Psyllid ID: psy15240

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccEEEcccccccccccccccccccccHHHHHHHHHcHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHccEEEEEccccEEccccccccEccccccccHHHHHccHHHHHHHHHHcccccHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkghapgagcqfamsceyrimvgpkytiglnetkmgiiapfWFVDTMVhtlgprqtelaltsgkmfTSAEALKVGlideevtsEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLitspqvqkGLGLYLQSLKKK
Flexible Loop (DISEMBL)
mkghapgagCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLitspqvqkglglylqslkkk
Low Complexity Region (SEG)
MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK
Disordered region (IsUnstruct)
********GCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLM*****DLKNVVDLITSPQVQKGLGLYL******
Disordered Region (DISOPRED)
MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK**
Disordered Region (DISEMBL)
********GCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK
Disordered Region (DISPRO)
MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
P42125	289	Enoyl-CoA delta isomerase	yes	N/A	0.993	0.532	0.448	1e-37
P23965	289	Enoyl-CoA delta isomerase	yes	N/A	0.993	0.532	0.461	4e-37
P42126	302	Enoyl-CoA delta isomerase	yes	N/A	0.993	0.509	0.448	2e-35
B7VGL4	723	Fatty acid oxidation comp	yes	N/A	0.535	0.114	0.395	4e-08
A5WH99	719	Fatty acid oxidation comp	yes	N/A	0.541	0.116	0.376	6e-08
Q9NTX5	307	Ethylmalonyl-CoA decarbox	no	N/A	0.845	0.426	0.289	2e-07
Q5R4W0	301	Ethylmalonyl-CoA decarbox	yes	N/A	0.845	0.435	0.289	2e-07
Q66FR8	729	Fatty acid oxidation comp	yes	N/A	0.612	0.130	0.350	2e-07
B2K0Z6	729	Fatty acid oxidation comp	yes	N/A	0.612	0.130	0.350	2e-07
B1JP63	729	Fatty acid oxidation comp	yes	N/A	0.612	0.130	0.350	2e-07

>sp|P42125|ECI1_MOUSE Enoyl-CoA delta isomerase 1, mitochondrial OS=Mus musculus GN=Eci1 PE=2 SV=2

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 2/156 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
           + G +P  GC  A+ C+YR+M   PKYTIGLNE+ +GI+APFWF D  V+T+G R+ E A
Sbjct: 133 INGASPAGGCLLALCCDYRVMADNPKYTIGLNESLLGIVAPFWFKDMYVNTIGHREAERA 192

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           L  G +F+ AEALKVG++D EV  E++  ++A + + ++  IP  +R+LTK M+R+ T  
Sbjct: 193 LQLGTLFSPAEALKVGVVD-EVVPEDQVHSKARSVMTKWLAIPDHSRQLTKNMMRKATAD 251

Query: 120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           NL++ +E D++N    I+   +QK L +YL+ LK+K
Sbjct: 252 NLIKQREADIQNFTSFISKDSIQKSLHMYLEKLKQK 287

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 3EC: .EC: 3EC: .EC: 8

>sp|P23965|ECI1_RAT Enoyl-CoA delta isomerase 1, mitochondrial OS=Rattus norvegicus GN=Eci1 PE=1 SV=1

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 106/156 (67%), Gaps = 2/156 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
           + G +P  GC  A++C+YRIM    KYTIGLNE+ +GI+APFW  D  V+T+G R  E A
Sbjct: 133 INGASPAGGCLMALTCDYRIMADNSKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERA 192

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           L  G +F  AEALKVGL+D EV  E++  ++A + +A++ TIP  +R+LTK M+R+ T  
Sbjct: 193 LQLGTLFPPAEALKVGLVD-EVVPEDQVHSKARSVMAKWFTIPDHSRQLTKSMMRKATAD 251

Query: 120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           NL++ +E D++N    I+   +QK L +YL+ LK+K
Sbjct: 252 NLIKQREADIQNFTSFISRDSIQKSLHVYLEKLKQK 287

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|P42126|ECI1_HUMAN Enoyl-CoA delta isomerase 1, mitochondrial OS=Homo sapiens GN=ECI1 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
           + G  P  GC  A++C+YRI+   P+Y IGLNET++GIIAPFW  DT+ +T+G R  E A
Sbjct: 146 INGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERA 205

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           L  G +F  AEAL+VG++D +V  EE+  + A + +AQ+  IP  AR+LTK M+R+ T S
Sbjct: 206 LQLGLLFPPAEALQVGIVD-QVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATAS 264

Query: 120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
            L+  ++ D++N V  I+   +QK L +YL+ LK++
Sbjct: 265 RLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 300

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|B7VGL4|FADB_VIBSL Fatty acid oxidation complex subunit alpha OS=Vibrio splendidus (strain LGP32) GN=fadB PE=3 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYT-IGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
           M+GHA G GC+  ++ ++RI  G K T IGL ETK+GI+  F     +   +G       
Sbjct: 109 MRGHALGGGCECVLATDFRI--GDKTTSIGLPETKLGIMPGFGGCVRLPRVIGADSAMEI 166

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEE 85
           +T GK   + EALKVGL+D  V +++
Sbjct: 167 ITQGKACRADEALKVGLLDAIVETDQ 192

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Vibrio splendidus (strain LGP32) (taxid: 575788)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A5WH99|FADB_PSYWF Fatty acid oxidation complex subunit alpha OS=Psychrobacter sp. (strain PRwf-1) GN=fadB PE=3 SV=1

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G A G GC+  + CEYR+M G K  IGL ET++GI   F         +G       +
Sbjct: 110 INGAALGGGCEMTLVCEYRVM-GDKAQIGLPETQLGIFPGFGGSVRTPRVIGIDNAVELI 168

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEE 85
            +GK    AEALK+GL+D  V  ++
Sbjct: 169 ATGKAQKPAEALKLGLVDAVVAQDD 193

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Psychrobacter sp. (strain PRwf-1) (taxid: 349106)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9NTX5|ECHD1_HUMAN Ethylmalonyl-CoA decarboxylase OS=Homo sapiens GN=ECHDC1 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           ++G A G G +F  +C++R+M  P+  I     +MGII  +     +V  +G RQ    L
Sbjct: 154 VQGWALGGGAEFTTACDFRLMT-PESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVL 212

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEE--AITRAETFLAQYAT-IPGAARKLTKLML--RE 115
           +      S  AL +G+++E + S +E  ++  A+ +L Q+    P   R L K +   RE
Sbjct: 213 SGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRE 272

Query: 116 KTISNLMENKEKDLKNVV 133
             +   ++N E+DL   V
Sbjct: 273 LYLEEALQN-ERDLLGTV 289

Decarboxylases ethylmalonyl-CoA decarboxylase, a potentially toxic metabolite, to form butyryl-CoA, suggesting it might be involved in metabolite proofreading. Also has methylmalonyl-CoA decarboxylase activityx at lower level.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q5R4W0|ECHD1_PONAB Ethylmalonyl-CoA decarboxylase OS=Pongo abelii GN=ECHDC1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           ++G A G G +F  +C++R+M  P+  I     +MGII  +     +V  +G RQ    L
Sbjct: 148 VQGWALGGGAEFTTACDFRLMT-PESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVL 206

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEE--AITRAETFLAQYAT-IPGAARKLTKLML--RE 115
           +      S  AL +G+++E + S +E  ++  A+ +L Q+    P   R L K +   RE
Sbjct: 207 SGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRE 266

Query: 116 KTISNLMENKEKDLKNVV 133
             +   ++N E+DL   V
Sbjct: 267 LYLEEALQN-ERDLLGTV 283

Decarboxylases ethylmalonyl-CoA decarboxylase, a potentially toxic metabolite, to form butyryl-CoA, suggesting it might be involved in metabolite proofreading. Also has methylmalonyl-CoA decarboxylase activityx at lower level.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=fadB PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A G GC+  ++ ++RI   P+  IGL ETK+GI+  F     +   LG       +
Sbjct: 109 INGYALGGGCECILATDFRI-ASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEII 167

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQ 97
            +GK  T+ +ALK+GL+D  V   E+ +  A T L Q
Sbjct: 168 ATGKDVTANDALKIGLVD-AVVDPEKLVGSALTMLKQ 203

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|B2K0Z6|FADB_YERPB Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fadB PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A G GC+  ++ ++RI   P+  IGL ETK+GI+  F     +   LG       +
Sbjct: 109 INGYALGGGCECILATDFRI-ASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEII 167

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQ 97
            +GK  T+ +ALK+GL+D  V   E+ +  A T L Q
Sbjct: 168 ATGKDVTANDALKIGLVD-AVVDPEKLVGSALTMLKQ 203

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Yersinia pseudotuberculosis serotype IB (strain PB1/+) (taxid: 502801)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|B1JP63|FADB_YERPY Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A G GC+  ++ ++RI   P+  IGL ETK+GI+  F     +   LG       +
Sbjct: 109 INGYALGGGCECILATDFRI-ASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEII 167

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQ 97
            +GK  T+ +ALK+GL+D  V   E+ +  A T L Q
Sbjct: 168 ATGKDVTANDALKIGLVD-AVVDPEKLVGSALTMLKQ 203

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
326368299	275	3,2-trans-enoyl-CoA isomerase, mitochond	0.993	0.56	0.558	1e-45
270004200	281	hypothetical protein TcasGA2_TC003524 [T	0.993	0.548	0.522	6e-42
189235323	814	PREDICTED: similar to AGAP012407-PA [Tri	0.993	0.189	0.522	2e-41
357612578	241	enoyl-CoA isomerase [Danaus plexippus]	1.0	0.643	0.483	3e-41
289741943	285	hydroxyacyl-CoA dehydrogenase/enoyl-CoA	0.993	0.540	0.535	4e-41
263173376	245	hydroxyacyl-CoA dehydrogenase/enoyl-CoA	0.993	0.628	0.529	4e-41
239792253	153	ACYPI007651 [Acyrthosiphon pisum]	0.909	0.921	0.560	9e-40
242019641	290	3,2-trans-enoyl-CoA isomerase, putative	1.0	0.534	0.483	2e-39
332373080	280	unknown [Dendroctonus ponderosae]	0.993	0.55	0.522	2e-39
225708238	303	3,2-trans-enoyl-CoA isomerase, mitochond	0.993	0.508	0.493	3e-39

>gi|326368299|ref|NP_001191928.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 114/154 (74%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + GH+P  GC FAMSC+YR+MVGPKYTIGLNETK+GI+AP WF DTMV  +G R+ E++L
Sbjct: 122 INGHSPAGGCLFAMSCDYRVMVGPKYTIGLNETKLGIVAPKWFQDTMVAVIGQRKAEVSL 181

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
           T+GKM+T+ EAL+VGLIDE +   + A+ +   FL  +  I   A K+TK + R+ T+  
Sbjct: 182 TTGKMYTTDEALQVGLIDESLPDADSALKKGTQFLNNFQRISPWAFKMTKDISRQPTVQW 241

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK 154
           L++NK+KDL  V+  + SP VQK LGLYLQSLKK
Sbjct: 242 LIDNKQKDLDFVLKFMQSPDVQKSLGLYLQSLKK 275

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004200|gb|EFA00648.1| hypothetical protein TcasGA2_TC003524 [Tribolium castaneum]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 111/155 (71%), Gaps = 1/155 (0%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + GHAP  GC  ++SCEYRIM+   +TIGLNET++GI+AP WF+ +M + +G RQTELAL
Sbjct: 126 INGHAPAGGCLLSLSCEYRIMLN-NFTIGLNETQLGIVAPQWFIASMRNVIGTRQTELAL 184

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
           TSG +F++ EALK+G+IDE   S+E+ I RAE F  ++A IP  AR  +KL +R   I +
Sbjct: 185 TSGNLFSTDEALKIGMIDEVAASKEDGIARAEKFCGRFARIPPIARARSKLGVRGADIQD 244

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           L  N +KD +NV + +    VQKGL +YLQSLK+K
Sbjct: 245 LTNNLQKDYENVANYVAQDSVQKGLEMYLQSLKQK 279

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235323|ref|XP_975184.2| PREDICTED: similar to AGAP012407-PA [Tribolium castaneum]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 111/155 (71%), Gaps = 1/155 (0%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + GHAP  GC  ++SCEYRIM+   +TIGLNET++GI+AP WF+ +M + +G RQTELAL
Sbjct: 659 INGHAPAGGCLLSLSCEYRIMLN-NFTIGLNETQLGIVAPQWFIASMRNVIGTRQTELAL 717

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
           TSG +F++ EALK+G+IDE   S+E+ I RAE F  ++A IP  AR  +KL +R   I +
Sbjct: 718 TSGNLFSTDEALKIGMIDEVAASKEDGIARAEKFCGRFARIPPIARARSKLGVRGADIQD 777

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           L  N +KD +NV + +    VQKGL +YLQSLK+K
Sbjct: 778 LTNNLQKDYENVANYVAQDSVQKGLEMYLQSLKQK 812

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612578|gb|EHJ68073.1| enoyl-CoA isomerase [Danaus plexippus]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 108/155 (69%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + GHAP  GC  AMSCEYR+M G  ++IGLNET +GI+AP WF+DTM +T+  R+ E AL
Sbjct: 86  INGHAPAGGCLLAMSCEYRVMTGGNFSIGLNETALGIVAPNWFMDTMTNTIPVREAEYAL 145

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
           T+ +MF   EALKVGLIDE  T +++AI + + F+ ++  IP  AR +TKL +R+  I  
Sbjct: 146 TTARMFNVEEALKVGLIDEVATDKDDAIAKCKGFIGKFDRIPALARSITKLKMRQAAIKR 205

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           L + + +DL   +  + +P++QK L +Y+QSLKKK
Sbjct: 206 LQDGRREDLNEFLQFVQNPKIQKSLEMYIQSLKKK 240

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741943|gb|ADD19719.1| hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Glossina morsitans morsitans]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/155 (53%), Positives = 107/155 (69%), Gaps = 1/155 (0%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + GH+P  GC  A SCEYR+M+ PKYTIGLNET++GI+AP WF+ T  + L  R  E AL
Sbjct: 130 INGHSPAGGCLLATSCEYRVML-PKYTIGLNETQLGIVAPKWFMSTFRNVLPRRVAEQAL 188

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
           T GKMFTS EALK+GL+DE   S+EEA+ + E F A ++     AR LTK  LR   I  
Sbjct: 189 TQGKMFTSDEALKIGLVDELAASKEEALLKCEKFFASFSKTDPIARYLTKKQLRHNDIKE 248

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           L++ + +D++N V  +  P VQKGLGLYL+SLKKK
Sbjct: 249 LLDERVQDVENFVLFVNQPSVQKGLGLYLESLKKK 283

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|263173376|gb|ACY69926.1| hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Cimex lectularius]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/155 (52%), Positives = 108/155 (69%), Gaps = 1/155 (0%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + GH+P  GC  A+SCE+R++V P  TIGLNET++GI+AP WF D M +T+G RQ E AL
Sbjct: 92  INGHSPAGGCLLALSCEHRVIV-PNVTIGLNETQLGIVAPQWFQDCMRNTIGERQAEKAL 150

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
            SGKMFTS EAL VGL+DE    ++EA+ + ETFL   + +P  AR+  KL  R  T+S 
Sbjct: 151 VSGKMFTSDEALVVGLVDELANDKDEAVKKCETFLESQSKLPSLARRTVKLGFRNDTLSR 210

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           L+  +E D K  +D I  P+VQ+GL +YLQSLKKK
Sbjct: 211 LLNGREADTKLFLDYIFQPKVQQGLEVYLQSLKKK 245

Source: Cimex lectularius

Species: Cimex lectularius

Genus: Cimex

Family: Cimicidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239792253|dbj|BAH72489.1| ACYPI007651 [Acyrthosiphon pisum]

 Score =  168 bits (425), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 105/141 (74%)

Query: 14  MSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALK 73
           MSC+YR+MVGPKYTIGLNETK+GI+AP WF DTMV  +G R+ E++LT+GKM+T+ EAL+
Sbjct: 13  MSCDYRVMVGPKYTIGLNETKLGIVAPKWFQDTMVAVIGQRKAEVSLTTGKMYTTDEALQ 72

Query: 74  VGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVV 133
           VGLIDE +   + A+ +   FL  +  I   A K+TK + R+ T+  L++NK+KDL  V+
Sbjct: 73  VGLIDESLPDADSALKKGTQFLNNFQRISPWAFKMTKDISRQPTVQWLIDNKQKDLDFVL 132

Query: 134 DLITSPQVQKGLGLYLQSLKK 154
             + SP VQK LGLYLQSLKK
Sbjct: 133 KFMQSPDVQKSLGLYLQSLKK 153

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019641|ref|XP_002430268.1| 3,2-trans-enoyl-CoA isomerase, putative [Pediculus humanus corporis] gi|212515375|gb|EEB17530.1| 3,2-trans-enoyl-CoA isomerase, putative [Pediculus humanus corporis]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 107/155 (69%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + GH+PGAGC  A SC+YR+MV  K +IGLNET++G++ P WF+DT  + +  RQ+ELAL
Sbjct: 133 ITGHSPGAGCLIACSCDYRVMVQGKSSIGLNETQLGLVVPSWFIDTFRNIVSKRQSELAL 192

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
            SGK+FT+ EALK+ L+DE V     AI RA  +++Q ++    A   TKL LR   I  
Sbjct: 193 ISGKLFTADEALKINLVDEVVEDNNAAIERANAYISQLSSYSLHAMSQTKLSLRYDAIKR 252

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           L +N+E DL+     +TSP++QKGL +YL+++KKK
Sbjct: 253 LQDNREHDLRVFTKFVTSPEIQKGLQVYLENIKKK 287

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373080|gb|AEE61681.1| unknown [Dendroctonus ponderosae]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 112/155 (72%), Gaps = 1/155 (0%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G AP  GC  ++ CEYRIMV PK  IGLNET++GI+AP WF  +M + +G RQTELAL
Sbjct: 124 INGPAPAGGCLLSLCCEYRIMV-PKAVIGLNETQLGIVAPSWFAASMENVIGKRQTELAL 182

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
           T+GK+FT+ EALKVGLIDE V ++EE + +A+ F+  +A I   AR L+K  +R  TI +
Sbjct: 183 TTGKLFTTDEALKVGLIDEVVQTKEEGLEKAQGFIGSFARISPFARSLSKQTVRGGTIRS 242

Query: 121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           +++ +E DL+  +  I   QVQKGLGLY+++LKKK
Sbjct: 243 MVKGREADLQLFLATIQQDQVQKGLGLYIEALKKK 277

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225708238|gb|ACO09965.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor [Osmerus mordax]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 111/156 (71%), Gaps = 2/156 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
           + G +P  GC  +M+C+YRIM   P+Y+IGLNETK+GI+APFWF DTMV+T+G R TE+A
Sbjct: 147 INGSSPAGGCLMSMACDYRIMADNPRYSIGLNETKLGIVAPFWFKDTMVNTVGHRTTEIA 206

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           L  G ++TS EALK+GL+D+ V  EE+ +T A   + ++  IP  AR++TK M+R++TI 
Sbjct: 207 LELGLLYTSPEALKIGLVDQLV-PEEQVLTTATETMTKWLAIPDHARQITKSMMRKQTID 265

Query: 120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
            L+ N+E D  N V  IT   +Q+ L +YL+ LKK+
Sbjct: 266 KLLANREADTHNFVSFITKDSIQRSLRMYLEMLKKR 301

Source: Osmerus mordax

Species: Osmerus mordax

Genus: Osmerus

Family: Osmeridae

Order: Osmeriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
ZFIN|ZDB-GENE-030131-6033	329	eci1 "enoyl-CoA delta isomeras	0.993	0.468	0.461	7.2e-36
FB|FBgn0032160	281	CG4598 [Drosophila melanogaste	0.993	0.548	0.477	9.2e-36
MGI|MGI:94871	289	Eci1 "enoyl-Coenzyme A delta i	0.993	0.532	0.448	8.3e-35
RGD|61892	289	Eci1 "enoyl-CoA delta isomeras	0.993	0.532	0.461	2.8e-34
UNIPROTKB|H3BP91	294	ECI1 "Enoyl-CoA delta isomeras	0.993	0.523	0.448	6.7e-33
UNIPROTKB|P42126	302	ECI1 "Enoyl-CoA delta isomeras	0.993	0.509	0.448	6.7e-33
UNIPROTKB|Q96DC0	243	DCI "Dodecenoyl-Coenzyme A del	0.993	0.633	0.448	6.7e-33
UNIPROTKB|I3LLH8	172	ECI1 "Uncharacterized protein"	0.993	0.895	0.410	1.8e-32
FB|FBgn0032161	280	CG4594 [Drosophila melanogaste	0.993	0.55	0.464	6e-32
UNIPROTKB|E1C3T6	294	ECI1 "Uncharacterized protein"	0.993	0.523	0.423	6e-32

ZFIN|ZDB-GENE-030131-6033 eci1 "enoyl-CoA delta isomerase 1" [Danio rerio (taxid:7955)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 72/156 (46%), Positives = 106/156 (67%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G++P  GC  AM C+YRIM   P+Y+IGLNET++GI+APFWF DTM++ +G R+TE  
Sbjct:   173 INGNSPAGGCLLAMCCDYRIMADNPRYSIGLNETQLGIVAPFWFKDTMLNVVGHRETEKG 232

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G ++ +  ALK+GL+DE V  ++   T AET + ++  IP  AR+++K M+R+ T+ 
Sbjct:   233 LQLGLLYNTPNALKIGLVDELVPEDKVLSTAAET-MTKWLAIPDHARQISKSMMRKPTVD 291

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
              L+ N+E D  N V  IT   +QK LG+Y+  LKKK
Sbjct:   292 KLLANREADTTNFVSFITKDSIQKSLGMYMAMLKKK 327

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0032160 CG4598 [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 74/155 (47%), Positives = 101/155 (65%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
             + GH+P  GC  A SCEYR+MV P +TIGLNET++GI+AP WF+ + +  L  R  E AL
Sbjct:   124 INGHSPAGGCLLATSCEYRVMV-PNFTIGLNETQLGIVAPQWFMASFLSVLPQRIAERAL 182

Query:    61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
               G+MFT+ EALKVGLIDE   ++EEAI +   F+  +A +   AR LTK   R   +  
Sbjct:   183 NQGRMFTTEEALKVGLIDETANNKEEAIEKCVAFIGTFAKVNPLARSLTKQQFRAADLQQ 242

Query:   121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
             L   +++DL+  +  +  P VQKGLG+YL+ LKKK
Sbjct:   243 LQNGRKEDLEKFLFFVNQPAVQKGLGIYLEGLKKK 277

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

MGI|MGI:94871 Eci1 "enoyl-Coenzyme A delta isomerase 1" [Mus musculus (taxid:10090)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 70/156 (44%), Positives = 107/156 (68%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G +P  GC  A+ C+YR+M   PKYTIGLNE+ +GI+APFWF D  V+T+G R+ E A
Sbjct:   133 INGASPAGGCLLALCCDYRVMADNPKYTIGLNESLLGIVAPFWFKDMYVNTIGHREAERA 192

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G +F+ AEALKVG++DE V  E++  ++A + + ++  IP  +R+LTK M+R+ T  
Sbjct:   193 LQLGTLFSPAEALKVGVVDE-VVPEDQVHSKARSVMTKWLAIPDHSRQLTKNMMRKATAD 251

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
             NL++ +E D++N    I+   +QK L +YL+ LK+K
Sbjct:   252 NLIKQREADIQNFTSFISKDSIQKSLHMYLEKLKQK 287

GO:0003824 "catalytic activity" evidence=IEA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA;IDA

GO:0016853 "isomerase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

RGD|61892 Eci1 "enoyl-CoA delta isomerase 1" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 72/156 (46%), Positives = 106/156 (67%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G +P  GC  A++C+YRIM    KYTIGLNE+ +GI+APFW  D  V+T+G R  E A
Sbjct:   133 INGASPAGGCLMALTCDYRIMADNSKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERA 192

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G +F  AEALKVGL+DE V  E++  ++A + +A++ TIP  +R+LTK M+R+ T  
Sbjct:   193 LQLGTLFPPAEALKVGLVDE-VVPEDQVHSKARSVMAKWFTIPDHSRQLTKSMMRKATAD 251

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
             NL++ +E D++N    I+   +QK L +YL+ LK+K
Sbjct:   252 NLIKQREADIQNFTSFISRDSIQKSLHVYLEKLKQK 287

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IEA;ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISO;TAS

GO:0008152 "metabolic process" evidence=ISO

GO:0042802 "identical protein binding" evidence=IDA

UNIPROTKB|H3BP91 ECI1 "Enoyl-CoA delta isomerase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 70/156 (44%), Positives = 105/156 (67%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G  P  GC  A++C+YRI+   P+Y IGLNET++GIIAPFW  DT+ +T+G R  E A
Sbjct:   138 INGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERA 197

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G +F  AEAL+VG++D+ V  EE+  + A + +AQ+  IP  AR+LTK M+R+ T S
Sbjct:   198 LQLGLLFPPAEALQVGIVDQ-VVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATAS 256

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
              L+  ++ D++N V  I+   +QK L +YL+ LK++
Sbjct:   257 RLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 292

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|P42126 ECI1 "Enoyl-CoA delta isomerase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 70/156 (44%), Positives = 105/156 (67%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G  P  GC  A++C+YRI+   P+Y IGLNET++GIIAPFW  DT+ +T+G R  E A
Sbjct:   146 INGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERA 205

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G +F  AEAL+VG++D+ V  EE+  + A + +AQ+  IP  AR+LTK M+R+ T S
Sbjct:   206 LQLGLLFPPAEALQVGIVDQ-VVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATAS 264

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
              L+  ++ D++N V  I+   +QK L +YL+ LK++
Sbjct:   265 RLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 300

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;NAS;TAS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=NAS;TAS

GO:0005759 "mitochondrial matrix" evidence=NAS;TAS

GO:0016860 "intramolecular oxidoreductase activity" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q96DC0 DCI "Dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 70/156 (44%), Positives = 105/156 (67%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G  P  GC  A++C+YRI+   P+Y IGLNET++GIIAPFW  DT+ +T+G R  E A
Sbjct:    87 INGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERA 146

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G +F  AEAL+VG++D+ V  EE+  + A + +AQ+  IP  AR+LTK M+R+ T S
Sbjct:   147 LQLGLLFPPAEALQVGIVDQ-VVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATAS 205

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
              L+  ++ D++N V  I+   +QK L +YL+ LK++
Sbjct:   206 RLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 241

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|I3LLH8 ECI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 64/156 (41%), Positives = 106/156 (67%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G  P  GC  +++C+YR++   PKY +GLNET +GI+APFWF D++++T+G R TE A
Sbjct:    16 INGACPAGGCLLSLTCDYRVLADNPKYLMGLNETLLGIVAPFWFKDSIMNTIGHRATEQA 75

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G +   AEAL+VG++D+ V  E++ ++ A + +A++  +P  AR+LTK M+R+ T  
Sbjct:    76 LQLGSLLPPAEALQVGMVDQ-VVPEDQLLSTALSVMAKWLAVPDHARQLTKSMIRQATAD 134

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
              L++ ++ D++N V  I+   +QK L  YL+ LK+K
Sbjct:   135 RLLKQRDADIQNFVSFISKDAIQKSLQTYLEKLKQK 170

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IEA

FB|FBgn0032161 CG4594 [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 72/155 (46%), Positives = 96/155 (61%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
             + GHAP  GC  A +CEYR+M  P + IGLNE ++GIIAP W +      L  R  E AL
Sbjct:   124 INGHAPAGGCLLATACEYRVM-RPNFLIGLNEAQLGIIAPKWLMSGFASILPKRVAERAL 182

Query:    61 TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
             T G+MFT+ EA +VGLIDE  +S+EEA+ +   F+  +A +   AR LTKL  R   I  
Sbjct:   183 TQGRMFTTQEAFEVGLIDEIASSKEEALEKCAAFIGTFAKVNPLARGLTKLQFRGDNIKE 242

Query:   121 LMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
                 +EKD+ + V L +SP VQK +G YL++LK K
Sbjct:   243 FEMIREKDIADFVALASSPGVQKVMGAYLENLKNK 277

GO:0005739 "mitochondrion" evidence=ISS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|E1C3T6 ECI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 66/156 (42%), Positives = 103/156 (66%)

Query:     1 MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
             + G +P  GC  A+SC+YRIMV  PKY IGLNE ++GI+APFWF DT V+ +G R  E +
Sbjct:   138 INGSSPAGGCLIALSCDYRIMVENPKYVIGLNEAQLGIVAPFWFKDTFVNAVGHRAAERS 197

Query:    60 LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
             L  G + +  EA ++GL+DE V  EE+   +A   +AQ+  +P  AR+LTK M+R+  + 
Sbjct:   198 LQLGLLHSVPEAHRMGLVDE-VVPEEKLQEKAVAVMAQWLALPDHARQLTKSMMRKAVLD 256

Query:   120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
             +++ ++E+D++N V   +   +QK L  Y++ L+KK
Sbjct:   257 HMLAHREEDIQNFVKFTSKDSIQKSLSTYMEMLRKK 292

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	155
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	3e-30
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	4e-21
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	3e-20
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	4e-18
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	4e-12
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-10
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	8e-10
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	2e-08
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	4e-08
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	2e-07
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	3e-07
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	3e-07
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	1e-06
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	2e-06
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	2e-04
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	4e-04
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-04
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	5e-04
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	0.001
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	0.001
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	0.002
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	0.002
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	0.004

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  109 bits (274), Expect = 3e-30
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A G G + A++C+YRI        GL E K+GII        +   +G       L
Sbjct: 97  VNGYALGGGLELALACDYRIA-ADNAKFGLPEVKLGIIPGAGGTQRLPRIIGVSAALEML 155

Query: 61  TSGKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQYATIPGAARKLTKLMLREKT 117
            +G+   + EALK+GL+D+ V  E   EEAI  A+    + A  P  A    K  +R   
Sbjct: 156 LTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQ----RLADKPPLALAALKAAMRAAL 211

Query: 118 ISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS 151
              L E + + L+      ++  V++G+  +L+ 
Sbjct: 212 EDALPEVRAQALRLYPAPFSTDDVKEGIQAFLEK 245

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score = 84.5 bits (210), Expect = 4e-21
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELA 59
           + G A G G + A++C+ RI        GL E K+G++        +   +GP +  EL 
Sbjct: 100 VNGAALGGGLELALACDIRIA-AEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQ 97
           LT G+  ++ EAL++GL+D EV  +EE +  A     +
Sbjct: 159 LT-GRRISAEEALELGLVD-EVVPDEELLAAALELARR 194

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 83.8 bits (207), Expect = 3e-20
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP-FWFVDTMVHTLGPRQTELA 59
           ++G  P  GC  ++ C+YR+    + T+GLNE  +GI  P FW    M   +  +  E  
Sbjct: 114 IRGACPAGGCAVSLCCDYRLQT-TEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESL 172

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           L  G++   AEA ++GLID EV      +  A + + +   +P AAR  TK +LRE
Sbjct: 173 LLRGRLVRPAEAKQLGLID-EVVPAAALMEAAASAMERALKLPSAARAATKALLRE 227

Length = 278

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score = 77.8 bits (192), Expect = 4e-18
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELA 59
           + G+A G G + A++C+ RI        GL E  +G++        +   LG  +  EL 
Sbjct: 105 VNGYALGGGLELALACDIRIAA-EDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELL 163

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           LT G+  ++AEAL++GL+DE V   EE + RA     + A  P  A   TK ++R    +
Sbjct: 164 LT-GEPISAAEALELGLVDEVVPDAEELLERALELARRLA-APPLALAATKRLVRAALEA 221

Query: 120 NLMENKEKDLKNVVDLITSPQVQKGL 145
           +L E  E +      L +S   ++G+
Sbjct: 222 DLAEALEAEALAFARLFSSEDFREGV 247

Length = 257

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           GHA   G    +S +YRI V   + IGLNE  +G+  P   ++     L P   + A+ +
Sbjct: 100 GHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVIN 159

Query: 63  GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLM 122
            +MF   EA+  G +D EV   E+ + RA+    + A +   A   TKL +R   +  + 
Sbjct: 160 AEMFDPEEAVAAGFLD-EVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIR 218

Query: 123 ENKEKDL 129
              E D 
Sbjct: 219 AAIEGDA 225

Length = 229

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 21/95 (22%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PR- 54
           + G+A G GC+  ++ +YR+   P   IGL ETK+GI+  F          G     PR 
Sbjct: 109 INGYALGGGCECVLATDYRVA-SPDARIGLPETKLGIMPGF----------GGTVRLPRL 157

Query: 55  -QTELAL---TSGKMFTSAEALKVGLIDEEVTSEE 85
              + AL    +GK   + +ALKVG +D  V  E+
Sbjct: 158 IGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192

Length = 715

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G A G GC+  ++ ++RI       IGL ETK+GI+  F     +   +G       +
Sbjct: 109 INGIALGGGCECVLATDFRIA-DDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWI 167

Query: 61  TSGKMFTSAEALKVGLIDEEVTSE 84
            SGK   + +ALKVG +D  VT++
Sbjct: 168 ASGKENRAEDALKVGAVDAVVTAD 191

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 12/120 (10%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           ++G+  G G   A++C+ RI        G+   ++G+   +  V  +V  +GP   +   
Sbjct: 113 IRGYCIGGGMGIALACDIRI-AAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF 171

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQY-ATIPGAARKLT----KLMLRE 115
            + + F +AEAL++GL+     +++      ET LA Y ATI G A  LT    K  + E
Sbjct: 172 YTARRFDAAEALRIGLVHRVTAADD-----LETALADYAATIAGNA-PLTLRAAKRAIAE 225

Length = 269

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PR-QTELAL 60
           GHA  AG   A+S +Y +M   +  + ++E  +G+  P +F+  +   +G P  + ++ L
Sbjct: 103 GHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLL 162

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
            + K+ T+ EA+++G++D    S EE +  A
Sbjct: 163 RAAKL-TAEEAVEMGIVDSAHDSAEETVEAA 192

Length = 239

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           G+A G GC+ AM  +  I+ G   + G  E K+G++        +V  +G  +      +
Sbjct: 107 GYALGGGCELAMHADI-IVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALT 165

Query: 63  GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAA 105
           G M  + EAL +GL+  EV  +E+ + RA     + A +P  A
Sbjct: 166 GCMVPAPEALAIGLV-SEVVEDEQTLPRALELAREIARMPPLA 207

Length = 261

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALT 61
           G A G G + AMSC  R        +GL E  +G+I  F     +   +G  +  E+ LT
Sbjct: 103 GAALGGGLELAMSCHIRF-ATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLT 161

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYAT 100
           S +  T AEALK GL+   V  EE  +  A+    + A 
Sbjct: 162 S-EPITGAEALKWGLV-NGVFPEETLLDDAKKLAKKIAG 198

Length = 257

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 15/129 (11%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP----FWFVDTMVHTLG-PRQTE 57
           G A GAGC  A  C+ RI          +  K+G+I P     W    +   +G  R  E
Sbjct: 112 GPAIGAGCDLACMCDIRI-ASETARFAESFVKLGLI-PGDGGAWL---LPRIIGMARAAE 166

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE-- 115
           +A T G    +A AL+ GL+   V   ++ +  A     + A  P  A +LTK +LRE  
Sbjct: 167 MAFT-GDAIDAATALEWGLV-SRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQ 224

Query: 116 -KTISNLME 123
             ++  L+E
Sbjct: 225 HASLDTLLE 233

Length = 266

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           G A G GC+ +M+C+ RI    K   G  E  +GI   F     +   +GP + +  + +
Sbjct: 106 GFALGGGCELSMACDIRI-ASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYT 164

Query: 63  GKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQ 97
           G M  + EAL++GL+++ V  E   EEA   A    A 
Sbjct: 165 GDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202

Length = 260

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G G   A++C+            L   K+G+         +  ++   G  R  E+
Sbjct: 105 GPAVGVGVSLALACDLVY-ASESAKFSLPFAKLGLCPDAGGSALLPRLI---GRARAAEM 160

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118
            L  G+  ++ EAL++GL++  V    E    A+   A+ A  P +A + TK  +   T+
Sbjct: 161 LLL-GEPLSAEEALRIGLVN-RVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATL 218

Query: 119 SNL 121
           + L
Sbjct: 219 TEL 221

Length = 259

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP----FWFVDTMVHTLGPRQTEL 58
           G A GAG   A++ + RI  GPK        K+G + P     W    +   +GP+    
Sbjct: 104 GAAVGAGLNLALAADVRI-AGPKALFDARFQKLG-LHPGGGATWM---LQRAVGPQVARA 158

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLR 114
           AL  G  F +  A++ GL        ++ +  A    A  A  P      TK  +R
Sbjct: 159 ALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAPRELVLATKASMR 211

Length = 249

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALT 61
           G+A GAGC+ A+ C+  ++ G     GL E  +GI+        ++ ++G    +++ LT
Sbjct: 101 GYALGAGCELALLCDI-VIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLT 159

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLR 114
            G+  T+ +A + GL+  EV   E  + RA    ++ A     A +  K  LR
Sbjct: 160 -GESITAQQAQQAGLV-SEVFPPELTLERALQLASKIARHSPLALRAAKQALR 210

Length = 255

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           G A G G + A++C+  I+     T  L E ++G+ A    +  +   +G ++    + +
Sbjct: 103 GVAMGGGFELALACDL-IVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILT 161

Query: 63  GKMFTSAEALKVGLIDEEVTSEEEAITRAE 92
           G+  T+ E L++G ++ EV    E +  AE
Sbjct: 162 GRRVTAREGLELGFVN-EVVPAGELLAAAE 190

Length = 259

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 11/62 (17%)

Query: 29  GLNETKMGI----IAPFWFVDTMVHTLGPRQ-TELALTSGKMFTSAEALKVGLIDEEVTS 83
            L+E ++G+    I+P+     ++  +G R      LT  + F +AEAL++GL+ E V +
Sbjct: 133 CLSEVRLGLIPATISPY-----VIRAMGERAARRYFLT-AERFDAAEALRLGLVHEVVPA 186

Query: 84  EE 85
           E 
Sbjct: 187 EA 188

Length = 262

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           G+A GAG   A++ ++R+  G     G  E   G+      +  +    GP + +  + S
Sbjct: 108 GYALGAGLTLALAADWRVS-GDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFS 166

Query: 63  GKMFTSAEALKVGLIDEEVTSE---EEAITRAETFL 95
           G+ F + EAL +GLIDE V  +   + A   A  FL
Sbjct: 167 GRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFL 202

Length = 222

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNL 121
            GK  ++ EAL +GLIDE      +  T A+  ++++   P  A   TK +  E   S L
Sbjct: 165 EGKKLSATEALDLGLIDE--VIGGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQL 222

Length = 260

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELA 59
           + G A G G + A++C++RI      ++GL ET + II        +   +G  R  EL 
Sbjct: 104 INGIALGGGLELALACDFRIAA-ESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI 162

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYA 99
            T G+  ++ EA ++GL+ E V        +A     + A
Sbjct: 163 YT-GRRISAQEAKEIGLV-EFVVPAHLLEEKAIEIAEKIA 200

Length = 260

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 24/142 (16%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI----IAPFWFVDTMVHTLGPRQTEL 58
           G A G G      C+  I V      GL ET++G+    I+P+     +V  +G      
Sbjct: 109 GQAFGGGVGLISVCDVAIAV-SGARFGLTETRLGLIPATISPY-----VVARMGEANARR 162

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEE-EAITRAETFLAQY-ATIPGAARKLTKLMLR-- 114
              S ++F + EA+++GL+   V +E  +A   AE  +  Y +  PGA      L+    
Sbjct: 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAE--VTPYLSCAPGAVAAAKALVRALG 220

Query: 115 --------EKTISNLMENKEKD 128
                   + TI  L +  E +
Sbjct: 221 APIDEAVIDATIEALADTWETE 242

Length = 262

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT------LGPR 54
           + G   G G + A +C+ RI        G+ E ++GI  P     +++H       +G  
Sbjct: 107 IPGWCLGGGLELAAACDLRI-AAHDAQFGMPEVRVGI--P-----SVIHAALLPRLIGWA 158

Query: 55  QTELALTSGKMFTSAEALKVGLIDEEVTSEE--EAITRAETFLAQYATIPGAARKLTKLM 112
           +T   L +G+   +A+AL  GL+D  V   E   A+ R    LA     P A R+  K +
Sbjct: 159 RTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG--PQALRQ-QKRL 215

Query: 113 LRE 115
           LRE
Sbjct: 216 LRE 218

Length = 256

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
KOG1680|consensus	290		100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG0016|consensus	266		100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	99.98
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.98
PRK05869	222	enoyl-CoA hydratase; Validated	99.98
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.97
PRK08290	288	enoyl-CoA hydratase; Provisional	99.97
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.97
KOG1679|consensus	291		99.97
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.97
PRK08272	302	enoyl-CoA hydratase; Provisional	99.97
KOG1681|consensus	292		99.97
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	99.96
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	99.96
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.95
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.95
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	99.95
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.93
KOG1682|consensus	287		99.93
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	99.92
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.91
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.91
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	99.9
KOG1684|consensus	401		99.71
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.7
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.51
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.33
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.94
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	98.87
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	98.8
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	98.65
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	98.62
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	98.55
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	98.53
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.41
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.18
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.17
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.13
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.12
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.02
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.92
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	97.91
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.85
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.81
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.76
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.76
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	97.73
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.62
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.54
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.53
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.5
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.4
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.38
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	97.33
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.29
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.24
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.18
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.14
PRK11778	330	putative inner membrane peptidase; Provisional	97.06
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.03
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.0
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	96.99
PRK10949	618	protease 4; Provisional	96.97
KOG1683|consensus	380		96.78
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	96.64
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.56
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.56
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.26
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.23
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	95.81
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.5
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	95.43
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	94.95
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	94.74
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	94.68
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	94.38
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	89.25
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	87.89
smart00250	38	PLEC Plectin repeat.	87.12
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	86.23
PF00681	45	Plectin: Plectin repeat; InterPro: IPR001101 Plect	84.46
PRK10949	618	protease 4; Provisional	84.4

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-39  Score=242.98  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=146.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus        99 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  177 (255)
T PRK08150         99 LHGAVVGGGLELASAAHIRVAD-ESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYL  177 (255)
T ss_pred             ECCEEEcHHHHHHHhCCEEEEe-CCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++|+..+|.+++.+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       178 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  251 (255)
T PRK08150        178 VP-AGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAK  251 (255)
T ss_pred             eC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence            99 799999999999999999999999999999988777788888888888888999999999999999998875

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.6e-39  Score=242.13  Aligned_cols=153  Identities=20%  Similarity=0.313  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  179 (257)
T PRK05862        101 VAGYALGGGCELAMMCDIIIAA-DTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRV  179 (257)
T ss_pred             EccEEeHHHHHHHHHCCEEEEe-CCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++++++.++++++++.+|.++..+|++++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus       180 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~  253 (257)
T PRK05862        180 VP-ADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV  253 (257)
T ss_pred             eC-HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence            99 899999999999999999999999999999998777889999999999999999999999999999998874

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.5e-39  Score=242.07  Aligned_cols=153  Identities=18%  Similarity=0.193  Sum_probs=147.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus        98 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v  176 (254)
T PRK08252         98 VEGYALAGGFELALACDLIVAA-RDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRL  176 (254)
T ss_pred             ECCEEehHHHHHHHhCCEEEEe-CCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++.+.+++++++..||.+++.+|++++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus       177 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~  250 (254)
T PRK08252        177 TE-PGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV  250 (254)
T ss_pred             cC-cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999988777788889999999999999999999999999998774

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.2e-38  Score=240.53  Aligned_cols=153  Identities=22%  Similarity=0.291  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus        95 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v  173 (251)
T PLN02600         95 VEGAALGGGLELALSCDLRICG-EEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYC  173 (251)
T ss_pred             ecCeecchhHHHHHhCCEEEee-CCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++++.+++++|+..||.+++.+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       174 v~-~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~  247 (251)
T PLN02600        174 VP-AGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV  247 (251)
T ss_pred             eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999988777889999999999999999999999999999999874

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.5e-39  Score=242.52  Aligned_cols=153  Identities=17%  Similarity=0.273  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  185 (260)
T PRK05980        107 VNGLAFGGGCEITEAVHLAIAS-ERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV  185 (260)
T ss_pred             EcCEEEhhhhHHhHhCCEEEec-CCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcc
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++.+.++++++++.+|.++..+|+.++.....++.+.++.|...+...+.+++.++++.+|++||+|+
T Consensus       186 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  259 (260)
T PRK05980        186 VP-HEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA  259 (260)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence            99 799999999999999999999999999999988777889999999999999999999999999999999875

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-38  Score=241.55  Aligned_cols=153  Identities=20%  Similarity=0.300  Sum_probs=147.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       102 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  180 (258)
T PRK09076        102 INGYAMGGGLECALACDIRIAE-EQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEV  180 (258)
T ss_pred             ECCEEecHHHHHHHhCCEEEec-CCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++++..+|.+++.+|++++.....++.+.++.|...+..++.+++.++++++|++||+|+
T Consensus       181 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~  254 (258)
T PRK09076        181 VE-KGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ  254 (258)
T ss_pred             cC-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence            99 799999999999999999999999999999988777788999999999999999999999999999998874

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.8e-39  Score=243.83  Aligned_cols=154  Identities=15%  Similarity=0.223  Sum_probs=147.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       116 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~v  194 (272)
T PRK06142        116 VQGWCIGGGVDLISACDMRYAS-ADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRV  194 (272)
T ss_pred             ecCccccchHHHHHhCCEEEec-CCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +++.+++.+.+.+++++++..||.+++.+|+.++.....++++.++.+...+...+.+++.++++.+|++||+|+
T Consensus       195 v~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~  269 (272)
T PRK06142        195 YDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE  269 (272)
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence            994489999999999999999999999999999988777888999999999999999999999999999999875

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1.2e-38  Score=241.13  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=147.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       100 v~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  178 (256)
T TIGR02280       100 VNGVAAGAGANLALACDIVLAA-ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQV  178 (256)
T ss_pred             ECCeeehHHHHHHHhCCEEEec-CCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++.+++.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus       179 v~-~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  252 (256)
T TIGR02280       179 VD-DAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ  252 (256)
T ss_pred             eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence            99 799999999999999999999999999999988777888899999999999999999999999999999874

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-38  Score=240.57  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=147.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus        99 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  177 (255)
T PRK06563         99 VQGYCLTLGIELMLAADIVVAA-DNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV  177 (255)
T ss_pred             EcCeeecHHHHHHHhCCEEEec-CCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++++..||.+++.+|+.++.....++.+.++.|...+..++.+++.++++.+|++||+|+
T Consensus       178 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  251 (255)
T PRK06563        178 VP-PGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR  251 (255)
T ss_pred             eC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence            99 799999999999999999999999999999988777888899999999999999999999999999998874

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-38  Score=240.33  Aligned_cols=153  Identities=18%  Similarity=0.201  Sum_probs=147.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  184 (262)
T PRK08140        106 VNGVAAGAGANLALACDIVLAA-RSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRV  184 (262)
T ss_pred             ECCeeehhHHHHHHhCCEEEec-CCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..||.++..+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       185 v~-~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  258 (262)
T PRK08140        185 VD-DAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR  258 (262)
T ss_pred             eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence            99 788999999999999999999999999999988777889999999999999999999999999999998764

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-38  Score=240.49  Aligned_cols=153  Identities=18%  Similarity=0.265  Sum_probs=145.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||++
T Consensus       101 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~v  179 (259)
T PRK06494        101 VNGVAMGGGFELALACDLIVAA-ENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEV  179 (259)
T ss_pred             ECCEEecHHHHHHHhCCEEEEe-CCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKD--LKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++.+.+++++++..||.++..+|+.++.....++++.++.|  ...+..++.+++.++++.+|++||+|+
T Consensus       180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~  255 (259)
T PRK06494        180 VP-AGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR  255 (259)
T ss_pred             cC-HhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence            99 899999999999999999999999999999988777788888887  456788899999999999999998764

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-38  Score=241.18  Aligned_cols=153  Identities=22%  Similarity=0.266  Sum_probs=146.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus       110 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  188 (266)
T PRK09245        110 VNGPAIGAGCDLACMCDIRIAS-ETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRV  188 (266)
T ss_pred             ECCEeecHHHHHHHhCCEEEec-CCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++++.+.+++++|++.||.+++.+|++++......+++.+..|...+..++.+++.++++.+|++||+|+
T Consensus       189 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  262 (266)
T PRK09245        189 VP-ADQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV  262 (266)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999988777788888888888999999999999999999998874

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-38  Score=239.42  Aligned_cols=153  Identities=25%  Similarity=0.368  Sum_probs=147.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  179 (257)
T PRK07658        101 IHGAALGGGLELAMSCHIRFAT-ESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGV  179 (257)
T ss_pred             EcCeeeeHHHHHHHhCCEEEec-CCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.++++++++.+|.++..+|++++.....++++.++.|...+..++.+++.++++.+|++|++|+
T Consensus       180 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~  253 (257)
T PRK07658        180 FP-EETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS  253 (257)
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999988777889999999999999999999999999999998874

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=3.1e-38  Score=238.86  Aligned_cols=153  Identities=22%  Similarity=0.339  Sum_probs=147.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus        99 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v  177 (255)
T PRK09674         99 VNGYALGAGCELALLCDIVIAG-ENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEV  177 (255)
T ss_pred             ECCEeehHHHHHHHhCCEEEec-CCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus       178 v~-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~  251 (255)
T PRK09674        178 FP-PELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD  251 (255)
T ss_pred             cC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence            99 899999999999999999999999999999988777889999999999999999999999999999998774

