Psyllid ID: psy15221

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKMY
Secondary Structure (PSIPRED)
ccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mtiirvkenepFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRsqqlpkkmy
Flexible Loop (DISEMBL)
mtiirvkenepfevairrfkrtiektglltdlrarefyekpttvrkrKLAAAIKRHykrirsqqlpkkmy
Low Complexity Region (SEG)
MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKMY
Disordered region (IsUnstruct)
**********PFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHY*************
Disordered Region (DISOPRED)
*TIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFY********************************
Disordered Region (DISEMBL)
MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKMY
Disordered Region (DISPRO)
*TIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAA***********QQL*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLPKKMY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
A6SV83	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.9	8e-30
A4G2B9	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.9	8e-30
Q62DT5	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.871	5e-28
Q63JF8	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.871	5e-28
Q3JKA9	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.871	5e-28
Q393P8	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.871	5e-28
Q1BLZ1	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.871	5e-28
A1WM72	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.857	7e-28
A9BTN3	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.842	1e-27
Q2T7N1	70	30S ribosomal protein S21	yes	N/A	1.0	1.0	0.857	1e-27

>sp|A6SV83|RS21_JANMA 30S ribosomal protein S21 OS=Janthinobacterium sp. (strain Marseille) GN=rpsU PE=3 SV=1

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IR+KENEPFEVA+RRFKRTIEKTGLLTDLRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRLKENEPFEVAMRRFKRTIEKTGLLTDLRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKK+Y
Sbjct: 61 RSQQLPKKLY 70

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

>sp|A4G2B9|RS21_HERAR 30S ribosomal protein S21 OS=Herminiimonas arsenicoxydans GN=rpsU PE=3 SV=1

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IR+KENEPFEVA+RRFKRTIEKTGLLTDLRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRLKENEPFEVAMRRFKRTIEKTGLLTDLRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKK+Y
Sbjct: 61 RSQQLPKKLY 70

Herminiimonas arsenicoxydans (taxid: 204773)

>sp|Q62DT5|RS21B_BURMA 30S ribosomal protein S21 B OS=Burkholderia mallei (strain ATCC 23344) GN=rpsU2 PE=3 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70

Burkholderia mallei (strain ATCC 23344) (taxid: 243160)

>sp|Q63JF8|RS213_BURPS 30S ribosomal protein S21 3 OS=Burkholderia pseudomallei (strain K96243) GN=rpsU3 PE=3 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70

Burkholderia pseudomallei (strain K96243) (taxid: 272560)

>sp|Q3JKA9|RS213_BURP1 30S ribosomal protein S21 3 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsU3 PE=3 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70

Burkholderia pseudomallei (strain 1710b) (taxid: 320372)

>sp|Q393P8|RS21_BURS3 30S ribosomal protein S21 OS=Burkholderia sp. (strain 383) GN=rpsU PE=3 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQ LPKK+Y
Sbjct: 61 RSQTLPKKLY 70

Burkholderia sp. (strain 383) (taxid: 269483)

>sp|Q1BLZ1|RS211_BURCA 30S ribosomal protein S21 1 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsU1 PE=3 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQ LPKK+Y
Sbjct: 61 RSQTLPKKLY 70

Burkholderia cenocepacia (strain AU 1054) (taxid: 331271)

>sp|A1WM72|RS21_VEREI 30S ribosomal protein S21 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rpsU PE=3 SV=1

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 64/70 (91%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT  RKRK AAA+KRHYKR+
Sbjct: 1  MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRHYKRV 60

Query: 61 RSQQLPKKMY 70
          RS QLPKKMY
Sbjct: 61 RSMQLPKKMY 70

Verminephrobacter eiseniae (strain EF01-2) (taxid: 391735)

>sp|A9BTN3|RS21_DELAS 30S ribosomal protein S21 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rpsU PE=3 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IRVKENEP+EVA+RRFKRTIEK GLLTDLRAREFYEKPT+ RKRK AAA+KRHYKR+
Sbjct: 1  MTTIRVKENEPYEVALRRFKRTIEKLGLLTDLRAREFYEKPTSERKRKKAAAVKRHYKRV 60

Query: 61 RSQQLPKKMY 70
          RS QLPKK+Y
Sbjct: 61 RSMQLPKKLY 70

Delftia acidovorans (strain DSM 14801 / SPH-1) (taxid: 398578)

>sp|Q2T7N1|RS212_BURTA 30S ribosomal protein S21 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsU2 PE=3 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 64/70 (91%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          R Q LPKK+Y
Sbjct: 61 RGQMLPKKLY 70

Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) (taxid: 271848)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
398836335	70	ribosomal protein S21 [Herbaspirillum sp	1.0	1.0	0.914	2e-28
134093710	70	30S ribosomal protein S21 [Herminiimonas	1.0	1.0	0.9	3e-28
237746703	70	small subunit ribosomal protein S21 [Oxa	1.0	1.0	0.9	5e-28
300310200	70	30S ribosomal protein S21 [Herbaspirillu	1.0	1.0	0.9	6e-28
340786218	70	30S ribosomal protein S21 [Collimonas fu	1.0	1.0	0.885	1e-27
329906285	70	SSU ribosomal protein S21p [Oxalobactera	1.0	1.0	0.871	4e-27
53716437	70	30S ribosomal protein S21 [Burkholderia	1.0	1.0	0.871	2e-26
78063054	70	30S ribosomal protein S21 [Burkholderia	1.0	1.0	0.871	2e-26
302877606	70	30S ribosomal protein S21 [Gallionella c	1.0	1.0	0.828	3e-26
121609940	70	30S ribosomal protein S21 [Verminephroba	1.0	1.0	0.857	3e-26

>gi|398836335|ref|ZP_10593672.1| ribosomal protein S21 [Herbaspirillum sp. YR522] gi|398211969|gb|EJM98580.1| ribosomal protein S21 [Herbaspirillum sp. YR522]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/70 (91%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IRVKENEPFEVA+RRFKRTIEKTGLLT+LRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKKMY
Sbjct: 61 RSQQLPKKMY 70

