Psyllid ID: psy15243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MDGRMSYSKALMILILIYCYVipwamfpylekwsrfvpegyltsctfdyltpteSIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLrsgqkegqsSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ
Flexible Loop (DISEMBL)
MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVEslrsgqkegqssaEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ
Low Complexity Region (SEG)
MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ
Disordered region (IsUnstruct)
*******SKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSH****************************VRIAKTAITLCALFVASWTPYAVVALTGAF***
Disordered Region (DISOPRED)
******YSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEK****************************IAKTAITLCALFVASWTPYAVVALTGAFGD*
Disordered Region (DISEMBL)
MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAK******************EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ
Disordered Region (DISPRO)
*DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSG****QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
O61303	371	Opsin, ultraviolet-sensit	yes	N/A	1.0	0.404	0.58	1e-49
P28680	382	Opsin Rh3 OS=Drosophila p	yes	N/A	1.0	0.392	0.593	7e-49
P04950	383	Opsin Rh3 OS=Drosophila m	yes	N/A	1.0	0.391	0.593	9e-49
O02465	377	Opsin-2 OS=Manduca sexta	N/A	N/A	1.0	0.397	0.586	4e-48
P17646	383	Opsin Rh4 OS=Drosophila v	N/A	N/A	1.0	0.391	0.58	2e-47
P08255	378	Opsin Rh4 OS=Drosophila m	no	N/A	1.0	0.396	0.566	3e-46
P29404	380	Opsin Rh4 OS=Drosophila p	no	N/A	1.0	0.394	0.56	4e-46
O96107	384	Opsin-3 OS=Manduca sexta	N/A	N/A	1.0	0.390	0.466	2e-38
P91657	382	Opsin Rh5 OS=Drosophila m	no	N/A	1.0	0.392	0.453	2e-36
Q26495	380	Opsin-2 OS=Schistocerca g	N/A	N/A	1.0	0.394	0.466	3e-36

>sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive OS=Apis mellifera GN=UVOP PE=1 SV=1

 Score =  195 bits (495), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 114/150 (76%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DG++S  + ++ ++LI+ Y IPWA+ P +  W RFVPEG+LTSC+FDYLT T  IR +V
Sbjct: 153 LDGKLSRGQVILFIVLIWTYTIPWALMPVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFV 212

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   YCIPM +II +YSQIV HV +HEKALREQAKKMNV+SLRS       SAE+RI
Sbjct: 213 ATIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTSSQSAEIRI 272

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C L+V SWTPY V+++ GAFG++
Sbjct: 273 AKAAITICFLYVLSWTPYGVMSMIGAFGNK 302

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.
Apis mellifera (taxid: 7460)

>sp|P28680|OPS3_DROPS Opsin Rh3 OS=Drosophila pseudoobscura pseudoobscura GN=Rh3 PE=1 SV=3

 Score =  192 bits (488), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 111/150 (74%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           M+G+M++ KA+ ++I IY Y  PW +  Y E W RFVPEGYLTSCTFDYLT     R +V
Sbjct: 162 MEGKMTHGKAIAMIIFIYLYATPWVVACYTESWGRFVPEGYLTSCTFDYLTDNFDTRLFV 221

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   +  P  MI  +YSQIVGHVFSHEKALR+QAKKMNV+SLRS   + + +AE+RI
Sbjct: 222 ACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDSLRSNVDKSKEAAEIRI 281

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LF ASWTPY V++L GAFGD+
Sbjct: 282 AKAAITICFLFFASWTPYGVMSLIGAFGDK 311

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P04950|OPS3_DROME Opsin Rh3 OS=Drosophila melanogaster GN=Rh3 PE=1 SV=1

 Score =  192 bits (487), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 110/150 (73%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           M+G+M++ KA+ ++I IY Y  PW +  Y E W RFVPEGYLTSCTFDYLT     R +V
Sbjct: 163 MEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVPEGYLTSCTFDYLTDNFDTRLFV 222

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   +  P  MI  +YSQIVGHVFSHEKALR+QAKKMNVESLRS   + + +AE+RI
Sbjct: 223 ACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRI 282

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LF  SWTPY V++L GAFGD+
Sbjct: 283 AKAAITICFLFFCSWTPYGVMSLIGAFGDK 312

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|O02465|OPS2_MANSE Opsin-2 OS=Manduca sexta GN=OP2 PE=2 SV=2

 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/150 (58%), Positives = 110/150 (73%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DGR+S  K L+++  ++ Y  PWA+ P L+ W R+VPEGYLTSC+FDYLT T   + +V
Sbjct: 158 LDGRLSEGKVLLMVAFVWIYSTPWALLPLLKIWGRYVPEGYLTSCSFDYLTNTFDTKLFV 217

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   Y  PM +II FYS IV  VF+HE ALREQAKKMNVESLR+ Q     SAE+RI
Sbjct: 218 ACIFTCSYVFPMSLIIYFYSGIVKQVFAHEAALREQAKKMNVESLRANQGGSSESAEIRI 277

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK A+T+C LFVASWTPY V+AL GAFG+Q
Sbjct: 278 AKAALTVCFLFVASWTPYGVMALIGAFGNQ 307

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Manduca sexta (taxid: 7130)

>sp|P17646|OPS4_DROVI Opsin Rh4 OS=Drosophila virilis GN=Rh4 PE=3 SV=2

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 111/150 (74%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           M+  M+++KA+++ ++I+ Y  PW + P  + W RFVPEGYLTSCTFDYLT     R +V
Sbjct: 163 MNRNMTFTKAIIMNVIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCTFDYLTDNFDTRLFV 222

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   +  P  MII +YSQIVGHVFSHEKALREQAKKMNVESLRS   + + +AE+RI
Sbjct: 223 GTIFFFSFVCPTLMIIYYYSQIVGHVFSHEKALREQAKKMNVESLRSNVDKSKDTAEIRI 282

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LF  SWTPY V++L GAFGD+
Sbjct: 283 AKAAITICFLFFVSWTPYGVMSLIGAFGDK 312

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila virilis (taxid: 7244)

>sp|P08255|OPS4_DROME Opsin Rh4 OS=Drosophila melanogaster GN=Rh4 PE=1 SV=2

 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 111/150 (74%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           M+  M+++KA+++ I+I+ Y  PW + P  + W RFVPEGYLTSC+FDYL+     R +V
Sbjct: 159 MNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNFDTRLFV 218

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   +  P  MI+ +YSQIVGHVFSHEKALREQAKKMNVESLRS   + + +AE+RI
Sbjct: 219 GTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNVDKSKETAEIRI 278

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LF  SWTPY V++L GAFGD+
Sbjct: 279 AKAAITICFLFFVSWTPYGVMSLIGAFGDK 308

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|P29404|OPS4_DROPS Opsin Rh4 OS=Drosophila pseudoobscura pseudoobscura GN=Rh4 PE=1 SV=2

 Score =  183 bits (464), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 111/150 (74%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           M+  M+++KA+++ I+I+ Y  PW + P  + W RFVPEGYLTSC+FDYL+     R +V
Sbjct: 160 MNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNFDTRLFV 219

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   +  P  MI+ +YSQIVGHVF+HEKALREQAKKMNVESLRS   + + +AE+RI
Sbjct: 220 GTIFFFSFVCPTLMILYYYSQIVGHVFNHEKALREQAKKMNVESLRSNVDKSKETAEIRI 279

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LF  SWTPY V++L GAFGD+
Sbjct: 280 AKAAITICFLFFVSWTPYGVMSLIGAFGDK 309

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|O96107|OPS3_MANSE Opsin-3 OS=Manduca sexta GN=OP3 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 103/150 (68%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DGR++  +A +++   + + +P+ + P    W RFVPEG+LT+C+FDY T  +    +V
Sbjct: 163 LDGRINTVQAGLLIAFTWFWALPFTILPAFRIWGRFVPEGFLTTCSFDYFTEDQDTEVFV 222

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F+  YCIPM +I  FYSQ+ G V  HE+ L+EQAKKMNV+SL S +++   S E+RI
Sbjct: 223 ACIFVWSYCIPMALICYFYSQLFGAVRLHERMLQEQAKKMNVKSLASNKEDNSRSVEIRI 282

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK A T+  LF+ +WTPYA V +TGAFGD+
Sbjct: 283 AKVAFTIFFLFICAWTPYAFVTMTGAFGDR 312

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Manduca sexta (taxid: 7130)

>sp|P91657|OPS5_DROME Opsin Rh5 OS=Drosophila melanogaster GN=Rh5 PE=2 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/150 (45%), Positives = 102/150 (68%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DGR+SY + +++++  + +  P+++ P  + W R+ PEG+LT+C+FDYLT T+  R +V
Sbjct: 157 IDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFV 216

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F+  Y IPM MI+  Y ++  HV  HEK L EQAKKMNV+SL +       S E+RI
Sbjct: 217 RTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRI 276

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK A+ +  LF+ +WTPY+VVAL G FG+Q
Sbjct: 277 AKAALIIYMLFILAWTPYSVVALIGCFGEQ 306

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|Q26495|OPS2_SCHGR Opsin-2 OS=Schistocerca gregaria GN=Lo2 PE=2 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 102/150 (68%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DGR++  + L ++   + + +P+ + P L  WSRF  EG+LT+C+FDYLT  E  + +V
Sbjct: 158 IDGRLTQGQVLALIAGTWVWTLPFTLMPLLRIWSRFTAEGFLTTCSFDYLTDDEDTKVFV 217

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   Y  P+ +I  FY +++G V  HEK LR+QAKKMNV+SL+S       SAE+RI
Sbjct: 218 GCIFAWSYAFPLCLICCFYYRLIGAVREHEKMLRDQAKKMNVKSLQSNADTEAQSAEIRI 277

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK A+T+  LF+ SWTPYAVVA+ GAFG++
Sbjct: 278 AKVALTIFFLFLCSWTPYAVVAMIGAFGNR 307

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Schistocerca gregaria (taxid: 7010)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
193690641	371	PREDICTED: opsin, ultraviolet-sensitive-	0.993	0.401	0.704	3e-57
10441608	371	UV-wavelength like opsin [Megoura viciae	0.993	0.401	0.704	3e-57
328721769	377	PREDICTED: opsin, ultraviolet-sensitive-	0.993	0.395	0.671	1e-56
345482381	377	PREDICTED: opsin, ultraviolet-sensitive-	1.0	0.397	0.626	2e-52
307212281	369	Opsin, ultraviolet-sensitive [Harpegnath	1.0	0.406	0.606	1e-50
170047283	379	ultraviolet-sensitive opsin [Culex quinq	0.993	0.393	0.630	2e-50
307187719	358	Opsin, ultraviolet-sensitive [Camponotus	1.0	0.418	0.6	3e-50
2935336	369	short wavelength-sensitive opsin [Campon	1.0	0.406	0.6	5e-50
157123730	381	ultraviolet-sensitive opsin [Aedes aegyp	0.993	0.391	0.617	7e-50
2935334	369	short wavelength-sensitive opsin [Catagl	1.0	0.406	0.6	8e-50

>gi|193690641|ref|XP_001951588.1| PREDICTED: opsin, ultraviolet-sensitive-like [Acyrthosiphon pisum]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 123/149 (82%)

Query: 2   DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVL 61
           +GRM+Y KAL+++I I+ YV+PW + P  EKW+RFVPEG+LTSC+FDYLTPTE  + +V 
Sbjct: 160 EGRMTYGKALILIICIWIYVLPWCLLPLTEKWNRFVPEGFLTSCSFDYLTPTEETKAFVG 219

Query: 62  FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIA 121
            MF+ICY IPM  II FYSQIV HVF+HEKALREQAKKMNVESLRS Q     SAEVRIA
Sbjct: 220 TMFVICYVIPMSFIIYFYSQIVCHVFNHEKALREQAKKMNVESLRSNQDANAQSAEVRIA 279

Query: 122 KTAITLCALFVASWTPYAVVALTGAFGDQ 150
           K AIT+C LFVA+WTPYAVVA+ GAFGDQ
Sbjct: 280 KAAITICFLFVAAWTPYAVVAMIGAFGDQ 308

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|10441608|gb|AAG17120.1| UV-wavelength like opsin [Megoura viciae]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 123/149 (82%)

Query: 2   DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVL 61
           +GRM+Y KAL+++I I+ YV+PW + P  EKW+RFVPEG+LTSC+FDYLTPTE  + +V 
Sbjct: 160 EGRMTYGKALILIICIWIYVLPWCLLPLTEKWNRFVPEGFLTSCSFDYLTPTEETKAFVG 219