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=2.2e-38  Score=242.00  Aligned_cols=154  Identities=16%  Similarity=0.194  Sum_probs=146.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       118 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  196 (275)
T PLN02664        118 IHGACIGGGVDIVTACDIRYCS-EDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRV  196 (275)
T ss_pred             ECCccccchHHHHHhCCEEEec-CCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCcee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +++.+++.+.+.+++++|+..+|.+++.+|+.++.....++.+.++.|...+..++.+++.++++++|++||+|+
T Consensus       197 v~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~  271 (275)
T PLN02664        197 FGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV  271 (275)
T ss_pred             eCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence            994488999999999999999999999999999988777888889999888999999999999999999999874

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-38  Score=239.05  Aligned_cols=153  Identities=24%  Similarity=0.321  Sum_probs=146.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus       105 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  183 (261)
T PRK08138        105 VNGYALGGGCELAMHADIIVAG-ESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEV  183 (261)
T ss_pred             EccEEEcHHHHHHHhCCEEEec-CCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+++.++++++++.||.++..+|+.++.....++++.+..|...+..++.+++.++++++|++||+|+
T Consensus       184 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~  257 (261)
T PRK08138        184 VE-DEQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA  257 (261)
T ss_pred             cC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence            99 789999999999999999999999999999988777788888999999999999999999999999998874

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-38  Score=239.14  Aligned_cols=153  Identities=20%  Similarity=0.280  Sum_probs=147.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       104 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  182 (260)
T PRK07657        104 INGIALGGGLELALACDFRIAA-ESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFV  182 (260)
T ss_pred             EcCEeechHHHHHHhCCEEEee-CCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++++.+.+++++++..+|.++..+|+.++......+++.++.|...+..++.+++.++++++|+++|+|+
T Consensus       183 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~  256 (260)
T PRK07657        183 VP-AHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM  256 (260)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999988777788899999999999999999999999999998874

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.5e-38  Score=240.45  Aligned_cols=153  Identities=20%  Similarity=0.287  Sum_probs=146.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccC-ChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA-PFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++|||||++ ++++|++||.++|++| +++++++|++++|..++++++++|++++++||+++||||+
T Consensus       120 V~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~  198 (277)
T PRK08258        120 VDGVCAGAGAILAMASDLRLGT-PSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNR  198 (277)
T ss_pred             ECCeeehHHHHHHHhCCEEEec-CCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcE
Confidence            7999999999999999999999 9999999999999995 6788999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ .+++++.+.+++++++..||.+++.+|+.++.....++++.++.|...+..++.+++.++++.+|++||+++
T Consensus       199 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  273 (277)
T PRK08258        199 LVE-PEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPV  273 (277)
T ss_pred             ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence            999 899999999999999999999999999999988777889999999999999999999999999999999874

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-38  Score=239.86  Aligned_cols=153  Identities=18%  Similarity=0.170  Sum_probs=147.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  185 (263)
T PRK07799        107 VEGPAIAGGTEILQGTDIRVAG-ESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHV  185 (263)
T ss_pred             ECCeEeccHHHHHHhCCEEEec-CCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++.+.+.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++|++|+
T Consensus       186 v~-~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~  259 (263)
T PRK07799        186 VP-DGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN  259 (263)
T ss_pred             cC-cchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence            99 889999999999999999999999999999988777788999999999999999999999999999998874

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-38  Score=239.19  Aligned_cols=153  Identities=19%  Similarity=0.297  Sum_probs=147.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       113 v~G~a~GgG~~LalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  191 (269)
T PRK06127        113 IRGYCIGGGMGIALACDIRIAA-EDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRV  191 (269)
T ss_pred             ECCEEecHHHHHHHhCCEEEee-CCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| .+++++.+.+++++++..||.+++.+|+.++.....+++..++.|...+..++.+++.++++.+|++|++|+
T Consensus       192 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~  265 (269)
T PRK06127        192 TA-ADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV  265 (269)
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999988777888889999999999999999999999999998874

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-38  Score=237.49  Aligned_cols=150  Identities=23%  Similarity=0.309  Sum_probs=144.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|+ |+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  184 (256)
T PRK06143        107 IPGWCLGGGLELAAACDLRIAA-HDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRV  184 (256)
T ss_pred             ECCEEeehhHHHHHhCCEEEec-CCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCee
Confidence            7999999999999999999999 99999999999998 778888999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      +| ++++.+.+.+++++++..||.++..+|+.++.....++++.++.|...+...+.+++.++++.+|++||+
T Consensus       185 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        185 VP-LAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence            99 8999999999999999999999999999999887778899999999999999999999999999999975

>KOG1680|consensus

Probab=100.00  E-value=1.5e-38  Score=235.89  Aligned_cols=153  Identities=21%  Similarity=0.309  Sum_probs=149.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|++.||+||++ +++.|++++.++|++|.+|++.+|++.+|.++|++++++|++++++||.++||||+|
T Consensus       134 inG~AlgGG~ELalmCDirva~-~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~V  212 (290)
T KOG1680|consen  134 INGFALGGGLELALMCDIRVAG-EGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKV  212 (290)
T ss_pred             eeceeeccchhhhhhcceEecc-CCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEe
Confidence            6899999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| .++++.++.+|+++|++.||.+++..|+.++...+..+.+.+..|...+...+..++.+|++.+|.+||++|
T Consensus       213 vp-~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~  286 (290)
T KOG1680|consen  213 VP-SGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPK  286 (290)
T ss_pred             ec-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcc
Confidence            99 899999999999999999999999999999999999999999999999999999999999999999998875

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=6.1e-38  Score=237.92  Aligned_cols=153  Identities=20%  Similarity=0.268  Sum_probs=144.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v  179 (261)
T PRK03580        101 VNGYAFGGGFELALAADFIVCA-DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRV  179 (261)
T ss_pred             ECCeeehHHHHHHHHCCEEEec-CCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDL----KNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| .+++.+.+.+++++|+..||.+++.+|+.++.....++++.++.|.    ..+..++.+++.++++.+|++||+++
T Consensus       180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~  257 (261)
T PRK03580        180 VP-QAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV  257 (261)
T ss_pred             cC-HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence            99 8999999999999999999999999999999887777777777765    36777899999999999999998864

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=7.2e-38  Score=237.44  Aligned_cols=153  Identities=22%  Similarity=0.414  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       104 v~G~a~GgG~~lal~cD~~va~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  182 (260)
T PRK05809        104 INGFALGGGCELSMACDIRIAS-EKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKV  182 (260)
T ss_pred             EcCeeecHHHHHHHhCCEEEee-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcc
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++++..||.++..+|+.++.....++.+.++.|...+..++.+++.++++.+|++||+|+
T Consensus       183 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~  256 (260)
T PRK05809        183 VE-PEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN  256 (260)
T ss_pred             cC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence            99 799999999999999999999999999999988777889999999999999999999999999999998874

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=7.8e-38  Score=239.11  Aligned_cols=153  Identities=30%  Similarity=0.516  Sum_probs=145.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeeccccccccc-CChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII-APFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~-~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++ |+++++++|++++|+.++++++++|++|+++||+++||||+
T Consensus       114 V~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~  192 (278)
T PLN03214        114 IRGACPAGGCAVSLCCDYRLQT-TEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDE  192 (278)
T ss_pred             EcCcccchHHHHHHhCCEEEec-CCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcE
Confidence            7999999999999999999999 999999999999994 88888999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ .+++++.+.+++++|+..+|.+++.+|+.++.....++++.++.|...+...+.+++.++++.+|++|.++|
T Consensus       193 vv~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~  267 (278)
T PLN03214        193 VVP-AAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSG  267 (278)
T ss_pred             ecC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            999 799999999999999999999999999999998888899999999999999999999999999999986554

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=7.3e-38  Score=237.90  Aligned_cols=153  Identities=14%  Similarity=0.194  Sum_probs=144.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||.++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus       106 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  184 (265)
T PLN02888        106 INGFAITAGFEIALACDILVAS-RGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHV  184 (265)
T ss_pred             ECCeeechHHHHHHhCCEEEec-CCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLI--TSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++++..+|.+++.+|+.++......+++.+..|...+..++  .+++.++++.+|++||++|
T Consensus       185 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~  260 (265)
T PLN02888        185 VE-ESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSK  260 (265)
T ss_pred             eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Confidence            99 78999999999999999999999999999998877778888888887777775  5899999999999998875

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.7e-38  Score=237.65  Aligned_cols=152  Identities=16%  Similarity=0.260  Sum_probs=144.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++ +++|++++|..+|++++++|++++++||+++||||+|
T Consensus       111 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  188 (266)
T PRK08139        111 VHGIATAAGCQLVASCDLAVAA-DTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRV  188 (266)
T ss_pred             ECceeeHHHHHHHHhCCEEEEe-CCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEe
Confidence            7999999999999999999999 9999999999999998764 5689999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..||.++..+|++++.....++++.++.|...+..++.+++.++++++|++|++|+
T Consensus       189 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  262 (266)
T PRK08139        189 VP-ADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE  262 (266)
T ss_pred             eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999988777888999999999999999999999999999998874

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.4e-38  Score=237.51  Aligned_cols=153  Identities=16%  Similarity=0.200  Sum_probs=147.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|+..+++++++|++++++||+++||||+|
T Consensus       110 v~G~a~GgG~~lalacD~~ia~-~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v  188 (266)
T PRK05981        110 VNGPAAGVGMSFALMGDLILCA-RSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRV  188 (266)
T ss_pred             ECCEeehHHHHHHHhCCEEEec-CCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++++.+.+++++++..|+.++..+|++++.....++.+.++.|...+...+.+++.++++.+|++|++|+
T Consensus       189 v~-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~  262 (266)
T PRK05981        189 VD-DAELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ  262 (266)
T ss_pred             eC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999888777888999999999999999999999999999999874

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=6.5e-38  Score=237.54  Aligned_cols=152  Identities=14%  Similarity=0.196  Sum_probs=140.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus       104 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  182 (259)
T TIGR01929       104 VNGYAIGGGHVLHVVCDLTIAA-ENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTV  182 (259)
T ss_pred             EcCEEehHHHHHHHhCCEEEec-CCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++.+.+.+++++|+..||.+++.+|++++..... .......|...+...+.+++.++++.+|++||+|+
T Consensus       183 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~  255 (259)
T TIGR01929       183 VP-LADLEKETVRWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD  255 (259)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence            99 899999999999999999999999999999876542 34445556677888999999999999999999874

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-37  Score=236.00  Aligned_cols=153  Identities=16%  Similarity=0.220  Sum_probs=147.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus       105 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v  183 (260)
T PRK07511        105 VEGAAAGAGFSLALACDLLVAA-RDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRL  183 (260)
T ss_pred             ECCeeehHHHHHHHhCCEEEee-CCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+++.++++++++.+|.++..+|+.++.....++.+.++.|...+..++.+|+.++++++|+++++++
T Consensus       184 v~-~~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~  257 (260)
T PRK07511        184 AE-PGQALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD  257 (260)
T ss_pred             eC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence            99 788999999999999999999999999999988777889999999999999999999999999999999875

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-37  Score=235.33  Aligned_cols=153  Identities=22%  Similarity=0.341  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus       103 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v  181 (259)
T PRK06688        103 VNGPAVGVGVSLALACDLVYAS-ESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRV  181 (259)
T ss_pred             ECCeeecHHHHHHHhCCEEEec-CCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++++..|+.++..+|+.++.....++++.+..|...+..++.+++.++++++|++|++|+
T Consensus       182 ~~-~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~  255 (259)
T PRK06688        182 VP-AAELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD  255 (259)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999998877899999999999999999999999999999998874

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=2.6e-37  Score=235.99  Aligned_cols=151  Identities=19%  Similarity=0.260  Sum_probs=141.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       111 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~v  189 (275)
T PRK09120        111 VNGWCFGGGFSPLVACDLAIAA-DEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNES  189 (275)
T ss_pred             EcCEEechhHHHHHhCCEEEEe-CCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHhcCH-HHHHHHHHHHhhcc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLK--NVVDLITSP-QVQKGLGLYLQSLK  153 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~--~~~~~~~~~-~~~~~~~~~~~~~~  153 (155)
                      +| ++++++.+.+++++|+..||.+++.+|+.++.....++.+.++.|..  ....++.++ +.++++++|++||.
T Consensus       190 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~  264 (275)
T PRK09120        190 VP-LAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS  264 (275)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence            99 89999999999999999999999999999999877778888777653  345568888 89999999999876

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-37  Score=234.99  Aligned_cols=152  Identities=18%  Similarity=0.325  Sum_probs=142.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++ .++++++|..++++++++|++++++||+++||||+|
T Consensus       106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v  183 (262)
T PRK05995        106 VHGDAYAGGMGLVAACDIAVAA-DHAVFCLSEVRLGLIPATIS-PYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEV  183 (262)
T ss_pred             ECCEEEhhHHHHHHhCCEEEee-CCCEEeCcccccccCccchH-HHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCee
Confidence            7999999999999999999999 99999999999999987765 468999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMEN-KEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| .+++.+.+.+++++++..||.++..+|+.++.....++.+. ++.|...+..++.+++.++++.+|++||+|+
T Consensus       184 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~  258 (262)
T PRK05995        184 VP-AEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA  258 (262)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence            99 89999999999999999999999999999998766677777 7778888889999999999999999999874

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-37  Score=234.06  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=142.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       100 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~v  178 (254)
T PRK08259        100 VSGYAVAGGLELALWCDLRVAE-EDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV  178 (254)
T ss_pred             ECCEEEhHHHHHHHhCCEEEec-CCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      +| .+++++.+.+++++|++.||.+++.+|++++.....++++.++.|...+...+. ++.++++.+|++|+.+
T Consensus       179 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~~  250 (254)
T PRK08259        179 VP-KGQARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAGR  250 (254)
T ss_pred             eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhcc
Confidence            99 899999999999999999999999999999987777788888888887777777 9999999999998654

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-37  Score=234.12  Aligned_cols=151  Identities=14%  Similarity=0.183  Sum_probs=146.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||++
T Consensus       105 v~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~v  183 (255)
T PRK07260        105 VDGAVAGAAANMAVAADFCIAS-TKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRV  183 (255)
T ss_pred             ecCeeehhhHHHHHhCCEEEEe-CCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      ++ .+++.+.+.++++++++.+|.+++.+|+.++.....++++.+..|...+..++.+++.++++.+|++|++
T Consensus       184 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        184 AE-SEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             cC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence            99 8999999999999999999999999999999987778899999999999999999999999999999875

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-37  Score=236.80  Aligned_cols=153  Identities=20%  Similarity=0.325  Sum_probs=146.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus       115 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~v  193 (272)
T PRK06210        115 INGACAGIGLTHALMCDVRFAA-DGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRV  193 (272)
T ss_pred             ECCeeehHHHHHHHhCCEEEEe-CCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATI-PGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+++.+++++++.. +|.++..+|+.++.....++++.++.|...+..++.+++.++++++|++||+|.
T Consensus       194 v~-~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~  268 (272)
T PRK06210        194 VP-PDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR  268 (272)
T ss_pred             cC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence            99 899999999999999985 999999999999988777888899999999999999999999999999998763

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=3.2e-37  Score=235.30  Aligned_cols=152  Identities=14%  Similarity=0.183  Sum_probs=141.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.+|++++|.+++++++++|++++++||+++||||+|
T Consensus       114 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~v  192 (273)
T PRK07396        114 VAGYAIGGGHVLHLVCDLTIAA-DNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTV  192 (273)
T ss_pred             ECCEEehHHHHHHHhCCEEEee-CCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..+|.+++.+|+.++.... ..+...+.|...+...+.+++.++++.+|++||+|+
T Consensus       193 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~  265 (273)
T PRK07396        193 VP-LADLEKETVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPD  265 (273)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCC
Confidence            99 89999999999999999999999999999987644 344445566777888899999999999999998764

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-37  Score=234.25  Aligned_cols=152  Identities=20%  Similarity=0.335  Sum_probs=142.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++++ +.+++|..++++|+++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lala~D~ria~-~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v  184 (262)
T PRK07468        107 IQGQAFGGGVGLISVCDVAIAV-SGARFGLTETRLGLIPATISPY-VVARMGEANARRVFMSARLFDAEEAVRLGLLSRV  184 (262)
T ss_pred             ECCEEEhHHHHHHHhCCEEEEe-CCCEEeCchhccCCCcccchhh-HHhhccHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence            7999999999999999999999 9999999999999999888876 4566999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| .+++.+.+.++++++++.+|.++..+|++++......+++.++.|...+..++.+++.++++.+|++|++++
T Consensus       185 ~~-~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~  258 (262)
T PRK07468        185 VP-AERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA  258 (262)
T ss_pred             cC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999887655678888889999999999999999999999999874

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.6e-37  Score=234.88  Aligned_cols=152  Identities=20%  Similarity=0.271  Sum_probs=140.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|++++ .++++++|.+++++++++|++|+++||+++||||+|
T Consensus       108 V~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gi~p~~~~-~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  185 (265)
T PRK05674        108 VQGAAFGGALGLISCCDMAIGA-DDAQFCLSEVRIGLAPAVIS-PFVVKAIGERAARRYALTAERFDGRRARELGLLAES  185 (265)
T ss_pred             EcCEEEechhhHhhhcCEEEEe-CCCEEeCcccccCCCcchhH-HHHHHHhCHHHHHHHHHhCcccCHHHHHHCCCccee
Confidence            7999999999999999999999 99999999999999987665 469999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEK-DLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++.+.+.+++++++..||.+++.+|+.++.....++++.+.. +...+...+.+++.++++.+|++|++|+
T Consensus       186 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~  260 (265)
T PRK05674        186 YP-AAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA  260 (265)
T ss_pred             cC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence            99 89999999999999999999999999999999877777777654 4456777889999999999999998874

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-37  Score=234.41  Aligned_cols=152  Identities=21%  Similarity=0.257  Sum_probs=145.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||++
T Consensus       105 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v  183 (260)
T PRK07659        105 IHGPAAGLGLSIALTADYVIAD-ISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEV  183 (260)
T ss_pred             ecCceecHHHHHHHhCCEEEEc-CCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHH
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++  +++.+.+.++++++++.|+.++..+|+.++.....++++.++.|...+...+.+++.++++.+|++||+|+
T Consensus       184 v~--~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~  256 (260)
T PRK07659        184 IG--GDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV  256 (260)
T ss_pred             hh--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence            94  67899999999999999999999999999988777889999999999999999999999999999999875

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=4.5e-37  Score=232.59  Aligned_cols=152  Identities=16%  Similarity=0.233  Sum_probs=137.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~v  179 (256)
T TIGR03210       101 VQGYAIGGGNVLVTICDLTIAS-EKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAV  179 (256)
T ss_pred             ECCEEehhhHHHHHhCCEEEEe-CCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceee
Confidence            7999999999999999999999 999999999999999888888999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| .+++.+.+.+++++|++.||.+++.+|++++........ ....+...+..++.+++.++++.+|++||+|+
T Consensus       180 v~-~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~-~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~  252 (256)
T TIGR03210       180 VP-HDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRG-IAGMGMYALKLYYDTAESREGVKAFQEKRKPE  252 (256)
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence            99 899999999999999999999999999999876432111 11123456677889999999999999999875

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=4.3e-37  Score=233.29  Aligned_cols=153  Identities=18%  Similarity=0.184  Sum_probs=142.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.++++++|+.++++++++|++++++||+++||||+|
T Consensus       103 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~v  181 (261)
T PRK11423        103 VEGSVWGGAFELIMSCDLIIAA-STSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHV  181 (261)
T ss_pred             EecEEechHHHHHHhCCEEEec-CCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI-SNL-MENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++++..+|.+++.+|+.++.... ... ....+.|...+..++.+++.++++.+|++||+|+
T Consensus       182 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~  257 (261)
T PRK11423        182 VE-VEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV  257 (261)
T ss_pred             cC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence            99 89999999999999999999999999999986543 233 4667777788889999999999999999998874

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=9.1e-37  Score=229.49  Aligned_cols=149  Identities=28%  Similarity=0.432  Sum_probs=145.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++.+|++++|++.+++++++|++++++||+++||||+|
T Consensus        97 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v  175 (245)
T PF00378_consen   97 VNGHAVGGGFELALACDFRIAA-EDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEV  175 (245)
T ss_dssp             ESSEEETHHHHHHHHSSEEEEE-TTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEE
T ss_pred             ccccccccccccccccceEEee-cccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS  151 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  151 (155)
                      ++ ++++.+.+.+++++++..|+.+++.+|+.++.......++..+.+...+...+.++++++++++|++|
T Consensus       176 ~~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  176 VP-DEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             ES-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             cC-chhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            99 78899999999999999999999999999999988889999999999999999999999999999987

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-36  Score=231.70  Aligned_cols=149  Identities=19%  Similarity=0.167  Sum_probs=135.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       113 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  191 (268)
T PRK07327        113 IHGPAVGAGLVAALLADISIAA-KDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLA  191 (268)
T ss_pred             EcCeeeehhhHHHHhCCEEEec-CCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS---NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~---~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++++++.+++++|++.||.+++.+|+.++.....   .++..+.    ....++.+++.++++.+|++||+|+
T Consensus       192 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~----~~~~~~~~~d~~eg~~af~ekr~p~  264 (268)
T PRK07327        192 VD-DDELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLA----LEFMGFSGPDVREGLASLREKRAPD  264 (268)
T ss_pred             cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHH----HHHHHccChhHHHHHHHHHhcCCCC
Confidence            99 899999999999999999999999999999875322   2333333    2335788999999999999999874

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-36  Score=229.21  Aligned_cols=148  Identities=16%  Similarity=0.260  Sum_probs=140.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus       104 v~G~a~GgG~~la~acD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v  182 (251)
T PRK06023        104 VDGLAIGIGTTIHLHCDLTFAS-PRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKI  182 (251)
T ss_pred             eCCceecHHHHHHHhCCEEEEe-CCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS  151 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  151 (155)
                      +| .+++.+++.+++++|+..||.+++.+|+.++... ..+...++.|...+..++.+++.++++++|++|
T Consensus       183 v~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        183 VD-EEAVEAETLKAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence            99 8999999999999999999999999999998764 467788888888889999999999999999874

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.1e-37  Score=230.33  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=141.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++   +++.+|++++|+.++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~Lal~cD~ria~-~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v  176 (249)
T PRK07938        101 VHGFCLGGGIGLVGNADVIVAS-DDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEV  176 (249)
T ss_pred             EcCEEeehHHHHHHhCCEEEEe-CCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEE
Confidence            7999999999999999999999 999999999999986   456789999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      +| ++++++.+.+++++|+..||.+++.+|+.++.....++++.++.|...+..++.+++.++++++|++||+|
T Consensus       177 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        177 VP-RDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            99 89999999999999999999999999999998776778888888888888999999999999999999876

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.7e-36  Score=235.87  Aligned_cols=152  Identities=19%  Similarity=0.235  Sum_probs=139.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       168 VnG~a~GGG~~LalacD~riA~-~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~v  246 (327)
T PLN02921        168 VAGYAVGGGHILHMVCDLTIAA-DNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTV  246 (327)
T ss_pred             ECCEEecHHHHHHHhCCEEEEe-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEE
Confidence            7999999999999999999999 999999999999999999889999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++++.+.+++++|+..+|.+++.+|++++..... .......+...+..++.+++.++++.+|++||+|+
T Consensus       247 v~-~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~  319 (327)
T PLN02921        247 VP-LDELEGETVKWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPD  319 (327)
T ss_pred             eC-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence            99 899999999999999999999999999999887543 33333444567788889999999999999998874

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.4e-37  Score=233.09  Aligned_cols=153  Identities=15%  Similarity=0.201  Sum_probs=138.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccC-ChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA-PFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++| +++++++|++++|..+|++++++|++++++||+++||||+
T Consensus       116 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~  194 (276)
T PRK05864        116 VNGPAIGGGLCLALAADIRVAS-SSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSR  194 (276)
T ss_pred             ECCEeehhHHHHHHhCCEEEee-CCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence            7999999999999999999999 9999999999999997 6788889999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS-NLMENKEKDLKNV-VDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ ++++++++.+++++|+..||.++..+|+.++..... ++++.+..|.... ...+.+++.++++.+|++||+|+
T Consensus       195 vv~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~  271 (276)
T PRK05864        195 QVP-DEQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV  271 (276)
T ss_pred             eeC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence            999 899999999999999999999999999999876543 5666666665432 23578999999999999998774

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-36  Score=229.85  Aligned_cols=150  Identities=19%  Similarity=0.238  Sum_probs=142.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|+.   ++++++++++|+.++++++++|++++++||+++||||++
T Consensus       104 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~v  179 (257)
T PRK06495        104 VNGPALGAGLGLVASCDIIVAS-ENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEAC  179 (257)
T ss_pred             ECCeeehhHHHHHHhCCEEEec-CCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCccee
Confidence            7999999999999999999999 999999999999997   446779999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++++..||.++..+|++++.....++++.++.|...+...+.+++.++++.+|++||+|+
T Consensus       180 v~-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~  253 (257)
T PRK06495        180 LP-PEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV  253 (257)
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence            99 899999999999999999999999999999988777888999999999999999999999999999999874

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-36  Score=229.95  Aligned_cols=149  Identities=21%  Similarity=0.315  Sum_probs=138.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeeccccc-ccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK-MGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~-~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++++|++||++ +|++|+++++++|++++|..++++++++|++++++||+++||||+
T Consensus       109 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~  187 (262)
T PRK06144        109 IAGACVGGGAAIAAACDLRIAT-PSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNE  187 (262)
T ss_pred             ECCeeeehHHHHHHhCCEEEec-CCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCe
Confidence            7999999999999999999999 99999999997 999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ ++++.+.+.+++++++..||.++..+|+.++......    ++.+...+...+.+++.++++.+|++||+|+
T Consensus       188 vv~-~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~----l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~  258 (262)
T PRK06144        188 VVE-DAALDARADALAELLAAHAPLTLRATKEALRRLRREG----LPDGDDLIRMCYMSEDFREGVEAFLEKRPPK  258 (262)
T ss_pred             ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcC----HHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence            999 7999999999999999999999999999998765443    3444567778899999999999999998874

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-36  Score=234.29  Aligned_cols=153  Identities=19%  Similarity=0.236  Sum_probs=139.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       120 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~v  198 (296)
T PRK08260        120 VNGPAVGVGATMTLAMDIRLAS-TAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSV  198 (296)
T ss_pred             ECCeeehHhHHHHHhCCEEEee-CCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATI-PGAARKLTKLMLREKTIS-NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++++.. +|.++..+|++++..... ........|...+..++.+++.++++.+|++||+|+
T Consensus       199 v~-~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~  274 (296)
T PRK08260        199 HP-PDELLPAARALAREIADNTSPVSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAV  274 (296)
T ss_pred             cC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCC
Confidence            99 899999999999999995 999999999999886431 112233456677888889999999999999998874

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-36  Score=229.49  Aligned_cols=151  Identities=15%  Similarity=0.230  Sum_probs=143.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|...+++++++|++++++||+++||||++
T Consensus       109 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~v  187 (262)
T PRK07509        109 LEGVCFGGGLQIALGADIRIAA-PDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV  187 (262)
T ss_pred             ECCeeecchHHHHHhCCEEEec-CCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhh
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .  +.+.+.+++++++..||.++..+|+.++.....++++.+..|...+...+.+++.++++.+|++||+|+
T Consensus       188 v~-~--~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~  259 (262)
T PRK07509        188 SD-D--PLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK  259 (262)
T ss_pred             hc-h--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence            97 3  678999999999999999999999999998777788888889999999999999999999999998874

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=3.3e-36  Score=232.56  Aligned_cols=153  Identities=14%  Similarity=0.195  Sum_probs=140.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||+++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||++
T Consensus       142 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~v  221 (302)
T PRK08321        142 VPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAV  221 (302)
T ss_pred             EcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEe
Confidence            79999999999999999999993489999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++++++.+++++|+..++.+++.+|++++.... ........|...+..++.+++.++++.+|++|++|+
T Consensus       222 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~  294 (302)
T PRK08321        222 VP-HAELETEALEWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPD  294 (302)
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence            99 89999999999999999999999999999987654 334445557778888999999999999999998864

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=7.9e-36  Score=225.16  Aligned_cols=150  Identities=19%  Similarity=0.279  Sum_probs=134.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|+.|+ +++++|++++|..++++++++|++++++||+++||||+|
T Consensus        96 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v  173 (251)
T TIGR03189        96 VRGQCLGGGLEVAAAGNLMFAA-PDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAV  173 (251)
T ss_pred             ecCeeeeHHHHHHHhCCEEEEc-CCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccee
Confidence            7999999999999999999999 99999999999999987 457799999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETF-LAQYATIPGAARKLTKLMLREKTISNLMENK-EKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~-a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ +++  +.+.++ +++++..||.+++.+|+.++.....++++.+ ..|...+..++.+++.++++++|++||+|+
T Consensus       174 ~~-~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  247 (251)
T TIGR03189       174 AE-DPE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL  247 (251)
T ss_pred             cC-cHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence            98 443  355565 6899999999999999999987666666655 356677888999999999999999999874

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-36  Score=225.05  Aligned_cols=147  Identities=21%  Similarity=0.290  Sum_probs=137.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|++++++++++|++++++||+++||||+|
T Consensus        93 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v  171 (243)
T PRK07854         93 INGPAIGAGLQLAMACDLRVVA-PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRI  171 (243)
T ss_pred             ecCcccccHHHHHHhCCEEEEc-CCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccc
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+    .+.+++++|++.||.++..+|+.++..  ..+++.++.|...+..++.+++.++++.+|++|++|+
T Consensus       172 ~~-~~----~a~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  239 (243)
T PRK07854        172 GT-LA----DAQAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK  239 (243)
T ss_pred             cC-HH----HHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence            76 32    789999999999999999999999875  4577888888888999999999999999999998764

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.6e-35  Score=223.32  Aligned_cols=147  Identities=19%  Similarity=0.207  Sum_probs=142.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~v  179 (249)
T PRK07110        101 MQGHAIGGGLVLGLYADIVVLS-RESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPV  179 (249)
T ss_pred             ecCceechHHHHHHhCCEEEEe-CCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEE
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL  149 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  149 (155)
                      ++ ++++.+.+.++++++++.|+.+++.+|+.++.....++++.++.|...+...+.+++.++++.+..
T Consensus       180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        180 LP-RAEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence            99 899999999999999999999999999999999888899999999999999999999999998764

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.6e-36  Score=225.42  Aligned_cols=147  Identities=22%  Similarity=0.246  Sum_probs=140.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+|
T Consensus       102 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v  180 (249)
T PRK05870        102 VNGAAVGAGLNLALAADVRIAG-PKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMV  180 (249)
T ss_pred             ECCEeEchhHHHHHhCCEEEEc-CCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHH
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI-SNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS  151 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  151 (155)
                      +   +++.+.+.+++++++..||.+++.+|+.++.... .++++.++.|...+...+.+++.++++.+|+++
T Consensus       181 v---~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        181 A---DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             H---hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence            9   4688999999999999999999999999998876 678888999999999999999999999999874

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.4e-35  Score=220.32  Aligned_cols=149  Identities=17%  Similarity=0.188  Sum_probs=139.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||.++|++|++++++++++++|. ++++++++|++++++||+++||||++
T Consensus        96 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~  173 (248)
T PRK06072         96 INGVTAGACIGIALSTDFKFAS-RDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS  173 (248)
T ss_pred             ECCeeehHHHHHHHhCCEEEEc-CCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence            7999999999999999999999 999999999999999999999999999996 89999999999999999999999953


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                       +   ++.+.+.++++++++.||.++..+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       174 -~---~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  244 (248)
T PRK06072        174 -E---DPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK  244 (248)
T ss_pred             -c---hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence             3   4678899999999999999999999999988777888899999999999999999999999999999874

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.6e-35  Score=224.88  Aligned_cols=149  Identities=17%  Similarity=0.185  Sum_probs=137.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccc-cccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKM-GIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~-Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++ |+++  ++++  .+++|..+|++++++|++++++||+++||||+
T Consensus       119 V~G~a~GgG~~LalacD~ria~-~~A~f~~pe~~l~G~~~--~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~  193 (298)
T PRK12478        119 VHGWCVGGASDYALCADIVIAS-DDAVIGTPYSRMWGAYL--TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINE  193 (298)
T ss_pred             EccEEehhHHHHHHHCCEEEEc-CCcEEeccccccccCCc--hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence            7999999999999999999999 999999999996 8874  2222  35699999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCHHHH--------HHHHHHHh
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI-SNLMENKEKDLKNVVDLITSPQVQ--------KGLGLYLQ  150 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~--------~~~~~~~~  150 (155)
                      ||+ ++++++++.+++++|+..||.+++.+|++++.... .++++.++.|...+..++.++|.+        +++.+|++
T Consensus       194 vv~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~e  272 (298)
T PRK12478        194 AVP-FERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVE  272 (298)
T ss_pred             ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Confidence            999 89999999999999999999999999999998766 358999999999999999999997        59999999


Q ss_pred             hccCC
Q psy15240        151 SLKKK  155 (155)
Q Consensus       151 ~~~~k  155 (155)
                      ||+|+
T Consensus       273 kR~p~  277 (298)
T PRK12478        273 RRDGP  277 (298)
T ss_pred             hcCCc
Confidence            99874

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=6.4e-35  Score=220.71  Aligned_cols=149  Identities=15%  Similarity=0.227  Sum_probs=136.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++ ..+|++++|..++++++++|++++++||+++||||+|
T Consensus       103 v~G~a~GgG~~lala~D~~ia~-~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v  180 (255)
T PRK07112        103 VRGKVNAGGIGFVAASDIVIAD-ETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAY  180 (255)
T ss_pred             EecEEEcchhHHHHcCCEEEEc-CCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCcee
Confidence            7999999999999999999999 9999999999999998764 5689999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ +++.  .+.+++++++..+|.++..+|+.++.. ...+.+.++.|.......+.+++.++++.+|++||+|+
T Consensus       181 v~-~~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~  251 (255)
T PRK07112        181 GA-NSDT--LLRKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP  251 (255)
T ss_pred             cC-cHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence            99 4442  578899999999999999999999875 44678888889888999999999999999999998864

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-35  Score=223.02  Aligned_cols=150  Identities=18%  Similarity=0.326  Sum_probs=140.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++ ..++++++++|++++++||+++||||++
T Consensus       108 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v  185 (260)
T PRK07827        108 IDGHVRAGGFGLVGACDIVVAG-PESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAA  185 (260)
T ss_pred             EcCeeecchhhHHHhCCEEEEc-CCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence            7999999999999999999999 9999999999999999999999998764 5689999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++   ++++.+.++++++++.|+.++..+|+.++.....++++.++.+...+..++.+++.++++.+|++|++|+
T Consensus       186 ~~---~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~  257 (260)
T PRK07827        186 AD---DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR  257 (260)
T ss_pred             hH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence            75   4889999999999999999999999999998877888899999999999999999999999999998874

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-34  Score=219.50  Aligned_cols=150  Identities=17%  Similarity=0.234  Sum_probs=141.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||.++|++|+++++++|++++|+.++++++++|++++++||+++||||++
T Consensus       101 V~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  179 (258)
T PRK06190        101 INGAAVTGGLELALACDILIAS-ERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEV  179 (258)
T ss_pred             ECCEeecHHHHHHHhCCEEEEe-CCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhhc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITS---PQVQKGLGLYLQSL  152 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~  152 (155)
                      ++ ++++++.+.++++++++.||.+++.+|++++.....++++.++.|...+..++.+   ....+..++|+.+.
T Consensus       180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~  253 (258)
T PRK06190        180 VP-HDELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARG  253 (258)
T ss_pred             cC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhh
Confidence            99 8999999999999999999999999999999887778999999999999999988   55677777777653

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.1e-34  Score=219.70  Aligned_cols=151  Identities=28%  Similarity=0.430  Sum_probs=142.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+|||+ ++++|++||+++|++|+.|++++|++++|..++.+++++|++++++||.++||||++
T Consensus       105 v~G~a~GgG~eLal~~D~ria~-~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v  183 (257)
T COG1024         105 VNGYALGGGLELALACDIRIAA-EDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEV  183 (257)
T ss_pred             EcceEeechhhhhhcCCeEEec-CCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCee
Confidence            7999999999999999999999 999999999999999977999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      +++.+++++.+.+++++++. +|.++..+|+.++......+++....+...+...+.+++.+|++.+|++ |++
T Consensus       184 v~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p  255 (257)
T COG1024         184 VPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP  255 (257)
T ss_pred             eCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence            99558999999999999999 9999999999999987766888888888888888899999999999999 765

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=6.7e-35  Score=238.75  Aligned_cols=153  Identities=14%  Similarity=0.126  Sum_probs=146.1

Q ss_pred             CCcccchHH-HHHHhhcceeee-------ecCceeeecccccccccCChhHHHHHHHhh-CHHHH--HHHHhcCCCCCHH
Q psy15240          1 MKGHAPGAG-CQFAMSCEYRIM-------VGPKYTIGLNETKMGIIAPFWFVDTMVHTL-GPRQT--ELALTSGKMFTSA   69 (155)
Q Consensus         1 v~G~a~GgG-~~la~~cD~~ia-------~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~-g~~~a--~~l~l~g~~~~a~   69 (155)
                      =||+|+||| ++|+++||+||+       + ++++|++||+++|++|+++++++|++++ |.+++  ++++++|++++++
T Consensus       373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~-~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~  451 (546)
T TIGR03222       373 EPGSCFAGTLAELAFAADRSYMLAFPDNND-PEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAE  451 (546)
T ss_pred             CCCeEeHHHHHHHHHhCceeeecCCCCCCC-CCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHH
Confidence            079999999 999999999999       8 9999999999999999999999999998 99988  5599999999999


Q ss_pred             HHHHcCccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCHHHHH---HH
Q psy15240         70 EALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMEN-KEKDLKNVVDLITSPQVQK---GL  145 (155)
Q Consensus        70 eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~---~~  145 (155)
                      ||+++||||+|++ ++++++.+.+++++|++.+|.+++.+|+.++.....+++.. +..|...+..++.++|.++   ++
T Consensus       452 eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~  530 (546)
T TIGR03222       452 EAERLGLVTAAPD-DIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGAL  530 (546)
T ss_pred             HHHHcCCcccccC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHH
Confidence            9999999999999 89999999999999999999999999999999988889999 9999999999999999999   99


Q ss_pred             HHHHhhccCC
Q psy15240        146 GLYLQSLKKK  155 (155)
Q Consensus       146 ~~~~~~~~~k  155 (155)
                      ++|++||+|+
T Consensus       531 ~af~ekr~p~  540 (546)
T TIGR03222       531 KVYGSGKKAQ  540 (546)
T ss_pred             HHHccCCCCC
Confidence            9999999874

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=4.1e-35  Score=229.74  Aligned_cols=151  Identities=20%  Similarity=0.226  Sum_probs=142.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|+++.| ..+++++++|++++++||+++||||++
T Consensus       107 VnG~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~v  184 (342)
T PRK05617        107 MDGIVMGGGVGISAHGSHRIVT-ERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHF  184 (342)
T ss_pred             EcCEEEccHhHHhhhCCEEEEc-CCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCccee
Confidence            7999999999999999999999 99999999999999999999999999877 689999999999999999999999999


Q ss_pred             cCChhHHHHH--------------------------------------------------------------HHHHHHHH
Q psy15240         81 VTSEEEAITR--------------------------------------------------------------AETFLAQY   98 (155)
Q Consensus        81 ~~~~~~~~~~--------------------------------------------------------------~~~~a~~l   98 (155)
                      ++ ++++.+.                                                              +.+++++|
T Consensus       185 v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i  263 (342)
T PRK05617        185 VP-SADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTL  263 (342)
T ss_pred             cC-HHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHH
Confidence            99 8888876                                                              88999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hh-ccC
Q psy15240         99 ATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL-QS-LKK  154 (155)
Q Consensus        99 ~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~-~~~  154 (155)
                      ++.+|.+++.+|++++.....++++.++.|...+..++.++|.++++++|+ +| |+|
T Consensus       264 ~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p  321 (342)
T PRK05617        264 RSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP  321 (342)
T ss_pred             HhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence            999999999999999988777899999999999999999999999999996 65 655

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.4e-34  Score=236.06  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=146.3

Q ss_pred             CC-cccchHH-HHHHhhcceeeeec------CceeeecccccccccCChhHHHHHHHh-hCHHHHHHH--HhcCCCCCHH
Q psy15240          1 MK-GHAPGAG-CQFAMSCEYRIMVG------PKYTIGLNETKMGIIAPFWFVDTMVHT-LGPRQTELA--LTSGKMFTSA   69 (155)
Q Consensus         1 v~-G~a~GgG-~~la~~cD~~ia~~------~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~g~~~a~~l--~l~g~~~~a~   69 (155)
                      || |+|+||| ++|+++||+||++.      ++++|++||+++|++|+++++++|+++ +|.++|+++  +++|++++++
T Consensus       376 V~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~  455 (550)
T PRK08184        376 IEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDAD  455 (550)
T ss_pred             ECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHH
Confidence            55 9999999 99999999999992      789999999999999999999999998 699999997  5899999999


Q ss_pred             HHHHcCccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCHHHHH---HH
Q psy15240         70 EALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMEN-KEKDLKNVVDLITSPQVQK---GL  145 (155)
Q Consensus        70 eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~---~~  145 (155)
                      ||+++||||+|+| ++++++++.++++++++.||.+++.+|+.++.....++++. +..|...+..++.++|.++   ++
T Consensus       456 eA~~~GLv~~vv~-~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~  534 (550)
T PRK08184        456 AAEELGLVTAAPD-DIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGAL  534 (550)
T ss_pred             HHHHcCCcccccC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHH
Confidence            9999999999999 89999999999999999999999999999999988899999 9999999999999999999   99


Q ss_pred             HHHHhhccCC
Q psy15240        146 GLYLQSLKKK  155 (155)
Q Consensus       146 ~~~~~~~~~k  155 (155)
                      ++|++||+|+
T Consensus       535 ~af~ekr~~~  544 (550)
T PRK08184        535 KVYGTGQKAQ  544 (550)
T ss_pred             HHhccCCCCC
Confidence            9999999874

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2e-33  Score=222.69  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=138.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++|. .+++|+++|++++++||+++||||+|
T Consensus       112 V~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~v  189 (379)
T PLN02874        112 VHGLVMGGGAGLMVPMKFRVVT-EKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHF  189 (379)
T ss_pred             ecCeEEecHHHHHHhCCeEEEe-CCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEE
Confidence            7999999999999999999999 999999999999999999999999999885 88999999999999999999999999


Q ss_pred             cCChhHHHH---H----------------------------------------------------------------HHH
Q psy15240         81 VTSEEEAIT---R----------------------------------------------------------------AET   93 (155)
Q Consensus        81 ~~~~~~~~~---~----------------------------------------------------------------~~~   93 (155)
                      |+ .+++.+   +                                                                +.+
T Consensus       190 v~-~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~  268 (379)
T PLN02874        190 VP-SEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKE  268 (379)
T ss_pred             eC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHH
Confidence            99 777765   3                                                                237


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH-hh-ccCC
Q psy15240         94 FLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLIT---SPQVQKGLGLYL-QS-LKKK  155 (155)
Q Consensus        94 ~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~-~~-~~~k  155 (155)
                      +++.|++.+|.+++.+|++++.....++++.++.|.......+.   ++|++|++++|+ +| |+|+
T Consensus       269 ~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~  335 (379)
T PLN02874        269 TLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPK  335 (379)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCC
Confidence            88999999999999999999988777899999998888777777   899999999997 66 6664

>KOG0016|consensus

Probab=100.00  E-value=1.2e-32  Score=202.59  Aligned_cols=152  Identities=20%  Similarity=0.223  Sum_probs=148.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||||+|.|..+...||+|||+ ++++|..|+.++|..|++++++++|+++|...|.++++.|++++|+||.+.|||++|
T Consensus       114 vNGPAIGlgasil~lcD~V~A~-Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVski  192 (266)
T KOG0016|consen  114 VNGPAIGLGASILPLCDYVWAS-DKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKI  192 (266)
T ss_pred             ecCCccchhhHHhhhhheEEec-cceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhh
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      ++ .+.+.+.+...++++++.+|.+++.+|+++|......+..+.+.|+......|.++|..+++.+|+.+..+
T Consensus       193 f~-~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~~k  265 (266)
T KOG0016|consen  193 FP-AETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKKRK  265 (266)
T ss_pred             cC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccccc
Confidence            99 89999999999999999999999999999999988999999999999999999999999999999988654

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=5.5e-32  Score=207.29  Aligned_cols=147  Identities=18%  Similarity=0.201  Sum_probs=127.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.++++++++|++++++||.++||||++
T Consensus       128 V~G~a~GgG~~LalacD~ria~-~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~v  206 (287)
T PRK08788        128 VQGDALGGGFEAALSHHTIIAE-RGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVL  206 (287)
T ss_pred             ECCeeehHHHHHHHhCCEEEec-CCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITS-PQVQKGLGLYLQ  150 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~  150 (155)
                      +| .+++.+.+.+++++|+.. |.+...+|+..+.....++++.++.+...+..++.. ..-++.|+.|..
T Consensus       207 v~-~~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (287)
T PRK08788        207 VE-DGQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR  275 (287)
T ss_pred             cC-chHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            99 799999999999999987 666677777766665556777777776666654433 334556666654

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=99.98  E-value=6.5e-32  Score=201.42  Aligned_cols=129  Identities=29%  Similarity=0.447  Sum_probs=121.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++|||||++ ++ ++|++||+++|++|+.++..++++++|...+++++++|++++++||+++||||+
T Consensus        98 v~G~a~GgG~~lal~~D~rva~-~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~  176 (229)
T PRK06213         98 CTGHAIAKGAFLLLSADYRIGV-HGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDE  176 (229)
T ss_pred             EcCeeeHHHHHHHHhCCeeeEe-cCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCcee
Confidence            6999999999999999999999 88 999999999999988888888999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKN  131 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~  131 (155)
                      |++ ++++.+.+.+++++++..++.++..+|+.++.....++.+.++.|...
T Consensus       177 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~  227 (229)
T PRK06213        177 VVP-PEQLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAE  227 (229)
T ss_pred             ccC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence            999 899999999999999999999999999999998877888888777654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.98  E-value=9.4e-32  Score=227.54  Aligned_cols=151  Identities=26%  Similarity=0.337  Sum_probs=138.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       109 v~G~a~GgG~~LAlacD~ria~-~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~v  187 (715)
T PRK11730        109 INGYALGGGCECVLATDYRVAS-PDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAV  187 (715)
T ss_pred             ECCEeehHHHHHHHhCCEEEEc-CCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEe
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcC------------ChH---------HHHHHHH------------------HHHHHHHHhH
Q psy15240         81 VTSEEEAITRAETFLAQYATI------------PGA---------ARKLTKL------------------MLREKTISNL  121 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~------------~~~---------a~~~~K~------------------~l~~~~~~~~  121 (155)
                      ++ .+++.+.+.+++++++..            +|.         +++.+|+                  .++.....++
T Consensus       188 v~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~i~~~~~~~~  266 (715)
T PRK11730        188 VA-PEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGR  266 (715)
T ss_pred             cC-HHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHhcCCH
Confidence            99 899999999999999965            344         4466774                  4566666678


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240        122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus       122 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      ++.++.|...+..++.+++.++++.+|++++.
T Consensus       267 ~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~  298 (715)
T PRK11730        267 DEALELEAKGFVKLAKTNVARALVGIFLNDQY  298 (715)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998754

>PRK05869 enoyl-CoA hydratase; Validated

Probab=99.98  E-value=1e-31  Score=199.42  Aligned_cols=115  Identities=24%  Similarity=0.373  Sum_probs=111.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.+|++++|..++++++++|++++++||+++||||++
T Consensus       106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~v  184 (222)
T PRK05869        106 ITGYALGAGLTLALAADWRVSG-DNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEM  184 (222)
T ss_pred             EcCEeecHHHHHHHhCCEEEec-CCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKT  117 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~  117 (155)
                      ++ .+++.+++.+++++++..||.+++.+|+.++...
T Consensus       185 v~-~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~  220 (222)
T PRK05869        185 VA-PDDVYDAAAAWARRFLDGPPHALAAAKAGISDVY  220 (222)
T ss_pred             eC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99 8999999999999999999999999999998764

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.97  E-value=2.7e-31  Score=224.64  Aligned_cols=150  Identities=18%  Similarity=0.300  Sum_probs=139.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc--eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLID   78 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~   78 (155)
                      |||+|+|||++|+++|||||++ ++  ++|++||+++|++|+++++++|++++|..+|++|+++|++++++||+++||||
T Consensus       108 V~G~a~GgG~~LalacD~ria~-~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~  186 (708)
T PRK11154        108 IHGACLGGGLELALACHYRVCT-DDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD  186 (708)
T ss_pred             ECCeeechHHHHHHhCCEEEEe-CCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCc
Confidence            7999999999999999999999 76  59999999999999999999999999999999999999999999999999999


Q ss_pred             eecCChhHHHHHHHHHHHH-------------HhcCChH----------------------HHHHHHHHHHHHHHHhHHH
Q psy15240         79 EEVTSEEEAITRAETFLAQ-------------YATIPGA----------------------ARKLTKLMLREKTISNLME  123 (155)
Q Consensus        79 ~v~~~~~~~~~~~~~~a~~-------------l~~~~~~----------------------a~~~~K~~l~~~~~~~~~~  123 (155)
                      ++++ .+++.+.+.+++++             +++.+|.                      ++..+|++++.....++++
T Consensus       187 ~vv~-~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~  265 (708)
T PRK11154        187 DVVP-HSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSS  265 (708)
T ss_pred             EecC-hHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHH
Confidence            9999 89999999999988             4555553                      7889999999988778999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240        124 NKEKDLKNVVDLITSPQVQKGLGLYLQSL  152 (155)
Q Consensus       124 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  152 (155)
                      .++.|...+..++.+++.++++.+|+..+
T Consensus       266 ~l~~E~~~~~~~~~s~~~~~~~~aF~~~~  294 (708)
T PRK11154        266 GYEAEARAFGELAMTPESAALRSIFFATT  294 (708)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998654