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134093710|ref|YP_001098785.1| 30S ribosomal protein S21 [Herminiimonas arsenicoxydans] gi|152983162|ref|YP_001352180.1| 30S ribosomal protein S21 [Janthinobacterium sp. Marseille] gi|166224034|sp|A4G2B9.1|RS21_HERAR RecName: Full=30S ribosomal protein S21 gi|166224035|sp|A6SV83.1|RS21_JANMA RecName: Full=30S ribosomal protein S21 gi|133737613|emb|CAL60656.1| 30S ribosomal subunit protein S21 [Herminiimonas arsenicoxydans] gi|151283239|gb|ABR91649.1| small subunit ribosomal protein S21 [Janthinobacterium sp. Marseille]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IR+KENEPFEVA+RRFKRTIEKTGLLTDLRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRLKENEPFEVAMRRFKRTIEKTGLLTDLRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKK+Y
Sbjct: 61 RSQQLPKKLY 70

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237746703|ref|ZP_04577183.1| small subunit ribosomal protein S21 [Oxalobacter formigenes HOxBLS] gi|237748839|ref|ZP_04579319.1| small subunit ribosomal protein S21 [Oxalobacter formigenes OXCC13] gi|229378054|gb|EEO28145.1| small subunit ribosomal protein S21 [Oxalobacter formigenes HOxBLS] gi|229380201|gb|EEO30292.1| small subunit ribosomal protein S21 [Oxalobacter formigenes OXCC13]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IR+KENEPFEVA+RRFKRTIEKTGLLT+LRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRLKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKKMY
Sbjct: 61 RSQQLPKKMY 70

Source: Oxalobacter formigenes HOxBLS

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300310200|ref|YP_003774292.1| 30S ribosomal protein S21 [Herbaspirillum seropedicae SmR1] gi|409404647|ref|ZP_11253126.1| 30S ribosomal protein S21 [Herbaspirillum sp. GW103] gi|300072985|gb|ADJ62384.1| 30S ribosomal subunit S21 protein [Herbaspirillum seropedicae SmR1] gi|386436166|gb|EIJ48989.1| 30S ribosomal protein S21 [Herbaspirillum sp. GW103]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IRVKENEPFEVA+RRFKRTIEKTGLLT+LRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKK+Y
Sbjct: 61 RSQQLPKKLY 70

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340786218|ref|YP_004751683.1| 30S ribosomal protein S21 [Collimonas fungivorans Ter331] gi|399017718|ref|ZP_10719907.1| ribosomal protein S21 [Herbaspirillum sp. CF444] gi|427400729|ref|ZP_18891967.1| 30S ribosomal protein S21 [Massilia timonae CCUG 45783] gi|340551485|gb|AEK60860.1| SSU ribosomal protein S21p [Collimonas fungivorans Ter331] gi|398102485|gb|EJL92665.1| ribosomal protein S21 [Herbaspirillum sp. CF444] gi|425720242|gb|EKU83165.1| 30S ribosomal protein S21 [Massilia timonae CCUG 45783]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IR+KENEPFEVA+RRFKRTIEKTGLLT+LRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRLKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKK+Y
Sbjct: 61 RSQQLPKKLY 70

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329906285|ref|ZP_08274381.1| SSU ribosomal protein S21p [Oxalobacteraceae bacterium IMCC9480] gi|395763827|ref|ZP_10444496.1| 30S ribosomal protein S21 [Janthinobacterium lividum PAMC 25724] gi|445499117|ref|ZP_21465972.1| 30S ribosomal protein S21 [Janthinobacterium sp. HH01] gi|327547305|gb|EGF32144.1| SSU ribosomal protein S21p [Oxalobacteraceae bacterium IMCC9480] gi|444789112|gb|ELX10660.1| 30S ribosomal protein S21 [Janthinobacterium sp. HH01]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 67/70 (95%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IR+KENEPFEVA+RRFKRTIEKTGLLT+LRAREFYEKPT  RKRKLAAA+KRHYKRI
Sbjct: 1  MTTIRLKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQQLPKK++
Sbjct: 61 RSQQLPKKLF 70

