Psyllid ID: psy15210

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKITKN
cHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccEEEEEEEEccccEEccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEEcccccEEEEEEccccccccccccccEEEEccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccc
cHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEccccEEEEEEccccEEEEEEccccccccEEEEEEEEEEcccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEEccccEEEEcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccEcEEEEcHHHHHcccHHHHHHHHHHHHHHHHHHcc
MLKEIEDNTNKLNNKIKEIefhqffndpldfnncfidiqsgaggieAQDWASMLLRQYLRYCERKGFIVEILEksngeitgiKTVTLKIKGkyaygflksesgihrlvrkspfdssnnrhtsfsslfvypeinnlinininpadlridtyrasgaggqhinktdsavrithiptgivvqcqndrsqhrnksEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDLRTNletknikdildgdlDNFIIASLKQHLLNKITKN
MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEileksngeitgiktvtlkikGKYAYGFLKSESGIHRLVRkspfdssnnrHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIvvqcqndrsqHRNKSEAWDMLKSKLYKLKLQYQIKekkkledtkkdikwgyqirsyvldksrikDLRTnletknikdildgdLDNFIIASLKQHLLNKITKN
MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEinnlinininPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMlksklyklklqyqikekkkledtkkdikWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKITKN
**************KIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLV*************SFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN**********AWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLN*****
**KEI**NTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQ*RNKSEAWDMLKSKLYK********************KWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLK**********
MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQ*********SEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKITKN
MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKE*K*********KWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKI***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MxxxxxxxxxxxxxxxxxxxxxQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNKITKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query278 2.2.26 [Sep-21-2011]
A6SXF4367 Peptide chain release fac yes N/A 0.953 0.722 0.728 1e-121
B4EDB1367 Peptide chain release fac yes N/A 0.949 0.719 0.696 1e-115
Q63SP0367 Peptide chain release fac yes N/A 0.964 0.730 0.690 1e-115
A3NX26367 Peptide chain release fac yes N/A 0.964 0.730 0.690 1e-115
Q62J00367 Peptide chain release fac yes N/A 0.964 0.730 0.690 1e-115
Q2L224367 Peptide chain release fac yes N/A 0.964 0.730 0.664 1e-114
Q5NZU2367 Peptide chain release fac yes N/A 0.964 0.730 0.682 1e-113
Q7VZ35367 Peptide chain release fac yes N/A 0.964 0.730 0.664 1e-112
Q7WK44367 Peptide chain release fac yes N/A 0.964 0.730 0.664 1e-112
Q7W8T4367 Peptide chain release fac yes N/A 0.964 0.730 0.664 1e-112
>sp|A6SXF4|RF2_JANMA Peptide chain release factor 2 OS=Janthinobacterium sp. (strain Marseille) GN=prfB PE=3 SV=1 Back     alignment and function desciption
 Score =  434 bits (1115), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 238/265 (89%)

Query: 5   IEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCER 64
           IE++  +L   ++ +EF + F++P+D NNCFIDIQ+GAGG EAQDWASMLLRQYLRYCER
Sbjct: 101 IENDAQELLKLVEGMEFRRMFSNPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCER 160

Query: 65  KGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFS 124
           KGF VEILE+S+GE+ GIKT TLK++G YAYGFL++E+G+HRLVRKSPFDS+N RHTSFS
Sbjct: 161 KGFKVEILEQSDGEVAGIKTATLKVEGDYAYGFLRTETGVHRLVRKSPFDSANGRHTSFS 220

Query: 125 SLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDR 184
           SLFVYPE+++ I I+INPAD+RIDTYRASGAGGQHINKTDSAVR+TH P+GIVVQCQNDR
Sbjct: 221 SLFVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDR 280

Query: 185 SQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDLRT 244
           SQHRNK+EAWDMLK+KL++L+++ ++ E++KLED+K D+ WG+QIRSYVLD+SRIKDLRT
Sbjct: 281 SQHRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRT 340