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=99.97  E-value=5.1e-31  Score=202.45  Aligned_cols=136  Identities=18%  Similarity=0.203  Sum_probs=125.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++ + .+..++++++|+.++++++++|++++++||+++||||+|
T Consensus       125 VnG~a~GgG~~lalacD~ria~-e~a~f~~pe~~lGl~-~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~v  201 (288)
T PRK08290        125 VQGACIAGGLMLAWVCDLIVAS-DDAFFSDPVVRMGIP-G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRV  201 (288)
T ss_pred             ECCEeeHHHHHHHHhCCEEEee-CCCEecCcccccCcC-c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEe
Confidence            7999999999999999999999 999999999999994 4 446778999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHh-cCHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS-NLMENKEKDLKNVVDLI-TSPQ  140 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~~-~~~~  140 (155)
                      ++ .+++++.+.+++++|+..|+.+++.+|+.++..... .+++.+..|.......+ .+|+
T Consensus       202 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        202 VP-RDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence            99 899999999999999999999999999999988764 68888888888888888 6676

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.97  E-value=1.5e-30  Score=219.86  Aligned_cols=150  Identities=16%  Similarity=0.297  Sum_probs=136.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc--eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLID   78 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~   78 (155)
                      |||+|+|||++|+++|||||++ ++  ++|++||+++|++|+++++++|++++|..++++++++|+++++++|+++||||
T Consensus       103 VnG~a~GgG~~LaLacD~ria~-~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~  181 (699)
T TIGR02440       103 IHGACLGGGLELALACHSRVCS-DDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD  181 (699)
T ss_pred             ECCEeecHHHHHHHhCCEEEEc-CCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCc
Confidence            7999999999999999999999 65  79999999999999999999999999999999999999999999999999999


Q ss_pred             eecCChhHHHHHHHHHHH-------------HHhcCChHH----------------------HHHHHHHHHHHHHHhHHH
Q psy15240         79 EEVTSEEEAITRAETFLA-------------QYATIPGAA----------------------RKLTKLMLREKTISNLME  123 (155)
Q Consensus        79 ~v~~~~~~~~~~~~~~a~-------------~l~~~~~~a----------------------~~~~K~~l~~~~~~~~~~  123 (155)
                      +|++ ++++++.+.++++             .++..+|.+                      ...+|+.++.....++++
T Consensus       182 ~vv~-~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~  260 (699)
T TIGR02440       182 DVVP-QSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQK  260 (699)
T ss_pred             EecC-hhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHH
Confidence            9999 8999999999998             566666555                      445566688877778999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240        124 NKEKDLKNVVDLITSPQVQKGLGLYLQSL  152 (155)
Q Consensus       124 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  152 (155)
                      .++.|.+.+..++.+++.++.+.+|+..+
T Consensus       261 ~l~~E~~~~~~~~~s~~~~~~~~~f~~~~  289 (699)
T TIGR02440       261 GLDAEARAFGELVMTPESAALRSIFFATT  289 (699)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999997643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG1679|consensus

Probab=99.97  E-value=6.7e-32  Score=194.12  Aligned_cols=153  Identities=21%  Similarity=0.312  Sum_probs=145.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |+|.|.|||++|+++||+|+|+ +++.|+++|.++++.|+.|++++||+.+|.+.++++++|++.+++.||...||||.+
T Consensus       131 idG~ALGGGLElALACDiRva~-s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhv  209 (291)
T KOG1679|consen  131 IDGAALGGGLELALACDIRVAA-SSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHV  209 (291)
T ss_pred             hcchhcccchhhhhhccceehh-hhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHH
Confidence            6899999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChh----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEE----EAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~----~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |+ ..    ...+++.++++++....|.++++.|..++...+.++...+..|..-....+.+.|..+++.+|.+||+|+
T Consensus       210 v~-qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~  287 (291)
T KOG1679|consen  210 VE-QNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPE  287 (291)
T ss_pred             Hh-cCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Confidence            98 54    7778899999999999999999999999999999999999988888888899999999999999999874

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.97  E-value=2.4e-30  Score=205.53  Aligned_cols=143  Identities=16%  Similarity=0.130  Sum_probs=129.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++|. .+++|++||++++++||+++||||++
T Consensus       140 v~G~a~GGG~~Lal~cD~rvat-e~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~v  217 (401)
T PLN02157        140 LNGVTMGGGTGVSIPGTFRVAT-DRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHY  217 (401)
T ss_pred             EeCeEeehhHHHHHhCCEEEEe-CCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEE
Confidence            6999999999999999999999 999999999999999999999999999996 79999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLY  148 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  148 (155)
                      || .+++ +.+.+++.+++..+|.++..+|+.++... ......+..+......++.+++.++.+.+|
T Consensus       218 Vp-~~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~~d~~ei~~al  282 (401)
T PLN02157        218 IR-SEEI-PVMEEQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSHDTVEEIIDSL  282 (401)
T ss_pred             eC-HhHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            99 7888 57779999999999999999999997652 234455666677788889999999999998

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=99.97  E-value=1e-29  Score=196.48  Aligned_cols=113  Identities=25%  Similarity=0.361  Sum_probs=105.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|..|+.   ..+++++|+++|++++++|++++++||+++||||++
T Consensus       134 V~G~a~GgG~~lalacD~~ias-~~a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~v  209 (302)
T PRK08272        134 VHGYCVAGGTDIALHCDQVIAA-DDAKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEA  209 (302)
T ss_pred             EccEeehhhHHHHHhCCEEEEe-CCCEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCcee
Confidence            7999999999999999999999 999999999998655543   357889999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI  118 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~  118 (155)
                      +| .+++++.+.+++++|+..||.++..+|+.++..+.
T Consensus       210 v~-~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~  246 (302)
T PRK08272        210 VP-PEELDERTERLVERIAAVPVNQLAMVKLAVNSALL  246 (302)
T ss_pred             cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99 89999999999999999999999999999998765

>KOG1681|consensus

Probab=99.97  E-value=1.3e-30  Score=188.83  Aligned_cols=153  Identities=19%  Similarity=0.230  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhC-HHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g-~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||+.|.-+||+|||+ +++.|+..|+.+|+..+.|...+||..+| .+.++++.+|++.|++.||++.|||++
T Consensus       133 vHg~CiGagvDLiTAcDIRycs-qDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSr  211 (292)
T KOG1681|consen  133 VHGACIGAGVDLITACDIRYCS-QDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSR  211 (292)
T ss_pred             HHhhhccccccceeecceeeec-ccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchh
Confidence            6999999999999999999999 99999999999999999999999999999 699999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      |++|.++++..+...|..|+.++|.++..+|..|+...+.+.++.+.+-..+...++.+.|..+...+-+.|+|+
T Consensus       212 vf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~  286 (292)
T KOG1681|consen  212 VFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKT  286 (292)
T ss_pred             hcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999988887664

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=99.96  E-value=2.9e-29  Score=195.11  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=97.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       131 VnG~AiGGGleLALaCDlrIAs-e~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~V  209 (360)
T TIGR03200       131 VNGMRIGGGQEIGMAADFTIAQ-DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDV  209 (360)
T ss_pred             ECCEeeeHHHHHHHhCCEEEEc-CCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChhee
Confidence            7999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHH------------HHHHHHHHHHHhcCChH--HHHHHHHHHHH
Q psy15240         81 VTSEEEA------------ITRAETFLAQYATIPGA--ARKLTKLMLRE  115 (155)
Q Consensus        81 ~~~~~~~------------~~~~~~~a~~l~~~~~~--a~~~~K~~l~~  115 (155)
                      +| .+++            ++.+.++.+.+...++.  ++...|.+++.
T Consensus       210 Vp-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  257 (360)
T TIGR03200       210 VP-ALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ  257 (360)
T ss_pred             cC-chhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence            99 6776            55555555555554444  55555555554

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=99.96  E-value=1.3e-28  Score=184.73  Aligned_cols=118  Identities=23%  Similarity=0.352  Sum_probs=106.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHH-HHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a-~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||+++++++|++||.++|+++|.+++.++++++|..++ ++++++|++++++||+++||||+
T Consensus       101 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~  180 (239)
T PLN02267        101 VTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDS  180 (239)
T ss_pred             ECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcce
Confidence            79999999999999999999983467999999999997555568899999999999 69999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHH
Q psy15240         80 EVTSEEEAITRAETFLAQYATI--PGAARKLTKLMLREKTI  118 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~--~~~a~~~~K~~l~~~~~  118 (155)
                      ++++.+++.+.+.++++++++.  ++.++..+|+.++....
T Consensus       181 vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~  221 (239)
T PLN02267        181 AHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVC  221 (239)
T ss_pred             ecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHH
Confidence            9984578999999999999987  66789999999987754

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.95  E-value=8.4e-28  Score=203.33  Aligned_cols=151  Identities=25%  Similarity=0.318  Sum_probs=128.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..+|++++++|+++++++|+++||||++
T Consensus       109 i~G~alGGGleLalacD~ria~-~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~v  187 (714)
T TIGR02437       109 INGIALGGGCECVLATDFRIAD-DTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAV  187 (714)
T ss_pred             ECCeeecHHHHHHHhCCEEEEe-CCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCC--------h-----------HH--HHHH------------------HHHHHHHHHHhH
Q psy15240         81 VTSEEEAITRAETFLAQYATIP--------G-----------AA--RKLT------------------KLMLREKTISNL  121 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~--------~-----------~a--~~~~------------------K~~l~~~~~~~~  121 (155)
                      ++ .+++.+.+.++++++....        +           ..  ....                  -+.++.....++
T Consensus       188 v~-~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~  266 (714)
T TIGR02437       188 VT-ADKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGR  266 (714)
T ss_pred             eC-hhHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCH
Confidence            99 8999999999997744320        0           00  1111                  112233333467


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240        122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus       122 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      ++.+..|.+.+.+++.+++.+..+..|+.++.
T Consensus       267 ~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~  298 (714)
T TIGR02437       267 DKALEIEAKGFVKLAKTSEAKALIGLFLNDQY  298 (714)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHh
Confidence            89999999999999999999999999987543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.95  E-value=5.5e-27  Score=198.85  Aligned_cols=149  Identities=21%  Similarity=0.236  Sum_probs=125.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc--eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLID   78 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~   78 (155)
                      |||+|+|||++|+++|||||++ ++  ++|++||+++|+.|++|++++||+++|..+|++++++|+++++++|+++||||
T Consensus       115 v~G~a~GgG~eLALacD~ria~-~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd  193 (737)
T TIGR02441       115 ISGSCLGGGLELALACHYRIAT-KDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVD  193 (737)
T ss_pred             ECCEeecHHHHHHHhCCEEEEc-CCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCe
Confidence            7999999999999999999999 76  58999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCh-------------hHHHHHHHHHHHHHhcCC----------hH-------------------------------
Q psy15240         79 EEVTSE-------------EEAITRAETFLAQYATIP----------GA-------------------------------  104 (155)
Q Consensus        79 ~v~~~~-------------~~~~~~~~~~a~~l~~~~----------~~-------------------------------  104 (155)
                      +|++ +             +++.+.+.+++..++..+          +.                               
T Consensus       194 ~vv~-~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  272 (737)
T TIGR02441       194 QLVD-PLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLY  272 (737)
T ss_pred             EecC-CcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhHHHHHHHHHHHHHHhccCCC
Confidence            9999 4             668888888887764311          00                               


Q ss_pred             -HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240        105 -ARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS  151 (155)
Q Consensus       105 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  151 (155)
                       +...+-+.+......++++.+..|.+.+.+++.+++.+.-+..|+..
T Consensus       273 ~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~  320 (737)
T TIGR02441       273 PAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQ  320 (737)
T ss_pred             ccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             01122223334434468899999999999999999999998888754

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=99.95  E-value=6.5e-27  Score=185.25  Aligned_cols=147  Identities=17%  Similarity=0.205  Sum_probs=121.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+.|++++|++++|. .+++|+++|+++++++|+++||||++
T Consensus       112 v~G~a~GGG~~Lal~~D~rvat-e~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~v  189 (381)
T PLN02988        112 LNGIVMGGGAGVSVHGRFRIAT-ENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHF  189 (381)
T ss_pred             ecCeEeehhhHHhhcCCeEEEc-CCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEe
Confidence            6999999999999999999999 999999999999999999999999999997 58899999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHH----------------------------------------------------------------
Q psy15240         81 VTSEEEAITRAETFLA----------------------------------------------------------------   96 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~----------------------------------------------------------------   96 (155)
                      |+ .+++.+.+.++++                                                                
T Consensus       190 v~-~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~i~~~L~~~~~~~~~~wa~~  268 (381)
T PLN02988        190 VP-STRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEEIISALEREATQEADGWISA  268 (381)
T ss_pred             cC-HhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHhhccccccHHHHH
Confidence            99 6766665544431                                                                


Q ss_pred             ---HHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHh
Q psy15240         97 ---QYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLIT---SPQVQKGLGLYLQ  150 (155)
Q Consensus        97 ---~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~  150 (155)
                         .|.+.+|.++..+.+++++....++.+++..|......++.   ++|+.||+++-+-
T Consensus       269 ~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~Li  328 (381)
T PLN02988        269 TIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILV  328 (381)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhc
Confidence               12223355566666666666556777888888888888776   5889999988764

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.93  E-value=4.1e-25  Score=175.77  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=123.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+.|++++|+++.|.. ++++++||+++++++|.++||+|++
T Consensus       145 v~G~amGGG~gLal~~D~rVat-e~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~  222 (407)
T PLN02851        145 MDGITMGCGAGISIPGMFRVVT-DKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHY  222 (407)
T ss_pred             EcCEEeeHHHHHHHhCCEEEEe-CCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceee
Confidence            6999999999999999999999 9999999999999999999999999999985 8999999999999999999999999


Q ss_pred             cCChhHHHHHHHH----------------------------------------------------------------HH-
Q psy15240         81 VTSEEEAITRAET----------------------------------------------------------------FL-   95 (155)
Q Consensus        81 ~~~~~~~~~~~~~----------------------------------------------------------------~a-   95 (155)
                      ++ .+++. .+.+                                                                |+ 
T Consensus       223 v~-~~~l~-~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~~~~~~~~~wa~  300 (407)
T PLN02851        223 CL-NARLP-LIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCK  300 (407)
T ss_pred             cC-HhhHH-HHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHhcccccchHHHH
Confidence            98 44331 1111                                                                11 


Q ss_pred             ---HHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHh
Q psy15240         96 ---AQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLI---TSPQVQKGLGLYLQ  150 (155)
Q Consensus        96 ---~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~  150 (155)
                         +.|.+.+|.++..+-++++.....++.++++.|......++   .++|+.||+++.+-
T Consensus       301 ~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LI  361 (407)
T PLN02851        301 KALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLV  361 (407)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhc
Confidence               12334456678888888888777789999999999888877   48999999999865

>KOG1682|consensus

Probab=99.93  E-value=2.3e-25  Score=159.42  Aligned_cols=152  Identities=17%  Similarity=0.229  Sum_probs=142.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||.|..+||+|...||++||+ .++.|..|...+|++-...+ .-|.|.++...+.+|++||+|++++||+..|||+++
T Consensus       132 VNG~AaAAGcQLVaSCD~vVa~-k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskv  209 (287)
T KOG1682|consen  132 VNGYAAAAGCQLVASCDMVVAT-KNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPITGEEALISGLVSKV  209 (287)
T ss_pred             ecchhhhccceEEEeeeEEEEe-cCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhc
Confidence            7999999999999999999999 99999999999999865554 358899999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      || .++++.+++++++.|-..+...+..-|+..+.....+-.+++.+..+.+...+.-.|.+|++.+|++||.+.
T Consensus       210 Vp-~~el~~e~~~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~  283 (287)
T KOG1682|consen  210 VP-AEELDKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN  283 (287)
T ss_pred             CC-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence            99 899999999999999999999999999999998888888899999999999999999999999999999863

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=99.92  E-value=4.8e-26  Score=164.10  Aligned_cols=152  Identities=16%  Similarity=0.224  Sum_probs=133.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |+|+++|||-.|-+.||+-|++ +++.|+....++|-+-++.++..|.+++|..+|+++-+.++.++|+||+++|+||.|
T Consensus       123 V~G~AiGGGhvlhvvCDLTiAa-~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~V  201 (282)
T COG0447         123 VAGYAIGGGHVLHVVCDLTIAA-DNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTV  201 (282)
T ss_pred             EeeEeccCccEEEEEeeeeeeh-hcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeee
Confidence            6899999999999999999999 999999999999998888889999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      || .++|+++..+|++++.+.+|.+++..|..++...+. +.-..+..-....-...+++.+|+..+|++||+|.
T Consensus       202 vp-~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~DG-laG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pd  274 (282)
T COG0447         202 VP-HADLEKETVQWAREMLAKSPTALRMLKAAFNADCDG-LAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPD  274 (282)
T ss_pred             cc-HHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCch-hhHHHHhcccceEEEEechhhhhhHHHHhhccCCC
Confidence            99 999999999999999999999999999999887652 22111111222223347899999999999999873

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.91  E-value=9.4e-25  Score=179.17  Aligned_cols=101  Identities=17%  Similarity=0.257  Sum_probs=96.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc--eeeeccccc-ccccCChhHHHHHH--HhhCHHHHHHHHhcCCCCCHHHHHHcC
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETK-MGIIAPFWFVDTMV--HTLGPRQTELALTSGKMFTSAEALKVG   75 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~-~Gl~~~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~eA~~~G   75 (155)
                      |||+|+|||++|+++||+||++ ++  ++|++||++ +|++|+++++.+++  +++|..+|++|+++|++++++||++||
T Consensus       126 VnG~a~GGG~~LALacD~rvAs-~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~G  204 (546)
T TIGR03222       126 VNGTCAGGGYELALACDEIMLV-DDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWR  204 (546)
T ss_pred             ECCEeehHHHHHHHhCCEEEEe-cCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcC
Confidence            7999999999999999999999 75  799999997 99999999988887  799999999999999999999999999


Q ss_pred             ccceecCChhHHHHHHHHHHHHHhcCCh
Q psy15240         76 LIDEEVTSEEEAITRAETFLAQYATIPG  103 (155)
Q Consensus        76 lv~~v~~~~~~~~~~~~~~a~~l~~~~~  103 (155)
                      |||+|++ .+++++.+.+++++|+..||
T Consensus       205 LV~~vv~-~~~l~~~a~~lA~~la~~~p  231 (546)
T TIGR03222       205 LVDEVVK-PSQFDAAIAERAAELAAQSD  231 (546)
T ss_pred             CceEEeC-hHHHHHHHHHHHHHHHhCCC
Confidence            9999999 89999999999999999876

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.91  E-value=1.6e-24  Score=178.17  Aligned_cols=102  Identities=17%  Similarity=0.269  Sum_probs=96.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc--eeeeccccc-ccccCChhHHHHHH--HhhCHHHHHHHHhcCCCCCHHHHHHcC
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETK-MGIIAPFWFVDTMV--HTLGPRQTELALTSGKMFTSAEALKVG   75 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~-~Gl~~~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~eA~~~G   75 (155)
                      |||+|+|||++|+++|||||++ ++  ++|++||++ +|++|+++++++++  +++|..++++++++|++++++||+++|
T Consensus       130 VnG~a~GGG~~LALacD~rIas-~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~G  208 (550)
T PRK08184        130 VNGTCAGGGYELALACDEIVLV-DDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWR  208 (550)
T ss_pred             ECCEeehHHHHHHHhCCEEEEe-cCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcC
Confidence            7999999999999999999999 76  899999997 99999999999988  779999999999999999999999999


Q ss_pred             ccceecCChhHHHHHHHHHHHHHhcCChH
Q psy15240         76 LIDEEVTSEEEAITRAETFLAQYATIPGA  104 (155)
Q Consensus        76 lv~~v~~~~~~~~~~~~~~a~~l~~~~~~  104 (155)
                      |||++++ ++++.+.+.+++++|+..+|.
T Consensus       209 LVd~vv~-~d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        209 LVDEVVK-PSKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             CccEeeC-HHHHHHHHHHHHHHHHhCCCC
Confidence            9999999 899999999999999998754

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=99.90  E-value=7.6e-24  Score=153.92  Aligned_cols=95  Identities=29%  Similarity=0.516  Sum_probs=91.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|+|++++++||+||++ ++++|++||.++|+.|+.+++.+|++++|.+.+.+++++|++++++||.++||||++
T Consensus       100 v~G~a~g~G~~la~~~D~~i~~-~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~  178 (195)
T cd06558         100 VNGAALGGGLELALACDIRIAA-EDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEV  178 (195)
T ss_pred             ECCeeecHHHHHHHhCCEEEec-CCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQ   97 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~   97 (155)
                      ++ .+++.+.+.+++++
T Consensus       179 ~~-~~~l~~~a~~~a~~  194 (195)
T cd06558         179 VP-DEELLAAALELARR  194 (195)
T ss_pred             cC-hhHHHHHHHHHHhh
Confidence            99 69999999888775

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG1684|consensus

Probab=99.71  E-value=2.3e-17  Score=126.95  Aligned_cols=148  Identities=18%  Similarity=0.230  Sum_probs=127.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      +||..+|||++|...--||||+ ++..|.+||..+|++|+.|++++|++.-| ....++-+||+++++.|+...||.+..
T Consensus       142 mdGITMGgG~GLS~hg~fRVAT-erT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHy  219 (401)
T KOG1684|consen  142 MDGITMGGGVGLSVHGRFRVAT-ERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHY  219 (401)
T ss_pred             eeceeecCCcceeecceeEEee-ccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhc
Confidence            5899999999999999999999 99999999999999999999999999988 677889999999999999999999988


Q ss_pred             cCChhHHHHHHH--------------------------------------------------------------------
Q psy15240         81 VTSEEEAITRAE--------------------------------------------------------------------   92 (155)
Q Consensus        81 ~~~~~~~~~~~~--------------------------------------------------------------------   92 (155)
                      |+ .+.+..-=+                                                                    
T Consensus       220 v~-S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewa  298 (401)
T KOG1684|consen  220 VP-SEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWA  298 (401)
T ss_pred             cc-hhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHH
Confidence            77 332221111                                                                    


Q ss_pred             -HHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy15240         93 -TFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS  151 (155)
Q Consensus        93 -~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  151 (155)
                       +.++.|-.++|.++..+-++++.....++++++-.|.+...++..++|+.|++++-+-.
T Consensus       299 k~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LID  358 (401)
T KOG1684|consen  299 KETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLID  358 (401)
T ss_pred             HHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhheeec
Confidence             11224556678899999999999999999999999999999999999999999997643

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.70  E-value=4.2e-17  Score=118.24  Aligned_cols=87  Identities=22%  Similarity=0.240  Sum_probs=74.7

Q ss_pred             cccchHHHHHHhhcceeeeecCceeeecccccccccCCh--------------hHHHHHHHhhCH--HHHHHHHhcCCCC
Q psy15240          3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF--------------WFVDTMVHTLGP--RQTELALTSGKMF   66 (155)
Q Consensus         3 G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~--------------~~~~~l~~~~g~--~~a~~l~l~g~~~   66 (155)
                      |+|+|||+.|+++||++|++ ++++|+.++...+..++.              .....++++.|.  ..+++++++|+.+
T Consensus        70 G~AasgG~~iala~D~iva~-p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~  148 (187)
T cd07020          70 ARAASAGTYILLAAHIAAMA-PGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSL  148 (187)
T ss_pred             CCchhHHHHHHHhCCceeEC-CCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCee
Confidence            99999999999999999999 999999999985544332              245578899987  6889999999999


Q ss_pred             CHHHHHHcCccceecCChhHHHHH
Q psy15240         67 TSAEALKVGLIDEEVTSEEEAITR   90 (155)
Q Consensus        67 ~a~eA~~~Glv~~v~~~~~~~~~~   90 (155)
                      +++||+++||||+|+++.+++.+.
T Consensus       149 ~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         149 TAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             cHHHHHHcCCcccccCCHHHHHHH
Confidence            999999999999999954466654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.51  E-value=2.7e-14  Score=102.62  Aligned_cols=88  Identities=18%  Similarity=0.237  Sum_probs=73.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHH--------HHHHhhC--HHHHHHHHhcCCCCCHHH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVD--------TMVHTLG--PRQTELALTSGKMFTSAE   70 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~--------~l~~~~g--~~~a~~l~l~g~~~~a~e   70 (155)
                      |||.|.|+|+.|+++||++|++ ++++|+++.+..+..+......        .+++..|  ....++++..|..+++++
T Consensus        78 v~G~a~g~g~~la~a~D~i~a~-~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~  156 (177)
T cd07014          78 GGGNAASGGYWISTPANYIVAN-PSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQD  156 (177)
T ss_pred             ECCchhHHHHHHHHhCCEEEEC-CCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHH
Confidence            6899999999999999999999 9999999988776443222222        4555556  778899999999999999


Q ss_pred             HHHcCccceecCChhHHHHH
Q psy15240         71 ALKVGLIDEEVTSEEEAITR   90 (155)
Q Consensus        71 A~~~Glv~~v~~~~~~~~~~   90 (155)
                      |++.||||+|.+ .+++.+.
T Consensus       157 A~~~GLVD~v~~-~~e~~~~  175 (177)
T cd07014         157 AKANGLVDSLGS-FDDAVAK  175 (177)
T ss_pred             HHHcCCcccCCC-HHHHHHH
Confidence            999999999999 7877653

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.33  E-value=4.1e-12  Score=89.82  Aligned_cols=79  Identities=19%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChh---------------HHHHHHHhhC--HHHHHHHHhcC
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLG--PRQTELALTSG   63 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g--~~~a~~l~l~g   63 (155)
                      |+|.|.++|+.|+++||+|+++ ++++|.++....+..+...               ....+.+..|  .....+++..+
T Consensus        65 v~g~a~s~g~~ia~a~d~~~~~-~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~  143 (160)
T cd07016          65 IDGLAASAASVIAMAGDEVEMP-PNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAE  143 (160)
T ss_pred             EcchHHhHHHHHHhcCCeEEEC-CCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence            5799999999999999999999 9999999888776654332               2334778888  67778888877


Q ss_pred             CCCCHHHHHHcCcccee
Q psy15240         64 KMFTSAEALKVGLIDEE   80 (155)
Q Consensus        64 ~~~~a~eA~~~Glv~~v   80 (155)
                      ..++++||+++||||+|
T Consensus       144 ~~l~a~eA~~~GliD~v  160 (160)
T cd07016         144 TWLTAQEAVELGFADEI  160 (160)
T ss_pred             eECcHHHHHHcCCCCcC
Confidence            88999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.94  E-value=8.7e-10  Score=92.28  Aligned_cols=101  Identities=16%  Similarity=0.193  Sum_probs=76.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceee------eccc------ccccccCChhHHHHHH--------------------
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTI------GLNE------TKMGIIAPFWFVDTMV--------------------   48 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~------~~~e------~~~Gl~~~~~~~~~l~--------------------   48 (155)
                      ++|.|.+||.-++++||.+|++ +++.+      +.+.      .++|+.+....+..+.                    
T Consensus       385 ~~g~aaSggY~iA~aaD~I~a~-p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l  463 (584)
T TIGR00705       385 MGAMAASGGYWIASAADYIVAS-PNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSV  463 (584)
T ss_pred             ECCccccHHHHHHHhCCEEEEC-CCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHH
Confidence            4799999999999999999999 99877      5552      5788887655443332                    


Q ss_pred             --------HhhCHHH-----HHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcC-ChHHHH
Q psy15240         49 --------HTLGPRQ-----TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATI-PGAARK  107 (155)
Q Consensus        49 --------~~~g~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~-~~~a~~  107 (155)
                              ..++..+     ..+.+..|+.+++++|+++||||++.. .    +.+.+.+++++.. ++.++.
T Consensus       464 ~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~-~----~~Ai~~a~~la~~~~~~~v~  531 (584)
T TIGR00705       464 EAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG-L----DEAVAKAAKLAHCREQWSVE  531 (584)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC-H----HHHHHHHHHHcCCCCCceEE
Confidence                    2555555     677888999999999999999999965 3    4456667777776 444333

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=98.87  E-value=6.8e-09  Score=73.28  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCCh----------hH---HHHHHHh------hCHHHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF----------WF---VDTMVHT------LGPRQTELALT   61 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~----------~~---~~~l~~~------~g~~~a~~l~l   61 (155)
                      ++|.|.++|+.|+++||.|++. +++.|++.....+.....          ..   ...+...      +......+.+.
T Consensus        64 ~~g~~~s~g~~la~~~d~~~~~-~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~  142 (161)
T cd00394          64 VGGQAASAGYYIATAANKIVMA-PGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIE  142 (161)
T ss_pred             ECChhHHHHHHHHhCCCEEEEC-CCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhc
Confidence            5799999999999999999999 999999998876654221          00   0111212      23344677778


Q ss_pred             cCCCCCHHHHHHcCcccee
Q psy15240         62 SGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v   80 (155)
                      .+..++++||+++||||+|
T Consensus       143 ~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         143 KDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             CCcEEcHHHHHHcCCcCcC
Confidence            8999999999999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.80  E-value=1.3e-08  Score=73.18  Aligned_cols=88  Identities=26%  Similarity=0.329  Sum_probs=63.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCCh-------hH---HHHHHHhhC--HHHHHHHHhcC-----
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF-------WF---VDTMVHTLG--PRQTELALTSG-----   63 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~-------~~---~~~l~~~~g--~~~a~~l~l~g-----   63 (155)
                      |+|.|.++|+.|+++||+++++ +++.|+.+..-.+...+.       ..   ...+.++-|  ...+..|+-..     
T Consensus        65 V~g~AaSaG~~ia~a~d~i~m~-p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~  143 (178)
T cd07021          65 VNDRAASAGALIALAADEIYMA-PGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPG  143 (178)
T ss_pred             ECCchHHHHHHHHHhCCeEEEC-CCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhccccc
Confidence            6899999999999999999999 999999986553321100       01   111333334  34556665543     


Q ss_pred             --------CCCCHHHHHHcCccceecCChhHHHH
Q psy15240         64 --------KMFTSAEALKVGLIDEEVTSEEEAIT   89 (155)
Q Consensus        64 --------~~~~a~eA~~~Glv~~v~~~~~~~~~   89 (155)
                              -.+|++||++.|++|.+.+|.+++..
T Consensus       144 ~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~  177 (178)
T cd07021         144 VGIKGGELLTLTADEALKVGYAEGIAGSLDELLV  177 (178)
T ss_pred             ccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence                    26999999999999999998777754

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.65  E-value=8.2e-08  Score=71.01  Aligned_cols=85  Identities=20%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeeccccc------------ccccCCh------------------hHHHHHHH-
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK------------MGIIAPF------------------WFVDTMVH-   49 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~------------~Gl~~~~------------------~~~~~l~~-   49 (155)
                      |+|.|.|+|+.|+++||++|++ +++.|+..-+.            +|+-+..                  .--..+.. 
T Consensus        80 v~g~a~s~gy~lA~~aD~i~a~-~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~  158 (214)
T cd07022          80 VNGLAASAAYWIASAADRIVVT-PTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAE  158 (214)
T ss_pred             ECCchhhHHHHHHhcCCEEEEc-CCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHH
Confidence            5899999999999999999999 99987544322            2221100                  00001111 


Q ss_pred             ----------------hhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHH
Q psy15240         50 ----------------TLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAIT   89 (155)
Q Consensus        50 ----------------~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~   89 (155)
                                      .+.....++++  |+.+++++|++.||||+|.. .+++.+
T Consensus       159 l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~-~~~~~~  211 (214)
T cd07022         159 VDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGT-LDDALA  211 (214)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCC-HHHHHH
Confidence                            11223334444  99999999999999999988 676654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=98.62  E-value=8e-08  Score=70.91  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeeccc------------ccccccCC---h-h-------------HHHHHHHh-
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNE------------TKMGIIAP---F-W-------------FVDTMVHT-   50 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e------------~~~Gl~~~---~-~-------------~~~~l~~~-   50 (155)
                      |+|+|.|+|+.|+++||++|++ +++.|+..-            .++|+.+.   . +             .-..+... 
T Consensus        77 v~g~a~s~gy~la~~aD~i~a~-~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~l  155 (211)
T cd07019          77 AGGAAASGGYWISTPANYIVAN-PSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSI  155 (211)
T ss_pred             ECCeehhHHHHHHHhCCEEEEc-CCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHH
Confidence            5899999999999999999999 998886333            12232110   0 0             00111111 


Q ss_pred             ----------------hCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHH
Q psy15240         51 ----------------LGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAIT   89 (155)
Q Consensus        51 ----------------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~   89 (155)
                                      +.+. ..+-+..+..+++++|++.||||+|.. .++..+
T Consensus       156 d~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~-~~~~~~  208 (211)
T cd07019         156 ENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGD-FDDAVA  208 (211)
T ss_pred             HHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCC-HHHHHH
Confidence                            1122 223355788999999999999999988 666544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=98.55  E-value=4e-07  Score=67.03  Aligned_cols=90  Identities=26%  Similarity=0.316  Sum_probs=60.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeeccccc------------ccccC------------------ChhHHHHH---
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK------------MGIIA------------------PFWFVDTM---   47 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~------------~Gl~~------------------~~~~~~~l---   47 (155)
                      ++|.|.++|+.|+++||.++++ +++.|+..-+.            +|+-+                  ....-..+   
T Consensus        68 v~g~a~s~g~~la~aaD~i~a~-p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~  146 (207)
T TIGR00706        68 MGGVAASGGYYIAMAADEIVAN-PGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNL  146 (207)
T ss_pred             ECCccchHHHHHHhcCCEEEEC-CCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHH
Confidence            5799999999999999999999 99877653332            23321                  00000111   


Q ss_pred             ------------H--HhhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHH
Q psy15240         48 ------------V--HTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET   93 (155)
Q Consensus        48 ------------~--~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~   93 (155)
                                  .  |.+......+ ++.++.+++++|++.||||++.. .+++.+...+
T Consensus       147 l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~-~~~~~~~~~~  204 (207)
T TIGR00706       147 VNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGT-EDDALKWLAE  204 (207)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCC-HHHHHHHHHH
Confidence                        1  1122333333 46789999999999999999988 7777665544

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=98.53  E-value=2.1e-07  Score=68.52  Aligned_cols=86  Identities=23%  Similarity=0.276  Sum_probs=56.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccc------------cccccCChh------------------HHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNET------------KMGIIAPFW------------------FVDTMVHT   50 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~------------~~Gl~~~~~------------------~~~~l~~~   50 (155)
                      ++|.|.|+|+.|+++||++|++ +++.|+..-+            ++|+-+...                  ....+...
T Consensus        73 v~g~~~s~g~~lA~aaD~i~a~-~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~  151 (208)
T cd07023          73 MGDVAASGGYYIAAAADKIVAN-PTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQAL  151 (208)
T ss_pred             ECCcchhHHHHHHhhCCEEEEC-CCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHH
Confidence            5899999999999999999999 9998753321            123222110                  01111111


Q ss_pred             hC-----------------HHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHH
Q psy15240         51 LG-----------------PRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAIT   89 (155)
Q Consensus        51 ~g-----------------~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~   89 (155)
                      +.                 ... .+-+..|..+++++|++.||||++.. .++..+
T Consensus       152 l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~-~~~~~~  205 (208)
T cd07023         152 VDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGG-LDDAIA  205 (208)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCC-HHHHHH
Confidence            11                 111 23356789999999999999999987 666543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.41  E-value=1.4e-06  Score=62.29  Aligned_cols=86  Identities=26%  Similarity=0.378  Sum_probs=65.6

Q ss_pred             cccchHHHHHHhhcceeeeecCceeeecccccccccC-------Ch----hH---HHHHHHhhC--HHHHHHHHhcCCCC
Q psy15240          3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA-------PF----WF---VDTMVHTLG--PRQTELALTSGKMF   66 (155)
Q Consensus         3 G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~-------~~----~~---~~~l~~~~g--~~~a~~l~l~g~~~   66 (155)
                      |.|..+|.-|+++||.+++. +++.++....-.|..+       +.    ..   ..-+.+.-|  ...+..++.....+
T Consensus        70 ~~AaSag~~I~~a~~~i~m~-p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~l  148 (172)
T cd07015          70 ASAASAGTYIALGSHLIAMA-PGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSL  148 (172)
T ss_pred             CeehhHHHHHHHhcCceEEC-CCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCc
Confidence            78999999999999999999 9999999887544322       10    00   111333344  46677888888999


Q ss_pred             CHHHHHHcCccceecCChhHHHH
Q psy15240         67 TSAEALKVGLIDEEVTSEEEAIT   89 (155)
Q Consensus        67 ~a~eA~~~Glv~~v~~~~~~~~~   89 (155)
                      |++||+++|++|.|++|.+++++
T Consensus       149 ta~EA~~~G~iD~ia~~~~~ll~  171 (172)
T cd07015         149 TPEEALKYGVIEVVARDINELLK  171 (172)
T ss_pred             CHHHHHHcCCceeeeCCHHHHhh
Confidence            99999999999999998777654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.18  E-value=3e-06  Score=62.13  Aligned_cols=83  Identities=20%  Similarity=0.258  Sum_probs=56.0

Q ss_pred             CCcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChhH---------------HHHHHHhhCH--HHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLGP--RQTELALT   61 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g~--~~a~~l~l   61 (155)
                      +.|.|.+.|..|+++++  .|++. ++++|.+....-|......-               ...+..+.|.  .....++-
T Consensus        96 ~~G~aaS~a~~I~~ag~~~~r~~~-p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~  174 (200)
T PRK00277         96 CIGQAASMGAFLLAAGAKGKRFAL-PNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTD  174 (200)
T ss_pred             EEeEeccHHHHHHhcCCCCCEEEc-CCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            46999999999988754  57887 77777776654222110000               1224444443  45566666


Q ss_pred             cCCCCCHHHHHHcCccceecCCh
Q psy15240         62 SGKMFTSAEALKVGLIDEEVTSE   84 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~~~   84 (155)
                      ...-++++||+++||||+|+++.
T Consensus       175 ~~~~lsa~EA~e~GliD~Ii~~~  197 (200)
T PRK00277        175 RDNFMSAEEAKEYGLIDEVLTKR  197 (200)
T ss_pred             CCccccHHHHHHcCCccEEeecC
Confidence            77889999999999999999843

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.17  E-value=1.8e-05  Score=60.02  Aligned_cols=71  Identities=11%  Similarity=0.113  Sum_probs=48.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |-|.|.|||.-....||++++. +++.++.      +.|.++.+..+...--...+.+.    ..+++.++.+.|+||+|
T Consensus       143 I~G~~~gGgA~a~~~~D~v~m~-~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~i  211 (256)
T PRK12319        143 IIGEGGSGGALALAVADQVWML-ENTMYAV------LSPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKV  211 (256)
T ss_pred             EeCCcCcHHHHHhhcCCEEEEe-cCceEEE------cCHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEe
Confidence            3488999988877899999999 8886654      23444433333322111222333    37799999999999999


Q ss_pred             cC
Q psy15240         81 VT   82 (155)
Q Consensus        81 ~~   82 (155)
                      ++
T Consensus       212 i~  213 (256)
T PRK12319        212 IP  213 (256)
T ss_pred             cC
Confidence            98

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.13  E-value=5.3e-06  Score=61.13  Aligned_cols=86  Identities=22%  Similarity=0.285  Sum_probs=62.2

Q ss_pred             CCcccchHHHHHHhhcc--eeeeecCceeeecccccc-cccCChh----------------HHHHHHHhhC--HHHHHHH
Q psy15240          1 MKGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKM-GIIAPFW----------------FVDTMVHTLG--PRQTELA   59 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~-Gl~~~~~----------------~~~~l~~~~g--~~~a~~l   59 (155)
                      +.|.|.+.|.-|+++||  .|++. +++.|.+..... |..-+..                ....+.+.-|  .....++
T Consensus       100 ~~G~aaSaa~lI~~ag~~~~R~~~-p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~  178 (207)
T PRK12553        100 CTGQAASAGAVLLAAGTPGKRFAL-PNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD  178 (207)
T ss_pred             EEeehhhHHHHHHHcCCcCcEEEC-CCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            35889999999999999  59999 999999988753 2110100                0123344444  3555667


Q ss_pred             HhcCCCCCHHHHHHcCccceecCChhHH
Q psy15240         60 LTSGKMFTSAEALKVGLIDEEVTSEEEA   87 (155)
Q Consensus        60 ~l~g~~~~a~eA~~~Glv~~v~~~~~~~   87 (155)
                      +-.+.-++++||+++||||+|++|.+++
T Consensus       179 ~~~~~~lta~EA~e~GliD~I~~~~~dl  206 (207)
T PRK12553        179 TDRDKWLTAEEAKDYGLVDQIITSYRDL  206 (207)
T ss_pred             HhcCccccHHHHHHcCCccEEcCchhhc
Confidence            7788899999999999999999966654

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.12  E-value=9.2e-06  Score=60.41  Aligned_cols=86  Identities=20%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccccc------------cccCC---------hh-----------HHHHHHH
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKM------------GIIAP---------FW-----------FVDTMVH   49 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~------------Gl~~~---------~~-----------~~~~l~~   49 (155)
                      +| |.+||..|+++||.+|++ +++.|+..-+..            |+-+.         .+           .-..+..
T Consensus        86 ~~-~~sggy~lasaad~I~a~-p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~  163 (222)
T cd07018          86 DG-YSQGQYYLASAADEIYLN-PSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQA  163 (222)
T ss_pred             CC-CCchhhhhhhhCCEEEEC-CCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHH
Confidence            55 788999999999999999 999988853321            22110         00           0000111


Q ss_pred             -----------------hhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHH
Q psy15240         50 -----------------TLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA   91 (155)
Q Consensus        50 -----------------~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~   91 (155)
                                       .+......+ +..|..+++++|++.||||++.. .+++.+..
T Consensus       164 ~l~~~~~~f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~-~~e~~~~l  220 (222)
T cd07018         164 LLDSLWDQYLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAY-RDELEARL  220 (222)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCc-HHHHHHHH
Confidence                             111222333 34599999999999999999998 78776543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.02  E-value=2.5e-05  Score=57.16  Aligned_cols=89  Identities=19%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             CCcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhH---------------HHHHHHhhC--HHHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLG--PRQTELALT   61 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g--~~~a~~l~l   61 (155)
                      |.|.|...|.-|+++||-  |++. ++++|-+....-++.....-               ...+...-|  ......++-
T Consensus        88 v~G~AaSaaslIl~ag~~~~R~~~-p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~  166 (197)
T PRK14512         88 GVGLVASAAALIFLAAKKESRFSL-PNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD  166 (197)
T ss_pred             EEeeeHhHHHHHHhcCCcCceeEC-CCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence            358899999999999985  8999 99988777654333211110               111222223  234455555


Q ss_pred             cCCCCCHHHHHHcCccceecCChhHHHHH
Q psy15240         62 SGKMFTSAEALKVGLIDEEVTSEEEAITR   90 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~~~~~~~~~   90 (155)
                      ...-+|++||+++||||+|+++.+++...
T Consensus       167 ~d~~lta~EA~~yGliD~I~~~~~~l~~~  195 (197)
T PRK14512        167 RDFWLDSSSAVKYGLVFEVVETRLELEEF  195 (197)
T ss_pred             cCcccCHHHHHHcCCccEeecCcHHhHhh
Confidence            66779999999999999999976776543

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.92  E-value=9.5e-05  Score=57.62  Aligned_cols=71  Identities=14%  Similarity=0.060  Sum_probs=50.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |-|.|.|||.-....||++++. ++++++.      +.|.++.+..+..   ..+|.++. ..-.+|+++.++.|+||+|
T Consensus       199 ViGeggsGGAlal~~aD~V~m~-e~a~~sV------isPEg~a~Il~~d---~~~a~~aA-~~~~ita~dL~~~giiD~i  267 (322)
T CHL00198        199 IIGEGGSGGALGIGIGDSIMML-EYAVYTV------ATPEACAAILWKD---SKKSLDAA-EALKITSEDLKVLGIIDEI  267 (322)
T ss_pred             EeCcccHHHHHhhhcCCeEEEe-CCeEEEe------cCHHHHHHHHhcc---hhhHHHHH-HHcCCCHHHHHhCCCCeEe
Confidence            3488888886555569999999 9987665      3455555444432   33444443 4568999999999999999


Q ss_pred             cC
Q psy15240         81 VT   82 (155)
Q Consensus        81 ~~   82 (155)
                      ++
T Consensus       268 i~  269 (322)
T CHL00198        268 IP  269 (322)
T ss_pred             cc
Confidence            98

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.91  E-value=4.5e-05  Score=54.05  Aligned_cols=78  Identities=21%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChh---------------HHHHHHHhhC--HHHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLG--PRQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g--~~~a~~l~l~   62 (155)
                      .|.|.++|.-|+++||  .|++. ++++|.+....-+......               ....+.+.-|  .....+++-.
T Consensus        66 ~g~aaS~~~~i~~a~~~g~r~~~-p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~  144 (162)
T cd07013          66 DGLAASMGSVIAMAGAKGKRFIL-PNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER  144 (162)
T ss_pred             EeehhhHHHHHHHcCCCCcEEEe-cCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence            5889999999999999  69999 8998887654333221110               0112223333  3455566666


Q ss_pred             CCCCCHHHHHHcCcccee
Q psy15240         63 GKMFTSAEALKVGLIDEE   80 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v   80 (155)
                      +.-++++||+++||||+|
T Consensus       145 ~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         145 DTWLSAREAVEYGFADTI  162 (162)
T ss_pred             CccccHHHHHHcCCCCcC
Confidence            667799999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.85  E-value=0.00011  Score=58.84  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=47.5

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV   81 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~   81 (155)
                      -|.+.+||.-...+||++++. ++++++.      +.|+++.+..+....-...|.+    .-.+|++++++.|+||+|+
T Consensus       267 iGeGgSGGAlalg~aD~VlMl-e~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II  335 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMM-ENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIV  335 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEe-cCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEec
Confidence            467766665555578999999 8886543      3345555544444333333333    3389999999999999999


Q ss_pred             C
Q psy15240         82 T   82 (155)
Q Consensus        82 ~   82 (155)
                      +
T Consensus       336 ~  336 (431)
T PLN03230        336 P  336 (431)
T ss_pred             c
Confidence            8

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.81  E-value=0.00019  Score=55.97  Aligned_cols=70  Identities=17%  Similarity=0.196  Sum_probs=47.7

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV   81 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~   81 (155)
                      -|.|.|||.-....||++++. +++.++       +.+|-+.+..+-+.  ..++.+..- .-.+|+.++.+.|+||+|+
T Consensus       197 iGeg~sGGAla~~~aD~v~m~-~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II  265 (319)
T PRK05724        197 IGEGGSGGALAIGVGDRVLML-EYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEII  265 (319)
T ss_pred             eCCccHHHHHHHhccCeeeee-cCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEec
Confidence            478888887555569999999 888654       33344444443332  233333333 5668999999999999999


Q ss_pred             C
Q psy15240         82 T   82 (155)
Q Consensus        82 ~   82 (155)
                      +
T Consensus       266 ~  266 (319)
T PRK05724        266 P  266 (319)
T ss_pred             c
Confidence            8

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.76  E-value=0.00019  Score=55.87  Aligned_cols=70  Identities=16%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV   81 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~   81 (155)
                      -|.|.|||.-....||++++. ++++++.      +.|.++.+..+...   .++.+..- ...+++.++.+.|+||+|+
T Consensus       197 iGeggsGGAla~~~aD~v~m~-~~a~~sV------isPEg~a~Il~kd~---~~a~~aae-~~~~ta~~l~~~G~iD~II  265 (316)
T TIGR00513       197 IGEGGSGGALAIGVGDKVNML-EYSTYSV------ISPEGCAAILWKDA---SKAPKAAE-AMKITAPDLKELGLIDSII  265 (316)
T ss_pred             ecccccHHHhhhccCCEEEEe-cCceEEe------cCHHHHHHHhccch---hhHHHHHH-HccCCHHHHHHCCCCeEec
Confidence            478877777555579999999 8886554      33444444333322   22222222 3677899999999999999


Q ss_pred             C
Q psy15240         82 T   82 (155)
Q Consensus        82 ~   82 (155)
                      +
T Consensus       266 ~  266 (316)
T TIGR00513       266 P  266 (316)
T ss_pred             c
Confidence            8

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.76  E-value=0.00018  Score=61.23  Aligned_cols=98  Identities=7%  Similarity=0.002  Sum_probs=61.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |-|.|.|||.-....||++++. ++++++.      +.|.++.+..+...   .+|.++ -..-.+|+++.+++|+||+|
T Consensus       287 ViGeggSGGAlA~g~aD~VlMl-e~A~~sV------isPEgaAsILwkd~---~~A~eA-Ae~lkiTa~dL~~lGiiD~I  355 (762)
T PLN03229        287 VIGEGGSGGALAIGCANKLLML-ENAVFYV------ASPEACAAILWKSA---KAAPKA-AEKLRITAQELCRLQIADGI  355 (762)
T ss_pred             EeCCcchHHHHHhhcCCEEEEe-cCCeEEe------cCHHHHHHHHhcCc---ccHHHH-HHHcCCCHHHHHhCCCCeee
Confidence            3588988888777789999999 8876543      33444444333322   233333 24568999999999999999


Q ss_pred             cCCh--------h----HHHHHHHHHHHHHhcCChHHHHHH
Q psy15240         81 VTSE--------E----EAITRAETFLAQYATIPGAARKLT  109 (155)
Q Consensus        81 ~~~~--------~----~~~~~~~~~a~~l~~~~~~a~~~~  109 (155)
                      ++-+        +    .+...+......|...++..+...
T Consensus       356 IpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~  396 (762)
T PLN03229        356 IPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKH  396 (762)
T ss_pred             ccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9832        1    222333444555556666554443