Query: 62  FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIA 121
            MF+ICY IPM  II FYSQIV HVF+HEKALREQAKKMNVESLRS Q     SAEVRIA
Sbjct: 220 TMFVICYVIPMSFIIYFYSQIVCHVFNHEKALREQAKKMNVESLRSNQDANAQSAEVRIA 279

Query: 122 KTAITLCALFVASWTPYAVVALTGAFGDQ 150
           K AIT+C LFVA+WTPYAVVA+ GAFGDQ
Sbjct: 280 KAAITICFLFVAAWTPYAVVAMIGAFGDQ 308

Source: Megoura viciae

Species: Megoura viciae

Genus: Megoura

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721769|ref|XP_001951613.2| PREDICTED: opsin, ultraviolet-sensitive-like [Acyrthosiphon pisum]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 121/149 (81%)

Query: 2   DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVL 61
           DGRM+Y +A  ++I I+ Y +PW + P  EKW+R+VPEGYLTSCTFDYL+PT+  R +V 
Sbjct: 165 DGRMTYGRAFFLIICIWTYTLPWGLLPLTEKWNRYVPEGYLTSCTFDYLSPTDETRAFVG 224

Query: 62  FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIA 121
            MF+ICY IP+ ++I FYSQIV HVF+HEKALREQAKKMNVESLRS Q     SAEVRIA
Sbjct: 225 IMFVICYVIPVSLVIFFYSQIVSHVFNHEKALREQAKKMNVESLRSNQDANAQSAEVRIA 284

Query: 122 KTAITLCALFVASWTPYAVVALTGAFGDQ 150
           K AIT+C LF+ASWTPYAVVA+ GAFGD+
Sbjct: 285 KAAITICCLFIASWTPYAVVAMIGAFGDR 313

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482381|ref|XP_001608074.2| PREDICTED: opsin, ultraviolet-sensitive-like [Nasonia vitripennis]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 123/150 (82%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DG++S  + +M+++LI+ Y IPWA+ P +  W RFVPEG+LTSCTFDY+T ++ IR++V
Sbjct: 161 LDGKLSRGQVMMLIVLIWMYTIPWALMPSMGVWGRFVPEGFLTSCTFDYITDSDEIRYFV 220

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   Y IPM +II FYSQIVGHV +HEKALREQAKKMNVESLRSGQ + Q+SAEVRI
Sbjct: 221 GTIFTFSYAIPMTLIIYFYSQIVGHVVNHEKALREQAKKMNVESLRSGQNKDQASAEVRI 280

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK A+T+C LFVA+WTPY V++L GAFG++
Sbjct: 281 AKVALTICFLFVAAWTPYGVMSLIGAFGNK 310

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212281|gb|EFN88089.1| Opsin, ultraviolet-sensitive [Harpegnathos saltator]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 114/150 (76%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DG++S  + ++ ++LI+ Y IPWA+ P +  W RFVPEG+LTSCTFDYLT  + IR++V
Sbjct: 153 LDGKLSRGQVILFIVLIWTYTIPWALMPLMHVWGRFVPEGFLTSCTFDYLTDKQEIRYFV 212

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   YCIPM +II +YSQIV HV  HEKALREQAKKMNVESLRS       SAE+RI
Sbjct: 213 ATIFTFSYCIPMSLIIYYYSQIVSHVIDHEKALREQAKKMNVESLRSNANTNAQSAEIRI 272

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LFV SWTPY V+A+ GAFGD+
Sbjct: 273 AKAAITICFLFVLSWTPYGVLAMIGAFGDK 302

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047283|ref|XP_001851157.1| ultraviolet-sensitive opsin [Culex quinquefasciatus] gi|167869738|gb|EDS33121.1| ultraviolet-sensitive opsin [Culex quinquefasciatus]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 116/149 (77%)

Query: 2   DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVL 61
           +G+++++KA+ I  L++ Y IPW + P +E W RFVPEGYLTSCTFDYLT T   R +V 
Sbjct: 161 EGKLTHTKAIFITCLVWAYTIPWGLLPLMEIWGRFVPEGYLTSCTFDYLTNTFDNRMFVG 220

Query: 62  FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIA 121
            +F   Y +PM +II +YSQIV HV +HEKALREQAKKMNV+SLRS Q +  SS EVRIA
Sbjct: 221 TIFTFSYVLPMSLIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNQNQANSSVEVRIA 280

Query: 122 KTAITLCALFVASWTPYAVVALTGAFGDQ 150
           K AIT+C LFVASWTPYAV+AL GAFGD+
Sbjct: 281 KAAITVCFLFVASWTPYAVLALIGAFGDK 309

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187719|gb|EFN72691.1| Opsin, ultraviolet-sensitive [Camponotus floridanus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 118/150 (78%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DG++S  + L++++LI+ Y IPWA+ P ++ W RFVPEG+LTSC+FDYLT ++ IR++V
Sbjct: 153 LDGKLSRGQVLLLIMLIWTYTIPWALMPLMQVWGRFVPEGFLTSCSFDYLTDSQEIRYFV 212

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   YC+PM +II +YSQIVGHV SHEKALREQAKKMNVESLRS       SAE+RI
Sbjct: 213 ATIFTFSYCVPMLLIIYYYSQIVGHVVSHEKALREQAKKMNVESLRSNVNTNAQSAEIRI 272

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LFV SWTPY  +A+ GAFG++
Sbjct: 273 AKAAITICFLFVLSWTPYGALAMIGAFGNR 302

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2935336|gb|AAC05092.1| short wavelength-sensitive opsin [Camponotus atriceps]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 118/150 (78%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DG++S  + L++++LI+ Y IPWA+ P ++ W RFVPEG+LTSC+FDYLT ++ IR++V
Sbjct: 153 LDGKLSRGQVLLLIMLIWTYTIPWALMPLMQVWGRFVPEGFLTSCSFDYLTDSQEIRYFV 212

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   YC+PM +II +YSQIVGHV SHEKALREQAKKMNVESLRS       SAE+RI
Sbjct: 213 PTIFTFSYCVPMLLIIYYYSQIVGHVVSHEKALREQAKKMNVESLRSNVNTNAQSAEIRI 272

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LFV SWTPY  +A+ GAFG++
Sbjct: 273 AKAAITICFLFVLSWTPYGALAMIGAFGNR 302

Source: Camponotus atriceps

Species: Camponotus atriceps

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123730|ref|XP_001653866.1| ultraviolet-sensitive opsin [Aedes aegypti] gi|94469258|gb|ABF18478.1| ultraviolet-sensitive opsin [Aedes aegypti] gi|108874286|gb|EAT38511.1| AAEL009615-PA [Aedes aegypti]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 116/149 (77%)

Query: 2   DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVL 61
           +G+++++KA+ I  +++ Y  PWA+ P +E W RFVPEGYLTSCTFDYLT T   R +V 
Sbjct: 161 EGKLTHTKAIFITCMVWTYTFPWAVLPLMELWGRFVPEGYLTSCTFDYLTNTFDNRMFVG 220

Query: 62  FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIA 121
            +F   Y +PM +II +YSQIV HV +HEKALREQAKKMNV+SLRS Q +  +S EVRIA
Sbjct: 221 TIFTFSYVLPMSLIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNQNQANTSVEVRIA 280

Query: 122 KTAITLCALFVASWTPYAVVALTGAFGDQ 150
           K AIT+C LFVASWTPYAV+AL GAFGD+
Sbjct: 281 KAAITVCFLFVASWTPYAVLALIGAFGDK 309

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2935334|gb|AAC05091.1| short wavelength-sensitive opsin [Cataglyphis bombycinus]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 114/150 (76%)

Query: 1   MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
           +DG++S  + ++++ LI+ Y IPWA+ P +  W RFVPEG+LTSCTFDYLT T  IR++V
Sbjct: 154 LDGKLSRGQVILLIALIWTYTIPWALMPLMHVWGRFVPEGFLTSCTFDYLTDTPEIRYFV 213

Query: 61  LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
             +F   YCIPM +II +YSQIV HV +HEKALREQAKKMNVESLRS       SAE+RI
Sbjct: 214 ATIFTFSYCIPMSLIIYYYSQIVSHVVNHEKALREQAKKMNVESLRSNTNTNAQSAEIRI 273

Query: 121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
           AK AIT+C LFV SWTPY  +A+ GAFG++
Sbjct: 274 AKAAITICFLFVLSWTPYGTLAMIGAFGNK 303

Source: Cataglyphis bombycinus

Species: Cataglyphis bombycinus

Genus: Cataglyphis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
FB|FBgn0003249	383	Rh3 "Rhodopsin 3" [Drosophila	1.0	0.391	0.593	3.8e-46
FB|FBgn0003250	378	Rh4 "Rhodopsin 4" [Drosophila	1.0	0.396	0.566	1.7e-43
FB|FBgn0014019	382	Rh5 "Rhodopsin 5" [Drosophila	1.0	0.392	0.453	1.1e-34
FB|FBgn0003248	381	Rh2 "Rhodopsin 2" [Drosophila	0.94	0.370	0.398	9.7e-25
FB|FBgn0002940	373	ninaE "neither inactivation no	0.966	0.388	0.439	9.7e-25
FB|FBgn0019940	369	Rh6 "Rhodopsin 6" [Drosophila	0.946	0.384	0.370	4.8e-23
ZFIN|ZDB-GENE-070111-2	594	opn4a "opsin 4a (melanopsin)"	0.94	0.237	0.374	3.2e-21
UNIPROTKB|Q4R1I4	706	OPN4 "Melanopsin" [Branchiosto	0.94	0.199	0.370	4.6e-21
ZFIN|ZDB-GENE-030314-2	500	opn4.1 "opsin 4.1" [Danio reri	0.92	0.276	0.344	6.7e-20
UNIPROTKB|F1NEY8	528	OPN4 "Uncharacterized protein"	0.906	0.257	0.382	1e-19

FB|FBgn0003249 Rh3 "Rhodopsin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 89/150 (59%), Positives = 110/150 (73%)

Query:     1 MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
             M+G+M++ KA+ ++I IY Y  PW +  Y E W RFVPEGYLTSCTFDYLT     R +V
Sbjct:   163 MEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVPEGYLTSCTFDYLTDNFDTRLFV 222

Query:    61 LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
               +F   +  P  MI  +YSQIVGHVFSHEKALR+QAKKMNVESLRS   + + +AE+RI
Sbjct:   223 ACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRI 282

Query:   121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
             AK AIT+C LF  SWTPY V++L GAFGD+
Sbjct:   283 AKAAITICFLFFCSWTPYGVMSLIGAFGDK 312

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016039 "absorption of UV light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 85/150 (56%), Positives = 111/150 (74%)

Query:     1 MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
             M+  M+++KA+++ I+I+ Y  PW + P  + W RFVPEGYLTSC+FDYL+     R +V
Sbjct:   159 MNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYLTSCSFDYLSDNFDTRLFV 218

Query:    61 LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
               +F   +  P  MI+ +YSQIVGHVFSHEKALREQAKKMNVESLRS   + + +AE+RI
Sbjct:   219 GTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNVDKSKETAEIRI 278

Query:   121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
             AK AIT+C LF  SWTPY V++L GAFGD+
Sbjct:   279 AKAAITICFLFFVSWTPYGVMSLIGAFGDK 308

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0014019 Rh5 "Rhodopsin 5" [Drosophila melanogaster (taxid:7227)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 68/150 (45%), Positives = 102/150 (68%)

Query:     1 MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV 60
             +DGR+SY + +++++  + +  P+++ P  + W R+ PEG+LT+C+FDYLT T+  R +V
Sbjct:   157 IDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFV 216

Query:    61 LFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI 120
               +F+  Y IPM MI+  Y ++  HV  HEK L EQAKKMNV+SL +       S E+RI
Sbjct:   217 RTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRI 276

Query:   121 AKTAITLCALFVASWTPYAVVALTGAFGDQ 150
             AK A+ +  LF+ +WTPY+VVAL G FG+Q
Sbjct:   277 AKAALIIYMLFILAWTPYSVVALIGCFGEQ 306

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS

GO:0016021 "integral to membrane" evidence=ISS;NAS

GO:0007602 "phototransduction" evidence=IGI;ISS;NAS

GO:0009588 "UV-A, blue light phototransduction" evidence=NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016038 "absorption of visible light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