Query: 245 NLETKNIKDILDGDLDNFIIASLKQ 269
           N ET N K +LDGDLD+FI ASLKQ
Sbjct: 341 NFETGNTKAVLDGDLDDFIAASLKQ 365
Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
Janthinobacterium sp. (strain Marseille) (taxid: 375286)
>sp|B4EDB1|RF2_BURCJ Peptide chain release factor 2 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q63SP0|RF2_BURPS Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain K96243) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|A3NX26|RF2_BURP0 Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain 1106a) GN=prfB PE=3 SV=3 Back     alignment and function description
>sp|Q62J00|RF2_BURMA Peptide chain release factor 2 OS=Burkholderia mallei (strain ATCC 23344) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q2L224|RF2_BORA1 Peptide chain release factor 2 OS=Bordetella avium (strain 197N) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q5NZU2|RF2_AROAE Peptide chain release factor 2 OS=Aromatoleum aromaticum (strain EbN1) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q7VZ35|RF2_BORPE Peptide chain release factor 2 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q7WK44|RF2_BORBR Peptide chain release factor 2 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q7W8T4|RF2_BORPA Peptide chain release factor 2 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=prfB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
340788303299 peptide chain release factor 2 [Collimon 0.964 0.896 0.712 1e-120
152980486367 peptide chain release factor 2 [Janthino 0.953 0.722 0.728 1e-119
134095412325 peptide chain release factor 2 [Herminii 0.953 0.815 0.728 1e-119
300312096337 peptide chain release factor 2 [Herbaspi 0.953 0.786 0.713 1e-119
409406593349 peptide chain release factor 2 [Herbaspi 0.953 0.759 0.716 1e-118
415912112337 Peptide chain release factor 2 [Herbaspi 0.953 0.786 0.709 1e-118
398834200337 peptide chain release factor 2 [Herbaspi 0.964 0.795 0.708 1e-117
237745578349 peptide chain release factor 2 [Oxalobac 0.964 0.767 0.697 1e-117
399018996349 peptide chain release factor 2 [Herbaspi 0.964 0.767 0.701 1e-116
427404010349 peptide chain release factor 2 [Massilia 0.971 0.773 0.688 1e-116
>gi|340788303|ref|YP_004753768.1| peptide chain release factor 2 [Collimonas fungivorans Ter331] gi|340553570|gb|AEK62945.1| peptide chain release factor RF-2 [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 191/268 (71%), Positives = 241/268 (89%)

Query: 2   LKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRY 61
           ++ +E +T  L   ++ +EF + F++P+D NNCFIDIQ+GAGG EAQDWASMLLRQYLRY
Sbjct: 30  IEAVEADTEGLRKLVEGMEFRRMFSNPMDPNNCFIDIQAGAGGTEAQDWASMLLRQYLRY 89

Query: 62  CERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHT 121
           CERKGF V+ILE+S+GE+ GIKT TLK++G YAYGFL++E+G+HRLVRKSPFDS+N RHT
Sbjct: 90  CERKGFKVDILEQSDGEVAGIKTATLKVEGDYAYGFLRTETGVHRLVRKSPFDSANGRHT 149

Query: 122 SFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQ 181
           SFSSLFVYPE+++ I+I++NPAD+R+DTYRASGAGGQHINKTDSAVR+TH+P+GIVVQCQ
Sbjct: 150 SFSSLFVYPEVDDSIDIDVNPADVRVDTYRASGAGGQHINKTDSAVRLTHMPSGIVVQCQ 209

Query: 182 NDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKD 241
           NDRSQHRN++EAWDMLK+KLY+L+L+ ++ E++KLED+K D+ WG+QIRSYVLD+SRIKD
Sbjct: 210 NDRSQHRNRAEAWDMLKAKLYELELRKRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKD 269

Query: 242 LRTNLETKNIKDILDGDLDNFIIASLKQ 269
           LRTN E+ N K ILDGDLD+FI ASLKQ
Sbjct: 270 LRTNFESGNTKAILDGDLDDFIAASLKQ 297