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.73  E-value=3.7e-05  Score=54.96  Aligned_cols=78  Identities=19%  Similarity=0.238  Sum_probs=57.7

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~   62 (155)
                      .|.|.++|.-+++++|  .|++. +++.|.+.+...+...+..               ....+..+.|.  .....++-.
T Consensus        75 ~g~aaS~~~~i~~~g~~~~r~~~-~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~  153 (171)
T cd07017          75 LGLAASMGALLLAAGTKGKRYAL-PNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDR  153 (171)
T ss_pred             EeEehhHHHHHHHcCCCCCEEEc-cchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Confidence            5889999999999999  79999 9999999987766542210               01122333333  355566667


Q ss_pred             CCCCCHHHHHHcCcccee
Q psy15240         63 GKMFTSAEALKVGLIDEE   80 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v   80 (155)
                      +.-++++||+++||||+|
T Consensus       154 ~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         154 DRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CccccHHHHHHcCCCccC
Confidence            888999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.62  E-value=0.00021  Score=52.43  Aligned_cols=81  Identities=12%  Similarity=0.127  Sum_probs=57.3

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChhH----------------HHHHHHhhCH--HHHHHHHh
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFWF----------------VDTMVHTLGP--RQTELALT   61 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~~----------------~~~l~~~~g~--~~a~~l~l   61 (155)
                      -|.|.+.|.-|++++|  -|++. ++++|-+.....|..-+...                ...+...-|.  ....+++-
T Consensus        96 ~G~AaS~aslIl~aG~kg~R~~~-p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~  174 (200)
T CHL00028         96 LGLAASMASFILAGGEITKRLAF-PHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME  174 (200)
T ss_pred             EEehHHHHHHHHhCCCCCCEEec-CCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            4788889999999999  59999 99999998876652211110                1223333332  34455556


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q psy15240         62 SGKMFTSAEALKVGLIDEEVTS   83 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~~   83 (155)
                      ...-++++||+++||||+|+++
T Consensus       175 r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        175 RDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             cCccCCHHHHHHcCCCcEEeec
Confidence            6677999999999999999873

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.54  E-value=0.00011  Score=51.58  Aligned_cols=90  Identities=26%  Similarity=0.350  Sum_probs=54.4

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeeccccc------------cccc---------CChh---------HHHHHHHhh
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETK------------MGII---------APFW---------FVDTMVHTL   51 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~------------~Gl~---------~~~~---------~~~~l~~~~   51 (155)
                      +|.|..++.-|+++||-+|+. +.+.++..-+.            +|+-         ...+         .-..+...+
T Consensus        14 ~~~~~S~~Y~lAs~ad~I~~~-p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~~~r~~~~~~l   92 (154)
T PF01343_consen   14 EGYAASGAYYLASAADEIYAN-PSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSEEERENLQELL   92 (154)
T ss_dssp             EEEEETHHHHHHTTSSEEEE--TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHcCCEEEec-CCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCHHHHHHHHHHH
Confidence            456677899999999999999 88877765433            2211         0000         000111111


Q ss_pred             -----------------CHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240         52 -----------------GPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETF   94 (155)
Q Consensus        52 -----------------g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~   94 (155)
                                       .... .+-+..|..+++++|++.||||++.. .+++.+.+.+.
T Consensus        93 ~~~~~~f~~~Va~~R~~~~~~-v~~~~~~~~~~~~~A~~~GLiD~i~~-~~~~~~~l~~~  150 (154)
T PF01343_consen   93 DELYDQFVNDVAEGRGLSPDD-VEEIADGGVFTAQQALELGLIDEIGT-FDEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHH-HHCHHCCHEEEHHHHHHTTSSSEETS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCHHH-HHHHHhhccccHHHHHHcCchhhcCC-HHHHHHHHHHH
Confidence                             1111 22346889999999999999999988 88887766553

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.53  E-value=7.1e-05  Score=53.85  Aligned_cols=81  Identities=19%  Similarity=0.237  Sum_probs=56.5

Q ss_pred             CCcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhH---------------HHHHHHhhC--HHHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLG--PRQTELALT   61 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g--~~~a~~l~l   61 (155)
                      +.|.|...|.-++++||.  |++. +++.|.+.+...+......-               ...+....|  .....+++-
T Consensus        81 ~~G~aaSaa~~i~~ag~~~~R~~~-~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  159 (182)
T PF00574_consen   81 VLGLAASAATLIFLAGDKGKRYAS-PNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMD  159 (182)
T ss_dssp             EEEEEETHHHHHHHTSSTTTEEE--TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCS
T ss_pred             EeCccccceehhhhcCCcCceeee-ecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence            358899999999999999  8999 99999999987776531111               122222323  344455555


Q ss_pred             cCCCCCHHHHHHcCccceecC
Q psy15240         62 SGKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~   82 (155)
                      ...-++++||+++||||+|+.
T Consensus       160 ~~~~l~a~EA~~~GiiD~I~~  180 (182)
T PF00574_consen  160 RDTWLSAEEALEYGIIDEIIE  180 (182)
T ss_dssp             STEEEEHHHHHHHTSSSEEES
T ss_pred             CCccccHHHHHHcCCCCEecc
Confidence            666689999999999999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.50  E-value=0.00039  Score=50.59  Aligned_cols=80  Identities=23%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeeccccccccc---CChh------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGII---APFW------------FVDTMVHTLGP--RQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~---~~~~------------~~~~l~~~~g~--~~a~~l~l~   62 (155)
                      -|.|...|.-|++++|  .|++. ++++|.+.+..-|..   .+..            ....+.++-|.  ....+++-.
T Consensus        92 ~G~AaSaaslI~~aG~~~~r~~~-p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~  170 (191)
T TIGR00493        92 IGQAASMGAFLLSAGAKGKRFSL-PNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER  170 (191)
T ss_pred             EEeeccHHHHHHhcCCCCcEEec-CCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence            4778888888888665  69999 999999987654322   1110            00123344443  455666777


Q ss_pred             CCCCCHHHHHHcCccceecC
Q psy15240         63 GKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~   82 (155)
                      +.-+|++||+++||||+|+.
T Consensus       171 ~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       171 DFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             CccCcHHHHHHcCCccEEec
Confidence            78899999999999999975

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.40  E-value=0.001  Score=51.55  Aligned_cols=84  Identities=23%  Similarity=0.246  Sum_probs=57.5

Q ss_pred             CCcccchHHH-HHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGC-QFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~-~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |-|+|+||+. .+++.+|++|+. +++.+++.-.+           .+...++.    ++  --+.-+++-+.+.|+||.
T Consensus       201 v~gpt~GG~aas~a~~~D~iia~-p~A~ig~aGpr-----------vie~~~~e----~l--pe~~~~ae~~~~~G~vD~  262 (292)
T PRK05654        201 LTDPTTGGVSASFAMLGDIIIAE-PKALIGFAGPR-----------VIEQTVRE----KL--PEGFQRAEFLLEHGAIDM  262 (292)
T ss_pred             EeCCCchHHHHHHHHcCCEEEEe-cCcEEEecCHH-----------HHHhhhhh----hh--hhhhcCHHHHHhCCCCcE
Confidence            3589999975 468889999999 88766653331           11111221    11  112336777789999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCCh
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPG  103 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~  103 (155)
                      |++ +.++.....++++.+...++
T Consensus       263 Vv~-~~e~r~~l~~~L~~~~~~~~  285 (292)
T PRK05654        263 IVH-RRELRDTLASLLALHTKQPA  285 (292)
T ss_pred             EEC-HHHHHHHHHHHHHHHhcCCC
Confidence            999 99999999998887765543

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.38  E-value=0.00069  Score=50.37  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~   62 (155)
                      -|.|.+.|.-|++++|.  |++. +++++-+....-|......               ....+....|.  ....+.+-.
T Consensus       120 ~G~AAS~AslIl~aG~~gkR~~~-pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~r  198 (221)
T PRK14514        120 TGMAASMASVLLVAGTKGKRSAL-PHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDR  198 (221)
T ss_pred             EEEehhHHHHHHhcCCCCceeeC-CCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            47888999999999996  8999 9999988887544321111               01112233342  344555566


Q ss_pred             CCCCCHHHHHHcCccceecC
Q psy15240         63 GKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~   82 (155)
                      ..-+|++||+++||||+|++
T Consensus       199 d~wmtA~EA~eyGliD~Vi~  218 (221)
T PRK14514        199 DYWMTAQEAKEYGMIDEVLI  218 (221)
T ss_pred             CccCCHHHHHHcCCccEEee
Confidence            67799999999999999987

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=97.33  E-value=0.0006  Score=45.84  Aligned_cols=61  Identities=18%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy15240         90 RAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQ  150 (155)
Q Consensus        90 ~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  150 (155)
                      -+.+.++.|...+|.++..+-+++++....++.++++.|.....+++..+|+.||+++.+-
T Consensus        32 ~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI   92 (118)
T PF13766_consen   32 WAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI   92 (118)
T ss_dssp             HHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence            3556667888999999999999999998899999999999999999999999999999865

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.29  E-value=0.0017  Score=49.73  Aligned_cols=73  Identities=18%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             CCcc--cchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCH--HHHHHHHhcCCCCCHHHHHHcCc
Q psy15240          1 MKGH--APGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP--RQTELALTSGKMFTSAEALKVGL   76 (155)
Q Consensus         1 v~G~--a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~--~~a~~l~l~g~~~~a~eA~~~Gl   76 (155)
                      |-|+  |+||+..++.+||++|++ +++++++.-..       .    .....|.  -...+--+.-+.+.+......|+
T Consensus       143 v~Gp~gc~GG~a~~a~l~D~vim~-~~a~i~~aGP~-------V----Ie~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~  210 (274)
T TIGR03133       143 IGGRVGCFGGMGIAAGLCSYLIMT-EEGRLGLSGPE-------V----IEQEAGVEEFDSRDRALVWRTTGGKHRFLSGD  210 (274)
T ss_pred             EeCCCCcchHHHHHHhcCCEEEEe-CCcEEeccCHH-------H----HHHhcCCCccCHHHhcccccccchHhHhhccc
Confidence            3588  899999999999999999 77766553211       1    1112221  11122222223455566788999


Q ss_pred             cceecCChh
Q psy15240         77 IDEEVTSEE   85 (155)
Q Consensus        77 v~~v~~~~~   85 (155)
                      +|.+++|+.
T Consensus       211 ~D~~v~dd~  219 (274)
T TIGR03133       211 ADVLVEDDV  219 (274)
T ss_pred             ceEEeCCHH
Confidence            999999543

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.24  E-value=0.0013  Score=50.80  Aligned_cols=81  Identities=26%  Similarity=0.314  Sum_probs=55.5

Q ss_pred             CCcccchHHH-HHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGC-QFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~-~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |-|+|+||+. .+++.+|++|+. +++.+++.-.++           +...+|.     -+ .-+.-+++-+.+.|+||.
T Consensus       200 v~gpt~GG~aas~a~~~D~iia~-p~A~ig~aGprV-----------ie~ti~e-----~l-pe~~q~ae~~~~~G~vD~  261 (285)
T TIGR00515       200 LTDPTTGGVSASFAMLGDLNIAE-PKALIGFAGPRV-----------IEQTVRE-----KL-PEGFQTSEFLLEHGAIDM  261 (285)
T ss_pred             EeCCcchHHHHHHHhCCCEEEEE-CCeEEEcCCHHH-----------HHHHhcC-----cc-chhcCCHHHHHhCCCCcE
Confidence            3589999975 477899999999 888766643321           2222221     11 112336666889999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhc
Q psy15240         80 EVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      |++ +.++.+....++..+..
T Consensus       262 iv~-~~~~r~~l~~~L~~~~~  281 (285)
T TIGR00515       262 IVH-RPEMKKTLASLLAKLQN  281 (285)
T ss_pred             EEC-cHHHHHHHHHHHHHHhh
Confidence            999 89999888888776544

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.18  E-value=0.0015  Score=47.71  Aligned_cols=80  Identities=16%  Similarity=0.173  Sum_probs=55.7

Q ss_pred             CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~   62 (155)
                      -|.|.+.|.-|++++|-  |++. +++++-+....-|......               ....+..+.|.  ....+++-.
T Consensus        91 ~G~AaS~AslIl~aG~~~~R~~~-p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r  169 (196)
T PRK12551         91 VGLAASMGAFLLCAGAKGKRSSL-QHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR  169 (196)
T ss_pred             EEEehhHHHHHHhCCCCCceecC-CCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            47888899999999985  8899 9999988887544321110               01123333343  344555556


Q ss_pred             CCCCCHHHHHHcCccceecC
Q psy15240         63 GKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~   82 (155)
                      ..-+|++||+++||||+|++
T Consensus       170 d~~msa~EA~eyGliD~I~~  189 (196)
T PRK12551        170 DFFMSPSEAVEYGLIDLVID  189 (196)
T ss_pred             CcCCCHHHHHHcCCCcEEec
Confidence            66799999999999999998

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.14  E-value=0.0049  Score=47.85  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=24.7

Q ss_pred             CCcc--cchHHHHHHhhcceeeeecCceeeec
Q psy15240          1 MKGH--APGAGCQFAMSCEYRIMVGPKYTIGL   30 (155)
Q Consensus         1 v~G~--a~GgG~~la~~cD~~ia~~~~a~~~~   30 (155)
                      |-|+  |+||+.-.+.+||++|++ +++++++
T Consensus       152 v~G~~gc~GG~a~~a~l~D~iIm~-~~a~igl  182 (301)
T PRK07189        152 IGGRVGCFGGMGIAAALCSYLIVS-EEGRLGL  182 (301)
T ss_pred             EcCCCCCcHHHHHHHhcCCEEEEE-CCcEEec
Confidence            3577  999999999999999999 8776555

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.06  E-value=0.0018  Score=50.89  Aligned_cols=89  Identities=18%  Similarity=0.188  Sum_probs=57.2

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhH-------------------------------HHHHH--
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWF-------------------------------VDTMV--   48 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~-------------------------------~~~l~--   48 (155)
                      ++.|.-||.-++++||.+|+. +.+.++...+....+ ....                               -..+.  
T Consensus       162 ~~~AASggY~iAsaAD~I~A~-P~a~vGSIGVi~~~~-~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~  239 (330)
T PRK11778        162 DKVAASGGYMMACVADKIIAA-PFAIVGSIGVVAQIP-NFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREE  239 (330)
T ss_pred             CCchhhHHHHHHHhCCEEEEC-CCCeEEeeeeeeecc-CHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHH
Confidence            567778999999999999999 888776554432211 1100                               00011  


Q ss_pred             ---------HhhCHH---HHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHH
Q psy15240         49 ---------HTLGPR---QTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET   93 (155)
Q Consensus        49 ---------~~~g~~---~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~   93 (155)
                               ..+-..   ...+-+.+|+.+++++|++.||||++.. .+++.....+
T Consensus       240 Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~-~dd~i~~~~~  295 (330)
T PRK11778        240 LEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQT-SDDYLLELMK  295 (330)
T ss_pred             HHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCC-HHHHHHHHHh
Confidence                     111111   1133456899999999999999999998 7777654443

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.03  E-value=0.003  Score=46.35  Aligned_cols=80  Identities=20%  Similarity=0.240  Sum_probs=56.8

Q ss_pred             CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~   62 (155)
                      .|.|.+.|.-|++++|-  |++. +++++-+.....|......               ....+.++-|.  ....+++-.
T Consensus        93 ~G~AaS~As~il~aG~kgkR~~~-pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~r  171 (201)
T PRK14513         93 VGIAMSMGSVLLMAGDKGKRMAL-PNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMER  171 (201)
T ss_pred             EeeehhhHHHHHhcCCCCcEEec-CCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhcc
Confidence            57888899999999996  8999 9999998887655421000               11122333342  344555556


Q ss_pred             CCCCCHHHHHHcCccceecC
Q psy15240         63 GKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~   82 (155)
                      ..-+||+||+++||||+|++
T Consensus       172 d~~msa~EA~eyGliD~I~~  191 (201)
T PRK14513        172 DYFMSPEEAKAYGLIDSVIE  191 (201)
T ss_pred             CcccCHHHHHHcCCCcEEec
Confidence            66799999999999999988

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.00  E-value=0.0052  Score=47.52  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             CCcccchHHHH-HHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQ-FAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~-la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |.|+|.||+.. +++.||++|+. +++.+++.-.+       ..    ...+|.     - +.-+.-+++-.++.|+||.
T Consensus       214 l~gPt~GG~aas~a~l~Diiiae-~~A~IgfAGPr-------VI----e~t~ge-----~-lpe~fq~ae~l~~~G~vD~  275 (296)
T CHL00174        214 LTSPTTGGVTASFGMLGDIIIAE-PNAYIAFAGKR-------VI----EQTLNK-----T-VPEGSQAAEYLFDKGLFDL  275 (296)
T ss_pred             EcCCCchHHHHHHHHcccEEEEe-CCeEEEeeCHH-------HH----HHhcCC-----c-CCcccccHHHHHhCcCceE
Confidence            35899999975 57789999997 88765543321       11    111111     0 1122345777889999999


Q ss_pred             ecCChhHHHHHHHHHHHHH
Q psy15240         80 EVTSEEEAITRAETFLAQY   98 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l   98 (155)
                      ||+ ..++.+....++.-+
T Consensus       276 iV~-r~~lr~~l~~ll~~~  293 (296)
T CHL00174        276 IVP-RNLLKGVLSELFQLH  293 (296)
T ss_pred             EEc-HHHHHHHHHHHHHhh
Confidence            999 999988777766543

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.99  E-value=0.0022  Score=50.29  Aligned_cols=87  Identities=23%  Similarity=0.363  Sum_probs=61.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhC----------------------------
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG----------------------------   52 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g----------------------------   52 (155)
                      |++.|.-||.-++++||.+|++ +++..+---+..+.+    ....+-.++|                            
T Consensus       135 v~~~AASGGY~IA~aAd~I~a~-p~si~GSIGVi~~~~----~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~  209 (317)
T COG0616         135 VGGYAASGGYYIALAADKIVAD-PSSITGSIGVISGAP----NFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREI  209 (317)
T ss_pred             ECCeecchhhhhhccCCEEEec-CCceeeeceeEEecC----CHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHH
Confidence            5788999999999999999999 999887666555532    1222333333                            


Q ss_pred             ----------------------HHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHH
Q psy15240         53 ----------------------PRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAET   93 (155)
Q Consensus        53 ----------------------~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~   93 (155)
                                            ......-+.+|+.+++++|++.||||++.. .++......+
T Consensus       210 ~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~-~~~av~~~~~  271 (317)
T COG0616         210 LQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGG-LDDAVKDAAE  271 (317)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCC-HHHHHHHHHH
Confidence                                  111133556889999999999999999998 5554444333

>PRK10949 protease 4; Provisional

Probab=96.97  E-value=0.0029  Score=53.83  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=56.7

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccc------------cccccCChhH-----------------HHHHH----
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNET------------KMGIIAPFWF-----------------VDTMV----   48 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~------------~~Gl~~~~~~-----------------~~~l~----   48 (155)
                      .+.|.-||.-++++||.+|+. +.+..+.--+            ++|+.+....                 ...+.    
T Consensus       404 ~~~aASggY~iA~aad~I~a~-p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld  482 (618)
T PRK10949        404 GGMAASGGYWISTPANYIVAS-PSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIE  482 (618)
T ss_pred             CCCCccHHHHHHHhcCEEEEC-CCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHH
Confidence            467778999999999999999 8665444221            2333221000                 00011    


Q ss_pred             -------------HhhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240         49 -------------HTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETF   94 (155)
Q Consensus        49 -------------~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~   94 (155)
                                   |.+...... -+..|+.+++++|++.||||++-. .++..+.+.++
T Consensus       483 ~~y~~F~~~Va~~R~~~~~~v~-~ia~Grv~tg~~A~~~GLVD~lG~-~~~ai~~a~~~  539 (618)
T PRK10949        483 NGYKRFITLVADSRHKTPEQID-KIAQGHVWTGQDAKANGLVDSLGD-FDDAVAKAAEL  539 (618)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHH-HHhcCCcccHHHHHHcCCCccCCC-HHHHHHHHHHH
Confidence                         112222333 345899999999999999999988 67766555553

>KOG1683|consensus

Probab=96.78  E-value=0.001  Score=52.55  Aligned_cols=151  Identities=34%  Similarity=0.476  Sum_probs=96.3

Q ss_pred             CCcccchHH--HHHHhhcceeeeec-CceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcc
Q psy15240          1 MKGHAPGAG--CQFAMSCEYRIMVG-PKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLI   77 (155)
Q Consensus         1 v~G~a~GgG--~~la~~cD~~ia~~-~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv   77 (155)
                      +||++-.|+  +-++-+|+||+.-. +.-..+..+...++..+..-.-.+...+|.+.+-..+--+.-|+..||.+-|++
T Consensus       155 in~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~  234 (380)
T KOG1683|consen  155 INGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLG  234 (380)
T ss_pred             HhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccc
Confidence            356666667  67899999999762 232337888888844444555566777777777677778899999999999999


Q ss_pred             ceecCC-hhHHHHHHHHHHHHHhcCChHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy15240         78 DEEVTS-EEEAITRAETFLAQYATIPGAARKLTK--------LMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLY  148 (155)
Q Consensus        78 ~~v~~~-~~~~~~~~~~~a~~l~~~~~~a~~~~K--------~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  148 (155)
                      +++.+. .+++.+......+.-....+.+-..+|        +.+++-.....  ......+.+.....+|-.+|++..+
T Consensus       235 ~~~~~r~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~--~r~~~~ed~v~~~~~p~VnEal~~l  312 (380)
T KOG1683|consen  235 DEIGPRIEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPN--PRVADDEDFVEFLLSPFVNEALRCL  312 (380)
T ss_pred             hhccchhHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCC--cccCCHHHHHHHHhhHHHHHHHHHH
Confidence            999994 466666665555444333333222222        22222220000  0111234566667788899999999


Q ss_pred             Hhhcc
Q psy15240        149 LQSLK  153 (155)
Q Consensus       149 ~~~~~  153 (155)
                      .++-+
T Consensus       313 ~EGi~  317 (380)
T KOG1683|consen  313 LEGLK  317 (380)
T ss_pred             HHHHh
Confidence            88643

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=96.64  E-value=0.01  Score=45.39  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=37.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWF   43 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~   43 (155)
                      |+..|.-+|.-+|++||-+|+. +++.+|--+..+|-.|....
T Consensus       125 VP~~A~SAGTlIALaADeIvM~-p~a~LGpiDPqi~~~pA~si  166 (285)
T PF01972_consen  125 VPHYAMSAGTLIALAADEIVMG-PGAVLGPIDPQIGQYPAASI  166 (285)
T ss_pred             ECcccccHHHHHHHhCCeEEEC-CCCccCCCCccccCCChHHH
Confidence            5678999999999999999999 99999999999998875443

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.56  E-value=0.011  Score=44.07  Aligned_cols=78  Identities=22%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhHH-----------------HHHHHhhCH--HHHHHHH
Q psy15240          2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWFV-----------------DTMVHTLGP--RQTELAL   60 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~~-----------------~~l~~~~g~--~~a~~l~   60 (155)
                      -|.|.+.+.-|++++|-  |++. +++++-+....-|..  +...                 ..+...-|.  ....+.+
T Consensus       115 ~G~AaS~AslIl~aG~kg~R~al-pns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~  191 (222)
T PRK12552        115 IGQAMGTAAMILSAGTKGQRASL-PHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT  191 (222)
T ss_pred             EeehhhHHHHHHhCCCCCceecC-CCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence            47888889999999996  8999 999999888765543  1111                 111222221  2223333


Q ss_pred             hcCCCCCHHHHHHcCccceecC
Q psy15240         61 TSGKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        61 l~g~~~~a~eA~~~Glv~~v~~   82 (155)
                      -.-.-+|++||+++||||+|++
T Consensus       192 ~rd~wmsA~EA~eyGliD~Ii~  213 (222)
T PRK12552        192 DRMFYLTPQEAKEYGLIDRVLE  213 (222)
T ss_pred             cCCCcCCHHHHHHcCCCcEEec
Confidence            3444599999999999999987

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.56  E-value=0.0043  Score=51.68  Aligned_cols=78  Identities=14%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCce-eeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------H
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKY-TIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------L   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a-~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~   72 (155)
                      |.|+|+||+.-....||++|++ +++ ++.+       .             |++....  .+|+.++.++.       .
T Consensus       161 v~G~~~GG~a~~~al~D~vim~-~~~a~i~~-------a-------------GP~vv~~--~~Ge~v~~e~lGGa~~h~~  217 (512)
T TIGR01117       161 IMGPCAGGAVYSPALTDFIYMV-DNTSQMFI-------T-------------GPQVIKT--VTGEEVTAEQLGGAMAHNS  217 (512)
T ss_pred             EecCCCcHHHHHHHhcCceEEe-ccceEEEe-------c-------------ChHHHHh--hcCcccchhhcchHHHhcc
Confidence            4699999998877899999999 653 3333       2             1111111  24555555544       3


Q ss_pred             HcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFLAQYATI  101 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a~~l~~~  101 (155)
                      .-|++|.+++|+++..+.+++++.-+-..
T Consensus       218 ~sGv~d~~~~de~ea~~~~r~~ls~lp~~  246 (512)
T TIGR01117       218 VSGVAHFIAEDDDDCIMLIRRLLSFLPSN  246 (512)
T ss_pred             ccceeEEecCChHHHHHHHHHHHHhCCcC
Confidence            58999999998899998888888876543

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.26  E-value=0.0094  Score=44.86  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=46.3

Q ss_pred             CcccchHHH-HHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcC--CCCCHHHHHHcCccc
Q psy15240          2 KGHAPGAGC-QFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSG--KMFTSAEALKVGLID   78 (155)
Q Consensus         2 ~G~a~GgG~-~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g--~~~~a~eA~~~Glv~   78 (155)
                      -|.++|||+ .+.+.+|.+++- +++       .++..++.+.+..+.+-.  ..+.++.-.-  -..++..+.++|+||
T Consensus       115 ~g~a~ggg~lamg~~ad~v~Al-p~A-------~i~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd  184 (238)
T TIGR03134       115 YGKAISGAFLAHGLQADRIIAL-PGA-------MVHVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVH  184 (238)
T ss_pred             eCCccHHHHHHHccCcCeEEEc-CCc-------EEEecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCcc
Confidence            477888775 355457888877 666       555555555554444333  3334443221  246777899999999


Q ss_pred             eecCChhH
Q psy15240         79 EEVTSEEE   86 (155)
Q Consensus        79 ~v~~~~~~   86 (155)
                      +|++ +.+
T Consensus       185 ~vi~-~~~  191 (238)
T TIGR03134       185 ALLD-VAD  191 (238)
T ss_pred             EEeC-CCC
Confidence            9999 544

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.23  E-value=0.0071  Score=50.22  Aligned_cols=76  Identities=26%  Similarity=0.374  Sum_probs=53.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------H
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------L   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~   72 (155)
                      |.|+|+|||.-++..||++|++ ++ +.+       ++..|..             . + ..+|+.++.++.       .
T Consensus       138 v~G~~~Gg~A~~~~~~d~~i~~-~~~a~i-------~l~GP~v-------------v-~-~~~Ge~~~~~~lgG~~~h~~  194 (493)
T PF01039_consen  138 VTGPCTGGGAYLAALSDFVIMV-KGTARI-------FLAGPRV-------------V-E-SATGEEVDSEELGGADVHAA  194 (493)
T ss_dssp             EESEEEGGGGHHHHHSSEEEEE-TTTCEE-------ESSTHHH-------------H-H-HHHSSCTSHHHHHBHHHHHH
T ss_pred             EccccccchhhcccccCccccC-ccceEE-------Eeccccc-------------c-c-cccCccccchhhhhhhhhcc
Confidence            4699999999999999999999 65 644       3331111             1 1 234688887653       4


Q ss_pred             HcCccceecCChhHHHHHHHHHHHHHh
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                      ..|++|.+++|+++..+.+.+++.-+-
T Consensus       195 ~sG~~d~v~~de~~a~~~ir~~ls~lp  221 (493)
T PF01039_consen  195 KSGVVDYVVDDEEDALAQIRRLLSYLP  221 (493)
T ss_dssp             TSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred             cCCCceEEEechHHHHHHHHHhhcccc
Confidence            789999999976676777777666554

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.81  E-value=0.038  Score=40.40  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             CcccchHHHHHHhhccee--eeecCceeeecccccccccCChhH----------------HHHHHHhhCH--HHHHHHHh
Q psy15240          2 KGHAPGAGCQFAMSCEYR--IMVGPKYTIGLNETKMGIIAPFWF----------------VDTMVHTLGP--RQTELALT   61 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~--ia~~~~a~~~~~e~~~Gl~~~~~~----------------~~~l~~~~g~--~~a~~l~l   61 (155)
                      -|.|...|..|++++|..  ++. +++++-+....-|+. +...                ...+...-|.  .+-...+-
T Consensus        93 ~G~AaSmgs~l~~aG~~g~r~~l-PnsrimIHqP~gg~~-G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~d  170 (200)
T COG0740          93 MGQAASMGSVLLMAGDKGKRFAL-PNARIMIHQPSGGAQ-GQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTD  170 (200)
T ss_pred             ecHHHhHHHHHHhcCCCCCceeC-CCceEEEecCCccCc-cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhc
Confidence            355666677899999985  998 898888777763332 1111                0011111121  11122222


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q psy15240         62 SGKMFTSAEALKVGLIDEEVTS   83 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~~   83 (155)
                      ...-++++||+++||||+|.+.
T Consensus       171 rd~~msa~eA~~yGLiD~V~~~  192 (200)
T COG0740         171 RDTWMSAEEAKEYGLIDKVIES  192 (200)
T ss_pred             ccccCCHHHHHHcCCcceeccc
Confidence            3445899999999999999883

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.50  E-value=0.05  Score=45.99  Aligned_cols=77  Identities=18%  Similarity=0.255  Sum_probs=51.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-----H--H
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-----L--K   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-----~--~   73 (155)
                      |-|+|.|||.-+...||++|++++++.+.+       .             |+.... . .+|+.++.++.     +  .
T Consensus       212 v~G~~~gGgAy~~a~~D~vim~~~~a~i~~-------a-------------GP~vV~-~-~~Ge~v~~eeLGGa~~h~~~  269 (569)
T PLN02820        212 VLGSCTAGGAYVPAMADESVIVKGNGTIFL-------A-------------GPPLVK-A-ATGEEVSAEDLGGADVHCKV  269 (569)
T ss_pred             EeCCCChHHHHHHHhCCceEEecCCcEEEe-------c-------------CHHHHH-h-hcCcccCHHHhCCHHHhccc
Confidence            468999999999999999999944554443       2             111111 1 24555665544     3  4


Q ss_pred             cCccceecCChhHHHHHHHHHHHHHh
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                      -|.+|-+++|+.+..+.+++++.-|-
T Consensus       270 sGv~d~~~~de~~a~~~~R~lls~Lp  295 (569)
T PLN02820        270 SGVSDHFAQDELHALAIGRNIVKNLH  295 (569)
T ss_pred             ccccccccCchHHHHHHHHHHHHhcC
Confidence            79999999977777677777666663

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=95.43  E-value=0.091  Score=42.60  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=50.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhh
Q psy15240         93 TFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLIT---SPQVQKGLGLYLQS  151 (155)
Q Consensus        93 ~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~  151 (155)
                      +.++.|.+.+|.++..+-+++++....++++++..|.....+++.   ++|+.||+++-+-.
T Consensus       296 ~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiD  357 (401)
T PLN02157        296 TTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLID  357 (401)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcC
Confidence            334567788999999999999998888999999999999998885   69999999998653

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.074  Score=43.23  Aligned_cols=90  Identities=23%  Similarity=0.257  Sum_probs=65.7

Q ss_pred             cccchHHHHHHhhcceeeeecCceeeecccccccc---cCChh-HHHH------HHHhhC--HHHHHHHHhcCCCCCHHH
Q psy15240          3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI---IAPFW-FVDT------MVHTLG--PRQTELALTSGKMFTSAE   70 (155)
Q Consensus         3 G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl---~~~~~-~~~~------l~~~~g--~~~a~~l~l~g~~~~a~e   70 (155)
                      ++|.-+|.-++++||+.++. +.+.++-...-.+-   ..+.. ....      +.+.-|  ...|.+++.....++++|
T Consensus        97 a~AaSAGtyI~m~~hiaaMA-PgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~e  175 (436)
T COG1030          97 ARAASAGTYILMATHIAAMA-PGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEE  175 (436)
T ss_pred             cchhchhhHHHHhcChhhhC-CCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhH
Confidence            57888999999999999999 99988877755443   11111 1112      222333  357788999999999999


Q ss_pred             HHHcCccceecCChhHHHHHHHH
Q psy15240         71 ALKVGLIDEEVTSEEEAITRAET   93 (155)
Q Consensus        71 A~~~Glv~~v~~~~~~~~~~~~~   93 (155)
                      |.+.|++|-+..|..++.....-
T Consensus       176 A~~~~vid~iA~~~~ell~~~~g  198 (436)
T COG1030         176 ALRQGVIDLIARDLNELLKKLDG  198 (436)
T ss_pred             HHhcCccccccCCHHHHHHHccC
Confidence            99999999998876776655443

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=94.74  E-value=0.13  Score=39.76  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=48.0

Q ss_pred             hHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceecC
Q psy15240          7 GAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus         7 GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~   82 (155)
                      +||.--...+|.+++- ++++++.      ++|.++.+.+|..   ..++.+.. ..-.+++++.+++|+||.|++
T Consensus       201 SGGALAi~vad~V~ml-e~s~ySV------isPEG~AsILWkD---~~ka~eAA-e~mkita~dLk~lgiID~II~  265 (317)
T COG0825         201 SGGALAIGVADRVLML-ENSTYSV------ISPEGCASILWKD---ASKAKEAA-EAMKITAHDLKELGIIDGIIP  265 (317)
T ss_pred             chhhHHhhHHHHHHHH-Hhceeee------cChhhhhhhhhcC---hhhhHHHH-HHcCCCHHHHHhCCCcceecc
Confidence            3444444567999999 9998876      6777777766553   34444444 456899999999999999998

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=94.68  E-value=0.19  Score=42.04  Aligned_cols=91  Identities=15%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             CCcccchHHHHHHhh-----cceeeeecCceeeecccccccccCChhHHHHHH-HhhC----HHHH-HHHH--hcCCCCC
Q psy15240          1 MKGHAPGAGCQFAMS-----CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMV-HTLG----PRQT-ELAL--TSGKMFT   67 (155)
Q Consensus         1 v~G~a~GgG~~la~~-----cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~-~~~g----~~~a-~~l~--l~g~~~~   67 (155)
                      |-|.++|||. ++++     +|++|+- +++++       |+.++-+....+. +.+.    ...+ .+.+  +.-+..+
T Consensus       395 i~g~~~Gga~-~am~~~~~~~d~~~a~-p~a~~-------~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  465 (512)
T TIGR01117       395 ITRKAYGGAY-LAMCSKHLGADQVYAW-PTAEI-------AVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFAN  465 (512)
T ss_pred             EcCCCchHHH-HHhccccCCCCEEEEc-CCCeE-------eecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcC
Confidence            3478888764 4443     8998888 77654       4444444433332 2211    1111 1111  1223557


Q ss_pred             HHHHHHcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240         68 SAEALKVGLIDEEVTSEEEAITRAETFLAQYATI  101 (155)
Q Consensus        68 a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~  101 (155)
                      +..+.+.|+||.|++ +.+........++.+...
T Consensus       466 ~~~~a~~g~vD~VI~-P~~tR~~l~~~l~~~~~~  498 (512)
T TIGR01117       466 PYKAAARGYVDDVIE-PKQTRPKIVNALAMLESK  498 (512)
T ss_pred             HHHHHhcCCCCeeEC-hHHHHHHHHHHHHHHhcC
Confidence            889999999999999 999998888877765443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=94.38  E-value=0.11  Score=39.67  Aligned_cols=82  Identities=27%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             cccchHH-HHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240          3 GHAPGAG-CQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV   81 (155)
Q Consensus         3 G~a~GgG-~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~   81 (155)
                      .|..||- ..+++..|+.|+. +.+.++|.-.+       ..-++....++.         | .-+++-.++.|+||.||
T Consensus       204 ~PTtGGVsASfA~lGDi~iAE-P~AlIGFAGpR-------VIEQTire~LPe---------g-fQ~aEfLlehG~iD~iv  265 (294)
T COG0777         204 DPTTGGVSASFAMLGDIIIAE-PGALIGFAGPR-------VIEQTIREKLPE---------G-FQTAEFLLEHGMIDMIV  265 (294)
T ss_pred             CCCccchhHhHHhccCeeecC-cccccccCcch-------hhhhhhcccCCc---------c-hhhHHHHHHcCCceeee
Confidence            4566665 4699999999999 88766554433       222222222222         1 34567788999999999


Q ss_pred             CChhHHHHHHHHHHHHHhcCCh
Q psy15240         82 TSEEEAITRAETFLAQYATIPG  103 (155)
Q Consensus        82 ~~~~~~~~~~~~~a~~l~~~~~  103 (155)
                      + ..++......+...+...++
T Consensus       266 ~-R~elr~tla~ll~~~~~~~~  286 (294)
T COG0777         266 H-RDELRTTLASLLAKLTPQPA  286 (294)
T ss_pred             c-HHHHHHHHHHHHHHhCCCCC
Confidence            9 89999888888887776544

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=89.25  E-value=0.34  Score=40.50  Aligned_cols=79  Identities=25%  Similarity=0.347  Sum_probs=54.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHH-------HHH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAE-------ALK   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~e-------A~~   73 (155)
                      |-|+|.|||.=+-..||++|+. ++.      ..+.+.             |+... +. -+|+.++++|       +..
T Consensus       170 v~G~c~gGgaY~pal~D~~imv-~~~------~~mflt-------------GP~~i-k~-vtGe~V~~e~LGGa~vh~~~  227 (526)
T COG4799         170 VMGPCAGGGAYSPALTDFVIMV-RDQ------SYMFLT-------------GPPVI-KA-VTGEEVSAEELGGAQVHARK  227 (526)
T ss_pred             EEecCcccccccccccceEEEE-cCC------ccEEee-------------CHHHH-Hh-hcCcEeehhhccchhhhccc
Confidence            4699999999999999999999 663      222232             11111 11 2566666663       344


Q ss_pred             cCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQYATI  101 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l~~~  101 (155)
                      .|.+|-+.+|+++..+.+++++.-|-..
T Consensus       228 sGva~~~a~dd~~Ai~~vr~~lsylp~~  255 (526)
T COG4799         228 SGVADLLAEDDEDAIELVRRLLSYLPSN  255 (526)
T ss_pred             ccceeeeecCHHHHHHHHHHHHHhcCcc
Confidence            4999999998888888888877766543

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=87.89  E-value=3.3  Score=35.40  Aligned_cols=29  Identities=17%  Similarity=-0.038  Sum_probs=23.4

Q ss_pred             CCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240         65 MFTSAEALKVGLIDEEVTSEEEAITRAETF   94 (155)
Q Consensus        65 ~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~   94 (155)
                      ..++++|++.||||++.. .+++.+...+.
T Consensus       251 g~~a~~A~~~gLVD~l~~-~de~~~~l~~~  279 (584)
T TIGR00705       251 GDGARYALAEKLVTAVCS-YAEAGKALKFL  279 (584)
T ss_pred             CchHHHHHHCCCcccCCC-HHHHHHHHHHH
Confidence            347999999999999998 88877665543

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>smart00250 PLEC Plectin repeat

Probab=87.12  E-value=0.53  Score=24.79  Aligned_cols=18  Identities=44%  Similarity=0.744  Sum_probs=17.0

Q ss_pred             cCCCCCHHHHHHcCccce
Q psy15240         62 SGKMFTSAEALKVGLIDE   79 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~   79 (155)
                      +++++|..||.+.||+|.
T Consensus        18 t~~~lsv~eA~~~glid~   35 (38)
T smart00250       18 TGQKLSVEEALRRGLIDP   35 (38)
T ss_pred             CCCCcCHHHHHHcCCCCc
Confidence            899999999999999985

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=86.23  E-value=5.5  Score=33.99  Aligned_cols=90  Identities=10%  Similarity=0.017  Sum_probs=53.7

Q ss_pred             cccchHHHHHHh----hcceeeeecCceeeecccccccccCChhHHHHHHHh-h------------CHHHH-HHHH--hc
Q psy15240          3 GHAPGAGCQFAM----SCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-L------------GPRQT-ELAL--TS   62 (155)
Q Consensus         3 G~a~GgG~~la~----~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~------------g~~~a-~~l~--l~   62 (155)
                      |.|+|+|.--.+    ..|++++-        |..++|..++-+....+.+. +            -...+ ++.+  +.
T Consensus       448 g~a~G~g~~aM~g~~~~~d~~~aw--------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (569)
T PLN02820        448 GGSFGAGNYGMCGRAYSPNFLFMW--------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY  519 (569)
T ss_pred             CCcchHHHHHhcCcCCCCCEEEEC--------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence            678887754332    34555555        55567766666665555431 2            11101 1111  12


Q ss_pred             CCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240         63 GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATI  101 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~  101 (155)
                      -+..++-.+.+.|+||+|++ +.+........+..+...
T Consensus       520 ~~~~~p~~aa~~~~vD~VId-P~dTR~~l~~~l~~~~~~  557 (569)
T PLN02820        520 EREANPYYSTARLWDDGVID-PADTRRVLGLCLSAALNR  557 (569)
T ss_pred             HHhCCHHHHHHcCCcCcccC-HHHHHHHHHHHHHHhhcC
Confidence            23557778999999999999 998887777776655444

>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes

Probab=84.46  E-value=0.37  Score=26.47  Aligned_cols=20  Identities=35%  Similarity=0.675  Sum_probs=16.7

Q ss_pred             hcCCCCCHHHHHHcCcccee
Q psy15240         61 TSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus        61 l~g~~~~a~eA~~~Glv~~v   80 (155)
                      -+|+++|.++|.+.||||.-
T Consensus        17 ~tg~~lsv~~A~~~glId~~   36 (45)
T PF00681_consen   17 ETGERLSVEEAIQRGLIDSD   36 (45)
T ss_dssp             TTTEEEEHHHHHHTTSS-HH
T ss_pred             CCCeEEcHHHHHHCCCcCHH
Confidence            47899999999999999853

Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.

>PRK10949 protease 4; Provisional

Probab=84.40  E-value=6.6  Score=33.84  Aligned_cols=29  Identities=21%  Similarity=0.037  Sum_probs=23.8

Q ss_pred             CCCHHHHHHcCccceecCChhHHHHHHHHH
Q psy15240         65 MFTSAEALKVGLIDEEVTSEEEAITRAETF   94 (155)
Q Consensus        65 ~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~   94 (155)
                      ..++++|++.||||++.. .+++.+...+.
T Consensus       270 ~~~a~~Al~~GLVD~l~~-~de~~~~l~~~  298 (618)
T PRK10949        270 GDTAKYALDNKLVDALAS-SAEIEKALTKA  298 (618)
T ss_pred             CccHHHHHHCCCCCcCCC-HHHHHHHHHHH
Confidence            468999999999999988 88877665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		4e-38
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		2e-36
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-08
3ot6_A	232	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-06
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		1e-05
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-05
3r6h_A	233	Crystal Structure Of An Enoyl-Coa Hydratase (Echa3)		3e-05
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		5e-05
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-04
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-04
4hc8_A	255	Crystal Structure Of Probable Enoyl-Coa Hydratase E		4e-04
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		7e-04
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		7e-04
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		7e-04

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 106/156 (67%), Gaps = 2/156 (1%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
           + G +P  GC  A++C+YRIM    KYTIGLNE+ +GI+APFW  D  V+T+G R  E A
Sbjct: 105 INGASPAGGCLMALTCDYRIMADNSKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERA 164
Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           L  G +F  AEALKVGL+D EV  E++  ++A + +A++ TIP  +R+LTK M+R+ T  
Sbjct: 165 LQLGTLFPPAEALKVGLVD-EVVPEDQVHSKARSVMAKWFTIPDHSRQLTKSMMRKATAD 223
Query: 120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           NL++ +E D++N    I+   +QK L +YL+ LK+K
Sbjct: 224 NLIKQREADIQNFTSFISRDSIQKSLHVYLEKLKQK 259

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 2/156 (1%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELA 59
           + G  P  GC  A++C+YRI+   P+Y IGLNET++GIIAPFW  DT+ +T+G R  E A
Sbjct: 104 INGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERA 163
Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           L  G +F  AEAL+VG++D +V  EE+  + A + +AQ+  IP  AR+LTK M+R+ T S
Sbjct: 164 LQLGLLFPPAEALQVGIVD-QVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATAS 222
Query: 120 NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
            L+  ++ D++N V  I+   +QK L +YL+ LK++
Sbjct: 223 RLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 258

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A G G    ++C+ RI +     +  N  KMGI         +   +G  QT   L
Sbjct: 108 INGYAYGGGFNMMLACDRRIALRRAKFLE-NFHKMGISPDLGASYFLPRIIGYEQTMNLL 166
Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYAT--IPGAARKLTKLMLREKTI 118
             GK+FTS EAL++GLI E   +++E   R + +L   +   +P  A   TK +L+ K  
Sbjct: 167 LEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAA--TKKLLKGKAA 224
Query: 119 SNLMENKEKDLKNVVDLITSPQVQKGL 145
             L +  E++ + +V L    +++K L
Sbjct: 225 EELKQQLEQETEELVALFKQTEIKKRL 251

>pdb|3OT6|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN From Psudomonas Syringae Length = 232

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           GHA   G    +S +YRI V   ++IGLNE ++G       ++     L       ++ +
Sbjct: 103 GHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGXTXHHAGIELARDRLRKSAFNRSVIN 162
Query: 63  GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLM 122
            + F    A   G +D +V S EE    A    AQ   I   A K TKL +R+  +  L 
Sbjct: 163 AEXFDPEGAXAAGFLD-KVVSVEELQGAALAVAAQLKKINXNAHKKTKLKVRKGLLDTLD 221
Query: 123 ENKEKD 128
              E+D
Sbjct: 222 AAIEQD 227

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           ++GH  G G + A++C+ R        IGL E  +G++A       +   +G  +     
Sbjct: 108 LEGHTVGGGLEXALACDLRFXGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDXN 167
Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETF---LAQYATIPGAARKLTKLMLREKT 117
            +G+  T  EAL++GL++  V  + E   R   +   LA  AT   +  KL     +E  
Sbjct: 168 ITGETITPQEALEIGLVN-RVFPQAETRERTREYARKLANSATYAVSNIKLAIXNGKEXP 226
Query: 118 ISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQ 150
           + N+    E +L+N+  L  S   ++GL  +L+
Sbjct: 227 L-NVAIRYEGELQNL--LFRSEDAKEGLSAFLE 256

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELA 59
           + G A G G +FA SC  R        +GL E  +G+I  F     +   +G  +  E  
Sbjct: 105 IHGAALGGGLEFAXSCHXRFAT-ESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEXX 163
Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATI--------PGAARKLTKL 111
           LTS  + T AEALK GL++         +   ETFL     +        P  AR + +L
Sbjct: 164 LTSTPI-TGAEALKWGLVN--------GVFAEETFLDDTLKVAKQIAGKSPATARAVLEL 214
Query: 112 MLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK 153
           +   K+ S+  E  +++ +   ++ TS   ++G+  +L+  K
Sbjct: 215 LQTTKS-SHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRK 255

>pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From Mycobacterium Marinum Length = 233

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           GHA   G     S ++R+     Y +  NE  +G+  P+  ++ +   L P   + A   
Sbjct: 104 GHAIAMGAFLLCSGDHRV-AAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGL 162
Query: 63  GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118
            K F    AL  G IDE ++  E  ++RAE    ++A +   A   TKL  R + +
Sbjct: 163 AKTFFGETALAAGFIDE-ISLPEVVLSRAEEAAREFAGLNQQAHNATKLRARAEAL 217

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A GAG   A++ ++R+  G     G  E   G+I     +  +   +G  + +  +
Sbjct: 122 VTGYALGAGLTLALAADWRVS-GDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELV 180
Query: 61  TSGKMFTSAEALKVGLIDEEVTSEE 85
            SG+ F + EAL +GLID+ V  ++
Sbjct: 181 FSGRFFDAEEALALGLIDDMVAPDD 205

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G A G G + A+SC+  I+       G  E  +G++        +   +GP++    L
Sbjct: 102 VNGLALGGGFELALSCDL-IVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWL 160
Query: 61  TSGKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQYATIPGAARKLTKLMLREKT 117
            +G   ++ EA ++G+++  V+ E   EE +  A     + A  P  A +L K  +++  
Sbjct: 161 WTGARMSAKEAEQLGIVNRVVSPELLMEETMRLA----GRLAEQPPLALRLIKEAVQKAV 216
Query: 118 ISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
              L E  + + KN   L  S   ++G+  +L+  K +
Sbjct: 217 DYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPR 254

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A GAGC+ A+ C+  ++ G     GL E  +GI+        ++ ++G       +
Sbjct: 102 VNGYALGAGCELALLCDV-VVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMV 160
Query: 61  TSGKMFTSAEALKVGLIDEEVTSE 84
            SG+  T+ +A + GL+ +   S+
Sbjct: 161 LSGESITAQQAQQAGLVSDVFPSD 184

>pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3 (Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis H37rv Length = 255

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           GHA   G  F +SC    +    Y I  NE  +G   P+  ++     L     + A   
Sbjct: 104 GHAIAXGA-FLLSCGDHRVAAHAYNIQANEVAIGXTIPYAALEIXKLRLTRSAYQQATGL 162
Query: 63  GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNL 121
            K F    AL  G ID E+   E  ++RAE    ++A +   A   TKL  R   ++ +
Sbjct: 163 AKTFFGETALAAGFID-EIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAI 220

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 16  CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALTSGKMFTSAEALKV 74
           C YRI    K  +GL E  +GI+        +   +G P   +L +TSGK  ++ EAL++
Sbjct: 128 CHYRI-ANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDL-ITSGKYLSADEALRL 185
Query: 75  GLIDEEVTSE--EEAITRAETFL 95
           G++D  V S+  EEAI  A+  +
Sbjct: 186 GILDAVVKSDPVEEAIKFAQKII 208

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 16  CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-PRQTELALTSGKMFTSAEALKV 74
           C YRI    K  +GL E  +GI+        +   +G P   +L +TSGK  ++ EAL++
Sbjct: 113 CHYRI-ANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDL-ITSGKYLSADEALRL 170
Query: 75  GLIDEEVTSE--EEAITRAETFL 95
           G++D  V S+  EEAI  A+  +
Sbjct: 171 GILDAVVKSDPVEEAIKFAQKII 193

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G A G G +  ++ ++R+M      IGL E K+GI   F     +   +G       +
Sbjct: 110 INGIALGGGLEMCLAADFRVM-ADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWI 168
Query: 61  TSGKMFTSAEALKVGLIDEEVTSEE 85
            SGK   + +ALKV  +D  VT+++
Sbjct: 169 ASGKENRAEDALKVSAVDAVVTADK 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	2e-35
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	3e-31
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	1e-19
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-14
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	7e-13
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	7e-12
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	9e-12
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	1e-11
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	2e-11
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	2e-11
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	3e-11
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	4e-11
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	5e-11
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	6e-11
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	6e-11
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	7e-11
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	7e-11
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	1e-10
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-10
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	1e-10
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-10
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	2e-10
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	3e-10
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	3e-10
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	4e-10
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	9e-10
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-09
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-09
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-09
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	3e-09
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	3e-09
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	3e-09
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	5e-09
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	5e-09
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	5e-09
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	8e-09
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	8e-09
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	1e-08
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	3e-08
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	3e-08
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	5e-08
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	6e-08
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	9e-08
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	2e-07
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	2e-07
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-07
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-07
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	2e-07
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	2e-07
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	3e-07
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	4e-07
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	4e-07
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	4e-07
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	4e-07
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	5e-07
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	5e-07
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	6e-07
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	6e-07
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	7e-07
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	7e-07
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	9e-07
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	1e-06
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-06
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-06
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	2e-06
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	2e-06
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	2e-06
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	6e-06
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	7e-06
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	8e-06
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	5e-05

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  122 bits (309), Expect = 2e-35
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 3   GHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALT 61
           G  P  GC  A++C+YRI+   P+Y IGLNET++GIIAPFW  DT+ +T+G R  E AL 
Sbjct: 106 GACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQ 165

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNL 121
            G +F  AEAL+VG++D +V  EE+  + A + +AQ+  IP  AR+LTK M+R+ T S L
Sbjct: 166 LGLLFPPAEALQVGIVD-QVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRL 224

Query: 122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK 155
           +  ++ D++N V  I+   +QK L +YL+ LK++
Sbjct: 225 VTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE 258

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  111 bits (279), Expect = 3e-31
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTS 62
           GHA   G    +S +YRI V   ++IGLNE ++G+      ++     L       ++ +
Sbjct: 103 GHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVIN 162

Query: 63  GKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLM 122
            +MF    A+  G +D +V S EE    A    AQ   I   A K TKL +R+  +  L 
Sbjct: 163 AEMFDPEGAMAAGFLD-KVVSVEELQGAALAVAAQLKKINMNAHKKTKLKVRKGLLDTLD 221

Query: 123 ENKEKDLKNVV 133
              E+D ++++
Sbjct: 222 AAIEQDRQHML 232

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 80.7 bits (200), Expect = 1e-19
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
           GHA   G     S ++R+     Y +  NE  +G+  P+  ++ +   L P    + A  
Sbjct: 104 GHAIAMGAFLLCSGDHRVA-AHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGL 162

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             K F    AL  G ID E++  E  ++RAE    ++A +   A   TKL  R 
Sbjct: 163 -AKTFFGETALAAGFID-EISLPEVVLSRAEEAAREFAGLNQQAHNATKLRARA 214

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G+    G   A+  +  I       IG    ++  +          H LG ++   L  T
Sbjct: 166 GYCVAGGTDIALHADQVIA-AADAKIGYPPMRVWGVPAAGL---WAHRLGDQRAKRLLFT 221

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            G   T A+A + GL   E     +   R E  + + A +P     + KL    
Sbjct: 222 -GDCITGAQAAEWGLAV-EAPDPADLDARTERLVERIAAMPVNQLIMAKLACNT 273

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI----IAPFWFVDTMVHTLGPRQT-E 57
           G     G  F  + +  I      +  L+E   G+    + PF     ++  +G ++   
Sbjct: 109 GKVNAGGLGFVSATDIAI-ADQTASFSLSELLFGLYPACVLPF-----LIRRIGRQKAHY 162

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           + L   K  +  EA + GLID      +         L +   +        K  +  
Sbjct: 163 MTLM-TKPISVQEASEWGLIDAFDAESDVL---LRKHLLRLRRLNKKGIAHYKQFMSS 216

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G GC  A++C+  +   P     L  T++G++           +   +G  R + +
Sbjct: 101 GAAVGFGCSLALACDLVVA-APASYFQLAFTRVGLMPDGGASAL---LPLLIGRARTSRM 156

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           A+T  +  ++A A + G+I   +TS +E  +     L   +  P  A   TK  L  
Sbjct: 157 AMT-AEKISAATAFEWGMIS-HITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAA 211

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 59.5 bits (145), Expect = 1e-11
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G   GAG     +C++R    P+    +   K G++            +G  Q   +  +
Sbjct: 107 GRNFGAGVDLFAACKWRYC-TPEAGFRMPGLKFGLVLGTRRF---RDIVGADQALSILGS 162

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             + F + EA ++G +  +  ++ +     +        +  A R     +LR+
Sbjct: 163 -ARAFDADEARRIGFVR-DCAAQAQWPALIDAAAEAATALDPATRATLHRVLRD 214

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G+A G G    ++C+ RI    +     N  KMGI       +F   +   +G  +   L
Sbjct: 110 GYAYGGGFNMMLACDRRIA-LRRAKFLENFHKMGISPDLGASYF---LPRIIGYEQTMNL 165

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            L  GK+FTS EAL++GLI E   +++E   R + +L   +     A   TK +L+ 
Sbjct: 166 LLE-GKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKKLLKG 221

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 25/133 (18%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGPRQ---- 55
           G   G G   A+ C+ R              + G+IA F   W +        PR     
Sbjct: 139 GPCVGIGLTQALMCDVRFA-AAGAKFAAVFARRGLIAEFGISWIL--------PRLTSWA 189

Query: 56  --TELALTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATIPGAARKLTK 110
              +L L+ G+ F + EA ++GL+ E VT E+    A+  AE      +     +  + K
Sbjct: 190 VALDLLLS-GRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPS---SMAVIK 245

Query: 111 LMLREKTISNLME 123
             +      +++E
Sbjct: 246 RQVYGDATRDVVE 258

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 23/107 (21%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PR--Q 55
           G A G G + A+ C YRI    K  +GL E  +GI+ P                 PR   
Sbjct: 115 GVALGGGLELALGCHYRIAN-AKARVGLPEVTLGIL-PGA---------RGTQLLPRVVG 163

Query: 56  TELAL---TSGKMFTSAEALKVGLIDEEVTSE--EEAITRAETFLAQ 97
             +AL   TSGK  ++ EAL++G++D  V S+  EEAI  A+  + +
Sbjct: 164 VPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDK 210

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGPRQ-TEL 58
           G A G         +       + T     + +G        +        + P + TE+
Sbjct: 130 GPAVGISVTLLGLFDAVYA-SDRATFHTPFSHLGQSPEGCSSYT---FPKIMSPAKATEM 185

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118
            +  GK  T+ EA   GL+  EV  +        T L  +A +P  A +++K ++R++  
Sbjct: 186 LIF-GKKLTAGEACAQGLVT-EVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKRER 243

Query: 119 SNLME 123
             L  
Sbjct: 244 EKLHA 248

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 11/118 (9%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF----WFVDTMVHTLGP-RQTE 57
           G A GAG   A++ ++R+   P        T++G+        +    +   +G    T 
Sbjct: 122 GVAAGAGAVLALAADFRVA-DPSTRFAFLFTRVGLSGGDMGAAYL---LPRVVGLGHATR 177

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           L +  G    + EA ++GLI  E+T E  A   A T   + A  P  A   TK +L  
Sbjct: 178 LLML-GDTVRAPEAERIGLIS-ELTEEGRADEAARTLARRLADGPALAHAQTKALLTA 233

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 57.5 bits (140), Expect = 6e-11
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII----APFWFVDTMVHTLGPRQT-E 57
           G A G G   A +C+  I          +E K+G+I    +P+     +V  +G R    
Sbjct: 108 GAAFGGGAGLAAACDIAIAS-TSARFCFSEVKLGLIPAVISPY-----VVRAIGERAAKM 161

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           L ++  ++F +  A  + L+      ++  +     + +Q +     A K +K + + 
Sbjct: 162 LFMS-AEVFDATRAYSLNLVQ-HCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQY 217

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A GAG   A+  +  +       I    TK+G+ A              +G  +    
Sbjct: 116 GPAVGAGLVVALLADISVA-SATAKIIDGHTKLGVAAGDHAAIC---WPLLVGMAKAKYY 171

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            LT  +  +  EA ++GL+      ++E +  A       A     A + TK  L  
Sbjct: 172 LLT-CETLSGEEAERIGLVS-TCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNH 226

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 57.2 bits (139), Expect = 7e-11
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           GH+ G G    +  ++ +    +     N  K G             +   LG     E+
Sbjct: 99  GHSFGGGLLLGLYADFVVF-SQESVYATNFMKYGFTPVGATSLI---LREKLGSELAQEM 154

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             T G+ +   E  + G+    V S ++ +  A+    + A  P  +    K  L  
Sbjct: 155 IYT-GENYRGKELAERGIPF-PVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSA 209

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 25/125 (20%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGPRQ---- 55
           GHA G G   A+  + RI+   +    + + + G+       W +        PR     
Sbjct: 107 GHAIGIGMTLALHADIRIL-AEEGRYAIPQVRFGVAPDALAHWTL--------PRLVGTA 157

Query: 56  --TELALTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATIPGAARKLTK 110
              EL LT G  F++  A++ GL +  + + +    A+  A       A     +  LTK
Sbjct: 158 VAAELLLT-GASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPE---SAALTK 213

Query: 111 LMLRE 115
            +L +
Sbjct: 214 RLLWD 218

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
           G A GAG Q AM C+ R++  P        +K G+    W +  +   +G  R   + L+
Sbjct: 116 GPAIGAGLQLAMQCDLRVV-APDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLS 174

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             +  T+  AL  G+ +  + +  +A   A   +A+ A +   A +  K +L +
Sbjct: 175 -AEKLTAEIALHTGMAN-RIGTLADAQAWAAE-IARLAPL---AIQHAKRVLND 222

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A GAG   A++C++R++   K +       +G++      ++   +   +G  +  EL
Sbjct: 103 GAAAGAGMSLALACDFRLL-SEKASFAPAFIHVGLVPDAGHLYY---LPRLVGRAKALEL 158

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           A+  G+  T+ EA  +GL   +V    +     + F  + + +P  A  L K +LRE
Sbjct: 159 AVL-GEKVTAEEAAALGLAT-KVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRE 213

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G A  AG Q   +C+      P     L   + G       V  +   +G R   E+ALT
Sbjct: 113 GIATAAGLQLMAACDLAYA-SPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALT 170

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            G  + +  AL  GLI+  +  E    T         A    A  +     L  
Sbjct: 171 -GATYDADWALAAGLIN-RILPEAALATHVADLAGALAARNQAPLRRGLETLNR 222

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PR--Q 55
           G A G G + AM+C  RI   P   +GL E ++G+I P +         G     PR   
Sbjct: 111 GLALGGGLELAMACHARISA-PAAQLGLPELQLGVI-PGF---------GGTQRLPRLVG 159

Query: 56  TELAL---TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYA 99
              AL    + K   + E   +GLID  V    E +T A  +     
Sbjct: 160 LTKALEMILTSKPVKAEEGHSLGLID-AVVPPAELVTTARRWALDIV 205

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 24/114 (21%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G A G G +  ++ ++R+M      IGL E K+GI  P +         G     PR   
Sbjct: 112 GIALGGGLEMCLAADFRVMA-DSAKIGLPEVKLGIY-PGF---------GGTVRLPRLIG 160

Query: 57  -ELAL---TSGKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQYATIPG 103
            + A+    SGK   + +ALKV  +D  VT++     A+   +  ++       
Sbjct: 161 VDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA 214

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
             A GAG   A++ +  ++ G    +     ++G+ A              +G  +    
Sbjct: 113 KVAVGAGLALALAADIAVV-GKGTRLLDGHLRLGVAAGDHAVLL---WPLLVGMAKAKYH 168

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            L   +  T  EA ++GL+      +E+   +A     + A  P  A   TK  L  
Sbjct: 169 LLL-NEPLTGEEAERLGLVA-LAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNH 223

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 15/118 (12%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGI----IAPFWFVDTMVHTLGPRQT-E 57
           GH    G     +C+  +  GP+ +  L E ++G+    I+       ++  L  R    
Sbjct: 117 GHVRAGGFGLVGACDIAVA-GPRSSFALTEARIGVAPAIISLT-----LLPKLSARAAAR 170

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             LT G+ F +  A ++GLI       E+     +  +             +K +   
Sbjct: 171 YYLT-GEKFDARRAEEIGLITMAA---EDLDAAIDQLVTDVGRGSPQGLAASKALTTA 224

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 13/151 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G        C+    +  K  +      +G+I           +    G     E 
Sbjct: 121 GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS---LPLKFGTNTTYEC 177

Query: 59  ALTSGKMFTSAEALKVGLI-----DEEVTSEEEAITRAETFLAQYATIPGAARKLTKLML 113
            +   K F      + G I          +E       E    +   +   +    K +L
Sbjct: 178 LMF-NKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLL 236

Query: 114 REKTISNLMENKEKDLKNVVDLITSPQVQKG 144
           +   I    +    ++   +      +  K 
Sbjct: 237 KSNHIDAFNKANSVEVNESLKYWVDGEPLKR 267

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 54.5 bits (132), Expect = 9e-10
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF----WFVDTMVHTLGP-RQTE 57
           G A G G   A++C+ R+               G+ A      + +   +   G  R ++
Sbjct: 132 GAAIGGGLCLALACDVRVA-SQDAYFRAAGINNGLTASELGLSYLLPRAI---GTSRASD 187

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKT 117
           + LT G+   + EA ++GL+     + E  +        + A       +LTK  +    
Sbjct: 188 IMLT-GRDVDADEAERIGLVS-RKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGL 245

Query: 118 ISNLME 123
            +  +E
Sbjct: 246 DAASLE 251

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 19/127 (14%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIA--------PFWFVDTMVHTLGP- 53
           G A G G +F  + +          +G  E  MGII                    +G  
Sbjct: 115 GKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLR--------GRVGRN 166

Query: 54  RQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLML 113
           R  E+ LT   +F +  A   G I+      +E     +      A +P    +  K  L
Sbjct: 167 RALEVVLT-ADLFDAETAASYGWIN-RALPADELDEYVDRVARNIAALPDGVIEAAKRSL 224

Query: 114 REKTISN 120
               +  
Sbjct: 225 PADDLKE 231

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
           G A G G    + C+  +           +  +G     +    +   +G     E+   
Sbjct: 176 GWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFL 235

Query: 62  SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQ 97
            G+ +T+ +  ++G ++      E     +  A    A+
Sbjct: 236 -GRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 273

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G G      C+       K       T  G             ++   G     E+
Sbjct: 110 GPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFGQSPDGCSTVMFPKIM---GGASANEM 165

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            L+ G+  T+ EA   GL+  +V             + + A+      + +K ++R 
Sbjct: 166 LLS-GRKLTAQEACGKGLVS-QVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRC 220

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 10/126 (7%)

Query: 3   GHAPGAGCQFAMSCEYRIMV-GPKYTIGLNETKMGIIAPFWF----VDTMVHTLGPRQTE 57
           G   G G + A++C+   +V     ++ L E  +  + P       V         R   
Sbjct: 138 GACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADI 197

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSE---EEAITRAETFLAQYATIPGAARKLTKLMLR 114
                 +      A    L+DE V      +    RA   LA  +  P  A+ +    + 
Sbjct: 198 FCTV-VEGVRGERAKAWRLVDEVVKPNQFDQAIQARALE-LAAQSDRPAHAQGVPLTRIE 255

Query: 115 EKTISN 120
                +
Sbjct: 256 RTDRED 261

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G G    +  +            +    +G+            +V   G  +  EL
Sbjct: 108 GVAIGIGVTILLQADLVFA-DNTALFQIPFVSLGLSPEGGASQL---LVKQAGYHKAAEL 163

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             T  K F +  AL+ GL++E V   E+A   A+        +P A+ K TK +++ 
Sbjct: 164 LFT-AKKFNAETALQAGLVNEIV---EDAYATAQATAQHLTALPLASLKQTKALMKH 216

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 12/117 (10%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G GC      +   +      +     ++G++A              +      E 
Sbjct: 131 GPAVGLGCSLVALSDIVYI-AENAYLADPHVQVGLVAADGGPLT---WPLHISLLLAKEY 186

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           ALT G   ++  A+++GL +      ++ +  A     +   +P  A + TK +L  
Sbjct: 187 ALT-GTRISAQRAVELGLANHVA---DDPVAEAIACAKKILELPQQAVESTKRVLNI 239

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score = 52.5 bits (127), Expect = 5e-09
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G   G G       +   M      +    T +G+       +    +   +G      L
Sbjct: 108 GLGVGIGATILGYADLAFM-SSTARLKCPFTSLGVAPEAASSYL---LPQLVGRQNAAWL 163

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI 118
            ++  +   + EAL++GL+   + S EE +  A       A  P ++    K  + E   
Sbjct: 164 LMS-SEWIDAEEALRMGLVW-RICSPEELLPEARRHAEILAAKPISSLMAVKHTMVEPNR 221

Query: 119 SNLME 123
           + +  
Sbjct: 222 AQIAA 226

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G G      C+       K       T  G                 +G     E+
Sbjct: 128 GPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFGQSPDGCSSIT---FPKMMGKASANEM 183

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            +  G+  T+ EA   GL+  +V             + + A+      +  K ++R 
Sbjct: 184 LIA-GRKLTAREACAKGLVS-QVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRC 238

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 52.1 bits (126), Expect = 5e-09
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF--WFVDTMVHTLGP-RQTELA 59
           G+A G G QFA+  + R+M        + E K GI           +  T G     E+ 
Sbjct: 103 GYAIGMGFQFALMFDQRLM-ASTANFVMPELKHGIGCSVGAAI---LGFTHGFSTMQEII 158

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
               +   +   +   L++ +V      +  A T     A+ P +A   TK
Sbjct: 159 YQ-CQSLDAPRCVDYRLVN-QVVESSALLDAAITQAHVMASYPASAFINTK 207

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 51.7 bits (125), Expect = 8e-09
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF--WFVDTMVHTLGPRQT-ELA 59
           G A   G   A++C+  +M   +  +G  E K+G +A      +   V  +G +   +L 
Sbjct: 103 GPAVAGGAGLALACDLVVM-DEEARLGYTEVKIGFVAALVSVIL---VRAVGEKAAKDLL 158

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
           LT G++  + EA  +GL++  +    +A+  A+    + A     + +LTK +L  
Sbjct: 159 LT-GRLVEAREAKALGLVN-RIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLA 212

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A G G   +++ +  I              +GI       +    +   +G  R  EL
Sbjct: 109 GVAAGGGLGISLASDMAIC-ADSAKFVCAWHTIGIGNDTATSYS---LARIVGMRRAMEL 164

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            LT  +     EA   GL+   V  ++E    A     + A  P   + + K     
Sbjct: 165 MLT-NRTLYPEEAKDWGLVS-RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHA 219

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 23/119 (19%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G A GAG +F ++C+ R        +G  E  +G               G      R   
Sbjct: 112 GRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGA----------GAIQHLTRLLG 161

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
                E  LT    F +  A + G ++     + E         A+ +  P  A    K
Sbjct: 162 RGRALEAVLT-SSDFDADLAERYGWVN-RAVPDAELDEFVAGIAARMSGFPRDALIAAK 218

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 24/125 (19%), Positives = 36/125 (28%), Gaps = 27/125 (21%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG------PRQT 56
           G A G G Q  +  +  +         L   K GII             G       R  
Sbjct: 293 GFAIGGGAQLLLVFDRVL-ASSDAYFSLPAAKEGIIP------------GAANLRLGRFA 339

Query: 57  ------ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
                 ++ L  G+   + E     L+D EV   +E     E  L +       A +   
Sbjct: 340 GPRVSRQVILE-GRRIWAKEPEARLLVD-EVVEPDELDAAIERSLTRLDGDAVLANRRML 397

Query: 111 LMLRE 115
            +  E
Sbjct: 398 NLADE 402

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII--APFWFVDTMVHTLGPRQT-ELA 59
           G A  AGCQ    C+  +         ++   +G+    P   +      +G +   E+ 
Sbjct: 128 GIATAAGCQLVAMCDLAVA-TRDARFAVSGINVGLFCSTPGVAL---SRNVGRKAAFEML 183

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
           +T G+  ++ +A  +GL++  V + +      E  +++    P AA  + K
Sbjct: 184 VT-GEFVSADDAKGLGLVN-RVVAPKALDDEIEAMVSKIVAKPRAAVAMGK 232

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 17/116 (14%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF-------WFVDTMVHTLGP-R 54
           GH  G G + A++C+ R M      IGL E  +G++A           +       G  R
Sbjct: 110 GHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLI-------GYSR 162

Query: 55  QTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
             ++ +T G+  T  EAL++GL+   V  + E   R   +  + A     A    K
Sbjct: 163 ALDMNIT-GETITPQEALEIGLV-NRVFPQAETRERTREYARKLANSATYAVSNIK 216

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT--ELAL 60
           G   G G     +C+ R          + E  +G+ A    +  +   +G R    EL  
Sbjct: 116 GGCIGGGVDLISACDIRYC-TQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTF 174

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLML---REKT 117
           T  +   + EAL  GL+      ++  +  A    A  ++    A + +K+ L   R+ +
Sbjct: 175 T-ARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHS 233

Query: 118 IS 119
           + 
Sbjct: 234 VD 235

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 48.7 bits (117), Expect = 9e-08
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 24/124 (19%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQ-- 55
           G A   G + A+ C+  I             ++G++  +          G     P++  
Sbjct: 101 GAAVTGGLELALYCDILIA-SENAKFADTHARVGLMPTW----------GLSVRLPQKVG 149

Query: 56  ----TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKL 111
                 ++LT G   ++ +AL+ GL+  EV + ++ +T A    A        A +    
Sbjct: 150 VGLARRMSLT-GDYLSAQDALRAGLVT-EVVAHDDLLTAARRVAASIVGNNQKAVRALLD 207

Query: 112 MLRE 115
               
Sbjct: 208 SYHR 211

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           GHA   G + A+ C+ R++      +G+   + G+         +   +G  +  +L LT
Sbjct: 110 GHAVAGGIELALWCDLRVV-EEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILT 168

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            G+   + EAL +GL++  V +  +A   AET  A+ A  P    +  +     
Sbjct: 169 -GRPVHANEALDIGLVN-RVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIA 220

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 12/118 (10%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIG-LNETKMGIIAPF---WFVDTMVHTLGP-RQTE 57
           G       +  +  +  +      T         GI+             H LG  R   
Sbjct: 117 GPV-TNAPEIPVMSDIVLA-AESATFQDGPHFPSGIVPGDGAHVV---WPHVLGSNRGRY 171

Query: 58  LALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             LT G+   +  AL  G ++ EV SE+E + RA       A  P  AR+  + +L  
Sbjct: 172 FLLT-GQELDARTALDYGAVN-EVLSEQELLPRAWELARGIAEKPLLARRYARKVLTR 227

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 24/119 (20%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G+A GAG   A++ ++R+  G     G  E   G+I             G      R   
Sbjct: 124 GYALGAGLTLALAADWRVS-GDNVKFGATEILAGLIPGG----------GGMGRLTRVVG 172

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
                EL  + G+ F + EAL +GLID ++ + ++    A  +  +Y   P  A    K
Sbjct: 173 SSRAKELVFS-GRFFDAEEALALGLID-DMVAPDDVYDSAVAWARRYLECPPRALAAAK 229

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 24/124 (19%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G    AG +  ++ +  +           E   GI              G     PR   
Sbjct: 114 GTCWTAGIELMLNADIAV-AARGTRFAHLEVLRGIPPLG----------GSTVRFPRAAG 162

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKL 111
                   LT G  F + EAL++ L+  EV    E + RA  +  + A     A +    
Sbjct: 163 WTDAMRYILT-GDEFDADEALRMRLLT-EVVEPGEELARALEYAERIARAAPLAVRAALQ 220

Query: 112 MLRE 115
              +
Sbjct: 221 SAFQ 224

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G   G G    ++C+  I    + T GL+E   GI         M  T+G RQ+    +T
Sbjct: 115 GWCFGGGFSPLVACDLAIC-ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMT 173

Query: 62  SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATI 101
            GK F   +A ++GL++E V   +     I  A   L +   +
Sbjct: 174 -GKTFGGQKAAEMGLVNESVPLAQLREVTIELARN-LLEKNPV 214

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
           G+A G GC+ AM C+  I        G  E K+G++        +   +G  +  +L LT
Sbjct: 124 GYALGGGCELAMMCDVLI-AADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILT 182

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
            G+   +AEA + GL+   V   ++ +T A       + +  +A ++ K
Sbjct: 183 -GRTMDAAEAERSGLVS-RVVPADDLLTEARATATTISQMSASAARMAK 229

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
           G+A G GC+ AM C+  I        G  E  +GI+        +   +G  +  +L LT
Sbjct: 109 GYALGGGCELAMLCDLVI-AADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLT 167

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
            G+  T+ EA +VGL+   +    + +  A     + A +   A +  K
Sbjct: 168 -GRSLTAEEAERVGLVS-RIVPAADLLDEALAVAQRIARMSRPAGRAVK 214

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 16/114 (14%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT--LGPRQT-ELA 59
           G     G      C+  I              M I      V+   HT  LGPR+  E+ 
Sbjct: 126 GRCISGGLLLCWPCDLIIA-AEDALFSDPVVLMDIGG----VEYHGHTWELGPRKAKEIL 180

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQYATIPGAARKLTK 110
            T G+  T+ E  + G+++  V  +    E    A   +A+       A +  K
Sbjct: 181 FT-GRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGE-IAKMPPF---ALRQAK 229

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
           G A G G + A+SC+  +        G  E  +G++        +   +GP R  E   T
Sbjct: 104 GLALGGGFELALSCDLIVA-SSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWT 162

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
            G   ++ EA ++G+++  V S E  +        + A  P  A +L K
Sbjct: 163 -GARMSAKEAEQLGIVN-RVVSPELLMEETMRLAGRLAEQPPLALRLIK 209

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALT 61
           G+A G GC+ AM C+     G K   G  E  +G I        +   +G     E+ LT
Sbjct: 106 GYALGGGCELAMMCDIIY-AGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLT 164

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
            G   ++ +A + GL+  ++   E  +  A     + A        + K
Sbjct: 165 -GDRISAQDAKQAGLVS-KIFPVETLVEEAIQCAEKIANNSKIIVAMAK 211

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 23/124 (18%), Positives = 35/124 (28%), Gaps = 24/124 (19%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G     G + A++ +  I      T    E   GI              G     PR   
Sbjct: 111 GKVLTLGIELALAADIVIA-DETATFAQLEVNRGIYPFG----------GATIRFPRTAG 159

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKL 111
                   LT    F + EA ++G++  E+    E +  A       A       + T  
Sbjct: 160 WGNAMRWMLT-ADTFDAVEAHRIGIVQ-EIVPVGEHVDTAIAIAQTIARQAPLGVQATLR 217

Query: 112 MLRE 115
             R 
Sbjct: 218 NARL 221

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 24/100 (24%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G   G GC+     + R+      T GL E + G++             G      RQ  
Sbjct: 111 GACLGGGCEMLQQTDIRV-SDEHATFGLPEVQRGLVPGA----------GSMVRLKRQIP 159

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
                E+ LT G+  T+ EA   GL+   V     A+ +A
Sbjct: 160 YTKAMEMILT-GEPLTAFEAYHFGLVG-HVVPAGTALDKA 197

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF---WFVDTMVHTLGP-RQTEL 58
           G A     ++ ++ +  +         +     GI+               LG  R    
Sbjct: 126 GAALL-HSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHIL---WPLALGLYRGRYF 181

Query: 59  ALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
             T  +  T+ +A ++ ++  EV  + + + RA       A  P    + T++ L +
Sbjct: 182 LFT-QEKLTAQQAYELNVV-HEVLPQSKLMERAWEIARTLAKQPTLNLRYTRVALTQ 236

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 24/119 (20%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQ-- 55
           G   G G + A +   R+         L E   GI              G     PR   
Sbjct: 115 GAVIGGGLELACAAHIRV-AEASAYYALPEGSRGIFVGG----------GGSVRLPRLIG 163

Query: 56  ----TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
                ++ LT G+++++AE +  G     +     A  +A     + A           
Sbjct: 164 VARMADMMLT-GRVYSAAEGVVHGFSQ-YLIENGSAYDKALELGNRVAQNAPLTNFAVL 220

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPF-------WFVDTMVHTLGPRQ 55
           G+A G G + A+SC   I       +GL E    +             +           
Sbjct: 149 GNALGGGFEAALSCHTII-AEEGVMMGLPEVLFDLFPGMGAYSFMCQRI-------SAHL 200

Query: 56  -TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAAR 106
             ++ L  G ++++ + L +GL+D  V    + +   E  + +    P A  
Sbjct: 201 AQKIMLE-GNLYSAEQLLGMGLVD-RVVPRGQGVAAVEQVIRESKRTPHAWA 250

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 46.3 bits (111), Expect = 7e-07
 Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 24/119 (20%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G A G G +FAMSC  R        +GL E  +G+I  F                PR   
Sbjct: 107 GAALGGGLEFAMSCHMRF-ATESAKLGLPELTLGLIPGF----------AGTQRLPRYVG 155

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
                E+ LT     T AEALK GL++  V +EE  +        Q A    A  +   
Sbjct: 156 KAKACEMMLT-STPITGAEALKWGLVN-GVFAEETFLDDTLKVAKQIAGKSPATARAVL 212

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 26/109 (23%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G A G G + +++C++RI      ++GL ET + II             G     PR   
Sbjct: 111 GIALGGGTELSLACDFRIA-AESASLGLTETTLAIIPGA----------GGTQRLPRLIG 159

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQ 97
                EL  T G+  ++ EA + GL++  V       +AI  AE   + 
Sbjct: 160 VGRAKELIYT-GRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G A   G +     + R+        G++E K  +              G      RQ  
Sbjct: 124 GPAIAGGTEILQGTDIRVA-AESAKFGISEAKWSLYPMG----------GSAVRLVRQIP 172

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
                +L LT G+  T+AEA ++GL+   V  + +A+T+A
Sbjct: 173 YTVACDLLLT-GRHITAAEAKEMGLVG-HVVPDGQALTKA 210

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDT--MVHTLGP-RQTELA 59
           G   G   +  MS +  I      T  +    +G+      V    +    G     EL 
Sbjct: 105 GSVWGGAFEMIMSSDLIIA-ASTSTFSMTPVNLGVPYN--LVGIHNLTRDAGFHIVKELI 161

Query: 60  LTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTK 110
            T     T+  AL VG+++  V   EE            +     A  + K
Sbjct: 162 FT-ASPITAQRALAVGILN-HVVEVEELEDFTLQMAHHISEKAPLAIAVIK 210

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 17/100 (17%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII--APFWFVDTMV---HTLGPRQT- 56
           G A  AGCQ   SC+  +    K +       +G+    P       V     +  +   
Sbjct: 135 GLATAAGCQLVASCDIAV-ASDKSSFATPGVNVGLFCSTP------GVALARAVPRKVAL 187

Query: 57  ELALTSGKMFTSAEALKVGLIDEEVTSE---EEAITRAET 93
           E+  T G+  ++ EAL  GL+ + V      EE +  A  
Sbjct: 188 EMLFT-GEPISAQEALLHGLLSKVVPEAELQEETMRIARK 226

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 30/113 (26%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQ-- 55
           G A G G + A++C+ R+       +GL ETK+ II             G     PR   
Sbjct: 114 GLALGGGLELALACDIRVA-ASSAKMGLVETKLAIIPGG----------GGTQRLPRAIG 162

Query: 56  ----TELALTSGKMFTSAEALKVGLIDEEVTSEE-------EAITRAETFLAQ 97
                EL  +  ++    EA  VGLI   +   +       +A+  A  FL Q
Sbjct: 163 MSLAKELIFS-ARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 214

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G A   G +  +SC+  +  G     G+ E K G++A    +  + + +  +   ELALT
Sbjct: 102 GFALAGGTELVLSCDLVV-AGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALT 160

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
            G+ FT+ +A K G I+  +  + +A+  A    A+       A   TK ++ E
Sbjct: 161 -GESFTAEDAAKYGFIN-RLVDDGQALDTALELAAKITANGPLAVAATKRIIIE 212

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 24/100 (24%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG-----PRQT- 56
           G A G G + A++ +  +    +   GL E K G+IA            G       Q  
Sbjct: 110 GTALGGGTELALASDLVVA-DERAQFGLPEVKRGLIAAA----------GGVFRIAEQLP 158

Query: 57  -----ELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
                 L LT G+  ++A A   GLI+ EV      +  A
Sbjct: 159 RKVAMRLLLT-GEPLSAAAARDWGLIN-EVVEAGSVLDAA 196

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G+A   G + A++ +  +        G+ E K G++A    +  +   +      ELALT
Sbjct: 111 GYALAGGTELALATDLIV-AARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALT 169

Query: 62  SGKMFTSAEALKVGLIDEEVTSEEEAITRA 91
            G   ++  A  +G+++  +     A+  A
Sbjct: 170 -GDNLSAERAHALGMVN-VLAEPGAALDAA 197

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G+A G G    + C+  I        G    K+G     +    +   +G ++  E+   
Sbjct: 116 GYAVGGGNVLNVVCDLTI-AADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 174

Query: 62  SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLAQ 97
             + + + EAL +GL++  V  E+   E +   +  +  
Sbjct: 175 -CRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G++ G G    M C+  I        G    K+G     W    M   +G ++  E+   
Sbjct: 132 GYSIGGGHVLHMMCDLTIA-ADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFL 190

Query: 62  SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLA 96
             + + + +AL +GL++  V   +   E +      L 
Sbjct: 191 -CRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQ 227

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 27/126 (21%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLG------PRQT 56
           G   GAG  +  + +  I    + T       +G++A            G       R  
Sbjct: 119 GICCGAGMDWVTTTDIVIA-SEQATFFDPHVSIGLVA------------GRELVRVSRVL 165

Query: 57  ------ELALT-SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLT 109
                  +AL    +  ++  A ++GLI  E+   +  + RA        +    A + T
Sbjct: 166 PRSIALRMALMGKHERMSAQRAYELGLIS-EIVEHDRLLERAHEIADIVNSNAPLAVRGT 224

Query: 110 KLMLRE 115
           +L + +
Sbjct: 225 RLAILK 230

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 3   GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQT-ELALT 61
           G+A G G    + C+  I        G    K+G     +    +   +G ++  E+   
Sbjct: 118 GYAIGGGHVLHLVCDLTI-AADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYL 176

Query: 62  SGKMFTSAEALKVGLIDEEVTSEE---EAITRAETFLA 96
             + +++ EA ++G+++  V  +    E I  A+  L+
Sbjct: 177 -CRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILS 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	99.97
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	99.94
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.53
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.5
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.46
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.31
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.3
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.24
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.18
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.96
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.55
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	97.9
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	97.89
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	97.88
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	97.85
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.72
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	97.63
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.61
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.52
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.39
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.36
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.19
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.12
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.12
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.11
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.71
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	96.18
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	96.18
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	95.56
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.24
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	94.91
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	93.98
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	91.42
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	91.16
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	88.33
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	85.77
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	84.46
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	82.44

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=2e-42  Score=260.51  Aligned_cols=153  Identities=19%  Similarity=0.211  Sum_probs=149.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|.++|++++++|++|+++||+++||||+|
T Consensus        98 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~v  176 (254)
T 3hrx_A           98 VNGVAAGAGMSLALWGDLRLAA-VGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRV  176 (254)
T ss_dssp             ECSEEETHHHHHHTTCSEEEEE-TTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCEeeehhhhhhhccceeeEc-CCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++++..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       177 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~  250 (254)
T 3hrx_A          177 VP-AEKLMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPR  250 (254)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             cC-cHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            99 899999999999999999999999999999999988999999999999999999999999999999999985

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=6.6e-42  Score=258.15  Aligned_cols=153  Identities=20%  Similarity=0.315  Sum_probs=149.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       102 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~GLv~~v  180 (258)
T 4fzw_A          102 VNGYALGAGCELALLCDVVVAG-ENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDV  180 (258)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             EcCcceeeeeEeecccceEEEC-CCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHCCCeeEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       181 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~  254 (258)
T 4fzw_A          181 FP-SDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPD  254 (258)
T ss_dssp             EC-TTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             eC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCC
Confidence            99 899999999999999999999999999999999888999999999999999999999999999999999985

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.6e-41  Score=257.97  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=148.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       118 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~v  196 (274)
T 4fzw_C          118 VNGVAAGAGATLALGGDIVIAA-RSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQV  196 (274)
T ss_dssp             ECSCEETHHHHHHHTSSEEEEE-TTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEE
T ss_pred             ECCceeecCceeeeccceEEEC-CCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCceEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++.+.+.+++++++..||.+++.+|++++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       197 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~  270 (274)
T 4fzw_C          197 VD-DETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQ  270 (274)
T ss_dssp             EC-GGGHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCC
T ss_pred             eC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCC
Confidence            99 899999999999999999999999999999999888999999999999999999999999999999999985

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-40  Score=251.67  Aligned_cols=153  Identities=19%  Similarity=0.279  Sum_probs=149.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       109 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  187 (265)
T 3kqf_A          109 INGIALGGGTELSLACDFRIAA-ESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFV  187 (265)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCeeehHHHHHHHhCCEEEEc-CCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       188 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3kqf_A          188 VP-VHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPM  261 (265)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCC
T ss_pred             eC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999999888899999999999999999999999999999999885

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=2e-40  Score=249.83  Aligned_cols=153  Identities=19%  Similarity=0.220  Sum_probs=149.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       100 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  178 (256)
T 3trr_A          100 VEGFALAGGTELVLSCDLVVAG-RSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRL  178 (256)
T ss_dssp             ECSBCCTHHHHHHHTSSEEEEE-TTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEE
T ss_pred             ECCeeeechhHHHHhCCEEEEC-CCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       179 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  252 (256)
T 3trr_A          179 VD-DGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPV  252 (256)
T ss_dssp             EC-TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             cC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999999888899999999999999999999999999999999885

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.4e-40  Score=251.35  Aligned_cols=153  Identities=25%  Similarity=0.353  Sum_probs=149.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       105 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  183 (261)
T 3pea_A          105 IHGAALGGGLEFAMSCHMRFAT-ESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGV  183 (261)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEE
T ss_pred             ECCeeehHHHHHHHhCCEEEEc-CCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       184 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  257 (261)
T 3pea_A          184 FA-EETFLDDTLKVAKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPS  257 (261)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCC
T ss_pred             cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999885

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.8e-40  Score=250.19  Aligned_cols=153  Identities=18%  Similarity=0.146  Sum_probs=149.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       109 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  187 (265)
T 3swx_A          109 VHGKVLTLGIELALAADIVIAD-ETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEI  187 (265)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEE
T ss_pred             EcCeeehHHHHHHHHCCEEEEc-CCCEEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHHcCCCCEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       188 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3swx_A          188 VP-VGEHVDTAIAIAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAE  261 (265)
T ss_dssp             ES-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCC
T ss_pred             cC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence            99 799999999999999999999999999999999888899999999999999999999999999999999885

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=2.5e-40  Score=251.86  Aligned_cols=153  Identities=19%  Similarity=0.338  Sum_probs=149.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       122 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~v  200 (278)
T 3h81_A          122 VAGYALGGGCELAMMCDVLIAA-DTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV  200 (278)
T ss_dssp             ECBEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCeeehHHHHHHHHCCEEEEc-CCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       201 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~  274 (278)
T 3h81_A          201 VP-ADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQ  274 (278)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999885

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=3.3e-40  Score=249.79  Aligned_cols=153  Identities=17%  Similarity=0.246  Sum_probs=149.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       109 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  187 (265)
T 3rsi_A          109 VNGACLGGGCEMLQQTDIRVSD-EHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHV  187 (265)
T ss_dssp             ECSCEETHHHHHHTTCSEEEEE-TTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             ECCeeeHHHHHHHHHCCEEEec-CCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       188 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3rsi_A          188 VP-AGTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREAR  261 (265)
T ss_dssp             ES-TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCC
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999875

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.2e-40  Score=253.18  Aligned_cols=153  Identities=14%  Similarity=0.109  Sum_probs=148.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       113 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~v  191 (275)
T 3hin_A          113 LKGAVIGGGLELACAAHIRVAE-ASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYL  191 (275)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCeeehHHHHHHHhCCEEEEc-CCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       192 v~-~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~  265 (275)
T 3hin_A          192 IE-NGSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAK  265 (275)
T ss_dssp             ES-SSCHHHHHHHHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999763

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=3.4e-40  Score=248.45  Aligned_cols=153  Identities=18%  Similarity=0.272  Sum_probs=149.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus        99 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  177 (255)
T 3p5m_A           99 VHGAAVGFGCSLALACDLVVAA-PASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHI  177 (255)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEC-TTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             eCCeehhhHHHHHHHCCEEEEc-CCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       178 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  251 (255)
T 3p5m_A          178 TS-ADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPN  251 (255)
T ss_dssp             CC-TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999885

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.8e-40  Score=250.92  Aligned_cols=153  Identities=20%  Similarity=0.312  Sum_probs=149.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  185 (263)
T 3moy_A          107 VAGYALGGGCELAMLCDLVIAA-DTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRI  185 (263)
T ss_dssp             ECBEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEE
T ss_pred             ECCEeehHHHHHHHHCCEEEec-CCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       186 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~  259 (263)
T 3moy_A          186 VP-AADLLDEALAVAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPE  259 (263)
T ss_dssp             EC-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             cC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999885

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=2.4e-40  Score=250.45  Aligned_cols=153  Identities=15%  Similarity=0.159  Sum_probs=148.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       109 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  187 (265)
T 3qxi_A          109 VEGYALAGGTELALATDLIVAA-RDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVL  187 (265)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             ECCceeHHHHHHHHhCCEEEEc-CCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       188 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  261 (265)
T 3qxi_A          188 AE-PGAALDAAIALAEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPR  261 (265)
T ss_dssp             EC-TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCC
T ss_pred             eC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999885

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=2.5e-40  Score=250.42  Aligned_cols=153  Identities=18%  Similarity=0.298  Sum_probs=148.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       105 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~v  183 (265)
T 3qxz_A          105 VNGHAIGIGMTLALHADIRILA-EEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRC  183 (265)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEE-TTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEE
T ss_pred             ECCEEehHhHHHHHHCCEEEEc-CCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATI-PGAARKLTKLMLREKTISNLMEN--KEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++.+.+++++|+.. ||.+++.+|++++.....++++.  ++.|...+..++.++|.+|++.+|++||+|+
T Consensus       184 v~-~~~l~~~a~~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~  260 (265)
T 3qxz_A          184 LP-AGKVLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPR  260 (265)
T ss_dssp             EC-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCC
T ss_pred             eC-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999 99999999999999988888888  8999999999999999999999999999885

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=5.5e-40  Score=250.18  Aligned_cols=153  Identities=23%  Similarity=0.264  Sum_probs=148.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeeccccccccc-CChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGII-APFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~-~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++ |+++++++|++++|..+|++++++|++++++||+++||||+
T Consensus       120 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~  198 (279)
T 3g64_A          120 LHGVAAGAGAVLALAADFRVAD-PSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISE  198 (279)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEC-TTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSE
T ss_pred             EcCeeccccHHHHHhCCEEEEe-CCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCE
Confidence            6999999999999999999999 999999999999999 99999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       199 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  273 (279)
T 3g64_A          199 LTE-EGRADEAARTLARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPK  273 (279)
T ss_dssp             ECC-TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             ecC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence            999 899999999999999999999999999999999888899999999999999999999999999999999875

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5.1e-40  Score=249.06  Aligned_cols=152  Identities=19%  Similarity=0.275  Sum_probs=145.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++ +|++++|..+|++++++|++++++||+++||||+|
T Consensus       106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~v  183 (268)
T 3i47_A          106 VQGAAFGGGAGLAAACDIAIAS-TSARFCFSEVKLGLIPAVISP-YVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHC  183 (268)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEE
T ss_pred             ECCEEEhHhHHHHHhCCEEEEc-CCCEEECcccccCCCcccHHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEe
Confidence            6999999999999999999999 999999999999999988876 89999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLME-NKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..||.+++.+|++++.....++++ .++.|...+..++.++|.+|++.+|++||+|+
T Consensus       184 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~  258 (268)
T 3i47_A          184 VP-DDTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPN  258 (268)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCT
T ss_pred             eC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            99 8999999999999999999999999999999987777777 67888899999999999999999999999985

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.2e-39  Score=245.79  Aligned_cols=153  Identities=22%  Similarity=0.348  Sum_probs=148.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       102 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  180 (258)
T 2pbp_A          102 VNGLALGGGFELALSCDLIVAS-SAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRV  180 (258)
T ss_dssp             ECSEEETHHHHHHHTSSEEEEE-TTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             EcCEEEhHHHHHHHhCCEEEEc-CCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       181 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  254 (258)
T 2pbp_A          181 VS-PELLMEETMRLAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPR  254 (258)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCC
T ss_pred             eC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999999999874

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.1e-39  Score=245.82  Aligned_cols=153  Identities=18%  Similarity=0.281  Sum_probs=148.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  179 (257)
T 2ej5_A          101 VNGAAAGAGMSLALACDFRLLS-EKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKV  179 (257)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEE
T ss_pred             ECccccchhHHHHHhCCEEEEc-CCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       180 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  253 (257)
T 2ej5_A          180 IP-LSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPL  253 (257)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCC
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999998877889999999999999999999999999999998874

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=2e-40  Score=251.16  Aligned_cols=153  Identities=18%  Similarity=0.253  Sum_probs=148.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       108 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~v  186 (267)
T 3r9t_A          108 VNGTALGGGTELALASDLVVAD-ERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEV  186 (267)
T ss_dssp             ECSEECTHHHHHHHHSSEEEEE-TTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEE
T ss_pred             ECCEEEhHHHHHHHhCCEEEEc-CCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLM---LREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~---l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++++.+.+++++|+..+|.+++.+|++   ++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       187 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~  263 (267)
T 3r9t_A          187 VE-AGSVLDAALALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPV  263 (267)
T ss_dssp             EC-TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCC
T ss_pred             cC-hhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 89999999999999999999999999999   8887777889999999999999999999999999999999885

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=4e-40  Score=248.83  Aligned_cols=153  Identities=18%  Similarity=0.142  Sum_probs=148.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       108 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  186 (261)
T 2gtr_A          108 VNGPAIGLGASILPLCDVVWAN-EKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQV  186 (261)
T ss_dssp             ECSCEETHHHHTGGGSSEEEEE-TTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             ECCeEeeHHHHHHHhCCEEEEc-CCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCcccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       187 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  260 (261)
T 2gtr_A          187 FW-PGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDE  260 (261)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence            99 899999999999999999999999999999988777889999999999999999999999999999999875

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=8.8e-40  Score=250.23  Aligned_cols=153  Identities=14%  Similarity=0.208  Sum_probs=148.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCC-hhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAP-FWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~-~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+ ++++++|++++|..++++++++|++++++||+++||||+
T Consensus       130 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~  208 (290)
T 3sll_A          130 INGAAIGGGLCLALACDVRVAS-QDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSR  208 (290)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSE
T ss_pred             ECCeehHHHHHHHHHCCEEEEe-CCCEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccE
Confidence            6999999999999999999999 99999999999999998 899999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTI-SNLMENKEKDLKNVVDLI-TSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ ++++.+.+.+++++|+..||.+++.+|++++.... .++++.++.|...+..++ .++|.+|++.+|++||+|+
T Consensus       209 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~  285 (290)
T 3sll_A          209 KVA-SESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAE  285 (290)
T ss_dssp             EEC-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCC
T ss_pred             EeC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            999 89999999999999999999999999999999988 889999999999999999 9999999999999999885

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=5.5e-40  Score=250.06  Aligned_cols=153  Identities=20%  Similarity=0.192  Sum_probs=149.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       122 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  200 (278)
T 4f47_A          122 VEGPAIAGGTEILQGTDIRVAA-ESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHV  200 (278)
T ss_dssp             ECSEEETHHHHHHTTCSEEEEE-TTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             ECCEEehHHHHHHHhCCEEEEc-CCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       201 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~  274 (278)
T 4f47_A          201 VP-DGQALTKALEIAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPN  274 (278)
T ss_dssp             EC-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCC
T ss_pred             eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence            99 799999999999999999999999999999999888899999999999999999999999999999999875

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=8.1e-40  Score=248.69  Aligned_cols=152  Identities=16%  Similarity=0.155  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCC--CCCHHHHHHcCccc
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGK--MFTSAEALKVGLID   78 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~--~~~a~eA~~~Glv~   78 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++| ++++++|++++|..+|++++++|+  +++++||+++||||
T Consensus       117 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~  194 (274)
T 3tlf_A          117 VNGICCGAGMDWVTTTDIVIAS-EQATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLIS  194 (274)
T ss_dssp             ECSEEEGGGHHHHHHSSEEEEE-TTCEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSS
T ss_pred             ECCeeehHHHHHHHhCCEEEEc-CCCEEECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCC
Confidence            6999999999999999999999 9999999999999999 999999999999999999999999  99999999999999


Q ss_pred             eecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         79 EEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        79 ~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +|++ ++++++.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       195 ~vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  270 (274)
T 3tlf_A          195 EIVE-HDRLLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPN  270 (274)
T ss_dssp             EEEC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             eecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence            9999 899999999999999999999999999999998888899999999999999999999999999999999875

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.3e-39  Score=245.18  Aligned_cols=153  Identities=22%  Similarity=0.320  Sum_probs=148.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCce-eeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKY-TIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a-~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ +++ +|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+
T Consensus       108 v~G~a~GgG~~lalacD~ria~-~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~  186 (265)
T 2ppy_A          108 LEGHTVGGGLEMALACDLRFMG-DEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNR  186 (265)
T ss_dssp             ECSEEETHHHHHHHTSSEEEEE-TTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSE
T ss_pred             ECCEEeeHHHHHHHhCCEEEEe-CCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcce
Confidence            6999999999999999999999 999 99999999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ .+++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       187 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  261 (265)
T 2ppy_A          187 VFP-QAETRERTREYARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPN  261 (265)
T ss_dssp             EEC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            999 899999999999999999999999999999998777889999999999999999999999999999999874

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.4e-39  Score=246.25  Aligned_cols=152  Identities=19%  Similarity=0.164  Sum_probs=147.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       111 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  189 (264)
T 1wz8_A          111 VEKVAVGAGLALALAADIAVVG-KGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALA  189 (264)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEE
T ss_pred             ECCeeechhHHHHHhCCEEEec-CCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|+.++..... +++.++.|...+..++.+++.++++++|++||+|+
T Consensus       190 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  262 (264)
T 1wz8_A          190 VE-DEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPE  262 (264)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCC
Confidence            99 899999999999999999999999999999998777 88889999999999999999999999999999875

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=9.3e-40  Score=247.05  Aligned_cols=153  Identities=27%  Similarity=0.371  Sum_probs=144.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|+.+|++++++|++++++||+++||||+|
T Consensus       108 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  186 (263)
T 3lke_A          108 INGYAYGGGFNMMLACDRRIAL-RRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEI  186 (263)
T ss_dssp             ECSEEETHHHHGGGGSSEEEEE-TTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEE
T ss_pred             ECCEeeHHHHHHHHHCCEEEEc-CCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCCcEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      ++|++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.++++.+|++++++
T Consensus       187 v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~  260 (263)
T 3lke_A          187 CENKQELQERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHH  260 (263)
T ss_dssp             ESSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC------
T ss_pred             cCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCC
Confidence            99789999999999999999999999999999999988899999999999999999999999999999999876

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=4.2e-40  Score=248.76  Aligned_cols=151  Identities=17%  Similarity=0.260  Sum_probs=131.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       108 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~v  186 (262)
T 3r9q_A          108 ISGHAVAGGIELALWCDLRVVE-EDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRV  186 (262)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             ECCeeehhhhHHHHhCCEEEEe-CCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +| ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|.. +..++.+ |.+|++.+|++|++|+
T Consensus       187 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~  258 (262)
T 3r9q_A          187 VA-RGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRH  258 (262)
T ss_dssp             EC-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-----------------
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCC
Confidence            99 89999999999999999999999999999999988889999999998 8889999 9999999999999874

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=1.3e-39  Score=246.92  Aligned_cols=153  Identities=17%  Similarity=0.209  Sum_probs=147.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  185 (269)
T 1nzy_A          107 INGVAAGGGLGISLASDMAICA-DSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRV  185 (269)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCE
T ss_pred             ECCeeecHHHHHHHhCCEEEec-CCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       186 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  259 (269)
T 1nzy_A          186 YP-KDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRAD  259 (269)
T ss_dssp             EC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTT
T ss_pred             eC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Confidence            99 899999999999999999999999999999988777888999999999999999999999999999999874

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.8e-40  Score=250.53  Aligned_cols=153  Identities=17%  Similarity=0.137  Sum_probs=142.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       126 V~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~v  204 (291)
T 2fbm_A          126 VNGPAIGLGASILPLCDLVWAN-EKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV  204 (291)
T ss_dssp             ECSCEETHHHHTGGGSSEEEEE-TTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEE
T ss_pred             ECCeeecHHHHHHHhCCEEEEe-CCCEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCccee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLY-LQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..||.++..+|++++.....++++.++.|...+..++.++|.+|++.+| ++||+|+
T Consensus       205 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~  279 (291)
T 2fbm_A          205 FL-TGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAA  279 (291)
T ss_dssp             EC-STTSHHHHHHHHHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC--------
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Confidence            99 89999999999999999999999999999998877788999999999999999999999999999 9998874

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=2.2e-39  Score=246.97  Aligned_cols=152  Identities=18%  Similarity=0.179  Sum_probs=137.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       128 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~v  206 (280)
T 2f6q_A          128 VNGPAVGISVTLLGLFDAVYAS-DRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEV  206 (280)
T ss_dssp             ECSCEETHHHHGGGGCSEEEEE-TTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEE
T ss_pred             ECCeeehHHHHHHHhCCEEEEC-CCcEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      ++ ++++.+.+.+++++++..+|.+++.+|+.++.....++++.++.|...+..++.+++.++++.+|++||+|
T Consensus       207 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          207 FP-DSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             EC-TTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             EC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence            99 89999999999999999999999999999998877788899999999999999999999999999999886

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.7e-39  Score=245.28  Aligned_cols=153  Identities=18%  Similarity=0.248  Sum_probs=148.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       104 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  182 (260)
T 1mj3_A          104 VNGYALGGGCELAMMCDIIYAG-EKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI  182 (260)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCEEEeHHHHHHHhCCEEEEc-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       183 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~  256 (260)
T 1mj3_A          183 FP-VETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKAN  256 (260)
T ss_dssp             EC-TTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             eC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999988777889999999999999999999999999999998874

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=2.9e-39  Score=244.69  Aligned_cols=150  Identities=19%  Similarity=0.289  Sum_probs=139.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       106 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~v  184 (266)
T 3fdu_A          106 VKGVAIGIGVTILLQADLVFAD-NTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEI  184 (266)
T ss_dssp             ECSEEETHHHHGGGGCSEEEEC-TTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEE
T ss_pred             ECCEEehHHHHHHHhCCEEEEc-CCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCHHHH
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +|   ++.+.+.+++++|+..||.+++.+|++++... .++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       185 v~---~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~  255 (266)
T 3fdu_A          185 VE---DAYATAQATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPD  255 (266)
T ss_dssp             CS---CHHHHHHHHHHHHHTSCHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC------
T ss_pred             HH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            98   79999999999999999999999999998875 5788999999999999999999999999999999874

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=3.9e-39  Score=243.29  Aligned_cols=154  Identities=45%  Similarity=0.838  Sum_probs=141.2

Q ss_pred             CCcccchHHHHHHhhcceeeeec-CceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVG-PKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~-~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||+++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+
T Consensus       104 v~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~  183 (260)
T 1sg4_A          104 INGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQ  183 (260)
T ss_dssp             ECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSE
T ss_pred             ECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCE
Confidence            69999999999999999999995 68999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |++ ++++.+.+.+++++++..||.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||++|
T Consensus       184 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~  258 (260)
T 1sg4_A          184 VVP-EEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEE  258 (260)
T ss_dssp             EEC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC--------
T ss_pred             ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc
Confidence            999 899999999999999999999999999999998877888889999999999999999999999999998875

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=4.3e-40  Score=248.01  Aligned_cols=151  Identities=15%  Similarity=0.189  Sum_probs=109.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       106 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  184 (256)
T 3qmj_A          106 VNGLGVGIGATILGYADLAFMS-STARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRI  184 (256)
T ss_dssp             ECSEEETHHHHGGGGCSEEEEE-TTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEE
T ss_pred             ECCeehhHHHHHHHhCCEEEEe-CCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||+
T Consensus       185 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          185 CS-PEELLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHCC-------------------------------------
T ss_pred             eC-HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence            99 8999999999999999999999999999999988888999999999999999999999999999999985

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=2.8e-40  Score=253.74  Aligned_cols=153  Identities=20%  Similarity=0.272  Sum_probs=114.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       137 V~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~v  215 (298)
T 3qre_A          137 INGPCVGIGLTQALMCDVRFAA-AGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEV  215 (298)
T ss_dssp             ECSCEETHHHHHHHHSSEEEEE-TTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEE
T ss_pred             ECCceeecchHHHhhCCEEEEc-CCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATI-PGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++|+.. +|.+++.+|++++.....++++.+..|...+..++.++|.+|++++|++||+|+
T Consensus       216 v~-~~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~  290 (298)
T 3qre_A          216 VT-PEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQ  290 (298)
T ss_dssp             EC-GGGHHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGGC------------------------------------
T ss_pred             cC-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999998 999999999999998888888888888888999999999999999999999875

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.5e-39  Score=243.42  Aligned_cols=152  Identities=18%  Similarity=0.307  Sum_probs=147.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++ +++|++++|..++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~v  178 (253)
T 1uiy_A          101 VNGPAVAGGAGLALACDLVVMD-EEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI  178 (253)
T ss_dssp             ECSCEETHHHHHHHTSSEEEEE-TTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEE
T ss_pred             ECCeeeHHHHHHHHhCCEEEEc-CCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCccee
Confidence            6999999999999999999999 9999999999999999988 9999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       179 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  252 (253)
T 1uiy_A          179 AP-PGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             EC-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             cC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence            99 899999999999999999999999999999998877889999999999999999999999999999999875

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=3.1e-39  Score=245.57  Aligned_cols=153  Identities=14%  Similarity=0.196  Sum_probs=147.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCH-HHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~-~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|. .+|++++++|++++++||+++||||+
T Consensus       114 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~  192 (275)
T 1dci_A          114 IHGGCIGGGVDLISACDIRYCT-QDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSR  192 (275)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEE-TTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSE
T ss_pred             ECCeeeHHHHHHHHhCCEEEEe-CCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcce
Confidence            6999999999999999999999 999999999999999999999999999999 99999999999999999999999999


Q ss_pred             ecCCh-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh---ccCC
Q psy15240         80 EVTSE-EEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQS---LKKK  155 (155)
Q Consensus        80 v~~~~-~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~k  155 (155)
                      |++ + +++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++|   |+|+
T Consensus       193 vv~-~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~  271 (275)
T 1dci_A          193 VFP-DKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSIT  271 (275)
T ss_dssp             EES-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCC
T ss_pred             ecC-ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence            999 6 9999999999999999999999999999999887788999999999999999999999999999999   8774

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=5.3e-39  Score=245.42  Aligned_cols=152  Identities=15%  Similarity=0.286  Sum_probs=147.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++ +++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       126 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~v  203 (286)
T 3myb_A          126 VHGIATAAGCQLVAMCDLAVAT-RDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRV  203 (286)
T ss_dssp             ECSCEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCeehHHHHHHHHhCCEEEEc-CCCEEECcccccCCC-CchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence            6999999999999999999999 999999999999999 88889999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.++..+|++++.....++++.++.|...+..++.++|.++++.+|++||+|+
T Consensus       204 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~  277 (286)
T 3myb_A          204 VA-PKALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPE  277 (286)
T ss_dssp             EC-GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCC
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence            99 899999999999999999999999999999999888899999999999999999999999999999999875

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=5.1e-39  Score=244.05  Aligned_cols=152  Identities=22%  Similarity=0.201  Sum_probs=138.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       114 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~v  192 (272)
T 3qk8_A          114 IRGPAVGAGLVVALLADISVAS-ATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTC  192 (272)
T ss_dssp             ECSEEEHHHHHHHHHSSEEEEE-TTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEE
T ss_pred             ECCeeehHHHHHHHhCCEEEEc-CCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++.+.+++++|+..+|.+++.+|++++..... ....++........++.++|.+|++.+|++||+|+
T Consensus       193 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~e~~~~~s~d~~eg~~Af~ekR~p~  265 (272)
T 3qk8_A          193 VD-DDEVLPTATRLAENLAQGAQNAIRWTKRSLNHWYRM-FGPTFETSLGLEFLGFTGPDVQEGLAAHRQKRPAR  265 (272)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCC
T ss_pred             eC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999976542 22223333333357889999999999999999885

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.2e-39  Score=245.18  Aligned_cols=152  Identities=21%  Similarity=0.268  Sum_probs=146.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++++ |++++|..++++++++|++++++||+++||||+|
T Consensus       133 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~v  210 (287)
T 2vx2_A          133 VNGLATAAGCQLVASCDIAVAS-DKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKV  210 (287)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCEEEcHHHHHHHhCCEEEEc-CCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCccee
Confidence            6999999999999999999999 9999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++|+..+|.+++.+|++++.....++++.++.|...+..++.+++.++++++|++||+|+
T Consensus       211 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  284 (287)
T 2vx2_A          211 VP-EAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPV  284 (287)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999988777888999999999999999999999999999999875

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=2.1e-39  Score=244.82  Aligned_cols=153  Identities=18%  Similarity=0.201  Sum_probs=147.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       103 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  181 (261)
T 1ef8_A          103 VEGSVWGGAFEMIMSSDLIIAA-STSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHV  181 (261)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             ECCEEEeHhHHHHHhCCEEEec-CCCEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCcccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVV--DLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++++..+|.++..+|++++.....++++.++.|...+.  .++.+++.++++.+|++||+|+
T Consensus       182 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~  257 (261)
T 1ef8_A          182 VE-VEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPN  257 (261)
T ss_dssp             EC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCC
Confidence            99 89999999999999999999999999999999877778888899998888  9999999999999999999874

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=6.9e-39  Score=243.62  Aligned_cols=152  Identities=13%  Similarity=0.162  Sum_probs=140.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       116 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~v  194 (275)
T 4eml_A          116 VAGYAIGGGHVLHLVCDLTIAA-DNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTV  194 (275)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCeeehHHHHHHHhCCEEEEc-CCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCccEe
Confidence            6999999999999999999999 999999999999998888889999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++..... .....+.|.+.+..++.++|.+|++.+|++||+|+
T Consensus       195 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~  267 (275)
T 4eml_A          195 VP-VDRLEEEGIQWAKEILSKSPLAIRCLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPD  267 (275)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            99 899999999999999999999999999999987542 23334456666778899999999999999999875

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.4e-38  Score=241.06  Aligned_cols=150  Identities=15%  Similarity=0.302  Sum_probs=145.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|+ ++|..++++++++|++++++||+++||||+|
T Consensus       115 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  192 (267)
T 3oc7_A          115 IDGHVRAGGFGLVGACDIAVAG-PRSSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA  192 (267)
T ss_dssp             ECSEEETTHHHHHHHSSEEEEC-TTCEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred             EcCeecccchHHHHHCCEEEEc-CCCEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh
Confidence            6999999999999999999999 9999999999999999999999999 9999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                       +  +++++.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       193 -~--~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  264 (267)
T 3oc7_A          193 -A--EDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPN  264 (267)
T ss_dssp             -C--SSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCT
T ss_pred             -h--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence             4  78999999999999999999999999999999888999999999999999999999999999999999885

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.2e-38  Score=242.16  Aligned_cols=151  Identities=15%  Similarity=0.223  Sum_probs=143.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       114 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  192 (273)
T 2uzf_A          114 VKGYAVGGGNVLNVVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTV  192 (273)
T ss_dssp             ECEEEETHHHHHHHHSSEEEEE-TTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEE
T ss_pred             ECCEEeehhHHHHHhCCEEEEc-CCCEEECchhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDL-KNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++++|+..+|.++..+|++++.  ..++++.++.|. ..+..++.++|.++++.+|++||+|+
T Consensus       193 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~--~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~  265 (273)
T 2uzf_A          193 VP-LEKVEDETVQWCKEIMKHSPTALRFLKAAMNA--DTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPD  265 (273)
T ss_dssp             EC-GGGSHHHHHHHHHHHTTSCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCC
Confidence            99 89999999999999999999999999999993  346777888888 88889999999999999999998874

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=6.9e-39  Score=243.77  Aligned_cols=150  Identities=19%  Similarity=0.268  Sum_probs=127.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       113 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~v  191 (276)
T 2j5i_A          113 VNGWCFGGGFSPLVACDLAICA-DEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNES  191 (276)
T ss_dssp             ECSCEEGGGHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEE
T ss_pred             ECCeeehhHHHHHHhCCEEEEc-CCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--hcCH-HHHHHHHHHHhhc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDL--ITSP-QVQKGLGLYLQSL  152 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~--~~~~-~~~~~~~~~~~~~  152 (155)
                      +| ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+...  +.++ |.+|++.+|++||
T Consensus       192 v~-~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr  265 (276)
T 2j5i_A          192 VP-LAQLREVTIELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK  265 (276)
T ss_dssp             EC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence            99 8999999999999999999999999999999887777888888777666554  6688 9999999999887

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=9.5e-39  Score=240.59  Aligned_cols=153  Identities=12%  Similarity=0.172  Sum_probs=128.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus        99 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  177 (256)
T 3pe8_A           99 INGAAVTGGLELALYCDILIAS-ENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEV  177 (256)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCE
T ss_pred             ECCeeechHHHHHHhCCEEEEc-CCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVD---LITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++++..||.+++.+|++++.....++++.++.|...+..   .+.++|.++++.+|++|++|+
T Consensus       178 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~  254 (256)
T 3pe8_A          178 VA-HDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQ  254 (256)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred             eC-HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCcc
Confidence            99 899999999999999999999999999999999888899999998888554   457778899999999999874

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=8.5e-39  Score=240.19  Aligned_cols=150  Identities=19%  Similarity=0.154  Sum_probs=126.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++ +|++++|.+++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  178 (250)
T 2a7k_A          101 VDGYAIGMGFQFALMFDQRLMA-STANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV  178 (250)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEE-TTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEE
T ss_pred             ECCeEeHHHHHHHHhCCEEEEc-CCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCccee
Confidence            6999999999999999999999 999999999999999999999 99999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      ++ ++++.+.+.+++++|+..||.++..+|++++.....++++.++.|...+..++.++|.++++.+|++||+
T Consensus       179 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          179 VE-SSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             EC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             cC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence            99 8999999999999999999999999999999988888899999999999999999999999999999874

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=6.3e-39  Score=245.10  Aligned_cols=148  Identities=18%  Similarity=0.213  Sum_probs=141.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecC-ceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGP-KYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~-~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ + +++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+
T Consensus       113 V~G~a~GgG~~lalacD~ria~-~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~  191 (287)
T 3gkb_A          113 LAGKARGGGAEFVAAADMAFAA-AETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINR  191 (287)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSE
T ss_pred             ECCeeehHHHHHHHHCCEEEEe-CCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcE
Confidence            6999999999999999999999 8 9999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      |+| ++++.+.+.+++++|+..||.+++.+|++++..   ...+.++.|...+..++.++|.+|++.+|++|++
T Consensus       192 vv~-~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~  261 (287)
T 3gkb_A          192 ALP-ADELDEYVDRVARNIAALPDGVIEAAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA  261 (287)
T ss_dssp             EEC-HHHHHHHHHHHHHHHHTSCTTHHHHHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred             EeC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence            999 899999999999999999999999999999874   2347788899999999999999999999999987

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=2.8e-38  Score=241.74  Aligned_cols=147  Identities=18%  Similarity=0.265  Sum_probs=143.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++ ++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+
T Consensus       110 V~G~a~GgG~~LalacD~ria~-~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~  188 (289)
T 3h0u_A          110 LRGRARGAGSEFLLACDMRFAS-RENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNR  188 (289)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSE
T ss_pred             ECCEeehhhHHHHHhCCEEEEe-CCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccE
Confidence            6999999999999999999999 98 999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQ  150 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  150 (155)
                      |+| ++++.+.+.+++++|+..||.++..+|++++.... ++++.++.|...+..++.++|.+|++++|++
T Consensus       189 vv~-~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          189 AVP-DAELDEFVAGIAARMSGFPRDALIAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             EEC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             ecC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            999 89999999999999999999999999999999877 7899999999999999999999999999999

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=2.4e-38  Score=240.71  Aligned_cols=148  Identities=13%  Similarity=0.141  Sum_probs=143.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       129 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~v  207 (276)
T 3rrv_A          129 VNGPAVGLGCSLVALSDIVYIA-ENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHV  207 (276)
T ss_dssp             ECSCEETHHHHHHHTSSEEEEE-TTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECceeeHHHHHHHHHCCEEEEe-CCCEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHH
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSL  152 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  152 (155)
                      +   +++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++.+|++||
T Consensus       208 v---~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          208 A---DDPVAEAIACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             E---SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             H---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            9   67999999999999999999999999999998888899999999999999999999999999999986

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=2e-38  Score=242.52  Aligned_cols=152  Identities=16%  Similarity=0.198  Sum_probs=139.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       130 V~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v  208 (289)
T 3t89_A          130 VAGYSIGGGHVLHMMCDLTIAA-DNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV  208 (289)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEE
T ss_pred             ECCEeehHHHHHHHhCCEEEEe-CCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEe
Confidence            6999999999999999999999 999999999999988888889999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|+..+|.+++.+|++++..... .....+.|.+.+..++.++|.+|++.+|++||+|+
T Consensus       209 v~-~~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~  281 (289)
T 3t89_A          209 VP-LADLEKETVRWCREMLQNSPMALRCLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPD  281 (289)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCC
T ss_pred             eC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence            99 899999999999999999999999999999987542 33334456666778899999999999999999875

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=3.6e-38  Score=239.35  Aligned_cols=153  Identities=20%  Similarity=0.298  Sum_probs=144.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       112 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  190 (272)
T 1hzd_A          112 IDGLALGGGLELALACDIRVAA-SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHV  190 (272)
T ss_dssp             ESEEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEE
T ss_pred             eCceEEecHHHHHHhCCEEEEc-CCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCccee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhH----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEE----AITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~----~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ +++    +.+.+.+++++++..+|.+++.+|++++.....++++.++.|...+..++.+++.++++.+|++||+|+
T Consensus       191 v~-~~~l~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~  268 (272)
T 1hzd_A          191 LE-QNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPR  268 (272)
T ss_dssp             EC-CCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCC
T ss_pred             cC-hhhhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence            99 565    456788999999999999999999999998777888999999999999999999999999999999874

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=9e-38  Score=236.54  Aligned_cols=149  Identities=17%  Similarity=0.219  Sum_probs=135.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++ +++|++++|..+|++++++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~v  184 (267)
T 3hp0_A          107 VRGKVNAGGLGFVSATDIAIAD-QTASFSLSELLFGLYPACV-LPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAF  184 (267)
T ss_dssp             ECSEEETTHHHHHHHSSEEEEC-TTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCB
T ss_pred             ECCEEeehHHHHHHhCCEEEEc-CCCEEECchhccCcCchhH-HHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccee
Confidence            6999999999999999999999 9999999999999998775 7789999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      +++.++   .+.+++++|+..||.+++.+|++++.... ..++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       185 v~~~~~---~~~~~a~~la~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~  255 (267)
T 3hp0_A          185 DAESDV---LLRKHLLRLRRLNKKGIAHYKQFMSSLDH-QVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFP  255 (267)
T ss_dssp             CSCTTH---HHHHHHHHHTTSCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC-
T ss_pred             cCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Confidence            994333   46789999999999999999999998643 456777788888999999999999999999999985

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-38  Score=240.65  Aligned_cols=147  Identities=17%  Similarity=0.134  Sum_probs=113.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       112 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~v  190 (258)
T 3lao_A          112 VQGTCWTAGIELMLNADIAVAA-RGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEV  190 (258)
T ss_dssp             ECSEEETHHHHHHHTSSEEEEE-TTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEE
T ss_pred             ECCEeEhHHHHHHHhCCEEEEc-CCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL  149 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  149 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++++|+
T Consensus       191 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          191 VE-PGEELARALEYAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             EC-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC-------------------------------
T ss_pred             eC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence            99 899999999999999999999999999999998888899999999999999999999999999985

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=1.5e-38  Score=247.27  Aligned_cols=153  Identities=12%  Similarity=0.174  Sum_probs=113.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||+++++++|++||+++|++|+++++++|++++|..+|++++++|++++|+||+++||||+|
T Consensus       174 V~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~v  253 (334)
T 3t8b_A          174 VNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAV  253 (334)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEE
T ss_pred             ECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEe
Confidence            79999999999999999999997799999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |+ ++++++.+.+++++|+..+|.+++.+|++++.... .+......|.+.+..++.++|.+|++.+|++||+|+
T Consensus       254 v~-~~~l~~~a~~~A~~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~  326 (334)
T 3t8b_A          254 AE-HAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPD  326 (334)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCC-CC----------------------------------
T ss_pred             cC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence            99 89999999999999999999999999999998753 344445556667778889999999999999999874

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=2.3e-37  Score=242.36  Aligned_cols=152  Identities=18%  Similarity=0.207  Sum_probs=140.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++| +++++++++|++++++||+++||||+|
T Consensus       112 v~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~v  189 (353)
T 4hdt_A          112 MDGIVMGGGVGVGAHGNVRVVT-DTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHY  189 (353)
T ss_dssp             ECBEEETHHHHHHTTSSEEEEC-TTCEEECCGGGGTCCCCTTHHHHHHTSST-THHHHHHHHCCCBCHHHHHHHTSCSEE
T ss_pred             eECceeecCccccCCcCeeccc-hhccccCcccccccCCCccceehhhhhhh-HHHHHHHhcCCCCCHHHHHHcCCCcEE
Confidence            6999999999999999999999 99999999999999999999999999888 689999999999999999999999999


Q ss_pred             cCChhHHHHHHHHH-------------------------------------------------------HHHHhcCChHH
Q psy15240         81 VTSEEEAITRAETF-------------------------------------------------------LAQYATIPGAA  105 (155)
Q Consensus        81 ~~~~~~~~~~~~~~-------------------------------------------------------a~~l~~~~~~a  105 (155)
                      || ++++++.+.++                                                       ++.|++++|.+
T Consensus       190 v~-~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~a~~~a~~la~~sP~a  268 (353)
T 4hdt_A          190 VP-HDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALRAHDAPAAGEAADLIATRSPIA  268 (353)
T ss_dssp             CC-GGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHHHHCSHHHHHHHHHHTTSCHHH
T ss_pred             eC-HHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCcHH
Confidence            99 89998888765                                                       45588999999


Q ss_pred             HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--hhccCC
Q psy15240        106 RKLTKLMLREKTIS-NLMENKEKDLKNVVDLITSPQVQKGLGLYL--QSLKKK  155 (155)
Q Consensus       106 ~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~k  155 (155)
                      +..+|+.+++.... ++++.++.|...+..++.++|++||+++|+  +||+|+
T Consensus       269 ~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~  321 (353)
T 4hdt_A          269 LSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPK  321 (353)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCC
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCC
Confidence            99999999998764 799999999999999999999999999999  888875

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=2.1e-37  Score=231.77  Aligned_cols=147  Identities=16%  Similarity=0.194  Sum_probs=141.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus        97 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~v  175 (243)
T 2q35_A           97 MQGHSFGGGLLLGLYADFVVFS-QESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPV  175 (243)
T ss_dssp             ECSEEETHHHHHHHTSSEEEEE-SSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCE
T ss_pred             EcCccccchHHHHHhCCEEEEe-CCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL  149 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  149 (155)
                      ++ ++++.+.+.+++++++..+|.+++.+|+.++.....++++.++.|...+...+.++|.+|++.+|+
T Consensus       176 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          176 VS-RQDVLNYAQQLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             EC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             cC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence            99 899999999999999999999999999999998887888999999999999999999999998763

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1.8e-37  Score=234.54  Aligned_cols=149  Identities=17%  Similarity=0.122  Sum_probs=130.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++ +++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       111 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~v  188 (263)
T 3l3s_A          111 VEGIATAAGLQLMAACDLAYAS-PAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRI  188 (263)
T ss_dssp             ESSEEETHHHHHHHHSSEEEEC-TTCEEECCTTTTTSC-CHHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEE
T ss_pred             ECCEEEHHHHHHHHHCCEEEec-CCCEEeCchhccCCC-CccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEE
Confidence            6999999999999999999999 999999999999999 67889999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSL  152 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  152 (155)
                      +| ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++|.+|++++|.+..
T Consensus       189 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~~  259 (263)
T 3l3s_A          189 LP-EAALATHVADLAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGHH  259 (263)
T ss_dssp             CC-HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC---------------
T ss_pred             eC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhccC
Confidence            99 999999999999999999999999999999999888899999999999999999999999999998653

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.3e-37  Score=235.14  Aligned_cols=147  Identities=22%  Similarity=0.289  Sum_probs=137.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       114 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v  192 (264)
T 3he2_A          114 INGPAIGAGLQLAMQCDLRVVA-PDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRI  192 (264)
T ss_dssp             ECSCEETHHHHHHHHSSEEEEC-TTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCcEEcchhHHHHhCCEEEEc-CCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .    +.+.+++++|+..||.+++.+|++++...  ++++.++.|...+..++.++|.+|++.+|++||+|+
T Consensus       193 ~~-~----~~a~~~A~~la~~~p~a~~~~K~~l~~~~--~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~  260 (264)
T 3he2_A          193 GT-L----ADAQAWAAEIARLAPLAIQHAKRVLNDDG--AIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPK  260 (264)
T ss_dssp             CC-H----HHHHHHHHHHHTSCHHHHHHHHHHHHTSS--CSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             ec-H----HHHHHHHHHHHcCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence            87 3    46789999999999999999999999862  456667788888999999999999999999999985

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=8.2e-37  Score=229.87  Aligned_cols=143  Identities=18%  Similarity=0.314  Sum_probs=130.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|   ++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       105 v~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v  180 (254)
T 3isa_A          105 AHGRNFGAGVDLFAACKWRYCT-PEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDC  180 (254)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEC-TTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEE
T ss_pred             ECCeEeecchhHHHhCCEEEEc-CCCEEECchhccCccH---HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEE
Confidence            6999999999999999999999 9999999999999996   47899999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++.+.+++++++..|+.+++.+|++++..       .++.|...+...+.+++.++++.+|++||+|.
T Consensus       181 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~-------~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~  247 (254)
T 3isa_A          181 AA-QAQWPALIDAAAEAATALDPATRATLHRVLRDD-------HDDADLAALARSAAQPGFKARIRDYLAQPAAE  247 (254)
T ss_dssp             CC-GGGHHHHHHHHHHHHTTSCHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHSTTHHHHHHHHHHC----
T ss_pred             eC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-------hHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Confidence            99 899999999999999999999999999998432       34556778888999999999999999999874

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=237.89  Aligned_cols=152  Identities=16%  Similarity=0.184  Sum_probs=141.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++|. ++++++++|++|+++||+++||||+|
T Consensus       109 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~~v  186 (363)
T 3bpt_A          109 IHGITMGGGVGLSVHGQFRVAT-EKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHF  186 (363)
T ss_dssp             ECSEEETHHHHTTTTSSEEEEC-TTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCSEE
T ss_pred             ECCEEehHHHHHHHhCCEEEEc-CCeEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCccee
Confidence            6999999999999999999999 999999999999999999999999999997 99999999999999999999999999


Q ss_pred             cCChhHHHHHH---------------------------------------------------H---------------HH
Q psy15240         81 VTSEEEAITRA---------------------------------------------------E---------------TF   94 (155)
Q Consensus        81 ~~~~~~~~~~~---------------------------------------------------~---------------~~   94 (155)
                      ++ .+++.+.+                                                   .               ++
T Consensus       187 v~-~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~~~~~ei~~al~~~~~~~a~~~  265 (363)
T 3bpt_A          187 VD-SEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQ  265 (363)
T ss_dssp             CC-GGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTSSSHHHHHHHHHHHCCHHHHHH
T ss_pred             cC-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCCCCHHHHHHHHhccChHHHHHH
Confidence            99 77776432                                                   2               57


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hh-ccCC
Q psy15240         95 LAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL-QS-LKKK  155 (155)
Q Consensus        95 a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~-~~~k  155 (155)
                      +++|++.+|.++..+|++++.....++++.++.|...+..++.++|++|++++|+ +| |+|+
T Consensus       266 a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK~r~P~  328 (363)
T 3bpt_A          266 LKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPK  328 (363)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeCCCCCCC
Confidence            8899999999999999999998877899999999999999999999999999999 67 7664

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=2.1e-36  Score=230.00  Aligned_cols=137  Identities=23%  Similarity=0.359  Sum_probs=133.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       122 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v  200 (277)
T 4di1_A          122 VTGYALGAGLTLALAADWRVSG-DNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDM  200 (277)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCeEehhHHHHHHhCCEEEEc-CCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSP  139 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~  139 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.++.|...+..++.++
T Consensus       201 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~  258 (277)
T 4di1_A          201 VA-PDDVYDSAVAWARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVELFAAG  258 (277)
T ss_dssp             EC-GGGHHHHHHHHHHTTTTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG
T ss_pred             eC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc
Confidence            99 89999999999999999999999999999999888889999999999999999887

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1e-35  Score=226.78  Aligned_cols=153  Identities=12%  Similarity=0.106  Sum_probs=130.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||+++++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       119 v~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~v  198 (280)
T 1pjh_A          119 LNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKN  198 (280)
T ss_dssp             ECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEE
T ss_pred             ECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCccee
Confidence            69999999999999999999987889999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCh----hHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240         81 VTSE----EEAITRAE-TFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus        81 ~~~~----~~~~~~~~-~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      +++.    +++.+.+. +++++|+..||.+++.+|++++......++.....+.......|.+.+..+++.+|.+|++
T Consensus       199 v~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~d~~e~~~af~~kr~~e~~~~f~~~~~  276 (280)
T 1pjh_A          199 FNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRFRQLGSKQR  276 (280)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHHTC------
T ss_pred             eCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHhCCccHHHHHHHHhccc
Confidence            9943    48888884 9999999999999999999999876666665556666666666666666667777777654

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=5e-36  Score=238.38  Aligned_cols=152  Identities=15%  Similarity=0.141  Sum_probs=141.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++| .++++|+++|++|+++||+++||||+|
T Consensus       149 VnG~a~GgG~~LalacD~ria~-~~a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~v  226 (407)
T 3ju1_A          149 GDGIVMGGGLGLMAGASHKVVT-ETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHY  226 (407)
T ss_dssp             CCSEEETHHHHHHHHCSEEEEC-TTCEEECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEE
T ss_pred             ECCccccCcchHHhcCCEEEEc-CCCEEeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEE
Confidence            7999999999999999999999 99999999999999999999999999999 999999999999999999999999999


Q ss_pred             cCChhHHHH---H----------------HHH------------------------------------------------
Q psy15240         81 VTSEEEAIT---R----------------AET------------------------------------------------   93 (155)
Q Consensus        81 ~~~~~~~~~---~----------------~~~------------------------------------------------   93 (155)
                      +| .+++.+   +                +.+                                                
T Consensus       227 v~-~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~~f~~sv~~i~~~L~~~~~~~~  305 (407)
T 3ju1_A          227 LN-RDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLMAGSLTDIVTRMSTLSTDEA  305 (407)
T ss_dssp             CC-GGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHHHTCSCHHHHHHHHHHCCCSCH
T ss_pred             cC-HHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcccccH
Confidence            99 788776   3                322                                                


Q ss_pred             H----HHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hh-ccCC
Q psy15240         94 F----LAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYL-QS-LKKK  155 (155)
Q Consensus        94 ~----a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~-~~~k  155 (155)
                      |    +++|+..+|.++..+|++++.....++++.++.|...+..++.++|++|++++|+ +| |+|+
T Consensus       306 ~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvrAflidKdr~P~  373 (407)
T 3ju1_A          306 WLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPK  373 (407)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCcCCC
Confidence            2    4788999999999999999999888999999999999999999999999999998 76 7764

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1.5e-35  Score=228.23  Aligned_cols=147  Identities=16%  Similarity=0.206  Sum_probs=138.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++|+++||+++||||+|
T Consensus       147 V~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~v  225 (305)
T 3m6n_A          147 VQGNALGGGFEAALSCHTIIAE-EGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRV  225 (305)
T ss_dssp             ECSCEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEE
T ss_pred             ECCEeehHHHHHHHhCCEEEEc-CCCEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHh
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGL-GLYLQ  150 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~  150 (155)
                      ++ ++++++.+.+++++|+. +|.++..+|+.++.....++++.++.|...+..++.++|....+ ..++.
T Consensus       226 v~-~~~l~~~a~~~a~~la~-~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~  294 (305)
T 3m6n_A          226 VP-RGQGVAAVEQVIRESKR-TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVR  294 (305)
T ss_dssp             EC-TTCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cC-hhHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            99 89999999999999986 88999999999999988899999999999999999998865554 44443

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=7.1e-35  Score=216.66  Aligned_cols=129  Identities=29%  Similarity=0.381  Sum_probs=123.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++||+||++ ++ ++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+
T Consensus       101 v~G~a~GgG~~lalacD~ria~-~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~  179 (232)
T 3ot6_A          101 CPGHAVAKGAFLLLSADYRIGV-AGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDK  179 (232)
T ss_dssp             CCEEEETHHHHHHTTSSEEEEE-CSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSE
T ss_pred             ECCEeehHHHHHHHHCCEEEEe-CCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCE
Confidence            7999999999999999999999 87 899999999999988888999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKN  131 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~  131 (155)
                      |+| ++++.+.+.+++++++..||.+++.+|++++.....++++.++.|.+.
T Consensus       180 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~  230 (232)
T 3ot6_A          180 VVS-VEELQGAALAVAAQLKKINMNAHKKTKLKVRKGLLDTLDAAIEQDRQH  230 (232)
T ss_dssp             EEC-TTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHh
Confidence            999 899999999999999999999999999999999888899998887764

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=7.9e-35  Score=216.53  Aligned_cols=130  Identities=25%  Similarity=0.334  Sum_probs=124.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus       102 v~G~a~GgG~~lalacD~~ia~-~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~v  180 (233)
T 3r6h_A          102 CTGHAIAMGAFLLCSGDHRVAA-HAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI  180 (233)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEC-TTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEE
T ss_pred             ECCcchHHHHHHHHhCCEEEEe-CCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNV  132 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~  132 (155)
                      +| ++++.+.+.+++++++..||.+++.+|++++.....++++.++.|...+
T Consensus       181 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          181 SL-PEVVLSRAEEAAREFAGLNQQAHNATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             CC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             eC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            99 8999999999999999999999999999999998888998888876654

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=2.8e-34  Score=216.95  Aligned_cols=138  Identities=13%  Similarity=0.109  Sum_probs=129.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeec-ccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGL-NETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~-~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+ ||++|+++||+||++ ++++|++ ||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+
T Consensus       124 v~G~a~-GG~~LalacD~ria~-~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~  201 (263)
T 2j5g_A          124 VNGAAL-LHSEYILTTDIILAS-ENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHE  201 (263)
T ss_dssp             ECSEEC-SCGGGGGGCSEEEEE-TTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSE
T ss_pred             ECCcch-HHHHHHHhCCEEEEc-CCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccE
Confidence            699999 599999999999999 9999999 9999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSL  152 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  152 (155)
                      |++ ++++.+.+.+++++|+..||.+++.+|++++.....++++.+..|           ...|+|.+|++||
T Consensus       202 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~  262 (263)
T 2j5g_A          202 VLP-QSKLMERAWEIARTLAKQPTLNLRYTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRN  262 (263)
T ss_dssp             EEC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC
T ss_pred             ecC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhcc
Confidence            999 899999999999999999999999999999998777776666554           3459999999986

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=2.3e-34  Score=229.62  Aligned_cols=147  Identities=20%  Similarity=0.152  Sum_probs=128.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++ +++|++++|..++++|+++|++|+++||+++||||+|
T Consensus       291 VnG~A~GGG~eLALaCDirIAa-e~A~Fglpev~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~V  368 (440)
T 2np9_A          291 VDGFAIGGGAQLLLVFDRVLAS-SDAYFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEV  368 (440)
T ss_dssp             ECSEEETHHHHHGGGCSEEEEE-TTCEEECCCTTTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEE
T ss_pred             ECCcccccchHHHhhCCEEEEc-CCCEEECchhccCcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence            7999999999999999999999 9999999999999998776 6899999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS--NLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      |+ ++++++.+.+++++++   +.++..+|++++.....  ...+.+..|...+..++.++|.+|++.+|++||+
T Consensus       369 vp-~~eL~~~a~~~A~~la---~~Av~~~K~~l~~~~~~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~  439 (440)
T 2np9_A          369 VE-PDELDAAIERSLTRLD---GDAVLANRRMLNLADESPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP  439 (440)
T ss_dssp             EC-HHHHHHHHHHHHHTTC---SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred             cC-hHHHHHHHHHHHHHhC---HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence            99 8999999999988774   47899999999887541  2334555566677888999999999999999986

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-33  Score=236.81  Aligned_cols=153  Identities=20%  Similarity=0.290  Sum_probs=142.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|++|++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       109 v~G~a~GgG~elalacD~ria~-~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~v  187 (725)
T 2wtb_A          109 IDGLALGGGLELAMACHARISA-PAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAV  187 (725)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEC-TTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCccCcccHHHHHhCCEEEEc-CCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcC--ChH-HH---------------------------------HHHHHHHHHHHHHhHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATI--PGA-AR---------------------------------KLTKLMLREKTISNLMEN  124 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~--~~~-a~---------------------------------~~~K~~l~~~~~~~~~~~  124 (155)
                      ++ .+++.+.+.+++++++..  |+. ++                                 ..+|++++.....++++.
T Consensus       188 v~-~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~g~pA~~~~k~~~~~~~~~~~~~~  266 (725)
T 2wtb_A          188 VP-PAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAG  266 (725)
T ss_dssp             CC-TTTHHHHHHHHHHHHHTTSSCCCCGGGCCTTSCCHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCHHHH
T ss_pred             cC-hhHHHHHHHHHHHHHHhcCCChhhhhhhccccCccchHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHhccCCHHHH
Confidence            99 899999999999999876  432 22                                 478999998887889999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240        125 KEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus       125 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++.|.+.+..++.+++.++++.+|++||++|
T Consensus       267 l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~  297 (725)
T 2wtb_A          267 LEKEAEVASQVVKLDTTKGLIHVFFSQRGTA  297 (725)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999987653

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=9.2e-33  Score=208.06  Aligned_cols=138  Identities=17%  Similarity=0.192  Sum_probs=125.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeec-ccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGL-NETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~-~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+| |++|+++||+||++ ++++|++ ||+++|++|+++++++|++++|..++++++++|++++++||+++||||+
T Consensus       115 v~G~a~G-G~~LalacD~ria~-~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~  192 (257)
T 1szo_A          115 VNGPVTN-APEIPVMSDIVLAA-ESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNE  192 (257)
T ss_dssp             ECSCBCS-STHHHHTSSEEEEE-TTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSE
T ss_pred             ECCchHH-HHHHHHHCCEEEEe-CCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceE
Confidence            6999994 99999999999999 9999999 9999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSL  152 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  152 (155)
                      |++ ++++.+.+.+++++++..||.+++.+|++++.....++++.++.+...           +++.+|-.+.
T Consensus       193 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~~~~~-----------eg~~a~~~~~  253 (257)
T 1szo_A          193 VLS-EQELLPRAWELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGLAH-----------EALAAIDLGM  253 (257)
T ss_dssp             EEC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHHHHH-----------HHHHHHHHC-
T ss_pred             EeC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHHHH-----------hhhhhhhccc
Confidence            999 899999999999999999999999999999998877777777665432           5666665554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=5e-33  Score=234.48  Aligned_cols=152  Identities=21%  Similarity=0.249  Sum_probs=139.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++||||+|
T Consensus       110 v~G~a~GgG~elalacD~ria~-~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~v  188 (715)
T 1wdk_A          110 INGIALGGGLEMCLAADFRVMA-DSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAV  188 (715)
T ss_dssp             ECSCEETHHHHHHHTSSEEEEE-TTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEE
T ss_pred             ECCEeeHHHHHHHHHCCEEEEe-CCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcC--C----------hH---------HH------------------HHHHHHHHHHHHHhH
Q psy15240         81 VTSEEEAITRAETFLAQYATI--P----------GA---------AR------------------KLTKLMLREKTISNL  121 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~--~----------~~---------a~------------------~~~K~~l~~~~~~~~  121 (155)
                      ++ ++++.+.+.+++++++..  |          |.         ++                  ..+|++++.....++
T Consensus       189 v~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~g~~~A~~~~k~~v~~~~~~~~  267 (715)
T 1wdk_A          189 VT-ADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGR  267 (715)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             eC-hHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhcCCH
Confidence            99 899999999999999876  4          21         24                  345667777766678


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC
Q psy15240        122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLKK  154 (155)
Q Consensus       122 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (155)
                      ++.++.|.+.+..++.+++.++++.+|+++|++
T Consensus       268 ~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~  300 (715)
T 1wdk_A          268 DKALEVEAAGFAKLAKTSASNCLIGLFLNDQEL  300 (715)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhh
Confidence            999999999999999999999999999998764

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=6.4e-33  Score=215.79  Aligned_cols=149  Identities=16%  Similarity=0.211  Sum_probs=123.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++   +|++++|..+|++|+++|++|+++||+++||||+|
T Consensus       164 V~G~a~GgG~~LalacD~rias-~~a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~v  239 (333)
T 3njd_A          164 IHGYCVAGGTDIALHADQVIAA-ADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEA  239 (333)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEC-TTCEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBC
T ss_pred             ECCEEeHHHHHHHHhCCEEEEC-CCCeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEe
Confidence            6999999999999999999999 9999999999999998765   58999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hHHHH--HHHHHHH------HHHHhcCHHHHHHHHHHHhh
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS-NLMEN--KEKDLKN------VVDLITSPQVQKGLGLYLQS  151 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~--~~~e~~~------~~~~~~~~~~~~~~~~~~~~  151 (155)
                      ++ .+++++++.+++++|+..|+.+++.+|++++..... .+...  +......      -...+......+++++|++|
T Consensus       240 v~-~~~l~~~a~~lA~~ia~~~~~al~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~g~~a~~ek  318 (333)
T 3njd_A          240 PD-PADLDARTERLVERIAAMPVNQLIMAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVATAREHGFREAVRR  318 (333)
T ss_dssp             CC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChHHHHHHHHhhhHHHHHHHHh
Confidence            99 899999999999999999999999999999988653 23222  1111110      01122222346778888888


Q ss_pred             ccC
Q psy15240        152 LKK  154 (155)
Q Consensus       152 ~~~  154 (155)
                      |++
T Consensus       319 R~~  321 (333)
T 3njd_A          319 RDE  321 (333)
T ss_dssp             HHG
T ss_pred             cCC
Confidence            765

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.3e-32  Score=232.04  Aligned_cols=150  Identities=23%  Similarity=0.303  Sum_probs=140.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|++|++++||+++|..+|++|+++|++++++||+++||||+|
T Consensus       113 i~G~a~GGG~elalacD~ria~-~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~v  191 (742)
T 3zwc_A          113 IQGVALGGGLELALGCHYRIAN-AKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAV  191 (742)
T ss_dssp             ECSEEETHHHHHHHTSSEEEEE-TTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECccchHHHHHHHHhcCEEEEc-CCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEe
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCCh----------------------------------HHHHHHHHHHHHHHHHhHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPG----------------------------------AARKLTKLMLREKTISNLMENKE  126 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~----------------------------------~a~~~~K~~l~~~~~~~~~~~~~  126 (155)
                      ++ .+. .+.+.++|++++..++                                  .+...+++.++.....++++.+.
T Consensus       192 v~-~d~-~~~A~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~~~~v~~~~~~~~~~gl~  269 (742)
T 3zwc_A          192 VK-SDP-VEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIK  269 (742)
T ss_dssp             ES-SCH-HHHHHHHHHHHTTSCSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             cC-chh-hHHHHHHHHHHhcCCchhhhhhcccccccchhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhCCHHHHHH
Confidence            99 555 5678899999998764                                  36777888999988889999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240        127 KDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus       127 ~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      .|.+.+.+++.+++.++.+.+|+.+++
T Consensus       270 ~E~~~F~~l~~s~~~k~~~~aFf~~r~  296 (742)
T 3zwc_A          270 EEEKLFMYLRASGQAKALQYAFFAEKS  296 (742)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999997754

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=99.97  E-value=1.7e-31  Score=203.31  Aligned_cols=129  Identities=16%  Similarity=0.222  Sum_probs=114.8

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++ +.++.. +++++|..++++++++|++++++||+++||||+|
T Consensus       124 v~G~a~GgG~~LalacD~ria~-~~a~f~~pe~~~Gl~-~~~~~~-~~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~v  200 (279)
T 3t3w_A          124 VQGRCISGGLLLCWPCDLIIAA-EDALFSDPVVLMDIG-GVEYHG-HTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRV  200 (279)
T ss_dssp             ECSEEEGGGHHHHTTSSEEEEE-TTCEEECCGGGGTCS-SCSSCC-HHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             ECCeEhHHHHHHHHhCCEEEec-CCCEEeCcHHhcCCC-CchHHH-HHhhcCHHHHHHHHHcCCccCHHHHHHCCCCcEe
Confidence            6999999999999999999999 999999999999995 444333 3999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS-NLMENKEKDLKNVV  133 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~  133 (155)
                      ++ ++++.+.+.+++++|+..||.+++.+|++++..... .+++.++.+.....
T Consensus       201 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~  253 (279)
T 3t3w_A          201 VP-RDRLDAETRALAGEIAKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDIHQ  253 (279)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             eC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcccHHHHHHHHhhHHH
Confidence            99 899999999999999999999999999999988653 56666665544433

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=99.94  E-value=1.8e-27  Score=192.53  Aligned_cols=111  Identities=14%  Similarity=0.190  Sum_probs=105.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc--eeeeccccc-ccccCChhHHHHHH--HhhCHHHHHHHHhcCCCCCHHHHHHcC
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK--YTIGLNETK-MGIIAPFWFVDTMV--HTLGPRQTELALTSGKMFTSAEALKVG   75 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~--a~~~~~e~~-~Gl~~~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~eA~~~G   75 (155)
                      |||+|+|||++|+++||+||++ ++  ++|++||++ +|++|+++++++|+  +++|..+|++++++|++++++||+++|
T Consensus       136 VnG~AlGGGleLALACD~rIAs-e~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lG  214 (556)
T 2w3p_A          136 VNGACAGGGYELALACDEIYLV-DDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWR  214 (556)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-CSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTT
T ss_pred             ECCeechhhHHHHHhCCEEEEc-CCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCC
Confidence            6999999999999999999999 88  999999999 99999999999999  999999999999999999999999999


Q ss_pred             ccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy15240         76 LIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLR  114 (155)
Q Consensus        76 lv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~  114 (155)
                      |||+|++ ++++.+.+.+++++++..+|.++.. |.+++
T Consensus       215 LVdeVVp-~~eL~~~A~~lA~~LA~~~p~Av~~-K~l~~  251 (556)
T 2w3p_A          215 LVDEVVK-PNQFDQAIQARALELAAQSDRPAHA-QGVPL  251 (556)
T ss_dssp             SCSEEEC-HHHHHHHHHHHHHHHHTTCCCCTTC-CCCCC
T ss_pred             CceEEeC-hhHHHHHHHHHHHHHHcCChHHHhh-hhhhc
Confidence            9999999 8999999999999999999988764 65543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.53  E-value=1.7e-14  Score=106.47  Aligned_cols=88  Identities=23%  Similarity=0.293  Sum_probs=73.3

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhH---------------HHHHHHhhCH--HHHHHHHhcCC
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLGP--RQTELALTSGK   64 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g~--~~a~~l~l~g~   64 (155)
                      +|.|.|+|+.|+++||++++. ++++|+.++...+. |..|.               ...+++..|.  ..+.+++..+.
T Consensus        78 ~G~AasaG~~ia~a~d~~~a~-p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~  155 (230)
T 3viv_A           78 GASAASAGTYIALGSHLIAMA-PGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDL  155 (230)
T ss_dssp             TCEEETHHHHHHHTSSEEEEC-TTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCC
T ss_pred             CCEEhHHHHHHHHhcCceeEC-CCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCC
Confidence            899999999999999999999 99999999987532 22222               1247778885  78999999999


Q ss_pred             CCCHHHHHHcCccceecCChhHHHHHH
Q psy15240         65 MFTSAEALKVGLIDEEVTSEEEAITRA   91 (155)
Q Consensus        65 ~~~a~eA~~~Glv~~v~~~~~~~~~~~   91 (155)
                      .+|++||+++||||+|++|.+++.+.+
T Consensus       156 ~ltA~EAle~GliD~V~~~~~~ll~~~  182 (230)
T 3viv_A          156 SLTPEEALKYGVIEVVARDINELLKKS  182 (230)
T ss_dssp             EECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred             eecHHHHHHcCCceEecCCHHHHHHHh
Confidence            999999999999999999666666544

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.50  E-value=3.4e-15  Score=123.76  Aligned_cols=94  Identities=17%  Similarity=0.262  Sum_probs=80.0

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccc------------cccccCCh-------------hHH-----------
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNET------------KMGIIAPF-------------WFV-----------   44 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~------------~~Gl~~~~-------------~~~-----------   44 (155)
                      |+|.|.|||+.|+++||+||++ +++.|+.+++            ++|+.|..             +.+           
T Consensus       378 v~g~AasgG~~iA~aaD~iva~-p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l  456 (593)
T 3bf0_A          378 MGGMAASGGYWISTPANYIVAN-PSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSI  456 (593)
T ss_dssp             EEEEEETHHHHTTTTCSEEEEC-TTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHhCCEEEEC-CCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999999 9999999875            58886432             111           


Q ss_pred             ----HHHHHhhCHHH-----HHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHHHH
Q psy15240         45 ----DTMVHTLGPRQ-----TELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLA   96 (155)
Q Consensus        45 ----~~l~~~~g~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~   96 (155)
                          ..+++.++..+     +.+++++|+.++++||+++||||+|++ .+++.+.+.+++.
T Consensus       457 ~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~-~~~~~~~a~~~a~  516 (593)
T 3bf0_A          457 ENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGD-FDDAVAKAAELAK  516 (593)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECC-HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccC-HHHHHHHHHHHcC
Confidence                56778888887     889999999999999999999999998 8888887777544

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.46  E-value=8.5e-14  Score=103.52  Aligned_cols=93  Identities=18%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecc---------------------cccccccCChh-----------------
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLN---------------------ETKMGIIAPFW-----------------   42 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~---------------------e~~~Gl~~~~~-----------------   42 (155)
                      |+|.|.|||+.|+++||+||++ +++.|+.+                     +.+.|..+..+                 
T Consensus        86 v~g~a~~gG~~lA~a~D~i~a~-~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~  164 (240)
T 3rst_A           86 MGSMAASGGYYISTAADKIFAT-PETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSM  164 (240)
T ss_dssp             EEEEEETHHHHHHTTSSEEEEC-TTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHH
T ss_pred             ECCeehHhHHHHHHhCCeeEEC-CCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHH
Confidence            5899999999999999999999 99999999                     55667655443                 


Q ss_pred             ---------HHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceecCChhHHHHHHHHHHH
Q psy15240         43 ---------FVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLA   96 (155)
Q Consensus        43 ---------~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~   96 (155)
                               ....-.|.+....... ++.|+.+++++|+++||||++.+ .+++.+.+.+++.
T Consensus       165 l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~-~~~~~~~~~~~~~  225 (240)
T 3rst_A          165 VDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGF-YDDTITAMKKDHK  225 (240)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECC-HHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCC-HHHHHHHHHHHhC
Confidence                     1122334456665555 67899999999999999999999 8888777766543

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.31  E-value=1.3e-12  Score=101.06  Aligned_cols=94  Identities=12%  Similarity=0.087  Sum_probs=69.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHh-hCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-LGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |+|+|+|||+.++++||++|+. ++++|++      +.|. +++..+.+. .+...+.++    ..+++++|+++|+||+
T Consensus       205 V~G~a~GGGa~~~~~~D~via~-~~A~~~v------~~pe-g~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~  272 (327)
T 2f9i_A          205 VIGEGGSGGALGIGIANKVLML-ENSTYSV------ISPE-GAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDD  272 (327)
T ss_dssp             EEEEEBHHHHHTTCCCSEEEEE-TTCBCBS------SCHH-HHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSE
T ss_pred             EECCcChHHHHHHHCCCEEEEc-CCceEee------cCch-HHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceE
Confidence            5899999999999999999999 9998885      3344 444444444 444666666    7899999999999999


Q ss_pred             ecCCh--------h----HHHHHHHHHHHHHhcCChHHH
Q psy15240         80 EVTSE--------E----EAITRAETFLAQYATIPGAAR  106 (155)
Q Consensus        80 v~~~~--------~----~~~~~~~~~a~~l~~~~~~a~  106 (155)
                      |++.+        +    ++.+.+.+.++.+...++..+
T Consensus       273 VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l  311 (327)
T 2f9i_A          273 VISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEI  311 (327)
T ss_dssp             EECCCTTCGGGCHHHHHHHHHHHHHHHHHTTTTCCHHHH
T ss_pred             EecCCCCCCccCHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99932        3    555555555566655665533

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.30  E-value=8.5e-13  Score=102.39  Aligned_cols=94  Identities=13%  Similarity=-0.022  Sum_probs=72.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |+|+|+|||+.++++||++|+. ++++|++      +.|.++++.++++..+...+.++    ..+++++|+++|+||+|
T Consensus       219 V~G~a~GGGa~~~~~~D~via~-p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~V  287 (339)
T 2f9y_A          219 VIGEGGSGGALAIGVGDKVNML-QYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSI  287 (339)
T ss_dssp             EEEEEEHHHHHTTCCCSEEEEC-TTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCC
T ss_pred             EeCCcCcHHHHHHhccCeeeec-CCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEE
Confidence            5899999999999999999999 9999986      45666666666666677777777    67999999999999999


Q ss_pred             cCCh--------h----HHHHHHHHHHHHHhcCChHH
Q psy15240         81 VTSE--------E----EAITRAETFLAQYATIPGAA  105 (155)
Q Consensus        81 ~~~~--------~----~~~~~~~~~a~~l~~~~~~a  105 (155)
                      ++.+        +    ++.+.+.+.++.+...++..
T Consensus       288 V~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~  324 (339)
T 2f9y_A          288 IPEPLGGAHRNPEAMAASLKAQLLADLADLDVLSTED  324 (339)
T ss_dssp             CCCSTTCGGGCHHHHHHHHHHHHHHHTTTTTTSCHHH
T ss_pred             ecCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            9932        2    44455555555555555543

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.24  E-value=5.2e-12  Score=92.59  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=66.1

Q ss_pred             CCcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhH------------------HHHHHHhhCH--HHHHH
Q psy15240          1 MKGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWF------------------VDTMVHTLGP--RQTEL   58 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~------------------~~~l~~~~g~--~~a~~   58 (155)
                      |+|.|.++|+.|+++||.  |++. +++.|++++..-|. +..|.                  ...+++..|.  ..+.+
T Consensus       110 v~G~AaS~G~~Ia~a~d~g~r~a~-p~a~igih~p~~g~-~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~  187 (218)
T 1y7o_A          110 VMGMAASMGTVIASSGAKGKRFML-PNAEYMIHQPMGGT-GGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHA  187 (218)
T ss_dssp             EEEEEETHHHHHHTTSCTTCEEEC-TTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             EccEeHHHHHHHHHcCCcCcEEEc-CCcEEEEecccccc-cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            479999999999999999  9999 99999999987433 21222                  2557777776  57888


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCChhH
Q psy15240         59 ALTSGKMFTSAEALKVGLIDEEVTSEEE   86 (155)
Q Consensus        59 l~l~g~~~~a~eA~~~Glv~~v~~~~~~   86 (155)
                      ++..++.++++||+++||||+|++ .++
T Consensus       188 ~~~~~~~~ta~EA~e~GLVD~v~~-~~~  214 (218)
T 1y7o_A          188 DAERDNWMSAQETLEYGFIDEIMA-NNS  214 (218)
T ss_dssp             HHHSCCCBCHHHHHHHTSCSEECC-CC-
T ss_pred             HHhCCCEEcHHHHHHCCCCcEEcC-cCC
Confidence            999999999999999999999998 444

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.18  E-value=1.7e-11  Score=93.94  Aligned_cols=82  Identities=22%  Similarity=0.242  Sum_probs=70.9

Q ss_pred             CCcccchHH-HHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAG-CQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG-~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |+|+|+||| +.++++||++|+. ++++|+++           +...+++.+|..      ++++..+++++.++|+||.
T Consensus       198 V~G~~~GGg~a~~a~~~D~via~-~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~~Ae~~~~~Glvd~  259 (304)
T 2f9y_B          198 LTDPTMGGVSASFAMLGDLNIAE-PKALIGFA-----------GPRVIEQTVREK------LPPGFQRSEFLIEKGAIDM  259 (304)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEEC-TTCBEESS-----------CHHHHHHHHTSC------CCTTTTBHHHHGGGTCCSE
T ss_pred             EECCCccHHHHHHHhcCCEEEEe-CCcEEEee-----------cHHHHHHHhCcc------CCcccCCHHHHHhcCCccE
Confidence            579999999 7789999999999 99998887           344566677753      4689999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcC
Q psy15240         80 EVTSEEEAITRAETFLAQYATI  101 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~  101 (155)
                      |++ ++++.+.+.+++..+...
T Consensus       260 Vv~-~~el~~~l~~ll~~l~~~  280 (304)
T 2f9y_B          260 IVR-RPEMRLKLASILAKLMNL  280 (304)
T ss_dssp             ECC-HHHHHHHHHHHHHHHTTC
T ss_pred             EeC-cHHHHHHHHHHHHHhhcC
Confidence            999 789999999999999865

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.96  E-value=3e-09  Score=86.52  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=113.8

Q ss_pred             CcccchHH-HHHHhhcceeeeec------CceeeecccccccccCChhHHHHHHHhh-CHHHHHHH--HhcCCCCCHHHH
Q psy15240          2 KGHAPGAG-CQFAMSCEYRIMVG------PKYTIGLNETKMGIIAPFWFVDTMVHTL-GPRQTELA--LTSGKMFTSAEA   71 (155)
Q Consensus         2 ~G~a~GgG-~~la~~cD~~ia~~------~~a~~~~~e~~~Gl~~~~~~~~~l~~~~-g~~~a~~l--~l~g~~~~a~eA   71 (155)
                      .|.|+.|- ++|+++||..|+-.      +...+.+++.+||.+|...+..+|..+. |.......  -..|+++++++|
T Consensus       384 ~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (556)
T 2w3p_A          384 PGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEA  463 (556)
T ss_dssp             TTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHH
T ss_pred             CCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHH
Confidence            48899888 58999999999762      2479999999999999888888888665 54333322  245999999999


Q ss_pred             HHcCccceecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCHHH
Q psy15240         72 LKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENK-EKDLKNVVDLITSPQV  141 (155)
Q Consensus        72 ~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~-~~e~~~~~~~~~~~~~  141 (155)
                      .++|||+...+ +-+++++++-.++.-++.+|+++..+...+|.....+++..+ .....++...|..|+.
T Consensus       464 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (556)
T 2w3p_A          464 ERLGLVTASPD-DIDWADEIRIALEERAAMSPDALTGLEANLRFNGPETMETRIFGRLTAWQNWIFNRPNA  533 (556)
T ss_dssp             HHTTSSSBCCC-TTTHHHHHHHHHHHHHHSCHHHHHHHHHHHSSCSCCCHHHHHHTHHHHHHHHHHTSHHH
T ss_pred             HhcCCeecCcc-cCChHHHHHHHHHHHhccCcchhccchhhcccCCchhhhhHHHHHhHHHHHHhhcCCCC
Confidence            99999998877 799999999999999999999999999999988776666553 5566777777788874

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.55  E-value=5.2e-08  Score=70.72  Aligned_cols=91  Identities=20%  Similarity=0.216  Sum_probs=59.9

Q ss_pred             CCcccchHHHHHHhhcce--eeeecCceeeecccccccccCC---hh------------HHHHHHHhhCH--HHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAP---FW------------FVDTMVHTLGP--RQTELALT   61 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~---~~------------~~~~l~~~~g~--~~a~~l~l   61 (155)
                      |.|.|..+|.-++++||.  |++. +++.+++.....|....   ..            ....+.+..|.  ....+++.
T Consensus        92 v~g~AaS~g~~Ia~agd~~~~~a~-p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~  170 (208)
T 2cby_A           92 AMGMAASMGEFLLAAGTKGKRYAL-PHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSD  170 (208)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEEC-TTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             ECcEeHHHHHHHHhCCCcCCEEEc-CCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHh
Confidence            468899999999999999  9999 99999888765332110   00            01224444443  44566788


Q ss_pred             cCCCCCHHHHHHcCccceecCChhHHHHHHH
Q psy15240         62 SGKMFTSAEALKVGLIDEEVTSEEEAITRAE   92 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~   92 (155)
                      .+..+|++||+++||||+|.++.+++.+...
T Consensus       171 ~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~  201 (208)
T 2cby_A          171 RDRWFTAAEALEYGFVDHIITRAHVNGEAQL  201 (208)
T ss_dssp             TTCEEEHHHHHHHTSCSEECSCC--------
T ss_pred             CCcEEcHHHHHHcCCCcEecCchHHHHHHHH
Confidence            9999999999999999999987777765543

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=97.90  E-value=2.2e-05  Score=59.16  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=58.1

Q ss_pred             CcccchHHHHHHhhcce--eeeecCceeeecccccccccCChhHH---------------HHHHHhhC--HHHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPFWFV---------------DTMVHTLG--PRQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~~~~---------------~~l~~~~g--~~~a~~l~l~   62 (155)
                      .|.|..+|.-|+++||.  |++. +++.+.......|......-.               ..+.+..|  .....+++-.
T Consensus       148 ~G~AASaG~~Ia~Agd~gkr~a~-P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~dr  226 (277)
T 1tg6_A          148 VGQAASMGSLLLAAGTPGMRHSL-PNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMER  226 (277)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEEC-TTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSS
T ss_pred             ccEeHHHHHHHHHCCCcCCEEEe-cCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence            57889999999999999  9999 999998877654432111000               11222222  3445555555


Q ss_pred             CCCCCHHHHHHcCccceecCChhHHHH
Q psy15240         63 GKMFTSAEALKVGLIDEEVTSEEEAIT   89 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~~~~~~~~   89 (155)
                      +..+|++||+++||||+|.++.+++.+
T Consensus       227 d~~lta~EAle~GLID~I~~~~~~~~~  253 (277)
T 1tg6_A          227 DRYMSPMEAQEFGILDKVLVHPPQDGE  253 (277)
T ss_dssp             CEEECHHHHHHHTSCSEECSSCC----
T ss_pred             CcccCHHHHHHCCCCCEecCcchhhcc
Confidence            667899999999999999985555443

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=97.89  E-value=3e-05  Score=55.94  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=58.7

Q ss_pred             CCcccchHHHHHHhhcc--eeeeecCceeeecccccccccC---Chh------------HHHHHHHhhC--HHHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIA---PFW------------FVDTMVHTLG--PRQTELALT   61 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~---~~~------------~~~~l~~~~g--~~~a~~l~l   61 (155)
                      +.|.|..+|.-|+++||  .|++. +++.|.+....-|...   +..            ....+.+.-|  ......++-
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~-p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~  170 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFAL-PNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTD  170 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEEC-TTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHT
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEc-CCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            35889999999999999  69999 9999988765433221   100            0112333333  345566666


Q ss_pred             cCCCCCHHHHHHcCccceecCCh
Q psy15240         62 SGKMFTSAEALKVGLIDEEVTSE   84 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~~~   84 (155)
                      ...-+|++||+++||||+|+++.
T Consensus       171 ~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          171 RDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             SCCCEEHHHHHHHTSCSEECCCC
T ss_pred             cCceecHHHHHHcCCcCEecCCc
Confidence            66779999999999999999854

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=97.88  E-value=1.6e-05  Score=57.90  Aligned_cols=81  Identities=15%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             CcccchHHHHHHhhcce--eeeecCceeeecccccccccCC---hh----HH--------HHHHHhh--CHHHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAP---FW----FV--------DTMVHTL--GPRQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~---~~----~~--------~~l~~~~--g~~~a~~l~l~   62 (155)
                      .|.|..+|.-|+++||.  |++. +++.+.+.....|....   ..    -.        ..+.+..  ......+++-.
T Consensus       104 ~g~AAS~g~~Ia~agd~g~i~a~-p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~  182 (215)
T 2f6i_A          104 FGLVASMASVILASGKKGKRKSL-PNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  182 (215)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEEC-TTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             eeEhHhHHHHHHHcCCcccEEEc-CCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence            57899999999999999  9999 99999887765442210   00    00        0112222  34455556555


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q psy15240         63 GKMFTSAEALKVGLIDEEVTS   83 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~~   83 (155)
                      ...+|++||+++||||+|.++
T Consensus       183 ~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          183 DYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             TCEECHHHHHHHTSCSEECCC
T ss_pred             CeecCHHHHHHCCCCCEecCC
Confidence            566799999999999999884

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=97.85  E-value=7.9e-06  Score=58.89  Aligned_cols=86  Identities=21%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             CcccchHHHHHHhhcce--eeeecCceeeecccccccccCCh---------------hHHHHHHHhhC--HHHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPF---------------WFVDTMVHTLG--PRQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~---------------~~~~~l~~~~g--~~~a~~l~l~   62 (155)
                      .|.|..+|.-|+++||.  |++. +++.+.+....-|.....               .....+.+..|  .....+++-.
T Consensus        96 ~G~AaS~g~~i~~ag~~g~r~~~-p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~  174 (201)
T 3p2l_A           96 IGLAASMGSLLLAGGAKGKRYSL-PSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDR  174 (201)
T ss_dssp             EEEEETHHHHHHHTSSTTCEEEC-TTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSS
T ss_pred             cCEehhHHHHHHHcCccCCEEEc-CCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhc
Confidence            57889999999999998  9999 999998877654322110               00111223333  3445555544


Q ss_pred             CCCCCHHHHHHcCccceecCChhHHH
Q psy15240         63 GKMFTSAEALKVGLIDEEVTSEEEAI   88 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~~~~~~~   88 (155)
                      ..-++++||+++||||+|+++.+++.
T Consensus       175 ~~~lta~EA~e~GliD~I~~~~~~ll  200 (201)
T 3p2l_A          175 DNFMMADEAKAYGLIDHVIESREAII  200 (201)
T ss_dssp             CEEEEHHHHHHHTSCSEECCCSCC--
T ss_pred             CeeecHHHHHHcCCccEecCCHHHhh
Confidence            45579999999999999998666553

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.72  E-value=7.3e-06  Score=67.69  Aligned_cols=90  Identities=12%  Similarity=0.173  Sum_probs=63.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccc--cccCChhHHHHHHHhhCHHHHHHHH-hcCCCCCHHH-----H-
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKM--GIIAPFWFVDTMVHTLGPRQTELAL-TSGKMFTSAE-----A-   71 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~--Gl~~~~~~~~~l~~~~g~~~a~~l~-l~g~~~~a~e-----A-   71 (155)
                      |.|+|.|||.-. ..||++|++++++++++.-.++  ++.+        ...++..+|.+++ .+|+.+++++     . 
T Consensus       188 v~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~--------~~~~d~~~A~el~~~tge~v~~e~lgga~~h  258 (587)
T 1pix_A          188 IYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNP--------KGHVDLEYANEIADMVDRTGKTEPPGAVDIH  258 (587)
T ss_dssp             ECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCS--------SSSCCHHHHHHHHHHHHTTCCCCCSSBHHHH
T ss_pred             EecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhcc--------ccccchhHHHHHHHHhCCccChhhcccHHHH
Confidence            579999999999 9999998883558777743321  1110        0126888999999 8888887664     2 


Q ss_pred             -HHcCccceecCChhHHHHHHHHHHHHHh
Q psy15240         72 -LKVGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        72 -~~~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                       .+.|++|.+++|+++..+.+.+++.-+-
T Consensus       259 ~~~~GvvD~vv~~e~~a~~~~r~~ls~lp  287 (587)
T 1pix_A          259 YTETGFMREVYASEEGVLEGIKKYVGMLP  287 (587)
T ss_dssp             TTTSCCSCEEESSHHHHHHHHHHHHHTSC
T ss_pred             HhhcCceeEecCCHHHHHHHHHHHHHhCC
Confidence             3689999999966656666666655443

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=97.63  E-value=3.8e-05  Score=54.88  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             CCcccchHHHHHHhhcce--eeeecCceeeecccccccccCCh---h------------HHHHHHHhhC--HHHHHHHHh
Q psy15240          1 MKGHAPGAGCQFAMSCEY--RIMVGPKYTIGLNETKMGIIAPF---W------------FVDTMVHTLG--PRQTELALT   61 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~--~ia~~~~a~~~~~e~~~Gl~~~~---~------------~~~~l~~~~g--~~~a~~l~l   61 (155)
                      +.|.|..+|.-|+++||.  |++. +++.++......|.....   .            ....+.+..|  ......++-
T Consensus        91 v~g~AaS~g~~Ia~ag~~~~r~a~-p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~  169 (193)
T 1yg6_A           91 CMGQAASMGAFLLTAGAKGKRFCL-PNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTE  169 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEEC-TTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred             EeeeHHHHHHHHHHCCCcCcEEEe-cCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            358899999999999999  9999 999998877654432110   0            0011233333  344555554


Q ss_pred             cCCCCCHHHHHHcCccceecC
Q psy15240         62 SGKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~   82 (155)
                      .+..+|++||+++||||+|.+
T Consensus       170 ~~~~~ta~eA~~~GliD~i~~  190 (193)
T 1yg6_A          170 RDRFLSAPEAVEYGLVDSILT  190 (193)
T ss_dssp             SCEEEEHHHHHHHTSSSEECC
T ss_pred             CCeEEcHHHHHHcCCCCEecC
Confidence            556679999999999999987

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.61  E-value=0.00018  Score=58.74  Aligned_cols=78  Identities=15%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------HH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------LK   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~~   73 (155)
                      |.|+|+|||.-....||++|++++++.+++.                    |+.....  .+|+.+++++.       ..
T Consensus       176 v~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~~--~~ge~v~~e~LGGa~~h~~~  233 (530)
T 3iav_A          176 VVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIKT--VTGEDVGFEELGGARTHNST  233 (530)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHHH--HhCCcCChhhcchHHHHHhc
Confidence            5799999999888899999998334766653                    3322222  36888998875       68


Q ss_pred             cCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      .|++|.+++|+++..+.+.+++.-|-.
T Consensus       234 sGv~d~va~de~~a~~~~r~~ls~lp~  260 (530)
T 3iav_A          234 SGVAHHMAGDEKDAVEYVKQLLSYLPS  260 (530)
T ss_dssp             SCCCSEEESSHHHHHHHHHHHHHHSCS
T ss_pred             cCceeEEecChHHHHHHHHHHHHhccc
Confidence            999999999767788888888887743

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.52  E-value=0.00027  Score=57.75  Aligned_cols=75  Identities=15%  Similarity=0.247  Sum_probs=55.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------H
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------L   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~   72 (155)
                      |.|+|.|||.-....||++|+. ++ +.+++       .             |++....  .+|+.+++++.       .
T Consensus       184 v~Gp~~GG~a~s~a~~D~vi~~-~~~a~i~~-------a-------------GP~vI~~--~~ge~v~~E~LGGa~~h~~  240 (531)
T 3n6r_B          184 IMGPCAGGAVYSPAMTDFIFMV-KDSSYMFV-------T-------------GPDVVKT--VTNEQVSAEELGGATTHTR  240 (531)
T ss_dssp             ECSCCBGGGGHHHHHSSEEEEE-TTTCBCBS-------S-------------CHHHHHH--HHCCCCCHHHHHBHHHHHH
T ss_pred             EeCCcchHHHHHhhhCCEEEEe-cCCceEee-------c-------------CHHHHHH--HhCCccChhhcchHHHHhh
Confidence            4699999998777779999999 64 65443       3             2222222  36899999998       8


Q ss_pred             HcCccceecCChhHHHHHHHHHHHHH
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFLAQY   98 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a~~l   98 (155)
                      +.|++|.+++|+++..+.+.+++.-|
T Consensus       241 ~sG~~d~v~~~e~~a~~~~r~lls~L  266 (531)
T 3n6r_B          241 KSSVADAAFENDVEALAEVRRLVDFL  266 (531)
T ss_dssp             TTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             ccCcceEEeCCHHHHHHHHHHHHHhc
Confidence            99999999996667777777776655

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.39  E-value=0.00025  Score=51.12  Aligned_cols=80  Identities=24%  Similarity=0.325  Sum_probs=56.1

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccc-c---CChh------------HHHHHHHhhC--HHHHHHHHh
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGI-I---APFW------------FVDTMVHTLG--PRQTELALT   61 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl-~---~~~~------------~~~~l~~~~g--~~~a~~l~l   61 (155)
                      -|.|.+.|..|++++|  .|++. +++++-+.....|. .   .+.-            ....+.+.-|  .....+++-
T Consensus       104 ~G~AaS~as~il~aG~~gkR~~l-P~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~  182 (205)
T 4gm2_A          104 LGKAYGIACILASSGKKGYRFSL-KNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLE  182 (205)
T ss_dssp             EEEEETHHHHHHTTSCTTCEEEC-TTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTT
T ss_pred             EeeehhHHHHHHhcCCCCCEEec-CCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            4788899999999999  59999 99999887776554 1   1110            1122222333  234445555


Q ss_pred             cCCCCCHHHHHHcCccceecC
Q psy15240         62 SGKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        62 ~g~~~~a~eA~~~Glv~~v~~   82 (155)
                      ...-++++||+++||||+|++
T Consensus       183 rd~~msa~EA~eyGlID~V~~  203 (205)
T 4gm2_A          183 RDKYFNADEAVDFKLIDHILE  203 (205)
T ss_dssp             SCEEEEHHHHHHTTSCSEECC
T ss_pred             CCcccCHHHHHHcCCccEeec
Confidence            566699999999999999987

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.36  E-value=0.0004  Score=56.70  Aligned_cols=77  Identities=21%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHH-----HHH--H
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSA-----EAL--K   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----eA~--~   73 (155)
                      |.|+|+||+.-....||++|++ +++.+++.                    |++....  -+|+.++.+     +.+  +
T Consensus       174 v~gp~~GG~a~s~~l~D~ii~~-~~a~i~~a--------------------GP~vI~~--~~ge~~~~e~lggae~h~~~  230 (523)
T 1on3_A          174 IAGPCAGGASYSPALTDFIIMT-KKAHMFIT--------------------GPQVIKS--VTGEDVTADELGGAEAHMAI  230 (523)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEE-TTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHSHHHHHHT
T ss_pred             EcCCCchHHHHHHhhCCeEEEe-CCCEEEec--------------------CHHHHHH--HhCCcCChHhcccHHHHhhc
Confidence            4699999999888999999999 88766555                    2322222  247777764     323  6


Q ss_pred             cCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      .|++|.+++|+.++.+.+.+++.-+-.
T Consensus       231 ~G~vd~vv~d~~~~~~~~r~lL~~lp~  257 (523)
T 1on3_A          231 SGNIHFVAEDDDAAELIAKKLLSFLPQ  257 (523)
T ss_dssp             TCCCSEEESSHHHHHHHHHHHHHTSCS
T ss_pred             cCceEEEeCCHHHHHHHHHHHHHhcCc
Confidence            899999999777788888887776653

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.19  E-value=0.00072  Score=51.13  Aligned_cols=79  Identities=19%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CCcccchHHHH-HHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQ-FAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~-la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |-|+|+||+.. +++.+|++++. +++.+++       ..|.+....+-+.+.          -+.-+++.+.+.|+||.
T Consensus       201 v~g~~~GG~~as~a~~~D~i~a~-p~A~i~~-------aGP~vi~~~~~~~~~----------e~~~~Ae~~~~~G~iD~  262 (285)
T 2f9i_B          201 LTHPTTGGVSASFASVGDINLSE-PKALIGF-------AGRRVIEQTINEKLP----------DDFQTAEFLLEHGQLDK  262 (285)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEEC-TTCBEES-------SCHHHHHHHHTSCCC----------TTTTBHHHHHHTTCCSE
T ss_pred             EeCCccHHHHHHhhhCCCEEEEe-CCcEEEE-------cCHHHHHHHhcccch----------HhHhhHHHHHhcCCccE
Confidence            35889999964 48899999999 8876554       323332222222211          12235777889999999


Q ss_pred             ecCChhHHHHHHHHHHHHH
Q psy15240         80 EVTSEEEAITRAETFLAQY   98 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l   98 (155)
                      |++ ++++.+.+.+++.-+
T Consensus       263 Iv~-~~e~r~~l~~~L~~l  280 (285)
T 2f9i_B          263 VVH-RNDMRQTLSEILKIH  280 (285)
T ss_dssp             ECC-GGGHHHHHHHHHHHT
T ss_pred             EeC-hHHHHHHHHHHHHHh
Confidence            999 788887777776654

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.12  E-value=0.0014  Score=53.82  Aligned_cols=76  Identities=20%  Similarity=0.295  Sum_probs=54.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHH-----HH--H
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSA-----EA--L   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----eA--~   72 (155)
                      |.|+|.||+.-....||++|+. ++ +.+++.                    |++....  -+|+.++.+     +.  .
T Consensus       187 v~gp~~GG~a~s~al~D~ii~~-~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~lggae~h~~  243 (548)
T 2bzr_A          187 IMGAAAGGHVYSPALTDFVIMV-DQTSQMFIT--------------------GPDVIKT--VTGEEVTMEELGGAHTHMA  243 (548)
T ss_dssp             ECSEEESGGGHHHHHSSEEEEE-TTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHHH
T ss_pred             ecCCCchHHHHHHHhCCeEEec-cCceeEEec--------------------cHHHHHH--HhCCcCChHhcccHHHHhh
Confidence            4699999998877899999999 75 765554                    3322222  247777764     32  3


Q ss_pred             HcCccceecCChhHHHHHHHHHHHHHh
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                      +.|++|.+++|+.++.+.+.+++.-+-
T Consensus       244 ~sG~~d~vv~d~~~~~~~~r~lls~lp  270 (548)
T 2bzr_A          244 KSGTAHYAASGEQDAFDYVRELLSYLP  270 (548)
T ss_dssp             TSSCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             ccCceeEEeCCHHHHHHHHHHHHHhcC
Confidence            689999999976777777777766554

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.12  E-value=0.0014  Score=53.78  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=57.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------HH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------LK   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~~   73 (155)
                      |.|+|.|||.-....||++|..++++       .+++.             |+.... . .+|+.++.++.       ..
T Consensus       204 v~G~~~GGga~~~a~~d~vim~e~~a-------~i~~a-------------GP~vik-~-~~ge~~~~e~LGGa~~h~~~  261 (555)
T 3u9r_B          204 VMGSCTAGGAYVPAMSDETVMVREQA-------TIFLA-------------GPPLVK-A-ATGEVVSAEELGGADVHCKV  261 (555)
T ss_dssp             ECSCCBGGGGHHHHTSSEEEEETTTC-------BCBSS-------------CHHHHH-H-HHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCCCccHHHHHHhCCceEEecCCc-------eEEEc-------------cHHHHH-H-HhcCccChhhccchhhhhhc
Confidence            46999999999999999988873445       44443             111111 1 46899999988       78


Q ss_pred             cCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      .|++|.+++|+++....+++++.-|-.
T Consensus       262 sGv~d~v~~de~~a~~~~r~~ls~Lp~  288 (555)
T 3u9r_B          262 SGVADHYAEDDDHALAIARRCVANLNW  288 (555)
T ss_dssp             TCSCSEEESSHHHHHHHHHHHHHTSCC
T ss_pred             cCceeEEeCCHHHHHHHHHHHHHhCCc
Confidence            999999999777777777777665543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.11  E-value=0.0013  Score=53.63  Aligned_cols=77  Identities=25%  Similarity=0.325  Sum_probs=56.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-e-eeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHH-----HHH-
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-Y-TIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSA-----EAL-   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a-~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----eA~-   72 (155)
                      |.|+|+||+.-....||++|++ ++ + .+++       .             |++....  .+|+.++.+     +.+ 
T Consensus       170 v~gp~~GG~a~s~~l~D~~i~~-~~~a~~i~~-------a-------------GP~vI~~--~~ge~~~~e~lggae~~~  226 (522)
T 1x0u_A          170 MAGPAAGGAVYSPALTDFIIMI-KGDAYYMFV-------T-------------GPEITKV--VLGEEVSFQDLGGAVVHA  226 (522)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEE-CSTTCEEES-------S-------------CHHHHHH--TTCCCCCHHHHHBHHHHH
T ss_pred             EcCCCchHHHHHHhcCCeEEEe-cCCccEEEe-------c-------------CHHHHHH--HhCCcCChhhcchHHHHh
Confidence            4699999999888999999999 76 6 5444       2             2222221  357788764     323 


Q ss_pred             -HcCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         73 -KVGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        73 -~~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                       +.|++|.+++|+.++.+.+.+++.-+-.
T Consensus       227 ~~~G~~d~vv~~~~~~~~~~~~ll~~lp~  255 (522)
T 1x0u_A          227 TKSGVVHFMVDSEQEAINLTKRLLSYLPS  255 (522)
T ss_dssp             HTTCCCSEEESCHHHHHHHHHHHHHHSCS
T ss_pred             hcCceeEEEeCCHHHHHHHHHHHHHhccc
Confidence             6899999999777888888888877654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.71  E-value=0.0039  Score=50.97  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=52.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCc-eeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHH-----HHH--
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPK-YTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSA-----EAL--   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~-a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----eA~--   72 (155)
                      |.|+|.|||.-....||++|+. ++ +.       +++.             |++....  .+|+.++.+     +.+  
T Consensus       177 v~Gp~~GG~a~s~al~D~vi~~-~~~a~-------i~~a-------------GP~vi~~--~~ge~v~~e~lggae~~~~  233 (527)
T 1vrg_A          177 IAGPCAGGAVYSPALTDFIVMV-DQTAR-------MFIT-------------GPNVIKA--VTGEEISQEDLGGAMVHNQ  233 (527)
T ss_dssp             EEEEEBGGGGHHHHHSSEEEEE-TTTCB-------CBSS-------------CHHHHHH--HHCCCCCHHHHHBHHHHHH
T ss_pred             EeCCCchHHHHHHHcCCeEEEe-cCceE-------EEec-------------CHHHHHH--HhCCCCCccccccHHHHhh
Confidence            4689999998877899999999 76 65       4443             2222221  246777754     323  


Q ss_pred             HcCccceecCChhHHHHHHHHHHHHHh
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                      +.|++|.+++|+.++.+.+.+++.-+-
T Consensus       234 ~~G~vd~vv~d~~~~~~~~~~~Ls~lp  260 (527)
T 1vrg_A          234 KSGNAHFLADNDEKAMSLVRTLLSYLP  260 (527)
T ss_dssp             TSCCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             cccceEEEecCHHHHHHHHHHHHHhcC
Confidence            689999999976777777777766554

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=96.18  E-value=0.013  Score=49.60  Aligned_cols=74  Identities=8%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCC--CHHH------HH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMF--TSAE------AL   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~--~a~e------A~   72 (155)
                      |.|+|+|||.-+...||++|++ +++       .+++..|..             ...  .+|+.+  |.++      ..
T Consensus       253 V~G~c~GGgAY~paL~D~vImv-~~s-------~ifltGP~v-------------Ik~--~tGeeV~~s~eeLGGA~vh~  309 (758)
T 3k8x_A          253 VTCRSVGIGAYLVRLGQRAIQV-EGQ-------PIILTGAPA-------------INK--MLGREVYTSNLQLGGTQIMY  309 (758)
T ss_dssp             ECSCEETHHHHHHHHTCEEEEE-TTC-------CEESSCHHH-------------HHH--HHTSCCCSCTHHHHSHHHHT
T ss_pred             EccCCchHHHHHHhhCCEEEEE-CCc-------eEEEeCHHH-------------HHH--HhCCccccCchhcchhhHHH
Confidence            5799999999999999999999 775       344441111             111  146655  4332      24


Q ss_pred             HcCccceecCChhHHHHHHHHHHHH
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFLAQ   97 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a~~   97 (155)
                      ..|++|.+++|+++..+.+.++..-
T Consensus       310 ~sGvad~va~dd~eal~~ir~lLsy  334 (758)
T 3k8x_A          310 NNGVSHLTAVDDLAGVEKIVEWMSY  334 (758)
T ss_dssp             TTTSSSEEESSHHHHHHHHHHHHTT
T ss_pred             hcCCeeEEecCHHHHHHHHHHHHhh
Confidence            6899999999766666666665443

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=96.18  E-value=0.012  Score=48.70  Aligned_cols=89  Identities=11%  Similarity=-0.027  Sum_probs=57.3

Q ss_pred             cchHHHHHHhhcceeeeecCceeeeccccccc------------cc---------CChhHH-----------HHHH----
Q psy15240          5 APGAGCQFAMSCEYRIMVGPKYTIGLNETKMG------------II---------APFWFV-----------DTMV----   48 (155)
Q Consensus         5 a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~G------------l~---------~~~~~~-----------~~l~----   48 (155)
                      +.-+|.-|+++||.+++. +++.++...+..+            +-         -..+-.           ..+.    
T Consensus       130 aas~~y~lAsaad~i~~~-P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~  208 (593)
T 3bf0_A          130 YSQGQYYLASFANKIWLS-PQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIG  208 (593)
T ss_dssp             EEHHHHHHHTTSSEEEEC-TTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhCCEEEEC-CCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHH
Confidence            445778999999999999 9998887776432            21         000000           0011    


Q ss_pred             -------------HhhCHHHHHHHHhc-------CCCCCHHHHHHcCccceecCChhHHHHHHHHHH
Q psy15240         49 -------------HTLGPRQTELALTS-------GKMFTSAEALKVGLIDEEVTSEEEAITRAETFL   95 (155)
Q Consensus        49 -------------~~~g~~~a~~l~l~-------g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a   95 (155)
                                   +.+.......++-.       +..+++++|+++||||+|.. .+++.+...+..
T Consensus       209 ~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~-~~e~~~~l~~~~  274 (593)
T 3bf0_A          209 ELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALAS-SAEIEKALTKEF  274 (593)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCC-HHHHHHHHHHHh
Confidence                         11222333333333       78999999999999999997 787776665543

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=95.56  E-value=0.04  Score=47.00  Aligned_cols=75  Identities=13%  Similarity=0.107  Sum_probs=49.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCC--CH------HHHH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMF--TS------AEAL   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~--~a------~eA~   72 (155)
                      |.|+|+|||.-++..||++|+. +++.       +++..|..    +..           .+|+.+  +.      +-..
T Consensus       266 V~G~~~GGgAy~~~lgD~vI~~-~~a~-------i~ltGp~v----i~~-----------~~Ge~vy~s~e~LGGa~v~~  322 (793)
T 2x24_A          266 VSCRALGIGAYLVRLGQRVIQV-ENSH-------IILTGATA----LNK-----------VLGRDVYTSNNQLGGVQIMH  322 (793)
T ss_dssp             ECSEEETHHHHHHHHTCCEEEE-TTCE-------EESSCHHH----HHH-----------HHSSCCCSCHHHHHSHHHHT
T ss_pred             EecCCchHHHHHHhhCCeEEEe-cccc-------EEecCHHH----HHH-----------hcCCcccCChhhhccHHHHH
Confidence            4699999999999999999999 7754       34331111    111           124443  32      1256


Q ss_pred             HcCccceecCChhHHHHHHHHHHHHH
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFLAQY   98 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a~~l   98 (155)
                      ..|++|.+++|+.+..+.+.+++.-+
T Consensus       323 ~~Gv~d~vv~dd~ea~~~ir~~Lsyl  348 (793)
T 2x24_A          323 HNGVSHVTVPDDFEGVCTILEWLSYM  348 (793)
T ss_dssp             TTTSCSEEESSHHHHHHHHHHHHTTS
T ss_pred             hcCceEEEeCCHHHHHHHHHHHHHhc
Confidence            79999999997666666666665444

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.24  E-value=0.043  Score=45.36  Aligned_cols=95  Identities=13%  Similarity=0.096  Sum_probs=57.7

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccc--cccCChhHHHHHHHh---hCHHHHHHHHhcCCCCCHHHHH--H
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKM--GIIAPFWFVDTMVHT---LGPRQTELALTSGKMFTSAEAL--K   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~--Gl~~~~~~~~~l~~~---~g~~~a~~l~l~g~~~~a~eA~--~   73 (155)
                      |-|+|.|||.-.++++|++++. +++.+.+.-.++  |+.|.+   ...+.-   +......+-..+.+.+.+.+.+  .
T Consensus       189 v~Gp~~gGgAy~a~~~~vim~~-~~a~i~~aGP~vI~~~~p~g---~~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~  264 (588)
T 3gf3_A          189 IYGTNPAGGGYHSISPTILIAH-QDANMAVGGAGILSGMNPKG---YIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDE  264 (588)
T ss_dssp             ECSEEETHHHHHHHSSSEEEEE-TTCEEESSCCC------------------CHHHHHHHHHHHHTTCCCTTBHHHHTTT
T ss_pred             EeCCCCchhhhHhhCCeEEEEE-CCcEEEecChhhhcccCccc---cccccchhhhhhhhccccccChhhccchhhhccc
Confidence            4689999987668888888888 888877765443  111100   011110   0011112222467778777777  5


Q ss_pred             cCccceecCChhHHHHHHHHHHHHHh
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                      .|++|.+++|+++..+.+++++.-|-
T Consensus       265 sGv~d~~a~de~~al~~~r~~ls~Lp  290 (588)
T 3gf3_A          265 TGFFREVYQNDLGVIDGIKKYISYLP  290 (588)
T ss_dssp             SCCSCEEESSHHHHHHHHHHHHHTSC
T ss_pred             cccceEEeCCHHHHHHHHHHHHHhCC
Confidence            89999999977777777777776654

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=94.91  E-value=0.021  Score=46.59  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             CcccchHHHHHHh----hcceeeeecCceeeecccccccccCChhHHHHHHHhh-CH----HHH-HHHH--hcCCCCCHH
Q psy15240          2 KGHAPGAGCQFAM----SCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTL-GP----RQT-ELAL--TSGKMFTSA   69 (155)
Q Consensus         2 ~G~a~GgG~~la~----~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~-g~----~~a-~~l~--l~g~~~~a~   69 (155)
                      -|+|+|||.--..    .+|++|+. +++++++       ..|-+.+..+-+.. -.    ... .++.  +.-..-++.
T Consensus       406 ~g~~~GGg~~~~a~~a~~~D~v~a~-p~A~i~v-------~gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y~~~~~~~~  477 (522)
T 1x0u_A          406 VRKSYGGAHIAMSIKSLGADLVYAW-PTAEIAV-------TGPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFANPY  477 (522)
T ss_dssp             EEEEEHHHHHHTCCGGGTCSEEEEC-TTCEEES-------SCHHHHHHHHTSSSSSSSSSSSSSSHHHHHHHHHHHSSSH
T ss_pred             eCCcccHHHHHhcccccCCCEEEEe-CCCEEEe-------cCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhcCCHH
Confidence            3788888764333    49999999 8875554       33344333333221 10    000 0111  111235667


Q ss_pred             HHHHcCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         70 EALKVGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        70 eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      .+.+.|+||.|++ +.++.+.....++.+..
T Consensus       478 ~~~~~G~iD~II~-p~~tR~~L~~~L~~~~~  507 (522)
T 1x0u_A          478 WAAEKGLVDDVIE-PKDTRRVIVAGLEMLKT  507 (522)
T ss_dssp             HHHHTTSSSEECC-GGGHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCcEeEC-HHHHHHHHHHHHHHHhh
Confidence            8999999999999 98888888777776654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=93.98  E-value=0.13  Score=42.02  Aligned_cols=89  Identities=17%  Similarity=0.165  Sum_probs=54.1

Q ss_pred             cccchHHHHHHhh-----cceeeeecCceeeecccccccccCChhHHHHHHHhh-----CHHHHHH-HH--hcCCCCCHH
Q psy15240          3 GHAPGAGCQFAMS-----CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTL-----GPRQTEL-AL--TSGKMFTSA   69 (155)
Q Consensus         3 G~a~GgG~~la~~-----cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~-----g~~~a~~-l~--l~g~~~~a~   69 (155)
                      |.|+|||.- +++     +|++++- +++++       ++..+-+.+..+-+.-     -+...+. +.  +.-+.-++.
T Consensus       412 g~~~gGg~~-am~~~~~~~d~~~a~-p~a~~-------~Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~  482 (527)
T 1vrg_A          412 RKAYGGAYI-AMGSKHLGADMVLAW-PSAEI-------AVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPY  482 (527)
T ss_dssp             EEEEHHHHH-HTTCGGGTCSEEEEC-TTCEE-------ESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHH
T ss_pred             CCcccHHHH-HhcCCCCCCCEEEEc-CCCeE-------EecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHH
Confidence            778877764 443     7887777 77654       4444444444433221     1111111 22  122246778


Q ss_pred             HHHHcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240         70 EALKVGLIDEEVTSEEEAITRAETFLAQYATI  101 (155)
Q Consensus        70 eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~  101 (155)
                      .+.+.|+||+|++ +.+..+.....++.+...
T Consensus       483 ~~~~~g~iD~II~-p~~tR~~l~~~L~~l~~~  513 (527)
T 1vrg_A          483 IAASRGYVDMVID-PRETRKYIMRALEVCETK  513 (527)
T ss_dssp             HHHHTTSSSEECC-GGGHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCeeeC-HHHHHHHHHHHHHHHhcC
Confidence            8999999999999 988887777777766543

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=91.42  E-value=0.43  Score=38.94  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             cccchHHHHHHhh----cceeeeecCceeeecccccccccCChhHHHHHHHh-h----CHHHHH-HHH--hcCCCCCHHH
Q psy15240          3 GHAPGAGCQFAMS----CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-L----GPRQTE-LAL--TSGKMFTSAE   70 (155)
Q Consensus         3 G~a~GgG~~la~~----cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~----g~~~a~-~l~--l~g~~~~a~e   70 (155)
                      |.++|||.--...    +|++++- +++       .+++..+-+.+..+.+. +    -....+ ++.  +.-..-++..
T Consensus       408 g~~~Ggg~~am~~~~~~~d~~~a~-p~a-------~~~Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~  479 (523)
T 1on3_A          408 RKAYGGSYLAMCNRDLGADAVYAW-PSA-------EIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYV  479 (523)
T ss_dssp             EEEEHHHHHTTTCGGGTCSEEEEC-TTC-------EEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHH
T ss_pred             CCcccHHHHHhcccCCCCCEEEEc-CCC-------eEEecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHH
Confidence            6788877643333    6777766 665       45555444444443322 1    111111 122  1112366788


Q ss_pred             HHHcCccceecCChhHHHHHHHHHHHHHhcC
Q psy15240         71 ALKVGLIDEEVTSEEEAITRAETFLAQYATI  101 (155)
Q Consensus        71 A~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~  101 (155)
                      +.+.|+||+|++ +.+..+.....++.+...
T Consensus       480 ~a~~g~iD~II~-p~~tR~~l~~~L~~l~~~  509 (523)
T 1on3_A          480 AAARGQVDDVID-PADTRRKIASALEMYATK  509 (523)
T ss_dssp             HHHTTSSSEECC-GGGHHHHHHHHHHHGGGC
T ss_pred             HHhcCCCCEeeC-HHHHHHHHHHHHHHHhcC
Confidence            999999999999 888887777777766543

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=91.16  E-value=0.39  Score=39.71  Aligned_cols=92  Identities=14%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             CcccchHHHHHHhh-----c--ceeeeecCceeeecccccccccCChhHHHHHH-HhhCHH---------HH---HHHHh
Q psy15240          2 KGHAPGAGCQFAMS-----C--EYRIMVGPKYTIGLNETKMGIIAPFWFVDTMV-HTLGPR---------QT---ELALT   61 (155)
Q Consensus         2 ~G~a~GgG~~la~~-----c--D~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~-~~~g~~---------~a---~~l~l   61 (155)
                      -|.++|||. ++++     .  |++++- ++++++       +..+-+.+..+. ...-..         .+   .++.-
T Consensus       452 ~g~~~Ggg~-~am~~~~~~~~~d~~~a~-p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~  522 (587)
T 1pix_A          452 LRKGTAAAH-YVLGGPQGNDTNAFSIGT-AATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQ  522 (587)
T ss_dssp             CSEEETTHH-HHTTCTTCTTTEEEEEEC-TTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             cCCCccHHH-HHhcCcccCcccceeeec-cCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHH
Confidence            366777774 5555     4  888888 777655       443444443333 221110         00   11110


Q ss_pred             -cCCCCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcCCh
Q psy15240         62 -SGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPG  103 (155)
Q Consensus        62 -~g~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~~  103 (155)
                       .-+..++..+.+.|+||.|++ +.+........++.+...+.
T Consensus       523 ~y~~~~~p~~aa~~g~iD~VI~-p~~tR~~l~~~L~~~~~~~~  564 (587)
T 1pix_A          523 AFYTKSRPKVCAELGLVDEIVD-MNKIRGYVEAFTEAAYQNPE  564 (587)
T ss_dssp             HHHHTTSHHHHHHHTSSSEECC-TTTHHHHHHHHHHHHTTSCS
T ss_pred             HHHHhCCHHHHHhcCCCccccC-HHHHHHHHHHHHHHHhcCCc
Confidence             112588999999999999999 99888888888887776664

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=88.33  E-value=0.6  Score=38.31  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             cccchHHHHHHh----hcceeeeecCceeeecccccccccCChhHHHHHHHh-hCH------H--HHH-HHHh--cCCCC
Q psy15240          3 GHAPGAGCQFAM----SCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-LGP------R--QTE-LALT--SGKMF   66 (155)
Q Consensus         3 G~a~GgG~~la~----~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~g~------~--~a~-~l~l--~g~~~   66 (155)
                      |.|+|||.--..    .+|++++- ++++++       +..+-+.+..+.+. +-.      .  ..+ ++.-  .-..-
T Consensus       429 g~~~Ggg~~am~~~~~~~d~~~aw-p~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~~~  500 (548)
T 2bzr_A          429 RKAYGGAYCVMGSKDMGCDVNLAW-PTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLV  500 (548)
T ss_dssp             EEEEHHHHHHTTCGGGTCSEEEEC-TTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHS
T ss_pred             CCcchHHHHHhccccCCCCEEEEc-CCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHHhhC
Confidence            778888764332    38888888 776554       44444444443322 111      0  111 1221  11124


Q ss_pred             CHHHHHHcCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         67 TSAEALKVGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        67 ~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      ++..+.+.|+||+|++ +.+........++.+..
T Consensus       501 ~p~~~a~~g~iD~II~-p~~tR~~l~~~L~~l~~  533 (548)
T 2bzr_A          501 NPYVAAERGYVGAVIP-PSHTRGYIGTALRLLER  533 (548)
T ss_dssp             BSHHHHHTTSSSEECC-GGGHHHHHHHHHHHTTT
T ss_pred             CHHHHHhcCCCceeeC-HHHHHHHHHHHHHHHhc
Confidence            5577999999999999 88877777666665543

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=85.77  E-value=0.66  Score=37.91  Aligned_cols=88  Identities=16%  Similarity=0.196  Sum_probs=50.8

Q ss_pred             cccchHHHHHHhh-----cceeeeecCceeeecccccccccCChhHHHHHH-HhhC---HHHHHHHHhcCCCCCHHHHHH
Q psy15240          3 GHAPGAGCQFAMS-----CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMV-HTLG---PRQTELALTSGKMFTSAEALK   73 (155)
Q Consensus         3 G~a~GgG~~la~~-----cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~-~~~g---~~~a~~l~l~g~~~~a~eA~~   73 (155)
                      |.++|||. ++++     +|++++- ++++++       +.++-+.+..+. +.+-   ......--+.-+.-++-.|.+
T Consensus       420 g~~~Ggg~-~am~~~~~~~d~~~aw-p~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~y~~~~~~p~~aa~  490 (531)
T 3n6r_B          420 RKAYGGAY-VVMSSKHLRADFNYAW-PTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASE  490 (531)
T ss_dssp             EEEEHHHH-HHTTCGGGTCSEEEEC-TTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHHHSSSHHHHH
T ss_pred             CCccchhh-hhccCccCCCCeEEEc-CCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHHHHHHhcCHHHHHh
Confidence            66778776 4444     8888887 776554       443334333332 2121   111111112222346667889


Q ss_pred             cCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      .|+||.|++ +.+........++.+..
T Consensus       491 ~~~vD~vId-P~~TR~~l~~~l~~~~~  516 (531)
T 3n6r_B          491 RGFVDEVIQ-PRSTRKRVARAFASLRN  516 (531)
T ss_dssp             HTSSSEECC-GGGHHHHHHHHHHTTTT
T ss_pred             cCccCcccC-HHHHHHHHHHHHHHHhc
Confidence            999999999 99888777666555443

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=84.46  E-value=2.7  Score=34.77  Aligned_cols=37  Identities=19%  Similarity=0.164  Sum_probs=30.8

Q ss_pred             CCCHHHHHHcCccceecCChhHHHHHHHHHHHHHhcCC
Q psy15240         65 MFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIP  102 (155)
Q Consensus        65 ~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~~~  102 (155)
                      ..++--|.+.|+||.|++ +.+.......++....+.|
T Consensus       529 ~~~p~~aA~r~~vD~VId-P~~TR~~l~~~~~~~~~~p  565 (588)
T 3gf3_A          529 KSRPKYCTEKGMVDEIVD-MTEVRPYIQAFTEAAYQNP  565 (588)
T ss_dssp             TTSHHHHHHTTSSSEECC-GGGHHHHHHHHHHHHTTSC
T ss_pred             hCCHHHHHhcCCCCeeeC-HHHHHHHHHHHHHHHHcCC
Confidence            358889999999999999 9999988888777665544

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=82.44  E-value=1.9  Score=35.22  Aligned_cols=88  Identities=14%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             cccchHHHHHHhh-----cceeeeecCceeeecccccccccCChhHHHHHHHh-hC------HHHHHHHH--hcCCCCCH
Q psy15240          3 GHAPGAGCQFAMS-----CEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-LG------PRQTELAL--TSGKMFTS   68 (155)
Q Consensus         3 G~a~GgG~~la~~-----cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~g------~~~a~~l~--l~g~~~~a   68 (155)
                      |.++|||. ++++     .|++++- ++++++       +..+-+.+..+.+. +-      ...-.++.  +.-+.-++
T Consensus       414 g~~~GGa~-~am~~~~~~~d~~~aw-p~a~~~-------Vm~~egaa~il~r~~~~~~~~d~~~~~~~~~~~y~~~~~~p  484 (530)
T 3iav_A          414 RKAFGGAY-VVMGSKHLGADLNLAW-PTAQIA-------VMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNP  484 (530)
T ss_dssp             EEEEHHHH-HHTTCGGGTCSEEEEC-TTCEEE-------SSCHHHHHHHHTSTTTSTTCTTCHHHHHHHHHHHHHHHSSS
T ss_pred             CCcchHHH-HHhcCCCCCCCEEEEc-CCceEe-------cCCHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhcCCH
Confidence            67787665 5554     6888887 776554       44344444333221 11      01111222  22223477


Q ss_pred             HHHHHcCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         69 AEALKVGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        69 ~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      -.|.+.|+||.|++ +.+........+..+..
T Consensus       485 ~~aa~~~~vD~VId-P~~TR~~l~~~l~~~~~  515 (530)
T 3iav_A          485 YTAAERGYVDAVIM-PSDTRRHIVRGLRQLRT  515 (530)
T ss_dssp             HHHHHTTSSSEECC-GGGHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCcccC-HHHHHHHHHHHHHHHhc
Confidence            88899999999999 99988777766665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	1e-12
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-06
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	9e-06
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	0.002

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 1e-12
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G+A G GC+ AM C+     G K   G  E  +G I        +   +G       +
Sbjct: 104 VNGYALGGGCELAMMCDIIYA-GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMV 162

Query: 61  TSGKMFTSAEALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISN 120
            +G   ++ +A + G +  ++   E  +  A     + A        + K  +       
Sbjct: 163 LTGDRISAQDAKQAG-LVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMT 221

Query: 121 LMENKEKDLKNVVDLITSPQVQKGL 145
           L E  + + K       +   ++G+
Sbjct: 222 LTEGNKLEKKLFYSTFATDDRREGM 246

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 5/148 (3%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G A G        C+    +  K  +      +G+I       ++    G   T   L
Sbjct: 115 LNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECL 174

Query: 61  TSGKMFTSAEALKVGLIDE-----EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLRE 115
              K F      + G I +        +E       E    +   +   +    K +L+ 
Sbjct: 175 MFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKS 234

Query: 116 KTISNLMENKEKDLKNVVDLITSPQVQK 143
             I    +    ++   +      +  K
Sbjct: 235 NHIDAFNKANSVEVNESLKYWVDGEPLK 262

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 9e-06
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 84  EEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQK 143
           EE+  + A + +AQ+  IP  AR+LTK M+R+ T S L+  ++ D++N V  I+   +QK
Sbjct: 186 EEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQK 245

Query: 144 GL 145
            L
Sbjct: 246 SL 247

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 1   MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELAL 60
           + G   G G     +C+ R          + E  +G+ A    +  +   +G R     L
Sbjct: 114 IHGGCIGGGVDLISACDIRYCT-QDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNEL 172

Query: 61  TSGKMFTSAE-ALKVGLIDEEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTIS 119
           T       A+ AL  GL+      ++  +  A    A  ++    A + +K+ L      
Sbjct: 173 TFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDH 232

Query: 120 NLMENKEKDLKNVVDLITSPQVQKGL 145
           ++ E+ +      + ++ +  + K +
Sbjct: 233 SVDESLDYMATWNMSMLQTQDIIKSV 258

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.97
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	99.96
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.48
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.46
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.42
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.4
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.38
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.34
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.28
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.25
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.15
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.55
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.5
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.29
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	96.13
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	87.73
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	86.4
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	85.87
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	80.66

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-40  Score=248.93  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=149.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|.+++++++++|+++++++|+++||||+|
T Consensus       105 v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v  183 (258)
T d2fw2a1         105 VNGPAIGLGASILPLCDLVWAN-EKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQV  183 (258)
T ss_dssp             ECSCEETHHHHTGGGSSEEEEE-TTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEE
T ss_pred             ccccccccccccccccccccee-cccceeeccccccccccccccccchhhcCccccchhhccCccccccccccccccccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+++.+++++|++.|+.+++.+|+.++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       184 v~-~~~l~~~a~~~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~  257 (258)
T d2fw2a1         184 FL-TGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE  257 (258)
T ss_dssp             EC-STTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred             cc-ccccccccchhhhhhhhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            99 899999999999999999999999999999999888999999999999999999999999999999999986

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.1e-40  Score=245.81  Aligned_cols=153  Identities=18%  Similarity=0.248  Sum_probs=149.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus       104 v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v  182 (260)
T d1mj3a_         104 VNGYALGGGCELAMMCDIIYAG-EKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI  182 (260)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE
T ss_pred             EcCeEeHHHHHHHHHCCEEEEc-CCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.+++.+++..++.++..+|+.++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       183 ~~-~~~~~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~  256 (260)
T d1mj3a_         183 FP-VETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKAN  256 (260)
T ss_dssp             EC-TTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             ec-ccccccccccccccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            99 899999999999999999999999999999999888999999999999999999999999999999999985

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.2e-39  Score=242.26  Aligned_cols=152  Identities=20%  Similarity=0.155  Sum_probs=144.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|
T Consensus       110 v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~v  188 (263)
T d1wz8a1         110 VEKVAVGAGLALALAADIAVVG-KGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALA  188 (263)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEE
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccchhhhhcccccccchhHHHhcCCcccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++|++.||.+++.+|++++....... +.++.|...+...+.++|.+|++++|++||+|+
T Consensus       189 v~-~~~l~~~a~~~a~~la~~~~~al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~  261 (263)
T d1wz8a1         189 VE-DEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKRPPE  261 (263)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             cc-hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCC
Confidence            99 89999999999999999999999999999998776444 557888889999999999999999999999986

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-39  Score=242.21  Aligned_cols=153  Identities=20%  Similarity=0.298  Sum_probs=145.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..++++++++|+++++++|+++||||+|
T Consensus       106 v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~v  184 (266)
T d1hzda_         106 IDGLALGGGLELALACDIRVAA-SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHV  184 (266)
T ss_dssp             ESEEEETHHHHHHHHSSEEEEE-TTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEE
T ss_pred             cccccccccceeccccceeeec-CCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhcccccccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhH----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEE----AITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~----~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      || .++    +.+.+.+++++++..||.+++.+|+.++.....++++.++.|...+..++.++|.+|++++|++||+|+
T Consensus       185 v~-~~~l~~~~~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~  262 (266)
T d1hzda_         185 LE-QNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPR  262 (266)
T ss_dssp             EC-CCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCC
T ss_pred             cC-hhhhhhHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            99 544    567777788899999999999999999998888999999999999999999999999999999999985

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=9.3e-39  Score=240.37  Aligned_cols=153  Identities=17%  Similarity=0.209  Sum_probs=149.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||.++|+.|+++++.++++++|..++++++++|++++++||+++||||+|
T Consensus       107 v~G~a~GgG~~lal~~D~ria~-~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~v  185 (269)
T d1nzya_         107 INGVAAGGGLGISLASDMAICA-DSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRV  185 (269)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCE
T ss_pred             hhhhcCCCceeeeecccHhhhh-hhhhhcccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCcccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+++.+++++|++.|+.++..+|+.++.....++++.++.|...+...+.++++++++.+|++||+|+
T Consensus       186 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~  259 (269)
T d1nzya_         186 YP-KDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRAD  259 (269)
T ss_dssp             EC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTT
T ss_pred             cc-ccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCC
Confidence            99 999999999999999999999999999999999888999999999999999999999999999999999875

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-38  Score=237.69  Aligned_cols=154  Identities=14%  Similarity=0.204  Sum_probs=146.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCH-HHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGP-RQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~-~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|+.|++++++++++++|. ..+++++++|++++++||+++||||+
T Consensus       114 v~G~a~GgG~~lal~~D~ria~-~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~  192 (275)
T d1dcia_         114 IHGGCIGGGVDLISACDIRYCT-QDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSR  192 (275)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEE-TTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSE
T ss_pred             EeeEeehhhHHHHhhcCchhhc-cCccccchhcccccccccccccccccccccccccccccccccccchhhhccCCCcee
Confidence            6999999999999999999999 999999999999999999999999999995 45678999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      |+++.+.+.+.+.+++.++++.+|.+++.+|+.++.....++++.++.|...+..++.++|.+|++++|++||+||
T Consensus       193 v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk  268 (275)
T d1dcia_         193 VFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSK  268 (275)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGG
T ss_pred             eeehhhhhhhcccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            9995666888999999999999999999999999999888899999999999999999999999999999999986

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.8e-38  Score=234.72  Aligned_cols=152  Identities=18%  Similarity=0.302  Sum_probs=146.2

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||.++|++| ++++++|++++|.++|++++++|+++++++|+++||||+|
T Consensus       101 v~G~a~GgG~~lal~~D~ria~-~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v  178 (253)
T d1uiya_         101 VNGPAVAGGAGLALACDLVVMD-EEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI  178 (253)
T ss_dssp             ECSCEETHHHHHHHTSSEEEEE-TTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEE
T ss_pred             eCeEEehhhHHHHhhhhhhhhh-hhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCccc
Confidence            6999999999999999999999 9999999999999885 5678899999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ .+++.+.+.++++++++.++.++..+|+.++.....++++.+..|...+..++.++|.+|++.+|++||+|+
T Consensus       179 ~~-~~~~~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~  252 (253)
T d1uiya_         179 AP-PGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             EC-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             cc-ccccchhHHHHHHhhcccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            99 899999999999999999999999999999999888999999999999999999999999999999999985

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-37  Score=232.92  Aligned_cols=153  Identities=17%  Similarity=0.175  Sum_probs=141.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||.++|++|++++++++++.+|..++++++++|+.++++||+++||||+|
T Consensus       103 v~G~a~GgG~~lal~cD~ria~-~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~v  181 (261)
T d1ef8a_         103 VEGSVWGGAFEMIMSSDLIIAA-STSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHV  181 (261)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEE-TTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEE
T ss_pred             ccccccchhhhhhhhhhhhhhh-HhHHHhhhhcccccccccccccccccccCccccccccccCceEcHHHHHHcCCccee
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNL--MENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++.+.+.+++++++..+|.++..+|+.++.......  ...++.+...+..++.++|.+|++.+|++||+|+
T Consensus       182 v~-~~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~  257 (261)
T d1ef8a_         182 VE-VEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPN  257 (261)
T ss_dssp             EC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             ee-chhhhhhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCc
Confidence            99 89999999999999999999999999999998876433  3344555566778889999999999999999985

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.6e-37  Score=233.09  Aligned_cols=153  Identities=12%  Similarity=0.174  Sum_probs=140.5

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++++.++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus       137 v~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~v  216 (297)
T d1q52a_         137 VNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAV  216 (297)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEE
T ss_pred             EcceeeeccchhhhhhhccccccccccceeeeeccccccccccccccccccCccceeeccccccccchHhhhhhcccccc
Confidence            69999999999999999999983456899999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLGLYLQSLKKK  155 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~k  155 (155)
                      ++ ++++++.+.++++++++.|+.+++.+|+.++.... .+.+....+.+.+..++.++|.+|++.+|++||+|+
T Consensus       217 v~-~~el~~~~~~~a~~l~~~~~~a~~~~K~~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~  289 (297)
T d1q52a_         217 AE-HAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPD  289 (297)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCC
T ss_pred             Cc-hHHhhHHHHHHhhhhccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCC
Confidence            99 89999999999999999999999999999988654 444445556677788899999999999999999986

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-36  Score=221.32  Aligned_cols=140  Identities=18%  Similarity=0.177  Sum_probs=136.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++++++|++++|..++++++++|+.++++||+++||||+|
T Consensus       105 v~G~a~GgG~~la~~~D~~ia~-~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v  183 (245)
T d2f6qa1         105 VNGPAVGISVTLLGLFDAVYAS-DRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEV  183 (245)
T ss_dssp             ECSCEETHHHHGGGGCSEEEEE-TTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEE
T ss_pred             ECCccccccccchhhhhhhhhh-ccCeEecccccCCCCccccchhhcccccccchhhhhccccccccccccccccccccc
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQ  142 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  142 (155)
                      ++ ++++++++.++++++++.||.+++.+|++++......+++.++.|...+...|.++|.+
T Consensus       184 v~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~  244 (245)
T d2f6qa1         184 FP-DSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECT  244 (245)
T ss_dssp             EC-TTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccC
Confidence            99 89999999999999999999999999999999988899999999999999999999875

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=9.6e-35  Score=216.20  Aligned_cols=144  Identities=44%  Similarity=0.778  Sum_probs=138.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceee--ecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTI--GLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLID   78 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~--~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~   78 (155)
                      |||+|+|||++|+++|||||++ ++++|  ++||+++|++|+++++++|++++|++++++++++|+++++++|+++||||
T Consensus       103 v~G~a~GgG~~lal~~D~~ia~-~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~  181 (249)
T d1sg4a1         103 INGACPAGGCLVALTCDYRILA-DNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVD  181 (249)
T ss_dssp             ECEEBCHHHHHHHTTSSEEEEE-CCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSS
T ss_pred             hcccccccccccccccccceee-ccccccccccccccccccccccccccccccccccccccccccccccHHHHHhhcccc
Confidence            6999999999999999999999 98876  78999999999999999999999999999999999999999999999999


Q ss_pred             eecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHH
Q psy15240         79 EEVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGLG  146 (155)
Q Consensus        79 ~v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  146 (155)
                      +|++ ++++.+.+.++++++++.|+.+++.+|++++......+.+.++.|...+...+.+++.+++|+
T Consensus       182 ~v~~-~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         182 QVVP-EEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             EEEC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             ccCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence            9999 899999999999999999999999999999999888999999999999999999999998874

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=7.7e-35  Score=222.89  Aligned_cols=151  Identities=21%  Similarity=0.245  Sum_probs=135.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|
T Consensus       110 v~G~a~GgG~elal~cD~ria~-~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~v  188 (310)
T d1wdka4         110 INGIALGGGLEMCLAADFRVMA-DSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAV  188 (310)
T ss_dssp             ECSCEETHHHHHHHTSSEEEEE-TTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEE
T ss_pred             ccccccccccccchhhhhhhcc-ccceecccccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEE
Confidence            6999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHH---------------------------------------HHHHHHHHHHHHHHhH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAA---------------------------------------RKLTKLMLREKTISNL  121 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a---------------------------------------~~~~K~~l~~~~~~~~  121 (155)
                      +| ++++.+.+.++++++++.++..                                       ...+.+.++.....++
T Consensus       189 v~-~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pA~~~~l~~v~~~~~~~~  267 (310)
T d1wdka4         189 VT-ADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGR  267 (310)
T ss_dssp             EC-GGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             cc-HHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhhhhhhhccCCChHHHHHHHHHHHHhCCCH
Confidence            99 8999999999999998765321                                       1122234445555678


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy15240        122 MENKEKDLKNVVDLITSPQVQKGLGLYLQSLK  153 (155)
Q Consensus       122 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (155)
                      ++.++.|.+.+.+++.+++.++.+.+|+.||.
T Consensus       268 ~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~  299 (310)
T d1wdka4         268 DKALEVEAAGFAKLAKTSASNCLIGLFLNDQE  299 (310)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999998764

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=3.5e-33  Score=205.50  Aligned_cols=127  Identities=20%  Similarity=0.211  Sum_probs=118.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++|||||++ ++++|++||+++|++|+++ +.+|++++|.+++++++++|++++++||+++||||+|
T Consensus       101 v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~G~~p~~g-~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v  178 (230)
T d2a7ka1         101 VDGYAIGMGFQFALMFDQRLMA-STANFVMPELKHGIGCSVG-AAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV  178 (230)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEE-TTCEEECCGGGGTCCCHHH-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEE
T ss_pred             cccccccccccchhccchhhcc-ccchhhhcccccccccccc-ccccccccccccccccccccccchHHHHHHhhhcccC
Confidence            6999999999999999999999 9999999999999987665 5689999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy15240         81 VTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLK  130 (155)
Q Consensus        81 ~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~  130 (155)
                      ++ ++++.+++.++++++++.||.+++.+|+.+++.....+++.++.+..
T Consensus       179 v~-~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~a  227 (230)
T d2a7ka1         179 VE-SSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKA  227 (230)
T ss_dssp             EC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            99 89999999999999999999999999999999888888877766543

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.1e-32  Score=202.99  Aligned_cols=145  Identities=13%  Similarity=0.126  Sum_probs=123.6

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCcccee
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEE   80 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v   80 (155)
                      |||+|+|||++|+++||||||++++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|
T Consensus       115 v~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v  194 (266)
T d1pjha_         115 LNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKN  194 (266)
T ss_dssp             ECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEE
T ss_pred             hhcccccccccchhccchhhhhhccccccccccccccccccccccccccccccchhhhhhccCCcCCHHHHHHCCCEeEe
Confidence            69999999999999999999973568999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHH-----HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHH
Q psy15240         81 VTSEEEAI-----TRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKDLKNVVDLITSPQVQKGL  145 (155)
Q Consensus        81 ~~~~~~~~-----~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  145 (155)
                      +++++...     +.+.++++.+...++.++..+|++++......+......|.....+.|.+++.++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~f~~~~p~~~f  264 (266)
T d1pjha_         195 FNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRF  264 (266)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             eCchhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCChhHh
Confidence            98432221     224566777888899999999999999888888887777777777776665555544

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.96  E-value=2e-29  Score=187.31  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=115.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeee-cccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIG-LNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~-~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      |||+|.| |++|+++||+||++ ++++|. +||.++|++|+++++++|++++|..++++++++|++++++||+++||||+
T Consensus       112 v~g~~~G-G~~l~l~~D~ria~-~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~  189 (249)
T d1szoa_         112 VNGPVTN-APEIPVMSDIVLAA-ESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNE  189 (249)
T ss_dssp             ECSCBCS-STHHHHTSSEEEEE-TTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSE
T ss_pred             ecccccc-cccccccccccccc-CCcEEEEeeccccccccccccccccccccCccceeeecccCCCCCHHHHHHhCCcCc
Confidence            5898855 77899999999999 999885 79999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy15240         80 EVTSEEEAITRAETFLAQYATIPGAARKLTKLMLREKTISNLMENKEKD  128 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e  128 (155)
                      |++ ++++.+++.++++++++.|+.+++.+|+.+++.....++..++.+
T Consensus       190 vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~e~~l~~~  237 (249)
T d1szoa_         190 VLS-EQELLPRAWELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLG  237 (249)
T ss_dssp             EEC-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             ccC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999 899999999999999999999999999999988776666665543

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=4.7e-05  Score=52.06  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=54.0

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChhH---------------HHHHHHhhC--HHHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLG--PRQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g--~~~a~~l~l~   62 (155)
                      .|.|.+.|.-+++++|  .|++. ++++|-+.+...|......-               ...+.++.|  .......+..
T Consensus        79 ~G~aaS~a~~il~ag~k~~R~~~-~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~  157 (179)
T d2cbya1          79 MGMAASMGEFLLAAGTKGKRYAL-PHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDR  157 (179)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEEC-TTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHcCCCCceEEC-CchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Confidence            4889999999999999  79999 99999888876554321110               111222222  2344555666


Q ss_pred             CCCCCHHHHHHcCccceecC
Q psy15240         63 GKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~   82 (155)
                      -.-++++||+++||||+|+.
T Consensus       158 d~~l~a~EA~~~GliDeIi~  177 (179)
T d2cbya1         158 DRWFTAAEALEYGFVDHIIT  177 (179)
T ss_dssp             TCEEEHHHHHHHTSCSEECS
T ss_pred             CceecHHHHHHcCCCcEEec
Confidence            67799999999999999987

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.46  E-value=0.00015  Score=50.13  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChhH---------------HHHHHHhhC--HHHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLG--PRQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g--~~~a~~l~l~   62 (155)
                      .|.|.+.|.-|++++|  .|++. ++++|-+.+...|......-               ...+....|  .....+.+-.
T Consensus        92 ~G~aaS~a~~il~aG~~g~R~~~-pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~~r  170 (193)
T d1tg6a1          92 VGQAASMGSLLLAAGTPGMRHSL-PNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMER  170 (193)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEEC-TTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSS
T ss_pred             ccchHHHHHHHhhcCccCccccC-cccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence            4788999999999999  59999 99999999988776522111               111222222  2344455544


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q psy15240         63 GKMFTSAEALKVGLIDEEVTS   83 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~~   83 (155)
                      -.-++++||+++||||+|+.+
T Consensus       171 D~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         171 DRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             CEEECHHHHHHHTSCSEECSS
T ss_pred             CccCCHHHHHHcCCCCEEccC
Confidence            455999999999999999873

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.42  E-value=0.00014  Score=50.13  Aligned_cols=80  Identities=20%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             CcccchHHHHHHhh--cceeeeecCceeeecccccccccCChhH-----------------HHHHHHhhC--HHHHHHHH
Q psy15240          2 KGHAPGAGCQFAMS--CEYRIMVGPKYTIGLNETKMGIIAPFWF-----------------VDTMVHTLG--PRQTELAL   60 (155)
Q Consensus         2 ~G~a~GgG~~la~~--cD~~ia~~~~a~~~~~e~~~Gl~~~~~~-----------------~~~l~~~~g--~~~a~~l~   60 (155)
                      .|.|.+.|.-|+++  ||.|++. ++++|-+.....|.......                 ...+....|  .....+.+
T Consensus        90 ~G~aaS~as~il~aG~~g~R~~~-pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~~  168 (192)
T d1y7oa1          90 MGMAASMGTVIASSGAKGKRFML-PNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADA  168 (192)
T ss_dssp             EEEEETHHHHHHTTSCTTCEEEC-TTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             ccccCCccceeeeecCCCccccc-hHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence            47888888777665  6799999 99999999988776522110                 011222222  34445556


Q ss_pred             hcCCCCCHHHHHHcCccceecC
Q psy15240         61 TSGKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        61 l~g~~~~a~eA~~~Glv~~v~~   82 (155)
                      -.-.-++++||+++||||+|++
T Consensus       169 ~rd~~lsa~EAleyGliD~Ii~  190 (192)
T d1y7oa1         169 ERDNWMSAQETLEYGFIDEIMA  190 (192)
T ss_dssp             HSCCCBCHHHHHHHTSCSEECC
T ss_pred             cCCceecHHHHHHcCCCcEEec
Confidence            6667799999999999999987

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=5e-05  Score=52.03  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=56.1

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChhH---------------HHHHHHhhC--HHHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFWF---------------VDTMVHTLG--PRQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~~---------------~~~l~~~~g--~~~a~~l~l~   62 (155)
                      .|.|...|.-|+++||  .|++. ++++|-+.+...|......-               ...+.+..|  .....+++..
T Consensus        82 ~G~aaS~a~~I~~ag~~~~R~~~-~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~  160 (183)
T d1yg6a1          82 MGQAASMGAFLLTAGAKGKRFCL-PNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTER  160 (183)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEEC-TTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSS
T ss_pred             EEEeHHHHHHHHHcCCCCceeeC-CCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhcc
Confidence            4788899999999998  79999 99999998887665421111               111222222  2344455544


Q ss_pred             CCCCCHHHHHHcCccceecC
Q psy15240         63 GKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~   82 (155)
                      -.-++++||+++||||+|++
T Consensus       161 d~~lta~EAl~~GliD~Ii~  180 (183)
T d1yg6a1         161 DRFLSAPEAVEYGLVDSILT  180 (183)
T ss_dssp             CEEEEHHHHHHHTSSSEECC
T ss_pred             CccccHHHHHHcCCCcEEec
Confidence            45589999999999999997

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.00015  Score=52.16  Aligned_cols=73  Identities=21%  Similarity=0.276  Sum_probs=50.4

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------HH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------LK   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~~   73 (155)
                      |.|+|+||+.-....||++|+.++.+       .+++.+|..             . +. .+|+.++.++.       ..
T Consensus       165 v~G~~~gG~a~~~~~~d~~im~~~~a-------~i~~aGp~v-------------v-~~-~~ge~~~~eelGga~~h~~~  222 (251)
T d1vrga1         165 IAGPCAGGAVYSPALTDFIVMVDQTA-------RMFITGPNV-------------I-KA-VTGEEISQEDLGGAMVHNQK  222 (251)
T ss_dssp             EEEEEBGGGGHHHHHSSEEEEETTTC-------BCBSSCHHH-------------H-HH-HHCCCCCHHHHHBHHHHHHT
T ss_pred             EccCccccceehhhhCceEEEEccce-------eEEecCchh-------------h-hh-hcCCcCChHHccchhhhhhc
Confidence            46999999999999999999873444       344432211             1 11 36788998775       45


Q ss_pred             cCccceecCChhHHHHHHHHHH
Q psy15240         74 VGLIDEEVTSEEEAITRAETFL   95 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a   95 (155)
                      .|++|.+++|+++..+.+.+++
T Consensus       223 sG~~D~v~~de~~a~~~ir~lL  244 (251)
T d1vrga1         223 SGNAHFLADNDEKAMSLVRTLL  244 (251)
T ss_dssp             SCCCSEEESSHHHHHHHHHHHH
T ss_pred             cccceEEECCHHHHHHHHHHHH
Confidence            7999999997666665555553

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.34  E-value=0.00028  Score=48.55  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=56.3

Q ss_pred             CcccchHHHHHHhhcc--eeeeecCceeeecccccccccCChh---------------HHHHHHHhhCH--HHHHHHHhc
Q psy15240          2 KGHAPGAGCQFAMSCE--YRIMVGPKYTIGLNETKMGIIAPFW---------------FVDTMVHTLGP--RQTELALTS   62 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD--~~ia~~~~a~~~~~e~~~Gl~~~~~---------------~~~~l~~~~g~--~~a~~l~l~   62 (155)
                      .|.|.+.|.-+++++|  .|++. ++++|-+.....|......               ....+....|.  ....+.+-.
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~-pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~  161 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSL-PNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  161 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEEC-TTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             eccccchhHHHHHhCCCCccccC-CCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccC
Confidence            4788889999999988  59999 9999999998877542111               01123333333  233444445


Q ss_pred             CCCCCHHHHHHcCccceecC
Q psy15240         63 GKMFTSAEALKVGLIDEEVT   82 (155)
Q Consensus        63 g~~~~a~eA~~~Glv~~v~~   82 (155)
                      -.-++|+||+++||||+|++
T Consensus       162 d~~l~a~EAl~~GliD~Ii~  181 (190)
T d2f6ia1         162 DYYMNALEAKQYGIIDEVIE  181 (190)
T ss_dssp             TCEECHHHHHHHTSCSEECC
T ss_pred             CeeecHHHHHHcCCCcEEcc
Confidence            55699999999999999997

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=0.00027  Score=50.92  Aligned_cols=76  Identities=22%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------HH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------LK   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~~   73 (155)
                      |.|+|.||+.-....||++|..++++       .+++..|..             ..  ..+|+.++.++.       .+
T Consensus       168 v~G~~~gG~a~~~~~~d~~vm~~~~a-------~i~~aGP~v-------------V~--~~~ge~~~~eeLGga~~h~~~  225 (258)
T d2a7sa1         168 IMGAAAGGHVYSPALTDFVIMVDQTS-------QMFITGPDV-------------IK--TVTGEEVTMEELGGAHTHMAK  225 (258)
T ss_dssp             ECSCCBSGGGHHHHHSSEEEEEBTTB-------BCBSSCHHH-------------HH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EecCcccHHHHHHHhccceEeecCce-------EEEccChhH-------------HH--HhcCCccChhhccCHhHhhhh
Confidence            46999999999999999988873554       444442222             11  236788887753       46


Q ss_pred             cCccceecCChhHHHHHHHHHHHHH
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQY   98 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l   98 (155)
                      .|++|.+++|.++..+.+.+++.-|
T Consensus       226 sG~~D~v~~de~~a~~~~r~~Ls~l  250 (258)
T d2a7sa1         226 SGTAHYAASGEQDAFDYVRELLSYL  250 (258)
T ss_dssp             SCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             ccccceEeCCHHHHHHHHHHHHHhC
Confidence            7999999997777777776665543

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.25  E-value=0.00042  Score=49.74  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=46.9

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHH-------HHH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAE-------ALK   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~e-------A~~   73 (155)
                      |.|+|+||+.-...+||++|++ +++.+.+       ..|...             .  ..+|+.++.+|       +..
T Consensus       168 v~Gp~~GG~a~~~~~~d~vi~~-~~a~i~~-------aGP~vV-------------e--~~~ge~~~~eelGga~~h~~~  224 (253)
T d1on3a1         168 IAGPCAGGASYSPALTDFIIMT-KKAHMFI-------TGPQVI-------------K--SVTGEDVTADELGGAEAHMAI  224 (253)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEE-TTCEEES-------SCHHHH-------------H--HHHCCCCCHHHHHSHHHHHHT
T ss_pred             EecCcccceeeccchhhheecc-ccceEEe-------cCcchh-------------h--hhhCCcCChHhccCHHHhhhc
Confidence            4699999999999999999999 7664443       311111             1  12467777653       345


Q ss_pred             cCccceecCChhHHHHHHHHH
Q psy15240         74 VGLIDEEVTSEEEAITRAETF   94 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~   94 (155)
                      .|+||.|++|+++..+.++++
T Consensus       225 sG~iD~v~~~e~~a~~~~r~l  245 (253)
T d1on3a1         225 SGNIHFVAEDDDAAELIAKKL  245 (253)
T ss_dssp             TCCCSEEESSHHHHHHHHHHH
T ss_pred             cccceEEECCHHHHHHHHHHH
Confidence            799999999655544444433

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.15  E-value=0.00035  Score=50.31  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH-------HH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA-------LK   73 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA-------~~   73 (155)
                      |.|+|+||+.-....||++|..+++++       +|+..|...             .  ..+|+.++.+|+       ..
T Consensus       167 v~G~~~gG~a~~~~~~~~vim~~~~a~-------i~~aGP~vv-------------~--~~~ge~i~~eelgga~~h~~~  224 (258)
T d1xnya1         167 VVGPCAGGAVYSPAITDFTVMVDQTSH-------MFITGPDVI-------------K--TVTGEDVGFEELGGARTHNST  224 (258)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEETTTCE-------EESSCHHHH-------------H--HHHCCCCCHHHHHBHHHHHHT
T ss_pred             EcCCcChhHHHHHHhccchhhcccceE-------EEecCHHHH-------------H--HHhcCccChHHhccHHHHHhc
Confidence            469999999998999999887734543       444422111             1  236788888774       45


Q ss_pred             cCccceecCChhHHHHHHHHHHHHH
Q psy15240         74 VGLIDEEVTSEEEAITRAETFLAQY   98 (155)
Q Consensus        74 ~Glv~~v~~~~~~~~~~~~~~a~~l   98 (155)
                      -|++|.+++|+++..+.+.+++.-|
T Consensus       225 sG~~d~v~~de~ea~~~~r~~Ls~l  249 (258)
T d1xnya1         225 SGVAHHMAGDEKDAVEYVKQLLSYL  249 (258)
T ss_dssp             SSCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             CCeeEEEeCCHHHHHHHHHHHHHhc
Confidence            6999999997777777777766554

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0015  Score=48.27  Aligned_cols=70  Identities=11%  Similarity=-0.062  Sum_probs=50.8

Q ss_pred             CcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccceec
Q psy15240          2 KGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDEEV   81 (155)
Q Consensus         2 ~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~   81 (155)
                      -|-+.|||.--...+|.+++- ++++++.      +.|.++.+..+...--...+.+    ...+++++.+++|+||+|+
T Consensus       197 ~g~g~~gga~a~~~~d~v~m~-~~a~~sv------ispEg~AsILwkd~~~a~eaAe----alklta~dL~~lgiIDeII  265 (316)
T d2f9ya1         197 IGEGGSGGALAIGVGDKVNML-QYSTYSV------ISPEGCASILWKSADKAPLAAE----AMGIIRPRLKELKLIDSII  265 (316)
T ss_dssp             EEEEEHHHHHTTCCCSEEEEC-TTCEEES------SCHHHHHHHHSSCSTTHHHHHH----HHTCSHHHHHTTTSCSCCC
T ss_pred             EhhhhchhhhhhhhhhHHHHH-hhhHHhh------ccchhhhhHhhccchhhcchHH----HHhhhhHHHHHcCchhhcc
Confidence            366788888777889999999 9999983      3555555554443333333333    3458999999999999999


Q ss_pred             C
Q psy15240         82 T   82 (155)
Q Consensus        82 ~   82 (155)
                      +
T Consensus       266 ~  266 (316)
T d2f9ya1         266 P  266 (316)
T ss_dssp             C
T ss_pred             c
Confidence            7

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0033  Score=45.09  Aligned_cols=83  Identities=24%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             CCcccchHHH-HHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHHHHcCccce
Q psy15240          1 MKGHAPGAGC-QFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEALKVGLIDE   79 (155)
Q Consensus         1 v~G~a~GgG~-~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~   79 (155)
                      +.|+|+||+. .+++++|++++. +++.+++       ..|...    ....|     +- +.-+.-+++...+.|+||.
T Consensus       176 ~~g~~~GG~aa~~~~~~d~i~~~-~~s~i~~-------aGP~vv----e~~~g-----e~-~~e~~g~a~~~~~~G~iD~  237 (263)
T d2f9yb1         176 LTDPTMGGVSASFAMLGDLNIAE-PKALIGF-------AGPRVI----EQTVR-----EK-LPPGFQRSEFLIEKGAIDM  237 (263)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEEC-TTCBEES-------SCHHHH----HHHHT-----SC-CCTTTTBHHHHGGGTCCSE
T ss_pred             ecCCcchHHHhhhhhcCceEeee-cceeeec-------cCHHHH----hhhcC-----Cc-CChhhccHHHHHhCCCCCE
Confidence            3589999986 477788888887 7765443       311111    11111     00 1122334555667899999


Q ss_pred             ecCChhHHHHHHHHHHHHHhcCC
Q psy15240         80 EVTSEEEAITRAETFLAQYATIP  102 (155)
Q Consensus        80 v~~~~~~~~~~~~~~a~~l~~~~  102 (155)
                      |++ +++.-..+.++..-|...|
T Consensus       238 vv~-~ee~~~~l~~~l~~L~~~p  259 (263)
T d2f9yb1         238 IVR-RPEMRLKLASILAKLMNLP  259 (263)
T ss_dssp             ECC-HHHHHHHHHHHHHHHTTCC
T ss_pred             EEC-CHHHHHHHHHHHHHHhhCC
Confidence            999 6776666666666665543

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.29  E-value=0.0029  Score=46.04  Aligned_cols=92  Identities=13%  Similarity=0.157  Sum_probs=50.3

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccc--cccCChhHHHHHHHhhCHHHHHHHHhcCCCCCHHHH--HHcCc
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKM--GIIAPFWFVDTMVHTLGPRQTELALTSGKMFTSAEA--LKVGL   76 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~--Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA--~~~Gl   76 (155)
                      |-|+|+|||.-.+++||++++. +++.+.+.-..+  +..+...........+......  -.+.+.+-+.+.  ..-|+
T Consensus       187 v~G~~~gGgAy~~~~~~~i~~~-~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge--~~~~eeLGGa~~H~~~sG~  263 (287)
T d1pixa2         187 IYGTNPAGGGYHSISPTVIIAH-EKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDR--TGKTEPPGAVDIHYTETGF  263 (287)
T ss_dssp             ECSEEETHHHHHHHSSSEEEEE-TTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHT--TCCCCCSSBHHHHTTTSCC
T ss_pred             ecCCccccceeccccceeEEec-CCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhcc--cccccccccHHHhhhhccc
Confidence            4699999998888888888888 888776644332  2222222111111111110000  013344444443  35699


Q ss_pred             cceecCChhHHHHHHHHHH
Q psy15240         77 IDEEVTSEEEAITRAETFL   95 (155)
Q Consensus        77 v~~v~~~~~~~~~~~~~~a   95 (155)
                      +|.+++|+++..+.+++++
T Consensus       264 ~d~v~~~e~~ai~~~r~~l  282 (287)
T d1pixa2         264 MREVYASEEGVLEGIKKYV  282 (287)
T ss_dssp             SCEEESSHHHHHHHHHHHH
T ss_pred             ceeecCCHHHHHHHHHHHH
Confidence            9999997666555555443

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0081  Score=44.41  Aligned_cols=72  Identities=10%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             CCcccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHhhCHHHHHHHHhcCCCC--CH------HHHH
Q psy15240          1 MKGHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHTLGPRQTELALTSGKMF--TS------AEAL   72 (155)
Q Consensus         1 v~G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~~g~~~a~~l~l~g~~~--~a------~eA~   72 (155)
                      |.|+|+|+|.-++..||++|.. +++.+.       +..+    ..+-          . .+|+.+  |.      +-..
T Consensus       247 v~G~~vG~gAyl~~L~d~vIm~-~~s~i~-------ltGp----~~l~----------~-~lG~eVy~s~~eLGG~~i~~  303 (333)
T d1uyra1         247 VTCRSVGIGAYLVRLGQRAIQV-EGQPII-------LTGA----PAIN----------K-MLGREVYTSNLQLGGTQIMY  303 (333)
T ss_dssp             ESSCEETHHHHHHHHTCCEEEE-TTCCEE-------SSCH----HHHH----------H-HSSSCCCSCTHHHHSHHHHH
T ss_pred             EeCCccccceeecccccEEEEe-CCceEE-------eeCH----HHHH----------H-hcCccccCChhHhCCHhHHh
Confidence            5799999999999999999999 776443       3211    1111          1 235544  32      2335


Q ss_pred             HcCccceecCChhHHHHHHHHHH
Q psy15240         73 KVGLIDEEVTSEEEAITRAETFL   95 (155)
Q Consensus        73 ~~Glv~~v~~~~~~~~~~~~~~a   95 (155)
                      +.|++|-+++|+++..+.+.+|+
T Consensus       304 ~nGv~h~~a~dd~eai~~i~~~L  326 (333)
T d1uyra1         304 NNGVSHLTAVDDLAGVEKIVEWM  326 (333)
T ss_dssp             HHTSSSEEESSHHHHHHHHHHHH
T ss_pred             hCCCceEEeCCHHHHHHHHHHHH
Confidence            68999999997666666665553

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=87.73  E-value=0.7  Score=32.51  Aligned_cols=33  Identities=15%  Similarity=0.036  Sum_probs=26.0

Q ss_pred             CCHHHHHHcCccceecCChhHHHHHHHHHHHHHh
Q psy15240         66 FTSAEALKVGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        66 ~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                      -++-.+.+.|++|+|++ +.+........++.+.
T Consensus       216 ~~~~~aa~~g~iD~VId-P~dTR~~L~~~Le~l~  248 (264)
T d1vrga2         216 ANPYIAASRGYVDMVID-PRETRKYIMRALEVCE  248 (264)
T ss_dssp             SSHHHHHHTTSSSEECC-GGGHHHHHHHHHHHHT
T ss_pred             cCHHHHHHcCCCCeeEC-HHHHHHHHHHHHHHHh
Confidence            36778889999999999 9988777666665543

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.40  E-value=0.52  Score=33.30  Aligned_cols=33  Identities=15%  Similarity=0.091  Sum_probs=25.3

Q ss_pred             CCHHHHHHcCccceecCChhHHHHHHHHHHHHHh
Q psy15240         66 FTSAEALKVGLIDEEVTSEEEAITRAETFLAQYA   99 (155)
Q Consensus        66 ~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~   99 (155)
                      -++-.+.+.|++|.|++ +.+..+.....++-+.
T Consensus       223 ~~p~~aa~~g~iD~VId-P~dTR~~L~~~L~~~~  255 (271)
T d2a7sa2         223 VNPYVAAERGYVDAVIP-PSHTRGYIGTALRLLE  255 (271)
T ss_dssp             SBSHHHHHHTSSSEECC-GGGHHHHHHHHHHHTT
T ss_pred             cCHHHHHHcCCCCeeEC-HHHHHHHHHHHHHHHH
Confidence            46678888999999999 9888777666555443

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=85.87  E-value=0.76  Score=32.33  Aligned_cols=93  Identities=11%  Similarity=0.115  Sum_probs=49.8

Q ss_pred             cccchHHHHHHhhcceeeeecCceeeecccccccccCChhHHHHHHHh-hC---HHHH--HHHH--hcCCCCCHHHHHHc
Q psy15240          3 GHAPGAGCQFAMSCEYRIMVGPKYTIGLNETKMGIIAPFWFVDTMVHT-LG---PRQT--ELAL--TSGKMFTSAEALKV   74 (155)
Q Consensus         3 G~a~GgG~~la~~cD~~ia~~~~a~~~~~e~~~Gl~~~~~~~~~l~~~-~g---~~~a--~~l~--l~g~~~~a~eA~~~   74 (155)
                      |.++|+|..-.+..++   . ++..|..|-.++|..++-++...+.+. +.   ....  .+.+  +..+.-++-.+.+.
T Consensus       149 rkayG~g~~am~g~~~---~-~d~~~aWP~A~~~vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~  224 (264)
T d1on3a2         149 RKAYGGSYLAMCNRDL---G-ADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAAR  224 (264)
T ss_dssp             EEEEHHHHHTTTCGGG---T-CSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHT
T ss_pred             ccccCccccccccccC---C-hhheeeHHhhHhhhccHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhcCHHHHHHc
Confidence            5677876532222111   1 344455555666766555544433221 11   0000  1111  11223456788899


Q ss_pred             CccceecCChhHHHHHHHHHHHHHhc
Q psy15240         75 GLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        75 Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      |.||+|++ +.+........++.+..
T Consensus       225 g~iD~VId-P~eTR~~L~~aLe~~~~  249 (264)
T d1on3a2         225 GQVDDVID-PADTRRKIASALEMYAT  249 (264)
T ss_dssp             TSSSEECC-GGGHHHHHHHHHHHGGG
T ss_pred             CCCCeeEC-HHHHHHHHHHHHHHHhc
Confidence            99999999 99988777776666544

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=80.66  E-value=1.4  Score=30.84  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=26.8

Q ss_pred             CCHHHHHHcCccceecCChhHHHHHHHHHHHHHhc
Q psy15240         66 FTSAEALKVGLIDEEVTSEEEAITRAETFLAQYAT  100 (155)
Q Consensus        66 ~~a~eA~~~Glv~~v~~~~~~~~~~~~~~a~~l~~  100 (155)
                      .++-.+...|.+|.|++ +.+........++.+..
T Consensus       215 ~~p~~aA~~g~iD~VId-P~dTR~~L~~~L~~l~~  248 (263)
T d1xnya2         215 LNPYTAAERGYVDAVIM-PSDTRRHIVRGLRQLRT  248 (263)
T ss_dssp             SSSHHHHHHTSSSEECC-GGGHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHcccCCcccC-HHHHHHHHHHHHHHHhc
Confidence            45667889999999999 99988777776666643