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|53716437|ref|YP_105143.1| 30S ribosomal protein S21 [Burkholderia mallei ATCC 23344] gi|53722779|ref|YP_111764.1| 30S ribosomal protein S21 [Burkholderia pseudomallei K96243] gi|67643218|ref|ZP_00441966.1| 30S ribosomal protein S21 [Burkholderia mallei GB8 horse 4] gi|76817923|ref|YP_335994.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1710b] gi|121596528|ref|YP_991112.1| 30S ribosomal protein S21 [Burkholderia mallei SAVP1] gi|126443122|ref|YP_001063522.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 668] gi|126445629|ref|YP_001077573.1| 30S ribosomal protein S21 [Burkholderia mallei NCTC 10247] gi|126456199|ref|YP_001076419.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1106a] gi|134278696|ref|ZP_01765410.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 305] gi|161521352|ref|YP_001584779.1| 30S ribosomal protein S21 [Burkholderia multivorans ATCC 17616] gi|167000274|ref|ZP_02266093.1| 30S ribosomal protein S21 [Burkholderia mallei PRL-20] gi|167566506|ref|ZP_02359422.1| ribosomal protein S21 [Burkholderia oklahomensis EO147] gi|167573587|ref|ZP_02366461.1| ribosomal protein S21 [Burkholderia oklahomensis C6786] gi|167724586|ref|ZP_02407822.1| ribosomal protein S21 [Burkholderia pseudomallei DM98] gi|167743536|ref|ZP_02416310.1| ribosomal protein S21 [Burkholderia pseudomallei 14] gi|167820725|ref|ZP_02452405.1| ribosomal protein S21 [Burkholderia pseudomallei 91] gi|167829084|ref|ZP_02460555.1| ribosomal protein S21 [Burkholderia pseudomallei 9] gi|167842194|ref|ZP_02468878.1| ribosomal protein S21 [Burkholderia thailandensis MSMB43] gi|167850561|ref|ZP_02476069.1| ribosomal protein S21 [Burkholderia pseudomallei B7210] gi|167899154|ref|ZP_02486555.1| ribosomal protein S21 [Burkholderia pseudomallei 7894] gi|167907497|ref|ZP_02494702.1| ribosomal protein S21 [Burkholderia pseudomallei NCTC 13177] gi|167915836|ref|ZP_02502927.1| ribosomal protein S21 [Burkholderia pseudomallei 112] gi|167923675|ref|ZP_02510766.1| ribosomal protein S21 [Burkholderia pseudomallei BCC215] gi|189352481|ref|YP_001948108.1| 30S ribosomal protein S21 [Burkholderia multivorans ATCC 17616] gi|217422668|ref|ZP_03454171.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 576] gi|221197054|ref|ZP_03570101.1| 30S ribosomal protein S21 [Burkholderia multivorans CGD2M] gi|221203726|ref|ZP_03576744.1| 30S ribosomal protein S21 [Burkholderia multivorans CGD2] gi|221212352|ref|ZP_03585329.1| 30S ribosomal protein S21 [Burkholderia multivorans CGD1] gi|226195854|ref|ZP_03791441.1| 30S ribosomal protein S21 [Burkholderia pseudomallei Pakistan 9] gi|237510061|ref|ZP_04522776.1| ribosomal protein S21 [Burkholderia pseudomallei MSHR346] gi|242312910|ref|ZP_04811927.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1106b] gi|254177192|ref|ZP_04883848.1| 30S ribosomal protein S21 [Burkholderia mallei ATCC 10399] gi|254184928|ref|ZP_04891517.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1655] gi|254186157|ref|ZP_04892675.1| 30S ribosomal protein S21 [Burkholderia pseudomallei Pasteur 52237] gi|254194250|ref|ZP_04900682.1| 30S ribosomal protein S21 [Burkholderia pseudomallei S13] gi|254203081|ref|ZP_04909443.1| 30S ribosomal protein S21 [Burkholderia mallei FMH] gi|254208414|ref|ZP_04914763.1| 30S ribosomal protein S21 [Burkholderia mallei JHU] gi|254253606|ref|ZP_04946923.1| Ribosomal protein S21 [Burkholderia dolosa AUO158] gi|254265310|ref|ZP_04956175.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1710a] gi|254301210|ref|ZP_04968654.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 406e] gi|254359400|ref|ZP_04975672.1| 30S ribosomal protein S21 [Burkholderia mallei 2002721280] gi|386865567|ref|YP_006278515.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1026b] gi|403523634|ref|YP_006659203.1| 30S ribosomal protein S21 [Burkholderia pseudomallei BPC006] gi|416995854|ref|ZP_11939113.1| 30S ribosomal protein S21 [Burkholderia sp. TJI49] gi|418397010|ref|ZP_12970760.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 354a] gi|418536788|ref|ZP_13102457.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1026a] gi|418544099|ref|ZP_13109411.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1258a] gi|418550940|ref|ZP_13115887.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1258b] gi|418556607|ref|ZP_13121231.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 354e] gi|421468321|ref|ZP_15916873.1| ribosomal protein S21 [Burkholderia multivorans ATCC BAA-247] gi|421476928|ref|ZP_15924781.1| ribosomal protein S21 [Burkholderia multivorans CF2] gi|55976309|sp|Q62DT5.1|RS21B_BURMA RecName: Full=30S ribosomal protein S21 B gi|81689982|sp|Q63JF8.1|RS213_BURPS RecName: Full=30S ribosomal protein S21 3 gi|119367226|sp|Q3JKA9.1|RS213_BURP1 RecName: Full=30S ribosomal protein S21 3 gi|52213193|emb|CAH39233.1| 30S ribosomal protein S21 [Burkholderia pseudomallei K96243] gi|52422407|gb|AAU45977.1| ribosomal protein S21 [Burkholderia mallei ATCC 23344] gi|76582396|gb|ABA51870.1| ribosomal protein S21 [Burkholderia pseudomallei 1710b] gi|121224326|gb|ABM47857.1| 30S ribosomal protein S21 [Burkholderia mallei SAVP1] gi|124898251|gb|EAY70094.1| Ribosomal protein S21 [Burkholderia dolosa AUO158] gi|126222613|gb|ABN86118.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 668] gi|126229967|gb|ABN93380.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1106a] gi|126238483|gb|ABO01595.1| 30S ribosomal protein S21 [Burkholderia mallei NCTC 10247] gi|134250480|gb|EBA50560.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 305] gi|147746126|gb|EDK53204.1| 30S ribosomal protein S21 [Burkholderia mallei FMH] gi|147751101|gb|EDK58169.1| 30S ribosomal protein S21 [Burkholderia mallei JHU] gi|148028587|gb|EDK86547.1| 30S ribosomal protein S21 [Burkholderia mallei 2002721280] gi|157811005|gb|EDO88175.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 406e] gi|157933843|gb|EDO89513.1| 30S ribosomal protein S21 [Burkholderia pseudomallei Pasteur 52237] gi|160345402|gb|ABX18487.1| ribosomal protein S21 [Burkholderia multivorans ATCC 17616] gi|160698232|gb|EDP88202.1| 30S ribosomal protein S21 [Burkholderia mallei ATCC 10399] gi|169651001|gb|EDS83694.1| 30S ribosomal protein S21 [Burkholderia pseudomallei S13] gi|184215520|gb|EDU12501.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1655] gi|189336503|dbj|BAG45572.1| small subunit ribosomal protein S21 [Burkholderia multivorans ATCC 17616] gi|217394899|gb|EEC34918.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 576] gi|221167451|gb|EED99920.1| 30S ribosomal protein S21 [Burkholderia multivorans CGD1] gi|221175892|gb|EEE08321.1| 30S ribosomal protein S21 [Burkholderia multivorans CGD2] gi|221183608|gb|EEE16008.1| 30S ribosomal protein S21 [Burkholderia multivorans CGD2M] gi|225932339|gb|EEH28339.1| 30S ribosomal protein S21 [Burkholderia pseudomallei Pakistan 9] gi|235002266|gb|EEP51690.1| ribosomal protein S21 [Burkholderia pseudomallei MSHR346] gi|238524503|gb|EEP87936.1| 30S ribosomal protein S21 [Burkholderia mallei GB8 horse 4] gi|242136149|gb|EES22552.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1106b] gi|243063762|gb|EES45948.1| 30S ribosomal protein S21 [Burkholderia mallei PRL-20] gi|254216312|gb|EET05697.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1710a] gi|325518125|gb|EGC97911.1| 30S ribosomal protein S21 [Burkholderia sp. TJI49] gi|385350371|gb|EIF56915.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1258b] gi|385350768|gb|EIF57290.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1258a] gi|385351680|gb|EIF58146.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1026a] gi|385366772|gb|EIF72374.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 354e] gi|385369574|gb|EIF74889.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 354a] gi|385662695|gb|AFI70117.1| 30S ribosomal protein S21 [Burkholderia pseudomallei 1026b] gi|400227243|gb|EJO57250.1| ribosomal protein S21 [Burkholderia multivorans CF2] gi|400232176|gb|EJO61812.1| ribosomal protein S21 [Burkholderia multivorans ATCC BAA-247] gi|403078701|gb|AFR20280.1| 30S ribosomal protein S21 [Burkholderia pseudomallei BPC006]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQ LPKK+Y
Sbjct: 61 RSQMLPKKLY 70

Source: Burkholderia mallei ATCC 23344

Species: Burkholderia mallei

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|78063054|ref|YP_372962.1| 30S ribosomal protein S21 [Burkholderia sp. 383] gi|107026826|ref|YP_624337.1| 30S ribosomal protein S21 [Burkholderia cenocepacia AU 1054] gi|116691980|ref|YP_837513.1| 30S ribosomal protein S21 [Burkholderia cenocepacia HI2424] gi|134292970|ref|YP_001116706.1| 30S ribosomal protein S21 [Burkholderia vietnamiensis G4] gi|170736026|ref|YP_001777286.1| 30S ribosomal protein S21 [Burkholderia cenocepacia MC0-3] gi|206562770|ref|YP_002233533.1| 30S ribosomal protein S21 [Burkholderia cenocepacia J2315] gi|254248775|ref|ZP_04942095.1| 30S ribosomal protein S21 [Burkholderia cenocepacia PC184] gi|330821207|ref|YP_004350069.1| 30S ribosomal protein S21 [Burkholderia gladioli BSR3] gi|387904762|ref|YP_006335100.1| 30S ribosomal protein s21 [Burkholderia sp. KJ006] gi|421866281|ref|ZP_16297953.1| SSU ribosomal protein S21p [Burkholderia cenocepacia H111] gi|444363471|ref|ZP_21163897.1| ribosomal protein S21 [Burkholderia cenocepacia BC7] gi|444369205|ref|ZP_21168974.1| ribosomal protein S21 [Burkholderia cenocepacia K56-2Valvano] gi|119367202|sp|Q1BLZ1.1|RS211_BURCA RecName: Full=30S ribosomal protein S21 1 gi|119367241|sp|Q393P8.1|RS21_BURS3 RecName: Full=30S ribosomal protein S21 gi|77970939|gb|ABB12318.1| SSU ribosomal protein S21P [Burkholderia sp. 383] gi|105896200|gb|ABF79364.1| SSU ribosomal protein S21P [Burkholderia cenocepacia AU 1054] gi|116649980|gb|ABK10620.1| SSU ribosomal protein S21P [Burkholderia cenocepacia HI2424] gi|124875276|gb|EAY65266.1| 30S ribosomal protein S21 [Burkholderia cenocepacia PC184] gi|134136127|gb|ABO57241.1| SSU ribosomal protein S21P [Burkholderia vietnamiensis G4] gi|169818214|gb|ACA92796.1| ribosomal protein S21 [Burkholderia cenocepacia MC0-3] gi|198038810|emb|CAR54772.1| 30S ribosomal protein S21 2 [Burkholderia cenocepacia J2315] gi|327373202|gb|AEA64557.1| 30S ribosomal protein S21 [Burkholderia gladioli BSR3] gi|358073864|emb|CCE48831.1| SSU ribosomal protein S21p [Burkholderia cenocepacia H111] gi|387579654|gb|AFJ88369.1| SSU ribosomal protein S21p [Burkholderia sp. KJ006] gi|443594945|gb|ELT63559.1| ribosomal protein S21 [Burkholderia cenocepacia BC7] gi|443599501|gb|ELT67774.1| ribosomal protein S21 [Burkholderia cenocepacia K56-2Valvano]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MTIIRVKENEPFEVA+RRFKRTIEK GLLT+LRAREFYEKPT  RKRK AAA+KRHYKRI
Sbjct: 1  MTIIRVKENEPFEVAMRRFKRTIEKNGLLTELRAREFYEKPTAERKRKKAAAVKRHYKRI 60

Query: 61 RSQQLPKKMY 70
          RSQ LPKK+Y
Sbjct: 61 RSQTLPKKLY 70

Source: Burkholderia sp. 383

Species: Burkholderia sp. 383

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|302877606|ref|YP_003846170.1| 30S ribosomal protein S21 [Gallionella capsiferriformans ES-2] gi|302580395|gb|ADL54406.1| ribosomal protein S21 [Gallionella capsiferriformans ES-2] gi|406998936|gb|EKE16756.1| hypothetical protein ACD_10C00819G0001 [uncultured bacterium]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 65/70 (92%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT +RVKENEPFEVA+RRFKR++EKTGLLTDLRAREFYEKPT  RKRKLAAA+KRHYKR+
Sbjct: 1  MTTVRVKENEPFEVAMRRFKRSVEKTGLLTDLRAREFYEKPTAERKRKLAAAVKRHYKRL 60

Query: 61 RSQQLPKKMY 70
          RSQ LP K+Y
Sbjct: 61 RSQTLPPKLY 70

Source: Gallionella capsiferriformans ES-2

Species: Gallionella capsiferriformans

Genus: Gallionella

Family: Gallionellaceae

Order: Gallionellales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|121609940|ref|YP_997747.1| 30S ribosomal protein S21 [Verminephrobacter eiseniae EF01-2] gi|241767025|ref|ZP_04764811.1| ribosomal protein S21 [Acidovorax delafieldii 2AN] gi|351729237|ref|ZP_08946928.1| 30S ribosomal protein S21 [Acidovorax radicis N35] gi|365097198|ref|ZP_09331443.1| 30S ribosomal protein S21 [Acidovorax sp. NO-1] gi|166225205|sp|A1WM72.1|RS21_VEREI RecName: Full=30S ribosomal protein S21 gi|121554580|gb|ABM58729.1| SSU ribosomal protein S21P [Verminephrobacter eiseniae EF01-2] gi|241362448|gb|EER58384.1| ribosomal protein S21 [Acidovorax delafieldii 2AN] gi|363413492|gb|EHL20688.1| 30S ribosomal protein S21 [Acidovorax sp. NO-1]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 64/70 (91%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          MT IRVKENEPF+VA+RRFKRTIEK GLLTDLRAREFYEKPT  RKRK AAA+KRHYKR+
Sbjct: 1  MTTIRVKENEPFDVALRRFKRTIEKLGLLTDLRAREFYEKPTAERKRKKAAAVKRHYKRV 60

Query: 61 RSQQLPKKMY 70
          RS QLPKKMY
Sbjct: 61 RSMQLPKKMY 70

Source: Verminephrobacter eiseniae EF01-2

Species: Verminephrobacter eiseniae

Genus: Verminephrobacter

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TIGR_CMR|SO_1288	71	SO_1288 "ribosomal protein S21	1.0	0.985	0.591	7.5e-18
UNIPROTKB|P68679	71	rpsU [Escherichia coli K-12 (t	1.0	0.985	0.549	2.5e-17
UNIPROTKB|P66532	71	rpsU "30S ribosomal protein S2	1.0	0.985	0.549	5.3e-17
TIGR_CMR|VC_0520	71	VC_0520 "ribosomal protein S21	1.0	0.985	0.549	5.3e-17
TIGR_CMR|CPS_4337	71	CPS_4337 "ribosomal protein S2	1.0	0.985	0.549	2.9e-16
TIGR_CMR|CBU_1593	74	CBU_1593 "ribosomal protein S2	0.914	0.864	0.546	3.8e-14
TIGR_CMR|GSU_3093	65	GSU_3093 "ribosomal protein S2	0.828	0.892	0.5	4.5e-11
TIGR_CMR|BA_4534	57	BA_4534 "ribosomal protein S21	0.742	0.912	0.557	1.2e-10
TIGR_CMR|CHY_0421	59	CHY_0421 "ribosomal protein S2	0.785	0.932	0.472	3.6e-09
TIGR_CMR|CJE_0419	70	CJE_0419 "ribosomal protein S2	0.814	0.814	0.385	1.8e-07

TIGR_CMR|SO_1288 SO_1288 "ribosomal protein S21" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 42/71 (59%), Positives = 56/71 (78%)

Query:     1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
             M II+V+ENEPF+VA+RRFKR+ EK G+L D+RAREFYEKPTT RKR  AAA+KR  K++
Sbjct:     1 MPIIKVRENEPFDVALRRFKRSCEKAGILADVRAREFYEKPTTARKRAKAAAVKRLAKKL 60

Query:    61 RSQQLPK-KMY 70
               +   + ++Y
Sbjct:    61 SRENARRVRLY 71

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P68679 rpsU [Escherichia coli K-12 (taxid:83333)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 39/71 (54%), Positives = 56/71 (78%)

Query:     1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
             M +I+V+ENEPF+VA+RRFKR+ EK G+L ++R REFYEKPTT RKR  A+A+KRH K++
Sbjct:     1 MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL 60

Query:    61 RSQQLPK-KMY 70
               +   + ++Y
Sbjct:    61 ARENARRTRLY 71

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P66532 rpsU "30S ribosomal protein S21" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/71 (54%), Positives = 56/71 (78%)

Query:     1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
             M +++V+ENEPF+VA+RRFKR+ EK G+L+++R RE YEKPTTVRKR  AAA KRH K++
Sbjct:     1 MPVVKVRENEPFDVALRRFKRSCEKAGILSEVRRREHYEKPTTVRKRAKAAAQKRHAKKL 60

Query:    61 RSQQLPK-KMY 70
               +   + ++Y
Sbjct:    61 ARENARRVRLY 71

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0520 VC_0520 "ribosomal protein S21" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/71 (54%), Positives = 56/71 (78%)

Query:     1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
             M +++V+ENEPF+VA+RRFKR+ EK G+L+++R RE YEKPTTVRKR  AAA KRH K++
Sbjct:     1 MPVVKVRENEPFDVALRRFKRSCEKAGILSEVRRREHYEKPTTVRKRAKAAAQKRHAKKL 60

Query:    61 RSQQLPK-KMY 70
               +   + ++Y
Sbjct:    61 ARENARRVRLY 71

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_4337 CPS_4337 "ribosomal protein S21" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/71 (54%), Positives = 55/71 (77%)

Query:     1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
             M +I+V+ENEPF+VA+RRFKR+ EK G+L+++R RE YEKPT  RKRK AAA+KR  K++
Sbjct:     1 MPVIKVRENEPFDVALRRFKRSCEKAGILSEVRRRESYEKPTWERKRKKAAAVKRAAKKV 60

Query:    61 RSQQLPK-KMY 70
               +   + +MY
Sbjct:    61 SRENARRVRMY 71

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|CBU_1593 CBU_1593 "ribosomal protein S21" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 35/64 (54%), Positives = 49/64 (76%)

Query:     1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
             M +I V +N  F+VA+RRFKR  EK G+L+ LR  E+YEKPT+ RKRK AAA+KR+ K++
Sbjct:     1 MPMIDVPDNNAFDVAMRRFKRACEKAGILSKLRQIEYYEKPTSKRKRKRAAAVKRYAKKL 60

Query:    61 RSQQ 64
             + +Q
Sbjct:    61 QKEQ 64

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|GSU_3093 GSU_3093 "ribosomal protein S21" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query:     4 IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIR 61
             ++VKE E FE+A+++FK+  EK G+L+++R RE YEKP+  RK+K  AA KR  K+ R
Sbjct:     4 VKVKETESFELALKKFKKQCEKAGILSEVRKREHYEKPSIKRKKKAIAARKRAMKKQR 61

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_4534 BA_4534 "ribosomal protein S21" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query:     6 VKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHY 57
             V++NE  E A+RRFKR++ KTG L + R REFYEKP+  RK+K  AA KR +
Sbjct:     6 VRKNESLEDALRRFKRSVSKTGTLAEARKREFYEKPSVKRKKKSEAARKRKF 57

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_0421 CHY_0421 "ribosomal protein S21" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query:     1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKR 55
             M  +RV +NE  + A+RRFKR+ +K GL+ ++R RE YEKP+  RK+K  A  K+
Sbjct:     1 MAEVRVGKNESLDSALRRFKRSCQKAGLMAEMRKREHYEKPSVRRKKKAQARNKK 55

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CJE_0419 CJE_0419 "ribosomal protein S21" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 22/57 (38%), Positives = 40/57 (70%)

Query:     4 IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
             I+V  NE F+ A R+FK+ +++  ++T++RAR F+E  T +RK++  +A K+  KR+
Sbjct:     4 IKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEIRKKQKISARKKMLKRL 60

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1W9S4	RS21_ACISJ	No assigned EC number	0.8428	1.0	1.0	yes	N/A
Q5P262	RS21_AROAE	No assigned EC number	0.8142	1.0	1.0	yes	N/A
P70943	RS211_BURPS	No assigned EC number	0.7	1.0	1.0	no	N/A
C1DC39	RS21_LARHH	No assigned EC number	0.8142	1.0	1.0	yes	N/A
Q127U4	RS21_POLSJ	No assigned EC number	0.8142	1.0	1.0	yes	N/A
P66518	RS21_NEIMA	No assigned EC number	0.8	1.0	1.0	yes	N/A
P66519	RS21_NEIMB	No assigned EC number	0.8	1.0	1.0	yes	N/A
Q62DT5	RS21B_BURMA	No assigned EC number	0.8714	1.0	1.0	yes	N/A
Q1LK40	RS212_RALME	No assigned EC number	0.7857	1.0	1.0	yes	N/A
A2SF60	RS21_METPP	No assigned EC number	0.8142	1.0	1.0	yes	N/A
Q0AJ90	RS21_NITEC	No assigned EC number	0.7857	1.0	1.0	yes	N/A
Q3SGB2	RS21_THIDA	No assigned EC number	0.7714	1.0	1.0	yes	N/A
Q3JKA9	RS213_BURP1	No assigned EC number	0.8714	1.0	1.0	yes	N/A
Q13RW7	RS212_BURXL	No assigned EC number	0.8	1.0	1.0	yes	N/A
B4RRF0	RS21_NEIG2	No assigned EC number	0.8	1.0	1.0	yes	N/A
A9M105	RS21_NEIM0	No assigned EC number	0.8	1.0	1.0	yes	N/A
A1KW26	RS21_NEIMF	No assigned EC number	0.8	1.0	1.0	yes	N/A
Q7VWM3	RS21_BORPE	No assigned EC number	0.8	1.0	1.0	yes	N/A
B1XVZ1	RS21_POLNS	No assigned EC number	0.8285	1.0	1.0	yes	N/A
Q13SW3	RS211_BURXL	No assigned EC number	0.7	1.0	1.0	no	N/A
B1XZ34	RS21_LEPCP	No assigned EC number	0.8285	1.0	1.0	yes	N/A
Q9WW25	RS21A_BURMA	No assigned EC number	0.7	1.0	1.0	no	N/A
A1TNY6	RS21_ACIAC	No assigned EC number	0.8428	1.0	1.0	yes	N/A
Q2KYB0	RS21_BORA1	No assigned EC number	0.8142	1.0	1.0	yes	N/A
Q393P8	RS21_BURS3	No assigned EC number	0.8714	1.0	1.0	yes	N/A
A9IK87	RS21_BORPD	No assigned EC number	0.8	1.0	1.0	yes	N/A
Q1BLZ1	RS211_BURCA	No assigned EC number	0.8714	1.0	1.0	yes	N/A
A4SZK0	RS21_POLSQ	No assigned EC number	0.8285	1.0	1.0	yes	N/A
A1VM24	RS21_POLNA	No assigned EC number	0.8142	1.0	1.0	yes	N/A
Q2Y7B7	RS21_NITMU	No assigned EC number	0.8285	1.0	1.0	yes	N/A
Q2T7N1	RS212_BURTA	No assigned EC number	0.8571	1.0	1.0	yes	N/A
C5CTG9	RS21_VARPS	No assigned EC number	0.8428	1.0	1.0	yes	N/A
Q63JF8	RS213_BURPS	No assigned EC number	0.8714	1.0	1.0	yes	N/A
Q2STR0	RS211_BURTA	No assigned EC number	0.7	1.0	1.0	no	N/A
A9BTN3	RS21_DELAS	No assigned EC number	0.8428	1.0	1.0	yes	N/A
A1KAI5	RS21_AZOSB	No assigned EC number	0.8	1.0	1.0	yes	N/A
Q7W6Q9	RS21_BORPA	No assigned EC number	0.8	1.0	1.0	yes	N/A
B9MC79	RS21_ACIET	No assigned EC number	0.8428	1.0	1.0	yes	N/A
A2S6T3	RS21_BURM9	No assigned EC number	0.7	1.0	1.0	yes	N/A
Q47IP5	RS21_DECAR	No assigned EC number	0.8	1.0	1.0	yes	N/A
Q21UF7	RS21_RHOFD	No assigned EC number	0.8428	1.0	1.0	yes	N/A
A4G2B9	RS21_HERAR	No assigned EC number	0.9	1.0	1.0	yes	N/A
Q1GYU5	RS21_METFK	No assigned EC number	0.7857	1.0	1.0	yes	N/A
A1WM72	RS21_VEREI	No assigned EC number	0.8571	1.0	1.0	yes	N/A
Q7WHP3	RS21_BORBR	No assigned EC number	0.8	1.0	1.0	yes	N/A
Q3JY47	RS211_BURP1	No assigned EC number	0.7	1.0	1.0	no	N/A
Q82XN1	RS21_NITEU	No assigned EC number	0.7857	1.0	1.0	yes	N/A
Q5F506	RS21_NEIG1	No assigned EC number	0.8	1.0	1.0	yes	N/A
Q7NRL5	RS21_CHRVO	No assigned EC number	0.8285	1.0	1.0	yes	N/A
A6SV83	RS21_JANMA	No assigned EC number	0.9	1.0	1.0	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
PRK00270	64	PRK00270, rpsU, 30S ribosomal protein S21; Reviewe	7e-17
COG0828	67	COG0828, RpsU, Ribosomal protein S21 [Translation,	2e-12
pfam01165	53	pfam01165, Ribosomal_S21, Ribosomal protein S21	2e-11
TIGR00030	58	TIGR00030, S21p, ribosomal protein S21	3e-10

>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed

 Score = 66.8 bits (164), Expect = 7e-17
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          M  ++V+ENE  + A+RRFKR +EK G+L +LR REFYEKP+  RKRK AAA KR  K++
Sbjct: 1  MPQVKVRENESIDKALRRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKL 60

Query: 61 RSQQ 64
            ++
Sbjct: 61 AREE 64

Length = 64

>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]

 Score = 55.4 bits (134), Expect = 2e-12
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          M  ++V+ENEP + A+RRFKR +EK G+L +++ REFYEKP+  RKRK AAA KR +KR+
Sbjct: 1  MPQVKVRENEPLDKALRRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRL 60

Query: 61 RSQQ 64
          R +Q
Sbjct: 61 RKEQ 64

Length = 67

>gnl|CDD|201634 pfam01165, Ribosomal_S21, Ribosomal protein S21

 Score = 52.5 bits (127), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 4  IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIK 54
          ++VKENE  E A+RRFKR +EK G+L +LR R FYEKP+  RKRK   A +
Sbjct: 3  VKVKENENIERALRRFKRKVEKNGILRELRRRRFYEKPSEKRKRKKREARR 53

Length = 53

>gnl|CDD|129141 TIGR00030, S21p, ribosomal protein S21

 Score = 49.6 bits (119), Expect = 3e-10
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 2  TIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKR 59
            ++VKE E  + A+RRFKR +EK G+L +L+ R +YEKP+  R+RK  AA KR  K+
Sbjct: 1  PTVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58

This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
PRK00270	64	rpsU 30S ribosomal protein S21; Reviewed	99.93
COG0828	67	RpsU Ribosomal protein S21 [Translation, ribosomal	99.93
TIGR00030	58	S21p ribosomal protein S21. This model describes b	99.92
PF01165	57	Ribosomal_S21: Ribosomal protein S21; InterPro: IP	99.73

>PRK00270 rpsU 30S ribosomal protein S21; Reviewed

Probab=99.93  E-value=9.6e-26  Score=134.91  Aligned_cols=62  Identities=55%  Similarity=0.872  Sum_probs=59.0

Q ss_pred             CcEeeccCCCcHHHHHHHHHHHHHhhchHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHh
Q psy15221          1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRS   62 (70)
Q Consensus         1 M~~V~V~~~E~ie~Alrrfkr~~~k~Gil~e~rrrr~yeKPs~krkrk~~ea~rR~rk~~r~   62 (70)
                      |++|.|++|||||.||++|+++|+++|||.|+++++||||||++++++..+|.++.+++.+.
T Consensus         1 M~~V~V~~~e~ie~Alrrfkr~~~k~gil~e~r~r~~yekPs~krkrk~~~a~rr~~k~~~~   62 (64)
T PRK00270          1 MPQVKVRENESIDKALRRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAR   62 (64)
T ss_pred             CCeeEeCCCChHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999999999998875543

>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.4e-25  Score=134.75  Aligned_cols=66  Identities=55%  Similarity=0.926  Sum_probs=63.4

Q ss_pred             CcEeeccCCCcHHHHHHHHHHHHHhhchHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15221          1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQLP   66 (70)
Q Consensus         1 M~~V~V~~~E~ie~Alrrfkr~~~k~Gil~e~rrrr~yeKPs~krkrk~~ea~rR~rk~~r~~~~~   66 (70)
                      |++|.|++|||||.||++||++|+++|||.|++.++|||+||++++++..+|.++..+++++.++.
T Consensus         1 M~~v~V~ene~~d~ALrrFKr~~~k~gil~e~k~r~~yEkPs~krkrK~a~a~kr~~k~~~k~~~~   66 (67)
T COG0828           1 MPQVKVRENEPLDKALRRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQR   66 (67)
T ss_pred             CCeeeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999887653

>TIGR00030 S21p ribosomal protein S21

Probab=99.92  E-value=3.4e-25  Score=130.40  Aligned_cols=57  Identities=49%  Similarity=0.812  Sum_probs=54.8

Q ss_pred             cEeeccCCCcHHHHHHHHHHHHHhhchHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Q psy15221          2 TIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYK   58 (70)
Q Consensus         2 ~~V~V~~~E~ie~Alrrfkr~~~k~Gil~e~rrrr~yeKPs~krkrk~~ea~rR~rk   58 (70)
                      ++|.|++|||||+||++|+++|+++||++|+++++||||||++++++..+|++++++
T Consensus         1 ~~V~V~~~e~ie~alrrfkr~~~~~gil~e~r~r~~yeKPs~krkrk~~~a~rr~~k   57 (58)
T TIGR00030         1 PTVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRK   57 (58)
T ss_pred             CeeEeCCCCcHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999999998764

This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.