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|152980486|ref|YP_001352951.1| peptide chain release factor 2 [Janthinobacterium sp. Marseille] gi|166223628|sp|A6SXF4.1|RF2_JANMA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|151280563|gb|ABR88973.1| RF-2 peptide chain release factor [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|134095412|ref|YP_001100487.1| peptide chain release factor 2 [Herminiimonas arsenicoxydans] gi|133739315|emb|CAL62364.1| Peptide chain release factor 2 (RF-2) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|300312096|ref|YP_003776188.1| peptide chain release factor 2 [Herbaspirillum seropedicae SmR1] gi|300074881|gb|ADJ64280.1| peptide chain release factor 2 (RF-2) protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|409406593|ref|ZP_11255055.1| peptide chain release factor 2 [Herbaspirillum sp. GW103] gi|386435142|gb|EIJ47967.1| peptide chain release factor 2 [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|415912112|ref|ZP_11553493.1| Peptide chain release factor 2 [Herbaspirillum frisingense GSF30] gi|407762148|gb|EKF71054.1| Peptide chain release factor 2 [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|398834200|ref|ZP_10592061.1| peptide chain release factor 2 [Herbaspirillum sp. YR522] gi|398220562|gb|EJN07008.1| peptide chain release factor 2 [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|237745578|ref|ZP_04576058.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] gi|229376929|gb|EEO27020.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] Back     alignment and taxonomy information
>gi|399018996|ref|ZP_10721146.1| peptide chain release factor 2 [Herbaspirillum sp. CF444] gi|398098645|gb|EJL88927.1| peptide chain release factor 2 [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|427404010|ref|ZP_18894892.1| peptide chain release factor 2 [Massilia timonae CCUG 45783] gi|425717249|gb|EKU80214.1| peptide chain release factor 2 [Massilia timonae CCUG 45783] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
UNIPROTKB|P07012365 prfB [Escherichia coli K-12 (t 0.935 0.712 0.573 4.3e-77
TIGR_CMR|GSU_2278372 GSU_2278 "peptide chain releas 0.956 0.715 0.494 1.3e-66
TIGR_CMR|ECH_0705366 ECH_0705 "peptide chain releas 0.960 0.729 0.490 6e-64
TIGR_CMR|NSE_0604365 NSE_0604 "peptide chain releas 0.967 0.736 0.490 2.6e-63
TIGR_CMR|CJE_1628365 CJE_1628 "peptide chain releas 0.953 0.726 0.476 3.1e-60
TIGR_CMR|APH_0479376 APH_0479 "peptide chain releas 0.996 0.736 0.462 1.3e-59
TIGR_CMR|SPO_2585375 SPO_2585 "peptide chain releas 0.982 0.728 0.458 3.5e-59
UNIPROTKB|Q3Z8Y6362 prfB "Peptide chain release fa 0.964 0.740 0.442 5.7e-59
TIGR_CMR|DET_0570362 DET_0570 "peptide chain releas 0.964 0.740 0.442 5.7e-59
TAIR|locus:2010748482 AT1G56350 [Arabidopsis thalian 0.917 0.529 0.444 8.6e-56
UNIPROTKB|P07012 prfB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 149/260 (57%), Positives = 180/260 (69%)

Query:    12 LNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEI 71
             L  K+ ++EF + F+   D  +C++DIQ+G+GG EAQDWASML R YLR+ E +GF  EI
Sbjct:   106 LEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEI 165

Query:    72 LEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPE 131
             +E+S GE+ GIK+VT+KI G YAYG+L++E+G+HRLVRKSPFDS   RHTSFSS FVYPE
Sbjct:   166 IEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPE 225

Query:   132 XXXXXXXXXXPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNKS 191
                       PADLRID YR SGAGGQH+N+T+SAVRITHIPTGIV QCQNDRSQH+NK 
Sbjct:   226 VDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKD 285

Query:   192 EAWDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGYQIRSYVLDKSRIKDLRTNLETKNI 251
             +A                               WG QIRSYVLD SRIKDLRT +ET+N 
Sbjct:   286 QAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNT 345

