGKKDI  268 (772)
T ss_dssp             SSEEEEEECTTSSCTTCC-SHH-------HHTTCSSCCSSCEEECCCCCCEESSSSEEH
T ss_pred             CCEEEEEeCcccCCcchh-hHH-------HHHHHhhhhhccCCceEEecccccccchhH
Confidence            479999999999862211 111       1111  111113478999999999998664

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=94.59  E-value=0.011  Score=45.15  Aligned_cols=46  Identities=17%  Similarity=0.109  Sum_probs=30.2

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-+++|+++||+|+.+...  ..        .++  .+. ...+++++||.+|.|+.+.
T Consensus       329 ~~~piivV~NK~Dl~~~~~--~~--------~~~--~~~-~~~~~i~iSAktg~Gi~eL  374 (462)
T 3geh_A          329 KHRPLILVMNKIDLVEKQL--IT--------SLE--YPE-NITQIVHTAAAQKQGIDSL  374 (462)
T ss_dssp             TTSCEEEEEECTTSSCGGG--ST--------TCC--CCT-TCCCEEEEBTTTTBSHHHH
T ss_pred             cCCcEEEEEECCCCCcchh--hH--------HHH--Hhc-cCCcEEEEECCCCCCHHHH
Confidence            3368999999999985211  00        011  111 2368999999999998654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=93.98  E-value=0.041  Score=43.90  Aligned_cols=50  Identities=20%  Similarity=0.184  Sum_probs=27.3

Q ss_pred             CCCeEEEEEEcCCCCCCC---H---HHHHHHHHHHHHH----HHHh-C---CCCCCceEEEeeec
Q psy15201         13 GVNQLGVVINKLDTVSWS---Q---DRFQEIVTKLGAF----LKQA-G---FRDSDIEYVPCSGL   63 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~---~---~~~~~i~~~l~~~----l~~~-~---~~~~~~~iipiSA~   63 (97)
                      |. ++++++||+|+.+..   .   +.+++..+.+...    +... +   +.....+++|+||.
T Consensus       230 ~~-~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk  293 (695)
T 2j69_A          230 GL-TVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSI  293 (695)
T ss_dssp             CC-CEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHH
T ss_pred             CC-CEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeCh
Confidence            44 599999999987421   1   1333333333322    2211 1   11123579999999

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.96  E-value=0.028  Score=36.89  Aligned_cols=48  Identities=19%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++++++||+|+.+..+...    ++.+.+.+..+     ..++.+||+++.|+.+.
T Consensus       111 ~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~~-----~~~~d~Sal~~~~i~~l  158 (199)
T 2f9l_A          111 IVIMLVGNKSDLRHLRAVPT----DEARAFAEKNN-----LSFIETSALDSTNVEEA  158 (199)
T ss_dssp             CEEEEEEECTTCGGGCCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             CeEEEEEECcccccccCcCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHH
Confidence            57899999999864211111    22334444333     58899999999988553

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.70  E-value=0.09  Score=36.44  Aligned_cols=54  Identities=6%  Similarity=-0.054  Sum_probs=27.8

Q ss_pred             CeEEEEEEcCCCCCCCH----HHHHHHHHHHHHHHHHh-CCCCC--CceEEEeeeccCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQ----DRFQEIVTKLGAFLKQA-GFRDS--DIEYVPCSGLTGENL   68 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~----~~~~~i~~~l~~~l~~~-~~~~~--~~~iipiSA~~G~ni   68 (97)
                      +++|+++||+|+.+.++    +..++..+.++.++++. +...-  ....+|+|+..+...
T Consensus       152 ~~~ivv~nK~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~  212 (262)
T 3def_A          152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGR  212 (262)
T ss_dssp             GGEEEEEECTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTT
T ss_pred             cCEEEEEeCcccCCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCC
Confidence            47899999999874222    22333233455555443 22100  012266666665544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.40  E-value=0.02  Score=43.14  Aligned_cols=43  Identities=30%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +++|+++||+|+.+. .       ....++. ..++    -+.+++||.+|.|+.+
T Consensus       132 ~pvilV~NK~D~~~~-~-------~~~~e~~-~lg~----~~~~~iSA~~g~gv~~  174 (456)
T 4dcu_A          132 KPVVLAVNKLDNTEM-R-------ANIYDFY-SLGF----GEPYPISGTHGLGLGD  174 (456)
T ss_dssp             SCEEEEEECC-----------------CCSG-GGSS----SSEEECCTTTCTTHHH
T ss_pred             CCEEEEEECccchhh-h-------hhHHHHH-HcCC----CceEEeecccccchHH
Confidence            579999999998641 1       1111111 2233    3557999999998854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=93.38  E-value=0.049  Score=43.43  Aligned_cols=47  Identities=23%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL   68 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni   68 (97)
                      .++ ++|+++||+|+...   .+.++.++++..+   +.. ....++|+|+  |.++
T Consensus       126 ~~~-p~ilviNK~Dl~~~---~~~~~~~~l~~~l---~~~-~~~~~ipisa--~~~~  172 (693)
T 2xex_A          126 YGV-PRIVFVNKMDKLGA---NFEYSVSTLHDRL---QAN-AAPIQLPIGA--EDEF  172 (693)
T ss_dssp             TTC-CEEEEEECTTSTTC---CHHHHHHHHHHHH---CCC-EEESEEEECC--GGGC
T ss_pred             cCC-CEEEEEECCCcccc---chHHHHHHHHHHh---CCC-ceeEEeeccc--CCCc
Confidence            455 57899999999863   2444556666555   321 1246789998  5544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=93.26  E-value=0.0047  Score=45.08  Aligned_cols=49  Identities=22%  Similarity=0.098  Sum_probs=29.9

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCC--CCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGF--RDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|+||+|+.+...+ ..       .+++...+  .....+++++||.+|.|+.+.
T Consensus       198 ~~~i~V~NK~Dl~~~~~~-~~-------~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l  248 (353)
T 2x2e_A          198 QRTIGVITKLDLMDEGTD-AR-------DVLENKLLPLRRGYIGVVNRSQKDIDGKKDI  248 (353)
T ss_dssp             TTEEEEEECGGGSCTTCC-CH-------HHHTTCSSCCTTCEEECCCCCHHHHHTTCCH
T ss_pred             CceEEEeccccccCcchh-HH-------HHHhCCcccccCCceEEEeCCcccccccccH
Confidence            468999999999852211 11       11211111  112368899999999998654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=92.93  E-value=0.055  Score=39.96  Aligned_cols=54  Identities=19%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHH---HHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRF---QEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~---~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+++++.||+|+.+ .++|.   .++..+....+...++...+++++.+||++ .|+.+
T Consensus       107 ipillvgNK~DL~~-~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~e  163 (331)
T 3r7w_B          107 INIEVLIHKVDGLS-EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE  163 (331)
T ss_dssp             CEEEEECCCCCSSC-SHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred             CcEEEEEECcccCc-hhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHH
Confidence            47899999999985 23332   223332222221111111358999999987 46643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=92.80  E-value=0.051  Score=40.09  Aligned_cols=54  Identities=11%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHH------------------HHHHHHHHHHHHHHhCC--CCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDR------------------FQEIVTKLGAFLKQAGF--RDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~------------------~~~i~~~l~~~l~~~~~--~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|++.||+|+.+   ++                  .++..+.+...+..+..  ....+.++.+||.+|.|+.+
T Consensus       260 ~~piiLv~NK~DL~~---~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~  333 (353)
T 1cip_A          260 DTSIILFLNKKDLFE---EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF  333 (353)
T ss_dssp             TSEEEEEEECHHHHH---HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred             CCcEEEEEECcCchh---hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence            468999999999742   11                  22333333322222211  12457899999999999854

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=92.47  E-value=0.064  Score=41.55  Aligned_cols=55  Identities=15%  Similarity=0.091  Sum_probs=31.1

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +..|++ +|+++||+|+.+.+.   .++.++++..+   +.+.-...+...||.++.|+.+.
T Consensus       131 ~~~~ip-iivviNK~Dl~~~~~---~~~~~~i~~~l---~~~~~~~~~pi~sa~~~~Gv~dl  185 (529)
T 2h5e_A          131 RLRDTP-ILTFMNKLDRDIRDP---MELLDEVENEL---KIGCAPITWPIGCGKLFKGVYHL  185 (529)
T ss_dssp             TTTTCC-EEEEEECTTSCCSCH---HHHHHHHHHHH---CCEEEESEEEESCGGGCCEEEET
T ss_pred             HHcCCC-EEEEEcCcCCccccH---HHHHHHHHHHh---CCCccceecceecccCcceeeeh
Confidence            335664 899999999986322   23445555544   32100112222588888887554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.09  E-value=0.1  Score=33.64  Aligned_cols=14  Identities=14%  Similarity=0.157  Sum_probs=12.3

Q ss_pred             CeEEEEEEcCCCCC
Q psy15201         15 NQLGVVINKLDTVS   28 (97)
Q Consensus        15 k~~Iv~INK~D~v~   28 (97)
                      .++++++||+|+.+
T Consensus       157 ~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          157 IDILIACNKSELFT  170 (193)
T ss_dssp             CCEEEEEECTTSTT
T ss_pred             CCEEEEEEchHhcC
Confidence            57999999999985

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=91.81  E-value=0.064  Score=35.11  Aligned_cols=48  Identities=21%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++++++||+|+.+..+...    +..+.+.+..+     ..++.+||+++.|+.+
T Consensus       134 ~~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~~-----~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          134 NIVIMLVGNKSDLRHLRAVPT----DEARAFAEKNG-----LSFIETSALDSTNVEA  181 (191)
T ss_dssp             TCEEEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred             CCcEEEEEECcccccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence            357899999999864211111    22334444333     5889999999998754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=91.55  E-value=0.2  Score=39.76  Aligned_cols=16  Identities=38%  Similarity=0.366  Sum_probs=12.3

Q ss_pred             ccCCCeEEEEEEcCCCC
Q psy15201         11 VSGVNQLGVVINKLDTV   27 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v   27 (97)
                      ..|+ ++|+++||+|+.
T Consensus       124 ~~~i-p~ilv~NKiD~~  139 (665)
T 2dy1_A          124 RLGL-PRMVVVTKLDKG  139 (665)
T ss_dssp             HTTC-CEEEEEECGGGC
T ss_pred             HccC-CEEEEecCCchh
Confidence            3566 467889999986

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=91.41  E-value=0.11  Score=42.46  Aligned_cols=55  Identities=25%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             cCCCeEEEEEEcCCCCC----CC----HHHHHHHHHHHHHHHHHh-----C---CCCCCceEEEeeeccCCC
Q psy15201         12 SGVNQLGVVINKLDTVS----WS----QDRFQEIVTKLGAFLKQA-----G---FRDSDIEYVPCSGLTGEN   67 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~----~~----~~~~~~i~~~l~~~l~~~-----~---~~~~~~~iipiSA~~G~n   67 (97)
                      .++ ++|+++||+|+..    .+    ...++++.++++..+...     +   +.+...++...||++|-+
T Consensus       149 ~~~-p~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~  219 (842)
T 1n0u_A          149 ERI-KPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA  219 (842)
T ss_dssp             TTC-EEEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred             cCC-CeEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccc
Confidence            354 5789999999862    11    234566666666665431     1   322223577789988743

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=91.37  E-value=0.018  Score=39.63  Aligned_cols=54  Identities=13%  Similarity=-0.020  Sum_probs=30.1

Q ss_pred             CeEEEEEE-cCCCCCCCHHHHHHHH----HHHHHHHHHhCCCCC-CceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVIN-KLDTVSWSQDRFQEIV----TKLGAFLKQAGFRDS-DIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~IN-K~D~v~~~~~~~~~i~----~~l~~~l~~~~~~~~-~~~iipiSA~~G~ni~~~   71 (97)
                      .+.|+++| |+|+.+.+..  ..+.    .+++.+++.++.... ..+ +|+||.+|.|+.+.
T Consensus       139 ~~~i~vv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l  198 (260)
T 2xtp_A          139 GHTIVLFTHKEDLNGGSLM--DYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKEL  198 (260)
T ss_dssp             GGEEEEEECGGGGTTCCHH--HHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHH
T ss_pred             ccEEEEEEcccccCCccHH--HHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHH
Confidence            35677777 9999853211  1111    234445555442100 112 88999999988654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=90.97  E-value=0.012  Score=41.49  Aligned_cols=14  Identities=36%  Similarity=0.330  Sum_probs=12.3