>PF01165 Ribosomal_S21: Ribosomal protein S21; InterPro: IPR001911 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.73  E-value=8.6e-22  Score=114.36  Aligned_cols=57  Identities=44%  Similarity=0.832  Sum_probs=50.8

Q ss_pred             cEeeccCCCcHHHHHHHHHHHHHhhchHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Q psy15221          2 TIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYK   58 (70)
Q Consensus         2 ~~V~V~~~E~ie~Alrrfkr~~~k~Gil~e~rrrr~yeKPs~krkrk~~ea~rR~rk   58 (70)
                      ++|.|.+|||||.||++|+++|+++||+.+++.++|||+||++++++..++.++..+
T Consensus         1 v~V~V~~~~~~e~Alrr~~r~~~~~gi~~~~r~r~~yekps~kRkrk~~~~~rr~~k   57 (57)
T PF01165_consen    1 VTVKVRDGEDVERALRRFKRKVRRNGILKELRKRRFYEKPSEKRKRKRSERWRRRFK   57 (57)
T ss_dssp             ---EEESSSSSSSSSGTTCCTSSTTHHHTTTSSSB-SSSCCCCTTHCCCCCTHHHHH
T ss_pred             CeeecCCCCCHHHHHHHHHHHHHHcChHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999999999999999999999999999888754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryote ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S21 contains 55-70 amino acid residues, and has only been found in eubacteria to date, though it has been reported that plant chloroplasts and mammalian mitochondria contain ribosomal subunit protein S21. Experimental evidence has revealed that S21 is well exposed on the surface of the Escherichia coli ribosome [], and is one of the 'split proteins': these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2VHO_U 3J18_U 2AVY_U 3OFO_U 3OFP_U 2WWL_U 3J0X_X 3IZV_Y 3ORA_U 3IZW_Y ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
2avy_U	71	Crystal Structure Of The Bacterial Ribosome From Es		2e-17
2i2p_U	70	Crystal Structure Of Ribosome With Messenger Rna An		8e-17
3fih_U	51	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		3e-14

>pdb|2AVY|U Chain U, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 71

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 51/60 (85%)
Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          M +I+V+ENEPF+VA+RRFKR+ EK G+L ++R REFYEKPTT RKR  A+A+KRH K++
Sbjct: 1  MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL 60

>pdb|2I2P|U Chain U, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 70

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 50/58 (86%)
Query: 3  IIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          +I+V+ENEPF+VA+RRFKR+ EK G+L ++R REFYEKPTT RKR  A+A+KRH K++
Sbjct: 2  VIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL 59

>pdb|3FIH|U Chain U, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 51

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 44/51 (86%)
Query: 4  IRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIK 54
          I+V+ENEPF+VA+RRFKR+ EK G+L ++R REFYEKPTT RKR  A+A+K
Sbjct: 1  IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVK 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
3bbn_U	190	Ribosomal protein S21; small ribosomal subunit, sp	4e-19
3i1m_U	71	30S ribosomal protein S21; ribosome structure, pro	2e-18
3r8n_U	51	30S ribosomal protein S21; protein biosynthesis, R	8e-16

>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 190

 Score = 75.3 bits (184), Expect = 4e-19
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 1   MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
              + V +NEP E  + RF+R + + G++ + + R F+E    VRKRK   A KR+ +R 
Sbjct: 96  NVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 155

Query: 61  RSQQLPKK 68
              +   +
Sbjct: 156 PQARFTPQ 163

>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U 3ora_U ... Length = 71

 Score = 70.2 bits (172), Expect = 2e-18
 Identities = 38/68 (55%), Positives = 53/68 (77%)

Query: 1  MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRI 60
          M +I+V+ENEPF+VA+RRFKR+ EK G+L ++R REFYEKPTT RKR  A+A+KRH K++
Sbjct: 1  MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL 60

Query: 61 RSQQLPKK 68
            +   + 
Sbjct: 61 ARENARRT 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3i1m_U	71	30S ribosomal protein S21; ribosome structure, pro	99.91
3r8n_U	51	30S ribosomal protein S21; protein biosynthesis, R	99.84
3bbn_U	190	Ribosomal protein S21; small ribosomal subunit, sp	99.83

>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U 3ora_U ...

Probab=99.91  E-value=9.9e-28  Score=145.42  Aligned_cols=65  Identities=58%  Similarity=0.981  Sum_probs=50.9

Q ss_pred             CcEeeccCCCcHHHHHHHHHHHHHhhchHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy15221          1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYKRIRSQQL   65 (70)
Q Consensus         1 M~~V~V~~~E~ie~Alrrfkr~~~k~Gil~e~rrrr~yeKPs~krkrk~~ea~rR~rk~~r~~~~   65 (70)
                      |++|.|+||||||.||++|+++|+++||+.|+++++||||||++++++..+|+++.++++++++.
T Consensus         1 M~~V~V~enE~ie~ALRrfKR~~~k~Gil~e~Rrr~~yEKPs~kRkrk~~~a~kR~~k~~~~~~~   65 (71)
T 3i1m_U            1 MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENA   65 (71)
T ss_dssp             ---CEEECCSSCCSCCCTTTTSSSTHHHHTTSSSCCCSSSHHHHHHHHHHTSCC-----------
T ss_pred             CCeeEeCCCCCHHHHHHHHHHHHHHccHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999887654

>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.83  E-value=1.4e-23  Score=146.20  Aligned_cols=58  Identities=34%  Similarity=0.614  Sum_probs=52.5

Q ss_pred             CcEeeccCCCcHHHHHHHHHHHHHhhchHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Q psy15221          1 MTIIRVKENEPFEVAIRRFKRTIEKTGLLTDLRAREFYEKPTTVRKRKLAAAIKRHYK   58 (70)
Q Consensus         1 M~~V~V~~~E~ie~Alrrfkr~~~k~Gil~e~rrrr~yeKPs~krkrk~~ea~rR~rk   58 (70)
                      |++|.|++||+||.|||+|||+|+++||++|+|+++||||||++|+++..+|++|++|
T Consensus        96 M~~V~VkeNE~iE~ALRRFKRkveKeGIlrElRrRr~YEKPSeKRKRK~~eA~rR~rK  153 (190)
T 3bbn_U           96 NVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRR  153 (190)
T ss_dssp             -CCCCCCCCSSCCCCCCSSSTTTTTTHHHHSSSSCCCTTTTTTHHHHHHHHTTC----
T ss_pred             ccEEEecCCCCHHHHHHHHHHHHHHccHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999888

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00