Query:   252 KDILDGDLDNFIIASLKQHL 271
             + +LDG LD FI ASLK  L
Sbjct:   346 QAVLDGSLDQFIEASLKAGL 365
GO:0015858 "nucleoside transport" evidence=IMP
GO:0015864 "pyrimidine nucleoside transport" evidence=IMP
GO:0015862 "uridine transport" evidence=IMP
GO:0006412 "translation" evidence=IEA
GO:0016149 "translation release factor activity, codon specific" evidence=IEA;IDA
GO:0006415 "translational termination" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=IEA
TIGR_CMR|GSU_2278 GSU_2278 "peptide chain release factor 2, programmed frameshift" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0705 ECH_0705 "peptide chain release factor 2, programmed frameshift" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0604 NSE_0604 "peptide chain release factor 2, programmed frameshift" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1628 CJE_1628 "peptide chain release factor 2" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0479 APH_0479 "peptide chain release factor 2, programmed frameshift" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2585 SPO_2585 "peptide chain release factor 2" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z8Y6 prfB "Peptide chain release factor 2" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0570 DET_0570 "peptide chain release factor 2, programmed frameshift" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TAIR|locus:2010748 AT1G56350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A1W9H4RF2_ACISJNo assigned EC number0.64920.96400.7302yesN/A
P66025RF2_SHIFLNo assigned EC number0.63740.94240.7178yesN/A
Q6D946RF2_ERWCTNo assigned EC number0.63070.93520.7123yesN/A
B9MBK7RF2_ACIETNo assigned EC number0.64920.96400.7302yesN/A
P66023RF2_ECOL6No assigned EC number0.63740.94240.7178yesN/A
Q5F5H5RF2_NEIG1No assigned EC number0.65540.96040.7275yesN/A
B7LYF5RF2_ECO8ANo assigned EC number0.63740.94240.7178yesN/A
B1LR73RF2_ECOSMNo assigned EC number0.63740.94240.7178yesN/A
B4F0M7RF2_PROMHNo assigned EC number0.62690.93520.7123yesN/A
C6D8Z5RF2_PECCPNo assigned EC number0.62970.94240.7178yesN/A
Q7VZ35RF2_BORPENo assigned EC number0.66410.96400.7302yesN/A
B7N7D5RF2_ECOLUNo assigned EC number0.63740.94240.7178yesN/A
A6SXF4RF2_JANMANo assigned EC number0.72830.95320.7220yesN/A
B7UHU0RF2_ECO27No assigned EC number0.63740.94240.7178yesN/A
C5A0G3RF2_ECOBWNo assigned EC number0.63350.94240.7178yesN/A
Q5E7P9RF2_VIBF1No assigned EC number0.61940.96400.7342yesN/A
C5CUX0RF2_VARPSNo assigned EC number0.63050.96400.7302yesN/A
A7FF38RF2_YERP3No assigned EC number0.63460.93520.7123yesN/A
A1JPL5RF2_YERE8No assigned EC number0.63840.93520.7123yesN/A
B4RQU4RF2_NEIG2No assigned EC number0.65540.96040.7275yesN/A
Q5PJG1RF2_SALPANo assigned EC number0.64120.94240.7178yesN/A