Q ss_pred             CeEEEEEEcCCCCC
Q psy15201         15 NQLGVVINKLDTVS   28 (97)
Q Consensus        15 k~~Iv~INK~D~v~   28 (97)
                      .++|+++||+|+++
T Consensus       199 ~~~i~v~NK~Dl~~  212 (315)
T 1jwy_B          199 KRTIGVITKLDLMD  212 (315)
T ss_dssp             SSEEEEEECTTSSC
T ss_pred             CcEEEEEcCcccCC
Confidence            47899999999986

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=90.54  E-value=0.044  Score=40.58  Aligned_cols=57  Identities=11%  Similarity=0.072  Sum_probs=31.2

Q ss_pred             CCeEEEEEEcCCCCCC----------------CHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSW----------------SQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~----------------~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~~   70 (97)
                      -.++|++.||+|+.+.                .....++..+.+...+..+.-.  .....++++||.+|.|+.+
T Consensus       268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~  342 (362)
T 1zcb_A          268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL  342 (362)
T ss_dssp             TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence            4589999999997410                0011233333222222221111  2347889999999998854

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=90.34  E-value=0.12  Score=41.20  Aligned_cols=44  Identities=18%  Similarity=0.168  Sum_probs=26.8

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeee
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSG   62 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA   62 (97)
                      ..++ ++|+++||+|+...+   +.++.++++..+   +.. ....++|+|+
T Consensus       127 ~~~~-p~ivviNKiD~~~~~---~~~~~~~l~~~l---~~~-~~~~~~Pi~~  170 (691)
T 1dar_A          127 KYKV-PRIAFANKMDKTGAD---LWLVIRTMQERL---GAR-PVVMQLPIGR  170 (691)
T ss_dssp             HTTC-CEEEEEECTTSTTCC---HHHHHHHHHHTT---CCC-EEECEEEESC
T ss_pred             HcCC-CEEEEEECCCcccCC---HHHHHHHHHHHh---CCC-ccceeccccC
Confidence            3455 578899999998632   444555555544   321 1245688887

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=89.41  E-value=0.25  Score=34.23  Aligned_cols=77  Identities=16%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             CeEEEEEEcCCCCCCC----HHHHHHHHHHHHHHHHH-hCCC-CCCceEEEeeeccCCCCCC--C-CC--CCCCCCcccc
Q psy15201         15 NQLGVVINKLDTVSWS----QDRFQEIVTKLGAFLKQ-AGFR-DSDIEYVPCSGLTGENLTT--P-SQ--VPALTSWYSG   83 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~----~~~~~~i~~~l~~~l~~-~~~~-~~~~~iipiSA~~G~ni~~--~-~~--~~~~~~W~~g   83 (97)
                      .++|+++||+|+.+.+    ++..+++.+.++.+++. .++. .-....+|+++..+.+...  . ..  .+...+|+  
T Consensus       155 ~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~--  232 (270)
T 1h65_A          155 NKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWI--  232 (270)
T ss_dssp             GGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHH--
T ss_pred             cCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcH--
Confidence            4799999999997532    12233344555555543 2221 0011224455444433211  0 10  01236784  


Q ss_pred             CchHHHhccc
Q psy15201         84 PCLLDVIGLS   93 (97)
Q Consensus        84 ~tlle~ld~~   93 (97)
                      +.|++.|+.+
T Consensus       233 ~~Ll~~l~~~  242 (270)
T 1h65_A          233 PHLVQTITEV  242 (270)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4777776543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=88.75  E-value=0.47  Score=36.82  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=23.6

Q ss_pred             ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201          8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL   45 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l   45 (97)
                      .|+..|++ .|++|||||+..   ..+.++.++++..+
T Consensus       147 ~a~~~~lp-~i~fINK~Dr~~---ad~~~~~~~i~~~l  180 (548)
T 3vqt_A          147 VCRMRATP-VMTFVNKMDREA---LHPLDVMADIEQHL  180 (548)
T ss_dssp             HHHHTTCC-EEEEEECTTSCC---CCHHHHHHHHHHHH
T ss_pred             HHHHhCCc-eEEEEecccchh---cchhHhhhhhhhhc
Confidence            35557775 588899999975   34556666676665

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=87.87  E-value=0.2  Score=39.50  Aligned_cols=20  Identities=25%  Similarity=0.252  Sum_probs=15.2

Q ss_pred             ceeccCCCeEEEEEEcCCCCC
Q psy15201          8 KSAVSGVNQLGVVINKLDTVS   28 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~   28 (97)
                      .|...|++. |++|||||+..
T Consensus       114 ~a~~~~lp~-i~~INKmDr~~  133 (638)
T 3j25_A          114 ALRKMGIPT-IFFINKIDQNG  133 (638)
T ss_dssp             HHHHHTCSC-EECCEECCSSS
T ss_pred             HHHHcCCCe-EEEEecccccc
Confidence            355678875 77899999875

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=87.50  E-value=0.46  Score=32.04  Aligned_cols=45  Identities=11%  Similarity=0.204  Sum_probs=24.0

Q ss_pred             CeEEEEEEcCCCCCCC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEeeecc
Q psy15201         15 NQLGVVINKLDTVSWS--QDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLT   64 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~   64 (97)
                      +++|+++||+|+.+..  ++.+....+.++.+++..+.     .++++++..
T Consensus       146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~  192 (239)
T 3lxx_A          146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKA  192 (239)
T ss_dssp             GGEEEEEECGGGC------------CHHHHHHHHHHSS-----SEEECCTTC
T ss_pred             ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCC
Confidence            3799999999987511  11122222356667776653     455665543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=86.37  E-value=0.072  Score=38.67  Aligned_cols=47  Identities=15%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++|+++||+|+++.....        ...++.... +...+++++|+..+.++.+.
T Consensus       205 ~~i~V~nK~Dl~~~~~~~--------~~~~~~~~~-~~~~~~~~v~~~s~~~i~~~  251 (360)
T 3t34_A          205 RTFGVLTKIDLMDKGTDA--------VEILEGRSF-KLKYPWVGVVNRSQADINKN  251 (360)
T ss_dssp             TEEEEEECGGGCCTTCCS--------HHHHTTSSS-CCSSCCEEECCCCHHHHHTT
T ss_pred             CEEEEEeCCccCCCcccH--------HHHHcCccc-cccCCeEEEEECChHHhccC
Confidence            689999999998522111        111221111 12368899999998887654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=84.22  E-value=0.46  Score=36.07  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLK   46 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~   46 (97)
                      -.++|+++||+|+..  .+....++..+..-++
T Consensus       176 ~~~vI~Vi~KtD~Lt--~~E~~~l~~~I~~~L~  206 (427)
T 2qag_B          176 KVNIIPIIAKADAIS--KSELTKFKIKITSELV  206 (427)
T ss_dssp             CSEEEEEESCGGGSC--HHHHHHHHHHHHHHHB
T ss_pred             CCCEEEEEcchhccc--hHHHHHHHHHHHHHHH
Confidence            457999999999884  4555666666665444

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=82.85  E-value=0.56  Score=34.70  Aligned_cols=52  Identities=17%  Similarity=0.026  Sum_probs=33.6

Q ss_pred             cCCCeEEEEEEcCC--CCCC-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         12 SGVNQLGVVINKLD--TVSW-SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        12 lGvk~~Iv~INK~D--~v~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      +--+++|++.||.|  +.+- ...    ..+.++.+.+..+     .+++|+||..+.++.+..
T Consensus       199 lt~KPvi~v~N~~e~d~~~~~~n~----~~~~v~~~a~~~g-----~~vv~iSAk~E~el~eL~  253 (368)
T 2dby_A          199 LTAKPVIYVANVAEEDLPDGRGNP----QVEAVRRKALEEG-----AEVVVVSARLEAELAELS  253 (368)
T ss_dssp             GGGSCEEEEEECCGGGTTTCTTCH----HHHHHHHHHHHHT-----CEEEEECHHHHHHHHTSC
T ss_pred             hhcCCeEEeccccHHhhcccchhh----HHHHHHHHHHHcC-----CeEEEeechhHHHHHHhc
Confidence            44589999999997  3321 012    2344555555444     589999999987776553

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=81.87  E-value=0.61  Score=32.82  Aligned_cols=47  Identities=11%  Similarity=-0.106  Sum_probs=28.3

Q ss_pred             eEEEEEEcC-CCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKL-DTVS-WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~-D~v~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++.|.-||. |+.+ -+.   .++.+.    +.-.... ....|.++||++|+|+.+
T Consensus       164 pLLVlANKqqDlp~Ams~---~EI~e~----L~L~~l~-R~W~Iq~csA~TGeGL~E  212 (227)
T 3l82_B          164 PLLVLSCISQGDVKRMPC---FYLAHE----LHLNLLN-HPWLVQDTEAETLTGFLN  212 (227)
T ss_dssp             CEEEEEEESSTTSCBCCH---HHHHHH----TTGGGGC-SCEEEEEEETTTCTTHHH
T ss_pred             eEEEEeCCCcCccCCCCH---HHHHHH----cCCcCCC-CCEEEEEeECCCCcCHHH
Confidence            677778985 6653 122   222222    2111122 468999999999999865

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=80.97  E-value=1.8  Score=34.46  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFL   45 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l   45 (97)
                      |...|++ .|++|||||+...   .+..+.++++..+
T Consensus       133 a~~~~lp-~i~~iNKiDr~~a---~~~~~~~ei~~~l  165 (709)
T 4fn5_A          133 ANKYGVP-RIVYVNKMDRQGA---NFLRVVEQIKKRL  165 (709)
T ss_dssp             HHHHTCC-EEEEEECSSSTTC---CHHHHHHHHHHHH
T ss_pred             HHHcCCC-eEEEEccccccCc---cHHHHHHHhhhhc
Confidence            4556786 5888999998752   3445556665555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d1f60a3	239	c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N	2e-16
d1zunb3	222	c.37.1.8 (B:16-237) Sulfate adenylate transferase	8e-15
d1jnya3	224	c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N	1e-14
d1r5ba3	245	c.37.1.8 (A:215-459) Eukaryotic peptide chain rele	2e-14
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	1e-11
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	2e-07
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	7e-05

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.9 bits (168), Expect = 2e-16
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 15/90 (16%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV QL V +NK+D+V W + RFQEIV +   F+K+ G+    + +VP SG  G+N+   +
Sbjct: 143 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 202

Query: 73  QVPALTSWY------------SGPCLLDVI 90
                  WY             G  LL+ I
Sbjct: 203 ---TNAPWYKGWEKETKAGVVKGKTLLEAI 229

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

 Score = 64.5 bits (156), Expect = 8e-15
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           G+  + V INK+D   + +  F+ I      F +   F+ + + +VP S L G+N+   S
Sbjct: 141 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 200

Query: 73  QVPALTSWYSGPCLLDVI 90
                + WY+G  L++++
Sbjct: 201 ---ERSPWYAGQSLMEIL 215

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 64.1 bits (155), Expect = 1e-14
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 13  GVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT 70
           G++QL V +NK+D     + + R++EIV ++  F++  GF  + + +VP    +G+N+T 
Sbjct: 140 GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199

Query: 71  PSQVPALTSWYSGPCLLDVI 90
            S       WY+GP L + +
Sbjct: 200 KS---ENMKWYNGPTLEEYL 216

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 63.7 bits (154), Expect = 2e-14
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 13  GVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDS--DIEYVPCSGLTGENL 68
           G+N L VVINK+D  S  WS++R++E V KL  FL++    +S  D++Y+P S  TG+N+
Sbjct: 161 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 220