FB|FBgn0003248 Rh2 "Rhodopsin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 57/143 (39%), Positives = 89/143 (62%)

Query:     5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMF 64
             M+   ++M ++ I+   + W + P +  WS +VPEG LT+C+ DY+T   + R Y++   
Sbjct:   168 MTIKTSIMKILFIWMMAVFWTVMPLIG-WSAYVPEGNLTACSIDYMTRMWNPRSYLITYS 226

Query:    65 IICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTA 124
             +  Y  P+ +I   Y  I+  V +HEKA+REQAKKMNV+SLRS + +   SAE ++AK A
Sbjct:   227 LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSSE-DCDKSAEGKLAKVA 285

Query:   125 ITLCALFVASWTPYAVVALTGAF 147
             +T  +L+  +WTPY V+   G F
Sbjct:   286 LTTISLWFMAWTPYLVICYFGLF 308

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007602 "phototransduction" evidence=IGI;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0002940 ninaE "neither inactivation nor afterpotential E" [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 65/148 (43%), Positives = 88/148 (59%)

Query:     1 MDGR-MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFY 59
             M GR M+   AL  +  I+     W + P    WSR+VPEG LTSC  DYL    + R Y
Sbjct:   156 MAGRPMTIPLALGKIAYIWFMSSIWCLAPAFG-WSRYVPEGNLTSCGIDYLERDWNPRSY 214

Query:    60 VLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVR 119
             ++F  I  Y IP+ +I   Y  I+  V +HEKA+REQAKKMNV+SLRS + + + SAE +
Sbjct:   215 LIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSSE-DAEKSAEGK 273

Query:   120 IAKTAITLCALFVASWTPYAVVALTGAF 147
             +AK A+    L+  +WTPY V+   G F
Sbjct:   274 LAKVALVTITLWFMAWTPYLVINCMGLF 301

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007602 "phototransduction" evidence=ISS;IMP;NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0016029 "subrhabdomeral cisterna" evidence=IDA

GO:0005767 "secondary lysosome" evidence=IDA

GO:0016027 "inaD signaling complex" evidence=TAS;IPI

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0042052 "rhabdomere development" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP

GO:0009642 "response to light intensity" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0043052 "thermotaxis" evidence=IMP

FB|FBgn0019940 Rh6 "Rhodopsin 6" [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/143 (37%), Positives = 87/143 (60%)

Query:     5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMF 64
             ++ + A++ L++++     WA+ P L  W+R+VPEG +T+C  DY       R Y++   
Sbjct:   158 LTATAAVLRLMVVWTICGAWALMP-LFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYS 216

Query:    65 IICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTA 124
             +  Y  P+  II  Y  I+  V +HEKA+REQAKKMNV SLR+ + +   + E+++AK A
Sbjct:   217 LWVYLTPLLTIIFSYWHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVA 276

Query:   125 ITLCALFVASWTPYAVVALTGAF 147
             +T  +L+  +WTPY ++   G F
Sbjct:   277 LTTISLWFFAWTPYTIINYAGIF 299

GO:0007602 "phototransduction" evidence=IGI;ISS;NAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

ZFIN|ZDB-GENE-070111-2 opn4a "opsin 4a (melanopsin)" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 55/147 (37%), Positives = 87/147 (59%)

Query:     3 GRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLF 62
             G +S  +AL+IL++ + Y + W++ P+   WS +VPEG LTSCT+DY+T T S+R Y + 
Sbjct:   186 GVLSQKRALLILLVAWVYSLGWSLPPFFG-WSAYVPEGLLTSCTWDYMTFTPSVRAYTML 244

Query:    63 MFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQS-SAEVRIA 121
             +FI  + IP+ +II  Y      +F   +   E   K+N ++ R   K  Q    E ++A
Sbjct:   245 LFIFVFFIPLIVIIYCYF----FIFRSIRTTNEAVGKINGDNKRDSMKRFQRLKNEWKMA 300

Query:   122 KTAITLCALFVASWTPYAVVALTGAFG 148
             K A+ +  ++V SW+PY+ VALT   G
Sbjct:   301 KIALIVILMYVISWSPYSTVALTAFAG 327

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA;IDA

UNIPROTKB|Q4R1I4 OPN4 "Melanopsin" [Branchiostoma belcheri (taxid:7741)]

 Score = 257 (95.5 bits), Expect = 4.6e-21, P = 4.6e-21
 Identities = 53/143 (37%), Positives = 84/143 (58%)

Query:     9 KALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICY 68
             + +  ++L++ + + WA+ P L  WS +V EG+ TSCTFDY+TP  S   +   +F   Y
Sbjct:   201 RVMFAILLLWIWSLVWAL-PPLFGWSAYVSEGFGTSCTFDYMTPKLSYHIFTYIIFFTMY 259

Query:    69 CIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRS-GQKEGQSSAEVRIAKTAITL 127
              IP G++I  Y  I   V S +K   +  K+M  E +++  Q+E Q   E++ AK A  +
Sbjct:   260 FIPGGVMIYCYYNIFATVKSGDKQFGKAVKEMAHEDVKNKAQQERQRKNEIKTAKIAFIV 319

Query:   128 CALFVASWTPYAVVALTGAFGDQ 150
              +LF+++WTPYAVV+  G  G Q
Sbjct:   320 ISLFMSAWTPYAVVSALGTLGYQ 342

GO:0004744 "retinal isomerase activity" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007602 "phototransduction" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0009584 "detection of visible light" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

ZFIN|ZDB-GENE-030314-2 opn4.1 "opsin 4.1" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 6.7e-20, P = 6.7e-20
 Identities = 50/145 (34%), Positives = 88/145 (60%)

Query:     4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
             R+S  KA  +L++++ Y + W++ P+   WS +VPEG  TSC++DY+T T S+R Y + +
Sbjct:   175 RVSRRKAGAVLVVVWLYSLGWSLPPFFG-WSAYVPEGLQTSCSWDYMTFTPSVRAYTILL 233

Query:    64 FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
             F+  + IP+G+I + Y  I    F   +A  ++ ++++        +  Q+  E ++AK 
Sbjct:   234 FVFVFFIPLGIIGSCYFAI----FQTIRAAGKEIRELDCGETHKVYERMQN--EWKMAKV 287

Query:   124 AITLCALFVASWTPYAVVALTGAFG 148
             A+ +  LF+ SW+PY+VVALT   G
Sbjct:   288 ALVVIVLFIISWSPYSVVALTATAG 312

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA;IDA

GO:0008377 "light-induced release of internally sequestered calcium ion" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1NEY8 OPN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 57/149 (38%), Positives = 88/149 (59%)

Query:     5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMF 64
             MS  KAL+IL+ ++ Y + W++ P+   WS +VPEG LTSC++DY+T T S+R Y + +F
Sbjct:   142 MSKKKALIILVGVWLYSLAWSLPPFFG-WSAYVPEGLLTSCSWDYMTFTPSVRAYTMLLF 200

Query:    65 IICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSA-----EVR 119
                + IP+  II  YS    +VF  E A+++  K +     + G +E Q        E +
Sbjct:   201 CFVFFIPLIAII--YS----YVFIFE-AIKKANKSVQTFGCKHGNRELQKQYHRMKNEWK 253

Query:   120 IAKTAITLCALFVASWTPYAVVALTGAFG 148
             +AK A+ +  L+V SW+PY+VVAL    G
Sbjct:   254 LAKIALIVILLYVISWSPYSVVALVAFAG 282

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O61303	OPSUV_APIME	No assigned EC number	0.58	1.0	0.4043	yes	N/A
P28680	OPS3_DROPS	No assigned EC number	0.5933	1.0	0.3926	yes	N/A
P04950	OPS3_DROME	No assigned EC number	0.5933	1.0	0.3916	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-19

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 12/147 (8%)

Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
             +  +A +++++++   +  ++ P L  W R V EG +T+C  D+   +   R Y L  
Sbjct: 89  IRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTK-RSYTLLS 147

Query: 64  FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
            ++ + +P+ +I+  Y+ I+  +    ++   QA+               SS E + AK 
Sbjct: 148 TLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKR-----------SSSKERKAAKM 196

Query: 124 AITLCALFVASWTPYAVVALTGAFGDQ 150
            + +  +FV  W PY +V L  +    
Sbjct: 197 LLVVVVVFVLCWLPYHIVLLLDSLCPL 223

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG4219|consensus	423		99.83
KOG4220|consensus	503		99.74
PHA03234	338	DNA packaging protein UL33; Provisional	99.74
PHA03235	409	DNA packaging protein UL33; Provisional	99.74
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.73
PHA02834	323	chemokine receptor-like protein; Provisional	99.71
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.67
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.62
KOG2087|consensus	363		98.82
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	98.45
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	97.79
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	97.75
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	97.5
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.35
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	97.2
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	96.56
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	95.37
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	95.12
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	95.09
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	93.39
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	91.47
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	91.38
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	88.97
PF02076	283	STE3: Pheromone A receptor; InterPro: IPR001499 G-	88.92
KOG4193|consensus	610		88.67
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	87.92
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	87.11
KOG2575|consensus	510		82.44
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	81.96
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	80.13

>KOG4219|consensus

Probab=99.83  E-value=2e-20  Score=134.33  Aligned_cols=136  Identities=19%  Similarity=0.268  Sum_probs=101.7

Q ss_pred             CCCcccchhhhhhhHHHHHHHHHhhhhhccccccceeecC----CcceEEEeecCC--C-cch----hhhHHHHHHHHHH
Q psy15243          1 MDGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG----YLTSCTFDYLTP--T-ESI----RFYVLFMFIICYC   69 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~----~~~~C~~~~~~~--~-~~~----~~y~~~~~~~~~~   69 (150)
                      +++|.+++.+++.++++|++|++++.|.++. .+..+...    ....|...|++.  + ...    +.|.....++.++
T Consensus       141 l~~r~s~r~sk~iIllIW~lA~l~a~P~~l~-s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYf  219 (423)
T KOG4219|consen  141 LQPRPSRRSSKIIILLIWALALLLALPQLLY-SSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYF  219 (423)
T ss_pred             cccCCCCcceeehhHHHHHHHHHHhccceee-eeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHH
Confidence            3567899999999999999999999998774 32222111    134687777654  2 111    2377777789999


Q ss_pred             HhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         70 IPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        70 ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      +|++++..+|..|.+.+|..+....++           .++..+.++++|+.||+.+||+.|.+||+||++..++....
T Consensus       220 lPliVl~~~Yt~iav~LW~~~~~gd~~-----------d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~  287 (423)
T KOG4219|consen  220 LPLIVLGLAYTVIAVTLWGRRIPGDQQ-----------DRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATN  287 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCccchh-----------chhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhH
Confidence            999999999999999999765321111           01334567889999999999999999999999999987654

>KOG4220|consensus

Probab=99.74  E-value=1.4e-17  Score=120.06  Aligned_cols=87  Identities=14%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             CCcccchhhhhhhHHHHHHHHHhhhhhccccccceeec--CCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHH
Q psy15243          2 DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPE--GYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFY   79 (150)
Q Consensus         2 ~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~--~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y   79 (150)
                      +.|+|+++|..++++.|++|+++..|.+.- |...+..  .....|..++.+.+    .......+..|.+|..+|.+.|
T Consensus       139 rakRTtkrA~~MI~~AW~iSfiLWaPaIl~-WqyivGkrTv~~~eC~iQFlsnp----~iTfGTAiAAFYlPVtiM~~LY  213 (503)
T KOG4220|consen  139 RAKRTTKRAGLMIGAAWVLSFVLWAPAILF-WQYIVGKRTVPDGECYIQFLSNP----AITFGTAIAAFYLPVTIMTILY  213 (503)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHh-hHhheeeeecCCCceEEEeecCc----eeehhHHHHHHHhhHHHHHHHH
Confidence            456999999999999999999999887764 6443322  23446999886544    2344556778999999999999


Q ss_pred             HHHHHHHHhcchHH
Q psy15243         80 SQIVGHVFSHEKAL   93 (150)
Q Consensus        80 ~~I~~~l~~~~~~~   93 (150)
                      ++|++..++|.+..
T Consensus       214 ~rIyret~kR~k~~  227 (503)
T KOG4220|consen  214 WRIYRETRKRQKEL  227 (503)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999877654

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.74  E-value=3.6e-17  Score=118.94  Aligned_cols=113  Identities=10%  Similarity=0.066  Sum_probs=77.0

Q ss_pred             hhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHH---HHHHHHHHHhHHHHHHHHHHHHHH
Q psy15243          9 KALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVL---FMFIICYCIPMGMIINFYSQIVGH   85 (150)
Q Consensus         9 ~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~---~~~~~~~~ipl~ii~~~y~~I~~~   85 (150)
                      ++...++..|+.+++.++|++.. ......+...+.|...++.++. ...+..   ....+.|++|+++|++||.+|.+.
T Consensus       146 ~~~~~i~~~Wi~s~l~~~P~l~~-~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~  223 (338)
T PHA03234        146 HIGRNIGILFLASAMCAIPAALF-VKTEGKKGNYGKCNIHISSKKA-YDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKA  223 (338)
T ss_pred             hHHHHHHHHHHHHHHHHhhHhHe-eeeeecCCCCCcCcccCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566799999999998763 3222222223569877643321 122221   222345799999999999999999


Q ss_pred             HHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy15243         86 VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGA  146 (150)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~  146 (150)
                      ++++.                       .++++|++|++++++++|++||+||+++.++..
T Consensus       224 L~~~~-----------------------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~  261 (338)
T PHA03234        224 LHALT-----------------------EKKHKKTLFFIRILILSFLCIQIPNIAILICEI  261 (338)
T ss_pred             HHhhh-----------------------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            86420                       134678999999999999999999999887654

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.74  E-value=3.3e-17  Score=121.73  Aligned_cols=119  Identities=13%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccc-----eee-cCCcceEEEeecCCCcc--hhhhHHHHHHHHHHHhHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSR-----FVP-EGYLTSCTFDYLTPTES--IRFYVLFMFIICYCIPMGMII   76 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~-----~~~-~~~~~~C~~~~~~~~~~--~~~y~~~~~~~~~~ipl~ii~   76 (150)
                      .+++++..+++++|+.++++++|+++. .+.     ..+ ..+...|...+..+...  ...|.+...++.|++|+++|+
T Consensus       143 ~~~~~a~~ii~~iWi~sll~s~P~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~  221 (409)
T PHA03235        143 SAYRSTYKILGLTWFASLICSGPAPVY-TTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMT  221 (409)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHH-HhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999987542 211     111 12345697655433211  124556666778999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243         77 NFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF  147 (150)
Q Consensus        77 ~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~  147 (150)
                      +||.+|++.++++.+                       ++++|..+++++++++|++||+||+++.++..+
T Consensus       222 ~~Y~~I~~~l~~~~~-----------------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~  269 (409)
T PHA03235        222 WFYTFFYRTLKRASY-----------------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSY  269 (409)
T ss_pred             HHHHHHHHHHHhhhh-----------------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999986521                       123467889999999999999999999887643

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.73  E-value=4.3e-17  Score=112.88  Aligned_cols=133  Identities=22%  Similarity=0.456  Sum_probs=102.0

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCC-cceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGY-LTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      .+++++...++++|+.++++++|+.++ .+......+ ...|..++....  ...+.....++.+++|+.+++++|.+|.
T Consensus        96 ~~~~~~~~~i~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~i~  172 (257)
T PF00001_consen   96 RTRRRARIIIILIWIISFLISLPPLFF-SWVYFVSDGSQSFCFIDFSSSS--SQIYFIYFFIVFFILPLIIILICYIRIL  172 (257)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEESTCCCEEEEESCSSSH--HHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccceeeeeeeccccc
Confidence            667899999999999999999999875 444433333 567988764443  3456667777889999999999999999


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGD  149 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~~  149 (150)
                      +.++++.++...+         .++..+.+.++|+|+++++.+++++|++||+|+.+..++..+.+
T Consensus       173 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~  229 (257)
T PF00001_consen  173 RKLRRQRKRIKSQ---------SSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSP  229 (257)
T ss_dssp             HHHHHHHHCTCCH---------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccccccccccccc---------cccccccccccccccccccccccccccccCCceeHHHHHHHHcC
Confidence            9999876642111         00113345578899999999999999999999999999887664

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.71  E-value=3e-17  Score=118.80  Aligned_cols=118  Identities=19%  Similarity=0.315  Sum_probs=82.1

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcch-hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESI-RFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~-~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      .+.+++..+++.+|+.+++.++|++++ +... ...+...|......++... ..|.....+..|++|+++|+++|.+|.
T Consensus       136 ~~~~~~~~~i~~iWi~s~l~~~P~~~~-~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~  213 (323)
T PHA02834        136 KSISLSVLLSVAAWVCSVILSMPAMVL-YYVD-NTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKIL  213 (323)
T ss_pred             CccchHHHHHHHHHHHHHHHHhhHHHH-HHhc-cCCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778888999999999998875 4322 2223346864322221111 112333446789999999999999999


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF  147 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~  147 (150)
                      +.++++.+                       ++++|++|++++++++|++||+||++..++..+
T Consensus       214 ~~l~~~~~-----------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~  254 (323)
T PHA02834        214 YTLKNCKN-----------------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSL  254 (323)
T ss_pred             HHHHhccC-----------------------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHH
Confidence            99876421                       123577899999999999999999999887654

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.67  E-value=8.1e-16  Score=114.68  Aligned_cols=119  Identities=13%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhcccccccee-------ec--CCcceEEEeecCCCcc----hhhhHHHHHHHHHHHh
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFV-------PE--GYLTSCTFDYLTPTES----IRFYVLFMFIICYCIP   71 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~-------~~--~~~~~C~~~~~~~~~~----~~~y~~~~~~~~~~ip   71 (150)
                      .+++++...++.+|+.++++++|+++. .+...       .+  .....|...++.+...    ...+.....++.+++|
T Consensus       207 ~~~~~~~i~~~~iW~~s~l~slP~~~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lP  285 (417)
T PHA02638        207 RTFNIGIILCIISWILSLIITSPAYFI-FEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIP  285 (417)
T ss_pred             ecHhhhHhhHhHHHHHHHHHHHHHHHH-hhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            455666778889999999999999874 33211       11  1134787655433211    1123334456779999


Q ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243         72 MGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAF  147 (150)
Q Consensus        72 l~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~  147 (150)
                      ++++++||.+|++.+++..                       .++++|++|++++++++|++||+||+++.++..+
T Consensus       286 l~vmi~cY~~I~~~L~~~~-----------------------~~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~  338 (417)
T PHA02638        286 IIIFAFCYIKIILKLKQLK-----------------------KSKKTKSIIIVSIIIICSLICWIPLNIVILFATM  338 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhh-----------------------ccccchhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999986431                       1234677899999999999999999999888765

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.62  E-value=1.5e-14  Score=105.06  Aligned_cols=118  Identities=18%  Similarity=0.285  Sum_probs=87.2

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhH-HHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYV-LFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~-~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      .+.+++..+++++|+.+++.+.|++.. + ....+.+...|...+..+......+. ....++.+++|+++++++|.+|.
T Consensus       150 ~~~~~~~~~~~~iWl~~~~~~~p~~~~-~-~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~  227 (335)
T PHA03087        150 NTVKYGYIVSLVIWIISIIETTPILFV-Y-TTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKIL  227 (335)
T ss_pred             cchhhhHHHHHHHHHHHHHHhccHhhe-e-eeeccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888999999999999999988774 3 33333445678877753332122222 23446679999999999999999


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGA  146 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~  146 (150)
                      +.++++.+                      .++++|+.|++.+++++|++||+|+++..++..
T Consensus       228 ~~l~~~~~----------------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~  268 (335)
T PHA03087        228 ITLKGINK----------------------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYS  268 (335)
T ss_pred             HHHHhccc----------------------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88875421                      134568899999999999999999998776654

>KOG2087|consensus

Probab=98.82  E-value=3e-09  Score=76.46  Aligned_cols=120  Identities=16%  Similarity=0.218  Sum_probs=87.7

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      +...|.+..+++..|+.+++.++.|++| .+.|...   ..|.+...++.. ...|.+..++....+.+++|+++|.+++
T Consensus       142 ~~~lr~~~~ill~~wl~~~l~A~~Pl~g-~s~Y~~~---~vClPL~~~~~~-s~g~y~~~~l~~N~lafiiia~~Y~~iy  216 (363)
T KOG2087|consen  142 KAKLRPLVLILLLGWLFAFLMALLPLFG-ISSYGAS---SVCLPLHIEEPL-STGYYLVALLGLNLLAFIIIAFSYGKIY  216 (363)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhccccC-CCCCccc---ceeeecccCCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3445558888899999999999999997 5554332   569887655553 3325555666778899999999999999


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      ..+++.....                    ...+.+.+|-++.++++-++||.|-+...+...++
T Consensus       217 ~~l~~~~~~~--------------------~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~  261 (363)
T KOG2087|consen  217 CSLRKGDLSA--------------------TLISTSVAKRMAFLVFTDCICWCPIAFFKFSALIG  261 (363)
T ss_pred             eeeecCCCcc--------------------ccchhhhhhCeeEEEEccccccCchheeeeHHhcC
Confidence            9998653210                    11114667778888999999999998887766554

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=98.45  E-value=1.7e-05  Score=57.32  Aligned_cols=73  Identities=15%  Similarity=0.369  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHH
Q psy15243         59 YVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPY  138 (150)
Q Consensus        59 y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~  138 (150)
                      +......+..++|+.++..+...+...++||.+++++.         .++.+..+.+++.|+.|++...++.|+++++-.
T Consensus       180 ~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n---------~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~  250 (303)
T PF05296_consen  180 YFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKN---------ATGFRDPSTEAHIRAIKTMISFLILYIIYFLSL  250 (303)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCC---------CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444458899999999999999999999999887532         122244566788999999999888888877665


Q ss_pred             HH
Q psy15243        139 AV  140 (150)
Q Consensus       139 ~i  140 (150)
                      .+
T Consensus       251 ~~  252 (303)
T PF05296_consen  251 IL  252 (303)
T ss_pred             HH
Confidence            44

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.79  E-value=0.0005  Score=49.82  Aligned_cols=127  Identities=13%  Similarity=0.184  Sum_probs=80.5

Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhccccccceeec---CCcceEEEeecC---CC-------cc----h----hhhHHHHH
Q psy15243          6 SYSKALMILILIYCYVIPWAMFPYLEKWSRFVPE---GYLTSCTFDYLT---PT-------ES----I----RFYVLFMF   64 (150)
Q Consensus         6 ~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~---~~~~~C~~~~~~---~~-------~~----~----~~y~~~~~   64 (150)
                      +++.+...+..+.+.+.+++++..+. ..-...+   .+...|.. ++.   .+       ..    +    ..|..+.-
T Consensus       120 ~~k~~~~~i~~v~~~s~~~~~~~~~~-~~i~~~~~~~~p~~~C~~-~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~g  197 (318)
T PF10324_consen  120 KPKFAIIVILIVFIISFLFSIPYFFR-YKIVEVSDPWVPPPNCSG-FPENYTFPRYMLNISELFTENDCLFFRIYFFIDG  197 (318)
T ss_pred             CCCeeeeehHHHHHHHHHHHHHhhce-EEEEeccccccCCCceee-ccccccccccchhhhhhhhhhHHHHHHHHHHhhh
Confidence            45666677777888888888877764 3222111   12345861 110   00       00    0    01112222


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15243         65 IICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALT  144 (150)
Q Consensus        65 ~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~  144 (150)
                      ++.-++|.++..+......+.+++.++++++..             +.+..++.+.++++..+.+.|+++=+|+.+..++
T Consensus       198 i~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~-------------~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~  264 (318)
T PF10324_consen  198 IFFKIIPCILLPILTILLIIELRKAKKRRKKLS-------------SSKSKKSDRTTKLILFMTISFLISELPQGIIFLL  264 (318)
T ss_pred             hHhhhhhHHHHHHHHHHHHHHHHhccHhhhccc-------------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334678999999999999999998776543211             1113456678999999999999999999999998


Q ss_pred             Hhc
Q psy15243        145 GAF  147 (150)
Q Consensus       145 ~~~  147 (150)
                      +.+
T Consensus       265 ~~~  267 (318)
T PF10324_consen  265 ESF  267 (318)
T ss_pred             HHH
Confidence            764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.75  E-value=0.00049  Score=49.29  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=68.6

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVG   84 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~   84 (150)
                      .++.+...+.+.-|+.+.+.++|.+.  .++...+..+.  .....+++. ......... ....+-.+..+++|..++.
T Consensus       115 ~~~~~~~~i~~i~wi~p~li~~~~~~--~~~~~f~~~~~--~~~~~d~~~-~~~~~~~~~-~~~~~~cv~~iv~Y~~i~~  188 (283)
T PF10323_consen  115 WQPAKIWIIILIQWIPPLLISLPFFF--DTDFYFDNEEN--MSLFVDPEF-IQRNFLIAF-IFVSVTCVICIVCYGIIFI  188 (283)
T ss_pred             ccccchhheeeeeehhhhhheeeeec--cCceeeecccc--eeeecCHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            56666777778889999999988665  44444444333  222212221 112222222 3344555567899999999


Q ss_pred             HHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHH
Q psy15243         85 HVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPY  138 (150)
Q Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~  138 (150)
                      .+|++.+..             +.+.+++.++|.|.+.+.++.++++++.-.=+
T Consensus       189 ~iRk~~k~~-------------s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~  229 (283)
T PF10323_consen  189 FIRKRNKKK-------------SKSSSRSRRREIRLAIQVFILFCAFFVILVYY  229 (283)
T ss_pred             HHHHhhhhh-------------hHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999775411             11134456788898888887777665544433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.50  E-value=0.00044  Score=48.90  Aligned_cols=126  Identities=13%  Similarity=0.109  Sum_probs=76.5

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhcc---ccccceeec---CCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHH
Q psy15243          7 YSKALMILILIYCYVIPWAMFPYL---EKWSRFVPE---GYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYS   80 (150)
Q Consensus         7 ~~~~~~~~~~~W~~~~~~~~p~~~---~~~~~~~~~---~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~   80 (150)
                      ++.....+...|+.-.+.+.....   + .++.+..   .....|.....+... ...|..+. .+.=++.+.+|+..-.
T Consensus        92 pk~i~~~~~~~Wilnlli~~~~~~~~~~-~~n~t~~~~~~~~~yCs~~~~~~~~-~~~~~~~~-~~~D~~fvgLM~~aSg  168 (265)
T PF03402_consen   92 PKYIGPSCLFCWILNLLININVLVYIIA-TPNSTNNNFTYSLGYCSSVPISYIV-SSLFATLL-SFRDVLFVGLMIWASG  168 (265)
T ss_pred             CCccccHHHHHHHHHHhhhcceeEEEEe-cCccccCceeecCCeEEEEecchhh-hhhhhhHH-HhhHHHHHHHHHhhhh
Confidence            334455566779887766543222   2 1121111   123468765432221 22233232 2333566778888888


Q ss_pred             HHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15243         81 QIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALT  144 (150)
Q Consensus        81 ~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~  144 (150)
                      .+.-.+.||+++.+.-         ++.....+...|.||++++.+.|..|+..+.--.++...
T Consensus       169 yMV~~L~RH~q~VqhI---------hs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~  223 (265)
T PF03402_consen  169 YMVFLLYRHHQQVQHI---------HSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIY  223 (265)
T ss_pred             hheeeeeecccccccC---------cCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHH
Confidence            8889999998876432         222244556789999999999999999999888776554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.35  E-value=0.011  Score=42.85  Aligned_cols=26  Identities=12%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhcCC
Q psy15243        124 AITLCALFVASWTPYAVVALTGAFGD  149 (150)
Q Consensus       124 l~~iv~~f~icw~P~~i~~l~~~~~~  149 (150)
                      +..=.++|++||.|-.+-.+.+.+++
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~~  229 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIGK  229 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44577889999999999888887653

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.20  E-value=0.012  Score=41.80  Aligned_cols=124  Identities=12%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhcccccccee-ecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFV-PEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      .+.+.+..+++..|+.++....++.+. .+-.. ++++  .-...+++++. -..+...........-.+++..++..++
T Consensus       106 fs~~~T~~~i~~~~~~~~~~~~~~~~~-~~C~~~y~~~--~~~~~~~~~~~-C~~~~~~~~~~~~~~~~~~~~~lni~t~  181 (274)
T PF10328_consen  106 FSFKNTIILIAFIWLLSIIISTILYFP-DGCYFYYDPE--TWSWSYPTDPP-CGNYSWYFDFYKNFILVIISNILNIITF  181 (274)
T ss_pred             cCccceehhhhHHHHHHHHHHHHhhhc-CCCcceeccc--eeeeecCCCCc-cchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888889999999998776655442 22211 1211  11112212211 1122222222333444555677888888


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVA  142 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~  142 (150)
                      .++++..++.          ...+++.++++++|.+..+....--..|.+.+.=|....
T Consensus       182 ikl~~~~~~~----------~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~  230 (274)
T PF10328_consen  182 IKLRKFRKKI----------SVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIP  230 (274)
T ss_pred             HHHHHhhhhc----------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887665543          011222445567788888888888888888876665543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=96.56  E-value=0.029  Score=41.57  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH
Q psy15243        120 IAKTAITLCALFVASWTPYAVVAL  143 (150)
Q Consensus       120 ~~~~l~~iv~~f~icw~P~~i~~l  143 (150)
                      +-+-.+.|.++|.+||+|..+=-+
T Consensus       242 IK~kFf~I~lVF~iCWlpNIINg~  265 (405)
T PF02101_consen  242 IKIKFFKIMLVFYICWLPNIINGS  265 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhHH
Confidence            344567888999999999866444

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.37  E-value=0.23  Score=35.13  Aligned_cols=79  Identities=11%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             CcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHH
Q psy15243         41 YLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRI  120 (150)
Q Consensus        41 ~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  120 (150)
                      ....|.+...-.+.....+..    ...++. .+.++.|......++++.+                    ++.++++|+
T Consensus       131 ~~~~C~pp~a~~~~~~~~~~~----~~~~in-v~tvivY~i~~~~~~~k~~--------------------~~~~~~~kv  185 (257)
T PF10320_consen  131 TIVICNPPLAFHGTASQIWSY----SNIIIN-VITVIVYIITIIIFKRKSR--------------------SNSSRSKKV  185 (257)
T ss_pred             ccccCCCccccCccHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHcc--------------------ccchhHHHH
Confidence            345787754433321222221    222332 2335666666666665422                    134667899


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH
Q psy15243        121 AKTAITLCALFVASWTPYAVVALT  144 (150)
Q Consensus       121 ~~~l~~iv~~f~icw~P~~i~~l~  144 (150)
                      .|.+.+.++.|+.+|.=-.+...+
T Consensus       186 ~ksL~v~v~i~i~~w~~s~~~~~v  209 (257)
T PF10320_consen  186 FKSLKVTVIIFIFSWFLSQIINTV  209 (257)
T ss_pred             HHHhhhheeeeeHHHHHHHHHHHH
Confidence            999999999999999765554443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.12  E-value=0.28  Score=35.74  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=34.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHH
Q psy15243         66 ICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFV  132 (150)
Q Consensus        66 ~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~  132 (150)
                      .....-++.+++.+...+.++|+.+.+.           ...++++.+.++|+-.+.++.++++-++
T Consensus       202 ~~s~~~~~~iii~N~lm~~Klr~~k~~l-----------~~~~~s~~~~KAE~SLT~Tmi~mliP~i  257 (307)
T PF10322_consen  202 FFSIFWMISIIILNILMFFKLRKLKSSL-----------SSQRRSKQSRKAERSLTLTMISMLIPYI  257 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------cchhhcccchhhheeHHHHHHHHHHHHH
Confidence            3344555666788888888888764211           0111244556778877777777766554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.09  E-value=0.3  Score=35.44  Aligned_cols=70  Identities=9%  Similarity=0.039  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15243         62 FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVV  141 (150)
Q Consensus        62 ~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~  141 (150)
                      .........-..+..+++..+++.+++.++++                ++++.++.+++.+.+.+=.++-.+|-+|..+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i----------------S~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~  259 (303)
T PF10327_consen  196 ILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI----------------SKQTYQKHKEAVRSLIAQFATSSICILPPFIF  259 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445566667777888899999888766544                33455677788888887777778888998887


Q ss_pred             HHHHhc
Q psy15243        142 ALTGAF  147 (150)
Q Consensus       142 ~l~~~~  147 (150)
                      .+...+
T Consensus       260 ~~~~~~  265 (303)
T PF10327_consen  260 VVVVIF  265 (303)
T ss_pred             hhhhee
Confidence            765443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=93.39  E-value=0.76  Score=31.35  Aligned_cols=51  Identities=18%  Similarity=0.062  Sum_probs=32.2

Q ss_pred             eeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcch
Q psy15243         36 FVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEK   91 (150)
Q Consensus        36 ~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~   91 (150)
                      ..+.+....|....   +  ...+-+...-+--++-.+.+++.|..|+..+|++.|
T Consensus       149 ~~Y~~~g~WCWi~~---~--~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~  199 (201)
T PF11710_consen  149 PGYGPAGAWCWIPS---R--YEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR  199 (201)
T ss_pred             CcccccCcEEEECC---C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            33455567897652   1  112334444444556677779999999999998754

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=91.47  E-value=4.4  Score=29.92  Aligned_cols=41  Identities=5%  Similarity=0.008  Sum_probs=27.6

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeec
Q psy15243          8 SKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYL   50 (150)
Q Consensus         8 ~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~   50 (150)
                      +++...=+..|.+..+..+..+.  .++.+.|+..+.|.....
T Consensus       134 ~~s~yfH~~aW~iP~~~ti~vL~--~~~VdgD~ltGiC~Vg~~  174 (328)
T PF01534_consen  134 KKSSYFHLVAWGIPAVLTIAVLA--LRKVDGDELTGICFVGNQ  174 (328)
T ss_pred             hhcchhhhHHhhhhHHHHHHHHH--hcccccccccceeEEeCC
Confidence            34455557789888877766555  556666676778988743

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=91.38  E-value=2.2  Score=31.21  Aligned_cols=70  Identities=13%  Similarity=0.112  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHH
Q psy15243         59 YVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPY  138 (150)
Q Consensus        59 y~~~~~~~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~  138 (150)
                      |........-++-.+...++|..+...+++..+..               .+++..+++++..-...++.+...+.+.=|
T Consensus       195 Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~---------------~s~~~~k~~~qI~iQs~iIC~f~~i~a~iy  259 (313)
T PF10321_consen  195 YSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS---------------TSSQLSKAQRQIFIQSVIICFFHAIAAVIY  259 (313)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------cchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55444445555556777889999888887664321               133445667777777777777777777666


Q ss_pred             HHHHH
Q psy15243        139 AVVAL  143 (150)
Q Consensus       139 ~i~~l  143 (150)
                      ..+..
T Consensus       260 v~m~f  264 (313)
T PF10321_consen  260 VYMQF  264 (313)
T ss_pred             Heeee
Confidence            55443

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=88.97  E-value=0.12  Score=35.88  Aligned_cols=20  Identities=20%  Similarity=0.391  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHH
Q psy15243        119 RIAKTAITLCALFVASWTPY  138 (150)
Q Consensus       119 r~~~~l~~iv~~f~icw~P~  138 (150)
                      +..+....+...+.++|...
T Consensus       195 ~~~~~~~~L~~llg~~w~~~  214 (242)
T PF00002_consen  195 KILRASLILLPLLGITWLFG  214 (242)
T ss_dssp             --------------------
T ss_pred             hHHHHHHHHHHHHHHHheee
Confidence            36677777777788888764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=88.92  E-value=7  Score=28.25  Aligned_cols=21  Identities=14%  Similarity=0.377  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q psy15243        124 AITLCALFVASWTPYAVVALT  144 (150)
Q Consensus       124 l~~iv~~f~icw~P~~i~~l~  144 (150)
                      +..+.++.+++.+|..+..++
T Consensus       200 L~~la~~~i~~~~P~~i~~~v  220 (283)
T PF02076_consen  200 LLALALVIILIYLPLSIYYLV  220 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666677788899999999988

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>KOG4193|consensus

Probab=88.67  E-value=2.4  Score=34.04  Aligned_cols=61  Identities=11%  Similarity=-0.036  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15243         15 ILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHV   86 (150)
Q Consensus        15 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~~l   86 (150)
                      +..|....+.....+......+........|..+-...    ..+.       |+-|+.+++.+++.++...
T Consensus       432 ~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~----~~~~-------F~GPv~~ii~~Ni~~Fv~t  492 (610)
T KOG4193|consen  432 LYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNG----FIWS-------FLGPVTLIILVNIVMFVVT  492 (610)
T ss_pred             HHHhhhhHHHHhheeEEeccCccccccCCceEEecCCc----eEEE-------EehHHHHHHHHHHHHHHHH
Confidence            57787766554433321022221222333586652111    1111       6677777777775555444

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=87.92  E-value=1.4  Score=25.08  Aligned_cols=29  Identities=14%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Q psy15243        115 SAEVRIAKTAITLCALFVASWT-PYAVVAL  143 (150)
Q Consensus       115 ~~~~r~~~~l~~iv~~f~icw~-P~~i~~l  143 (150)
                      ++-+|.++.+++==++|+++|+ |+.+-..
T Consensus         5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~   34 (76)
T PF11970_consen    5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRM   34 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446778899999999999999 9765443

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=87.11  E-value=9.3  Score=27.59  Aligned_cols=104  Identities=19%  Similarity=0.247  Sum_probs=54.1

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhccccccceeecCC----cceEEEe---ecCCCcchhhhHHHHHHHHHHHhHHHHHHHH
Q psy15243          7 YSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGY----LTSCTFD---YLTPTESIRFYVLFMFIICYCIPMGMIINFY   79 (150)
Q Consensus         7 ~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~----~~~C~~~---~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y   79 (150)
                      +.-..+.+..+|+.++..-...... -=.+.++..    .-.|...   ...++.  ...-++..++.+.+|..+ ...|
T Consensus       131 s~~iyiWL~~vWils~~v~~~l~~~-nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P--~~IqiiE~ilQ~~IPi~I-l~iY  206 (305)
T PF04789_consen  131 SPVIYIWLLLVWILSIGVVYSLMSN-NCRYRYNKWSKHYQLNCETCNSVVDISPP--RGIQIIEIILQFGIPIFI-LVIY  206 (305)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhC-CCeeecccccccEEEEcCCCCeeEeeCCC--CchhHHHHHHHHhHHHHH-HHHH
Confidence            3445667777888887654433221 112222211    1135332   111111  123356778899999887 5556


Q ss_pred             HHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHH
Q psy15243         80 SQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVA  133 (150)
Q Consensus        80 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~i  133 (150)
                      +.+.-++-.-.                   +....+.|.+.+|.-..+.++|-+
T Consensus       207 iAIIiKI~~MK-------------------kssLnK~Ei~ILKQAifIFvlFQ~  241 (305)
T PF04789_consen  207 IAIIIKIIKMK-------------------KSSLNKNEITILKQAIFIFVLFQA  241 (305)
T ss_pred             HHHHHHHHHHh-------------------hccCCchhHHHHHHHHHHHHHHHH
Confidence            65554443110                   222345688888887777666644

>KOG2575|consensus

Probab=82.44  E-value=2  Score=32.54  Aligned_cols=25  Identities=32%  Similarity=0.620  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15243        117 EVRIAKTAITLCALFVASWTPYAVV  141 (150)
Q Consensus       117 ~~r~~~~l~~iv~~f~icw~P~~i~  141 (150)
                      -.|..+.-.+++++|.++|.|+...
T Consensus       254 f~ri~~ia~~Vv~TF~iiw~P~~~~  278 (510)
T KOG2575|consen  254 FARIIKIALAVVGTFVIIWLPFLLS  278 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678889999999999999998654

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=81.96  E-value=15  Score=25.84  Aligned_cols=50  Identities=12%  Similarity=0.001  Sum_probs=28.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHh
Q psy15243         66 ICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASW  135 (150)
Q Consensus        66 ~~~~ipl~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw  135 (150)
                      ..+++-+++.++++..+.+++++..++                    .++.|++..++..+..+++.+.=
T Consensus       175 ~~~i~~~ii~i~~~~~~~~~l~~~~~~--------------------~~~~er~L~~is~~~~~~~~~~~  224 (275)
T PF02118_consen  175 IYFIIIIIITIITNIITYRRLRKLSKR--------------------IKSVERNLTIISFIISFVQLLIA  224 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhh--------------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555666777777777654321                    23456677766666555554433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=80.13  E-value=19  Score=25.85  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q psy15243        114 SSAEVRIAKTAITLCALFVASWTPYAVVALTGAF  147 (150)
Q Consensus       114 ~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~  147 (150)
                      ++..++..|.+.+=.+.=.++..|-....++..+
T Consensus       219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~  252 (292)
T PF10317_consen  219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQF  252 (292)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3445566666665555556666766555555443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		1e-22
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		1e-22
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		5e-10
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		5e-10
2x72_A	349	Crystal Structure Of The Constitutively Active E113		5e-10
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		5e-10
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		5e-10
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		1e-09
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		2e-04

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 3/145 (2%)
Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
           +MS+ +A +++I ++ + + WA+ P    W  +  EG L +C+FDY++   + R  +L M
Sbjct: 146 KMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLEGVLCNCSFDYISRDSTTRSNILCM 204
Query: 64  FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
           FI+ +  P+ +I   Y  IV  V +HEK +   AK++N + LR  Q    ++AE+R+AK 
Sbjct: 205 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQ--AGANAEMRLAKI 262
Query: 124 AITLCALFVASWTPYAVVALTGAFG 148
           +I + + F+ SW+PYAVVAL   FG
Sbjct: 263 SIVIVSQFLLSWSPYAVVALLAQFG 287

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 3/145 (2%)
Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
           +MS+ +A +++I ++ + + WA+ P    W  +  EG L +C+FDY++   + R  +L M
Sbjct: 145 KMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLEGVLCNCSFDYISRDSTTRSNILCM 203
Query: 64  FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
           FI+ +  P+ +I   Y  IV  V +HEK +   AK++N + LR  Q    ++AE+R+AK 
Sbjct: 204 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQ--AGANAEMRLAKI 261
Query: 124 AITLCALFVASWTPYAVVALTGAFG 148
           +I + + F+ SW+PYAVVAL   FG
Sbjct: 262 SIVIVSQFLLSWSPYAVVALLAQFG 286

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28  PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
           P L  WSR++PEG   SC  DY TP E      +V++MF++ + IP+ +I   Y Q+   
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86  VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
           VF+ ++A  +Q +    +            AE  + +  I +   F+  W PYA VA 
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 274

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28  PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
           P L  WSR++PEG   SC  DY TP E      +V++MF++ + IP+ +I   Y Q+   
Sbjct: 170 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 226
Query: 86  VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
           VF+ ++A  +Q +    +            AE  + +  I +   F+  W PYA VA 
Sbjct: 227 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 273

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28  PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
           P L  WSR++PEG   SC  DY TP E      +V++MF++ + IP+ +I   Y Q+   
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86  VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
           VF+ ++A  +Q +    +            AE  + +  I +   F+  W PYA VA 
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 274

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28  PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
           P L  WSR++PEG   SC  DY TP E      +V++MF++ + IP+ +I   Y Q+   
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86  VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
           VF+ ++A  +Q +    +            AE  + +  I +   F+  W PYA VA 
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 274

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 28  PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
           P L  WSR++PEG   SC  DY TP E      +V++MF++ + IP+ +I   Y Q+   
Sbjct: 170 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 226
Query: 86  VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
           VF+ ++A  +Q +    +            AE  + +  I +   F+  W PYA VA 
Sbjct: 227 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIMVIAFLICWLPYAGVAF 273

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 28  PYLEKWSRFVPEGYLTSCTFDYLTPTESIRF--YVLFMFIICYCIPMGMIINFYSQIVGH 85
           P L  WSR++PEG   SC  DY TP E      +V++MF++ + IP+ +I   Y Q+   
Sbjct: 171 PPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL--- 227
Query: 86  VFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVAL 143
           VF+ ++A  +Q +    +            AE  + +  I     F+  W PYA VA 
Sbjct: 228 VFTVKEAAAQQQESATTQ-----------KAEKEVTRMVIIYVIAFLICWLPYAGVAF 274

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 43  TSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
            +C F+ + P   + + V F F  C  +P+ +++  Y +I         A R Q K+M  
Sbjct: 164 VACLFEDVVP---MNYMVYFNFFACVLVPLLLMLGVYLRIFA-------AARRQLKQMES 213
Query: 103 ESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVV 141
           + L   +       EV  AK+A  +  LF   W P  ++
Sbjct: 214 QPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHII 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-46
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	5e-37
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	3e-10
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	4e-10
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	6e-07
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	1e-04
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	6e-04

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score =  153 bits (388), Expect = 9e-46
 Identities = 53/147 (36%), Positives = 89/147 (60%), Gaps = 3/147 (2%)

Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
           +MS+ +A +++I ++ + + WA+ P    W  +  EG L +C+FDY++   + R  +L M
Sbjct: 146 KMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYTLEGVLCNCSFDYISRDSTTRSNILCM 204

Query: 64  FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
           FI+ +  P+ +I   Y  IV  V +HEK +   AK++N + LR  Q    ++AE+R+AK 
Sbjct: 205 FILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQA--GANAEMRLAKI 262

Query: 124 AITLCALFVASWTPYAVVALTGAFGDQ 150
           +I + + F+ SW+PYAVVAL   FG  
Sbjct: 263 SIVIVSQFLLSWSPYAVVALLAQFGPL 289

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score =  128 bits (324), Expect = 5e-37
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)

Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESI--RFYVL 61
           R   + A+M +   +   +  A  P +  WSR++PEG   SC  DY TP E      +V+
Sbjct: 148 RFGENHAIMGVAFTWVMALACAAPPLV-GWSRYIPEGMQCSCGIDYYTPHEETNNESFVI 206

Query: 62  FMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIA 121
           +MF++ + IP+ +I   Y Q+V  V       +E A                  AE  + 
Sbjct: 207 YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQ--------------KAEKEVT 252

Query: 122 KTAITLCALFVASWTPYAVVALTGAFGDQ 150
           +  I +   F+  W PYA VA        
Sbjct: 253 RMVIIMVIAFLICWLPYAGVAFYIFTHQG 281

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 23/153 (15%)

Query: 4   RMSYSKALMILILI----YCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESI--R 57
           R+S +   +++ +I         P   +      S          C  ++      I  +
Sbjct: 141 RLSATATKVVICVIWVLALLLAFPQGYY------STTETMPSRVVCMIEWPEHPNKIYEK 194

Query: 58  FYVLFMFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAE 117
            Y + + ++ Y +P+ +I   Y+ +   +               +    S +   Q SA+
Sbjct: 195 VYHICVTVLIYFLPLLVIGYAYTVVGITL-----------WASEIPGDSSDRYHEQVSAK 243

Query: 118 VRIAKTAITLCALFVASWTPYAVVALTGAFGDQ 150
            ++ K  I +   F   W P+ +  L       
Sbjct: 244 RKVVKMMIVVVCTFAICWLPFHIFFLLPYINPD 276

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 20/157 (12%), Positives = 53/157 (33%), Gaps = 11/157 (7%)

Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
            ++ +KA +I+++++      +  P    W R   +  +     +      + + Y +  
Sbjct: 293 LLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIAS 352

Query: 64  FIICYCIPMGMIINFYSQI-----------VGHVFSHEKALREQAKKMNVESLRSGQKEG 112
            I+ + +P+ +++  YS++                        Q ++         +   
Sbjct: 353 SIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSK 412

Query: 113 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGD 149
               E +  KT   +   F   W P+ +V +     D
Sbjct: 413 FCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD 449

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 8/146 (5%)

Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFM 63
            M+ ++A +I+  ++      +  P +  W R      L            + R Y +  
Sbjct: 122 LMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIAS 181

Query: 64  FIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKT 123
            II + IP+ ++I    ++        + +   +K+     +   +         +  KT
Sbjct: 182 SIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREH--------KALKT 233

Query: 124 AITLCALFVASWTPYAVVALTGAFGD 149
              +  +F   W P+ +V +   F  
Sbjct: 234 LGIIMGVFTLCWLPFFLVNIVNVFNR 259

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 4   RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIR-FYVLF 62
           R +    +   IL     +P          +          CT  +  PT        + 
Sbjct: 131 RNAKIVNVCNWILSSAIGLPVMFM------ATTKYRQGSIDCTLTFSHPTWYWENLLKIC 184

Query: 63  MFIICYCIPMGMIINFYSQIVGHVFSHEKALREQAKKMNV 102
           +FI  + +P+ +I   Y  ++  + S             +
Sbjct: 185 VFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGL 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.87
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.83
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.83
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.82
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.81
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.8
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.8
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.79
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.79
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.78
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.78
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.78
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.77
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.74
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.73
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.73
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.71
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.66
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.97

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.87  E-value=1.4e-21  Score=147.63  Aligned_cols=85  Identities=14%  Similarity=0.054  Sum_probs=65.4

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhccccccceeecC-----CcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG-----YLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINF   78 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~   78 (150)
                      .++++++..+++++|++++++++|++++ ++......     ....|...++..  ....|..+..++.|++|+++|+++
T Consensus       148 ~~t~~~~~~~i~~~W~~s~~~~~p~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~--~~~~~~~~~~~~~f~iP~~ii~~~  224 (510)
T 4grv_A          148 LMSRSRTKKFISAIWLASALLAIPMLFT-MGLQNRSADGTHPGGLVCTPIVDTA--TVKVVIQVNTFMSFLFPMLVISIL  224 (510)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHHTTHHHH-EEEEECSSSSCCGGGEEEEECSCHH--HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             cccccccceeehHHHHHHHHHHHHHHHh-hcccccccCCCCCCccccccccccc--hhhhhhhhhhhHHHhhhHHHHHHH
Confidence            3899999999999999999999999987 65433221     233577665322  244567777788899999999999


Q ss_pred             HHHHHHHHHhcch
Q psy15243         79 YSQIVGHVFSHEK   91 (150)
Q Consensus        79 y~~I~~~l~~~~~   91 (150)
                      |.+|++.++++.+
T Consensus       225 Y~~I~~~l~~~~~  237 (510)
T 4grv_A          225 NTVIANKLTVMVN  237 (510)
T ss_dssp             HHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.83  E-value=6.8e-20  Score=136.79  Aligned_cols=89  Identities=12%  Similarity=0.130  Sum_probs=68.5

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeec-CCcceEEEeecCCCc--chhhhHHHHHHHHHHHhHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPE-GYLTSCTFDYLTPTE--SIRFYVLFMFIICYCIPMGMIINFYSQ   81 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~~C~~~~~~~~~--~~~~y~~~~~~~~~~ipl~ii~~~y~~   81 (150)
                      ++++++..+++++|++++++++|++++ +.....+ .....|...+..+..  ....|..+..++.|++|+++++++|..
T Consensus       132 ~t~~~~~~~i~~~W~~s~~~~~p~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~  210 (484)
T 3vw7_A          132 RTLGRASFTCLAIWALAIAGVVPLLLK-EQTIQVPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVS  210 (484)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTS-CCEEEETTTTEEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCCceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            788999999999999999999999987 6554433 344578777655432  122255666678899999999999999


Q ss_pred             HHHHHHhcchHHH
Q psy15243         82 IVGHVFSHEKALR   94 (150)
Q Consensus        82 I~~~l~~~~~~~~   94 (150)
                      |++.++++.++.+
T Consensus       211 I~~~l~~~~~~~~  223 (484)
T 3vw7_A          211 IIRCLSSSANIFE  223 (484)
T ss_dssp             HHHHTTSCCCHHH
T ss_pred             HHHHHhHhhHHHH
Confidence            9999999886443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.83  E-value=4.7e-20  Score=136.93  Aligned_cols=142  Identities=35%  Similarity=0.699  Sum_probs=109.5

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      +++++++..+++++|+++++++++++++ ++.+..+.....|..++...+.....|.....++.+++|+++++++|..|+
T Consensus       146 ~~~~~~~~~~i~~~W~~s~~~~~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~  224 (448)
T 2z73_A          146 KMSHRRAFIMIIFVWLWSVLWAIGPIFG-WGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIV  224 (448)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHSGGGGT-SSCEEECTTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             eechhHHHHHHHHHHHHHHHHHHHHHhc-eeeeeecCCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999998 877776666677988876554334566677777889999999999999999


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      +.++++.+++.+..++.+...  .++.+...++|+|++|++++++++|++||+|+.+..++..++
T Consensus       225 ~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~  287 (448)
T 2z73_A          225 MSVSNHEKEMAAMAKRLNAKE--LRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFG  287 (448)
T ss_dssp             TTHHHHHHHHHHHHTTTCCTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhhhHH--HHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            999998776654432211110  000112234688999999999999999999999999887664

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.82  E-value=7.7e-20  Score=137.07  Aligned_cols=87  Identities=7%  Similarity=0.085  Sum_probs=68.2

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIVG   84 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~~   84 (150)
                      ++++++..+++++|++++++++|+++. + ......+...|...++.... ...|.+...++.+++|+++++++|..|++
T Consensus       158 ~~~~~~~~~i~~~W~~~~~~~~~~~~~-~-~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~p~~ii~~~y~~I~~  234 (502)
T 3odu_A          158 RKLLAEKVVYVGVWIPALLLTIPDFIF-A-NVSEADDRYICDRFYPNDLW-VVVFQFQHIMVGLILPGIVILSCYCIIIS  234 (502)
T ss_dssp             HHHHHHTHHHHHTHHHHHHTTHHHHHH-E-EEEECSSSEEEEECCSSHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHh-e-eeeccCCceEEeecCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788899999999999999998874 3 44445556679877654432 44566667778899999999999999999


Q ss_pred             HHHhcchHHH
Q psy15243         85 HVFSHEKALR   94 (150)
Q Consensus        85 ~l~~~~~~~~   94 (150)
                      .++++.++..
T Consensus       235 ~l~~~~~~~~  244 (502)
T 3odu_A          235 KLSHSGSNIF  244 (502)
T ss_dssp             HGGGCSCCHH
T ss_pred             HHhhcccchh
Confidence            9999766543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.81  E-value=4.6e-19  Score=134.15  Aligned_cols=79  Identities=15%  Similarity=0.320  Sum_probs=61.8

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      +++++++..+++++|++++++++||+++ |+.+   .+...|...++..   ...|.++. ++.|++|+++|+++|.+|+
T Consensus       172 ~~t~~~~~~~i~~~W~~s~~~~~~~~~~-~~~~---~~~~~C~~~~~~~---~~~~~~~~-~~~~~lPl~ii~~~Y~~I~  243 (520)
T 3v2y_A          172 GSNNFRLFLLISACWVISLILGGLPIMG-WNCI---SALSSCSTVLPLY---HKHYILFC-TTVFTLLLLSIVILYCRIY  243 (520)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHTTTTT-CBCT---TCGGGBCSSSTTB---BHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHe-eccc---cCCCcccccCCcc---chHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999998 8765   3445797765422   33455444 4569999999999999999


Q ss_pred             HHHHhcc
Q psy15243         84 GHVFSHE   90 (150)
Q Consensus        84 ~~l~~~~   90 (150)
                      +.++++.
T Consensus       244 ~~l~~~~  250 (520)
T 3v2y_A          244 SLVRTRN  250 (520)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            9998875

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.80  E-value=4.1e-19  Score=131.73  Aligned_cols=88  Identities=13%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCc-chhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTE-SIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      ++++++..+++++|++++++++|+++  +....+..+...|...+...+. ....|..+..++.+++|+++++++|..|+
T Consensus       128 ~~~~~~~~~~~~~W~~~~~~~~p~~~--~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~  205 (464)
T 4dkl_A          128 RTPRNAKIVNVCNWILSSAIGLPVMF--MATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMI  205 (464)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH--SBCCEEETTEEECCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccHhHHhHHHHHHHHHHHHHHHHH--heeecccCCCceEEeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999887  4444555566678777654432 13346667777889999999999999999


Q ss_pred             HHHHhcchHHH
Q psy15243         84 GHVFSHEKALR   94 (150)
Q Consensus        84 ~~l~~~~~~~~   94 (150)
                      +.++++.++.+
T Consensus       206 ~~l~~~~~~~~  216 (464)
T 4dkl_A          206 LRLKSVRNIFE  216 (464)
T ss_dssp             HHCCCCCSHHH
T ss_pred             HHHHHhcchhh
Confidence            99998776443

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.80  E-value=4.9e-19  Score=133.35  Aligned_cols=86  Identities=14%  Similarity=0.298  Sum_probs=61.9

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhc-cccccceeecCCcceEEEeecC-CCcchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPY-LEKWSRFVPEGYLTSCTFDYLT-PTESIRFYVLFMFIICYCIPMGMIINFYSQI   82 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I   82 (150)
                      ++++++..+++++|+++++++++|+ ++ |.... ......|...+.. +......|.++..++.|++|+++++++|.+|
T Consensus       152 ~t~~~~~~~i~~~W~~s~~~~~~p~~~~-~~~~~-~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I  229 (500)
T 2rh1_A          152 LTKNKARVIILMVWIVSGLTSFLPIQMH-WYRAT-HQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV  229 (500)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCC-SHHHHHHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ecccceeehhhHHHHHHHHHHhcchhee-eeccc-ccCcceecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999986554 44 54332 1222245443321 1122456777778888999999999999999


Q ss_pred             HHHHHhcchH
Q psy15243         83 VGHVFSHEKA   92 (150)
Q Consensus        83 ~~~l~~~~~~   92 (150)
                      ++.+++|.++
T Consensus       230 ~~~l~~~~~~  239 (500)
T 2rh1_A          230 FQEAKRQLNI  239 (500)
T ss_dssp             HHHHHHHCSH
T ss_pred             HHHHHHHHHH
Confidence            9999988665

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.79  E-value=8.3e-19  Score=129.83  Aligned_cols=85  Identities=16%  Similarity=0.411  Sum_probs=62.6

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhccccccceeecC---CcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG---YLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYS   80 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~---~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~   80 (150)
                      .++++++..+++++|++++++++|.+ + ++.+..+.   ....|..++..    ...|..+..++.+++|+++++++|.
T Consensus       119 ~~~~~~~~~~i~~~W~~~~~~~~p~~-~-~~~~~~~~~~~~~~~C~~~~~~----~~~~~~~~~~~~~~~p~~ii~~~y~  192 (452)
T 3rze_A          119 YRTKTRASATILGAWFLSFLWVIPIL-G-WNHFMQQTSVRREDKCETDFYD----VTWFKVMTAIINFYLPTLLMLWFYA  192 (452)
T ss_dssp             TSSHHHHHHHHHHHHHHHGGGHHHHH-C-CCC-------CCSSSSCCSCTT----CHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHH-H-HHhcccccccCCCCeecCCCcc----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999988754 3 65554332   34467655432    3347777778889999999999999


Q ss_pred             HHHHHHHhcchHHH
Q psy15243         81 QIVGHVFSHEKALR   94 (150)
Q Consensus        81 ~I~~~l~~~~~~~~   94 (150)
                      .|++.++++.++..
T Consensus       193 ~I~~~l~~~~~~~~  206 (452)
T 3rze_A          193 KIYKAVRQHCNIFE  206 (452)
T ss_dssp             HHHHHSCCCCCHHH
T ss_pred             HHHHHHHHhccHHH
Confidence            99999998866543

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.79  E-value=4.7e-19  Score=131.62  Aligned_cols=86  Identities=13%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhcccccccee--ecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFV--PEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQ   81 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~--~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~   81 (150)
                      .++++++..+++++|++++++++|++++ ++.+.  ...+...|..++..    ...|..+..++.|++|+++++++|..
T Consensus       134 ~~~~~~~~~~i~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~C~~~~~~----~~~~~~~~~~~~~~~p~~ii~~~y~~  208 (467)
T 3uon_A          134 KRTTKMAGMMIAAAWVLSFILWAPAILF-WQFIVGVRTVEDGECYIQFFS----NAAVTFGTAIAAFYLPVIIMTVLYWH  208 (467)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCCCSSCCCCGGGG----SHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccCCCCCcceeecCc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3788999999999999999999999886 65432  22334468766532    33577777788899999999999999


Q ss_pred             HHHHHHhcchHHH
Q psy15243         82 IVGHVFSHEKALR   94 (150)
Q Consensus        82 I~~~l~~~~~~~~   94 (150)
                      |++.++++.++.+
T Consensus       209 I~~~l~~~~~~~~  221 (467)
T 3uon_A          209 ISRASKSRINIFE  221 (467)
T ss_dssp             HHHHHTTCCCHHH
T ss_pred             HHHHHHHhhhHHH
Confidence            9999999876443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.78  E-value=7.1e-19  Score=126.16  Aligned_cols=129  Identities=28%  Similarity=0.520  Sum_probs=103.2

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCC--cchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPT--ESIRFYVLFMFIICYCIPMGMIINFYSQI   82 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~y~~~~~~~~~~ipl~ii~~~y~~I   82 (150)
                      ++++++...++++|+.+++.++|++++ ++.+.++.....|..++....  .....|.....++.+++|+++++++|.+|
T Consensus       149 ~~~~~~~~~i~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i  227 (349)
T 1u19_A          149 FGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL  227 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSGGGTT-SSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTT
T ss_pred             eccchhHHHHHHHHHHHHHHHHHHHHh-eeeeeccCCceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999998 877777666778988775432  12456777777788999999999999999


Q ss_pred             HHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         83 VGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      ++.++++.++.              .+++.+.++|+|+++++++++++|++||+|+.+..++..+.
T Consensus       228 ~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~  279 (349)
T 1u19_A          228 VFTVKEAAAQQ--------------QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH  279 (349)
T ss_dssp             TTSSCSCCCSS--------------CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhh--------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheec
Confidence            99998775421              11223346788999999999999999999999988876654

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.78  E-value=1.7e-18  Score=129.18  Aligned_cols=91  Identities=14%  Similarity=0.301  Sum_probs=65.0

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhccccccceeecC----CcceEEEeecC----CCcchhhhHHHHHHHHHHHhHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEG----YLTSCTFDYLT----PTESIRFYVLFMFIICYCIPMGMI   75 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~----~~~~C~~~~~~----~~~~~~~y~~~~~~~~~~ipl~ii   75 (150)
                      .++++++..+++++|++++++++|++++ ++.+....    ....|...+..    +......|..+..++.+++|++++
T Consensus       130 ~~~~~~~~~~i~~~W~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii  208 (488)
T 3eml_A          130 LVTGTRAKGIIAICWVLSFAIGLTPMLG-WNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLM  208 (488)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTGGGT-CCSSCC-------CCSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccccccccccccccccceeeccccccchhHHHhHHHHHHHHHHHHH
Confidence            3789999999999999999999999998 76655432    12235433211    111123355555678899999999


Q ss_pred             HHHHHHHHHHHHhcchHHHH
Q psy15243         76 INFYSQIVGHVFSHEKALRE   95 (150)
Q Consensus        76 ~~~y~~I~~~l~~~~~~~~~   95 (150)
                      +++|..|++.++++.++.+.
T Consensus       209 ~~~y~~I~~~l~~~~~~~~~  228 (488)
T 3eml_A          209 LGVYLRIFLAARRQLNIFEM  228 (488)
T ss_dssp             HHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHh
Confidence            99999999999998776543

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.78  E-value=2e-18  Score=124.71  Aligned_cols=134  Identities=16%  Similarity=0.265  Sum_probs=101.3

Q ss_pred             CCcccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCc--chhhhHHHHHHHHHHHhHHHHHHHH
Q psy15243          2 DGRMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTE--SIRFYVLFMFIICYCIPMGMIINFY   79 (150)
Q Consensus         2 ~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~--~~~~y~~~~~~~~~~ipl~ii~~~y   79 (150)
                      +.+.+++++..+++++|+.++++++|++.  +.....+++...|..+|+....  ....|.....++.+++|+++++++|
T Consensus       139 ~~~~~~~~~~~~i~~~W~~s~~~~~p~~~--~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y  216 (364)
T 2ks9_A          139 QPRLSATATKVVICVIWVLALLLAFPQGY--YSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAY  216 (364)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHHTTTTT--TSCCCBCTTCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHhHHHH--HhhheecCCCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578889999999999999999988765  5555555556679887765431  2346777777788999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         80 SQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        80 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      ..|.+.++++.++.           ..+...+++.++|+|+++++++++++|++||+|+.+..++..++
T Consensus       217 ~~i~~~l~~~~~~~-----------~~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~  274 (364)
T 2ks9_A          217 TVVGITLWASEIPG-----------DSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYIN  274 (364)
T ss_dssp             HHHHHSSCSCCCSS-----------SSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCCC-----------CcchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999998764321           01111223346788999999999999999999999998887664

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.77  E-value=6.6e-18  Score=125.95  Aligned_cols=78  Identities=12%  Similarity=0.322  Sum_probs=62.7

Q ss_pred             cccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          4 RMSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPTESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      +.+++++..+++++|++++++++|++++ ++..   .+...|...       ...|.....++.+++|+++++++|..|+
T Consensus       153 ~~~~~~~~~~i~~~W~~~~~~~~~~~~~-~~~~---~~~~~C~~~-------~~~~~~~~~~~~~~ip~~ii~~~y~~i~  221 (481)
T 3pbl_A          153 QSSCRRVALMITAVWVLAFAVSCPLLFG-FNTT---GDPTVCSIS-------NPDFVIYSSVVSFYLPFGVTVLVYARIY  221 (481)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTT-TCCC---SSTTCCSCC-------CHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhe-eccc---CCCCccccc-------CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999987 6543   333457554       3346677778889999999999999999


Q ss_pred             HHHHhcchH
Q psy15243         84 GHVFSHEKA   92 (150)
Q Consensus        84 ~~l~~~~~~   92 (150)
                      +.++++.++
T Consensus       222 ~~l~~~~~~  230 (481)
T 3pbl_A          222 VVLKQRRRK  230 (481)
T ss_dssp             HHHHCCCCC
T ss_pred             HHHHHhhhh
Confidence            999987654

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.74  E-value=1.6e-18  Score=122.49  Aligned_cols=136  Identities=16%  Similarity=0.219  Sum_probs=95.1

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCC-cchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPT-ESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~-~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      ++++++..+++++|+.++++++||.+. ......+.+...|..++...+ .....|.....++.+++|+++++++|.+|+
T Consensus       123 ~~~~~~~~~i~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~  201 (315)
T 4amj_A          123 MTRARAKVIICTVWAISALVSFLPIMM-HWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY  201 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHT-TTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHhhhHHHHHHHHHHHHHHHH-HhccccCCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999888775 333322223334544433211 235567777777889999999999999999


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGD  149 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~~  149 (150)
                      +.++++.++.++..+        ++.++...++|+|+++++++++++|++||+|+++..++..+++
T Consensus       202 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~  259 (315)
T 4amj_A          202 REAKEQIRKIDRASK--------RKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR  259 (315)
T ss_dssp             HHHHTC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhccCcccc--------cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999988765432111        1112223457889999999999999999999999999887653

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.73  E-value=1.7e-17  Score=125.27  Aligned_cols=143  Identities=14%  Similarity=0.265  Sum_probs=94.8

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecC-CCcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLT-PTESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      ++++++..+++++|+++++++++|.+..+..... .+...|...... +......|.....++.+++|+++++++|.+|+
T Consensus       294 ~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~-~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~  372 (514)
T 3sn6_R          294 LTKNKARVIILMVWIVSGLTSFLPIQMHWYRATH-QEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVF  372 (514)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC----CHHHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhhhhccceeccc-CcccceeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999987666421433322 222234322211 11235568788888899999999999999999


Q ss_pred             HHHHhcchHHHHHHHhhccc-----------ccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         84 GHVFSHEKALREQAKKMNVE-----------SLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      +.++++.++.+...+.....           ....+.+++..++++|+++++++++++|++||+|+.++.++..++
T Consensus       373 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~  448 (514)
T 3sn6_R          373 QEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ  448 (514)
T ss_dssp             HHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99998877654432110000           000011222345789999999999999999999999999887664

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.73  E-value=1.3e-18  Score=128.57  Aligned_cols=89  Identities=16%  Similarity=0.318  Sum_probs=61.6

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCC----cceEEEeecCC----CcchhhhHHHHHHHHHHHhHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGY----LTSCTFDYLTP----TESIRFYVLFMFIICYCIPMGMII   76 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~----~~~C~~~~~~~----~~~~~~y~~~~~~~~~~ipl~ii~   76 (150)
                      ++++++..+++++|++++++++|++++ ++.+.....    ...|...+...    ......|..+..++.+++|+++++
T Consensus       141 ~~~~~~~~~i~~~Wi~s~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~  219 (447)
T 4eiy_A          141 VTGTRAKGIIAICWVLSFAIGLTPMLG-WNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLML  219 (447)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTGGGGT-CSSTTSCCHHHHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHH
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHhhhhe-eccccccCccccccccccccchhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999997 765443221    12344332111    111222333334556899999999


Q ss_pred             HHHHHHHHHHHhcchHHH
Q psy15243         77 NFYSQIVGHVFSHEKALR   94 (150)
Q Consensus        77 ~~y~~I~~~l~~~~~~~~   94 (150)
                      ++|.+|++.++++.++.+
T Consensus       220 ~~y~~I~~~l~~~~~~~~  237 (447)
T 4eiy_A          220 GVYLRIFLAARRQLADLE  237 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            999999999999876554

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.66  E-value=3.9e-16  Score=110.02  Aligned_cols=120  Identities=11%  Similarity=0.211  Sum_probs=88.2

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCC-CcchhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTP-TESIRFYVLFMFIICYCIPMGMIINFYSQIV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~y~~~~~~~~~~ipl~ii~~~y~~I~   83 (150)
                      ..++++..+++++|+.+++.++|+..+ ++....+.....|...+... ......|........+++|+.++..+|..+.
T Consensus       120 ~~~~~~~~~~~~~W~~s~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~  198 (296)
T 2lnl_A          120 QKRHLVKFVCLGCWGLSMNLSLPFFLF-RQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTL  198 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCCCCCTTSCCCCSCCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhHheehHHHHHHHHHhcchhhc-ceeecCCCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888999999999998886 65555444433333322222 2224456666677889999999999999887


Q ss_pred             HHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         84 GHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      +.++++                       +.++|+|++|++..++++|++||+|+++..++..+.
T Consensus       199 ~~~~~~-----------------------~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~  240 (296)
T 2lnl_A          199 RTLFKA-----------------------HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLM  240 (296)
T ss_dssp             TTSSSC-----------------------CCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH-----------------------hhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHh
Confidence            655432                       235678899999999999999999999999887654

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.97  E-value=1.7e-11  Score=58.37  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243        118 VRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus       118 ~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      +|++|++++++++|++||+||++..++..++
T Consensus         2 ~k~~k~l~~vv~~F~icW~P~~i~~~~~~~~   32 (33)
T 2ki9_A            2 VRLAKTLGLVLAVLLICWFPVLALMAHSLAT   32 (33)
T ss_dssp             CSSSSHHHHHHHHHTTTSSHHHHHHTTTTCC
T ss_pred             chhhhhHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence            4678899999999999999999999887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	0.004

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 17  IYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTP--TESIRFYVLFMFIICYCIPMGM 74
               +      P L  WSR++PEG   SC  DY TP    +   +V++MF++ + IP+ +
Sbjct: 159 FTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIV 218

Query: 75  IINFYSQIVGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVAS 134
           I   Y Q+V  V                   +  +      AE  + +  I +   F+  
Sbjct: 219 IFFCYGQLVFTVKEAAA--------------QQQESATTQKAEKEVTRMVIIMVIAFLIC 264

Query: 135 WTPYAVVALTGAFGD 149
           W PYA VA       
Sbjct: 265 WLPYAGVAFYIFTHQ 279

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.62

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=9.2e-16  Score=108.32  Aligned_cols=129  Identities=28%  Similarity=0.525  Sum_probs=99.0

Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhccccccceeecCCcceEEEeecCCC--cchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy15243          5 MSYSKALMILILIYCYVIPWAMFPYLEKWSRFVPEGYLTSCTFDYLTPT--ESIRFYVLFMFIICYCIPMGMIINFYSQI   82 (150)
Q Consensus         5 ~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~y~~~~~~~~~~ipl~ii~~~y~~I   82 (150)
                      .++++....++.+|..++++..|+.++ +.....+.....|...+....  .....|..+...+.+++|+++++++|.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i  226 (348)
T d1u19a_         148 FGENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL  226 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSGGGTT-SSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTT
T ss_pred             cccccccccceeeehhhhheecccccc-cceeccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788888888999999999998887 766666666666766544332  23445666777778899999999999999


Q ss_pred             HHHHHhcchHHHHHHHhhcccccccccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q psy15243         83 VGHVFSHEKALREQAKKMNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG  148 (150)
Q Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~f~icw~P~~i~~l~~~~~  148 (150)
                      .+.++++.++              ..++..+.++|+|++|++++++++|++||+||.+..++....
T Consensus       227 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~  278 (348)
T d1u19a_         227 VFTVKEAAAQ--------------QQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH  278 (348)
T ss_dssp             TTSSCSCCCS--------------SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Hhhhcccccc--------------cchhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeecc
Confidence            9888776432              112334456789999999999999999999999988876654