Q9JWV4RF2_NEIMANo assigned EC number0.65540.96040.7275yesN/A
Q666T2RF2_YERPSNo assigned EC number0.63460.93520.7103yesN/A
Q9JXB3RF2_NEIMBNo assigned EC number0.65540.96040.7275yesN/A
B7LPA4RF2_ESCF3No assigned EC number0.63740.94240.7178yesN/A
B7LF76RF2_ECO55No assigned EC number0.63740.94240.7178yesN/A
Q5NZU2RF2_AROAENo assigned EC number0.68280.96400.7302yesN/A
B2U8V1RF2_RALPJNo assigned EC number0.65290.96400.7302yesN/A
Q8ZHK4RF2_YERPENo assigned EC number0.63460.93520.7103yesN/A
Q63SP0RF2_BURPSNo assigned EC number0.69020.96400.7302yesN/A
B5BFK6RF2_SALPKNo assigned EC number0.64120.94240.7178yesN/A
Q7WK44RF2_BORBRNo assigned EC number0.66410.96400.7302yesN/A
B1XEH8RF2_ECODHNo assigned EC number0.63350.94240.7178yesN/A
B1ITB1RF2_ECOLCNo assigned EC number0.63740.94240.7178yesN/A
Q62J00RF2_BURMANo assigned EC number0.69020.96400.7302yesN/A
B7MZI9RF2_ECO81No assigned EC number0.63740.94240.7178yesN/A
A1KWK6RF2_NEIMFNo assigned EC number0.65540.96040.7275yesN/A
B4EDB1RF2_BURCJNo assigned EC number0.69690.94960.7193yesN/A
A8A432RF2_ECOHSNo assigned EC number0.63740.94240.7178yesN/A
A3NX26RF2_BURP0No assigned EC number0.69020.96400.7302yesN/A
B7NW32RF2_ECO7INo assigned EC number0.63740.94240.7178yesN/A
B7MM78RF2_ECO45No assigned EC number0.63740.94240.7178yesN/A
B7J4M2RF2_ACIF2No assigned EC number0.57190.97480.7424yesN/A
B5XUF3RF2_KLEP3No assigned EC number0.63350.94240.7178yesN/A
Q2L224RF2_BORA1No assigned EC number0.66410.96400.7302yesN/A
P0A289RF2_SALTYNo assigned EC number0.64120.94240.7178yesN/A
Q7W8T4RF2_BORPANo assigned EC number0.66410.96400.7302yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 1e-165
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 1e-137
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 1e-125
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 1e-122
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 1e-116
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 1e-104
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 5e-92
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 6e-86
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 2e-83
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 2e-78
pfam00472114 pfam00472, RF-1, RF-1 domain 1e-49
smart00937116 smart00937, PCRF, This domain is found in peptide 4e-41
pfam03462115 pfam03462, PCRF, PCRF domain 2e-40
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 1e-30
PRK08179200 PRK08179, prfH, peptide chain release factor-like 2e-29
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 1e-08
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information 
 Score =  461 bits (1188), Expect = e-165
 Identities = 166/275 (60%), Positives = 201/275 (73%), Gaps = 1/275 (0%)