Query: 69  TTPSQVPALTSWYSGPCLLDVI 90
                  ++  WY GP LL+ +
Sbjct: 221 KDRVD-SSVCPWYQGPSLLEYL 241

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 55.8 bits (134), Expect = 1e-11
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 14  VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQ 73
           V  + V +NK D V  S +  + +  ++   L + G++  +   +  S L       P  
Sbjct: 119 VEHVVVYVNKADAVQDS-EMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE- 176

Query: 74  VPALTSWYSGPCLLDVI 90
                   S   LLD +
Sbjct: 177 ----LGLKSVQKLLDAV 189

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.2 bits (104), Expect = 2e-07
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS 72
           GV  + V +NK+D V    +    +  ++   L Q  F   ++  +  S L        +
Sbjct: 119 GVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRN 177

Query: 73  QVPALTSWYSGPC------LLDVI 90
                T             LLD I
Sbjct: 178 ---PKTRRGENEWVDKIWELLDAI 198

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.2 bits (85), Expect = 7e-05
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 13  GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENL 68
           GV  L +V NK+D VS   +       ++  F K  G    ++  +P S L   N+
Sbjct: 139 GVKNLIIVQNKVDVVSK--EEALSQYRQIKQFTK--GTWAENVPIIPVSALHKINI 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.91
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.82
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.82
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.76
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.59
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.3
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.12
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.05
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.73
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.18
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.15
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.15
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.01
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.98
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.97
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.77
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.66
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.64
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.59
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.59
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.58
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.51
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.47
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.47
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.43
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.39
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.3
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.26
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.18
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.16
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.14
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.1
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.09
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.07
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.02
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.93
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.91
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.87
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.86
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.86
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.8
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.79
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.72
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.7
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.68
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.66
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.66
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.63
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.56
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.48
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.34
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.3
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.24
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.16
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.06
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.05
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.81
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.22
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.18
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.38
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.24
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.48
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.83
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	89.71
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.58
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	86.43
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	81.63
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	80.53

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.91  E-value=1.2e-24  Score=152.00  Aligned_cols=86  Identities=24%  Similarity=0.563  Sum_probs=81.0

Q ss_pred             ceeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchH
Q psy15201          8 KSAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLL   87 (97)
Q Consensus         8 ~~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tll   87 (97)
                      .|+.+|++++|+++||||+++|++++++++.+++..++++.++++.+++||||||++|+|+.+++.+   ++||+|+||+
T Consensus       136 ~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~~s~~---~~wy~g~tl~  212 (222)
T d1zunb3         136 IASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER---SPWYAGQSLM  212 (222)
T ss_dssp             HHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT---CTTCCSCCTT
T ss_pred             HHHHcCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCcCccc---CCCCcCChHH
Confidence            3567999999999999999999999999999999999999999888899999999999999999887   9999999999


Q ss_pred             HHhccccCC
Q psy15201         88 DVIGLSGLS   96 (97)
Q Consensus        88 e~ld~~~~~   96 (97)
                      |+||+++++
T Consensus       213 e~ld~~~i~  221 (222)
T d1zunb3         213 EILETVEIA  221 (222)
T ss_dssp             HHHHHSCCT
T ss_pred             HHHhcCCCC
Confidence            999999875

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=8.2e-21  Score=133.60  Aligned_cols=84  Identities=37%  Similarity=0.726  Sum_probs=77.6

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccc------
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYS------   82 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~------   82 (97)
                      |+.+|++++||+|||||+++|++++++++.+++..++...++++..++++|+||++|+|+.+.+.+   ++||+      
T Consensus       139 ~~~~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~s~~---~~wykg~~~~~  215 (239)
T d1f60a3         139 AFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN---APWYKGWEKET  215 (239)
T ss_dssp             HHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS---CTTCCCEEEEC
T ss_pred             HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceecccc---CccccCccccc
Confidence            567999999999999999999999999999999999999998877799999999999999999877   89995      


Q ss_pred             ------cCchHHHhccccC
Q psy15201         83 ------GPCLLDVIGLSGL   95 (97)
Q Consensus        83 ------g~tlle~ld~~~~   95 (97)
                            ++||+|+||+++.
T Consensus       216 ~~~~~~~~TLlEaLD~I~~  234 (239)
T d1f60a3         216 KAGVVKGKTLLEAIDAIEQ  234 (239)
T ss_dssp             SSSEEEESSHHHHHHTSCC
T ss_pred             ccCccccccHHHHhhCCCC
Confidence                  4899999999864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.82  E-value=1e-20  Score=133.30  Aligned_cols=85  Identities=38%  Similarity=0.801  Sum_probs=71.7

Q ss_pred             eeccCCCeEEEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHh-CCCC-CCceEEEeeeccCCCCCCCCCCCCCCCccccC
Q psy15201          9 SAVSGVNQLGVVINKLDTV--SWSQDRFQEIVTKLGAFLKQA-GFRD-SDIEYVPCSGLTGENLTTPSQVPALTSWYSGP   84 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v--~~~~~~~~~i~~~l~~~l~~~-~~~~-~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~   84 (97)
                      +..+|++++|+++||||++  ++++++++++.++++.+++++ ++.+ ..++||||||++|+|+.++... ..++||+|+
T Consensus       157 ~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s-~~~~wy~G~  235 (245)
T d1r5ba3         157 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS-SVCPWYQGP  235 (245)
T ss_dssp             HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT-TTCSSCCSC
T ss_pred             HHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc-cCCCCCCCc
Confidence            5678999999999999987  588999999999999988876 4432 2479999999999999887432 238999999


Q ss_pred             chHHHhcccc
Q psy15201         85 CLLDVIGLSG   94 (97)
Q Consensus        85 tlle~ld~~~   94 (97)
                      ||+++||++.
T Consensus       236 tl~~~ld~~~  245 (245)
T d1r5ba3         236 SLLEYLDSMT  245 (245)
T ss_dssp             CHHHHHHHCC
T ss_pred             hHHHHHhcCC
Confidence            9999999863

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=7.2e-19  Score=121.66  Aligned_cols=84  Identities=31%  Similarity=0.671  Sum_probs=76.9

Q ss_pred             eeccCCCeEEEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCch
Q psy15201          9 SAVSGVNQLGVVINKLDTVS--WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCL   86 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tl   86 (97)
                      ++.+|++++|+++||||++.  |++.+++.+.+++..++...++...+++++||||..|+|+.+.+.+   ++||+|++|
T Consensus       136 ~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s~~---~~wy~~~~L  212 (224)
T d1jnya3         136 AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNGPTL  212 (224)
T ss_dssp             HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCSCCH
T ss_pred             HHHhCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccccccc---CCCcccccH
Confidence            45689999999999999884  7899999999999999999988878899999999999999998877   999999999


Q ss_pred             HHHhccccC
Q psy15201         87 LDVIGLSGL   95 (97)
Q Consensus        87 le~ld~~~~   95 (97)
                      +++||.++.
T Consensus       213 ~~~Ld~i~~  221 (224)
T d1jnya3         213 EEYLDQLEL  221 (224)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHhcCCC
Confidence            999999875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.59  E-value=3.1e-16  Score=106.97  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=67.1

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCCCCCCCccccCchHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQVPALTSWYSGPCLLD   88 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~~~~~~W~~g~tlle   88 (97)
                      |..+|++++||++||||+++ ++++++.++.+++.+++..++.+...|++|+||++|.+.  ....   ..|+++++|++
T Consensus       114 a~~~~~~~iIv~iNK~D~~~-~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~--~~~~---~~~~~~~~Lld  187 (196)
T d1d2ea3         114 ARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ--RDPE---LGLKSVQKLLD  187 (196)
T ss_dssp             HHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT--CCTT---TTHHHHHHHHH
T ss_pred             HHHhcCCcEEEEEecccccc-cHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccc--cCcc---cccCCHHHHHH
Confidence            45689999999999999997 577999999999999999998888899999999999654  3333   78999999999


Q ss_pred             Hhcc
Q psy15201         89 VIGL   92 (97)
Q Consensus        89 ~ld~   92 (97)
                      +||+
T Consensus       188 ai~~  191 (196)
T d1d2ea3         188 AVDT  191 (196)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9965

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=3.5e-13  Score=91.75  Aligned_cols=83  Identities=20%  Similarity=0.246  Sum_probs=65.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCCCC--CCCCCccc-cCc
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPSQV--PALTSWYS-GPC   85 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~~~--~~~~~W~~-g~t   85 (97)
                      |..+|++++||++||||+++ +++++++++++++.++...+++....+++|+||+.|.+....+..  ....+|+. ..+
T Consensus       115 ~~~~gi~~iiv~iNK~D~~~-~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~~~~~~~~~~~~~~~~~~~~~I~e  193 (204)
T d2c78a3         115 ARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWE  193 (204)
T ss_dssp             HHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHH
T ss_pred             HHHcCCCeEEEEEEecccCC-CHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhhhhhhhcCccccCCcccchhhHHH
Confidence            56689999999999999997 688999999999999999888878899999999999877555433  11133443 356


Q ss_pred             hHHHhcc
Q psy15201         86 LLDVIGL   92 (97)
Q Consensus        86 lle~ld~   92 (97)
                      |++++|.
T Consensus       194 LLdaIde  200 (204)
T d2c78a3         194 LLDAIDE  200 (204)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.12  E-value=1.6e-11  Score=82.76  Aligned_cols=59  Identities=25%  Similarity=0.356  Sum_probs=45.4

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++.+|++++||++||||+++  ..+......++..+++...  ..++|+|||||++|.|++++
T Consensus       135 ~~~~~i~~iIV~vNK~Dl~~--~~~~~~~~~~~~~~l~~~~--~~~~p~ipiSA~~g~nI~~L  193 (205)
T d2qn6a3         135 LGIIGVKNLIIVQNKVDVVS--KEEALSQYRQIKQFTKGTW--AENVPIIPVSALHKINIDSL  193 (205)
T ss_dssp             HHHTTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTST--TTTCCEEECBTTTTBSHHHH
T ss_pred             HHHcCCceeeeccccCCCcc--chHHHHHHHHHHHHhcccc--CCCCeEEEEeCCCCCChHHH
Confidence            45689999999999999996  3444555566666665443  35789999999999999764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.05  E-value=3.6e-11  Score=80.15  Aligned_cols=58  Identities=19%  Similarity=0.350  Sum_probs=45.0

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ++.+|++++|+++||||+++  .....+..+.+..+++...+  +.+|+|||||++|+|+++
T Consensus       127 ~~~~~~~~iiv~inK~D~~d--~~~~~~~~~~~~~~~~~~~~--~~~~iIpiSA~~G~ni~~  184 (195)
T d1kk1a3         127 LQIIGQKNIIIAQNKIELVD--KEKALENYRQIKEFIEGTVA--ENAPIIPISALHGANIDV  184 (195)
T ss_dssp             HHHHTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHH
T ss_pred             HHHhcCccceeeeecccchh--hHHHHHHHHHHHHHhccccC--CCCeEEEEECCCCCCHHH
Confidence            44579999999999999985  45555556667777764433  578999999999999854

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.73  E-value=2.9e-09  Score=69.76  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=40.9

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +.+|++ +|+++||||+++  .+..+...+.++.+++.. +.....+++||||++|+|+.+.
T Consensus       108 ~~~~~p-~iiv~NKiD~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~iv~iSA~~g~gi~eL  165 (179)
T d1wb1a4         108 DHFNIP-IIVVITKSDNAG--TEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVDEL  165 (179)
T ss_dssp             HHTTCC-BCEEEECTTSSC--HHHHHHHHHHHHHHHHHS-SSGGGCCEEECCTTTCTTHHHH
T ss_pred             hhcCCc-ceeccccccccC--HHHHHHHHHHHHHHHHHh-hcCCCCeEEEEEccCCcCHHHH
Confidence            456774 789999999985  455555445555555543 2334679999999999999664

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=2.6e-07  Score=59.61  Aligned_cols=54  Identities=24%  Similarity=0.194  Sum_probs=36.4

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+. ++|+++||+|++...+...+++.+.+...+...    +..+++|+||++|.|+.+
T Consensus       119 ~~~-~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~vSa~~g~gv~~  172 (186)
T d1mkya2         119 RGR-ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI----DYSPLIFTSADKGWNIDR  172 (186)
T ss_dssp             TTC-EEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG----TTSCEEECBTTTTBSHHH
T ss_pred             cCC-ceeeeccchhhhcchhhhhhhHHHHHHHHhccc----CCCeEEEEeCCCCCCHHH
Confidence            443 689999999987533434455444444433322    347999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=7e-07  Score=57.54  Aligned_cols=46  Identities=26%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.+  ++..++    +.+.++.     ...+++++||++|.|+++.
T Consensus       114 ~p~iiv~NK~D~~~--~~~~~~----~~~~~~~-----~~~~~~~iSA~tg~gid~L  159 (180)
T d1udxa2         114 RPSLVALNKVDLLE--EEAVKA----LADALAR-----EGLAVLPVSALTGAGLPAL  159 (180)
T ss_dssp             SCEEEEEECCTTSC--HHHHHH----HHHHHHT-----TTSCEEECCTTTCTTHHHH
T ss_pred             hhhhhhhhhhhhhh--HHHHHH----HHHHHHh-----cCCeEEEEEcCCCCCHHHH
Confidence            57999999999985  333332    2333332     2469999999999999654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.15  E-value=1.4e-07  Score=60.62  Aligned_cols=54  Identities=22%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++ ++|+|+||+|+++..+...+.+.+.+..     .+......++|+||++|.|+.+.
T Consensus       120 ~~~-p~iiv~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vSA~~g~gi~~L  173 (184)
T d2cxxa1         120 LDI-PTIVAVNKLDKIKNVQEVINFLAEKFEV-----PLSEIDKVFIPISAKFGDNIERL  173 (184)
T ss_dssp             TTC-CEEEEEECGGGCSCHHHHHHHHHHHHTC-----CGGGHHHHEEECCTTTCTTHHHH
T ss_pred             cCC-CEEEEEeeeehhhhHHHHHHHHHHHhcc-----cccccCCeEEEEECCCCCCHHHH
Confidence            344 5899999999986433333332222211     11111357899999999998653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.9e-06  Score=53.78  Aligned_cols=53  Identities=11%  Similarity=0.109  Sum_probs=38.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..++++++||+|+++  .....+..+.+++.++..+   ...+++|+||++|.|+++.
T Consensus       127 ~~~~~~v~~k~D~~~--~~~~~~~~~~~~~~l~~~~---~~~~~i~vSA~~g~Gid~L  179 (188)
T d1puia_         127 NIAVLVLLTKADKLA--SGARKAQLNMVREAVLAFN---GDVQVETFSSLKKQGVDKL  179 (188)
T ss_dssp             TCCEEEEEECGGGSC--HHHHHHHHHHHHHHHGGGC---SCEEEEECBTTTTBSHHHH
T ss_pred             cccccchhhhhhccC--HHHHHHHHHHHHHHHHhhC---CCCcEEEEeCCCCCCHHHH
Confidence            346888999999985  4455555556665554433   2479999999999999764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=1.5e-06  Score=56.63  Aligned_cols=55  Identities=15%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +..++ ++++|+||+|+.+  +...++..+.++..+   ... ...+++|+||.+|.|+.+.
T Consensus       131 ~~~~~-piivv~NK~D~~~--~~~~~~~~~~~~~~l---~~~-~~~~~~~~SA~~~~gi~el  185 (195)
T d1svia_         131 KYYGI-PVIVIATKADKIP--KGKWDKHAKVVRQTL---NID-PEDELILFSSETKKGKDEA  185 (195)
T ss_dssp             HHTTC-CEEEEEECGGGSC--GGGHHHHHHHHHHHH---TCC-TTSEEEECCTTTCTTHHHH
T ss_pred             ccccC-cceechhhccccC--HHHHHHHHHHHHHHh---ccc-CCCCEEEEeCCCCCCHHHH
Confidence            33555 5999999999875  333344444444433   332 3579999999999998653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=1.2e-06  Score=56.03  Aligned_cols=48  Identities=29%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++ ++|+|+||+|+.+  +.     ..++...+...++    .+++|+||.+|.|+++.
T Consensus       108 ~~~-pviiv~NK~Dl~~--~~-----~~~~~~~~~~~~~----~~~i~iSAk~g~gid~L  155 (171)
T d1mkya1         108 STV-DTILVANKAENLR--EF-----EREVKPELYSLGF----GEPIPVSAEHNINLDTM  155 (171)
T ss_dssp             HTC-CEEEEEESCCSHH--HH-----HHHTHHHHGGGSS----CSCEECBTTTTBSHHHH
T ss_pred             ccc-cccccchhhhhhh--hh-----hhHHHHHHHhcCC----CCeEEEecCCCCCHHHH
Confidence            344 6899999999863  21     1222222222343    46799999999998653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=1.6e-06  Score=55.95  Aligned_cols=46  Identities=26%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++|+++||+|+.+ +.+..+       .+.+..+   ...+++++||++|.|+.+.
T Consensus       118 kp~ivv~NK~Dl~~-~~~~~~-------~~~~~~~---~~~~v~~iSA~~g~Gi~~L  163 (185)
T d1lnza2         118 RPQIIVANKMDMPE-AAENLE-------AFKEKLT---DDYPVFPISAVTREGLREL  163 (185)
T ss_dssp             SCBCBEEECTTSTT-HHHHHH-------HHHHHCC---SCCCBCCCSSCCSSTTHHH
T ss_pred             CcchhhccccchHh-HHHHHH-------HHHHHhc---cCCcEEEEECCCCCCHHHH
Confidence            57899999999985 222222       2222222   2468999999999999764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.77  E-value=1.4e-05  Score=53.67  Aligned_cols=17  Identities=29%  Similarity=0.677  Sum_probs=14.9

Q ss_pred             CceEEEeeeccCCCCCC
Q psy15201         54 DIEYVPCSGLTGENLTT   70 (97)
Q Consensus        54 ~~~iipiSA~~G~ni~~   70 (97)
                      ..+++|+||++|.|+++
T Consensus       191 ~~~i~pvSa~~G~gid~  207 (227)
T d1g7sa4         191 QVSIIPISAITGEGIPE  207 (227)
T ss_dssp             EEEEEECCTTTCTTHHH
T ss_pred             CCeEEEeeCCCCCCHHH
Confidence            47999999999999865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.73  E-value=1.1e-05  Score=55.47  Aligned_cols=56  Identities=16%  Similarity=0.234  Sum_probs=37.9

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      |...|+++ |+++||+|+++ +++..+.+ +.+....+..++     +++.+||.+|+|+.+..
T Consensus        37 a~~~~i~p-vIvlnK~DL~~-~~~~~~~~-~~~~~~y~~~g~-----~v~~~Sa~~~~gl~~L~   92 (231)
T d1t9ha2          37 VEANDIQP-IICITKMDLIE-DQDTEDTI-QAYAEDYRNIGY-----DVYLTSSKDQDSLADII   92 (231)
T ss_dssp             HHTTTCEE-EEEEECGGGCC-CHHHHHHH-HHHHHHHHHHTC-----CEEECCHHHHTTCTTTG
T ss_pred             HHHcCCCE-EEEEecccccc-cHHHHHHH-HHHHHHHhhccc-----cceeeecCChhHHHHHH
Confidence            34467755 77899999996 34433333 333344455564     89999999999997764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.66  E-value=1.4e-05  Score=51.20  Aligned_cols=51  Identities=27%  Similarity=0.277  Sum_probs=32.5

Q ss_pred             CCCeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSW-SQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~-~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .-.+++++.||+|+.+. +..   +    +...+..........+++++||++|+|+.+
T Consensus       117 ~~~piliv~NK~Dl~~~~~~~---~----i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  168 (182)
T d1moza_         117 QDAALLVFANKQDQPGALSAS---E----VSKELNLVELKDRSWSIVASSAIKGEGITE  168 (182)
T ss_dssp             SSCEEEEEEECTTSTTCCCHH---H----HHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred             CCcceEEEEEeeccccccCHH---H----HHHHHHHHHHhhCCCEEEEEECCCCCCHHH
Confidence            34689999999998741 221   1    222221112223457899999999999865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.64  E-value=1.4e-05  Score=50.68  Aligned_cols=51  Identities=27%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ..+++++.||+|+.+..+  ..++.+    .+..........+++++||++|+|+.+
T Consensus       117 ~~pillv~nK~Dl~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~SA~tg~gv~e  167 (176)
T d1fzqa_         117 CVPVLIFANKQDLLTAAP--ASEIAE----GLNLHTIRDRVWQIQSCSALTGEGVQD  167 (176)
T ss_dssp             TCCEEEEEECTTSTTCCC--HHHHHH----HTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             CCeEEEEEEecccccccc--HHHHHH----HHHHHHHHhcCCEEEEEeCCCCCCHHH
Confidence            357999999999985211  122212    221111222357899999999999865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=6.6e-06  Score=52.73  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -+++|+|+||+|+.+..++.    .   +.+-+..+    ...+++|||++|.|+.+.
T Consensus       115 ~~piilv~NK~Dl~~~~~~~----~---~~~~~~~~----~~~~~~iSA~~~~gi~~L  161 (178)
T d1wf3a1         115 KVPILLVGNKLDAAKYPEEA----M---KAYHELLP----EAEPRMLSALDERQVAEL  161 (178)
T ss_dssp             TSCEEEEEECGGGCSSHHHH----H---HHHHHTST----TSEEEECCTTCHHHHHHH
T ss_pred             chhhhhhhcccccccCHHHH----H---HHHHhhcc----cCceEEEecCCCCCHHHH
Confidence            45799999999998632221    1   12222223    368899999999998653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.59  E-value=2.3e-05  Score=49.40  Aligned_cols=53  Identities=26%  Similarity=0.368  Sum_probs=33.6

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ....+++++.||+|+.....  ..    ++...++.......+.+++++||++|+|+.+
T Consensus       114 ~~~~p~iiv~nK~Dl~~~~~--~~----~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1         114 LRKAGLLIFANKQDVKECMT--VA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             GTTCEEEEEEECTTSTTCCC--HH----HHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ccceEEEEEEEcccccccCc--HH----HHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            34567899999999864211  11    2222222222233468999999999999965

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.58  E-value=2.7e-05  Score=51.26  Aligned_cols=17  Identities=18%  Similarity=0.137  Sum_probs=15.0

Q ss_pred             CceEEEeeeccCCCCCC
Q psy15201         54 DIEYVPCSGLTGENLTT   70 (97)
Q Consensus        54 ~~~iipiSA~~G~ni~~   70 (97)
                      .++++|+||.+|+|+.+
T Consensus       216 ~~~~v~vSa~~geGi~~  232 (244)
T d1yrba1         216 PVRVLYLSAKTREGFED  232 (244)
T ss_dssp             CCCCEECCTTTCTTHHH
T ss_pred             CCcEEEEECCCCCCHHH
Confidence            47999999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.51  E-value=2.7e-05  Score=49.56  Aligned_cols=52  Identities=23%  Similarity=0.203  Sum_probs=32.7

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      --.+++++.||+|+.+.  ....++.++    +..........+++++||.+|+|+.+
T Consensus       112 ~~~piiiv~NK~Dl~~~--~~~~~i~~~----~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_         112 RDAIILIFANKQDLPDA--MKPHEIQEK----LGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             TTCEEEEEEECTTSTTC--CCHHHHHHH----TTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ccceeeeeeeccccccc--ccHHHHHHH----HHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            45689999999998752  111222222    21112333457899999999999854

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=5e-05  Score=47.97  Aligned_cols=50  Identities=26%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..+.|+++||+|.+. +.....   ...+...++.+    ..+++|+||++|.|+.+.
T Consensus       113 ~~~~i~v~~k~d~~~-~~~~~~---~~~~~~~~~~~----~~~~~~vSA~~g~gi~~L  162 (179)
T d1egaa1         113 KAPVILAVNKVDNVQ-EKADLL---PHLQFLASQMN----FLDIVPISAETGLNVDTI  162 (179)
T ss_dssp             SSCEEEEEESTTTCC-CHHHHH---HHHHHHHTTSC----CSEEEECCTTTTTTHHHH
T ss_pred             cCceeeeeeeeeccc-hhhhhh---hHhhhhhhhcC----CCCEEEEeCcCCCCHHHH
Confidence            446899999999886 333222   22333333333    379999999999998654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=1.1e-05  Score=51.27  Aligned_cols=49  Identities=20%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+  +.+. ...++.+.+.+..+    ..+++++||++|.|+.+
T Consensus       113 ~piilv~nK~Dl~~--~~~~-v~~~~~~~~~~~~~----~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_         113 FPFVILGNKIDAEE--SKKI-VSEKSAQELAKSLG----DIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             CCEEEEEECTTSCG--GGCC-SCHHHHHHHHHHTT----SCCEEEEBTTTTBSHHH
T ss_pred             CcEEEEecccchhh--hhcc-hhHHHHHHHHHHcC----CCeEEEEeCCCCcCHHH
Confidence            47899999999874  1110 00133344455544    36899999999999865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.43  E-value=7e-05  Score=46.15  Aligned_cols=55  Identities=20%  Similarity=0.168  Sum_probs=34.6

Q ss_pred             ccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         11 VSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        11 ~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .....+++++.||.|+.+....  .++..+    +..........+++|+||.+|.|+.+.
T Consensus       103 ~~~~~~i~iv~nk~Dl~~~~~~--~~i~~~----~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_         103 ELRKAILVVFANKQDMEQAMTS--SEMANS----LGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             GGTTCEEEEEEECTTSTTCCCH--HHHHHH----HTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             ccccceEEEEEeeccccccccH--HHHHHH----HHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            4566789999999998752111  122221    111112234589999999999999753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.39  E-value=5.1e-05  Score=47.59  Aligned_cols=50  Identities=24%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+++++.||+|+.+..  ...+    ....+..........+++++||++|+|+.+
T Consensus       104 ~p~iiv~nK~Dl~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_         104 ATLLIFANKQDLPGAL--SCNA----IQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             CEEEEEEECTTSTTCC--CHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             CceEEEEecccccccc--CHHH----HHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            5789999999986411  1111    112221111222457999999999999855

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00018  Score=45.62  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=33.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+++++.||+|+.+. .....++         .++.+.+.+..+.    .+++.+||++|.|+.+
T Consensus       107 ~piilvgnK~Dl~~~-~~~~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SAkt~~gi~e  166 (177)
T d1kmqa_         107 VPIILVGNKKDLRND-EHTRRELAKMKQEPVKPEEGRDMANRIGA----FGYMECSAKTKDGVRE  166 (177)
T ss_dssp             SCEEEEEECGGGTTC-HHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHH
T ss_pred             CceEEeeecccccch-hhHHHHHHHhhcccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHH
Confidence            478999999999862 2221111         1234455555443    6999999999999865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00015  Score=46.65  Aligned_cols=51  Identities=24%  Similarity=0.332  Sum_probs=34.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+ +....+..         .++.+.+.++.+.    .+++.+||++|.|+.+
T Consensus       114 ~~~ilvgnK~Dl~~-~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~----~~~~E~SAk~~~gv~e  173 (185)
T d2atxa1         114 VPFLLIGTQIDLRD-DPKTLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKT  173 (185)
T ss_dssp             CCEEEEEECTTSTT-CHHHHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHH
T ss_pred             CCeeEeeecccccc-chhhhhhhhhcccccccHHHHHHHHHHcCC----CEEEEecCCCCcCHHH
Confidence            46899999999986 33332221         2344455555553    6899999999999865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=5.2e-05  Score=47.11  Aligned_cols=47  Identities=32%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +...++++++||+|+.+...  .    +++.   +..+.   ..+++++||++|+|+++
T Consensus       105 ~~~~~~i~~~~k~d~~~~~~--~----~~~~---~~~~~---~~~~~~vSA~~g~gi~~  151 (160)
T d1xzpa2         105 IKNKRYLVVINKVDVVEKIN--E----EEIK---NKLGT---DRHMVKISALKGEGLEK  151 (160)
T ss_dssp             HTTSSEEEEEEECSSCCCCC--H----HHHH---HHHTC---STTEEEEEGGGTCCHHH
T ss_pred             cccccceeeeeeccccchhh--h----HHHH---HHhCC---CCcEEEEECCCCCCHHH
Confidence            34567899999999886211  1    1122   22232   36899999999999865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=9.6e-05  Score=46.86  Aligned_cols=47  Identities=21%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++|+|.||+|+.+. +    ...++++.+.+..+    ..+++++||++|.|+.+.
T Consensus       117 piilVgnK~Dl~~~-~----v~~~~~~~~~~~~~----~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_         117 PFVILGNKIDISER-Q----VSTEEAQAWCRDNG----DYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             CEEEEEECTTCSSC-S----SCHHHHHHHHHHTT----CCCEEECCTTTCTTHHHH
T ss_pred             eEEEeccccchhhc-c----CcHHHHHHHHHHcC----CCeEEEEcCCCCcCHHHH
Confidence            68999999998642 1    11234455555543    368999999999999653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.18  E-value=0.00011  Score=46.07  Aligned_cols=51  Identities=20%  Similarity=0.143  Sum_probs=31.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.+++++.||+|+.+...  ..++.+++    ..........+++++||.+|+|+.+
T Consensus       104 ~~pi~lv~nK~Dl~~~~~--~~~i~~~~----~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1         104 GIPVLVLGNKRDLPGALD--EKELIEKM----NLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             TCCEEEEEECTTSTTCCC--HHHHHHHT----TGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             CCcEEEEEeccccchhhh--HHHHHHHH----HHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            357899999999875211  11222221    1111223457999999999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=1e-05  Score=50.58  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=29.6

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|+|+||+|+.+....            +++.    ...+++++||.+|.|+++.
T Consensus       112 ~~~iilv~NK~Dl~~~~~~------------~~~~----~~~~~~~iSAk~~~gi~~L  153 (161)
T d2gj8a1         112 KLPITVVRNKADITGETLG------------MSEV----NGHALIRLSARTGEGVDVL  153 (161)
T ss_dssp             TCCEEEEEECHHHHCCCCE------------EEEE----TTEEEEECCTTTCTTHHHH
T ss_pred             ccceeeccchhhhhhhHHH------------HHHh----CCCcEEEEECCCCCCHHHH
Confidence            4679999999998652110            1111    2479999999999998653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=5.8e-05  Score=47.51  Aligned_cols=50  Identities=18%  Similarity=0.121  Sum_probs=33.4

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +-.++|++.||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       105 ~~~~iilVgnK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1         105 GDIPTALVQNKIDLLDDSCIK----NEEAEGLAKRLK-----LRFYRTSVKEDLNVSEV  154 (164)
T ss_dssp             CSCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CEEEECBTTTTBSSHHH
T ss_pred             CCceEEEeeccCCcccceeee----ehhhHHHHHHcC-----CEEEEeccCCCcCHHHH
Confidence            345789999999986411101    123444555555     58999999999999653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00014  Score=45.70  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+......     .++++.+.+..+     .+++.+||++|.|+.+.
T Consensus       109 ~piilv~nK~Dl~~~~~~-----~~~~~~~~~~~~-----~~~~e~Sak~g~gi~e~  155 (166)
T d1ctqa_         109 VPMVLVGNKCDLAARTVE-----SRQAQDLARSYG-----IPYIETSAKTRQGVEDA  155 (166)
T ss_dssp             CCEEEEEECTTCSCCCSC-----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred             CeEEEEeccccccccccc-----HHHHHHHHHHhC-----CeEEEEcCCCCcCHHHH
Confidence            469999999998652111     123444555555     47999999999998653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.00013  Score=49.76  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             eccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCCC
Q psy15201         10 AVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTPS   72 (97)
Q Consensus        10 ~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~~   72 (97)
                      ...|++ .++++||+|+++  ++..+.+.+....+    ..   ..+++.+||.+|.++++..
T Consensus        38 ~~~~i~-pvIvlnK~DL~~--~~~~~~~~~~~~~~----~~---~~~v~~vSa~~~~g~~~L~   90 (225)
T d1u0la2          38 EKNELE-TVMVINKMDLYD--EDDLRKVRELEEIY----SG---LYPIVKTSAKTGMGIEELK   90 (225)
T ss_dssp             HHTTCE-EEEEECCGGGCC--HHHHHHHHHHHHHH----TT---TSCEEECCTTTCTTHHHHH
T ss_pred             HHcCCC-EEEEEeCcccCC--HHHHHHHHHhhccc----cc---ceeEEEeccccchhHhhHH
Confidence            346775 577799999985  44444333222222    11   2589999999999987653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00032  Score=49.88  Aligned_cols=52  Identities=17%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCC--CCceEEEeeeccCCCCCCC
Q psy15201         18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRD--SDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~--~~~~iipiSA~~G~ni~~~   71 (97)
                      |+||||.|+..  .........+++..+......+  -..|++++||++|+|+++.
T Consensus       196 i~VvNKaD~~~--~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL  249 (327)
T d2p67a1         196 LIVINKDDGDN--HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEI  249 (327)
T ss_dssp             EEEECCCCTTC--HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHH
T ss_pred             EEEEEeecccc--hHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHH
Confidence            78899999874  4455555566666555433221  1368999999999999764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.07  E-value=0.00027  Score=50.19  Aligned_cols=53  Identities=23%  Similarity=0.194  Sum_probs=36.3

Q ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCCCC
Q psy15201         18 GVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        18 Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~~~   71 (97)
                      |++|||+|+.+ .+.....++.+.+..+......  ....+++.+||++|.|+++.
T Consensus       193 i~vvNKaD~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el  247 (323)
T d2qm8a1         193 MIAVNKADDGD-GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSL  247 (323)
T ss_dssp             EEEEECCSTTC-CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHH
T ss_pred             eeeEecccccc-chHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHH
Confidence            78999999876 4555555555655555322211  12368999999999999764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00023  Score=45.44  Aligned_cols=52  Identities=29%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHH---------HHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIV---------TKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~---------~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|.||+|+.+ .....++..         .+...+.+..+    ..+++.+||++|.|+.+.
T Consensus       110 ~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~E~SAk~~~~V~e~  170 (183)
T d1mh1a_         110 TPIILVGTKLDLRD-DKDTIEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQRGLKTV  170 (183)
T ss_dssp             SCEEEEEECHHHHT-CHHHHHHHHHTTCCCCCHHHHHHHHHHTT----CSEEEECCTTTCTTHHHH
T ss_pred             CcEEEEeecccchh-hhhhhhhhhhccccchhhHHHHHHHHHcC----CceEEEcCCCCCcCHHHH
Confidence            47999999999875 222222211         12233344443    379999999999999653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=7.4e-05  Score=47.30  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+..+-.    .++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       111 ~~~ilvgnK~D~~~~~~v~----~~~~~~~~~~~~-----~~~~~~SAktg~gV~e  157 (171)
T d2ew1a1         111 VITVLVGNKIDLAERREVS----QQRAEEFSEAQD-----MYYLETSAKESDNVEK  157 (171)
T ss_dssp             CEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHH
T ss_pred             ccEEEEEeecccccccchh----hhHHHHHHHhCC-----CEEEEEccCCCCCHHH
Confidence            4688899999976311101    123444555555     4789999999999865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00011  Score=46.37  Aligned_cols=48  Identities=13%  Similarity=0.084  Sum_probs=32.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.+++++.||+|+.+...-    ..++.+.+.+..+     .+++++||.+|.|+.+
T Consensus       109 ~~~iilvgnK~Dl~~~~~v----~~~~~~~~~~~~~-----~~~~e~SAk~~~nV~e  156 (167)
T d1z0ja1         109 SIVVAIAGNKCDLTDVREV----MERDAKDYADSIH-----AIFVETSAKNAININE  156 (167)
T ss_dssp             TSEEEEEEECTTCGGGCCS----CHHHHHHHHHHTT-----CEEEECBTTTTBSHHH
T ss_pred             cceEEEecccchhccccch----hHHHHHHHHHHcC-----CEEEEEecCCCCCHHH
Confidence            4578999999998641111    1233445555544     5899999999999865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.00025  Score=45.18  Aligned_cols=47  Identities=21%  Similarity=0.207  Sum_probs=30.7

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++|++.||+|+.+. +..    .++...+....+    ..+++++||.+|.|+.+.
T Consensus       113 p~ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~----~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_         113 PFVVLGNKIDLENR-QVA----TKRAQAWCYSKN----NIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             CEEEEEECTTSSCC-CSC----HHHHHHHHHHTT----SCCEEECBTTTTBSHHHH
T ss_pred             CEEEEEEeeccccc-chh----HHHHHHHHHHhc----CCeEEEEcCCCCcCHHHH
Confidence            68999999998641 111    122233333322    378999999999998653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.87  E-value=0.00012  Score=46.36  Aligned_cols=47  Identities=26%  Similarity=0.134  Sum_probs=31.8

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ++++|.||+|+.+..+-.    .++.+.+.+..+     .+++++||++|.|+.+.
T Consensus       111 piiivgnK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~g~gv~e~  157 (168)
T d1u8za_         111 PFLLVGNKSDLEDKRQVS----VEEAKNRADQWN-----VNYVETSAKTRANVDKV  157 (168)
T ss_dssp             CEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----CEEEECCTTTCTTHHHH
T ss_pred             cEEEEecccccccccccc----HHHHHHHHHHcC-----CeEEEEcCCCCcCHHHH
Confidence            688999999975311101    233455555555     58999999999999653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00014  Score=45.56  Aligned_cols=48  Identities=19%  Similarity=0.115  Sum_probs=32.5

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||.|+.+..+..    .++...+.+..+     .+++.+||++|.|+.+.
T Consensus       106 ~~iilvgnK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1         106 VIIMLVGNKTDLADKRQVS----IEEGERKAKELN-----VMFIETSAKAGYNVKQL  153 (164)
T ss_dssp             SEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             ceEEEEecccchhhhhhhh----HHHHHHHHHHcC-----CEEEEecCCCCcCHHHH
Confidence            4688999999986421111    233444555444     58999999999999654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00011  Score=44.74  Aligned_cols=54  Identities=19%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             CCeEEEEEEcCCCCCC-CHHHHHHHHHHHHH--HH-HHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSW-SQDRFQEIVTKLGA--FL-KQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~-~~~~~~~i~~~l~~--~l-~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      -.+++++.||+|+... ....   +.+.+..  .. ..........+++++||++|+|+.+
T Consensus       101 ~~~i~i~~~k~d~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e  158 (166)
T d2qtvb1         101 DVPFVILGNKIDAPNAVSEAE---LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE  158 (166)
T ss_dssp             TCCEEEEEECTTSSSCCCHHH---HHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHH
T ss_pred             CceEEEEeccccccccCCHHH---HHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHH
Confidence            3468899999998641 2222   2222210  00 0001112347899999999999865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00074  Score=42.90  Aligned_cols=50  Identities=20%  Similarity=0.213  Sum_probs=33.9

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ....+++++.||.|+.+..+    -..++...+.++.+     .+++++||.+|.|+.+
T Consensus       119 ~~~~~iilv~nK~Dl~~~~~----v~~~e~~~~~~~~~-----~~~~e~Sak~~~~i~e  168 (186)
T d2f7sa1         119 CENPDIVLIGNKADLPDQRE----VNERQARELADKYG-----IPYFETSAATGQNVEK  168 (186)
T ss_dssp             TTCCEEEEEEECTTCGGGCC----SCHHHHHHHHHHTT-----CCEEEEBTTTTBTHHH
T ss_pred             CCCceEEEEeeeccchhhhc----chHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence            44567889999999864111    01233455566555     5899999999999865

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.80  E-value=0.00039  Score=42.37  Aligned_cols=53  Identities=23%  Similarity=0.153  Sum_probs=32.4

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .-..+++++.||.|+.+....  .++..+    ...........+++|+||.+|+|+.+
T Consensus        99 ~~~~~i~~v~~k~d~~~~~~~--~~i~~~----~~~~~~~~~~~~~~~~SAktg~gi~e  151 (160)
T d1r8sa_          99 LRDAVLLVFANKQDLPNAMNA--AEITDK----LGLHSLRHRNWYIQATCATSGDGLYE  151 (160)
T ss_dssp             GTTCEEEEEEECTTSTTCCCH--HHHHHH----TTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred             ccCceEEEEeecccccccccH--HHHHHH----HHHHHHhhCCCEEEEeECCCCCCHHH
Confidence            345678999999998752211  121111    11111222357999999999999865

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00017  Score=45.75  Aligned_cols=47  Identities=19%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .++|++.||+|+.+..+-.    .++.+.+.+..+     .+++.+||.+|.|+.+
T Consensus       112 ~piilvgnK~Dl~~~~~v~----~~~~~~~a~~~~-----~~~~e~Sak~g~~i~~  158 (172)
T d2g3ya1         112 IPIILVGNKSDLVRCREVS----VSEGRACAVVFD-----CKFIETSAAVQHNVKE  158 (172)
T ss_dssp             SCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred             ceEEEEecccccccccccc----HHHHHHHHHHcC-----CeEEEEeCCCCcCHHH
Confidence            4789999999986411101    122333444444     5899999999999865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=5.4e-05  Score=47.71  Aligned_cols=48  Identities=17%  Similarity=0.058  Sum_probs=31.3

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|.||+|+.+..+...    ++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       109 ~piilvgnK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~e~Sak~g~~i~e~  156 (167)
T d1kaoa_         109 VPVILVGNKVDLESEREVSS----SEGRALAEEWG-----CPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             CCEEEEEECGGGGGGCCSCH----HHHHHHHHHHT-----SCEEEECTTCHHHHHHH
T ss_pred             CCEEEEEEccchhhcccchH----HHHHHHHHHcC-----CeEEEECCCCCcCHHHH
Confidence            36899999999864211111    22334444444     58999999999998653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.72  E-value=0.00095  Score=45.66  Aligned_cols=48  Identities=15%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +.-++.|+++||+|+++  .+.    .++...+++..+     ...+++||.++.+..+
T Consensus        40 ~~~Kp~IlVlNK~DLv~--~~~----~~~w~~~f~~~~-----~~~i~isa~~~~~~~~   87 (273)
T d1puja_          40 LKNKPRIMLLNKADKAD--AAV----TQQWKEHFENQG-----IRSLSINSVNGQGLNQ   87 (273)
T ss_dssp             CSSSCEEEEEECGGGSC--HHH----HHHHHHHHHTTT-----CCEEECCTTTCTTGGG
T ss_pred             HcCCCeEEEEECccCCc--hHH----HHHHHHHHHhcC-----CccceeecccCCCccc
Confidence            45689999999999996  322    233444444333     4778999999888753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00028  Score=44.61  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=31.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.......    .++...+.+..+     .+++.+||++|.|+.+.
T Consensus       109 ~piilv~nK~D~~~~~~~~----~~~~~~~a~~~~-----~~~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1         109 MVIMLIGNKSDLESRRDVK----REEGEAFAREHG-----LIFMETSAKTACNVEEA  156 (173)
T ss_dssp             CEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHH
T ss_pred             CeEEEEecCCchhhhhhhH----HHHHHHHHHHcC-----CEEEEecCCCCCCHHHH
Confidence            3789999999965311111    123344444444     58999999999999653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00024  Score=44.86  Aligned_cols=47  Identities=19%  Similarity=0.098  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .+++++.||+|+.+..+  ..  ..+.+.+.+..+     .+++++||.+|.|+.+
T Consensus       106 ~piilvgnK~Dl~~~~~--v~--~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~  152 (168)
T d2gjsa1         106 VPIILVGNKSDLVRSRE--VS--VDEGRACAVVFD-----CKFIETSAALHHNVQA  152 (168)
T ss_dssp             CCEEEEEECTTCGGGCC--SC--HHHHHHHHHHHT-----SEEEECBTTTTBSHHH
T ss_pred             ceEEEeecccchhhhcc--hh--HHHHHHHHHhcC-----CEEEEEeCCCCcCHHH
Confidence            36899999999864111  00  122344444444     5899999999999865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00019  Score=45.08  Aligned_cols=49  Identities=14%  Similarity=-0.021  Sum_probs=31.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+........    ++...+.++..    ..+++.+||++|.|+.+.
T Consensus       109 ~p~ilvgnK~Dl~~~~~~~~----~~~~~~~~~~~----~~~~~e~Sak~g~gv~e~  157 (167)
T d1c1ya_         109 VPMILVGNKCDLEDERVVGK----EQGQNLARQWC----NCAFLESSAKSKINVNEI  157 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCH----HHHHHHHHHTT----SCEEEECBTTTTBSHHHH
T ss_pred             CeEEEEEEecCcccccccch----hHHHHHHHHhC----CCEEEEEcCCCCcCHHHH
Confidence            46899999999864211111    22333444322    368999999999998653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00024  Score=44.62  Aligned_cols=48  Identities=21%  Similarity=0.259  Sum_probs=32.5

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ..+++++.||+|+.+.....    .++.+.+.+..+     .+++.+||++|.|+.+
T Consensus       109 ~~~iilvgnK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~e~Saktg~~v~e  156 (166)
T d1z0fa1         109 NTVIILIGNKADLEAQRDVT----YEEAKQFAEENG-----LLFLEASAKTGENVED  156 (166)
T ss_dssp             TCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHH
T ss_pred             cceEEEEcccccchhhcccH----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence            34688999999975311111    233445555544     5899999999999865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00021  Score=44.97  Aligned_cols=48  Identities=15%  Similarity=0.087  Sum_probs=32.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|+|.||+|+.+..+-.    .++.+.+.+..+     ++++.+||++|.|+.+.
T Consensus       109 ~piilVgnK~Dl~~~~~v~----~~e~~~~~~~~~-----~~~~e~Sak~~~~v~e~  156 (171)
T d2erxa1         109 IPIMLVGNKCDESPSREVQ----SSEAEALARTWK-----CAFMETSAKLNHNVKEL  156 (171)
T ss_dssp             CCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHH
T ss_pred             CcEEEEeeccccccccccc----HHHHHHHHHHcC-----CeEEEEcCCCCcCHHHH
Confidence            4689999999975311101    123444555555     58999999999999654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00024  Score=45.07  Aligned_cols=46  Identities=20%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      +++++.||+|+.+......    +....+.+..     ..+++++||.+|.|+.+
T Consensus       111 piilvgnK~Dl~~~~~~~~----~~~~~~~~~~-----~~~~~e~Sa~~g~~i~e  156 (175)
T d2f9la1         111 VIMLVGNKSDLRHLRAVPT----DEARAFAEKN-----NLSFIETSALDSTNVEE  156 (175)
T ss_dssp             EEEEEEECTTCGGGCCSCH----HHHHHHHHHT-----TCEEEECCTTTCTTHHH
T ss_pred             cEEEEEeeecccccccchH----HHHHHhhccc-----CceEEEEecCCCcCHHH
Confidence            7888999999874111111    1112222322     26999999999999865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.001  Score=42.62  Aligned_cols=52  Identities=17%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHH---------HHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEI---------VTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i---------~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+ +....+++         .++.+.+.+..+    ..+++.+||.+|.|+.+.
T Consensus       108 ~~i~lvgnK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~V~e~  168 (191)
T d2ngra_         108 TPFLLVGTQIDLRD-DPSTIEKLAKNKQKPITPETAEKLARDLK----AVKYVECSALTQKGLKNV  168 (191)
T ss_dssp             CCEEEEEECGGGGG-CHHHHHHHHTTTCCCCCHHHHHHHHHHTT----CSCEEECCTTTCTTHHHH
T ss_pred             CceEEEeccccccc-cchhhhhhhhcccccccHHHHHHHHHHcC----CCeEEEEeCCCCcCHHHH
Confidence            46889999999875 23222221         133444555443    268999999999999653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00039  Score=43.51  Aligned_cols=47  Identities=13%  Similarity=-0.023  Sum_probs=31.2

Q ss_pred             eEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         16 QLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        16 ~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      +++++.||+|+....+-.    .++.+.+.+..+     .+++.+||++|.|+.+.
T Consensus       111 piilvgnK~Dl~~~r~v~----~~~~~~~a~~~~-----~~~~e~Sak~~~~v~~~  157 (167)
T d1xtqa1         111 PIMLVGNKKDLHMERVIS----YEEGKALAESWN-----AAFLESSAKENQTAVDV  157 (167)
T ss_dssp             CEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECCTTCHHHHHHH
T ss_pred             ceeeeccccccccccchh----HHHHHHHHHHcC-----CEEEEEecCCCCCHHHH
Confidence            689999999985311100    123344555555     58999999999998653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00025  Score=44.76  Aligned_cols=49  Identities=20%  Similarity=0.186  Sum_probs=31.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+....+..    .+....+.+..+     ++++.+||.+|.|+.+.
T Consensus       110 ~~piivv~nK~D~~~~~~~~----~~~~~~~~~~~~-----~~~~e~Sak~~~gi~e~  158 (174)
T d2bmea1         110 NIVIILCGNKKDLDADREVT----FLEASRFAQENE-----LMFLETSALTGENVEEA  158 (174)
T ss_dssp             TCEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             ceEEEEEEecccccchhchh----hhHHHHHHHhCC-----CEEEEeeCCCCcCHHHH
Confidence            35899999999975311111    122233444433     68999999999999753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00022  Score=45.21  Aligned_cols=48  Identities=23%  Similarity=0.103  Sum_probs=32.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+..+.    ..++.+.+.+..+     .+++.+||++|.|+.+.
T Consensus       112 ~p~ilvgnK~Dl~~~~~~----~~~~~~~~~~~~~-----~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1         112 FPVVLVGNKADLESQRQV----PRSEASAFGASHH-----VAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             CCEEEEEECGGGGGGCCS----CHHHHHHHHHHTT-----CEEEECBTTTTBSHHHH
T ss_pred             CceEEEEEeechhhcccc----chhhhhHHHHhcC-----CEEEEEeCCCCcCHHHH
Confidence            368999999998631111    1233444555444     58999999999999653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0013  Score=41.05  Aligned_cols=49  Identities=14%  Similarity=0.109  Sum_probs=32.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..+++++.||+|+.+..+-.    .++.+.+.++.+     .+++.+||.+|.|+.+.
T Consensus       108 ~~~~ilvgnK~Dl~~~~~v~----~~e~~~~a~~~~-----~~~~e~Sak~~~~v~e~  156 (167)
T d1z08a1         108 EICLCIVGNKIDLEKERHVS----IQEAESYAESVG-----AKHYHTSAKQNKGIEEL  156 (167)
T ss_dssp             GSEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----CEEEEEBTTTTBSHHHH
T ss_pred             ccceeeeccccccccccccc----hHHHHHHHHHcC-----CeEEEEecCCCcCHHHH
Confidence            34678889999986411101    234455555544     58999999999999763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00051  Score=43.21  Aligned_cols=50  Identities=16%  Similarity=0.066  Sum_probs=33.3

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-.++|++.||+|+.+...-.    .++.+.+.+..+     .+++.+||.+|.|+.+.
T Consensus       109 ~~~p~ilvgnK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~i~e~  158 (171)
T d2erya1         109 DEFPMILIGNKADLDHQRQVT----QEEGQQLARQLK-----VTYMEASAKIRMNVDQA  158 (171)
T ss_dssp             SCCSEEEEEECTTCTTSCSSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHHH
T ss_pred             CCCCEEEEEeccchhhhccch----HHHHHHHHHHcC-----CEEEEEcCCCCcCHHHH
Confidence            345788999999986421111    133445555554     58999999999998653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0002  Score=45.33  Aligned_cols=47  Identities=19%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      -.++|++.||+|+.+....      ++...+.+.     .+.+++++||.+|.|+.+.
T Consensus       107 ~~piilvgnK~Dl~~~~~~------~~~~~~~~~-----~~~~~~e~Sak~~~~v~e~  153 (170)
T d1i2ma_         107 NIPIVLCGNKVDIKDRKVK------AKSIVFHRK-----KNLQYYDISAKSNYNFEKP  153 (170)
T ss_dssp             SCCEEEEEECCCCSCSCCT------TTSHHHHSS-----CSSEEEEEBTTTTBTTTHH
T ss_pred             CCceeeecchhhhhhhhhh------hHHHHHHHH-----cCCEEEEEeCCCCCCHHHH
Confidence            3578999999998752111      111122221     2479999999999999764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.00024  Score=44.65  Aligned_cols=52  Identities=21%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      ...+.+++.||.|+.+....+ .-..++.+.+.+..+     .+++.+||.+|.|+.+
T Consensus       107 ~~~~~~~v~nk~d~~~~~~~~-~v~~~~~~~~~~~~~-----~~~~e~Sak~g~gV~e  158 (170)
T d1ek0a_         107 KDIIIALVGNKIDMLQEGGER-KVAREEGEKLAEEKG-----LLFFETSAKTGENVND  158 (170)
T ss_dssp             TTCEEEEEEECGGGGGSSCCC-CSCHHHHHHHHHHHT-----CEEEECCTTTCTTHHH
T ss_pred             cccceeeeecccccccccchh-hhhHHHHHHHHHHcC-----CEEEEecCCCCcCHHH
Confidence            456789999999975311100 001233445555555     5899999999999965

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.00059  Score=42.41  Aligned_cols=44  Identities=18%  Similarity=-0.014  Sum_probs=28.6

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN   67 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n   67 (97)
                      .+++++.||+|+.+..+    ...++.+.+.+..+     .+++.+||++|.+
T Consensus       110 ~pi~lvgnK~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~e~SAkt~~~  153 (165)
T d1z06a1         110 IPRILVGNKCDLRSAIQ----VPTDLAQKFADTHS-----MPLFETSAKNPND  153 (165)
T ss_dssp             CCEEEEEECTTCGGGCC----SCHHHHHHHHHHTT-----CCEEECCSSSGGG
T ss_pred             CeEEEEeccccchhccc----hhHHHHHHHHHHCC-----CEEEEEecccCCc
Confidence            36899999999864111    11233455666554     4789999998664

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0025  Score=39.78  Aligned_cols=48  Identities=13%  Similarity=0.133  Sum_probs=31.1

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .+++++.||+|+.+..+  ..  .++.+.+.+..+     ++++.+||.+|.|+.+.
T Consensus       112 ~~iilvgnK~Dl~~~~~--v~--~e~~~~~~~~~~-----~~~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_         112 IVIALSGNKADLANKRA--VD--FQEAQSYADDNS-----LLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             CEEEEEEECGGGGGGCC--SC--HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             ceEEeeccccccccccc--cc--HHHHHHHHHhcC-----CEEEEeeCCCCCCHHHH
Confidence            46889999999753111  00  123344444433     68999999999998653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0024  Score=39.95  Aligned_cols=48  Identities=27%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~   70 (97)
                      -.++|++.||+|+.+..+  .  -.++.+.+.+..+     .+++.+||.+|. |+.+
T Consensus       106 ~~piilvgnK~Dl~~~r~--V--~~~e~~~~a~~~~-----~~~~e~Saktg~gnV~e  154 (168)
T d2atva1         106 NVTLILVGNKADLDHSRQ--V--STEEGEKLATELA-----CAFYECSACTGEGNITE  154 (168)
T ss_dssp             CCCEEEEEECGGGGGGCC--S--CHHHHHHHHHHHT-----SEEEECCTTTCTTCHHH
T ss_pred             Ccceeeeccchhhhhhcc--C--cHHHHHHHHHHhC-----CeEEEEccccCCcCHHH
Confidence            357999999999753100  0  0233444555555     589999999997 5754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.06  E-value=0.00059  Score=42.36  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=31.3

Q ss_pred             CCCeEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHHH--------hCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVS-WSQDRFQEIVTKLGAFLKQ--------AGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~-~~~~~~~~i~~~l~~~l~~--------~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      --.+++++.||.|+.. .+...+.   +.+......        ...+....+++|+||++|+|+.+
T Consensus       113 ~~~~~li~~~K~D~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e  176 (186)
T d1f6ba_         113 ANVPILILGNKIDRPEAISEERLR---EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE  176 (186)
T ss_dssp             TTSCEEEEEECTTSTTCCCHHHHH---HHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred             CCCceEEEEeccCccccCCHHHHH---HHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHH
Confidence            3457899999999864 2222222   211110000        00112246899999999999865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.05  E-value=0.001  Score=41.71  Aligned_cols=49  Identities=18%  Similarity=0.106  Sum_probs=31.8

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~   70 (97)
                      .-.+++++.||.|+.+..+-.    .++.+.+.+..+     .+++.+||++|.|+.+
T Consensus       109 ~~~~iivv~nK~D~~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~g~gv~e  157 (169)
T d3raba_         109 DNAQVLLVGNKCDMEDERVVS----SERGRQLADHLG-----FEFFEASAKDNINVKQ  157 (169)
T ss_dssp             SCCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHH
T ss_pred             CcceEEEEEeecccccccccc----hhhhHHHHHHcC-----CEEEEecCCCCcCHHH
Confidence            445788888999976411101    122334445555     4899999999999865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0017  Score=40.72  Aligned_cols=48  Identities=17%  Similarity=0.150  Sum_probs=31.7

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC-CCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE-NLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~-ni~~   70 (97)
                      -.++|++.||+|+.+..+-.    .++.+.+.+..+     .+++.+||++|. |+.+
T Consensus       109 ~~p~ilvgnK~Dl~~~~~v~----~e~~~~~~~~~~-----~~~~e~Sak~~~~nV~~  157 (169)
T d1x1ra1         109 SFPMILVANKVDLMHLRKVT----RDQGKEMATKYN-----IPYIETSAKDPPLNVDK  157 (169)
T ss_dssp             CCCEEEEEECTTCSTTCCSC----HHHHHHHHHHHT-----CCEEEEBCSSSCBSHHH
T ss_pred             CccEEEEecccchhhhceee----hhhHHHHHHHcC-----CEEEEEcCCCCCcCHHH
Confidence            34689999999987521111    133445555555     478999999886 8864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.0018  Score=40.62  Aligned_cols=50  Identities=16%  Similarity=0.082  Sum_probs=27.8

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .-.+++++.||.|+....+...+    +...+.+..+     .+++.+||.+|+|+.++
T Consensus       110 ~~~~iilv~~k~D~~~~~~~~~~----~~~~~~~~~~-----~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1         110 ADVEKMILGNKCDVNDKRQVSKE----RGEKLALDYG-----IKFMETSAKANINVENA  159 (173)
T ss_dssp             TTCEEEEEEEC--CCSCCCSCHH----HHHHHHHHHT-----CEEEECCC---CCHHHH
T ss_pred             CCceEEEEEecccchhhcccHHH----HHHHHHHhcC-----CEEEEEeCCCCCCHHHH
Confidence            34678999999998752221111    2223334444     58999999999999753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0017  Score=41.70  Aligned_cols=48  Identities=17%  Similarity=0.120  Sum_probs=31.0

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      .++|++.||+|+.+...-..    ++...+.+..+     .+++++||++|.|+.+.
T Consensus       112 ~~iilv~nK~D~~~~~~~~~----~~~~~~~~~~~-----~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1         112 VLKLLVGNKCDLKDKRVVEY----DVAKEFADANK-----MPFLETSALDSTNVEDA  159 (194)
T ss_dssp             CEEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----CCEEECCTTTCTTHHHH
T ss_pred             ceEEEEEeccccccccchhH----HHHhhhhhccC-----cceEEEecCcCccHHHH
Confidence            47899999999875221111    22222333323     57899999999999654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0048  Score=38.74  Aligned_cols=49  Identities=14%  Similarity=0.082  Sum_probs=33.3

Q ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         13 GVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ...+++++.||.|.... +-.    .++...+.+..+     .+++.+||.+|.|+.+.
T Consensus       112 ~~~~i~~~~nk~d~~~~-~v~----~~~~~~~~~~~~-----~~~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1         112 NDIVNMLVGNKIDKENR-EVD----RNEGLKFARKHS-----MLFIEASAKTCDGVQCA  160 (177)
T ss_dssp             SCCEEEEEEECTTSSSC-CSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHH
T ss_pred             cceeeEEEeeccccccc-ccc----HHHHHHHHHHCC-----CEEEEEeCCCCCCHHHH
Confidence            34678899999997641 111    233444555544     58999999999999764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0033  Score=39.17  Aligned_cols=49  Identities=20%  Similarity=0.175  Sum_probs=32.3

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ..++|++.||.|..+..+-.    .++...+.+..+     ++++++||++|.|+.+.
T Consensus       112 ~~~iilv~~k~d~~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~g~gi~e~  160 (170)
T d2g6ba1         112 DVALMLLGNKVDSAHERVVK----REDGEKLAKEYG-----LPFMETSAKTGLNVDLA  160 (170)
T ss_dssp             TCEEEEEEECCSTTSCCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHH
T ss_pred             CceEEEEEeeechhhccccc----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHHH
Confidence            45788889999977521111    123344445444     58999999999998653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.22  E-value=0.0091  Score=37.67  Aligned_cols=51  Identities=24%  Similarity=0.233  Sum_probs=31.8

Q ss_pred             CeEEEEEEcCCCCCCCHHHHHH--------HHHHHHHHHHHhCCCCCCceEEEeeeccCCC-CC
Q psy15201         15 NQLGVVINKLDTVSWSQDRFQE--------IVTKLGAFLKQAGFRDSDIEYVPCSGLTGEN-LT   69 (97)
Q Consensus        15 k~~Iv~INK~D~v~~~~~~~~~--------i~~~l~~~l~~~~~~~~~~~iipiSA~~G~n-i~   69 (97)
                      .++|+|.||+|+.+........        ..++...+.++.+.    .+++.+||++|.| +.
T Consensus       107 ~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~----~~y~E~SAk~~~n~i~  166 (179)
T d1m7ba_         107 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVR  166 (179)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECBTTTBHHHHH
T ss_pred             ceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCC----CeEEEEeCCCCCcCHH
Confidence            4789999999987421111110        01334455555543    6899999999986 53

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.012  Score=37.50  Aligned_cols=16  Identities=25%  Similarity=0.181  Sum_probs=13.3

Q ss_pred             CCCeEEEEEEcCCCCC
Q psy15201         13 GVNQLGVVINKLDTVS   28 (97)
Q Consensus        13 Gvk~~Iv~INK~D~v~   28 (97)
                      +..+++|++||+|+.+
T Consensus       107 ~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1         107 NSPSLLIACNKQDIAM  122 (207)
T ss_dssp             TCCEEEEEEECTTSTT
T ss_pred             cCCcEEEEEECcccCC
Confidence            4568999999999975

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.017  Score=35.50  Aligned_cols=50  Identities=24%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             cCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      ....+++++.||.|..+. ...    .++.+.+.+..+     .+++++||.+|.|+.+.
T Consensus       105 ~~~~~~i~~~~k~d~~~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~e~  154 (166)
T d1g16a_         105 NDEAQLLLVGNKSDMETR-VVT----ADQGEALAKELG-----IPFIESSAKNDDNVNEI  154 (166)
T ss_dssp             CTTCEEEEEEECTTCTTC-CSC----HHHHHHHHHHHT-----CCEEECBTTTTBSHHHH
T ss_pred             cCcceeeeecchhhhhhh-hhh----HHHHHHHHHhcC-----CeEEEECCCCCCCHHHH
Confidence            345578889999997651 111    123444455444     58999999999998653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.013  Score=36.99  Aligned_cols=52  Identities=13%  Similarity=0.013  Sum_probs=30.9

Q ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCCCCCCC
Q psy15201         14 VNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGENLTTP   71 (97)
Q Consensus        14 vk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~ni~~~   71 (97)
                      --+++++.||.|+-...+....  .++.+.+.+..    ...+++.+||.+|.|+.+.
T Consensus       106 ~~pi~lV~~k~d~d~~~~~~v~--~~~~~~~~~~~----~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1         106 GLALALVGTQDRISASSPRVVG--DARARALCADM----KRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             CCEEEEEEECTTCCSSSCCCSC--HHHHHHHHHTS----TTEEEEEEBTTTTBTHHHH
T ss_pred             CccEEEEeeecCcchhhhcchh--HHHHHHHHHHh----CCCeEEEeCCCCCcCHHHH
Confidence            3478889998886431111000  12333443332    2479999999999998653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.48  E-value=0.041  Score=37.82  Aligned_cols=46  Identities=17%  Similarity=0.110  Sum_probs=28.6

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeeccCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGLTGE   66 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~~G~   66 (97)
                      |+..+++ .|++|||||+..   ..+.++.+++++.+   +     ..++|+.-.-|.
T Consensus       119 a~~~~lP-~i~fINKmDr~~---ad~~~~l~ei~~~l---~-----~~~vp~~~Pig~  164 (276)
T d2bv3a2         119 AEKYKVP-RIAFANKMDKTG---ADLWLVIRTMQERL---G-----ARPVVMQLPIGR  164 (276)
T ss_dssp             HHTTTCC-EEEEEECTTSTT---CCHHHHHHHHHHTT---C-----CCEEECEEEESC
T ss_pred             HHHcCCC-EEEEEecccccc---cccchhHHHHHHHh---C-----CCeEEEEecccC
Confidence            4556775 688999999864   45566666666544   3     344555544443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.83  E-value=0.24  Score=35.11  Aligned_cols=47  Identities=15%  Similarity=0.114  Sum_probs=32.5

Q ss_pred             CeEEEEEEcCCCCC-----------CCHHHHHHHHHHHHHHHHHhCCCCCCceEEEeeec
Q psy15201         15 NQLGVVINKLDTVS-----------WSQDRFQEIVTKLGAFLKQAGFRDSDIEYVPCSGL   63 (97)
Q Consensus        15 k~~Iv~INK~D~v~-----------~~~~~~~~i~~~l~~~l~~~~~~~~~~~iipiSA~   63 (97)
                      +++++|+||+|...           ..+..++++++.+...++..+.  ...+++++|+.
T Consensus       163 k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~--~~~~vflvS~~  220 (400)
T d1tq4a_         163 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI--AEPPIFLLSNK  220 (400)
T ss_dssp             CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC--SSCCEEECCTT
T ss_pred             CCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC--CCCCEEEecCC
Confidence            58999999999541           1234466777777777776665  34678888865

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.80  E-value=0.13  Score=35.01  Aligned_cols=27  Identities=22%  Similarity=0.167  Sum_probs=16.8

Q ss_pred             eeccCCCeEEEEEEcCCCCCCCHHHHHH
Q psy15201          9 SAVSGVNQLGVVINKLDTVSWSQDRFQE   36 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~~~~~~~~~   36 (97)
                      ++..|++ .+++|||||...+..+.+++
T Consensus       115 ~~~~~~p-~~i~iNk~D~~~~~~~~l~~  141 (267)
T d2dy1a2         115 AERLGLP-RMVVVTKLDKGGDYYALLED  141 (267)
T ss_dssp             HHHTTCC-EEEEEECGGGCCCHHHHHHH
T ss_pred             hhhcccc-cccccccccccccchhhhhh
Confidence            4556775 57789999985433333333

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.71  E-value=0.11  Score=32.47  Aligned_cols=14  Identities=14%  Similarity=0.157  Sum_probs=11.7

Q ss_pred             CeEEEEEEcCCCCC
Q psy15201         15 NQLGVVINKLDTVS   28 (97)
Q Consensus        15 k~~Iv~INK~D~v~   28 (97)
                      .++++++||+|+.+
T Consensus       112 ~piiiv~NK~D~~~  125 (209)
T d1nrjb_         112 IDILIACNKSELFT  125 (209)
T ss_dssp             CCEEEEEECTTSTT
T ss_pred             CCeEEEEEeecccc
Confidence            35889999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.58  E-value=0.04  Score=34.32  Aligned_cols=58  Identities=10%  Similarity=0.110  Sum_probs=31.1

Q ss_pred             cCCCeEEEEEEcCCCCC--------------C--CHHHHHHHHHHHHHHHHHhCCC--CCCceEEEeeeccCCCCC
Q psy15201         12 SGVNQLGVVINKLDTVS--------------W--SQDRFQEIVTKLGAFLKQAGFR--DSDIEYVPCSGLTGENLT   69 (97)
Q Consensus        12 lGvk~~Iv~INK~D~v~--------------~--~~~~~~~i~~~l~~~l~~~~~~--~~~~~iipiSA~~G~ni~   69 (97)
                      ..-.+++++.||+|+.+              +  .....+...+.+....+...-.  .+.+-...+||+++.|+.
T Consensus       109 ~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~  184 (200)
T d1zcba2         109 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR  184 (200)
T ss_dssp             GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred             hcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHH
Confidence            34568999999999642              0  0011233334444444332111  122444568999999884

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.43  E-value=0.43  Score=30.93  Aligned_cols=11  Identities=18%  Similarity=0.434  Sum_probs=9.5

Q ss_pred             EEEEEcCCCCC
Q psy15201         18 GVVINKLDTVS   28 (97)
Q Consensus        18 Iv~INK~D~v~   28 (97)
                      ++++||+|+++
T Consensus       153 ~ivlNK~Dl~~  163 (222)
T d1nija1         153 RILLTKTDVAG  163 (222)
T ss_dssp             EEEEECTTTCS
T ss_pred             ccccccccccc
Confidence            57799999986

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.63  E-value=0.16  Score=35.73  Aligned_cols=57  Identities=21%  Similarity=0.181  Sum_probs=30.4

Q ss_pred             eeccCCCeEEEEEEcCCCCC----C-CH---HHHHHHHHHHHHHHHHh--------CCCCCCceEEEeeeccCC
Q psy15201          9 SAVSGVNQLGVVINKLDTVS----W-SQ---DRFQEIVTKLGAFLKQA--------GFRDSDIEYVPCSGLTGE   66 (97)
Q Consensus         9 ~~~lGvk~~Iv~INK~D~v~----~-~~---~~~~~i~~~l~~~l~~~--------~~~~~~~~iipiSA~~G~   66 (97)
                      |...|+ +.|++|||||+..    . .+   +++..+...++..+...        .+.|..-.++..||..|-
T Consensus       144 a~~~~~-p~i~viNKiDr~~~el~~~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~  216 (341)
T d1n0ua2         144 ALGERI-KPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGW  216 (341)
T ss_dssp             HHHTTC-EEEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTE
T ss_pred             HHHcCC-CeEEEEECcccccccHHhhHHHHHHHHcCccccccceeeecccccccccccCcccCceEecccccCe
Confidence            444666 5688899999541    0 12   23444444444444321        122333456777777765

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.53  E-value=0.18  Score=30.73  Aligned_cols=57  Identities=11%  Similarity=0.106  Sum_probs=30.9

Q ss_pred             CCeEEEEEEcCCCCC---------------CCHHHHHHHHHHHHHHHHHhC-CC-CCCceEEEeeeccCCCCCC
Q psy15201         14 VNQLGVVINKLDTVS---------------WSQDRFQEIVTKLGAFLKQAG-FR-DSDIEYVPCSGLTGENLTT   70 (97)
Q Consensus        14 vk~~Iv~INK~D~v~---------------~~~~~~~~i~~~l~~~l~~~~-~~-~~~~~iipiSA~~G~ni~~   70 (97)
                      ..+++++.||+|+..               ..+....+....+...+.... .. .+...++.+||++|.|+.+
T Consensus       109 ~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~  182 (195)
T d1svsa1         109 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF  182 (195)
T ss_dssp             TSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHH
Confidence            357999999998531               001112222233333222221 11 2346777899999999854