Query: 1   MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLR 60
            L E E     L  K+  +E  +  +   D NN  + I +GAGG EAQDWASMLLR YLR
Sbjct: 93  TLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLR 152

Query: 61  YCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRH 120
           + ER GF VE+L+ S GE  GIK+ T KIKG YAYG+LKSE+G+HRLVR SPFDS+  RH
Sbjct: 153 WAERHGFKVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRH 212

Query: 121 TSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQC 180
           TSF+S+ VYPE+++ I I INP DLRIDTYR+SGAGGQH+NKTDSAVRITHIPTGIVVQC
Sbjct: 213 TSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQC 272

Query: 181 QNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDK-SRI 239
           QN+RSQH+NK+ A  MLK+KLY+L+L+ +  EK  L+  KK+I WG QIRSYVL     +
Sbjct: 273 QNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWGSQIRSYVLHPYQMV 332

Query: 240 KDLRTNLETKNIKDILDGDLDNFIIASLKQHLLNK 274
           KDLRT  ET N + +LDGDLD FI A L+     K
Sbjct: 333 KDLRTGYETGNTQAVLDGDLDGFIEAYLRWRASQK 367

Length = 367
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 278
PRK08787313 peptide chain release factor 2; Provisional 100.0
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
KOG2726|consensus386 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 100.0
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 99.95
PRK09256138 hypothetical protein; Provisional 99.89
KOG3429|consensus172 99.67
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-91  Score=653.92  Aligned_cols=272  Identities=57%  Similarity=0.959  Sum_probs=262.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210          1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT   80 (278)
Q Consensus         1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~   80 (278)
                      |++|+++++..++..++.++++.||++|+|.++|+|+|+||+||+||++||++||+||++||+++||++++++..+++.+
T Consensus        34 ~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~  113 (313)
T PRK08787         34 TALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVA  113 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210         81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI  160 (278)
Q Consensus        81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V  160 (278)
                      |++||++.|+|++||++|++|+|||||||+|||+++||||||||+|.|+|.+++.+++.|+++||+++|+||||||||||
T Consensus       114 Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ~V  193 (313)
T PRK08787        114 GIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHV  193 (313)
T ss_pred             eeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEEEEecCcCcccccccChhHeEEEEEECCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999997777899999999999999999999999


Q ss_pred             cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCCCccc
Q psy15210        161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK  240 (278)
Q Consensus       161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~rVk  240 (278)
                      |||+|||||+|+||||+|+|+++|||++||+.|+++|+++|++.+.+++..+.+..+..+.+++||++||||||+|++||
T Consensus       194 Nkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~~e~~~~~~~~~~~~k~~i~~g~qIRtY~f~~~~V~  273 (313)
T PRK08787        194 NKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQKRNAEKDALEATKSDIGWGSQIRNYVLDQSRIK  273 (313)
T ss_pred             CCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhCcccccccceeCCCCcce
Confidence            99999999999999999999999999999999999999999999998888877766666788999999999999999999


Q ss_pred             cccccccccCcccccCCCcHHHHHHHHHhhhh
Q psy15210        241 DLRTNLETKNIKDILDGDLDNFIIASLKQHLL  272 (278)
Q Consensus       241 D~R~~~~~~~~~~vl~G~ld~~i~~~~~~~~~  272 (278)
                      |||||++++|+++||+|+||+||++++.|..+
T Consensus       274 DhRtg~~~~~l~~vldG~ld~fI~a~l~~~~~  305 (313)
T PRK08787        274 DLRTGIERSDTQKVLDGDLDEFVEASLKAGLA  305 (313)
T ss_pred             eeccCceEcChhHhhCCChHHHHHHHHHHHHh
Confidence            99999999999999999999999999999654

>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>KOG2726|consensus Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 6e-88
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 3e-87
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 1e-86
2wh1_Y351 Insights Into Translational Termination From The St 4e-57
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 4e-57
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 4e-57
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 4e-57
3f1e_X378 Crystal Structure Of A Translation Termination Comp 5e-57
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 4e-46
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 4e-45
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 4e-45
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 3e-37
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 9e-31
2rsm_A115 Solution Structure And Sirna-Mediated Knockdown Ana 7e-05
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure 
Iteration: 1

 Score =  320 bits (820), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 150/262 (57%), Positives = 182/262 (69%)
Query: 10  NKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIV 69
           + L  K+ ++EF + F+   D  +C++DIQ+G+GG EAQDWASML R YLR+ E +GF  
Sbjct: 104 DALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 163
Query: 70  EILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVY 129
           EI+E+S GE+ GIK+VT+KI G YAYG+L++E+G+HRLVRKSPFDS   RHTSFSS FVY
Sbjct: 164 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVY 223
Query: 130 PEXXXXXXXXXXPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRN 189
           PE          PADLRID YRASGAGGQH+N+T+SAVRITHIPTGIV QCQNDRSQH+N
Sbjct: 224 PEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 283
Query: 190 KSEAWDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGYQIRSYVLDKSRIKDLRTNLETK 249
           K +A                               WG QIRSYVLD SRIKDLRT +ET+
Sbjct: 284 KDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETR 343
Query: 250 NIKDILDGDLDNFIIASLKQHL 271
           N + +LDG LD FI ASLK  L
Sbjct: 344 NTQAVLDGSLDQFIEASLKAGL 365
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 1e-174
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 1e-174
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 4e-87
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 5e-87
2b3t_B360 RF-1, peptide chain release factor 1; translation 6e-86
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 1e-85
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 4e-56
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 1e-31
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 3e-19
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 1e-16
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
 Score =  484 bits (1247), Expect = e-174
 Identities = 123/272 (45%), Positives = 173/272 (63%)

Query: 3   KEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYC 62
           + ++    +   K+ E+      N P    N  + IQ GAGG EA DWA MLLR Y R+ 
Sbjct: 85  EALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFA 144

Query: 63  ERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTS 122
           ER+GF VE+++ + G   GI    + +KG+ AYG L  E+G+HRLVR SPFD+S  RHTS
Sbjct: 145 ERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTS 204

Query: 123 FSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 182
           F+ + V PE++  + + + P +LRID  RASG GGQ +N TDSAVR+ H+PTGI V CQ 
Sbjct: 205 FAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQT 264

Query: 183 DRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIKDL 242
            RSQ +NK  A  +LK++LY+L+ + + +E K L    + I+WG QIRSYVLDK+ +KD 
Sbjct: 265 TRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRSYVLDKNYVKDH 324

Query: 243 RTNLETKNIKDILDGDLDNFIIASLKQHLLNK 274
           RT L   + +++LDGDL + I A L+     +
Sbjct: 325 RTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 356
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.93
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.93
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.92
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
Probab=100.00  E-value=1.2e-93  Score=679.47  Aligned_cols=270  Identities=61%  Similarity=1.028  Sum_probs=263.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210          1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT   80 (278)
Q Consensus         1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~   80 (278)
                      |.++|.+++.++++.++.++++.||+||+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+++.+
T Consensus        95 ~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~  174 (365)
T 1gqe_A           95 TFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVA  174 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210         81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI  160 (278)
Q Consensus        81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V  160 (278)
                      ||++|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|++++.+++.|+++||+++|+||||||||||
T Consensus       175 G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~V  254 (365)
T 1gqe_A          175 GIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHV  254 (365)
T ss_dssp             SEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCST
T ss_pred             ceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999998778999999999999999999999999


Q ss_pred             cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCCCccc
Q psy15210        161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK  240 (278)
Q Consensus       161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~rVk  240 (278)
                      |||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|++++.+++.++.++.+..+.+++||++||||||+|+|||
T Consensus       255 Nkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRtY~f~~~rVk  334 (365)
T 1gqe_A          255 NRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK  334 (365)
T ss_dssp             TSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEEEEEEGGGTEEE
T ss_pred             cCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCeEeEECCCCeee
Confidence            99999999999999999999999999999999999999999999999988888888877889999999999999999999


Q ss_pred             cccccccccCcccccCCCcHHHHHHHHHhh
Q psy15210        241 DLRTNLETKNIKDILDGDLDNFIIASLKQH  270 (278)
Q Consensus       241 D~R~~~~~~~~~~vl~G~ld~~i~~~~~~~  270 (278)
                      |||||++++|+++||+|+||+||++++.|.
T Consensus       335 DhRt~~~~~~l~~vldGdld~~I~a~l~~~  364 (365)
T 1gqe_A          335 DLRTGVETRNTQAVLDGSLDQFIEASLKAG  364 (365)
T ss_dssp             ETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred             ccccCceECCHHHHhCCCHHHHHHHHHHhc
Confidence            999999999999999999999999999874
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 278
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 7e-85
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 2e-63
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 3e-56
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 2e-19
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  256 bits (654), Expect = 7e-85
 Identities = 167/271 (61%), Positives = 212/271 (78%)

Query: 1   MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLR 60
              E     + L  K+ ++EF + F+   D  +C++DIQ+G+GG EAQDWASML R YLR
Sbjct: 92  TFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLR 151

Query: 61  YCERKGFIVEILEKSNGEITGIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRH 120
           + E +GF  EI+E+S GE+ GIK+VT+KI G YAYG+L++E+G+HRLVRKSPFDS   RH
Sbjct: 152 WAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH 211

Query: 121 TSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQC 180
           TSFSS FVYPE+++ I+I INPADLRID YRASGAGGQH+N+T+SAVRITHIPTGIV QC
Sbjct: 212 TSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQC 271

Query: 181 QNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK 240
           QNDRSQH+NK +A   +K+KLY++++Q +  EK+ +ED K DI WG QIRSYVLD SRIK
Sbjct: 272 QNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK 331

Query: 241 DLRTNLETKNIKDILDGDLDNFIIASLKQHL 271
           DLRT +ET+N + +LDG LD FI ASLK  L
Sbjct: 332 DLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.85
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-95  Score=694.02  Aligned_cols=270  Identities=61%  Similarity=1.028  Sum_probs=260.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceEEEEEcCCChHHHHHHHHHHHHHHHHHHhhcCcEEEEeeecCCCcC
Q psy15210          1 MLKEIEDNTNKLNNKIKEIEFHQFFNDPLDFNNCFIDIQSGAGGIEAQDWASMLLRQYLRYCERKGFIVEILEKSNGEIT   80 (278)
Q Consensus         1 m~~e~~~~~~~~~~~l~~~~~~~ll~~~~d~~~~~leI~aG~Gg~Ea~~~~~~L~~mY~~~a~~~g~~~~~v~~~~~~~~   80 (278)
                      |.+|+..++.++++.++.+++..||++|+|.++|+|+|+||+||+||++||++||+||.+||+++||++++++..+++.+
T Consensus        92 l~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e~g  171 (362)
T d1gqea_          92 TFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVA  171 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHHHhhhhhHHHHhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCCeEEEeccccCCcc
Confidence            45788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEeccchhcccccccceeeEeeeCCCCCCCCceeeeeEEEEecccCccccCcCCCCCeeEEEeeecCCCCccc
Q psy15210         81 GIKTVTLKIKGKYAYGFLKSESGIHRLVRKSPFDSSNNRHTSFSSLFVYPEINNLINININPADLRIDTYRASGAGGQHI  160 (278)
Q Consensus        81 g~~sa~~~i~G~~ay~~lk~E~GvHr~~rvs~~~~~~kr~ts~a~V~v~P~~~~~~~~~i~~~dl~~~~~RssGpGGQ~V  160 (278)
                      |+|+|+|.|+|++||++|++|+|||||||+|||+++||||||||+|.|+|.+++++++.|+++||+|+|+||||||||||
T Consensus       172 G~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~v  251 (362)
T d1gqea_         172 GIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHV  251 (362)
T ss_dssp             SEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCST
T ss_pred             ceeEEEEEEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCCccceecChHHeEEEEeecCCCCccch
Confidence            99999999999999999999999999999999999999999999999999987788999999999999999999999999


Q ss_pred             cccCceEEEEEcCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceeeEEecCCCccc
Q psy15210        161 NKTDSAVRITHIPTGIVVQCQNDRSQHRNKSEAWDMLKSKLYKLKLQYQIKEKKKLEDTKKDIKWGYQIRSYVLDKSRIK  240 (278)
Q Consensus       161 Nk~~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~rVk  240 (278)
                      |||+|||||||+||||+|.||++|||++||+.||.+|+++|++.+.+++..+.+..+.++.+++||++||||||+|+|||
T Consensus       252 N~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~~~rv~  331 (362)
T d1gqea_         252 NRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK  331 (362)
T ss_dssp             TSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEEEEEEGGGTEEE
T ss_pred             hhhhceeEEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCcCCccCccCCCCccc
Confidence            99999999999999999999999999999999999999999999988887777766677889999999999999999999


Q ss_pred             cccccccccCcccccCCCcHHHHHHHHHhh
Q psy15210        241 DLRTNLETKNIKDILDGDLDNFIIASLKQH  270 (278)
Q Consensus       241 D~R~~~~~~~~~~vl~G~ld~~i~~~~~~~  270 (278)
                      |||||++++|++.||+|+||+||+++|++.
T Consensus       332 DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~  361 (362)
T d1gqea_         332 DLRTGVETRNTQAVLDGSLDQFIEASLKAG  361 (362)
T ss_dssp             ETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred             ccccCCeeCChhHHhCCCHHHHHHHHHHCC
Confidence            999999999999999999999999999763
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure