Psyllid ID: psy15244
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1427 | 2.2.26 [Sep-21-2011] | |||||||
| Q29RK2 | 1178 | Pyruvate carboxylase, mit | yes | N/A | 0.706 | 0.855 | 0.470 | 0.0 | |
| O17732 | 1175 | Pyruvate carboxylase 1 OS | yes | N/A | 0.702 | 0.852 | 0.478 | 0.0 | |
| P11498 | 1178 | Pyruvate carboxylase, mit | yes | N/A | 0.710 | 0.860 | 0.465 | 0.0 | |
| Q05920 | 1178 | Pyruvate carboxylase, mit | yes | N/A | 0.710 | 0.860 | 0.461 | 0.0 | |
| P52873 | 1178 | Pyruvate carboxylase, mit | yes | N/A | 0.710 | 0.860 | 0.461 | 0.0 | |
| Q9UUE1 | 1185 | Pyruvate carboxylase OS=S | yes | N/A | 0.735 | 0.885 | 0.413 | 0.0 | |
| P32327 | 1180 | Pyruvate carboxylase 2 OS | yes | N/A | 0.703 | 0.850 | 0.429 | 0.0 | |
| P11154 | 1178 | Pyruvate carboxylase 1 OS | no | N/A | 0.705 | 0.854 | 0.433 | 0.0 | |
| Q9HES8 | 1192 | Pyruvate carboxylase OS=A | yes | N/A | 0.704 | 0.843 | 0.427 | 0.0 | |
| O93918 | 1193 | Pyruvate carboxylase OS=A | N/A | N/A | 0.704 | 0.843 | 0.422 | 0.0 |
| >sp|Q29RK2|PYC_BOVIN Pyruvate carboxylase, mitochondrial OS=Bos taurus GN=PC PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/1137 (47%), Positives = 713/1137 (62%), Gaps = 129/1137 (11%)
Query: 43 VRRCGCKPPPPPKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQ 102
VRR KP ++K+++ANR E+AIRV RAC E+GI++V +YSEQD HR K D+
Sbjct: 29 VRRLEYKP------IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADE 82
Query: 103 AFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPA 162
A+L+G+G+ PV AYL+IP+II +AK NNVDA+HPGYGFLSER DFA+A AG+ FIGP+
Sbjct: 83 AYLIGRGLAPVQAYLHIPDIIKVAKENNVDAVHPGYGFLSERADFAQACQDAGVRFIGPS 142
Query: 163 PNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGR 222
P V++ +GDKV AR A+ A VP++PGT P+T + + EF + FP+I KAA+GGGGR
Sbjct: 143 PEVVRKMGDKVEARAIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGR 202
Query: 223 GMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE 282
GMR+V + + +EEN+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG+++HLYE
Sbjct: 203 GMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYE 262
Query: 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYF 342
RDCS+QRR+QKV++IAPA + +R +T SV+LAK +GY NAGTVEFL+D+ YF
Sbjct: 263 RDCSIQRRHQKVVEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYF 322
Query: 343 IEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTED 402
IEVN RLQVEHT++EEIT +D+V +QI +A+G+SL +LGL QE I GCAIQC + TED
Sbjct: 323 IEVNSRLQVEHTVTEEITDVDLVHAQIHVAEGRSLPDLGLRQENIRINGCAIQCRVTTED 382
Query: 403 PKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEK 462
P R+FQP TGR++VF +GIR+D++ + G ISP YDSLL K+I H + ++ K
Sbjct: 383 PARSFQPDTGRIEVFRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATK 442
Query: 463 MRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKI 522
M RAL E +V GV TN+PFL NV ++++FL+G ++T FID+NP+L + Q R K+
Sbjct: 443 MSRALAEFRVRGVKTNIPFLQNVLNNQQFLAG-TVDTQFIDENPELFQLRPAQN-RAQKL 500
Query: 523 LRFIGETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEK 582
L ++G +VNGP TP+ V P P TD
Sbjct: 501 LHYLGHVMVNGPTTPIPVKASP---SP---------------------------TDPIVP 530
Query: 583 YLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKV 642
+ P G+R +L G F VR + +LL DTTFRDAHQSLLATRVRT+DLK
Sbjct: 531 VVPIGPPPTGFRDILLREGPEGFARAVRNHEGLLLMDTTFRDAHQSLLATRVRTHDLK-- 588
Query: 643 MMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEM 702
K+SP+VA+ FN L+S+E
Sbjct: 589 ------------------------------------------KISPYVAHSFNKLFSIEN 606
Query: 703 WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLA 762
WGGA ++FL ECPW RL ELREL+PNIPFQM+LRG + VGY+NY V FC +A
Sbjct: 607 WGGATFDVAMRFLYECPWRRLQELRELVPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVA 666
Query: 763 SQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822
+ G+DIFRVFD LN +PNL+ GM+A G +VEA I Y GD+++P++ KYSL YY
Sbjct: 667 KENGMDIFRVFDSLNYLPNLLLGMEAAGSAGG---VVEAAISYTGDVSDPSRTKYSLQYY 723
Query: 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882
LA++LV +G +LC+KDMAGLLKPTA +L+ S R+++P++ +H+HTHD +G GVA
Sbjct: 724 MGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAM 783
Query: 883 LACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRE 942
LAC AGAD+VDVAADSMSG+ SQP+MG +V+C T G+ L V DYS YW
Sbjct: 784 LACAHAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTGVPLERVFDYSEYW----- 838
Query: 943 LYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECT-DLKAASSEAYLYEIPGGQYT 1001
R LYA F+CT +K+ +S+ Y EIPGGQYT
Sbjct: 839 --------------------------EGARGLYAAFDCTATMKSGNSDVYENEIPGGQYT 872
Query: 1002 NLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVM 1059
NL F+ S GL F++VK+AY AN +LGD+IK TPSSK+V DLA FM Q L+ +
Sbjct: 873 NLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNGLTRAEAE 932
Query: 1060 ENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI------M 1113
A+++ FP+SV EF QG IG P+ GFP+ L+ KVL L A P+
Sbjct: 933 AQAEELSFPRSVVEFLQGYIGIPHGGFPEPLRSKVLKDLPRVEGRPGASLPPLDLQALEK 992
Query: 1114 ACDYREDEPFK----MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFD 1166
R E ++ ++P F F FGP+D L TR+F + EF+
Sbjct: 993 ELTERHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFE 1049
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate. Bos taurus (taxid: 9913) EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 1 |
| >sp|O17732|PYC1_CAEEL Pyruvate carboxylase 1 OS=Caenorhabditis elegans GN=pyc-1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1128 (47%), Positives = 714/1128 (63%), Gaps = 126/1128 (11%)
Query: 54 PKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPV 113
P+ K+++ANR E+AIRV RA E+ SV IY+EQDK S HR K D+A+LVGKG+PPV
Sbjct: 29 PREFNKVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMHRLKADEAYLVGKGLPPV 88
Query: 114 AAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKV 173
AAYL I +II A +N+DAIHPGYGFLSER DFA A AG+ FIGP+P+V+ +GDKV
Sbjct: 89 AAYLTIDQIIETALKHNIDAIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKV 148
Query: 174 LARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAI 233
AR AA++A V ++PGT P+T D+ EF + P+ILKAA+GGGGRG+R V + +
Sbjct: 149 AARQAAIEAGVQVVPGTPGPITTADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLEEV 208
Query: 234 EENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293
EE F+R+ SEA A+FG + VEK+++RPRHIEVQ+LGD +G++VHLYERDCS+QRR+QK
Sbjct: 209 EEAFRRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYERDCSVQRRHQK 268
Query: 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEH 353
V++IAPA + VR+ I ++RLA+ +GY NAGTVEFL+D+ N+YFIEVN RLQVEH
Sbjct: 269 VVEIAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIEVNARLQVEH 328
Query: 354 TLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR 413
T++EEITG+D+VQ+QI+IA+GKSL +L L QE I G AIQC + TEDP + FQP +GR
Sbjct: 329 TVTEEITGVDLVQAQIRIAEGKSLDDLKLSQETIQTTGSAIQCRVTTEDPAKGFQPDSGR 388
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
++VF +GIR+DS+ + G ISP YDSL+ K+I + ++ KM RAL++ ++
Sbjct: 389 IEVFRSGEGMGIRLDSASAFAGSVISPHYDSLMVKVIASARNHPNAAAKMIRALKKFRIR 448
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFLLNV FL +++T FID++P+L + Q R K+L ++GE VNG
Sbjct: 449 GVKTNIPFLLNVLRQPSFLDA-SVDTYFIDEHPELFQFKPSQN-RAQKLLNYLGEVKVNG 506
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
P TPL ++KP V P I + KP G
Sbjct: 507 PTTPLATDLKPAVVSPPIPYIPAG----------------------------AKP-PTGL 537
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
R +L G EF VR ++TDTTFRDAHQSLLATRVRTY
Sbjct: 538 RDVLVQRGPTEFAKEVRSRPGCMITDTTFRDAHQSLLATRVRTY---------------- 581
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
D+ +SPFVA FN L+SLE WGGA ++
Sbjct: 582 ----------------------------DMAAISPFVAQSFNGLFSLENWGGATFDVSMR 613
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FL ECPWERL LR+LIPNIPFQ +LRG + +GYSNY + FC LA + G+D+FRVF
Sbjct: 614 FLHECPWERLQTLRKLIPNIPFQCLLRGANAMGYSNYPDNVIYKFCELAVKNGMDVFRVF 673
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
D LN +PNL+ GM+AV + G +VEA I Y GD+T+ ++ KY L YY +LA QLV++
Sbjct: 674 DSLNYLPNLLVGMEAVGKAGG---VVEAAIAYTGDVTDKSRDKYDLKYYLNLADQLVKAQ 730
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893
A +L +KDMAG+LKP AAKLLIG+ R+K+P+I IHVHTHD +G GVA L C KAGAD+V
Sbjct: 731 AHILSIKDMAGVLKPEAAKLLIGALRDKFPDIPIHVHTHDTSGAGVAAMLECAKAGADVV 790
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953
D A DSMSG+ SQP+MG IV+ L+ T G+ L D+ YS+YW R+L
Sbjct: 791 DAAVDSMSGMTSQPSMGAIVASLQGTKHDTGLSLDDISKYSAYWESTRQL---------- 840
Query: 954 CGIDLHDVCDYSSYWRKVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL 1012
YAPFEC T +K+ +++ Y +EIPGGQYTNL+F+ S GL
Sbjct: 841 ---------------------YAPFECATTMKSGNADVYKHEIPGGQYTNLQFQAFSLGL 879
Query: 1013 --DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKS 1070
F++VKR YR AN +LGDIIK TPSSK+V DLA FM Q L+ +++ AD + FPKS
Sbjct: 880 GPQFDEVKRMYREANLVLGDIIKVTPSSKIVGDLAQFMVQNNLTRETLVDRADDLSFPKS 939
Query: 1071 VTEFFQGSIGEPYQGFPKKLQEKVL-----------DSLKDHALER-KAEFDPIMACDYR 1118
V +F QG++G+P GFP+ L+ KVL ++ K L+ K E +
Sbjct: 940 VVDFMQGNVGQPPYGFPEPLRTKVLRGKPKVDGRPGENAKPVDLDAVKVELEEKHGRTLS 999
Query: 1119 EDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFD 1166
E++ M+ +FP +F FR ++GPVDKLPTR+F LE E D
Sbjct: 1000 EED--VMSYSMFPTVFDEFETFRQQYGPVDKLPTRLFLTGLEIAEEVD 1045
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial OS=Homo sapiens GN=PC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/1144 (46%), Positives = 713/1144 (62%), Gaps = 130/1144 (11%)
Query: 43 VRRCGCKPPPPP-------KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSA 95
+RR P P K ++K+++ANR E+AIRV RAC E+GI++V IYSEQD
Sbjct: 16 IRRTSTAPAASPNVRRLEYKPIKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQM 75
Query: 96 HRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAG 155
HR K D+A+L+G+G+ PV AYL+IP+II +AK NNVDA+HPGYGFLSER DFA+A AG
Sbjct: 76 HRQKADEAYLIGRGLAPVQAYLHIPDIIKVAKENNVDAVHPGYGFLSERADFAQACQDAG 135
Query: 156 LEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215
+ FIGP+P V++ +GDKV AR A+ A VP++PGT P+T + + EF + FP+I KA
Sbjct: 136 VRFIGPSPEVVRKMGDKVEARAIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKA 195
Query: 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275
A+GGGGRGMR+V + + +EEN+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG
Sbjct: 196 AYGGGGRGMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYG 255
Query: 276 DVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335
+++HLYERDCS+QRR+QKV++IAPA + +R +T SV+LAK +GY NAGTVEFL+D
Sbjct: 256 NILHLYERDCSIQRRHQKVVEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVD 315
Query: 336 KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQ 395
+ YFIEVN RLQVEHT++EEIT +D+V +QI +A+G+SL +LGL QE I GCAIQ
Sbjct: 316 RHGKHYFIEVNSRLQVEHTVTEEITDVDLVHAQIHVAEGRSLPDLGLRQENIRINGCAIQ 375
Query: 396 CHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455
C + TEDP R+FQP TGR++VF +GIR+D++ + G ISP YDSLL K+I H
Sbjct: 376 CRVTTEDPARSFQPDTGRIEVFRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKD 435
Query: 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQ 515
+ ++ KM RAL E +V GV TN+ FL NV ++++FL+G ++T FID+NP+L + Q
Sbjct: 436 HPTAATKMSRALAEFRVRGVKTNIAFLQNVLNNQQFLAG-TVDTQFIDENPELFQLRPAQ 494
Query: 516 TCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKI 575
R K+L ++G +VNGP TP+ V P DPV+
Sbjct: 495 N-RAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVP-------------------- 533
Query: 576 RTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVR 635
I P A G+R +L G F VR +LL DTTFRDAHQSLLATRVR
Sbjct: 534 ---------IGPPPA-GFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVR 583
Query: 636 TYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFN 695
T+DLK K++P+VA+ F+
Sbjct: 584 THDLK--------------------------------------------KIAPYVAHNFS 599
Query: 696 NLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755
L+S+E WGGA ++FL ECPW RL ELRELIPNIPFQM+LRG + VGY+NY V
Sbjct: 600 KLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVV 659
Query: 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815
FC +A + G+D+FRVFD LN +PN++ GM+A G +VEA I Y GD+ +P++
Sbjct: 660 FKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGG---VVEAAISYTGDVADPSRT 716
Query: 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMA 875
KYSL YY LA++LV +G +LC+KDMAGLLKPTA +L+ S R+++P++ +H+HTHD +
Sbjct: 717 KYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTS 776
Query: 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSS 935
G GVA LAC +AGAD+VDVAADSMSG+ SQP+MG +V+C T + + V DYS
Sbjct: 777 GAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSE 836
Query: 936 YWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECT-DLKAASSEAYLYE 994
YW R LYA F+CT +K+ +S+ Y E
Sbjct: 837 YW-------------------------------EGARGLYAAFDCTATMKSGNSDVYENE 865
Query: 995 IPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052
IPGGQYTNL F+ S GL F++VK+AY AN +LGD+IK TPSSK+V DLA FM Q
Sbjct: 866 IPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNG 925
Query: 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI 1112
LS + A+++ FP+SV EF QG IG P+ GFP+ + KVL L A P+
Sbjct: 926 LSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPL 985
Query: 1113 -------MACDYREDEPFK---MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERK 1162
D +E ++ ++P F F FGP+D L TR+F +
Sbjct: 986 DLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIA 1045
Query: 1163 AEFD 1166
EF+
Sbjct: 1046 EEFE 1049
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial OS=Mus musculus GN=Pc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1144 (46%), Positives = 713/1144 (62%), Gaps = 130/1144 (11%)
Query: 43 VRRCGCKPPPPP-------KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSA 95
VRR P P K ++K+++ANR E+AIRV RAC E+GI++V +YSEQD
Sbjct: 16 VRRSSSAPVASPNVRRLEYKPIKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQM 75
Query: 96 HRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAG 155
HR K D+A+L+G+G+ PV AYL+IP+II +AK N VDA+HPGYGFLSER DFA+A AG
Sbjct: 76 HRQKADEAYLIGRGLAPVQAYLHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAG 135
Query: 156 LEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215
+ FIGP+P V++ +GDKV AR A+ A VP++PGT P++ + + EF + FP+I KA
Sbjct: 136 VRFIGPSPEVVRKMGDKVEARAIAIAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKA 195
Query: 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275
A+GGGGRGMR+V + + +EEN+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG
Sbjct: 196 AYGGGGRGMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYG 255
Query: 276 DVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335
+++HLYERDCS+QRR+QKV++IAPA + +R +T SV+LAK +GY NAGTVEFL+D
Sbjct: 256 NILHLYERDCSIQRRHQKVVEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVD 315
Query: 336 KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQ 395
K YFIEVN RLQVEHT++EEIT +D+V +QI +++G+SL +LGL QE I GCAIQ
Sbjct: 316 KHGKHYFIEVNSRLQVEHTVTEEITDVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQ 375
Query: 396 CHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455
C + TEDP R+FQP TGR++VF +GIR+D++ + G ISP YDSLL K+I H
Sbjct: 376 CRVTTEDPARSFQPDTGRIEVFRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKD 435
Query: 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQ 515
+ ++ KM RAL E +V GV TN+PFL NV ++++FL+G ++T FID+NP+L + Q
Sbjct: 436 HPTAATKMSRALAEFRVRGVKTNIPFLQNVLNNQQFLAG-TVDTQFIDENPELFQLRPAQ 494
Query: 516 TCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKI 575
R K+L ++G +VNGP TP+ VNV S
Sbjct: 495 N-RAQKLLHYLGHVMVNGPTTPIPVNV------------------------------SPS 523
Query: 576 RTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVR 635
D + P G+R +L G F VR + +LL DTTFRDAHQSLLATRVR
Sbjct: 524 PVDPAVPVVPIGPPPAGFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVR 583
Query: 636 TYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFN 695
T+DLK K++P+VA+ FN
Sbjct: 584 THDLK--------------------------------------------KIAPYVAHNFN 599
Query: 696 NLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755
L+S+E WGGA ++FL ECPW RL ELRELIPNIPFQM+LRG + VGY+NY V
Sbjct: 600 KLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVV 659
Query: 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815
FC +A + G+D+FRVFD LN +PN++ GM+A G +VEA I Y GD+ +P++
Sbjct: 660 FKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGG---VVEAAISYTGDVADPSRT 716
Query: 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMA 875
KYSL YY LA++LV +G +LC+KDMAGLLKP A +L+ S R+++P++ +H+HTHD +
Sbjct: 717 KYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTS 776
Query: 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSS 935
G GVA LAC +AGAD+VDVA DSMSG+ SQP+MG +V+C + T + L V DYS
Sbjct: 777 GAGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSE 836
Query: 936 YWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECT-DLKAASSEAYLYE 994
YW R LYA F+CT +K+ +S+ Y E
Sbjct: 837 YW-------------------------------EGARGLYAAFDCTATMKSGNSDVYENE 865
Query: 995 IPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052
IPGGQYTNL F+ S GL F++VK+AY AN +LGD+IK TPSSK+V DLA FM Q
Sbjct: 866 IPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNG 925
Query: 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI 1112
LS + A+++ FP+SV EF QG IG P+ GFP+ + KVL L A P+
Sbjct: 926 LSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPL 985
Query: 1113 MACDYREDEPFK----------MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERK 1162
+ +D + ++ ++P +F F FGP+D L TR+F +
Sbjct: 986 NLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIA 1045
Query: 1163 AEFD 1166
EF+
Sbjct: 1046 EEFE 1049
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial OS=Rattus norvegicus GN=Pc PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1144 (46%), Positives = 716/1144 (62%), Gaps = 130/1144 (11%)
Query: 43 VRRCGCKPPPPP-------KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSA 95
VRR P P K ++K+++ANR E+AIRV RAC E+GI++V +YSEQD
Sbjct: 16 VRRSSTAPVASPNVRRLEYKPIKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQM 75
Query: 96 HRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAG 155
HR K D+A+L+G+G+ PV AYL+IP+II +AK N VDA+HPGYGFLSER DFA+A AG
Sbjct: 76 HRQKADEAYLIGRGLAPVQAYLHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAG 135
Query: 156 LEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215
+ FIGP+P V++ +GDKV AR A+ A VP++PGT P+ + + EF + FP+I KA
Sbjct: 136 VRFIGPSPEVVRKMGDKVEARAIAIAAGVPVVPGTNSPINSLHEAHEFSNTYGFPIIFKA 195
Query: 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275
A+GGGGRGMR+V + + +EEN+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG
Sbjct: 196 AYGGGGRGMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYG 255
Query: 276 DVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335
+++HLYERDCS+QRR+QKV++IAPA + +R +T SV+LAK +GY NAGTVEFL+D
Sbjct: 256 NILHLYERDCSIQRRHQKVVEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVD 315
Query: 336 KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQ 395
K YFIEVN RLQVEHT++EEIT +D+V +QI +++G+SL +LGL QE I GCAIQ
Sbjct: 316 KHGKHYFIEVNSRLQVEHTVTEEITDVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQ 375
Query: 396 CHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455
C + TEDP R+FQP TGR++VF +GIR+D++ + G ISP YDSLL K+I H
Sbjct: 376 CRVTTEDPARSFQPDTGRIEVFRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKD 435
Query: 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQ 515
+ ++ KM RAL E +V GV TN+PFL NV ++++FL+G ++T FID+NP+L + Q
Sbjct: 436 HPTAATKMSRALAEFRVRGVKTNIPFLQNVLNNQQFLAG-IVDTQFIDENPELFQLRPAQ 494
Query: 516 TCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKI 575
R K+L ++G +VNGP TP+ V V P VDP++ +
Sbjct: 495 N-RAQKLLHYLGHVMVNGPTTPIPVKVSPSPVDPIVPVVPIGPPPA-------------- 539
Query: 576 RTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVR 635
G+R +L G F VR + +LL DTTFRDAHQSLLATRVR
Sbjct: 540 ----------------GFRDILLREGPEGFARAVRNHQGLLLMDTTFRDAHQSLLATRVR 583
Query: 636 TYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFN 695
T+DLK K++P+VA+ FN
Sbjct: 584 THDLK--------------------------------------------KIAPYVAHNFN 599
Query: 696 NLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755
NL+S+E WGGA ++FL ECPW RL ELRELIPNIPFQM+LRG + VGY+NY V
Sbjct: 600 NLFSIENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVV 659
Query: 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815
FC +A + G+D+FR+FD LN +PN++ GM+A G +VEA I Y GD+ +P++
Sbjct: 660 FKFCEVAKENGMDVFRIFDSLNYLPNMLLGMEAAGSAGG---VVEAAISYTGDVADPSRT 716
Query: 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMA 875
KYSL YY LA++LV +G +LC+KDMAGLLKP A +L+ S R+++P++ +H+HTHD +
Sbjct: 717 KYSLEYYMGLAEELVRAGTHILCIKDMAGLLKPAACTMLVSSLRDRFPDLPLHIHTHDTS 776
Query: 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSS 935
G+GVA LAC +AGAD+VDVA DSMSG+ SQP+MG +V+C + T + L V DYS
Sbjct: 777 GSGVAAMLACAQAGADVVDVAVDSMSGMTSQPSMGALVACTKGTPLDTEVPLERVFDYSE 836
Query: 936 YWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECT-DLKAASSEAYLYE 994
YW R LYA F+CT +K+ +S+ Y E
Sbjct: 837 YW-------------------------------EGARGLYAAFDCTATMKSGNSDVYENE 865
Query: 995 IPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052
IPGGQYTNL F+ S GL F++VK+AY AN +LGD+IK TPSSK+V DLA FM Q
Sbjct: 866 IPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFMVQNG 925
Query: 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI 1112
LS + A+++ FP+SV EF QG IG P+ GFP+ + KVL L A P+
Sbjct: 926 LSRAEAEAQAEELSFPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPL 985
Query: 1113 MACDYREDEPFK----------MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERK 1162
+ +D + ++ ++P +F F FGP+D L TR+F +
Sbjct: 986 NLKELEKDLIDRHGEEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIA 1045
Query: 1163 AEFD 1166
EF+
Sbjct: 1046 EEFE 1049
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9UUE1|PYC_SCHPO Pyruvate carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pyr1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/1202 (41%), Positives = 715/1202 (59%), Gaps = 153/1202 (12%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGK--GMPPVAAY 116
K+L+ANRSE+AIRV R +E+ + +V IYS +D+ S HR K D+++ +GK PV AY
Sbjct: 35 KVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQKADESYPIGKVGQYSPVGAY 94
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L I EI+ IAK + +HPGYGFLSE +FA+ V AG++F+GP+P V+ +LGDK AR
Sbjct: 95 LAIDEIVSIAKRTGANLVHPGYGFLSENAEFARKVNEAGMQFVGPSPEVIDSLGDKTKAR 154
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
A++ VP++PGT PV ++ + F E PVI+KAA GGGGRGMR+V + D ++E+
Sbjct: 155 AIAIRCGVPVVPGTPGPVEHYEEAEAFVKEYGLPVIIKAAMGGGGRGMRVVRSADTLKES 214
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+RA+SEALASFG + +E+++D+P+HIE+Q++ DK G+V+HL+ERDCS+QRR+QKV++
Sbjct: 215 FERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHERDCSVQRRHQKVVE 274
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA+D+ +R A+ + ++++AK + Y NAGT EFLLD+ YFIE+NPR+QVEHT++
Sbjct: 275 IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLDQKGRHYFIEINPRIQVEHTIT 334
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEITG+D+V +Q+ +A G +L E+GL Q+KI+ +G AIQC + TEDP F P G+++V
Sbjct: 335 EEITGVDIVSAQLHVAAGFTLPEIGLTQDKISTRGFAIQCRVTTEDPNNGFAPDIGKIEV 394
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ G+R+D + + G I+P YDS+L K H ATY+ + KM R+L E +V GV
Sbjct: 395 YRSAGGNGVRLDGANGFAGSVITPHYDSMLVKCTCHDATYEYTRRKMIRSLIEFRVRGVK 454
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PF+L + F+ G T FIDD P+L + + R K+L ++G+ VNG
Sbjct: 455 TNIPFVLRLLMHDTFIQGNCW-TTFIDDTPELFQLYRSRN-RAQKLLAYLGDLAVNGS-- 510
Query: 537 PLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKL 596
++K N +P + + + T + + P G+RKL
Sbjct: 511 ----SIKGQNGEPALKSEIVM---------------PVLLDSTGNQIDVSHPSEKGWRKL 551
Query: 597 LQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKL 656
L + G F +VR
Sbjct: 552 L--------------------------------------------LDNGPAAFAKAVRNH 567
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK 716
K L+ DTT+RDAHQSLLATRVRT DL ++P+ ++ + YSLEMWGGA ++FL
Sbjct: 568 KRGLIMDTTWRDAHQSLLATRVRTIDLVNIAPYTSHALASAYSLEMWGGATFDVSMRFLH 627
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
ECPW+RL LR+L+PNIPFQM+LRG + + YS+ + FC A + GIDIFRVFD L
Sbjct: 628 ECPWDRLRRLRKLVPNIPFQMLLRGANGLCYSSLPDNVIYFFCEQAKKNGIDIFRVFDAL 687
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
N V NL G+DA ++ G +VEAT+CY+GD+ NP KKKY+L+YY +L ++VE G +
Sbjct: 688 NDVNNLSLGIDAAKRAGG---VVEATMCYSGDMLNP-KKKYNLDYYVNLVDKMVEMGIHI 743
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896
L +KDMAG++KP AA+LLI + REK+P + IHVHTHD AGT VA+ A ++AGAD+VDVA
Sbjct: 744 LGIKDMAGVMKPKAARLLISAIREKHPELPIHVHTHDSAGTAVASMAAALEAGADVVDVA 803
Query: 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGI 956
DSMSG+ SQP+ G +++ ++ TDK+ D + ++RE+
Sbjct: 804 TDSMSGLTSQPSFGAVLASVDGTDKQLEFDNN----------QLREI------------- 840
Query: 957 DLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DF 1014
SYW ++R LY+PFE +++K S+ Y +EIPGGQ TNLKF+ S GL +
Sbjct: 841 --------DSYWAQMRLLYSPFE-SEIKGTDSDVYNHEIPGGQLTNLKFQATSLGLGTQW 891
Query: 1015 EDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEF 1074
+ K+AY AN LLGDIIK TP+SKVV DLA FM Q KLS DV A + FP SV +F
Sbjct: 892 AETKKAYIEANKLLGDIIKVTPTSKVVGDLAQFMVQNKLSAEDVENRATTLDFPASVLDF 951
Query: 1075 FQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKAT 1134
FQG +G+PY GFP+ L+ VL + +R +F P A D+ A
Sbjct: 952 FQGLMGQPYGGFPEPLRTNVLKGRRQPLTDRPGKFLP--AADF--------------DAI 995
Query: 1135 KKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFM 1194
+K + ++FG ++ DC + FP +++
Sbjct: 996 RKLLS--EKFG-----------------------VSSDCDIAAYTQ-----FPGVFEEYR 1025
Query: 1195 KFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLY 1254
+F D +G + +PT+ FL+ P + EE E G T V +++ G+R V+F
Sbjct: 1026 QFVDRYGDLTTVPTKFFLSRPEMNEEMHVEIDQGKTLIVKFVALGPLNPRTGQREVYFEL 1085
Query: 1255 NG 1256
NG
Sbjct: 1086 NG 1087
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P32327|PYC2_YEAST Pyruvate carboxylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PYC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1123 (42%), Positives = 676/1123 (60%), Gaps = 119/1123 (10%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGK--GMPPVAAY 116
KIL+ANR E+ IR+ R+ +E+ ++++ IYS +D+ S HR K D+A+++G+ PV AY
Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L + EII IAK + VD IHPGYGFLSE +FA V+ AG+ +IGP V+ ++GDKV AR
Sbjct: 82 LAMDEIIEIAKKHKVDFIHPGYGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSAR 141
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
A +A+VP +PGT P+ V + +F +E +PVI+KAAFGGGGRGMR+V D + +
Sbjct: 142 HLAARANVPTVPGTPGPIETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDVADA 201
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+RA SEA +FG VE+++D+P+HIEVQ+L D +G+VVHL+ERDCS+QRR+QKV++
Sbjct: 202 FQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERDCSVQRRHQKVVE 261
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+APA+ + VRDAI +V+LAK GY NAGT EFL+D + YFIE+NPR+QVEHT++
Sbjct: 262 VAPAKTLPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEINPRIQVEHTIT 321
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEITGID+V +QI+IA G +LT+LGL Q+KIT +G +IQC + TEDP +NFQP TGRL+V
Sbjct: 322 EEITGIDIVSAQIQIAAGATLTQLGLLQDKITTRGFSIQCRITTEDPSKNFQPDTGRLEV 381
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ G+R+D Y G ISP YDS+L K +TY+ KM RAL E ++ GV
Sbjct: 382 YRSAGGNGVRLDGGNAYAGATISPHYDSMLVKCSCSGSTYEIVRRKMIRALIEFRIRGVK 441
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PFLL + + F+ G T FIDD PQL + S Q R K+L ++ + VNG
Sbjct: 442 TNIPFLLTLLTNPVFIEG-TYWTTFIDDTPQLFQMVSSQN-RAQKLLHYLADLAVNGSSI 499
Query: 537 PLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKL 596
+ + + +P +V + + ++ + K +G+R++
Sbjct: 500 KGQIGLPKLKSNP----SVPHLHDAQGNVIN----------------VTKSAPPSGWRQV 539
Query: 597 LQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKL 656
L G EF VR+ LL DTT+RDAHQSLLATRVRT+D
Sbjct: 540 LLEKGPSEFAKQVRQFNGTLLMDTTWRDAHQSLLATRVRTHD------------------ 581
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK 716
L ++P A+ ++LE WGGA ++FL
Sbjct: 582 --------------------------LATIAPTTAHALAGAFALECWGGATFDVAMRFLH 615
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
E PWERL +LR L+PNIPFQM+LRG + V YS+ + F + A G+DIFRVFD L
Sbjct: 616 EDPWERLRKLRSLVPNIPFQMLLRGANGVAYSSLPDNAIDHFVKQAKDNGVDIFRVFDAL 675
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
N + L G++AV++ G +VEAT+CY+GD+ P KKY+L+YY ++ +++V+ G +
Sbjct: 676 NDLEQLKVGVNAVKKAGG---VVEATVCYSGDMLQPG-KKYNLDYYLEVVEKIVQMGTHI 731
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896
L +KDMAG +KP AAKLLIGS R +YP++ IHVH+HD AGT VA+ AC AGAD+VDVA
Sbjct: 732 LGIKDMAGTMKPAAAKLLIGSLRTRYPDLPIHVHSHDSAGTAVASMTACALAGADVVDVA 791
Query: 897 ADSMSGICSQPAMGTIVSCLE-NTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCG 955
+SMSG+ SQP++ +++ LE N D GI++ V + +YW ++R LL+ C
Sbjct: 792 INSMSGLTSQPSINALLASLEGNID--TGINVEHVRELDAYWAEMR--------LLYSC- 840
Query: 956 IDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--D 1013
FE DLK E Y +EIPGGQ TNL F+ GL
Sbjct: 841 ----------------------FEA-DLKGPDPEVYQHEIPGGQLTNLLFQAQQLGLGEQ 877
Query: 1014 FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTE 1073
+ + KRAYR AN+LLGDI+K TP+SKVV DLA FM KL+ D+ A+ + FP SV +
Sbjct: 878 WAETKRAYREANYLLGDIVKVTPTSKVVGDLAQFMVSNKLTSDDIRRLANSLDFPDSVMD 937
Query: 1074 FFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKA-EFDPIMACDYREDEPFKMNKL---- 1128
FF+G IG+PY GFP+ L+ VL + + R E +P RED + +
Sbjct: 938 FFEGLIGQPYGGFPEPLRSDVLRNKRRKLTCRPGLELEPFDLEKIREDLQNRFGDIDECD 997
Query: 1129 -----IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFD 1166
++P+ + F K R+ +G + LPT+ F E E +
Sbjct: 998 VASYNMYPRVYEDFQKIRETYGDLSVLPTKNFLAPAEPDEEIE 1040
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P11154|PYC1_YEAST Pyruvate carboxylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PYC1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/1126 (43%), Positives = 679/1126 (60%), Gaps = 119/1126 (10%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGK--GMPPVAAY 116
KIL+ANR E+ IR+ R +E+ +++V IYS +D+ S H+ K D+A+++G+ PV AY
Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L I EII IA+ + VD IHPGYGFLSE +FA V+ AG+ +IGP V+ ++GDKV AR
Sbjct: 81 LAIDEIISIAQKHQVDFIHPGYGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSAR 140
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+ A KA+VP +PGT P+ V++ +F +E +PVI+KAAFGGGGRGMR+V D + +
Sbjct: 141 NLAAKANVPTVPGTPGPIETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDVADA 200
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+RA SEA +FG VE+++D+P+HIEVQ+L D +G+VVHL+ERDCS+QRR+QKV++
Sbjct: 201 FQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERDCSVQRRHQKVVE 260
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+APA+ + VRDAI +V+LAK GY NAGT EFL+D + YFIE+NPR+QVEHT++
Sbjct: 261 VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEINPRIQVEHTIT 320
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEITGID+V +QI+IA G SL +LGL Q+KIT +G AIQC + TEDP +NFQP TGR++V
Sbjct: 321 EEITGIDIVAAQIQIAAGASLPQLGLFQDKITTRGFAIQCRITTEDPAKNFQPDTGRIEV 380
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ G+R+D Y G ISP YDS+L K +TY+ KM RAL E ++ GV
Sbjct: 381 YRSAGGNGVRLDGGNAYAGTIISPHYDSMLVKCSCSGSTYEIVRRKMIRALIEFRIRGVK 440
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PFLL + + F+ G T FIDD PQL + S Q R K+L ++ + VNG
Sbjct: 441 TNIPFLLTLLTNPVFIEG-TYWTTFIDDTPQLFQMVSSQN-RAQKLLHYLADVAVNGSSI 498
Query: 537 PLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKL 596
+ + + +P +V + + ++ + K +G+R++
Sbjct: 499 KGQIGLPKLKSNP----SVPHLHDAQGNVIN----------------VTKSAPPSGWRQV 538
Query: 597 LQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKL 656
L G EF VR+ LL DTT+RDAHQSLLATRVRT+D
Sbjct: 539 LLEKGPAEFARQVRQFNGTLLMDTTWRDAHQSLLATRVRTHD------------------ 580
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK 716
L ++P A+ ++LE WGGA ++FL
Sbjct: 581 --------------------------LATIAPTTAHALAGRFALECWGGATFDVAMRFLH 614
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
E PWERL +LR L+PNIPFQM+LRG + V YS+ + F + A G+DIFRVFD L
Sbjct: 615 EDPWERLRKLRSLVPNIPFQMLLRGANGVAYSSLPDNAIDHFVKQAKDNGVDIFRVFDAL 674
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
N + L G+DAV++ G +VEAT+C++GD+ P KKY+L+YY ++A+++V+ G +
Sbjct: 675 NDLEQLKVGVDAVKKAGG---VVEATVCFSGDMLQPG-KKYNLDYYLEIAEKIVQMGTHI 730
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896
L +KDMAG +KP AAKLLIGS R KYP++ IHVHTHD AGT VA+ AC AGAD+VDVA
Sbjct: 731 LGIKDMAGTMKPAAAKLLIGSLRAKYPDLPIHVHTHDSAGTAVASMTACALAGADVVDVA 790
Query: 897 ADSMSGICSQPAMGTIVSCLE-NTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCG 955
+SMSG+ SQP++ +++ LE N D GI++ V + +YW ++R LL+ C
Sbjct: 791 INSMSGLTSQPSINALLASLEGNID--TGINVEHVRELDAYWAEMR--------LLYSC- 839
Query: 956 IDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--D 1013
FE DLK E Y +EIPGGQ TNL F+ GL
Sbjct: 840 ----------------------FEA-DLKGPDPEVYQHEIPGGQLTNLLFQAQQLGLGEQ 876
Query: 1014 FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTE 1073
+ + KRAYR AN+LLGDI+K TP+SKVV DLA FM KL+ DV A+ + FP SV +
Sbjct: 877 WAETKRAYREANYLLGDIVKVTPTSKVVGDLAQFMVSNKLTSDDVRRLANSLDFPDSVMD 936
Query: 1074 FFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKA-EFDPIMACDYREDEPFKMNKL---- 1128
FF+G IG+PY GFP+ + VL + + R E +P RED + +
Sbjct: 937 FFEGLIGQPYGGFPEPFRSDVLRNKRRKLTCRPGLELEPFDLEKIREDLQNRFGDVDECD 996
Query: 1129 -----IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIM 1169
++P+ + F K R+ +G + LPTR F LE E + ++
Sbjct: 997 VASYNMYPRVYEDFQKMRETYGDLSVLPTRSFLSPLETDEEIEVVI 1042
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9HES8|PYC_ASPNG Pyruvate carboxylase OS=Aspergillus niger GN=pyc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1123 (42%), Positives = 676/1123 (60%), Gaps = 118/1123 (10%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGK--GMPPVA 114
+KIL+ANR E+ IR+ R +E+ +++V +YS +D S HR K D+A+++GK PV
Sbjct: 41 FQKILVANRGEIPIRIFRTAHELSLQTVAVYSHEDHLSMHRQKADEAYMIGKRGQYTPVG 100
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYL I EI+ IA + V IHPGYGFLSE +FA+ V +G+ F+GP P +++LGDKV
Sbjct: 101 AYLAIDEIVKIALEHGVHLIHPGYGFLSENAEFARKVEQSGMVFVGPTPQTIESLGDKVS 160
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR A++ DVP++PGT PV ++VK F D FP+I+KAAFGGGGRGMR+V ++ +
Sbjct: 161 ARQLAIRCDVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQAELR 220
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
++F+RA SEA ++FG + VE+++DRP+HIEVQ+LGD +G+VVHL+ERDCS+QRR+QKV
Sbjct: 221 DSFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVVHLFERDCSVQRRHQKV 280
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA+D+ VRD I +V+LAKS+ Y NAGT EFL+D+ + +YFIE+NPR+QVEHT
Sbjct: 281 VEIAPAKDLPADVRDRILADAVKLAKSVNYRNAGTAEFLVDQQNRYYFIEINPRIQVEHT 340
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+V +QI+IA G +L +LGL Q++I+ +G AIQC + TEDP + F P TG++
Sbjct: 341 ITEEITGIDIVAAQIQIAAGATLEQLGLTQDRISTRGFAIQCRITTEDPSKGFSPDTGKI 400
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+V+ G+R+D + G I+P YDS+L K +TY+ + K+ RAL E ++ G
Sbjct: 401 EVYRSAGGNGVRLDGGNGFAGAIITPHYDSMLVKCTCRGSTYEIARRKVVRALVEFRIRG 460
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFL ++ F+ G T FIDD P+L Q R K+L ++G+ VNG
Sbjct: 461 VKTNIPFLTSLLSHPVFVDGTCW-TTFIDDTPELFALVGSQN-RAQKLLAYLGDVAVNGS 518
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYL-IKKPQANGY 593
++K +P + + K + D K L + P G+
Sbjct: 519 ------SIKGQIGEPKLKGDIIK----------------PVLHDAAGKPLDVSVPATKGW 556
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
+++L G F VR K L+ DTT+RDAHQSLLATRVRT DL +
Sbjct: 557 KQILDSEGPEAFARAVRANKGCLIMDTTWRDAHQSLLATRVRTIDLLNI----------- 605
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
AH++ ++ N YSLE WGGA ++
Sbjct: 606 ---------------AHET------------------SHALANAYSLECWGGATFDVAMR 632
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FL E PW+RL +LR+ +PNIPFQM+LRG + V YS+ + FC+ A + G+DIFRVF
Sbjct: 633 FLYEDPWDRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVF 692
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
D LN V L G+ AV G +VEATICY+GD+ NP+ KKY+L YY DL ++V+
Sbjct: 693 DALNDVDQLEVGIKAVHAAEG---VVEATICYSGDMLNPS-KKYNLPYYLDLVDKVVQFK 748
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893
VL +KDMAG+LKP AA+LLIGS RE+YP++ IHVHTHD AGTGVA+ +AC +AGAD V
Sbjct: 749 PHVLGIKDMAGVLKPQAARLLIGSIRERYPDLPIHVHTHDSAGTGVASMIACAQAGADAV 808
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953
D A DS+SG+ SQP++G I++ LE T+ G++ V +YW ++
Sbjct: 809 DAATDSLSGMTSQPSIGAILASLEGTEHDPGLNSAQVRALDTYWAQL------------- 855
Query: 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL- 1012
R LY+PFE L E Y +EIPGGQ TNL F+ GL
Sbjct: 856 ------------------RLLYSPFEA-GLTGPDPEVYEHEIPGGQLTNLIFQASQLGLG 896
Query: 1013 -DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
+ + K+AY +AN LLGD++K TP+SKVV DLA FM KL+ DV+ A ++ FP SV
Sbjct: 897 QQWAETKKAYESANDLLGDVVKVTPTSKVVGDLAQFMVSNKLTAEDVIARAGELDFPGSV 956
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYRED-----EP 1122
EF +G +G+PY GFP+ L+ + L + +P+ + RE+ E
Sbjct: 957 LEFLEGLMGQPYGGFPEPLRSRALRDRRKLDKRPGLYLEPLDLAKIKSQIRENYGAATEY 1016
Query: 1123 FKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEF 1165
+ ++PK + + KF +FG + LPTR F E EF
Sbjct: 1017 DVASYAMYPKVFEDYKKFVAKFGDLSVLPTRYFLAKPEIGEEF 1059
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Aspergillus niger (taxid: 5061) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|O93918|PYC_ASPTE Pyruvate carboxylase OS=Aspergillus terreus GN=pyc PE=2 SV=1 | Back alignment and function description |
|---|
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/1122 (42%), Positives = 678/1122 (60%), Gaps = 116/1122 (10%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVG-KGM-PPVA 114
+KIL+ANR E+ IR+ R +E+ +++V I+S +D+ S HR K D+A+++G +G PV
Sbjct: 42 FQKILVANRGEIPIRIFRTAHELSLQTVAIFSHEDRLSMHRQKADEAYMIGHRGQYTPVG 101
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYL EI+ IA + V IHPGYGFLSE DFA+ V AG+ F+GP P+ + +LGDKV
Sbjct: 102 AYLAADEIVKIALEHGVHLIHPGYGFLSENADFARKVEKAGMVFVGPTPDTIDSLGDKVS 161
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR A++ +VP++PGT PV ++VK F D FP+I+KAAFGGGGRGMR+V N+ +
Sbjct: 162 ARQLAIRCNVPVVPGTEGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRNQADLR 221
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
++F+RA SEA ++FG + VE+++D+P+HIEVQ+LGD +G+VVHL+ERDCS+QRR+QKV
Sbjct: 222 DSFERATSEARSAFGNGTVFVERFLDKPKHIEVQLLGDNHGNVVHLFERDCSVQRRHQKV 281
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
+++APA+D+ VRD I +V+LAKS+ Y NAGT EFL+D+ + YFIE+NPR+QVEHT
Sbjct: 282 VEVAPAKDLPTDVRDRILSDAVKLAKSVNYRNAGTAEFLVDQQNRHYFIEINPRIQVEHT 341
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+V +QI+IA G +L +LGL Q++I+ +G AIQC + TEDP + F P TG++
Sbjct: 342 ITEEITGIDIVAAQIQIAAGATLEQLGLTQDRISTRGFAIQCRITTEDPSKGFSPDTGKI 401
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+V+ G+R+D + G I+P YDS+L K +TY+ + K+ RAL E ++ G
Sbjct: 402 EVYRSAGGNGVRLDGGNGFAGAIITPHYDSMLVKCTCRGSTYEIARRKVVRALVEFRIRG 461
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFL ++ F+ G T FIDD P+L Q R K+L ++G+ VNG
Sbjct: 462 VKTNIPFLTSLLSHPTFVDGNCW-TTFIDDTPELFALVGSQN-RAQKLLAYLGDVAVNGS 519
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
++K +P KF+ + K+ + + +P G++
Sbjct: 520 ------SIKGQMGEP-------KFKGEII--------KPKLLDAQGKPLDVSQPCTKGWK 558
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+++ G F VR K L+ DTT+RDAHQSLLATRVRT DL +
Sbjct: 559 QIIDQEGPVAFAKAVRANKGCLIMDTTWRDAHQSLLATRVRTIDLLNI------------ 606
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
AH++ ++ +N YSLE WGGA ++F
Sbjct: 607 --------------AHET------------------SHALSNAYSLECWGGATFDVAMRF 634
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L E PW+RL ++R+ +PNIPFQM+LRG + V YS+ + FC+ A + G+DIFRVFD
Sbjct: 635 LYEDPWDRLRKMRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKNAKKCGVDIFRVFD 694
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN + L G+ AV G +VEAT+CY+GD+ NP KKKY+L YY L ++V
Sbjct: 695 ALNDIDQLEVGIKAVHAAEG---VVEATVCYSGDMLNP-KKKYNLEYYLALVDKIVALKP 750
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAG+LKP AA+LL+GS RE+YP++ IHVHTHD AGTGVA+ +AC +AGAD VD
Sbjct: 751 HVLGIKDMAGVLKPQAARLLVGSIRERYPDLPIHVHTHDSAGTGVASMIACAQAGADAVD 810
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
A DSMSG+ SQP++G I++ LE T+ G++ V SYW ++
Sbjct: 811 AATDSMSGMTSQPSIGAILASLEGTEHDPGLNSAHVRALDSYWAQL-------------- 856
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL-- 1012
R LY+PFE +L E Y +EIPGGQ TNL F+ GL
Sbjct: 857 -----------------RLLYSPFEA-NLTGPDPEVYEHEIPGGQLTNLIFQASQLGLGQ 898
Query: 1013 DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVT 1072
+ + K+AY AN LLGDI+K TP+SKVV DLA F+ KLS +DV++ A ++ FP SV
Sbjct: 899 QWAETKKAYEVANDLLGDIVKVTPTSKVVGDLAQFIVSNKLSAQDVVDRAAELDFPGSVL 958
Query: 1073 EFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDP--IMACDYREDEPFK------ 1124
EF +G +G+P+ GFP+ L+ + L + + +P + A + E F
Sbjct: 959 EFLEGLMGQPFGGFPEPLRSRALRNRRKLDKRPGLYLEPLDLAAIKNQIREQFGSATEYD 1018
Query: 1125 -MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEF 1165
+ ++PK + + KF ++G + LPTR F E EF
Sbjct: 1019 VASYAMYPKVFEDYKKFVQKYGDLSVLPTRYFLAKPEIGEEF 1060
|
Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Aspergillus terreus (taxid: 33178) EC: 6 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1427 | ||||||
| 328788708 | 1213 | PREDICTED: pyruvate carboxylase, mitocho | 0.742 | 0.873 | 0.506 | 0.0 | |
| 380021294 | 1196 | PREDICTED: pyruvate carboxylase, mitocho | 0.742 | 0.886 | 0.502 | 0.0 | |
| 156540073 | 1196 | PREDICTED: pyruvate carboxylase, mitocho | 0.794 | 0.948 | 0.477 | 0.0 | |
| 383857581 | 1196 | PREDICTED: pyruvate carboxylase, mitocho | 0.744 | 0.887 | 0.505 | 0.0 | |
| 340723522 | 1192 | PREDICTED: pyruvate carboxylase, mitocho | 0.740 | 0.885 | 0.502 | 0.0 | |
| 307169536 | 1196 | Pyruvate carboxylase, mitochondrial [Cam | 0.770 | 0.919 | 0.487 | 0.0 | |
| 345495993 | 1180 | PREDICTED: pyruvate carboxylase, mitocho | 0.783 | 0.947 | 0.475 | 0.0 | |
| 340723520 | 1196 | PREDICTED: pyruvate carboxylase, mitocho | 0.742 | 0.886 | 0.502 | 0.0 | |
| 307199786 | 1280 | Pyruvate carboxylase, mitochondrial [Har | 0.776 | 0.865 | 0.491 | 0.0 | |
| 350426414 | 1196 | PREDICTED: pyruvate carboxylase, mitocho | 0.742 | 0.886 | 0.502 | 0.0 |
| >gi|328788708|ref|XP_003251170.1| PREDICTED: pyruvate carboxylase, mitochondrial-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 1172 bits (3033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/1210 (50%), Positives = 789/1210 (65%), Gaps = 151/1210 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
+ + +L+ANR E+AIRV RAC E+GI+SV IYSEQDK HR K D+ ++VG+G+PPV
Sbjct: 51 RPIRSVLVANRGEIAIRVFRACTELGIRSVAIYSEQDKMQMHRQKADEGYVVGRGLPPVQ 110
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEII +AK NNVDAIHPGYGFLSER DFA+AVI AG+ FIGP+P V++ +GDKV
Sbjct: 111 AYLNIPEIIKVAKENNVDAIHPGYGFLSERSDFAEAVINAGIRFIGPSPKVVQQMGDKVA 170
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA+ A VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + + +
Sbjct: 171 ARQAAIDAGVPIVPGTDGPVTTSDEAMEFCMKHGLPVIFKAAYGGGGRGMRVVRHMEEVR 230
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F RA SEA A+FG M +EK+I+RPRHIEVQ+LGD+ G+VVHLYERDCS+QRR+QKV
Sbjct: 231 EMFDRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDQAGNVVHLYERDCSVQRRHQKV 290
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA + VR+ +TE +VRLAK +GYSNAGTVEFL D+ NFYFIEVN RLQVEHT
Sbjct: 291 VEIAPAPRLDPKVRNKMTEHAVRLAKHVGYSNAGTVEFLADESGNFYFIEVNARLQVEHT 350
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ QEKI PQG AIQC + TEDP +NFQP TGR+
Sbjct: 351 VTEEITGIDLVQSQIRIAEGITLPELGMTQEKIVPQGFAIQCRVTTEDPAKNFQPDTGRI 410
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM RAL E +V G
Sbjct: 411 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCAKMNRALREFRVRG 470
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G+ ++T FID+NPQL + Q R K+L ++G LVNGP
Sbjct: 471 VKTNIPFLLNVLENQKFLNGK-VDTYFIDENPQLFQFQPSQN-RAQKLLNYLGSVLVNGP 528
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL +KP + P I + F A ++ D D +++ P+
Sbjct: 529 STPLATPLKPAEIKPHIPQVALDFAKLAA---------AEENNDPDATGVLEPPKG---- 575
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
FRD ++ G F ++R
Sbjct: 576 ---------------------------FRDIYKK---------------QGPEAFAKAIR 593
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
+ K +LL DTTFRDAHQSLLATRVR++DL ++PFVA++F+NLYSLE WGGA L+F
Sbjct: 594 QHKGLLLMDTTFRDAHQSLLATRVRSHDLLMIAPFVAHKFSNLYSLENWGGATFDVALRF 653
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA Q G+DIFRVFD
Sbjct: 654 LHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVYKFCELAVQTGMDIFRVFD 713
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GMDA + G IVEA I Y GD+++PNKKKY+L YY DLA +LV++G
Sbjct: 714 SLNYLPNLILGMDAAGKAGG---IVEAAISYTGDVSDPNKKKYNLKYYTDLADELVKAGT 770
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +LI + R+K+P+I IHVHTHD AG GVA+ L+C ++GAD+VD
Sbjct: 771 HVLSIKDMAGLLKPKAASMLIDAIRQKHPDIPIHVHTHDTAGAGVASMLSCAESGADVVD 830
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+ L T K I+L D+ +
Sbjct: 831 VAVDSMSGMTSQPSMGAVVASLIGTPKDTEINLSDISE---------------------- 868
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YS+YW + R LYAPFECT +K+ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 869 ---------YSAYWEQTRTLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLG 919
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KLS DV+ A+++ FPKSV
Sbjct: 920 AFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLSSEDVVNKAEELSFPKSV 979
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131
EF QG+IGEP+ GFP+ L+ KVL + P
Sbjct: 980 VEFLQGAIGEPHGGFPEPLRSKVLKDM--------------------------------P 1007
Query: 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVK-----MNELIF 1186
+ + P + LP + F AL+ + RE+ P M+ ++
Sbjct: 1008 RVKGR---------PGETLPP-LDFDALKSQ----------LRESHPHLTNRDIMSAALY 1047
Query: 1187 PKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHG 1246
P+ T ++ FR+++GPVDKL TRIFL GP +GEEF + G T + TL+++E L +G
Sbjct: 1048 PEVTNDYLNFREQYGPVDKLETRIFLTGPKVGEEFDVTIEKGKTLAIKTLAVAEDLTKNG 1107
Query: 1247 ERTVFFLYNG 1256
ER VFF NG
Sbjct: 1108 EREVFFEMNG 1117
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021294|ref|XP_003694504.1| PREDICTED: pyruvate carboxylase, mitochondrial isoform 1 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/1209 (50%), Positives = 782/1209 (64%), Gaps = 149/1209 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
+ + +L+ANR E+AIRV RAC E+GI+SV IYSEQDK HR K D+ ++VG+G+PPV
Sbjct: 34 RPIRSVLVANRGEIAIRVFRACTELGIRSVAIYSEQDKMQMHRQKADEGYVVGRGLPPVQ 93
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEII +AK NNVDAIHPGYGFLSER DFA+AVI AG+ FIGP+P V++ +GDKV
Sbjct: 94 AYLNIPEIIKVAKENNVDAIHPGYGFLSERSDFAEAVINAGIRFIGPSPKVVQQMGDKVA 153
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA+ A VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + + +
Sbjct: 154 ARQAAIDAGVPIVPGTDGPVTTSDEAMEFCMKHGLPVIFKAAYGGGGRGMRVVRHMEEVR 213
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F RA SEA A+FG M +EK+I+RPRHIEVQ+LGD+ G+VVHL+ERDCS+QRR+QKV
Sbjct: 214 EMFDRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDQAGNVVHLWERDCSVQRRHQKV 273
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA + VR+ +TE +VRLAK +GYSNAGTVEFL D+ NFYFIEVN RLQVEHT
Sbjct: 274 VEIAPAPRLDPKVRNKMTEHAVRLAKHVGYSNAGTVEFLADESGNFYFIEVNARLQVEHT 333
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ QEKI PQG AIQC + TEDP +NFQP TGR+
Sbjct: 334 VTEEITGIDLVQSQIRIAEGITLPELGMTQEKIIPQGFAIQCRVTTEDPAKNFQPDTGRI 393
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM RAL E +V G
Sbjct: 394 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCAKMNRALREFRVRG 453
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G+ ++T FID+NPQL + Q R K+L ++G LVNGP
Sbjct: 454 VKTNIPFLLNVLENQKFLNGK-VDTYFIDENPQLFQFQPSQN-RAQKLLNYLGSVLVNGP 511
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL +KP + P I + F A ++ D D +++ P+
Sbjct: 512 STPLATPLKPAEIKPHIPQVALDFAKLAA---------AEENNDPDATDIMEPPKG---- 558
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
FRD ++ G F +VR
Sbjct: 559 ---------------------------FRDIYKK---------------QGPEAFAKAVR 576
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
+ K +LL DTTFRDAHQSLLATRVR++DL ++PFVA++F+NLYSLE WGGA L+F
Sbjct: 577 QHKGLLLMDTTFRDAHQSLLATRVRSHDLLMIAPFVAHKFSNLYSLENWGGATFDVALRF 636
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA Q G+D+FRVFD
Sbjct: 637 LHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVYKFCELAVQTGMDVFRVFD 696
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GM+A + G IVEA I Y GD+++PNKKKY+L YY DLA +LV++G
Sbjct: 697 SLNYLPNLILGMNAAGKAGG---IVEAAISYTGDVSDPNKKKYNLKYYTDLADELVKAGT 753
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +LI + R+K+P+I IHVHTHD AG GVA+ L+C ++GAD+VD
Sbjct: 754 HVLSIKDMAGLLKPKAASMLIDAIRQKHPDIPIHVHTHDTAGAGVASMLSCAESGADVVD 813
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+ L T K I+L D+ +
Sbjct: 814 VAVDSMSGMTSQPSMGAVVASLIGTAKDTKINLSDISE---------------------- 851
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YS+YW + R LYAPFECT +K+ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 852 ---------YSAYWEQTRTLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLG 902
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KLS DV+ A+++ FPKSV
Sbjct: 903 AFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLSSDDVVNKAEELSFPKSV 962
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYREDEPFKMNK 1127
EF QG+IGEP++GFP+ L+ KVL + P+ + RE P NK
Sbjct: 963 VEFLQGAIGEPHRGFPEPLRSKVLKDMPRVKGRPGETLSPLDFDALKSQLRESHPHLTNK 1022
Query: 1128 LIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFP 1187
I M+ ++P
Sbjct: 1023 DI---------------------------------------------------MSAALYP 1031
Query: 1188 KATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGE 1247
+ T ++ FR+++GPVDKL TRIFL GP +GEEF + G T + TL+++E L +GE
Sbjct: 1032 EVTNDYLNFREQYGPVDKLETRIFLTGPKVGEEFDVTIEKGKTLAIKTLAVAEDLTKNGE 1091
Query: 1248 RTVFFLYNG 1256
R VFF NG
Sbjct: 1092 REVFFEMNG 1100
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156540073|ref|XP_001600219.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 1 [Nasonia vitripennis] gi|345495988|ref|XP_003427614.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1165 bits (3013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1312 (47%), Positives = 821/1312 (62%), Gaps = 178/1312 (13%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K + +L+ANR E+AIRV RAC E+GI+SV +YSEQDK HR K D++++VG+G+PPV
Sbjct: 35 KPIRSVLVANRGEIAIRVFRACTELGIRSVAVYSEQDKMQMHRQKADESYIVGRGLPPVQ 94
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEII +AK NNVDAIHPGYGFLSER DFA++VI AG+ FIGP P+V++ +GDKV
Sbjct: 95 AYLNIPEIIRVAKENNVDAIHPGYGFLSERADFAQSVIDAGIRFIGPKPSVVQQMGDKVA 154
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA+++ VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + +
Sbjct: 155 ARKAAIESGVPIVPGTDGPVTTSDEAMEFCTKYGLPVIFKAAYGGGGRGMRVVKQMEEVR 214
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F RA SEA A+FG M +EK+I+RPRHIEVQ+LGD G+VVHLYERDCS+QRR+QKV
Sbjct: 215 EMFDRASSEAKAAFGDGAMFIEKFIERPRHIEVQLLGDHAGNVVHLYERDCSVQRRHQKV 274
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA ++ +VRD +TE ++RLAK +GY NAGTVEFL+D+ NFYFIEVN RLQVEHT
Sbjct: 275 VEIAPAPTLNPTVRDKMTEHAIRLAKHVGYGNAGTVEFLVDETGNFYFIEVNARLQVEHT 334
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ Q+KI PQG AIQC + TEDP ++FQP TGR+
Sbjct: 335 VTEEITGIDLVQSQIRIAEGITLPELGMTQDKIKPQGFAIQCRVTTEDPAKSFQPDTGRI 394
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM RAL E +V G
Sbjct: 395 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCAKMNRALREFRVRG 454
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G ++T FID+NPQL + Q R K+L +IG LVNGP
Sbjct: 455 VKTNIPFLLNVLENQKFLNGN-VDTYFIDENPQLFQFQPSQN-RAQKLLNYIGTVLVNGP 512
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL ++KP + P + + + A+ SD E+S + I P+ G+R
Sbjct: 513 TTPLATSLKPAEIRPYVPQIAMDYAKLAAEEESD-PEKSDV---------INPPK--GFR 560
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+L+ G F VR+ K +L DTT+RDAHQSLLATRVR++DL
Sbjct: 561 NILKEKGPEAFAKAVRQHKGLLFMDTTYRDAHQSLLATRVRSHDL--------------- 605
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
LL +SPFVA++FNNLY+LE WGGA L+F
Sbjct: 606 -----LL------------------------ISPFVAHKFNNLYALENWGGATFDVALRF 636
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R++IPNIPFQM+LRG + VGY+NY V FC LA Q G+DIFRVFD
Sbjct: 637 LHECPWERLEDMRKIIPNIPFQMLLRGANAVGYTNYPDNVVFKFCELAVQTGMDIFRVFD 696
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GMDA + G +VEA I Y GD+++P++KKY L YY +LA +LV++G
Sbjct: 697 SLNYLPNLILGMDAAGKAGG---VVEAAISYTGDISDPSRKKYDLKYYVNLADELVKAGT 753
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +L+ + R+K+P++ IH+HTHD +G+GVA+ LAC KAGAD+VD
Sbjct: 754 HVLSIKDMAGLLKPKAASMLVDAIRQKHPDVPIHIHTHDTSGSGVASMLACAKAGADVVD 813
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+CL+ + G DL DV +YS+YW + R L
Sbjct: 814 VAVDSMSGMTSQPSMGALVACLQGSPHETGFDLRDVSEYSAYWEQTRTL----------- 862
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YAPFEC T +K+ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 863 --------------------YAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLG 902
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KL DV+E A+++ FPKSV
Sbjct: 903 EFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLKPADVLEKAEELSFPKSV 962
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYREDEPF---- 1123
EF QG+IGEPYQGFP+ + KVL + P+ + +E P
Sbjct: 963 VEFLQGAIGEPYQGFPEPFRSKVLKDMPRINGRPGESLPPLDFAALKARLQESHPRITDK 1022
Query: 1124 -KMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMN 1182
M+ ++P+ T+ ++ F D FGPVDKL TRIF
Sbjct: 1023 DVMSAALYPEVTQDYLTFHDAFGPVDKLDTRIF--------------------------- 1055
Query: 1183 ELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHL 1242
LI PK +GEEF + G T + TL+++E L
Sbjct: 1056 -LIGPK----------------------------VGEEFEVTIEKGKTLGIKTLAMAEDL 1086
Query: 1243 NDHGERTVFFLYNG-LHTTNTYNLQQI--LKTSPSDVFAFLRLKSERIFLNGPNIGEEFS 1299
+GER VFF NG L + + + I L P K+++ + P G
Sbjct: 1087 TPNGEREVFFEMNGQLRSVFIKDKEAIKELHIHPKAS------KNDKNQIGAPMPGTVID 1140
Query: 1300 CEFKTGDT----AYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLK 1347
K GDT A + LS + E V G+++SLD N+ KL+
Sbjct: 1141 IRVKVGDTVEKGAALVVLSAMKM-----EMVVQAPRAGKIKSLDINQGMKLE 1187
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857581|ref|XP_003704283.1| PREDICTED: pyruvate carboxylase, mitochondrial [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/1207 (50%), Positives = 790/1207 (65%), Gaps = 145/1207 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K + +L+ANR E+AIRV RAC E+GI+SV IYSEQDK HR K D+ ++VG+G+PPV
Sbjct: 34 KPIRSVLVANRGEIAIRVFRACTELGIRSVAIYSEQDKMQMHRQKADEGYMVGRGLPPVQ 93
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEII +AK N+VDAIHPGYGFLSER DFA+AVI AG+ FIGP+P V++ +GDKV
Sbjct: 94 AYLNIPEIIQVAKENDVDAIHPGYGFLSERSDFAEAVINAGIRFIGPSPKVVQQMGDKVA 153
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR+AA++A VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + +
Sbjct: 154 AREAAIQAGVPIVPGTDGPVTTSDEAMEFCMKHGLPVIFKAAYGGGGRGMRVVRQMEEVR 213
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F RA SEA A+FG M +EK+I+RPRHIEVQ+LGD G+VVHLYERDCS+QRR+QKV
Sbjct: 214 EMFDRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDNAGNVVHLYERDCSVQRRHQKV 273
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA + VRD +TE +VRLAK +GYSNAGTVEFL D+ NFYFIEVN RLQVEHT
Sbjct: 274 VEIAPAPCLDTKVRDKMTEHAVRLAKHVGYSNAGTVEFLADEGGNFYFIEVNARLQVEHT 333
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ Q KI PQG AIQC + TEDP ++FQP TGR+
Sbjct: 334 VTEEITGIDLVQSQIRIAEGMTLPELGMTQSKIVPQGSAIQCRVTTEDPAKSFQPDTGRI 393
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H++ +SSC KM RAL E +V G
Sbjct: 394 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHSSDLQSSCAKMNRALREFRVRG 453
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRD--MKILRFIGETLVN 532
V TN+PFLLNV +++KFLSG ++T FID+NPQL + +Q R+ K+L ++G LVN
Sbjct: 454 VKTNIPFLLNVLENQKFLSGN-VDTYFIDENPQLFQ---FQPSRNRAQKLLNYLGSILVN 509
Query: 533 GPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANG 592
GP TPL +KP ++ P I + F A ++ D D+ +++ P+ G
Sbjct: 510 GPSTPLATPLKPGDIKPHIPQIALDFAKLAA---------AEENNDPDQPDVLEPPK--G 558
Query: 593 YRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNS 652
+R + Y K G F +
Sbjct: 559 FRHI----------------------------------------YKEK----GPEAFAKA 574
Query: 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL 712
+R+ +LL DTTFRDAHQSLLATRVR++DL +SPFVA++FNNLYSLE WGGA L
Sbjct: 575 IRQHDGLLLMDTTFRDAHQSLLATRVRSHDLLMISPFVAHKFNNLYSLENWGGATFDVAL 634
Query: 713 KFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772
+FL ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA Q G+DIFRV
Sbjct: 635 RFLHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVYKFCELAVQTGMDIFRV 694
Query: 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832
FD LN +PNL+ GM+A + G IVEA I Y GD+++PN++KY L YY LA +LV++
Sbjct: 695 FDSLNYLPNLILGMEAAGKAGG---IVEAAISYTGDVSDPNRQKYDLKYYTQLADELVKA 751
Query: 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892
G VL +KDMAGLLKP AA +LI + R+K+P++ +H+HTHD AG GVA+ LAC ++GAD+
Sbjct: 752 GTHVLAIKDMAGLLKPKAASMLIDAIRQKHPDVPLHIHTHDTAGAGVASMLACAESGADV 811
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952
VDVA DSMSG+ SQP+MG IV+ L T K I+L DV +
Sbjct: 812 VDVAVDSMSGMTSQPSMGAIVASLMGTKKDTKINLDDVSE-------------------- 851
Query: 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011
YS+YW + R LYAPFECT +K+ +++ YL EIPGGQYTNL+F+ S G
Sbjct: 852 -----------YSAYWEQTRTLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLG 900
Query: 1012 LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPK 1069
L FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KL+ DV+ A+++ FPK
Sbjct: 901 LGEMFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLTSDDVLNKAEELSFPK 960
Query: 1070 SVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLI 1129
SV EF QG+IGEPY GFP+ L+ KVL +D P +
Sbjct: 961 SVVEFLQGAIGEPYGGFPEPLRSKVL-----------------------KDMPRVKGR-- 995
Query: 1130 FPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKA 1189
P AT P+D F+AL+ + ++ + M+ ++P
Sbjct: 996 -PGAT---------LPPLD-------FNALKTQ-----LLESHPNVTDKDIMSAALYPSV 1033
Query: 1190 TKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERT 1249
T ++ FR+++GPVDKL TRIFL GP + EEF + G T + TL+++E L +GER
Sbjct: 1034 TNDYLNFREQYGPVDKLETRIFLTGPKVAEEFDVTIEKGKTLAIKTLAVAEDLTKNGERE 1093
Query: 1250 VFFLYNG 1256
VFF NG
Sbjct: 1094 VFFEMNG 1100
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723522|ref|XP_003400138.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 3 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/1209 (50%), Positives = 778/1209 (64%), Gaps = 153/1209 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K + +L+ANR E+AIRV RAC E+GI+SV IYSEQDK HR K D+ +++GKG+PPV
Sbjct: 34 KPIRSVLVANRGEIAIRVFRACTELGIRSVAIYSEQDKMQMHRQKADEGYVIGKGLPPVQ 93
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEI+ IAK N+VDAIHPGYGFLSER DFA+ VI AG+ FIGP+P V++ +GDKV
Sbjct: 94 AYLNIPEILKIAKENDVDAIHPGYGFLSERSDFAQEVINAGIRFIGPSPKVVQQMGDKVA 153
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA++A+VPI+PGT PVT ++ EFC + PVI KAA+GGGGRGMR+V + + +
Sbjct: 154 ARQAAIEAEVPIVPGTDGPVTTSEEAMEFCVKHGLPVIFKAAYGGGGRGMRVVRHMEEVR 213
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F+RA SEA A+FG M +EK+I+RPRHIEVQ+LGDK G+VVHLYERDCS+QRR+QKV
Sbjct: 214 EMFERASSEAAAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKV 273
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA + VR +TE +VRLAK +GYSNAGTVEFL D+ NFYFIEVN RLQVEHT
Sbjct: 274 VEIAPAPMLDPKVRAKMTEHAVRLAKHVGYSNAGTVEFLADESGNFYFIEVNARLQVEHT 333
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ Q+KI PQG AIQC + TEDP +NFQP TGR+
Sbjct: 334 VTEEITGIDLVQSQIRIAEGITLPELGMTQDKIVPQGFAIQCRVTTEDPAKNFQPDTGRI 393
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM RAL E +V G
Sbjct: 394 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCSKMNRALREFRVRG 453
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G ++T FID+NPQL E + Q R K+L ++G LVNGP
Sbjct: 454 VKTNIPFLLNVLENQKFLNGN-VDTYFIDENPQLFEFHPSQN-RAQKLLNYLGTVLVNGP 511
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL +KP + P I + F
Sbjct: 512 STPLATPLKPAEIKPHIPQVALDF------------------------------------ 535
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+F K KH+L FR ++ G F +VR
Sbjct: 536 --------AKFAAAEEKEKHILEPPKGFRHIYKE---------------QGPEAFAKAVR 572
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
+ K +LL DTTFRDAHQSLLATRVR++DL +SPFVA++FNNLYSLE WGGA L+F
Sbjct: 573 QHKGLLLMDTTFRDAHQSLLATRVRSHDLLTISPFVAHKFNNLYSLENWGGATFDVALRF 632
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA Q G+D+FRVFD
Sbjct: 633 LHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVYKFCELAVQTGMDVFRVFD 692
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GM+A + G IVEA I Y GD+++PN+KKY L YY DLA +LV++G
Sbjct: 693 SLNYLPNLILGMEAAGKAGG---IVEAAISYTGDVSDPNRKKYDLKYYTDLADELVKAGT 749
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +LI + R+K+P++ IHVHTHD AG GVA+ LAC ++GAD+VD
Sbjct: 750 HVLAVKDMAGLLKPKAAVMLIDAIRQKHPDVPIHVHTHDTAGAGVASMLACAESGADVVD 809
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+ L T K +DL D+ +
Sbjct: 810 VAVDSMSGMTSQPSMGAVVASLIGTPKDTQLDLSDISE---------------------- 847
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YS+YW + R LYAPFECT +K+ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 848 ---------YSAYWEQTRTLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLG 898
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KLS DV+ A+++ FPKSV
Sbjct: 899 EFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLSADDVLNKAEELSFPKSV 958
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYREDEPFKMNK 1127
EF QG+IGEP+ GFP+ + KVL + A P+ + + +E P NK
Sbjct: 959 VEFLQGAIGEPHGGFPEPFRSKVLKDMPRVKGRPGASLPPLDFDALKSELKETYPHVSNK 1018
Query: 1128 LIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFP 1187
I M+ ++P
Sbjct: 1019 DI---------------------------------------------------MSAALYP 1027
Query: 1188 KATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGE 1247
+ T +++FR++FGPVD+L TRIFL G +GEEF + G T + TL+I+E L +GE
Sbjct: 1028 QVTNDYLRFREQFGPVDRLETRIFLTGAKVGEEFDVTIERGKTLAIKTLAIAEDLTPNGE 1087
Query: 1248 RTVFFLYNG 1256
R VFF NG
Sbjct: 1088 REVFFEMNG 1096
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169536|gb|EFN62178.1| Pyruvate carboxylase, mitochondrial [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1268 (48%), Positives = 802/1268 (63%), Gaps = 168/1268 (13%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
+ + +L+ANR E+AIRV RAC+E+GI+SV IYSEQDK HR K D+ +LVGKG+PPV
Sbjct: 34 RPIRSVLVANRGEIAIRVFRACSELGIRSVAIYSEQDKMQMHRQKADEGYLVGKGLPPVQ 93
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEII +AK NN+DAIHPGYGFLSER DFA+AV AG+ FIGP+P V++ +GDKV
Sbjct: 94 AYLNIPEIIQVAKENNIDAIHPGYGFLSERSDFAQAVTDAGIRFIGPSPKVVQQMGDKVA 153
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA++A VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + +
Sbjct: 154 ARQAAIQAGVPIVPGTDGPVTTSDEAIEFCMKHGLPVIFKAAYGGGGRGMRVVRQMEEVR 213
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F RA SEA A+FG M +EK+I+RPRHIEVQ+LGD G+VVHLYERDCS+QRR+QKV
Sbjct: 214 EMFDRASSEAAAAFGNGAMFIEKFIERPRHIEVQLLGDHAGNVVHLYERDCSVQRRHQKV 273
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA +S +RD +TE +V+LAK +GY+NAGTVEFL+D+ NFYFIEVN RLQVEHT
Sbjct: 274 VEIAPAPSLSTKIRDKMTEYAVKLAKHVGYANAGTVEFLVDESGNFYFIEVNARLQVEHT 333
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ QEKITPQG AIQC + TEDP +NFQP TGR+
Sbjct: 334 VTEEITGIDLVQSQIRIAEGMTLPELGMTQEKITPQGFAIQCRVTTEDPAKNFQPDTGRI 393
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H+ +SSC KM RAL E +V G
Sbjct: 394 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHSGDLQSSCAKMNRALREFRVRG 453
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G ++T FID++PQL + Q R K+L ++G LVNGP
Sbjct: 454 VKTNIPFLLNVLENQKFLNG-IVDTYFIDEHPQLFQLQPSQN-RAQKLLNYLGSVLVNGP 511
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL +KP ++ P I + F A E +K D D ++ P+ G+R
Sbjct: 512 STPLATQLKPADIKPHIPQIALDFAKLAA------AEETK---DLDAPDVLDPPK--GFR 560
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+ + G F +R+ K +LL DTTFRDAHQSLLATRVR++D
Sbjct: 561 HIYKQQGPEAFAKAIRQHKGLLLMDTTFRDAHQSLLATRVRSHD---------------- 604
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
LLT +SPFVA++FNNLYSLE WGGA L+F
Sbjct: 605 -----LLT-----------------------ISPFVAHKFNNLYSLENWGGATFDVALRF 636
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA + G+DIFRVFD
Sbjct: 637 LHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVFKFCELAVKTGMDIFRVFD 696
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GM+A G IVEA I Y GD+++PN+ KY+L YY DLA +LV++G
Sbjct: 697 SLNYLPNLIVGMNAAGNAGG---IVEAAISYTGDVSDPNRTKYNLKYYTDLADELVKAGT 753
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA++LI + R+K+P+I +H+HTHD AG GVA+ LAC K+GAD+VD
Sbjct: 754 HVLGIKDMAGLLKPRAAEILIDAIRQKHPDIPLHIHTHDTAGAGVASMLACAKSGADVVD 813
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG IV+CL+ TD +DL D+ +YS+YW + R L
Sbjct: 814 VAVDSMSGMTSQPSMGAIVACLQGTDIDTKLDLPDISEYSAYWEQTRTL----------- 862
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YAPFEC T +++ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 863 --------------------YAPFECTTTMRSGNADVYLNEIPGGQYTNLQFQAYSLGLG 902
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KL+ DV++ A+++ FPKSV
Sbjct: 903 EFFEDVKKAYRQANLLLGDIIKVTPSSKVVGDLAQFMVQNKLTADDVLKRAEELSFPKSV 962
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYREDEPF---- 1123
EF QG+IGEP+ GFP+ L+ KVL + A P+ + + +E P
Sbjct: 963 VEFLQGAIGEPHGGFPEPLRSKVLKDMPRVQGRPGASLPPLDFAALTKELKESHPHVSEK 1022
Query: 1124 -KMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMN 1182
M+ ++PK TK ++ F+++FGPVDKL TR+F
Sbjct: 1023 DVMSAALYPKVTKDYLNFKEQFGPVDKLETRVF--------------------------- 1055
Query: 1183 ELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHL 1242
L PK + F + G T + TL+++E L
Sbjct: 1056 -LTGPKVGEVF----------------------------DVTIEKGKTLGIKTLAVAEDL 1086
Query: 1243 NDHGERTVFFLYNG-LHTTNTYNLQQI--LKTSPSDVFAFLRLKSERIFLNGPNIGEEFS 1299
+GER VFF NG L + + + + L P V K + L P GE
Sbjct: 1087 TKNGEREVFFEMNGQLRSVFIKDKEAVKELHVHPKAV------KGDNNQLGAPMPGEVID 1140
Query: 1300 CEFKTGDT 1307
K GDT
Sbjct: 1141 IRVKIGDT 1148
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495993|ref|XP_003427616.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 4 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/1312 (47%), Positives = 815/1312 (62%), Gaps = 194/1312 (14%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K + +L+ANR E+AIRV RAC E+GI+SV +YSEQDK HR K D++++VG+G+PPV
Sbjct: 35 KPIRSVLVANRGEIAIRVFRACTELGIRSVAVYSEQDKMQMHRQKADESYIVGRGLPPVQ 94
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEII +AK NNVDAIHPGYGFLSER DFA++VI AG+ FIGP P+V++ +GDKV
Sbjct: 95 AYLNIPEIIRVAKENNVDAIHPGYGFLSERADFAQSVIDAGIRFIGPKPSVVQQMGDKVA 154
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA+++ VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + +
Sbjct: 155 ARKAAIESGVPIVPGTDGPVTTSDEAMEFCTKYGLPVIFKAAYGGGGRGMRVVKQMEEVR 214
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F RA SEA A+FG M +EK+I+RPRHIEVQ+LGD G+VVHLYERDCS+QRR+QKV
Sbjct: 215 EMFDRASSEAKAAFGDGAMFIEKFIERPRHIEVQLLGDHAGNVVHLYERDCSVQRRHQKV 274
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA ++ +VRD +TE ++RLAK +GY NAGTVEFL+D+ NFYFIEVN RLQVEHT
Sbjct: 275 VEIAPAPTLNPTVRDKMTEHAIRLAKHVGYGNAGTVEFLVDETGNFYFIEVNARLQVEHT 334
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ Q+KI PQG AIQC + TEDP ++FQP TGR+
Sbjct: 335 VTEEITGIDLVQSQIRIAEGITLPELGMTQDKIKPQGFAIQCRVTTEDPAKSFQPDTGRI 394
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM RAL E +V G
Sbjct: 395 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCAKMNRALREFRVRG 454
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G ++T FID+NPQL + Q R K+L +IG LVNGP
Sbjct: 455 VKTNIPFLLNVLENQKFLNGN-VDTYFIDENPQLFQFQPSQN-RAQKLLNYIGTVLVNGP 512
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL ++KP + P + +I D +I P+ G+R
Sbjct: 513 TTPLATSLKPAEIRPYV---------------------PQIAMD-----VINPPK--GFR 544
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+L+ G F VR+ K +L DTT+RDAHQSLLATRVR++DL
Sbjct: 545 NILKEKGPEAFAKAVRQHKGLLFMDTTYRDAHQSLLATRVRSHDL--------------- 589
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
LL +SPFVA++FNNLY+LE WGGA L+F
Sbjct: 590 -----LL------------------------ISPFVAHKFNNLYALENWGGATFDVALRF 620
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R++IPNIPFQM+LRG + VGY+NY V FC LA Q G+DIFRVFD
Sbjct: 621 LHECPWERLEDMRKIIPNIPFQMLLRGANAVGYTNYPDNVVFKFCELAVQTGMDIFRVFD 680
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GMDA + G +VEA I Y GD+++P++KKY L YY +LA +LV++G
Sbjct: 681 SLNYLPNLILGMDAAGKAGG---VVEAAISYTGDISDPSRKKYDLKYYVNLADELVKAGT 737
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +L+ + R+K+P++ IH+HTHD +G+GVA+ LAC KAGAD+VD
Sbjct: 738 HVLSIKDMAGLLKPKAASMLVDAIRQKHPDVPIHIHTHDTSGSGVASMLACAKAGADVVD 797
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+CL+ + G DL DV +YS+YW + R L
Sbjct: 798 VAVDSMSGMTSQPSMGALVACLQGSPHETGFDLRDVSEYSAYWEQTRTL----------- 846
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YAPFEC T +K+ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 847 --------------------YAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLG 886
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KL DV+E A+++ FPKSV
Sbjct: 887 EFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLKPADVLEKAEELSFPKSV 946
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYREDEPF---- 1123
EF QG+IGEPYQGFP+ + KVL + P+ + +E P
Sbjct: 947 VEFLQGAIGEPYQGFPEPFRSKVLKDMPRINGRPGESLPPLDFAALKARLQESHPRITDK 1006
Query: 1124 -KMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMN 1182
M+ ++P+ T+ ++ F D FGPVDKL TRIF
Sbjct: 1007 DVMSAALYPEVTQDYLTFHDAFGPVDKLDTRIF--------------------------- 1039
Query: 1183 ELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHL 1242
LI PK +GEEF + G T + TL+++E L
Sbjct: 1040 -LIGPK----------------------------VGEEFEVTIEKGKTLGIKTLAMAEDL 1070
Query: 1243 NDHGERTVFFLYNG-LHTTNTYNLQQI--LKTSPSDVFAFLRLKSERIFLNGPNIGEEFS 1299
+GER VFF NG L + + + I L P K+++ + P G
Sbjct: 1071 TPNGEREVFFEMNGQLRSVFIKDKEAIKELHIHPKAS------KNDKNQIGAPMPGTVID 1124
Query: 1300 CEFKTGDT----AYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLK 1347
K GDT A + LS + E V G+++SLD N+ KL+
Sbjct: 1125 IRVKVGDTVEKGAALVVLSAMKM-----EMVVQAPRAGKIKSLDINQGMKLE 1171
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723520|ref|XP_003400137.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 2 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1209 (50%), Positives = 782/1209 (64%), Gaps = 149/1209 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K + +L+ANR E+AIRV RAC E+GI+SV IYSEQDK HR K D+ +++GKG+PPV
Sbjct: 34 KPIRSVLVANRGEIAIRVFRACTELGIRSVAIYSEQDKMQMHRQKADEGYVIGKGLPPVQ 93
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEI+ IAK N+VDAIHPGYGFLSER DFA+ VI AG+ FIGP+P V++ +GDKV
Sbjct: 94 AYLNIPEILKIAKENDVDAIHPGYGFLSERSDFAQEVINAGIRFIGPSPKVVQQMGDKVA 153
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA++A+VPI+PGT PVT ++ EFC + PVI KAA+GGGGRGMR+V + + +
Sbjct: 154 ARQAAIEAEVPIVPGTDGPVTTSEEAMEFCVKHGLPVIFKAAYGGGGRGMRVVRHMEEVR 213
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F+RA SEA A+FG M +EK+I+RPRHIEVQ+LGDK G+VVHLYERDCS+QRR+QKV
Sbjct: 214 EMFERASSEAAAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKV 273
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA + VR +TE +VRLAK +GYSNAGTVEFL D+ NFYFIEVN RLQVEHT
Sbjct: 274 VEIAPAPMLDPKVRAKMTEHAVRLAKHVGYSNAGTVEFLADESGNFYFIEVNARLQVEHT 333
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ Q+KI PQG AIQC + TEDP +NFQP TGR+
Sbjct: 334 VTEEITGIDLVQSQIRIAEGITLPELGMTQDKIVPQGFAIQCRVTTEDPAKNFQPDTGRI 393
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM RAL E +V G
Sbjct: 394 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCSKMNRALREFRVRG 453
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G ++T FID+NPQL E + Q R K+L ++G LVNGP
Sbjct: 454 VKTNIPFLLNVLENQKFLNGN-VDTYFIDENPQLFEFHPSQN-RAQKLLNYLGTVLVNGP 511
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL +KP + P I + F A ++ D D +++ P+ G+R
Sbjct: 512 STPLATPLKPAEIKPHIPQVALDFAKFAA---------AEESNDPDASDILEPPK--GFR 560
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+ + G F +VR
Sbjct: 561 HIYK--------------------------------------------EQGPEAFAKAVR 576
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
+ K +LL DTTFRDAHQSLLATRVR++DL +SPFVA++FNNLYSLE WGGA L+F
Sbjct: 577 QHKGLLLMDTTFRDAHQSLLATRVRSHDLLTISPFVAHKFNNLYSLENWGGATFDVALRF 636
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA Q G+D+FRVFD
Sbjct: 637 LHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVYKFCELAVQTGMDVFRVFD 696
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GM+A + G IVEA I Y GD+++PN+KKY L YY DLA +LV++G
Sbjct: 697 SLNYLPNLILGMEAAGKAGG---IVEAAISYTGDVSDPNRKKYDLKYYTDLADELVKAGT 753
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +LI + R+K+P++ IHVHTHD AG GVA+ LAC ++GAD+VD
Sbjct: 754 HVLAVKDMAGLLKPKAAVMLIDAIRQKHPDVPIHVHTHDTAGAGVASMLACAESGADVVD 813
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+ L T K +DL D+ +
Sbjct: 814 VAVDSMSGMTSQPSMGAVVASLIGTPKDTQLDLSDISE---------------------- 851
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YS+YW + R LYAPFECT +K+ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 852 ---------YSAYWEQTRTLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLG 902
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KLS DV+ A+++ FPKSV
Sbjct: 903 EFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLSADDVLNKAEELSFPKSV 962
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYREDEPFKMNK 1127
EF QG+IGEP+ GFP+ + KVL + A P+ + + +E P NK
Sbjct: 963 VEFLQGAIGEPHGGFPEPFRSKVLKDMPRVKGRPGASLPPLDFDALKSELKETYPHVSNK 1022
Query: 1128 LIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFP 1187
I M+ ++P
Sbjct: 1023 DI---------------------------------------------------MSAALYP 1031
Query: 1188 KATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGE 1247
+ T +++FR++FGPVD+L TRIFL G +GEEF + G T + TL+I+E L +GE
Sbjct: 1032 QVTNDYLRFREQFGPVDRLETRIFLTGAKVGEEFDVTIERGKTLAIKTLAIAEDLTPNGE 1091
Query: 1248 RTVFFLYNG 1256
R VFF NG
Sbjct: 1092 REVFFEMNG 1100
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307199786|gb|EFN80232.1| Pyruvate carboxylase, mitochondrial [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/1260 (49%), Positives = 809/1260 (64%), Gaps = 152/1260 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
+ + +L+ANR E+A+RV RAC E+GI+SV IYSEQDK HR K D+ +LVG+G+PPV
Sbjct: 103 RPIRSVLVANRGEIAVRVFRACTELGIRSVAIYSEQDKMQMHRQKADEGYLVGRGLPPVQ 162
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEII +AK N+VDAIHPGYGFLSER DFA+AV AG+ FIGP+P V++ +GDKV
Sbjct: 163 AYLNIPEIIQVAKENDVDAIHPGYGFLSERSDFAQAVTDAGIRFIGPSPKVVQQMGDKVA 222
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA+ A VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + +
Sbjct: 223 ARQAAIAAGVPIVPGTDGPVTTSDEAMEFCMKHGLPVIFKAAYGGGGRGMRVVRQMEEVR 282
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F RA SEA A+FG M +EK+I+RPRHIEVQ+LGD G+VVHLYERDCS+QRR+QKV
Sbjct: 283 EMFDRASSEAAAAFGNGAMFIEKFIERPRHIEVQLLGDHAGNVVHLYERDCSVQRRHQKV 342
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA +S VR+ +TE +V+LA+ +GYSNAGTVEFL+D+ NFYFIEVN RLQVEHT
Sbjct: 343 VEIAPAPALSAKVREKMTEHAVKLARHVGYSNAGTVEFLVDETGNFYFIEVNARLQVEHT 402
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ QEKI PQG AIQC + TEDP +NFQP TGR+
Sbjct: 403 VTEEITGIDLVQSQIRIAEGMTLPELGMTQEKIIPQGFAIQCRVTTEDPAKNFQPDTGRI 462
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM R L E +V G
Sbjct: 463 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCAKMNRVLREFRVRG 522
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G ++T FID+NPQL + + Q R K+L +IG LVNGP
Sbjct: 523 VKTNIPFLLNVLENQKFLNG-IVDTYFIDENPQLFQFHPSQN-RAQKLLNYIGTVLVNGP 580
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL +KP ++ P I + F A ++ D D ++ P+ G+R
Sbjct: 581 STPLATQLKPADIKPHIPQIALDFAKLAA---------AEETNDPDAPDILDPPK--GFR 629
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+ + G F ++R
Sbjct: 630 HIYK--------------------------------------------EQGPEAFAKAIR 645
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
+ K +LL DTTFRDAHQSLLATRVR++DL +SPFVA++F+NLYSLE WGGA L+F
Sbjct: 646 QHKGLLLMDTTFRDAHQSLLATRVRSHDLLMISPFVAHKFSNLYSLENWGGATFDVALRF 705
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA + G+DIFRVFD
Sbjct: 706 LHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVFKFCELAVRTGMDIFRVFD 765
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GM+A + G IVEA I Y GD+++P++ KY+L YY DLA +LV++G
Sbjct: 766 SLNYLPNLIIGMEAAGEAGG---IVEAAISYTGDVSDPSRTKYNLKYYTDLADELVKAGT 822
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +LI + R+K+P++ +H+HTHD AG GVA+ LAC ++GAD+VD
Sbjct: 823 HVLAIKDMAGLLKPKAAGILIDAIRQKHPDVPLHIHTHDTAGAGVASMLACARSGADVVD 882
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+ L+ TD ID
Sbjct: 883 VAVDSMSGMTSQPSMGAVVASLQGTD----ID---------------------------T 911
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
++L DV +YS+YW + R LYAPFECT +++ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 912 KLNLPDVSEYSAYWEQTRTLYAPFECTTTMRSGNADVYLNEIPGGQYTNLQFQAYSLGLG 971
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KL+ DV A+++ FPKSV
Sbjct: 972 EFFEDVKKAYRHANLLLGDIIKVTPSSKVVGDLAQFMVQNKLTAEDVQNKAEELSFPKSV 1031
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131
EF QG+IGEP+ GFP+ L+ KVL +D P + P
Sbjct: 1032 VEFLQGAIGEPHGGFPEPLRSKVL-----------------------KDMPRVQGR---P 1065
Query: 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERK-AEFDPIMACDCRENEPVKMNELIFPKAT 1190
A+ P+D F AL+++ E P M+ E M+ ++PK T
Sbjct: 1066 GAS---------LAPLD-------FVALKKELQESHPHMS------EKDVMSAALYPKVT 1103
Query: 1191 KKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTV 1250
K ++ F+++FGPVDKL TRIFL G +GE F + G T + TL+++E L +GER V
Sbjct: 1104 KDYLSFKEQFGPVDKLETRIFLTGAKVGEVFDVTIERGKTLGIKTLAVAEDLTKNGEREV 1163
Query: 1251 FFLYNG-LHTTNTYNLQQI--LKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDT 1307
FF NG L + + + + L P KS++ L P GE K GDT
Sbjct: 1164 FFEMNGQLRSVFIKDKEAVKELHVHPKAT------KSDKNQLGAPMPGEVIDIRVKVGDT 1217
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350426414|ref|XP_003494430.1| PREDICTED: pyruvate carboxylase, mitochondrial-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1209 (50%), Positives = 779/1209 (64%), Gaps = 149/1209 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K + +L+ANR E+AIRV RAC E+GI+SV IYSEQDK HR K D+ +++GKG+PPV
Sbjct: 34 KPIRSVLVANRGEIAIRVFRACTELGIRSVAIYSEQDKMQMHRQKADEGYVIGKGLPPVQ 93
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYLNIPEI+ IAK N+VDAIHPGYGFLSER DFA+ VI AG+ FIGP+P V++ +GDKV
Sbjct: 94 AYLNIPEILKIAKENDVDAIHPGYGFLSERSDFAQEVINAGIRFIGPSPKVVQQMGDKVA 153
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA++A VPI+PGT PVT D+ EFC + PVI KAA+GGGGRGMR+V + + +
Sbjct: 154 ARQAAIEAGVPIVPGTDGPVTTSDEAMEFCVKHGLPVIFKAAYGGGGRGMRVVRHMEEVR 213
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F+RA SEA A+FG M +EK+I+RPRHIEVQ+LGDK G+VVHLYERDCS+QRR+QKV
Sbjct: 214 EMFERASSEAAAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKV 273
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA + VR +TE +VRLAK +GYSNAGTVEFL D+ NFYFIEVN RLQVEHT
Sbjct: 274 VEIAPAPMLDPKVRAKMTEHAVRLAKHVGYSNAGTVEFLADESGNFYFIEVNARLQVEHT 333
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID+VQSQI+IA+G +L ELG+ Q+KI PQG AIQC + TEDP +NFQP TGR+
Sbjct: 334 VTEEITGIDLVQSQIRIAEGITLPELGMTQDKIAPQGFAIQCRVTTEDPAKNFQPDTGRI 393
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+VF +GIR+D + + G ISP YDSLL K+I H +SSC KM RAL E +V G
Sbjct: 394 EVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAGDLQSSCAKMNRALREFRVRG 453
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGP 534
V TN+PFLLNV +++KFL+G ++T FID+NPQL + Q R K+L ++G LVNGP
Sbjct: 454 VKTNIPFLLNVLENQKFLNGN-VDTYFIDENPQLFQFQPSQN-RAQKLLNYLGTVLVNGP 511
Query: 535 MTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
TPL +KP + P I + F A ++ D D +++ P+ G+R
Sbjct: 512 STPLATPLKPAEIKPHIPQVALDFAKFAA---------AEESNDPDAPDILEPPK--GFR 560
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVR 654
+ + G F +VR
Sbjct: 561 HIYK--------------------------------------------EQGPEAFAKAVR 576
Query: 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF 714
+ K +LL DTTFRDAHQSLLATRVR++DL +SPFVA++FNNLYSLE WGGA L+F
Sbjct: 577 QHKGLLLMDTTFRDAHQSLLATRVRSHDLLTISPFVAHKFNNLYSLENWGGATFDVALRF 636
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L ECPWERL ++R+ IPNIPFQM+LRG + VGY+NY V FC LA Q G+D+FRVFD
Sbjct: 637 LHECPWERLEDMRKAIPNIPFQMLLRGANAVGYTNYPDNVVYKFCELAVQTGMDVFRVFD 696
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN +PNL+ GM+A + G IVEA I Y GD+++PN+KKY L YY DLA +LV++G
Sbjct: 697 SLNYLPNLILGMEAAGKAGG---IVEAAISYTGDVSDPNRKKYDLKYYTDLADELVKAGT 753
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
VL +KDMAGLLKP AA +LI + R+K+P++ IHVHTHD AG GVA+ LAC ++GAD+VD
Sbjct: 754 HVLAVKDMAGLLKPKAAVMLIDAIRQKHPDVPIHVHTHDTAGAGVASMLACAESGADVVD 813
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
VA DSMSG+ SQP+MG +V+ L T K +DL D+ +
Sbjct: 814 VAVDSMSGMTSQPSMGAVVASLIGTPKDTRLDLRDISE---------------------- 851
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
YS+YW + R LYAPFECT +K+ +++ YL EIPGGQYTNL+F+ S GL
Sbjct: 852 ---------YSAYWEQTRTLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLG 902
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
FEDVK+AYR AN LLGDIIK TPSSKVV DLA FM Q KLS DV+ A+++ FPKSV
Sbjct: 903 EFFEDVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLSADDVLNKAEELSFPKSV 962
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPI----MACDYREDEPFKMNK 1127
EF QG+IGEP+ GFP+ + KVL + A P+ + + +E P NK
Sbjct: 963 VEFLQGAIGEPHGGFPEPFRSKVLKDMPRVKGRPGASLPPLDFEALKSELKETYPHVSNK 1022
Query: 1128 LIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFP 1187
I M+ ++P
Sbjct: 1023 DI---------------------------------------------------MSAALYP 1031
Query: 1188 KATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGE 1247
+ T ++ FR++FGPVD+L TRIFL G +GEEF + G T + TL+I+E L +GE
Sbjct: 1032 QVTNDYLSFREQFGPVDRLETRIFLTGAKVGEEFDVTIERGKTLAIKTLAIAEDLTPNGE 1091
Query: 1248 RTVFFLYNG 1256
R VFF NG
Sbjct: 1092 REVFFEMNG 1100
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1427 | ||||||
| FB|FBgn0027580 | 1197 | CG1516 [Drosophila melanogaste | 0.426 | 0.507 | 0.523 | 2.60000000692e-316 | |
| ZFIN|ZDB-GENE-090908-3 | 1181 | pcl "pyruvate carboxylase, lik | 0.361 | 0.436 | 0.526 | 9.5e-308 | |
| ZFIN|ZDB-GENE-000831-1 | 1181 | pc "pyruvate carboxylase" [Dan | 0.345 | 0.417 | 0.549 | 1.4e-306 | |
| UNIPROTKB|Q29RK2 | 1178 | PC "Pyruvate carboxylase, mito | 0.345 | 0.418 | 0.531 | 9.8e-302 | |
| RGD|3262 | 1178 | Pc "pyruvate carboxylase" [Rat | 0.345 | 0.418 | 0.531 | 1.6e-299 | |
| MGI|MGI:97520 | 1178 | Pcx "pyruvate carboxylase" [Mu | 0.345 | 0.418 | 0.533 | 2.6e-299 | |
| UNIPROTKB|P11498 | 1178 | PC "Pyruvate carboxylase, mito | 0.345 | 0.418 | 0.533 | 7.9e-298 | |
| WB|WBGene00004258 | 1175 | pyc-1 [Caenorhabditis elegans | 0.344 | 0.417 | 0.529 | 4.9e-283 | |
| POMBASE|SPBC17G9.11c | 1185 | pyr1 "pyruvate carboxylase Pyr | 0.331 | 0.399 | 0.463 | 7.5e-260 | |
| UNIPROTKB|F1P6G9 | 1178 | PC "Pyruvate carboxylase" [Can | 0.345 | 0.418 | 0.531 | 1.1e-259 |
| FB|FBgn0027580 CG1516 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1625 (577.1 bits), Expect = 2.6e-316, Sum P(3) = 2.6e-316
Identities = 329/628 (52%), Positives = 435/628 (69%)
Query: 15 FLGATRHAMKSLTRWIRPNLLVQQQRFPVRRCGCXXXXXXXTMEKILIANRSEVAIRVAR 74
F+ A + A ++L R +P + + + + G + +L+ANR E+AIRV R
Sbjct: 2 FIPAAQSAYRTL-RKTQPRVRLNA----IFKNGYSSKVEYKPIRSVLVANRGEIAIRVFR 56
Query: 75 ACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134
AC E+GIKSV +YSEQDK HR K D++++VGKG+PPV AYLNIPE+I + K N+VDA+
Sbjct: 57 ACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNIPELIRVCKENDVDAV 116
Query: 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPV 194
HPGYGFLSER DFA+AVI AGL FIGP+P V++ +GDKV AR AA++A VPI+PGT PV
Sbjct: 117 HPGYGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVAAIEAGVPIVPGTDGPV 176
Query: 195 TDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDML 254
T ++ EFC + PVI KAA+ V + +EE+F+RA SEA A+FG M
Sbjct: 177 TTKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRASSEAKAAFGNGAMF 236
Query: 255 VEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITET 314
+EK+I+RPRHIEVQ+LGDK G+VVHLYERDCS+QRR+QKV++IAPA + + +RD +TE
Sbjct: 237 IEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEA 296
Query: 315 SVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374
+VRLA+ +GY NAGTVEFL D+ NFYFIEVN RLQVEHT++EEITGID+VQSQI++A+G
Sbjct: 297 AVRLARHVGYENAGTVEFLCDESGNFYFIEVNARLQVEHTVTEEITGIDLVQSQIRVAEG 356
Query: 375 KSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYP 434
+L ELG Q+KI P+G AIQC + TEDP +FQP+TGRL+VF +GIR+DS+ Y
Sbjct: 357 MTLPELGYTQDKIVPRGYAIQCRVTTEDPANDFQPNTGRLEVFRSGEGMGIRLDSASAYA 416
Query: 435 GLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSG 494
G ISP YDSLL K+I H + +SS KM RAL E ++ GV TN+PFLLNV +++KFL G
Sbjct: 417 GAIISPYYDSLLVKVISHASDLQSSASKMNRALREFRIRGVKTNIPFLLNVLENQKFLHG 476
Query: 495 EALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVIDRT 554
L+T FID++PQL + R K+L ++GE LVNGP TPL +KP V P +
Sbjct: 477 -VLDTYFIDEHPQLFKFKPSLN-RAQKLLNYMGEVLVNGPQTPLATTLKPALVSPHVP-- 532
Query: 555 VSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKH 614
+ D++ + R + E + + P+ G R++L G F VR K
Sbjct: 533 ---------EVPLDLSPEAIEREERGEAKVTEPPK--GLREVLVCEGPEAFAKEVRNRKE 581
Query: 615 VLLTDTTFRDAHQSLLATRVRTYDLKKV 642
+LL DTTFRDAHQSLLATRVR++DL K+
Sbjct: 582 LLLMDTTFRDAHQSLLATRVRSHDLLKI 609
|
|
| ZFIN|ZDB-GENE-090908-3 pcl "pyruvate carboxylase, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1432 (509.1 bits), Expect = 9.5e-308, Sum P(4) = 9.5e-308
Identities = 274/520 (52%), Positives = 368/520 (70%)
Query: 34 LLVQQQRFPVRRCGCXX--XXXXXTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQD 91
LL ++ + + RC ++K+++ANR E+AIRV RAC E+GI++V +YSEQD
Sbjct: 14 LLAMRRVWSLTRCAHTAPQTLEYKPIKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQD 73
Query: 92 KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAV 151
HR K D+A+L+GKG+PPVAAYL+IP+II +AK NNVDAIHPGYGFLSER DFA+A
Sbjct: 74 TGQMHRQKADEAYLIGKGLPPVAAYLHIPDIIKVAKANNVDAIHPGYGFLSERADFAQAC 133
Query: 152 IGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV 211
+ AG+ FIGP P+V++ +GDKV AR A+ A VP++PGT P++ + + +EF + FP+
Sbjct: 134 VDAGVRFIGPTPDVVRKMGDKVQARAIAISAGVPVVPGTDAPISCLQEAQEFSNSYGFPI 193
Query: 212 ILKAAFXXXXXXXXXVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILG 271
I KAA+ V + +EEN++RA SEALA+FG + VEK+I++PRHIEVQILG
Sbjct: 194 IFKAAYGGGGRGMRVVREYEELEENYQRAYSEALAAFGNGALFVEKFIEKPRHIEVQILG 253
Query: 272 DKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVE 331
DKYG+V+HLYERDCS+QRR+QKV++IAPA + +RD +T SV LA+ +GY NAGTVE
Sbjct: 254 DKYGNVIHLYERDCSIQRRHQKVVEIAPATQLDPHLRDRLTADSVNLARQVGYENAGTVE 313
Query: 332 FLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQG 391
FL+DK YFIEVN RLQVEHT++EEIT +D+V +Q+++ +G+SL ELGL Q+KI G
Sbjct: 314 FLVDKHGKHYFIEVNSRLQVEHTVTEEITDVDLVHAQLRVCEGRSLPELGLKQDKIRING 373
Query: 392 CAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451
AIQC + TEDP R FQP TGRL+VF +GIR+DS+ + G ISP YDSLL K+I
Sbjct: 374 YAIQCRVTTEDPARGFQPDTGRLEVFRSGEGMGIRLDSASAFQGAVISPHYDSLLVKVIA 433
Query: 452 HTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLER 511
++ KM RAL E +V GV TN+PFL NV + +FL+G ++T FID+N L
Sbjct: 434 SGKDLPAASAKMSRALAEFRVRGVKTNIPFLQNVLSNNQFLNG-TVDTQFIDENSDLFNL 492
Query: 512 NSYQTCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVI 551
Q R K+L ++G +VNGP TP+ V KP +DPVI
Sbjct: 493 KPVQN-RAQKLLHYLGHVMVNGPTTPIPVKAKPSPIDPVI 531
|
|
| ZFIN|ZDB-GENE-000831-1 pc "pyruvate carboxylase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1435 (510.2 bits), Expect = 1.4e-306, Sum P(4) = 1.4e-306
Identities = 272/495 (54%), Positives = 360/495 (72%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+++ANR E+AIRV RAC E+GI++V +YSEQD HR K D+A+L+G+G+ PVAAY
Sbjct: 39 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLSPVAAY 98
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+IP+II +AK NNVDAIHPGYGFLSER DFA+A AG+ FIGP+P V++ +GDKV AR
Sbjct: 99 LHIPDIIKVAKENNVDAIHPGYGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEAR 158
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+KA VP++PGT P++ + + +EF +FP+I KAA+ V N + +EEN
Sbjct: 159 ALAIKAGVPVVPGTDAPISCLQEAQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEELEEN 218
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
++RA SEALA+FG + VEK+I++PRHIEVQILGDKYG+V+HLYERDCS+QRR+QKV++
Sbjct: 219 YQRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDKYGNVIHLYERDCSIQRRHQKVVE 278
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA + +RD +T SV LAK +GY NAGTVEFL+DK YFIEVN RLQVEHT++
Sbjct: 279 IAPAAHLDSHLRDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKHYFIEVNSRLQVEHTVT 338
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEIT +D+V +Q+++ +G+SL ELGL Q+KI GCAIQC + TEDP R FQP TGR++V
Sbjct: 339 EEITDVDLVHAQLRVCEGRSLPELGLEQDKIQINGCAIQCRVTTEDPSRGFQPDTGRIEV 398
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
F +GIR+DS+ + G ISP YDSLL K+I ++ KM RAL E +V GV
Sbjct: 399 FRSGEGMGIRLDSASAFQGAIISPHYDSLLVKVIASGKDLPTAATKMHRALTEFRVRGVK 458
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PFL NV + +FL ++T FID+N L Q R K+L ++G +VNGPMT
Sbjct: 459 TNIPFLQNVLSNSQFLYA-TVDTQFIDENQNLFNLKPTQN-RAQKLLHYLGHVMVNGPMT 516
Query: 537 PLYVNVKPVNVDPVI 551
P+ V KP VDPVI
Sbjct: 517 PIPVKAKPSPVDPVI 531
|
|
| UNIPROTKB|Q29RK2 PC "Pyruvate carboxylase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1418 (504.2 bits), Expect = 9.8e-302, Sum P(4) = 9.8e-302
Identities = 263/495 (53%), Positives = 362/495 (73%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+++ANR E+AIRV RAC E+GI++V +YSEQD HR K D+A+L+G+G+ PV AY
Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+IP+II +AK NNVDA+HPGYGFLSER DFA+A AG+ FIGP+P V++ +GDKV AR
Sbjct: 97 LHIPDIIKVAKENNVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEAR 156
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+ A VP++PGT P+T + + EF + FP+I KAA+ V + + +EEN
Sbjct: 157 AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEEN 216
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG+++HLYERDCS+QRR+QKV++
Sbjct: 217 YTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVE 276
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA + +R +T SV+LAK +GY NAGTVEFL+D+ YFIEVN RLQVEHT++
Sbjct: 277 IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVNSRLQVEHTVT 336
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEIT +D+V +QI +A+G+SL +LGL QE I GCAIQC + TEDP R+FQP TGR++V
Sbjct: 337 EEITDVDLVHAQIHVAEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEV 396
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
F +GIR+D++ + G ISP YDSLL K+I H + ++ KM RAL E +V GV
Sbjct: 397 FRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVK 456
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PFL NV ++++FL+G ++T FID+NP+L + Q R K+L ++G +VNGP T
Sbjct: 457 TNIPFLQNVLNNQQFLAG-TVDTQFIDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTT 514
Query: 537 PLYVNVKPVNVDPVI 551
P+ V P DP++
Sbjct: 515 PIPVKASPSPTDPIV 529
|
|
| RGD|3262 Pc "pyruvate carboxylase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1417 (503.9 bits), Expect = 1.6e-299, Sum P(4) = 1.6e-299
Identities = 263/495 (53%), Positives = 362/495 (73%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+++ANR E+AIRV RAC E+GI++V +YSEQD HR K D+A+L+G+G+ PV AY
Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+IP+II +AK N VDA+HPGYGFLSER DFA+A AG+ FIGP+P V++ +GDKV AR
Sbjct: 97 LHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEAR 156
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+ A VP++PGT P+ + + EF + FP+I KAA+ V + + +EEN
Sbjct: 157 AIAIAAGVPVVPGTNSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEEN 216
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG+++HLYERDCS+QRR+QKV++
Sbjct: 217 YTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVE 276
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA + +R +T SV+LAK +GY NAGTVEFL+DK YFIEVN RLQVEHT++
Sbjct: 277 IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVNSRLQVEHTVT 336
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEIT +D+V +QI +++G+SL +LGL QE I GCAIQC + TEDP R+FQP TGR++V
Sbjct: 337 EEITDVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEV 396
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
F +GIR+D++ + G ISP YDSLL K+I H + ++ KM RAL E +V GV
Sbjct: 397 FRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVK 456
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PFL NV ++++FL+G ++T FID+NP+L + Q R K+L ++G +VNGP T
Sbjct: 457 TNIPFLQNVLNNQQFLAG-IVDTQFIDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTT 514
Query: 537 PLYVNVKPVNVDPVI 551
P+ V V P VDP++
Sbjct: 515 PIPVKVSPSPVDPIV 529
|
|
| MGI|MGI:97520 Pcx "pyruvate carboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1421 (505.3 bits), Expect = 2.6e-299, Sum P(4) = 2.6e-299
Identities = 264/495 (53%), Positives = 363/495 (73%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+++ANR E+AIRV RAC E+GI++V +YSEQD HR K D+A+L+G+G+ PV AY
Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+IP+II +AK N VDA+HPGYGFLSER DFA+A AG+ FIGP+P V++ +GDKV AR
Sbjct: 97 LHIPDIIKVAKENGVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEAR 156
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+ A VP++PGT P++ + + EF + FP+I KAA+ V + + +EEN
Sbjct: 157 AIAIAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEELEEN 216
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG+++HLYERDCS+QRR+QKV++
Sbjct: 217 YTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVE 276
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA + +R +T SV+LAK +GY NAGTVEFL+DK YFIEVN RLQVEHT++
Sbjct: 277 IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVNSRLQVEHTVT 336
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEIT +D+V +QI +++G+SL +LGL QE I GCAIQC + TEDP R+FQP TGR++V
Sbjct: 337 EEITDVDLVHAQIHVSEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEV 396
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
F +GIR+D++ + G ISP YDSLL K+I H + ++ KM RAL E +V GV
Sbjct: 397 FRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVK 456
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PFL NV ++++FL+G ++T FID+NP+L + Q R K+L ++G +VNGP T
Sbjct: 457 TNIPFLQNVLNNQQFLAG-TVDTQFIDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTT 514
Query: 537 PLYVNVKPVNVDPVI 551
P+ VNV P VDP +
Sbjct: 515 PIPVNVSPSPVDPAV 529
|
|
| UNIPROTKB|P11498 PC "Pyruvate carboxylase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1412 (502.1 bits), Expect = 7.9e-298, Sum P(4) = 7.9e-298
Identities = 264/495 (53%), Positives = 361/495 (72%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+++ANR E+AIRV RAC E+GI++V IYSEQD HR K D+A+L+G+G+ PV AY
Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+IP+II +AK NNVDA+HPGYGFLSER DFA+A AG+ FIGP+P V++ +GDKV AR
Sbjct: 97 LHIPDIIKVAKENNVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEAR 156
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+ A VP++PGT P+T + + EF + FP+I KAA+ V + + +EEN
Sbjct: 157 AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEEN 216
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG+++HLYERDCS+QRR+QKV++
Sbjct: 217 YTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVE 276
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA + +R +T SV+LAK +GY NAGTVEFL+D+ YFIEVN RLQVEHT++
Sbjct: 277 IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVNSRLQVEHTVT 336
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEIT +D+V +QI +A+G+SL +LGL QE I GCAIQC + TEDP R+FQP TGR++V
Sbjct: 337 EEITDVDLVHAQIHVAEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEV 396
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
F +GIR+D++ + G ISP YDSLL K+I H + ++ KM RAL E +V GV
Sbjct: 397 FRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVK 456
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+ FL NV ++++FL+G ++T FID+NP+L + Q R K+L ++G +VNGP T
Sbjct: 457 TNIAFLQNVLNNQQFLAG-TVDTQFIDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTT 514
Query: 537 PLYVNVKPVNVDPVI 551
P+ V P DPV+
Sbjct: 515 PIPVKASPSPTDPVV 529
|
|
| WB|WBGene00004258 pyc-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1352 (481.0 bits), Expect = 4.9e-283, Sum P(3) = 4.9e-283
Identities = 261/493 (52%), Positives = 352/493 (71%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLN 118
K+++ANR E+AIRV RA E+ SV IY+EQDK S HR K D+A+LVGKG+PPVAAYL
Sbjct: 34 KVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMHRLKADEAYLVGKGLPPVAAYLT 93
Query: 119 IPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDA 178
I +II A +N+DAIHPGYGFLSER DFA A AG+ FIGP+P+V+ +GDKV AR A
Sbjct: 94 IDQIIETALKHNIDAIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKVAARQA 153
Query: 179 ALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEENFK 238
A++A V ++PGT P+T D+ EF + P+ILKAA+ V + +EE F+
Sbjct: 154 AIEAGVQVVPGTPGPITTADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLEEVEEAFR 213
Query: 239 RAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIA 298
R+ SEA A+FG + VEK+++RPRHIEVQ+LGD +G++VHLYERDCS+QRR+QKV++IA
Sbjct: 214 RSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYERDCSVQRRHQKVVEIA 273
Query: 299 PAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEE 358
PA + VR+ I ++RLA+ +GY NAGTVEFL+D+ N+YFIEVN RLQVEHT++EE
Sbjct: 274 PAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIEVNARLQVEHTVTEE 333
Query: 359 ITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFT 418
ITG+D+VQ+QI+IA+GKSL +L L QE I G AIQC + TEDP + FQP +GR++VF
Sbjct: 334 ITGVDLVQAQIRIAEGKSLDDLKLSQETIQTTGSAIQCRVTTEDPAKGFQPDSGRIEVFR 393
Query: 419 DPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTN 478
+GIR+DS+ + G ISP YDSL+ K+I + ++ KM RAL++ ++ GV TN
Sbjct: 394 SGEGMGIRLDSASAFAGSVISPHYDSLMVKVIASARNHPNAAAKMIRALKKFRIRGVKTN 453
Query: 479 LPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMTPL 538
+PFLLNV FL +++T FID++P+L + Q R K+L ++GE VNGP TPL
Sbjct: 454 IPFLLNVLRQPSFLDA-SVDTYFIDEHPELFQFKPSQN-RAQKLLNYLGEVKVNGPTTPL 511
Query: 539 YVNVKPVNVDPVI 551
++KP V P I
Sbjct: 512 ATDLKPAVVSPPI 524
|
|
| POMBASE|SPBC17G9.11c pyr1 "pyruvate carboxylase Pyr1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 7.5e-260, Sum P(4) = 7.5e-260
Identities = 221/477 (46%), Positives = 327/477 (68%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGK-GM-PPVAAY 116
K+L+ANRSE+AIRV R +E+ + +V IYS +D+ S HR K D+++ +GK G PV AY
Sbjct: 35 KVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQKADESYPIGKVGQYSPVGAY 94
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L I EI+ IAK + +HPGYGFLSE +FA+ V AG++F+GP+P V+ +LGDK AR
Sbjct: 95 LAIDEIVSIAKRTGANLVHPGYGFLSENAEFARKVNEAGMQFVGPSPEVIDSLGDKTKAR 154
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A++ VP++PGT PV ++ + F E PVI+KAA V + D ++E+
Sbjct: 155 AIAIRCGVPVVPGTPGPVEHYEEAEAFVKEYGLPVIIKAAMGGGGRGMRVVRSADTLKES 214
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+RA+SEALASFG + +E+++D+P+HIE+Q++ DK G+V+HL+ERDCS+QRR+QKV++
Sbjct: 215 FERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHERDCSVQRRHQKVVE 274
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA+D+ +R A+ + ++++AK + Y NAGT EFLLD+ YFIE+NPR+QVEHT++
Sbjct: 275 IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLDQKGRHYFIEINPRIQVEHTIT 334
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEITG+D+V +Q+ +A G +L E+GL Q+KI+ +G AIQC + TEDP F P G+++V
Sbjct: 335 EEITGVDIVSAQLHVAAGFTLPEIGLTQDKISTRGFAIQCRVTTEDPNNGFAPDIGKIEV 394
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ G+R+D + + G I+P YDS+L K H ATY+ + KM R+L E +V GV
Sbjct: 395 YRSAGGNGVRLDGANGFAGSVITPHYDSMLVKCTCHDATYEYTRRKMIRSLIEFRVRGVK 454
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
TN+PF+L + F+ G T FIDD P+L + + R K+L ++G+ VNG
Sbjct: 455 TNIPFVLRLLMHDTFIQGNCW-TTFIDDTPELFQLYRSRN-RAQKLLAYLGDLAVNG 509
|
|
| UNIPROTKB|F1P6G9 PC "Pyruvate carboxylase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1415 (503.2 bits), Expect = 1.1e-259, Sum P(3) = 1.1e-259
Identities = 263/495 (53%), Positives = 362/495 (73%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++K+++ANR E+AIRV RAC E+GI++V +YSEQD HR K D+A+L+G+G+ PV AY
Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+IP+II +AK NNVDA+HPGYGFLSER DFA+A AG+ FIGP+P V++ +GDKV AR
Sbjct: 97 LHIPDIIKVAKENNVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEAR 156
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFXXXXXXXXXVANKDAIEEN 236
A+ A VP++PGT P+T + + EF + FP+I KAA+ V + + +EE+
Sbjct: 157 AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEES 216
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ RA SEALA+FG + VEK+I++PRHIEVQILGD+YG+++HLYERDCS+QRR+QKV++
Sbjct: 217 YNRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVE 276
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAPA + +R +T SV+LAK +GY NAGTVEFL+D+ YFIEVN RLQVEHT++
Sbjct: 277 IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGRHYFIEVNSRLQVEHTVT 336
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
EEIT +D+V +QI +A+G+SL +LGL QE I GCAIQC + TEDP R+FQP TGR++V
Sbjct: 337 EEITDVDLVHAQIHVAEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEV 396
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
F +GIR+D++ + G ISP YDSLL K+I H + ++ KM RAL E +V GV
Sbjct: 397 FRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVK 456
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536
TN+PFL NV ++++FL+G ++T FID+NP+L + Q R K+L ++G +VNGP T
Sbjct: 457 TNIPFLQNVLNNQQFLAG-TVDTQFIDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTT 514
Query: 537 PLYVNVKPVNVDPVI 551
P+ V P DPV+
Sbjct: 515 PIPVKASPSPTDPVV 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q29RK2 | PYC_BOVIN | 6, ., 4, ., 1, ., 1 | 0.4705 | 0.7063 | 0.8556 | yes | N/A |
| O17732 | PYC1_CAEEL | 6, ., 4, ., 1, ., 1 | 0.4787 | 0.7021 | 0.8527 | yes | N/A |
| Q9KWU4 | PYC_BACSU | 6, ., 4, ., 1, ., 1 | 0.4010 | 0.7000 | 0.8702 | yes | N/A |
| Q9UUE1 | PYC_SCHPO | 6, ., 4, ., 1, ., 1 | 0.4134 | 0.7351 | 0.8852 | yes | N/A |
| P78992 | PYC_PICPA | 6, ., 4, ., 1, ., 1 | 0.4179 | 0.6986 | 0.8385 | yes | N/A |
| Q05920 | PYC_MOUSE | 6, ., 4, ., 1, ., 1 | 0.4615 | 0.7105 | 0.8607 | yes | N/A |
| P11498 | PYC_HUMAN | 6, ., 4, ., 1, ., 1 | 0.4650 | 0.7105 | 0.8607 | yes | N/A |
| Q9HES8 | PYC_ASPNG | 6, ., 4, ., 1, ., 1 | 0.4274 | 0.7042 | 0.8431 | yes | N/A |
| P32327 | PYC2_YEAST | 6, ., 4, ., 1, ., 1 | 0.4292 | 0.7035 | 0.8508 | yes | N/A |
| P52873 | PYC_RAT | 6, ., 4, ., 1, ., 1 | 0.4615 | 0.7105 | 0.8607 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1427 | |||
| PRK12999 | 1146 | PRK12999, PRK12999, pyruvate carboxylase; Reviewed | 0.0 | |
| PRK12999 | 1146 | PRK12999, PRK12999, pyruvate carboxylase; Reviewed | 0.0 | |
| COG1038 | 1149 | COG1038, PycA, Pyruvate carboxylase [Energy produc | 0.0 | |
| COG1038 | 1149 | COG1038, PycA, Pyruvate carboxylase [Energy produc | 0.0 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 0.0 | |
| PRK08591 | 451 | PRK08591, PRK08591, acetyl-CoA carboxylase biotin | 0.0 | |
| COG4770 | 645 | COG4770, COG4770, Acetyl/propionyl-CoA carboxylase | 0.0 | |
| PRK08654 | 499 | PRK08654, PRK08654, pyruvate carboxylase subunit A | 1e-173 | |
| COG0439 | 449 | COG0439, AccC, Biotin carboxylase [Lipid metabolis | 1e-171 | |
| PRK06111 | 450 | PRK06111, PRK06111, acetyl-CoA carboxylase biotin | 1e-168 | |
| PRK07178 | 472 | PRK07178, PRK07178, pyruvate carboxylase subunit A | 1e-165 | |
| TIGR00514 | 449 | TIGR00514, accC, acetyl-CoA carboxylase, biotin ca | 1e-163 | |
| PRK05586 | 447 | PRK05586, PRK05586, biotin carboxylase; Validated | 1e-158 | |
| PRK12833 | 467 | PRK12833, PRK12833, acetyl-CoA carboxylase biotin | 1e-150 | |
| PRK08463 | 478 | PRK08463, PRK08463, acetyl-CoA carboxylase subunit | 1e-148 | |
| PRK08462 | 445 | PRK08462, PRK08462, biotin carboxylase; Validated | 1e-146 | |
| TIGR02712 | 1201 | TIGR02712, urea_carbox, urea carboxylase | 1e-135 | |
| cd07937 | 275 | cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase an | 1e-126 | |
| PRK09282 | 592 | PRK09282, PRK09282, pyruvate carboxylase subunit B | 8e-86 | |
| pfam02786 | 211 | pfam02786, CPSase_L_D2, Carbamoyl-phosphate syntha | 5e-82 | |
| COG5016 | 472 | COG5016, COG5016, Pyruvate/oxaloacetate carboxyltr | 9e-82 | |
| TIGR01108 | 582 | TIGR01108, oadA, oxaloacetate decarboxylase alpha | 1e-77 | |
| PRK14040 | 593 | PRK14040, PRK14040, oxaloacetate decarboxylase; Pr | 1e-68 | |
| PRK12331 | 448 | PRK12331, PRK12331, oxaloacetate decarboxylase; Pr | 2e-67 | |
| PRK14041 | 467 | PRK14041, PRK14041, oxaloacetate decarboxylase; Pr | 3e-62 | |
| PRK12330 | 499 | PRK12330, PRK12330, oxaloacetate decarboxylase; Pr | 5e-61 | |
| cd03174 | 265 | cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas | 1e-60 | |
| PRK14042 | 596 | PRK14042, PRK14042, pyruvate carboxylase subunit B | 2e-54 | |
| PRK12581 | 468 | PRK12581, PRK12581, oxaloacetate decarboxylase; Pr | 3e-53 | |
| pfam02436 | 198 | pfam02436, PYC_OADA, Conserved carboxylase domain | 1e-48 | |
| pfam00289 | 108 | pfam00289, CPSase_L_chain, Carbamoyl-phosphate syn | 2e-41 | |
| smart00878 | 107 | smart00878, Biotin_carb_C, Biotin carboxylase C-te | 6e-37 | |
| pfam02785 | 107 | pfam02785, Biotin_carb_C, Biotin carboxylase C-ter | 8e-37 | |
| PRK12999 | 1146 | PRK12999, PRK12999, pyruvate carboxylase; Reviewed | 2e-34 | |
| COG1038 | 1149 | COG1038, PycA, Pyruvate carboxylase [Energy produc | 1e-33 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 5e-32 | |
| cd06850 | 67 | cd06850, biotinyl_domain, The biotinyl-domain or b | 2e-24 | |
| pfam13535 | 183 | pfam13535, ATP-grasp_4, ATP-grasp domain | 4e-19 | |
| pfam00682 | 236 | pfam00682, HMGL-like, HMGL-like | 1e-18 | |
| PRK09282 | 592 | PRK09282, PRK09282, pyruvate carboxylase subunit B | 2e-17 | |
| TIGR01369 | 1050 | TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth | 2e-17 | |
| COG4770 | 645 | COG4770, COG4770, Acetyl/propionyl-CoA carboxylase | 5e-17 | |
| COG0458 | 400 | COG0458, CarB, Carbamoylphosphate synthase large s | 5e-17 | |
| pfam00364 | 73 | pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | 3e-16 | |
| PRK12815 | 1068 | PRK12815, carB, carbamoyl phosphate synthase large | 6e-16 | |
| COG0511 | 140 | COG0511, AccB, Biotin carboxyl carrier protein [Li | 1e-15 | |
| TIGR01369 | 1050 | TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth | 5e-15 | |
| PRK14040 | 593 | PRK14040, PRK14040, oxaloacetate decarboxylase; Pr | 6e-14 | |
| TIGR00768 | 277 | TIGR00768, rimK_fam, alpha-L-glutamate ligases, Ri | 1e-12 | |
| PRK12767 | 326 | PRK12767, PRK12767, carbamoyl phosphate synthase-l | 2e-12 | |
| TIGR01205 | 315 | TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l | 3e-10 | |
| PRK05641 | 153 | PRK05641, PRK05641, putative acetyl-CoA carboxylas | 3e-10 | |
| pfam07478 | 201 | pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-t | 4e-10 | |
| PRK12815 | 1068 | PRK12815, carB, carbamoyl phosphate synthase large | 5e-10 | |
| TIGR02712 | 1201 | TIGR02712, urea_carbox, urea carboxylase | 7e-10 | |
| PLN02735 | 1102 | PLN02735, PLN02735, carbamoyl-phosphate synthase | 8e-10 | |
| COG1181 | 317 | COG1181, DdlA, D-alanine-D-alanine ligase and rela | 1e-09 | |
| TIGR02144 | 280 | TIGR02144, LysX_arch, Lysine biosynthesis enzyme L | 2e-09 | |
| TIGR01108 | 582 | TIGR01108, oadA, oxaloacetate decarboxylase alpha | 4e-09 | |
| PRK06549 | 130 | PRK06549, PRK06549, acetyl-CoA carboxylase biotin | 4e-09 | |
| PRK06019 | 372 | PRK06019, PRK06019, phosphoribosylaminoimidazole c | 7e-09 | |
| PRK01372 | 304 | PRK01372, ddl, D-alanine--D-alanine ligase; Review | 7e-09 | |
| cd06849 | 74 | cd06849, lipoyl_domain, Lipoyl domain of the dihyd | 9e-09 | |
| PRK05294 | 1066 | PRK05294, carB, carbamoyl phosphate synthase large | 1e-08 | |
| pfam02222 | 171 | pfam02222, ATP-grasp, ATP-grasp domain | 2e-08 | |
| COG0508 | 404 | COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena | 2e-08 | |
| PRK09282 | 592 | PRK09282, PRK09282, pyruvate carboxylase subunit B | 3e-08 | |
| PRK14042 | 596 | PRK14042, PRK14042, pyruvate carboxylase subunit B | 3e-08 | |
| COG0026 | 375 | COG0026, PurK, Phosphoribosylaminoimidazole carbox | 3e-08 | |
| cd06663 | 73 | cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_ | 4e-08 | |
| pfam08443 | 190 | pfam08443, RimK, RimK-like ATP-grasp domain | 5e-08 | |
| PRK05889 | 71 | PRK05889, PRK05889, putative acetyl-CoA carboxylas | 6e-08 | |
| COG0189 | 318 | COG0189, RimK, Glutathione synthase/Ribosomal prot | 1e-07 | |
| PRK11856 | 411 | PRK11856, PRK11856, branched-chain alpha-keto acid | 1e-07 | |
| PLN02735 | 1102 | PLN02735, PLN02735, carbamoyl-phosphate synthase | 2e-07 | |
| TIGR01161 | 352 | TIGR01161, purK, phosphoribosylaminoimidazole carb | 3e-07 | |
| PRK14573 | 809 | PRK14573, PRK14573, bifunctional D-alanyl-alanine | 3e-07 | |
| PRK09389 | 488 | PRK09389, PRK09389, (R)-citramalate synthase; Prov | 4e-07 | |
| cd07940 | 268 | cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase | 6e-07 | |
| PRK02186 | 887 | PRK02186, PRK02186, argininosuccinate lyase; Provi | 6e-07 | |
| PRK06302 | 155 | PRK06302, PRK06302, acetyl-CoA carboxylase biotin | 6e-07 | |
| PRK11855 | 547 | PRK11855, PRK11855, dihydrolipoamide acetyltransfe | 1e-06 | |
| TIGR01348 | 546 | TIGR01348, PDHac_trf_long, pyruvate dehydrogenase | 2e-06 | |
| PRK08225 | 70 | PRK08225, PRK08225, acetyl-CoA carboxylase biotin | 2e-06 | |
| PRK05294 | 1066 | PRK05294, carB, carbamoyl phosphate synthase large | 3e-06 | |
| COG0119 | 409 | COG0119, LeuA, Isopropylmalate/homocitrate/citrama | 3e-06 | |
| cd07943 | 263 | cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldo | 3e-06 | |
| cd07938 | 274 | cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl- | 5e-06 | |
| TIGR00973 | 494 | TIGR00973, leuA_bact, 2-isopropylmalate synthase, | 1e-05 | |
| TIGR03217 | 333 | TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerat | 2e-05 | |
| PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipo | 2e-05 | |
| TIGR01348 | 546 | TIGR01348, PDHac_trf_long, pyruvate dehydrogenase | 3e-05 | |
| PRK11855 | 547 | PRK11855, PRK11855, dihydrolipoamide acetyltransfe | 4e-05 | |
| PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipo | 4e-05 | |
| PRK08195 | 337 | PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydro | 4e-05 | |
| PRK01966 | 333 | PRK01966, ddl, D-alanyl-alanine synthetase A; Revi | 4e-05 | |
| PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipo | 6e-05 | |
| pfam13533 | 50 | pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like | 2e-04 | |
| TIGR02090 | 363 | TIGR02090, LEU1_arch, isopropylmalate/citramalate/ | 2e-04 | |
| PRK11858 | 378 | PRK11858, aksA, trans-homoaconitate synthase; Revi | 3e-04 | |
| COG0027 | 394 | COG0027, PurT, Formate-dependent phosphoribosylgly | 3e-04 | |
| cd07944 | 266 | cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate | 5e-04 | |
| PRK14040 | 593 | PRK14040, PRK14040, oxaloacetate decarboxylase; Pr | 6e-04 | |
| cd07945 | 280 | cd07945, DRE_TIM_CMS, Leptospira interrogans citra | 0.001 | |
| COG1821 | 307 | COG1821, COG1821, Predicted ATP-utilizing enzyme ( | 0.001 | |
| pfam02655 | 159 | pfam02655, ATP-grasp_3, ATP-grasp domain | 0.001 | |
| TIGR02660 | 365 | TIGR02660, nifV_homocitr, homocitrate synthase Nif | 0.001 | |
| TIGR00531 | 156 | TIGR00531, BCCP, acetyl-CoA carboxylase, biotin ca | 0.002 | |
| TIGR01142 | 380 | TIGR01142, purT, phosphoribosylglycinamide formylt | 0.002 | |
| cd07941 | 273 | cd07941, DRE_TIM_LeuA3, Desulfobacterium autotroph | 0.002 | |
| PRK00915 | 513 | PRK00915, PRK00915, 2-isopropylmalate synthase; Va | 0.002 | |
| PRK07051 | 80 | PRK07051, PRK07051, hypothetical protein; Validate | 0.004 | |
| PLN03228 | 503 | PLN03228, PLN03228, methylthioalkylmalate synthase | 0.004 |
| >gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 1327 bits (3437), Expect = 0.0
Identities = 515/1130 (45%), Positives = 700/1130 (61%), Gaps = 138/1130 (12%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K ++K+L+ANR E+AIR+ RA E+GI++V IYSE+DK S HR K D+A+L+G+G PV
Sbjct: 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVR 62
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYL+I EII +AK VDAIHPGYGFLSE +FA+A AG+ FIGP VL+ LGDKV
Sbjct: 63 AYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVA 122
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR+AA+KA VP+IPG+ P+ D+++ EF +E+ +P++LKA+ GGGGRGMR+V +++ +E
Sbjct: 123 ARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELE 182
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F+RA+ EA A+FG D++ +EKY++ PRHIEVQILGDK+G+VVHLYERDCS+QRR+QKV
Sbjct: 183 EAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
++IAPA +S +R+ I E +V+LA+++GY NAGTVEFL+D D NFYFIEVNPR+QVEHT
Sbjct: 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHT 302
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLC---QEKITPQGCAIQCHLRTEDPKRNFQPST 411
++EE+TGID+VQSQI IA+G +L +L + QE I +G AIQC + TEDP NF P T
Sbjct: 303 VTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDT 362
Query: 412 GRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQ 471
GR+ + P G+R+D + G +I+P YDSLL K+ T++ + +MRRAL E +
Sbjct: 363 GRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFR 422
Query: 472 VSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRD--MKILRFIGET 529
+ GV TN+PFL NV F +G+ T+FID+ P+L + + RD K+L +I +
Sbjct: 423 IRGVKTNIPFLENVLKHPDFRAGDY-TTSFIDETPELFD---FPKRRDRGTKLLTYIADV 478
Query: 530 LVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQ 589
VNG P PV DP + K + P
Sbjct: 479 TVNGF--PGVKKKPPVFPDPRLP-----------------------------KVDLSAPP 507
Query: 590 ANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEF 649
G +++L +G F +R K V
Sbjct: 508 PAGTKQILDELGPEGFADWLRDQKRV---------------------------------- 533
Query: 650 VNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSH 709
LLTDTTFRDAHQSLLATRVRT DL +++P A NL+SLEMWGGA
Sbjct: 534 ----------LLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFD 583
Query: 710 TCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDI 769
+FLKE PWERLAELRE PN+ FQM+LRG++ VGY+NY V AF R A+ AGID+
Sbjct: 584 VAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDV 643
Query: 770 FRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829
FR+FD LN V N+ +DAV++ TG I EA ICY GD+ +P + KY L+YY DLAK+L
Sbjct: 644 FRIFDSLNWVENMRVAIDAVRE-TGK--IAEAAICYTGDILDPARAKYDLDYYVDLAKEL 700
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889
++GA +L +KDMAGLLKP AA L+ + +E+ ++ IH+HTHD +G G+AT LA +AG
Sbjct: 701 EKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAG 759
Query: 890 ADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHN 949
DIVDVA SMSG+ SQP++ +IV+ LE T+
Sbjct: 760 VDIVDVAVASMSGLTSQPSLNSIVAALEGTE----------------------------- 790
Query: 950 LLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMS 1009
G+DL + S YW VR YAPFE + LK+ ++E YL+E+PGGQY+NLK + +
Sbjct: 791 --RDTGLDLDAIRKLSPYWEAVRPYYAPFE-SGLKSPTTEVYLHEMPGGQYSNLKQQARA 847
Query: 1010 FGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIF 1067
GL FE+VK Y N + GDI+K TPSSKVV D+A+FM Q L+ DV E + + F
Sbjct: 848 LGLGDRFEEVKEMYAAVNRMFGDIVKVTPSSKVVGDMALFMVQNGLTPEDVYEPGEDLDF 907
Query: 1068 PKSVTEFFQGSIGEPYQGFPKKLQEKVL-----------DSLKDHALE--RKAEFDPIMA 1114
P SV F +G +G+P GFP+ LQ+KVL + L+ E R + +
Sbjct: 908 PDSVVSFLKGELGQPPGGFPEPLQKKVLKGEEPITVRPGELLEPVDFEAERAELEEKLGR 967
Query: 1115 CDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAE 1164
D ++ L++PK + ++K R+E+G V LPT FF+ L E
Sbjct: 968 EVTDRD---VLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEE 1014
|
Length = 1146 |
| >gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 632 bits (1633), Expect = 0.0
Identities = 264/616 (42%), Positives = 350/616 (56%), Gaps = 89/616 (14%)
Query: 645 GAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWG 704
G F + +R K +LLTDTTFRDAHQSLLATRVRT DL +++P A NL+SLEMWG
Sbjct: 519 GPEGFADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWG 578
Query: 705 GAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQ 764
GA +FLKE PWERLAELRE PN+ FQM+LRG++ VGY+NY V AF R A+
Sbjct: 579 GATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAA 638
Query: 765 AGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824
AGID+FR+FD LN V N+ +DAV++ TG I EA ICY GD+ +P + KY L+YY D
Sbjct: 639 AGIDVFRIFDSLNWVENMRVAIDAVRE-TGK--IAEAAICYTGDILDPARAKYDLDYYVD 695
Query: 825 LAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884
LAK+L ++GA +L +KDMAGLLKP AA L+ + +E+ ++ IH+HTHD +G G+AT LA
Sbjct: 696 LAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLA 754
Query: 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELY 944
+AG DIVDVA SMSG+ SQP++ +IV+ LE T+
Sbjct: 755 AAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTE------------------------ 790
Query: 945 APAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLK 1004
G+DL + S YW VR YAPFE + LK+ ++E YL+E+PGGQY+NLK
Sbjct: 791 -------RDTGLDLDAIRKLSPYWEAVRPYYAPFE-SGLKSPTTEVYLHEMPGGQYSNLK 842
Query: 1005 FRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENA 1062
+ + GL FE+VK Y N + GDI+K TPSSKVV D+A+FM Q L+ DV E
Sbjct: 843 QQARALGLGDRFEEVKEMYAAVNRMFGDIVKVTPSSKVVGDMALFMVQNGLTPEDVYEPG 902
Query: 1063 DKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHA--LERKAEFDPIMACDYRED 1120
+ + FP SV F +G +G+P GFP+ LQ+KV LK R E
Sbjct: 903 EDLDFPDSVVSFLKGELGQPPGGFPEPLQKKV---LKGEEPITVRPGELLE--------- 950
Query: 1121 EPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVK 1180
PVD F A + E R+
Sbjct: 951 -------------------------PVD-------FEAERAELEEKLGREVTDRD----V 974
Query: 1181 MNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISE 1240
++ L++PK + ++K R+E+G V LPT F G GEE E + G T + +I E
Sbjct: 975 LSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEEIEVEIEPGKTLIIKLEAIGE 1034
Query: 1241 HLNDHGERTVFFLYNG 1256
++ G RTV+F NG
Sbjct: 1035 -PDEDGMRTVYFELNG 1049
|
Length = 1146 |
| >gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 1249 bits (3234), Expect = 0.0
Identities = 508/1122 (45%), Positives = 690/1122 (61%), Gaps = 127/1122 (11%)
Query: 54 PKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPV 113
+ ++K+L+ANR E+AIRV RA NE+GIK+V IYSE+D+ S HR K D+++L+G+G PV
Sbjct: 4 GEKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPV 63
Query: 114 AAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKV 173
AYL+I EII IAK + DAIHPGYGFLSE +FA+A AG+ FIGP P VL LGDKV
Sbjct: 64 EAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKV 123
Query: 174 LARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAI 233
AR+AA+KA VP+IPGT P+ +++ EF +E +PV++KAA GGGGRGMR+V ++ +
Sbjct: 124 KARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADL 183
Query: 234 EENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293
E F+RA+SEA A+FG D++ VEK ++ P+HIEVQILGD +G+VVHL+ERDCS+QRR+QK
Sbjct: 184 AEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQK 243
Query: 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEH 353
V+++APA +S +RD I + +V+LA+++GY NAGTVEFL+D+D FYFIEVNPR+QVEH
Sbjct: 244 VVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEH 303
Query: 354 TLSEEITGIDVVQSQIKIAQGKSLT--ELGLCQEK-ITPQGCAIQCHLRTEDPKRNFQPS 410
T++EEITGID+V++QI IA G +L ELGL Q+K I G AIQC + TEDP+ F P
Sbjct: 304 TITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPD 363
Query: 411 TGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEET 470
TGR+ + G+R+D Y G I+P YDSLL K+ +T++ + KM RAL E
Sbjct: 364 TGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREF 423
Query: 471 QVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETL 530
++ GV TN+PFL V + F SG T+FID P+L + Q R K+L ++ +
Sbjct: 424 RIRGVKTNIPFLEAVLNHPDFRSGRY-TTSFIDTTPELFQFPKSQD-RGTKLLTYLADVT 481
Query: 531 VNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQA 590
VNG L KP D + + KP
Sbjct: 482 VNG-FPGLKSRPKPAYDDAKLP-----------------------------VINVSKPPP 511
Query: 591 NGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFV 650
G +++L +G F VR+ K V
Sbjct: 512 RGTKQILDELGPEGFARWVREQKAV----------------------------------- 536
Query: 651 NSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHT 710
LLTDTTFRDAHQSLLATRVRT+DL +++P A L+SLEMWGGA
Sbjct: 537 ---------LLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDV 587
Query: 711 CLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIF 770
++FLKE PWERL LR+ +PN+ FQM+LRG + VGY NY + F + A+++GID+F
Sbjct: 588 AMRFLKEDPWERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVF 647
Query: 771 RVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830
R+FD LN V + +DAV++ G + EATICY GD+ +P +KKY+L+YY LAK+L
Sbjct: 648 RIFDSLNWVEQMRVAIDAVRE-AGK--VAEATICYTGDILDPGRKKYTLDYYVKLAKELE 704
Query: 831 ESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGA 890
++GA +L +KDMAGLLKP AA LI + RE ++ IH+HTHD +G GVAT LA V+AG
Sbjct: 705 KAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVEAGV 763
Query: 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950
DIVDVA SMSG+ SQP++ +IV+ L T++
Sbjct: 764 DIVDVAMASMSGLTSQPSLNSIVAALAGTER----------------------------- 794
Query: 951 LWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF 1010
G+D+ V + S YW VR+LYAPFE + LK ++E YL+E+PGGQ TNLK + S
Sbjct: 795 --DTGLDIEAVRELSFYWEAVRKLYAPFE-SGLKGPATEVYLHEMPGGQLTNLKQQARSL 851
Query: 1011 GLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFP 1068
GL +E+VK AYR N + GDI+K TPSSKVV DLA+FM Q L+ DV +A+ + FP
Sbjct: 852 GLGDRWEEVKEAYREVNRMFGDIVKVTPSSKVVGDLALFMVQNDLTEEDVENDANDLDFP 911
Query: 1069 KSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDH-----ALERKAEFDPIMA-----CDYR 1118
SV FF+G +G+P GFP+ LQ+KVL + L A+F+ I
Sbjct: 912 DSVVSFFRGELGQPPGGFPEPLQKKVLKGREPLTDRPGELLEPADFEAIRKELEEKLGRE 971
Query: 1119 EDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALE 1160
+ + L++PK + + K R+ +G V LPT FF+ L
Sbjct: 972 VSDQDVASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLR 1013
|
Length = 1149 |
| >gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 615 bits (1588), Expect = 0.0
Identities = 263/614 (42%), Positives = 351/614 (57%), Gaps = 85/614 (13%)
Query: 645 GAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWG 704
G F VR+ K +LLTDTTFRDAHQSLLATRVRT+DL +++P A L+SLEMWG
Sbjct: 522 GPEGFARWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWG 581
Query: 705 GAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQ 764
GA ++FLKE PWERL LR+ +PN+ FQM+LRG + VGY NY + F + A++
Sbjct: 582 GATFDVAMRFLKEDPWERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAK 641
Query: 765 AGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824
+GID+FR+FD LN V + +DAV++ G + EATICY GD+ +P +KKY+L+YY
Sbjct: 642 SGIDVFRIFDSLNWVEQMRVAIDAVRE-AGK--VAEATICYTGDILDPGRKKYTLDYYVK 698
Query: 825 LAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884
LAK+L ++GA +L +KDMAGLLKP AA LI + RE ++ IH+HTHD +G GVAT LA
Sbjct: 699 LAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATYLA 757
Query: 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELY 944
V+AG DIVDVA SMSG+ SQP++ +IV+ L T++ G+D+ V + S YW VR+LY
Sbjct: 758 AVEAGVDIVDVAMASMSGLTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRKLY 817
Query: 945 APAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLK 1004
AP FE + LK ++E YL+E+PGGQ TNLK
Sbjct: 818 AP-------------------------------FE-SGLKGPATEVYLHEMPGGQLTNLK 845
Query: 1005 FRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENA 1062
+ S GL +E+VK AYR N + GDI+K TPSSKVV DLA+FM Q L+ DV +A
Sbjct: 846 QQARSLGLGDRWEEVKEAYREVNRMFGDIVKVTPSSKVVGDLALFMVQNDLTEEDVENDA 905
Query: 1063 DKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEP 1122
+ + FP SV FF+G +G+P GFP+ LQ+KV LK P+ EP
Sbjct: 906 NDLDFPDSVVSFFRGELGQPPGGFPEPLQKKV---LKGRE--------PLTDRPGELLEP 954
Query: 1123 FKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMN 1182
F R E LE K + D +
Sbjct: 955 AD------------FEAIRKE---------------LEEKLGREV-SDQDV-------AS 979
Query: 1183 ELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHL 1242
L++PK + + K R+ +G V LPT F G GEE E + G T + +I E
Sbjct: 980 YLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEEIEVEIEKGKTLIIKLQAIGE-P 1038
Query: 1243 NDHGERTVFFLYNG 1256
++ G RTV+F NG
Sbjct: 1039 DEKGMRTVYFELNG 1052
|
Length = 1149 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 1220 bits (3157), Expect = 0.0
Identities = 536/1205 (44%), Positives = 714/1205 (59%), Gaps = 165/1205 (13%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG--MPPVAAY 116
KIL+ANR E+AIRV RA NE+GI++V IYSE+DK S HR K D+++ VG+G + P+ AY
Sbjct: 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+I EII +AK N VDAIHPGYGFLSE +FA A AG+ FIGP V+ LGDKV AR
Sbjct: 61 LSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAAR 120
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+ A+KA VP++PGT P +++V +F + +PVI+KA++GGGGRGMR+V ++ + +
Sbjct: 121 NLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADA 180
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+RA+SEA A+FG D++ VEK I+RPRHIEVQ+LGDK+G+VVHL+ERDCS+QRR+QKV++
Sbjct: 181 FQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+APA +S VRD I E +V+LAK++ Y NAGTVEFL+D D FYFIEVNPR+QVEHT++
Sbjct: 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVT 300
Query: 357 EEITGIDVVQSQIKIAQGKSL--TELGL-CQEKITPQGCAIQCHLRTEDPKRNFQPSTGR 413
EEITGID+VQ+QI IA G SL +LG+ QE I G AIQC + TEDP NFQP TGR
Sbjct: 301 EEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGR 360
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
++ + GIR+D Y G I+P YDSLL K+ +T + + KM RAL E ++
Sbjct: 361 IEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIR 420
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533
GV TN+PFL NV KFL G + +T FID P+L + Q R K+L ++ + VNG
Sbjct: 421 GVKTNIPFLENVLGHPKFLDG-SYDTRFIDTTPELFQFVKSQD-RATKLLTYLADVTVNG 478
Query: 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGY 593
+KP+ P + Y + P G
Sbjct: 479 -HPEAKDKLKPLENAPRVVVL----------------------------YADQNPVPRGT 509
Query: 594 RKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSV 653
+++L G F V
Sbjct: 510 KQILDEKGPEGF--------------------------------------------AEWV 525
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
R K +LLTDTTFRDAHQSLLATRVRT+DL K++P ++ NL+SLE WGGA ++
Sbjct: 526 RNQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMR 585
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FL E PWERL +LR+ +PNI FQM+LRG + VGY+NY V F + A+Q GIDIFRVF
Sbjct: 586 FLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVF 645
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
D LN V N+ GMDAV + G +VEA ICY GD+ +P + KY L YY +LA +L ++G
Sbjct: 646 DSLNWVENMRVGMDAVAE-AGK--VVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893
A +L +KDMAGLLKP AAKLLI + REK ++ IH HTHD +G VA+ LA V+AG D+V
Sbjct: 703 AHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVV 761
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953
DVA DSMSG+ SQP++G IV+ LE +++ G+++ +RE
Sbjct: 762 DVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNVAW----------IRE----------- 800
Query: 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
S+YW VR LYA FE DLK +SE YL+E+PGGQYTNL+F+ S GL
Sbjct: 801 ----------LSAYWEAVRNLYAAFES-DLKGPASEVYLHEMPGGQYTNLQFQARSLGLG 849
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
+ +VK+AYR AN + GDI+K TPSSKVV D+A+FM L+ DV+E A+++ FP SV
Sbjct: 850 DRWHEVKQAYREANQMFGDIVKVTPSSKVVGDMALFMVSNDLTVDDVVEPAEELSFPDSV 909
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131
EF +G IG+P+ GFP+ LQ+KVL K + + +P
Sbjct: 910 VEFLKGDIGQPHGGFPEPLQKKVLKGEKPITVRPGSLLEPA------------------- 950
Query: 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATK 1191
R + + K E + + D + ++PK
Sbjct: 951 ----DLDAIRKDL---------------QEKHERE-VSDFDV-------ASYAMYPKVFT 983
Query: 1192 KFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVF 1251
F K RD +GPV LPT F G GEE + + G T + ++ + GER VF
Sbjct: 984 DFAKARDTYGPVSVLPTPAFFYGLADGEEIEVDIEKGKTLIIKLQAVGA-TDSQGEREVF 1042
Query: 1252 FLYNG 1256
F NG
Sbjct: 1043 FELNG 1047
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Score = 565 bits (1460), Expect = 0.0
Identities = 200/450 (44%), Positives = 297/450 (66%), Gaps = 10/450 (2%)
Query: 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAA 115
+KILIANR E+A+R+ RAC E+GIK+V ++S D+ + H D+A +G P +
Sbjct: 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIG---PAPSK 57
Query: 116 --YLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKV 173
YLNIP II A+ DAIHPGYGFLSE DFA+ +G FIGP+ ++ +GDKV
Sbjct: 58 KSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKV 117
Query: 174 LARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAI 233
A+ KA VP++PG+ PV D ++ E+ +PVI+KA GGGGRGMR+V + +
Sbjct: 118 TAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAEL 177
Query: 234 EENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293
E+ F A++EA A+FG + +EKY++ PRHIE+Q+L D +G+ +HL ERDCS+QRR+QK
Sbjct: 178 EKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQK 237
Query: 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEH 353
V++ AP+ ++ +R I E +V+ AK++GY AGT+EFL +K+ FYFIE+N R+QVEH
Sbjct: 238 VLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEH 297
Query: 354 TLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR 413
++E ITG+D+V+ QI+IA G+ L + QE I +G AI+C + EDP +NF PS G+
Sbjct: 298 PVTEMITGVDLVKEQIRIAAGE---PLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGK 354
Query: 414 LDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473
+ + P G+RVDS+ Y G I P YDS++ K+IVH T + + +M+RAL E +
Sbjct: 355 ITRYHPPGGPGVRVDSAV-YTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVID 413
Query: 474 GVTTNLPFLLNVFDDKKFLSGEALETNFID 503
G+ T +P L + +D F +G+ ++++
Sbjct: 414 GIKTTIPLHLRLLNDPNFQAGDY-NIHYLE 442
|
Length = 451 |
| >gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 557 bits (1437), Expect = 0.0
Identities = 211/449 (46%), Positives = 299/449 (66%), Gaps = 6/449 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
KILIANR E+A RV R ++GI++V +YS+ D + H D+A +G P +Y
Sbjct: 2 FSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIG-PAPAAESY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L+I +II A+ AIHPGYGFLSE DFA+AV AGL FIGP+ ++ +GDK+ A+
Sbjct: 61 LDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAK 120
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
A +A VP +PG P+ D ++ +E+ +PV++KA+ GGGG+GMR+V + E
Sbjct: 121 KLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEA 180
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ A+ EA ASFG D + +EKY+D+PRHIE+Q+ D++G+VVHL ERDCS+QRR+QKVI+
Sbjct: 181 LESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
APA ++ R+A+ E +V AK++GY AGTVEF++D D NFYF+E+N RLQVEH ++
Sbjct: 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVT 300
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E ITGID+V+ QI++A G+ +L Q+ I G AI+ + EDP R F PSTGRL
Sbjct: 301 ELITGIDLVEWQIRVASGE---KLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTR 357
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ PA G+RVDS G +ISP YD ++AK+IVH A + + +++RRAL E +V G+
Sbjct: 358 YRPPAGPGVRVDSGV-REGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGIA 416
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDN 505
TN+PFL + D +F G L+T FI
Sbjct: 417 TNIPFLRALMADPRFRGG-DLDTGFIARE 444
|
Length = 645 |
| >gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 526 bits (1356), Expect = e-173
Identities = 215/454 (47%), Positives = 315/454 (69%), Gaps = 7/454 (1%)
Query: 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYL 117
+KILIANR E+AIRV RAC E+GIK+V +YSE DK + D+A+ +G PP +YL
Sbjct: 3 KKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPA-PPSKSYL 61
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
NI II +AK DAIHPGYGFL+E +FAKA AG+ FIGP+ +V++ +G K+ A+
Sbjct: 62 NIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKK 121
Query: 178 AALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENF 237
KA VP++PGT E + D+++ KE +E+ +PVI+KA+ GGGG GMR+V +++ +E+
Sbjct: 122 LMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAI 181
Query: 238 KRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297
+ QS A ++FG + +EKY+++PRHIE+QIL DK+G+V+HL +R+CS+QRR+QK+I+
Sbjct: 182 ESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIEE 241
Query: 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSE 357
AP+ M+ +R+ + E +V+ AK++ Y NAGTVEFL NFYF+E+N RLQVEH ++E
Sbjct: 242 APSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSN-GNFYFLEMNTRLQVEHPITE 300
Query: 358 EITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVF 417
+TGID+V+ QIKIA G+ EL QE IT +G AI+C + EDP +F PS G++ +
Sbjct: 301 MVTGIDIVKEQIKIAAGE---ELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRY 357
Query: 418 TDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTT 477
P G+RVD S + G +I P YDS+++K+IV T + + +MRRAL E + GV T
Sbjct: 358 RSPGGPGVRVD-SGVHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVGVKT 416
Query: 478 NLPFLLNVFDDKKFLSGEALETNFIDDNPQLLER 511
N+PF V +++ F+ G L T+FI++ +LE
Sbjct: 417 NIPFHKAVMENENFVRGN-LHTHFIEEETTILEE 449
|
Length = 499 |
| >gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 519 bits (1340), Expect = e-171
Identities = 216/447 (48%), Positives = 304/447 (68%), Gaps = 6/447 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+KILIANR E+A+R+ RAC E+GI++V +YSE D + H D+A +G P +Y
Sbjct: 2 FKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPA-PSADSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNI II A+ DAIHPGYGFLSE FA+A AGL FIGP+ ++ +GDK+ AR
Sbjct: 61 LNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITAR 120
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
KA VP++PG+ V D ++ +E+ +PVI+KAA GGGGRGMR+V N++ +E
Sbjct: 121 RLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAA 180
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+ A+ EA A+FG + +EK+I+ PRHIEVQ+LGD +G+V+HL ERDCS+QRR+QKVI+
Sbjct: 181 FEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
AP+ ++ +R+ I E +VR AK +GY AGTVEFL D + FYFIE+N RLQVEH ++
Sbjct: 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVT 300
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E +TGID+V+ QI+IA G+ L+ L QE I +G AI+C + EDP NF PS G++
Sbjct: 301 EMVTGIDLVKEQIRIAAGEPLS---LKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITR 357
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ P G+RVDS Y G ++ P YDS++ K+IVH T + +MRRAL+E + G+
Sbjct: 358 YAPPGGPGVRVDSGV-YDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDGIK 416
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFID 503
TN+P L + D FL+G+ L+T+F++
Sbjct: 417 TNIPLLQEILRDPDFLAGD-LDTHFLE 442
|
Length = 449 |
| >gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Score = 511 bits (1318), Expect = e-168
Identities = 193/447 (43%), Positives = 292/447 (65%), Gaps = 9/447 (2%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA-AYL 117
K+LIANR E+A+R+ R C ++GI++V IYSE D+ + H D+A+L+G P V +YL
Sbjct: 4 KVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGG--PRVQESYL 61
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
N+ +II IAK +AIHPGYG LSE FA+ G+ FIGP+ +++ +G K+ AR
Sbjct: 62 NLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARR 121
Query: 178 AALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENF 237
A A VP++PG T + D ++ ++ +PV+LKA+ GGGG GM++V + + + F
Sbjct: 122 AMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAF 181
Query: 238 KRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297
+ + A FG +M +EKYI+ PRHIE+Q+L D +G+ V+L+ER+CS+QRR+QKVI+
Sbjct: 182 ESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIEE 241
Query: 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSE 357
AP+ + R A+ E +V+ AK++GY+NAGT+EFL+D+ NFYF+E+N RLQVEH ++E
Sbjct: 242 APSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVTE 301
Query: 358 EITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVF 417
EITGID+V+ Q++IA G+ L+ Q+ I G AI+ + EDPK F PS G++
Sbjct: 302 EITGIDLVEQQLRIAAGEKLS---FTQDDIKRSGHAIEVRIYAEDPKT-FFPSPGKITDL 357
Query: 418 TDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTT 477
T P G+R D + G+ ++P YD ++AK+I H T + + ++ ALEE +V G+ T
Sbjct: 358 TLPGGEGVRHDHAVE-NGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEGIKT 416
Query: 478 NLPFLLNVFDDKKFLSGEALETNFIDD 504
N+P LL V +D F +G T F+
Sbjct: 417 NIPLLLQVLEDPVFKAGGY-TTGFLTK 442
|
Length = 450 |
| >gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 502 bits (1295), Expect = e-165
Identities = 207/452 (45%), Positives = 304/452 (67%), Gaps = 7/452 (1%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLN 118
KILIANR E+A+R+ RAC EMGI+SV IYSE D+ + H + D+A+ +G P+A YLN
Sbjct: 4 KILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGAD--PLAGYLN 61
Query: 119 IPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDA 178
++ +A DA+HPGYGFLSE + A+ G++FIGP+ V++ +GDK AR A
Sbjct: 62 PRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRA 121
Query: 179 ALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFK 238
+KA VP+ PG+ + D+D+ + + +PV+LKA GGGGRG+R +++ +E+NF
Sbjct: 122 MIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFP 181
Query: 239 RAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIA 298
R SEA +FG ++ +EK I P+HIEVQIL D +G+VVHL+ERDCS+QRR QK+I+IA
Sbjct: 182 RVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIEIA 241
Query: 299 PAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEE 358
P+ ++ R I + +VR AK++GY NAGTVEFLLD D YF+E+N R+QVEHT++EE
Sbjct: 242 PSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTITEE 301
Query: 359 ITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFT 418
ITGID+V+ QI+IA G L+ QE I +G A+Q + EDPK +F PS G++ +
Sbjct: 302 ITGIDIVREQIRIASGLPLS---YKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYY 358
Query: 419 DPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTN 478
P G+R D++ Y G I P YDS+ AK+IV T++ + ++ RRAL++ +V GV T
Sbjct: 359 APGGPGVRTDTAI-YTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTT 417
Query: 479 LPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
+P+ + + +F SG+ T+F++ +P+L
Sbjct: 418 IPYYQEILRNPEFRSGQ-FNTSFVESHPELTN 448
|
Length = 472 |
| >gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Score = 497 bits (1281), Expect = e-163
Identities = 191/447 (42%), Positives = 290/447 (64%), Gaps = 6/447 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KILIANR E+A+R+ RAC E+GIK+V ++S D+ + H D+A +G P +Y
Sbjct: 2 LDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPA-PSAKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ DAIHPGYGFLSE +FA+ +G FIGP+ ++ +GDKV A
Sbjct: 61 LNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAI 120
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+ KA VP +PG+ V D ++ + +PVI+KA GGGGRGMR+V D + ++
Sbjct: 121 ETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKS 180
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
++EA A+FG D + +EKYI+ PRH+E+Q+L DKYG+ ++L ERDCS+QRR+QK+++
Sbjct: 181 ISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
AP+ ++ +R + + +V+ A S+GY AGTVEFLLDK+ FYF+E+N R+QVEH ++
Sbjct: 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVT 300
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E ITG+D+++ QI+IA G+ L L QE + +G AI+C + EDP + F PS GR+
Sbjct: 301 EMITGVDLIKEQIRIAAGE---PLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITR 357
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ P G+R DS Y G + P YDS++ K+I + T + + +M+RAL E + G+
Sbjct: 358 YLPPGGPGVRWDSHV-YSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIK 416
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFID 503
T +PF + +D+ F G ++++
Sbjct: 417 TTIPFHQRILEDENFQHGG-TNIHYLE 442
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 449 |
| >gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated | Back alignment and domain information |
|---|
Score = 484 bits (1247), Expect = e-158
Identities = 203/447 (45%), Positives = 297/447 (66%), Gaps = 6/447 (1%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLN 118
KILIANR E+A+R+ RAC EMGI++V +YSE DK + H D+A +G +YLN
Sbjct: 4 KILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSK-DSYLN 62
Query: 119 IPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDA 178
I II AIHPG+GFLSE FAK + FIGP ++ +G+K AR+
Sbjct: 63 IQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREI 122
Query: 179 ALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFK 238
+KA VP++PG+ + + ++ E E+ +PV++KA+ GGGGRG+R+V +++ + + F
Sbjct: 123 MIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFN 182
Query: 239 RAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIA 298
A+SEA A+FG D M +EK+I+ P+HIE QILGD YG+VVHL ERDCS+QRR QKV++ A
Sbjct: 183 TAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEA 242
Query: 299 PAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEE 358
P+ M+ +R + E +V+ AK++ Y NAGT+EFLLDKD NFYF+E+N R+QVEH ++E
Sbjct: 243 PSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEM 302
Query: 359 ITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFT 418
ITG+D+V+ QIKIA G+ +L + QE I G +I+C + EDPK F P G+++
Sbjct: 303 ITGVDLVKEQIKIAYGE---KLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELY 359
Query: 419 DPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTN 478
P +G+RVDS+ Y G I P YDS++ K+IV+ + + +KM+RAL E + GV TN
Sbjct: 360 IPGGLGVRVDSAV-YSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTN 418
Query: 479 LPFLLNVFDDKKFLSGEALETNFIDDN 505
+ F + +D++F+ G +T+FI+
Sbjct: 419 IDFQFIILEDEEFIKGT-YDTSFIEKK 444
|
Length = 447 |
| >gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Score = 464 bits (1195), Expect = e-150
Identities = 195/453 (43%), Positives = 280/453 (61%), Gaps = 12/453 (2%)
Query: 54 PKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPV 113
P + K+L+ANR E+A+R+ RA E+G+++V S+ D+ S D+A +G P
Sbjct: 2 PSRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIG---PSH 58
Query: 114 AA--YLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGD 171
AA YLN I+ A+ DAIHPGYGFLSE FA+AV AGL F+GP ++T+GD
Sbjct: 59 AAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGD 118
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKD 231
K AR A +A VP +PG+ V +D E + +P+++KAA GGGGRG+R+ +
Sbjct: 119 KARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAA 178
Query: 232 AIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY 291
+ AQ EA A+FG + +E++I R RHIEVQILGD VVHL+ER+CS+QRR
Sbjct: 179 QLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRR 237
Query: 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD-DNFYFIEVNPRLQ 350
QK+++ AP+ ++ + RDA+ ++VRLA+ +GY AGT+E+L D FYFIE+N R+Q
Sbjct: 238 QKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQ 297
Query: 351 VEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPS 410
VEH ++E ITGID+VQ ++IA G+ L Q I +G A++C + EDP R+F P+
Sbjct: 298 VEHPVTEAITGIDLVQEMLRIADGEP---LRFAQGDIALRGAALECRINAEDPLRDFFPN 354
Query: 411 TGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEET 470
GR+D P G+RVDS YPG ++ P YDSLLAK+IVH ++ + RAL E
Sbjct: 355 PGRIDALVWPQGPGVRVDSLL-YPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALREL 413
Query: 471 QVSGVTTNLPFLLNVFDDKKFLSGEALETNFID 503
++ G+ T P + D +G TNF++
Sbjct: 414 RIDGMKTTAPLHRALLADADVRAGR-FHTNFLE 445
|
Length = 467 |
| >gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Score = 459 bits (1182), Expect = e-148
Identities = 209/460 (45%), Positives = 305/460 (66%), Gaps = 10/460 (2%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+ KILIANR E+A+RV RAC ++ IKSV IY+E D+ H D+A+ +G P+ Y
Sbjct: 2 IHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTD--PIKGY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
L++ I+ IAK DAIHPGYGFLSE +FAKAV AG+ FIGP V++ +G+K +AR
Sbjct: 60 LDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIAR 119
Query: 177 DAALKADVPIIPGTTEPVTD--VDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
K +PI+PGT E + ++++K F ++ +PVILKA+ GGGGRG+R+V ++ +E
Sbjct: 120 YLMKKNGIPIVPGT-EKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLE 178
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
F+ + EALA F D++ +EKY+ PRHIE QILGD YG+++HL ERDCS+QRR+QKV
Sbjct: 179 NAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKV 238
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
I+IAP +S ++R + T+V AK++GY+NAGT+EFLLD + FYF+E+N R+QVEH
Sbjct: 239 IEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHG 298
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
++EEITGID++ QI+IA G+ L L Q I P+G AI+ + E+ +NF PS G++
Sbjct: 299 VTEEITGIDLIVRQIRIAAGEILD---LEQSDIKPRGFAIEARITAENVWKNFIPSPGKI 355
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+ +RVD S Y I P YDS+LAK+IV +Y + K+ RAL+E + G
Sbjct: 356 TEYYPALGPSVRVD-SHIYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDG 414
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSY 514
+ T +PFL+ + ++F G +T++I+ + Q L +
Sbjct: 415 IRTTIPFLIAITKTREFRRG-YFDTSYIETHMQELLEKTE 453
|
Length = 478 |
| >gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated | Back alignment and domain information |
|---|
Score = 453 bits (1168), Expect = e-146
Identities = 193/451 (42%), Positives = 297/451 (65%), Gaps = 8/451 (1%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K +++ILIANR E+A+R R EMG +++ IYS DK + + D +G G
Sbjct: 2 KEIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIG-GAKSSE 60
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
+YLNIP II A+ DAI PGYGFLSE ++F + ++FIGP+ V+ + DK
Sbjct: 61 SYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSK 120
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
A++ +A VP+IPG+ + ++ K+ E+ +PVILKAA GGGGRGMR+V ++ +E
Sbjct: 121 AKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLE 180
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
+ A+SEAL++FG M +EK+I+ PRHIEVQILGDK+G+V+H+ ERDCS+QRR+QK+
Sbjct: 181 NLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKL 240
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
I+ +PA + R+ + ET+++ AK++GY AGT EFLLD + +FYF+E+N RLQVEHT
Sbjct: 241 IEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHT 300
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL 414
+SE ++G+D+++ IKIA+G+ L QE I +G AI+C + EDPK+ F PS G++
Sbjct: 301 VSEMVSGLDLIEWMIKIAEGEELPS----QESIKLKGHAIECRITAEDPKK-FYPSPGKI 355
Query: 415 DVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
+ P +R+DS Y G + P YDS++ K+IV + KM+RAL+E +V G
Sbjct: 356 TKWIAPGGRNVRMDSHA-YAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEG 414
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505
+ T +PF L + ++ F++ + +T +++++
Sbjct: 415 IKTTIPFHLEMMENADFINNK-YDTKYLEEH 444
|
Length = 445 |
| >gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase | Back alignment and domain information |
|---|
Score = 446 bits (1148), Expect = e-135
Identities = 186/450 (41%), Positives = 276/450 (61%), Gaps = 12/450 (2%)
Query: 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYL 117
+ +LIANR E+A+R+ R MGI+SV +YS+ D S H D+A +G G P +YL
Sbjct: 2 DTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLG-GAPAAESYL 60
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
+I +I+ AK AIHPGYGFLSE FA+A AG+ F+GP P ++ G K AR+
Sbjct: 61 DIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARE 120
Query: 178 AALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENF 237
A A VP++PGT ++ +D+ E E+ +PV+LK+ GGGG GM+ + + E F
Sbjct: 121 LAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAF 179
Query: 238 KRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297
+ + + FG + +E++++ RH+EVQI GD G VV L ERDCS+QRR QKV++
Sbjct: 180 ETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE 239
Query: 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQVEHTLS 356
PA ++ R A+ + RL +++ Y +AGTVEF+ D D FYF+EVN RLQVEH ++
Sbjct: 240 TPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVT 299
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRL-D 415
E +TG+D+V+ I+IA G+ L +TP+G AI+ + E+P +NFQPS G L D
Sbjct: 300 EMVTGLDLVEWMIRIAAGELPDFASLNIS-LTPRGAAIEARVYAENPAKNFQPSPGLLTD 358
Query: 416 V-FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474
V F D +RVD+ G ++SP+YD +LAKIIVH + + + K+ +AL ET+V G
Sbjct: 359 VQFPD----DVRVDTWVE-TGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG 413
Query: 475 VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
+ TNL +L ++ + F S + T ++
Sbjct: 414 IETNLDYLRSILSSETFRSA-QVSTRTLNS 442
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201 |
| >gnl|CDD|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Score = 392 bits (1010), Expect = e-126
Identities = 133/286 (46%), Positives = 181/286 (63%), Gaps = 12/286 (4%)
Query: 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPW 720
+TDTT RDAHQSLLATR+RT D+ ++ + +SLE+WGGA C++FL E PW
Sbjct: 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPW 58
Query: 721 ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP 780
ERL ELR+ +PN P QM+LRG +LVGY +Y V F A++ GIDIFR+FD LN V
Sbjct: 59 ERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVR 118
Query: 781 NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLK 840
NL + AV++ G VE ICY G ++L YY LAK+L + GA +C+K
Sbjct: 119 NLEVAIKAVKK-AGK--HVEGAICYTGS------PVHTLEYYVKLAKELEDMGADSICIK 169
Query: 841 DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900
DMAGLL P AA L+ + +++ + IH+HTHD +G VAT LA +AG DIVD A +
Sbjct: 170 DMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL 228
Query: 901 SGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946
SG SQP+ ++V+ L T + G+DL + + S Y+ +VR+ YAP
Sbjct: 229 SGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVRKKYAP 274
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex. In addition to the catalytic domain, transcarboxylase 5S has several other domains including a carbamoyl-phosphate synthase domain, a biotin carboxylase domain, a carboxyltransferase domain, and an ATP-grasp domain. Pyruvate carboxylase, like TC, is a biotin-dependent enzyme that catalyzes the carboxylation of pyruvate to produce oxaloacetate. In mammals, PC has critical roles in gluconeogenesis, lipogenesis, glyceroneogenesis, and insulin secretion. Inherited PC deficiencies are linked to serious diseases in humans such as lactic acidemia, hypoglycemia, psychomotor retardation, and death. PC is a single-chain enzyme and is active only in its homotetrameric form. PC has three domains, an N-terminal biotin carboxylase domain, a carboxyltransferase domain (this alignment model), and a C-terminal biotin-carboxyl carrier protein domain. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 275 |
| >gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 8e-86
Identities = 118/291 (40%), Positives = 179/291 (61%), Gaps = 16/291 (5%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNL--YSLEMWGGAVSHTCLKF 714
K + +TDTT RDAHQSLLATR+RT D+ + A + + + +SLE+WGGA C+++
Sbjct: 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPI----AEKLDKVGFWSLEVWGGATFDVCIRY 57
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L E PWERL +L++ +PN P QM+LRG +LVGY +Y V F A++ GIDIFR+FD
Sbjct: 58 LNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFD 117
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN V N+ + A ++ G V+ TI Y T+P +++ Y +LAK+L E G
Sbjct: 118 ALNDVRNMEVAIKAAKKA-GA--HVQGTISYT---TSP---VHTIEKYVELAKELEEMGC 168
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
+C+KDMAGLL P AA L+ + +E+ ++ + +H+H +G T L V+AG DI+D
Sbjct: 169 DSICIKDMAGLLTPYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIID 227
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYA 945
A ++ SQP ++V+ L+ T G+DL + + + Y+R+VR+ Y
Sbjct: 228 TAISPLAFGTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYK 278
|
Length = 592 |
| >gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 5e-82
Identities = 98/211 (46%), Positives = 137/211 (64%), Gaps = 1/211 (0%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DKVL + A +A VP +PGT PV ++ E+ +PVI+KAAFGGGG GM + N+
Sbjct: 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE 60
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290
+ + E F A +EA A+FG +LVEK + P+HIE Q+L D +G+ + + R+CS QRR
Sbjct: 61 EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR 120
Query: 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRL 349
QK I++AP+Q ++ R + E +V++A+ LGY AGTVEF LD +YFIE+N RL
Sbjct: 121 TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL 180
Query: 350 QVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
QVEH L+E+ TG D+ + KIA G L EL
Sbjct: 181 QVEHALAEKATGYDLAKEAAKIALGYPLPEL 211
|
Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold. Length = 211 |
| >gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 276 bits (709), Expect = 9e-82
Identities = 165/508 (32%), Positives = 243/508 (47%), Gaps = 83/508 (16%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYD-------LKKVSPFVANRFNNLYSLEMWGGAVSH 709
K I +TDT RD HQSLLATR+RT D L KV +SLE+WGGA
Sbjct: 4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKV---------GYWSLEVWGGATFD 54
Query: 710 TCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDI 769
C++FL E PWERL EL++ +PN QM+LRG +LVGY +Y+ V F A++ GID+
Sbjct: 55 ACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDV 114
Query: 770 FRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829
FR+FD LN V NL + A ++ V+ TI Y T+P ++L YY +LAK+L
Sbjct: 115 FRIFDALNDVRNLKTAIKAAKKHGA---HVQGTISYT---TSP---VHTLEYYVELAKEL 165
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889
+E G +C+KDMAGLL P A L+ + +++ P + + +HTH +G T L V+AG
Sbjct: 166 LEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAG 224
Query: 890 ADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHN 949
D +D A +SG SQPA T+V+ L T G+DL + E+
Sbjct: 225 VDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLE----------LLEEIAE---- 270
Query: 950 LLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMS 1009
Y+R+VR+ Y K +Y++PGG +NL+ +
Sbjct: 271 -----------------YFREVRKKYKGLLEPQAKGVDPRILIYQVPGGMLSNLESQLKE 313
Query: 1010 FG-LD-FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF--MTQEKLSYRDVMENADKI 1065
LD E+V LG TP+S++V A+ +T E Y K+
Sbjct: 314 QNALDKLEEVLEEVPRVREDLGYPPLVTPTSQIVGTQAVLNVLTGE--RY--------KV 363
Query: 1066 IFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKM 1125
I K ++ +G G +L EK+L + R A+ D + E ++
Sbjct: 364 I-TKETKDYVKGLYGRTPAPINAELIEKILGDEEKPITCRPADLLEPEL-DKLKKELEEL 421
Query: 1126 NKL----------IFPKATKKFMKFRDE 1143
+FP+ KKF++ R++
Sbjct: 422 AIEEEEEDVLTYALFPQVAKKFLEGREK 449
|
Length = 472 |
| >gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 1e-77
Identities = 160/512 (31%), Positives = 244/512 (47%), Gaps = 81/512 (15%)
Query: 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFN--NLYSLEMWGGAVSHTCLKFLKEC 718
+TD RDAHQSL ATR+RT D+ + A + + +SLE+WGGA C++FL E
Sbjct: 1 ITDVVLRDAHQSLFATRMRTEDMLPI----AEKLDDVGYWSLEVWGGATFDACIRFLNED 56
Query: 719 PWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNS 778
PWERL EL++ +PN P QM+LRG +L+GY +Y+ V F + A + G+D+FR+FD LN
Sbjct: 57 PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALND 116
Query: 779 VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838
NL + A ++ G + TI Y T+P ++L Y DLA++L+E G +C
Sbjct: 117 PRNLQAAIQAAKK-HGA--HAQGTISYT---TSP---VHTLETYLDLAEELLEMGVDSIC 167
Query: 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898
+KDMAG+L P AA L+ + ++++ + +H+H+H G L ++AGAD +D A
Sbjct: 168 IKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAIS 226
Query: 899 SMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDL 958
SMSG S P T+V+ L T G+D+ + E+ A
Sbjct: 227 SMSGGTSHPPTETMVAALRGTGYDTGLDIE----------LLLEIAA------------- 263
Query: 959 HDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTN----LKFRTMSFGLD- 1013
Y+R+VR+ Y+ FE LK S + ++PGG +N LK + LD
Sbjct: 264 --------YFREVRKKYSQFE-GQLKGPDSRILVAQVPGGMLSNLESQLKEQNALDKLDE 314
Query: 1014 -FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVT 1072
E++ R LG TP+S++V A+ Y+ + K
Sbjct: 315 VLEEIPRVRED----LGYPPLVTPTSQIVGTQAVLNVLTGERYKTIT---------KETK 361
Query: 1073 EFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKA-----EFDPIMACDYRE-------D 1120
+ +G G +LQ K+L K R A E D + A + RE
Sbjct: 362 GYLKGEYGRTPAPINAELQRKILGDEKPIVDCRPADLLEPELDKLRA-EVREAGAEKNSI 420
Query: 1121 EPFKMNKLIFPKATKKFMKFRDEFGPVDKLPT 1152
E + +FP+ KF++ R + P
Sbjct: 421 EDV-LTYALFPQVGLKFLENRHNPAAFEPKPE 451
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582 |
| >gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 1e-68
Identities = 120/296 (40%), Positives = 173/296 (58%), Gaps = 26/296 (8%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYD-------LKKVSPFVANRFNNLYSLEMWGGAVSH 709
K + +TD RDAHQSL ATR+R D L KV +SLE WGGA
Sbjct: 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVG---------YWSLESWGGATFD 53
Query: 710 TCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDI 769
C++FL E PWERL EL++ +PN P QM+LRG +L+GY +Y+ V F A + G+D+
Sbjct: 54 ACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDV 113
Query: 770 FRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829
FRVFD +N NL + AV++V + + T+ Y T+P ++L + DLAKQL
Sbjct: 114 FRVFDAMNDPRNLETALKAVRKVGAHA---QGTLSYT---TSP---VHTLQTWVDLAKQL 164
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889
+ G LC+KDMAGLLKP AA L+ +++ ++ +H+H H G AT L ++AG
Sbjct: 165 EDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAG 223
Query: 890 ADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYA 945
D VD A SMS A T+V+ LE T++ G+D+ + + ++Y+R+VR+ YA
Sbjct: 224 IDGVDTAISSMSMTYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVRKKYA 279
|
Length = 593 |
| >gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 2e-67
Identities = 145/500 (29%), Positives = 247/500 (49%), Gaps = 76/500 (15%)
Query: 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNL--YSLEMWGGAVSHTCLKFLK 716
I +T+T RD QSL+ATR+ T ++ + + +N +SLEMWGGA CL+FL
Sbjct: 4 IKITETVLRDGQQSLIATRMTTEEMLPI----LEKLDNAGYHSLEMWGGATFDACLRFLN 59
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
E PWERL ++R+ + QM+LRG +L+GY NY+ V +F + + + GIDI R+FD L
Sbjct: 60 EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDAL 119
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
N V NL + A ++ G + + I Y T+P ++++Y+ LAK++ E GA
Sbjct: 120 NDVRNLETAVKATKKAGGHA---QVAISYT---TSP---VHTIDYFVKLAKEMQEMGADS 170
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896
+C+KDMAG+L P A L+ +E + + VHTH +G T L ++AGADI+D A
Sbjct: 171 ICIKDMAGILTPYVAYELVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229
Query: 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGI 956
+G SQPA ++V+ L++ G+DL ++ + + Y+ +R+ Y R
Sbjct: 230 ISPFAGGTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDHY--------REEG 281
Query: 957 DLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD--F 1014
L+ KV K + +Y++PGG +NL + G + +
Sbjct: 282 ILNP---------KV------------KDVEPKTLIYQVPGGMLSNLLSQLKEQGAEDKY 320
Query: 1015 EDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF--MTQEKLSYRDVMENADKIIFPKSVT 1072
E+V + LG TP S++V A+ ++ E+ K++ P +
Sbjct: 321 EEVLKEVPKVRADLGYPPLVTPLSQMVGTQALMNVISGERY----------KMV-PNEIK 369
Query: 1073 EFFQGSIGEPYQGFPKKLQEKVL-----------DSLKDHALERKAEFDPIMACDYREDE 1121
++ +G G P +++++K++ D ++ + + E +Y E E
Sbjct: 370 DYVRGLYGRPPAPIAEEIKKKIIGDEEVITCRPADLIEPQLEKLREEIA-----EYAESE 424
Query: 1122 PFKMNKLIFPKATKKFMKFR 1141
++ +FP+ K F+ R
Sbjct: 425 EDVLSYALFPQQAKDFLGRR 444
|
Length = 448 |
| >gnl|CDD|237593 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 3e-62
Identities = 152/508 (29%), Positives = 234/508 (46%), Gaps = 95/508 (18%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFN--NLYSLEMWGGAVSHTCLKF 714
++ DTT RD HQSL+ATR+RT D+ F+ YS+E+WGGA C++F
Sbjct: 1 MKVMFVDTTLRDGHQSLIATRMRTEDMLPA----LEAFDRMGFYSMEVWGGATFDVCVRF 56
Query: 715 LKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFD 774
L E PWERL E+R+ + N QM+LRG +LVGY +Y+ V F + ++ G+DI R+FD
Sbjct: 57 LNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFD 116
Query: 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834
LN + NL K ++ ++ V+ I Y +P ++L YY + A++LV+ G
Sbjct: 117 ALNDIRNLEKSIEVAKKH---GAHVQGAISYT---VSP---VHTLEYYLEFARELVDMGV 167
Query: 835 QVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894
+C+KDMAGLL P A L+ + ++K+ + + VH+H G LA V+AGAD+ D
Sbjct: 168 DSICIKDMAGLLTPKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGADMFD 226
Query: 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
A S SQP ++ K D + ++ L
Sbjct: 227 TAISPFSMGTSQPPFESMYYAFRENGKETDFD----------RKALKFL----------- 265
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTN----LKFRTMSF 1010
Y+ KVRE Y+ ++ +K+ S + +IPGG Y+N LK + M
Sbjct: 266 ----------VEYFTKVREKYSEYD-VGMKSPDSRILVSQIPGGMYSNLVKQLKEQKMLH 314
Query: 1011 GLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF--MTQEKLSYRDVMENADKII 1066
LD E+V R + LG TP+S++V A+ +T E+ Y+ V
Sbjct: 315 KLDKVLEEVPRVRKD----LGYPPLVTPTSQIVGVQAVLNVLTGER--YKRVT------- 361
Query: 1067 FPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMN 1126
+ +G G P ++L +K+L E+ + P D E E K
Sbjct: 362 --NETKNYVKGLYGRPPAPIDEELMKKILGD------EKPIDCRP---ADLLEPELEKAR 410
Query: 1127 K---------------LIFPKATKKFMK 1139
K +I + KKF+K
Sbjct: 411 KELGILAETDEDLLIYVILGEVGKKFLK 438
|
Length = 467 |
| >gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 5e-61
Identities = 155/511 (30%), Positives = 239/511 (46%), Gaps = 82/511 (16%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK 716
+ I +T+ RDAHQSL+ATR+ D+ + N +S+E WGGA C++FL
Sbjct: 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNA--GYWSVECWGGATFDACIRFLN 60
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
E PWERL R+L+PN QM+LRG +L+GY +Y V F +++ G+D+FRVFD L
Sbjct: 61 EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDAL 120
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
N NL M AV++V + + TICY +P +++ + + AK+L++ GA
Sbjct: 121 NDPRNLEHAMKAVKKVGKHA---QGTICYT---VSP---IHTVEGFVEQAKRLLDMGADS 171
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895
+C+KDMA LLKP A ++ +E + I++H H G + + + ++AG D+VD
Sbjct: 172 ICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231
Query: 896 AADSMS-GICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954
A SMS G P ++V LE T +D+ + K+R+
Sbjct: 232 AISSMSLGPGHNPTE-SLVEMLEGTGYTTKLDMDRLL-------KIRD------------ 271
Query: 955 GIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG--- 1011
+++KVR Y FE + +E + +IPGG +N++ + G
Sbjct: 272 ------------HFKKVRPKYKEFE-SKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGD 318
Query: 1012 -LD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF---------MTQEKLSYRDVM 1059
+D E+V R + A + TPSS++V A+F +T E + D+M
Sbjct: 319 RMDEVLEEVPRVRKDAGY----PPLVTPSSQIVGTQAVFNVLMGRYKVLTGE---FADLM 371
Query: 1060 EN-ADKIIFPKS--VTEFFQGSIG-EPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMAC 1115
+ ++ V E + EP P L E D L+ AL + C
Sbjct: 372 LGYYGETPGERNPEVVEQAKKQAKKEPITCRPADLLEPEWDKLRAEAL-------ALEGC 424
Query: 1116 DYREDEPFKMNKLIFPKATKKFMKFRDEFGP 1146
D DE L FP+ KF R E GP
Sbjct: 425 D-GSDEDVLTYAL-FPQVAPKFFATRAE-GP 452
|
Length = 499 |
| >gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 1e-60
Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 39/291 (13%)
Query: 662 TDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNL--YSLEMWGGAVSHTCLKFLKECP 719
TDTT RD QS AT T D ++ A + S+E+ GA E
Sbjct: 1 TDTTLRDGLQSEGATF-STEDKLEI----AEALDEAGVDSIEVGSGASPKAV--PQMEDD 53
Query: 720 WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV 779
WE L +R+L+PN+ Q ++R A +AG+D R+FD +
Sbjct: 54 WEVLRAIRKLVPNVKLQALVRNRE-------------KGIERALEAGVDEVRIFDSASET 100
Query: 780 PNLVKG-----------MDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828
+ +A++ VE ++ A K Y ++AK
Sbjct: 101 HSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG------CKTDPEYVLEVAKA 154
Query: 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA 888
L E+GA + LKD GL P L+ + RE P++ + +HTH+ G VA +LA ++A
Sbjct: 155 LEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEA 214
Query: 889 GADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRK 939
GAD VD + + + A +V+ LE GIDL + + S Y +
Sbjct: 215 GADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE 265
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 265 |
| >gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-54
Identities = 132/444 (29%), Positives = 212/444 (47%), Gaps = 59/444 (13%)
Query: 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNL--YSLEMWGGAVSHTCLK 713
+ +TD T RDAHQ L+ATR+RT D+ + N+ +++ +++E+WGGA CL+
Sbjct: 1 MSKTFITDVTLRDAHQCLIATRMRTEDMLPI----CNKMDDVGFWAMEVWGGATFDACLR 56
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FLKE PW RL +LR+ +PN M+LRG +L+GY NY+ V AF +LA G+D+FRVF
Sbjct: 57 FLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVF 116
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
D LN NL +DA++ + + ICY T+P ++L+ + +L K+L E G
Sbjct: 117 DALNDARNLKVAIDAIKSHKKHA---QGAICYT---TSP---VHTLDNFLELGKKLAEMG 167
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893
+ +KDMAGLL PT L ++ + +H+H+H +G V AG + +
Sbjct: 168 CDSIAIKDMAGLLTPTVTVELYAGLKQA-TGLPVHLHSHSTSGLASICHYEAVLAGCNHI 226
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953
D A S SG S P +V+ L +T +
Sbjct: 227 DTAISSFSGGASHPPTEALVAALTDTP-------------------------------YD 255
Query: 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNL--KFRTMSFG 1011
+DL+ + + Y++ VR+ Y+ FE ++ + LY++PGG +NL + + +
Sbjct: 256 TELDLNILLEIDDYFKAVRKKYSQFE-SEAQNIDPRVQLYQVPGGMISNLYNQLKEQNAL 314
Query: 1012 LDFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
+ V + LG TP+S+VV A+ Y+ + V
Sbjct: 315 DKMDAVHKEIPRVRKDLGYPPLVTPTSQVVGTQAVINVLTGERYKTIT---------NEV 365
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVL 1095
+ QG G P L++K +
Sbjct: 366 KLYCQGKYGTPPGKISSALRKKAI 389
|
Length = 596 |
| >gnl|CDD|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-53
Identities = 114/288 (39%), Positives = 166/288 (57%), Gaps = 12/288 (4%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK 716
+ + +T+T RD HQSL+ATR+ D+ V + YSLE WGGA C++FL
Sbjct: 11 QQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKI--GYYSLECWGGATFDACIRFLN 68
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
E PWERL L++ +PN QM+LRG +L+GY +Y+ V F L++Q GID+FR+FD L
Sbjct: 69 EDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDAL 128
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
N N+ + + AV++ T EA +C A T+P ++LNYY L K+LVE GA
Sbjct: 129 NDPRNIQQALRAVKK-----TGKEAQLCIAYT-TSP---VHTLNYYLSLVKELVEMGADS 179
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896
+C+KDMAG+L P AAK L+ + N+ + VHTH +G T LA V+AGAD +D A
Sbjct: 180 ICIKDMAGILTPKAAKELVSGIK-AMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTA 238
Query: 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELY 944
S SQPA ++ L+ +D + +++ R+ R+ Y
Sbjct: 239 LSPFSEGTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKY 286
|
Length = 468 |
| >gnl|CDD|217032 pfam02436, PYC_OADA, Conserved carboxylase domain | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-48
Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 991 YLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFM 1048
YL++IPGGQ +NLK + GL +E+V Y LGDI TPSS++V D A+F
Sbjct: 2 YLHQIPGGQLSNLKSQLKEQGLGDRWEEVLEEYPRVRKDLGDIPLVTPSSQIVGDQAVFN 61
Query: 1049 TQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVL-----------DS 1097
L + FPKSV ++ +G G+P GFP++LQ+KVL D
Sbjct: 62 VLNGL---TPVGEGRYKDFPKSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPADL 118
Query: 1098 LKDHALER-KAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFF 1156
L+ LE+ +AE + +++ ++ +FPK +KF++ R+E+G V LPT +FF
Sbjct: 119 LEPVDLEKLRAELEEKAGRKLSDED--VLSYALFPKVAEKFLEHREEYGDVSVLPTPVFF 176
Query: 1157 HALERKAEF 1165
+ +E E+
Sbjct: 177 YGMEVGEEY 185
|
This domain represents a conserved region in pyruvate carboxylase (PYC), oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 5s subunit. The domain is found adjacent to the HMGL-like domain (pfam00682) and often close to the biotin_lipoyl domain (pfam00364) of biotin requiring enzymes. Length = 198 |
| >gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain, N-terminal domain | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-41
Identities = 52/108 (48%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYL 117
+K+L+ANR E+A+R+ RA E+GI++V + S D S H D+A+ +G G P +YL
Sbjct: 2 KKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPG-PASESYL 60
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165
NI I+ IA+ DAIHPGYGFLSE +FA+A AG+ FIGP+P
Sbjct: 61 NIERILDIAEKEGADAIHPGYGFLSENAEFAEACEEAGITFIGPSPEA 108
|
Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. Length = 108 |
| >gnl|CDD|214878 smart00878, Biotin_carb_C, Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 6e-37
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454
+C + EDP F PS GR+ + P G+RVDS Y G ++ P YDS++AK+IV
Sbjct: 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGV-YEGYEVPPYYDSMIAKLIVWGE 59
Query: 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFID 503
+ + ++RRAL+E ++ GV TN+PFL + F +G+ ++T F++
Sbjct: 60 DREEAIARLRRALDEFRIRGVKTNIPFLRALLRHPDFRAGD-VDTGFLE 107
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. Length = 107 |
| >gnl|CDD|202395 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 8e-37
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454
+ + EDP F PS G++ + P G+RVDS Y G ++SP YDS++AK+IVH
Sbjct: 1 EARIYAEDPANGFLPSPGKITRYRFPGGPGVRVDSGV-YEGDEVSPYYDSMIAKLIVHGP 59
Query: 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFID 503
+ + ++RRAL ET++ GV TN+PFL + + F +GE ++T F++
Sbjct: 60 DREEAIARLRRALAETRIEGVKTNIPFLRAILEHPDFRAGE-VDTGFLE 107
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyzes the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. Length = 107 |
| >gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-34
Identities = 58/143 (40%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNK 1342
F G GEE E + G T + +I E ++ G RTV+F NGQ R + D++
Sbjct: 1003 PTFFYGLRPGEEIEVEIEPGKTLIIKLEAIGE-PDEDGMRTVYFELNGQPREVQVRDRSV 1061
Query: 1343 AKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASAD 1402
+ R KAD G +GAPMPG+++ V VK G +VK D L V+ MK ET I A D
Sbjct: 1062 KSTVAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVD 1121
Query: 1403 GVVKEIFVEVGGQVAQNDLVVVL 1425
G VK + V+ G QV DL+V L
Sbjct: 1122 GTVKRVLVKAGDQVEAGDLLVEL 1144
|
Length = 1146 |
| >gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 1e-33
Identities = 63/144 (43%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNK 1342
F G GEE E + G T + +I E ++ G RTV+F NGQ R + D++
Sbjct: 1006 PTFFYGLRPGEEIEVEIEKGKTLIIKLQAIGE-PDEKGMRTVYFELNGQPREIKVKDRSV 1064
Query: 1343 AKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASAD 1402
+ R KAD G IGAPMPG ++EVKVK G +VKK DVL V+ MK ET I A D
Sbjct: 1065 GSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFD 1124
Query: 1403 GVVKEIFVEVGGQVAQNDLVVVLD 1426
G VKE+ V+ G Q+ DL+VV++
Sbjct: 1125 GTVKEVLVKDGDQIDGGDLLVVVE 1148
|
Length = 1149 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 5e-32
Identities = 59/156 (37%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 1274 SDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1333
D + + + F G GEE + + G T + ++ + GER VFF NG
Sbjct: 989 RDTYGPVSVLPTPAFFYGLADGEEIEVDIEKGKTLIIKLQAVGA-TDSQGEREVFFELNG 1047
Query: 1334 QLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390
Q R + D++ + +R KAD +GAPMPG IIEVKV GQ V K D L+V+
Sbjct: 1048 QPRRIKVPDRSHKAEAAVRRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEA 1107
Query: 1391 MKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
MK ET I A DG +KE+ V+ G Q+ DL++VL+
Sbjct: 1108 MKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Score = 97.1 bits (243), Expect = 2e-24
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
E+ APMPG +++V VK G +V+ L V+ MK E + A GVVKEI V+ G QV
Sbjct: 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEA 60
Query: 1419 NDLVVVL 1425
L+VV+
Sbjct: 61 GQLLVVI 67
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67 |
| >gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 4e-19
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
DK L R+ A +P+ P V D + + +E+ FPV+LK G G G+ V
Sbjct: 2 FRDKALMRELLRAAGLPVPP--FFLVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVD 59
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP-RHIEVQILGDKYGDVVHL----YER 283
+ +E +E + LVE+YID H++ + G++V L Y
Sbjct: 60 SAAELEAALAALAAE---VEDTREYLVEEYIDGDEYHVDGLVDD---GELVFLGVSRYLG 113
Query: 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT-VEFLLDKDDNFYF 342
+ + +++ + +A+ E + R+ K+LG N +EF L D
Sbjct: 114 PPPP--DFSEGVELGSVSPGEDPLPEALRELAERVLKALGLRNGVFHLEFFLTPDGRPVL 171
Query: 343 IEVNPRL 349
+E+NPR
Sbjct: 172 LEINPRP 178
|
This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 183 |
| >gnl|CDD|201390 pfam00682, HMGL-like, HMGL-like | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 55/232 (23%), Positives = 88/232 (37%), Gaps = 36/232 (15%)
Query: 699 SLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758
+E+ +S T +E + + E++ Q +LR +
Sbjct: 29 EIEVGFPFMSPT--------DFESVRAIAEVLKKAKIQALLR-------PVEHDIDAAV- 72
Query: 759 CRLASQAGIDIFRVFDP---------LNSVPNLVKGM--DAVQQVTGGSTIVEATICYAG 807
A AG D VF LN V AV+ VE AG
Sbjct: 73 -EAAKGAGADRVHVFIATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVELGCEDAG 131
Query: 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILI 867
L + ++ + E+GA + + D G+L P A LI + +++ P ++I
Sbjct: 132 RT--------DLAFLIEVVEVAQEAGATRINIADTVGVLTPNEAADLISALKDRVPPVII 183
Query: 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT 919
VH H+ G VA +LA V+AGAD VD + + A+ +V+ LE
Sbjct: 184 EVHCHNDLGMAVANSLAAVEAGADRVDGTVNGLGERAGNAALEELVAALEVL 235
|
This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. Length = 236 |
| >gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-17
Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 1322 HGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKK 1381
G+R + +G + K++ + + + G + +PMPG +++VKVK G +VK
Sbjct: 487 EGKRPFYLRVDGMPEEVVVEPLKEIVVGGRPRASAPGAVTSPMPGTVVKVKVKEGDKVKA 546
Query: 1382 NDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
D ++V+ MK E I A DG VKEI V+ G +V D+++ +
Sbjct: 547 GDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEI 590
|
Length = 592 |
| >gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-17
Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 28/253 (11%)
Query: 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV 207
AKA+ AG+ +G +P + D+ + + +P T T V++ EF E+
Sbjct: 646 AKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKT--ATSVEEAVEFASEI 703
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEV 267
+PV+++ ++ GGR M +V N++ + + EA+ + +L++KY++ ++V
Sbjct: 704 GYPVLVRPSYVLGGRAMEIVYNEEELRRYLE----EAVEVSPEHPVLIDKYLEDAVEVDV 759
Query: 268 QILGDK-----YGDVVHLYER------DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSV 316
+ D G + H+ E D + + P Q +S + D I +
Sbjct: 760 DAVSDGEEVLIPGIMEHI-EEAGVHSGDSTC---------VLPPQTLSAEIVDRIKDIVR 809
Query: 317 RLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376
++AK L ++F + KD Y IEVNPR + TG+ +++ ++ GK
Sbjct: 810 KIAKELNVKGLMNIQFAV-KDGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKK 868
Query: 377 LTELGLCQEKITP 389
L ELG+ +EK
Sbjct: 869 LEELGVGKEKEPK 881
|
Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050 |
| >gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-17
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 1350 SKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409
+K + ++GE+ APMPG ++ V VK GQ+V D+L+V+ MK E + A DGVV ++
Sbjct: 568 AKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLA 627
Query: 1410 VEVGGQVAQNDLVVVLD 1426
V G QVA ++V +
Sbjct: 628 VAEGDQVAVGTVLVEFE 644
|
Length = 645 |
| >gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-17
Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 35/293 (11%)
Query: 119 IPEIIC-IAKNNNVDAIHPGYG---------FLSEREDFAKAVIGAGLEFIGPAPNVLKT 168
E + I + DAI P G L E+ K G+E +G P ++
Sbjct: 58 TKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKY----GVEVVGSDPEAIEI 113
Query: 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
DK L ++A + +P+ V++ E DE+ +PVI+K +FG GG G +
Sbjct: 114 AEDKKLFKEAMREIGIPVPS---RIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAY 170
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288
N EE + E L + +++L+E+ I + E +++ D + + C+M+
Sbjct: 171 N----EEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIV----VCNME 222
Query: 289 R------RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDN-FY 341
I +APAQ ++ + + ++++ + +G ++F +D Y
Sbjct: 223 NLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELY 282
Query: 342 FIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAI 394
IE+NPR+ L+ + TG + + K+A G +L E+ + IT + A
Sbjct: 283 VIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEI---RNDITGRTPAS 332
|
Length = 400 |
| >gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-16
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1359 EIGAPMPGNII-----EVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG 1413
EI +PM G + E VKVG +VK VL + MK E I A GVVKEI V+ G
Sbjct: 2 EIKSPMIGESVKEGTAEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEG 61
Query: 1414 GQVAQNDLVVVL 1425
V D + +
Sbjct: 62 DTVEVGDPLAKI 73
|
This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73 |
| >gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 6e-16
Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 35/248 (14%)
Query: 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV 207
AK + AGL +G +P+ + L D+ + +P +PG T TD ++ F +
Sbjct: 647 AKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLT--ATDEEEAFAFAKRI 704
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEV 267
+PV+++ ++ GG+GM +V ++ A+E S +L++++ID + EV
Sbjct: 705 GYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENAS------QLYPILIDQFID-GKEYEV 757
Query: 268 QILGDKYGDVV------HLYER-----DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSV 316
+ D DV H+ + D I + P Q +S ++ I + ++
Sbjct: 758 DAISDGE-DVTIPGIIEHIEQAGVHSGDS---------IAVLPPQSLSEEQQEKIRDYAI 807
Query: 317 RLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS--EEITGIDVVQSQIKIAQG 374
++AK LG+ ++F+L +D Y +EVNPR T+ + TG+ + + K+ G
Sbjct: 808 KIAKKLGFRGIMNIQFVL-ANDEIYVLEVNPR--ASRTVPFVSKATGVPLAKLATKVLLG 864
Query: 375 KSLTELGL 382
KSL ELG
Sbjct: 865 KSLAELGY 872
|
Length = 1068 |
| >gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-15
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
++ +PM G + + V+VG VK L ++ MK E I A ADGVVKEI V+ G V
Sbjct: 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPV 129
Query: 1417 AQNDLVVVL 1425
D + V+
Sbjct: 130 EYGDPLAVI 138
|
Length = 140 |
| >gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-15
Identities = 66/263 (25%), Positives = 122/263 (46%), Gaps = 32/263 (12%)
Query: 155 GLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214
G+E +G +K D+ L R+A + P+ E V++ E+ +PVI++
Sbjct: 111 GVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPES--EIAHSVEEALAAAKEIGYPVIVR 168
Query: 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274
AF GG G + N++ ++E +R AL++ + +LVEK + + IE +++ D
Sbjct: 169 PAFTLGGTGGGIAYNREELKEIAER----ALSASPINQVLVEKSLAGWKEIEYEVMRDSN 224
Query: 275 GDVVHLYERDCSMQR------RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAG 328
+ + + C+M+ I +AP+Q ++ + + S+++ + LG
Sbjct: 225 DNCITV----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGC 280
Query: 329 TVEFLLDKDDN-FYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKI 387
V+F L+ D +Y IEVNPR+ L+ + TG + + K+A G L EL + +
Sbjct: 281 NVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDEL---KNPV 337
Query: 388 TPQGCAIQCHLRTEDPKRNFQPS 410
T A +F+PS
Sbjct: 338 TGTTPA------------SFEPS 348
|
Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050 |
| >gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-14
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 1350 SKADSDTAGE-IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEI 1408
+ A + AGE + AP+ GNI +V V GQ V + DVL+++ MK ET I A+ G V+ I
Sbjct: 516 AAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGI 575
Query: 1409 FVEVGGQVAQNDLVVVL 1425
V+ G VA D ++ L
Sbjct: 576 AVKEGDAVAVGDTLLTL 592
|
Length = 593 |
| >gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 27/224 (12%)
Query: 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV 207
A+ + G+ I + + GDK L KA +P P T ++ + +E+
Sbjct: 66 ARYLESLGVPVINS-SDAILNAGDKFLTSQLLAKAGLPQ-PRTGL-AGSPEEALKLIEEI 122
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDD--MLVEKYIDRP--R 263
FPV+LK FG GR + + +K A E E V++YI +P R
Sbjct: 123 GFPVVLKPVFGSWGRLVSLARDKQAAE-----TLLEHFEQLNGPQNLFYVQEYIKKPGGR 177
Query: 264 HIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI---APAQDMSVSVRDAITETSVRLAK 320
I V ++GD+ V+ ++ R + + + + I E +++ AK
Sbjct: 178 DIRVFVVGDE---VI------AAIYRITSGHWRTNLARGGKAEPCPLTEEIEELAIKAAK 228
Query: 321 SLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDV 364
+LG G ++ L +D EVNP E S + TG+++
Sbjct: 229 ALGLDVVG-IDLLESEDRGLLVNEVNP--NPEFKNSVKTTGVNI 269
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). Length = 277 |
| >gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 52/259 (20%), Positives = 108/259 (41%), Gaps = 42/259 (16%)
Query: 100 VDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY----GFLSE-REDFAKAVIGA 154
D+ ++V P V I ++ I K +D + P L++ R+ F + +
Sbjct: 43 ADKFYVV----PKVTDPNYIDRLLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKV 98
Query: 155 GLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKE--FCDEVEFPVI 212
+ + V++ DK L + + +P P + P ++ K E++FP+
Sbjct: 99 ----LVSSKEVIEICNDKWLTYEFLKENGIPT-PKSYLP-ESLEDFKAALAKGELQFPLF 152
Query: 213 LKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIE--VQIL 270
+K G G+ V +K+ +E +++++++I+ E V +L
Sbjct: 153 VKPRDGSASIGVFKVNDKEELE----FLLEYV------PNLIIQEFIE---GQEYTVDVL 199
Query: 271 GDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDA-ITETSVRLAKSLGYSNAGT 329
D G+V+ + R +++ A V+V+D + + + RLA++LG
Sbjct: 200 CDLNGEVISIVPR--------KRIEVRAGETSKGVTVKDPELFKLAERLAEALGARGPLN 251
Query: 330 VEFLLDKDDNFYFIEVNPR 348
++ + D Y E+NPR
Sbjct: 252 IQCFVT-DGEPYLFEINPR 269
|
Length = 326 |
| >gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 51/215 (23%), Positives = 86/215 (40%), Gaps = 40/215 (18%)
Query: 154 AGLEFIGPAPNVLKT-LG-DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE--- 208
G+ + G VL + L DK+L + +P + C++V
Sbjct: 88 MGIPYTGS--GVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPL 145
Query: 209 -FPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKD-DMLVEKYIDRPRHIE 266
FPVI+K A G G+ V +++ ++ A F D ++LVE++I R +E
Sbjct: 146 GFPVIVKPAREGSSVGVSKVKSEEELQAALDEA-------FEYDEEVLVEQFIK-GRELE 197
Query: 267 VQILGDKYG--------------DVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAIT 312
V ILG++ D Y + VI PA + + + I
Sbjct: 198 VSILGNEEALPIIEIVPEIEGFYDYEAKYLDG-----STEYVI---PA-PLDEELEEKIK 248
Query: 313 ETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347
E +++ K+LG V+F LD++ Y E+N
Sbjct: 249 ELALKAYKALGCRGLARVDFFLDEEGEIYLNEINT 283
|
This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315 |
| >gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1357 AGE--IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414
AGE + APMPG I+ + V+ GQQVK L+++ MK E I A DGVVK+I V+ G
Sbjct: 82 AGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGD 141
Query: 1415 QVAQNDLVVVL 1425
V ++ L
Sbjct: 142 TVDTGQPLIEL 152
|
Length = 153 |
| >gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 182 ADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRMVANKDAIEENF 237
A +P+ P +T D V ++VE +PV +K A G G+ V +++ ++
Sbjct: 5 AGIPVAP--FIVLTREDWVLATKEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAI 62
Query: 238 KRAQSEALASFGKD-DMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS-----MQRRY 291
+ A F D +L+E+ I R IE +LG++ +V + E S + +Y
Sbjct: 63 EEA-------FQYDNKVLIEEAI-EGREIECAVLGNEDLEVSPVGEIRLSGGFYDYEAKY 114
Query: 292 Q--KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347
I PA D+ V + I E +++ K+LG ++F L +D Y EVN
Sbjct: 115 IDSSAQIIVPA-DLPEEVEEQIQELALKAYKALGCRGLARIDFFLTEDGEIYLNEVNT 171
|
This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 201 |
| >gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-10
Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 179 ALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFK 238
L VP +E VT V++ F +++ FP+I++ A+ GG G + N + +E+ FK
Sbjct: 138 ELGEPVP----ESEIVTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFK 193
Query: 239 RAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV---- 294
+ + L+E+ I + IE +++ D+ G+ + + C+M+ V
Sbjct: 194 QG--LQASPI--HQCLLEESIAGWKEIEYEVMRDRNGNCITV----CNME-NIDPVGIHT 244
Query: 295 ---IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQ 350
I +AP+Q ++ + S+++ +LG ++F LD K +Y IEVNPR+
Sbjct: 245 GDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVS 304
Query: 351 VEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
L+ + TG + + K+A G +L EL
Sbjct: 305 RSSALASKATGYPIAKIAAKLAVGYTLNEL 334
|
Length = 1068 |
| >gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-10
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 1354 SDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG 1413
+ A ++ + GN +V V+VG +V+ L+++ MK E + A G V +I + G
Sbjct: 1129 PEGAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPG 1188
Query: 1414 GQVAQNDLVVVLD 1426
V D+V VL+
Sbjct: 1189 DMVDAGDIVAVLE 1201
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201 |
| >gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 8e-10
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 28/197 (14%)
Query: 206 EVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI 265
+ +PV+++ ++ GGR M +V + ++ K A+ + +LV+KY+ I
Sbjct: 735 RIGYPVVVRPSYVLGGRAMEIVYS----DDKLKTYLETAVEVDPERPVLVDKYLSDATEI 790
Query: 266 EVQILGDKYGDVV-------------HLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAIT 312
+V L D G+VV H + CS+ P Q + S I
Sbjct: 791 DVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSL-----------PTQTIPSSCLATIR 839
Query: 313 ETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372
+ + +LAK L ++ + Y IE NPR + G + + +
Sbjct: 840 DWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAIGHPLAKYASLVM 899
Query: 373 QGKSLTELGLCQEKITP 389
GKSL +LG +E I
Sbjct: 900 SGKSLKDLGFTEEVIPA 916
|
Length = 1102 |
| >gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-09
Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 31/213 (14%)
Query: 154 AGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK--VKEFCDEVEFPV 211
G+ ++G DK++ + +P+ P + V+E + + FP+
Sbjct: 86 LGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPL 145
Query: 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKD-DMLVEKYIDRPRHIEVQIL 270
+K A G G V E + + A A F D D+L E+ I R IEV +L
Sbjct: 146 FVKPAREGSSVGRSPVNV----EGDLQSALELA---FKYDRDVLREQGI-TGREIEVGVL 197
Query: 271 GDKYGDVV-----------HLYERDCSMQRRYQ---KVIQIAPAQDMSVSVRDAITETSV 316
G+ Y + Y+ + Y PA ++ + + I E ++
Sbjct: 198 GNDYEEQALPLGEIPPKGEEFYDYEAK----YLSTGGAQYDIPA-GLTDEIHEEIKELAL 252
Query: 317 RLAKSLGYSNAGTVEFLLDKDD-NFYFIEVNPR 348
R K+LG V+F +D D+ F +EVN
Sbjct: 253 RAYKALGCLGLARVDFFVDDDEGEFVLLEVNTN 285
|
Length = 317 |
| >gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 16/218 (7%)
Query: 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV 207
A+ + G+ I +V++ GDK+ KA VP P T D + + + +
Sbjct: 65 ARLLEALGVPVINS-SHVIEACGDKIFTYLKLAKAGVPT-P-RTYLAFDREAALKLAEAL 121
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP-RHIE 266
+PV+LK G GR + ++ +KD +E + E L +++YI++P R I
Sbjct: 122 GYPVVLKPVIGSWGRLVALIRDKDELESLLE--HKEVLGGSQHKLFYIQEYINKPGRDIR 179
Query: 267 VQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSN 326
V ++GD+ + +Y + + + P + + + E +V+ A+++G
Sbjct: 180 VFVIGDEA--IAAIYRYSNHWRTNTARGGKAEPCP-----LDEEVEELAVKAAEAVG-GG 231
Query: 327 AGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDV 364
++ K+ EVN + ++++ +TG++V
Sbjct: 232 VVAIDIFESKERGLLVNEVNHVPEFKNSVR--VTGVNV 267
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. Length = 280 |
| >gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVA 1417
+ AP+ G+I++VKV GQ V + +VL+++ MK ET I A+A G V+EI V+VG V+
Sbjct: 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVS 577
Query: 1418 QND 1420
Sbjct: 578 VGQ 580
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582 |
| >gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-09
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
A + +PMPG I++V V VG QV +N L+++ MK E I AS+ G V I V G V
Sbjct: 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVV 120
Query: 1417 AQND 1420
D
Sbjct: 121 NPGD 124
|
Length = 130 |
| >gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-09
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 35/200 (17%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P P+ L D++ + K +P+ P V + ++ ++ P +LK GG
Sbjct: 90 PGPDALAIAQDRLTEKQFLDKLGIPVAP--FAVVDSAEDLEAALADLGLPAVLKTRRGGY 147
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILG--DKYG-- 275
G+G ++ + + +E A A G ++E+++ R EV ++ + G
Sbjct: 148 DGKGQWVIRSAEDLE--------AAWALLGSVPCILEEFVPFER--EVSVIVARGRDGEV 197
Query: 276 ---DVVHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT- 329
+V R+ IAPA+ +S ++ E + R+A+ L Y G
Sbjct: 198 VFYPLVENVHRNGILRT--------SIAPAR-ISAELQAQAEEIASRIAEELDYV--GVL 246
Query: 330 -VEFLLDKDDNFYFIEVNPR 348
VEF + D E+ PR
Sbjct: 247 AVEFFVTGDGELLVNEIAPR 266
|
Length = 372 |
| >gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 7e-09
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK+ + A +P P +T + + D++ P+++K A G G+ V +
Sbjct: 98 DKLRTKLVWQAAGLPTPPWIV--LTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEE 155
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL---------- 280
D ++ + A + D++LVEKYI + R + V +LG K V+ +
Sbjct: 156 DELQAALELA-----FKYD-DEVLVEKYI-KGRELTVAVLGGKALPVIEIVPAGEFYDYE 208
Query: 281 --YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDD 338
Y + +Y I PA + + + E +++ ++LG G V+F+LD+D
Sbjct: 209 AKYLAGGT---QY-----ICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDG 259
Query: 339 NFYFIEVN 346
Y +EVN
Sbjct: 260 KPYLLEVN 267
|
Length = 304 |
| >gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 9e-09
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I+E VK G V++ DVL + K + A A GV+ +I VE G V ++ V+
Sbjct: 15 GTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74 |
| >gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-08
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 46/215 (21%)
Query: 194 VTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDM 253
T V++ E +E+ +PV+++ ++ GGR M +V +++ +E + EA+ +
Sbjct: 690 ATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMR----EAVKVSPDHPV 745
Query: 254 LVEKYIDRPRHIEVQILGDKYGDVV-------HLYER------D--CSMQRRYQKVIQIA 298
L++K+++ ++V + D G+ V H+ E D CS+
Sbjct: 746 LIDKFLEGAIEVDVDAICD--GEDVLIGGIMEHI-EEAGVHSGDSACSL----------- 791
Query: 299 PAQDMSVSVRDAITETSVRLAKSL---GYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT- 354
P Q +S + + I E + +LA L G N V+F + KDD Y IEVNPR T
Sbjct: 792 PPQTLSEEIIEEIREYTKKLALELNVVGLMN---VQFAV-KDDEVYVIEVNPR--ASRTV 845
Query: 355 --LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKI 387
+S + TG+ + + ++ GK L ELG + I
Sbjct: 846 PFVS-KATGVPLAKIAARVMLGKKLAELGYTKGLI 879
|
Length = 1066 |
| >gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 25/165 (15%)
Query: 192 EPVTDVDKVKEFCDEVEFPVILKAAFGG-GGRGMRMVANKDAIEENFKRAQSEALASFGK 250
++++ E E+ +P +LKA GG G+G +V ++ I + A G
Sbjct: 12 AAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEADIPQ--------AWEELGG 63
Query: 251 DDMLVEKYIDRPRHIEVQILGDKYG-----DVVHLYERD--CSMQRRYQKVIQIAPAQDM 303
++VE+++ + + V ++ G V + D C +APA+ +
Sbjct: 64 GPVIVEEFVPFDKELSVLVVRSVDGETAFYPPVETIQEDGIC--------RESVAPAR-V 114
Query: 304 SVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348
S + E + ++ LG VE + D + E+ PR
Sbjct: 115 PDSQQAKAQEIAKKIVDELGGVGIFGVELFVLPDGDLLVNELAPR 159
|
This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 171 |
| >gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I+E KVG +VK+ DVL+ + K + A GV+ +I VE G V ++ +
Sbjct: 17 GTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARI 76
Query: 1426 DV 1427
+
Sbjct: 77 EE 78
|
Length = 404 |
| >gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-08
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 613 KHVLLTDTTFRDAHQSLLATRVRTYDL 639
K V +TDTT RDAHQSLLATR+RT D+
Sbjct: 2 KKVKITDTTLRDAHQSLLATRMRTEDM 28
|
Length = 592 |
| >gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 3e-08
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 1321 DHGERTVFFLYNGQLRSLDKNKAK---KLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQ 1377
+HG+++ F +G + ++ K++ S + G+I +PG+II + V G
Sbjct: 486 EHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSAGD 545
Query: 1378 QVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427
+VK ++V+ MK ET I A A+GVV EI + G +V +++ ++V
Sbjct: 546 EVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595
|
Length = 596 |
| >gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-08
Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P+P+ L+ D+++ + KA +P+ P V +++ ++ FP +LK GG
Sbjct: 89 PSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADLGFPAVLKTRRGGY 146
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG---- 275
G+G + + +E RA A ++E+++ R I V + G
Sbjct: 147 DGKGQWRIRSDADLEL---RAAGLAE----GGVPVLEEFVPFEREISVIVARSNDGEVAF 199
Query: 276 -DVVHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEF 332
V R+ IAPA+ + ++ E + ++A+ L Y VEF
Sbjct: 200 YPVAENVHRNGILRT--------SIAPAR-IPDDLQAQAEEMAKKIAEELDYVGVLAVEF 250
Query: 333 LLDKDDNFYFIEVNPR 348
+ D E+ PR
Sbjct: 251 FVTPDGELLVNEIAPR 266
|
Length = 375 |
| >gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-08
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 1359 EIGAPMP------GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEV 1412
I P G +++ KVG +VKK DVL + MK + + A G VK++ V+
Sbjct: 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60
Query: 1413 GGQV 1416
G +V
Sbjct: 61 GTKV 64
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73 |
| >gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 40/205 (19%), Positives = 84/205 (40%), Gaps = 34/205 (16%)
Query: 170 GDKVLARDAALKADVPIIPGTTEPVTDV----DKVKEFCDEVE-FPVILKAAFGGGGRGM 224
DK + K +P+ P T + + ++F ++++ FPV++K+ FG G G+
Sbjct: 2 RDKAKSHQLLAKHGIPV------PNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGV 55
Query: 225 RMVANKDAIE---ENFKRAQSEALASFGKDDMLVEKYIDRP--RHIEVQILGDKYGDVVH 279
+ ++ ++E E FK K+ +LV+++I R I ++G + +H
Sbjct: 56 FLAEDEQSLEQLLEAFKWL---------KNQILVQEFIAEAGNRDIRCLVVGGEVVGAIH 106
Query: 280 LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDN 339
+ + + P Q + E +++ A+++G G +
Sbjct: 107 RQSNEGDFRTNLHRGGVAEPYQ-----LSQEEEEIAIKAAQAMGLDVLGVD--IFRSKRG 159
Query: 340 FYFIEVNPRLQVEHTLSEEITGIDV 364
EVN ++ E TGI++
Sbjct: 160 LLVCEVNSSPGLKG--IERTTGINI 182
|
This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK. Length = 190 |
| >gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-08
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
A ++ A + +++EV V G Q+ K D L+++ MK E + A G V ++ V VG +
Sbjct: 2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVI 61
Query: 1417 AQNDLVVVLD 1426
DL+ V+
Sbjct: 62 QAGDLIAVIS 71
|
Length = 71 |
| >gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 147 FAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT----DVDKVKE 202
F + G+ I P ++ +K+ KA +P+ P T D D+ E
Sbjct: 96 FLRLAERKGVPVIND-PQSIRRCRNKLYTTQLLAKAGIPV------PPTLITRDPDEAAE 148
Query: 203 FCDEV-EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDR 261
F E FPV+LK G GGRG+ +V + D E L G+ ++V++YI +
Sbjct: 149 FVAEHLGFPVVLKPLDGSGGRGVFLVEDAD---PELLSLL-ETLTQEGRKLIIVQEYIPK 204
Query: 262 PRH-IEVQILGDKYGDVVHLYERDCSMQRRYQK------VIQIAPAQDMSVSVRDAITET 314
+ ++G G+VV +Y ++ R + + A+ + + E
Sbjct: 205 AKRDDRRVLVGG--GEVVAIY----ALARIPASGDFRSNLARGGRAE--PCELTEEEEEL 256
Query: 315 SVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347
+V+ A +LG G V+ + D D Y EVN
Sbjct: 257 AVKAAPALGLGLVG-VDIIED-KDGLYVTEVNV 287
|
Length = 318 |
| >gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-07
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I+E VKVG VK+ L + K I + G V ++ VE G V ++ V+
Sbjct: 17 GEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVI 76
Query: 1426 DV 1427
+
Sbjct: 77 EE 78
|
Length = 411 |
| >gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-07
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 19/232 (8%)
Query: 155 GLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVIL 213
G+E IG + +K D+ L + A K + P T +D+ E +++ EFP+I+
Sbjct: 128 GVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGI--ATTLDECFEIAEDIGEFPLII 185
Query: 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK 273
+ AF GG G + NK+ E K + ++ S +LVEK + + E++++ D
Sbjct: 186 RPAFTLGGTGGGIAYNKEEFETICKAGLAASITS----QVLVEKSLLGWKEYELEVMRDL 241
Query: 274 YGDVVHLYERDCS------MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNA 327
+VV + CS M I +APAQ ++ + + SV + + +G
Sbjct: 242 ADNVVII----CSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECG 297
Query: 328 GT-VEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377
G+ V+F ++ D IE+NPR+ L+ + TG + + K++ G +L
Sbjct: 298 GSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTL 349
|
Length = 1102 |
| >gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 27/196 (13%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P+P+ L + D++ + K +P+ P + D +++ E+ FPV+LKA GG
Sbjct: 88 PSPDALAIIQDRLTQKQFLQKLGLPVPP--FLVIKDEEELDAALQELGFPVVLKARTGGY 145
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD--- 276
GRG + N+ + +A G + +VE+++ R + V + G+
Sbjct: 146 DGRGQYRIRNEADLP--------QAAKELGDRECIVEEFVPFERELSVIVARSADGETAF 197
Query: 277 --VVHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEF 332
VV +D +APA + +++ E + RL + LGY VE
Sbjct: 198 YPVVENIHQDGIL--------RYVVAPAA-VPDAIQARAEEIARRLMEELGYVGVLAVEM 248
Query: 333 LLDKDDNFYFIEVNPR 348
+ D E+ PR
Sbjct: 249 FVLPDGRLLINELAPR 264
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 352 |
| >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-07
Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 36/217 (16%)
Query: 154 AGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT------DVDK-VKEFCDE 206
G + GP+ DKVL + A VP++P +P+T + + + +
Sbjct: 551 IGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVP--YQPLTLAGWKREPELCLAHIVEA 608
Query: 207 VEFPVILKAAFGGGGRGMRMVAN----KDAIEENFKRAQSEALASFGKDDMLVEKYIDRP 262
FP+ +K A G G+ V N +D I E F D+ VE+
Sbjct: 609 FSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY----------DTDVFVEESRLGS 658
Query: 263 RHIEVQILGDKYGD--VVHLYERDC------SMQRRY----QKVIQIAPAQDMSVSVRDA 310
R IEV LGD + +ER Q +Y + QI D+S ++
Sbjct: 659 REIEVSCLGDGSSAYVIAGPHER-RGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQ 717
Query: 311 ITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347
+ E + R+ + L + ++F LD++ NF+ E+NP
Sbjct: 718 VLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNP 754
|
Length = 809 |
| >gnl|CDD|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 819 LNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG 878
L++ ++L K +E+GA +C D G+L P L E + +H H+ G
Sbjct: 142 LDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSE-LVKGPVSIHCHNDFGLA 200
Query: 879 VATTLACVKAGADIVDV 895
VA TLA + AGAD V V
Sbjct: 201 VANTLAALAAGADQVHV 217
|
Length = 488 |
| >gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 6e-07
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 819 LNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNIL--IHVHTHDMAG 876
L++ ++ + +E+GA + + D G L P LI +E PNI I VH H+ G
Sbjct: 142 LDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLG 201
Query: 877 TGVATTLACVKAGADIVDV 895
VA +LA V+AGA V+
Sbjct: 202 LAVANSLAAVEAGARQVEC 220
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 268 |
| >gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-07
Identities = 61/268 (22%), Positives = 105/268 (39%), Gaps = 31/268 (11%)
Query: 126 AKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLG-------------DK 172
A ++ D IH F+S + A ++ + FI A V + LG DK
Sbjct: 53 ADTSDPDRIH---RFVSSLDGVA-GIMSSSEYFIEVASEVARRLGLPAANTEAIRTCRDK 108
Query: 173 VLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDA 232
+ + P T + D + +PV++K G G G+R+ A+
Sbjct: 109 KRLARTLRDHGIDV-PRTHALALRAV-ALDALDGLTYPVVVKPRMGSGSVGVRLCASVAE 166
Query: 233 IEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG-DVVHLYERDCSMQRRY 291
A AL G LV+ Y++ + V+ L G V+ + + +
Sbjct: 167 AA-----AHCAALRRAGTRAALVQAYVEGDEY-SVETLTVARGHQVLGITRKHLGPPPHF 220
Query: 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDKDDNFYFIEVNPRLQ 350
++ PA +S R+ I T +R ++GY+ E + + D IE+NPRL
Sbjct: 221 VEIGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRV-RGDTVVIIEINPRLA 278
Query: 351 --VEHTLSEEITGIDVVQSQIKIAQGKS 376
+ L EE G+D++ I + G +
Sbjct: 279 GGMIPVLLEEAFGVDLLDHVIDLHLGVA 306
|
Length = 887 |
| >gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-07
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1373 VKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQND--LVVV 1424
V+VG VK+ L ++ MK I A GVV EI VE GQ + L V+
Sbjct: 102 VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVE-NGQPVEFGQPLFVI 154
|
Length = 155 |
| >gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-06
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLI-VMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
GEI +IE VKVG V+++ LI V + K I + GVVKEI V+VG +V
Sbjct: 128 GEITE---VEVIEWLVKVGDTVEEDQSLITVET-DKATMEIPSPVAGVVKEIKVKVGDKV 183
Query: 1417 AQNDLVVVLDV 1427
+ L+VV++V
Sbjct: 184 SVGSLLVVIEV 194
|
Length = 547 |
| >gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
+IG +IEV VKVG V + LI + K + A A GVVK + V+VG V
Sbjct: 123 DIGDIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPT 182
Query: 1419 NDLVVVLDV 1427
DL++ L V
Sbjct: 183 GDLILTLSV 191
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546 |
| >gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
++ A M GN+ ++ VKVG V++ ++++ MK E I A G VK+I V+ G V +
Sbjct: 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNE 62
Query: 1419 NDLVVVLD 1426
D+++ ++
Sbjct: 63 GDVLLEIE 70
|
Length = 70 |
| >gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 3e-06
Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 53/220 (24%)
Query: 151 VIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP 210
+IGA LE I K D+ L ++A K +P+ +++ E +E+ +P
Sbjct: 115 LIGAKLEAID------KAE-DRELFKEAMKKIGLPVPRSGI--AHSMEEALEVAEEIGYP 165
Query: 211 VILKAAFGGGGRGMRMVANKDAIEENFKR--AQSEALASFGKDDMLVEKYIDRPRHIEVQ 268
VI++ +F GG G + N++ +EE +R S ++L+E+ + + E +
Sbjct: 166 VIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPV------TEVLIEESLLGWKEYEYE 219
Query: 269 ILGDKYGDVVHLYERDCSMQRRYQKV----------IQIAPA--------QDMSVSVRDA 310
++ DK + + + CS+ + + I +APA Q + RDA
Sbjct: 220 VMRDKNDNCIIV----CSI----ENIDPMGVHTGDSITVAPAQTLTDKEYQML----RDA 267
Query: 311 ITETSVRLAKSLGYSNAGT-VEFLLD-KDDNFYFIEVNPR 348
S+ + + +G G V+F L+ KD + IE+NPR
Sbjct: 268 ----SIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPR 303
|
Length = 1066 |
| >gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGTGVATT 882
++ K +E+GA + L D G+ P +I + + PN +++ VH H+ G VA +
Sbjct: 150 EVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANS 209
Query: 883 LACVKAGADIVDVA 896
LA V+AGAD V+
Sbjct: 210 LAAVEAGADQVEGT 223
|
Length = 409 |
| >gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 3e-06
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 823 EDLAKQ--LVES-GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGV 879
E+LA+Q L+ES GA + + D AG + P + + + RE + H H+ G V
Sbjct: 141 EELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAV 200
Query: 880 ATTLACVKAGADIVDVAA 897
A +LA V+AGA +D +
Sbjct: 201 ANSLAAVEAGATRIDGSL 218
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 263 |
| >gnl|CDD|163676 cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 5e-06
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
++A++L++ G + L D G+ P + L+ + E++P+ + +H HD G +A L
Sbjct: 153 EVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANIL 212
Query: 884 ACVKAGADIVD 894
A ++AG D
Sbjct: 213 AALEAGVRRFD 223
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 274 |
| >gnl|CDD|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+ +GA + + D G P LI RE PNI ++ VH H+ G VA +LA V
Sbjct: 156 INAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAV 215
Query: 887 KAGADIVDVAADSMSGI 903
+ GA V+ ++GI
Sbjct: 216 QNGARQVECT---INGI 229
|
This is the first enzyme of leucine biosynthesis. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 494 |
| >gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 823 EDLAKQ--LVES-GAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTG 878
E LA+Q L+ES GA + + D AG + P + + + + P + H H
Sbjct: 143 EKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLA 202
Query: 879 VATTLACVKAGADIVDVAADSM 900
VA ++A ++AGA +D + +
Sbjct: 203 VANSIAAIEAGATRIDASLRGL 224
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated [Energy metabolism, Other]. Length = 333 |
| >gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
+ E+ VKVG V+ LI + K + A G VKEI V VG +V+ L++V
Sbjct: 118 VEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVF 177
Query: 1426 DV 1427
+V
Sbjct: 178 EV 179
|
Length = 633 |
| >gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
+IG G +IEV VK G +V+ LI + K + +SA G++KEI V+VG +
Sbjct: 7 DIGDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPV 66
Query: 1419 NDLVVVLDV 1427
++ L+V
Sbjct: 67 GGVIATLEV 75
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546 |
| >gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLI-VMSVMKTETLIHASADGVVKEIFVEVGGQVA 1417
+IG + +IE VK G V+++ L+ V + K I + A GVVKEI V+VG V+
Sbjct: 9 DIGEVVEVEVIEWLVKEGDTVEEDQPLVTVET-DKATMEIPSPAAGVVKEIKVKVGDTVS 67
Query: 1418 QNDLVVVLDV 1427
L+ V++
Sbjct: 68 VGGLLAVIEA 77
|
Length = 547 |
| >gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
+IGA + E+ VKVG +V+ LI + K + + GVVKEI V+VG +V
Sbjct: 9 DIGAD-EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVET 67
Query: 1419 NDLVVVLDV 1427
L+++ +
Sbjct: 68 GALIMIFES 76
|
Length = 633 |
| >gnl|CDD|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 823 EDLAKQ--LVES-GAQVLCLKDMAGLLKPTAAKLLIGSFREK-YPNILIHVHTHDMAGTG 878
E LA+Q L+ES GAQ + + D AG L P + + + R P+ + H H+ G G
Sbjct: 144 EKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLG 203
Query: 879 VATTLACVKAGADIVD 894
VA +LA V+AGA +D
Sbjct: 204 VANSLAAVEAGATRID 219
|
Length = 337 |
| >gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-05
Identities = 51/203 (25%), Positives = 76/203 (37%), Gaps = 52/203 (25%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK+L + A +P+ P +T D + E+E PV +K A G G+
Sbjct: 123 DKILTKRLLAAAGIPVAPYVV--LTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISK 180
Query: 227 VANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILG-------------- 271
V N++ + A F D +LVE+ I R IE +LG
Sbjct: 181 VKNEEELAAALDLA-------FEYDRKVLVEQGIK-GREIECAVLGNDPKASVPGEIVKP 232
Query: 272 -------DKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGY 324
KY D I PA D+S + + I E +++ K+LG
Sbjct: 233 DDFYDYEAKYLD---------------GSAELIIPA-DLSEELTEKIRELAIKAFKALGC 276
Query: 325 SNAGTVEFLLDKDDNFYFIEVNP 347
S V+F L +D Y E+N
Sbjct: 277 SGLARVDFFLTEDGEIYLNEINT 299
|
Length = 333 |
| >gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-05
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
+IG + EV VKVG +V+ LI + K + A G VKEI V VG +V
Sbjct: 213 DIGGD-EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKT 271
Query: 1419 NDLVVVLDV 1427
L++ +V
Sbjct: 272 GSLIMRFEV 280
|
Length = 633 |
| >gnl|CDD|205711 pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 2e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389
I P+ G ++ V VK GQ VKK DVL +
Sbjct: 4 NIAPPVSGRVVAVNVKEGQSVKKGDVLFTLD 34
|
Length = 50 |
| >gnl|CDD|233719 TIGR02090, LEU1_arch, isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 753 AEVGAFCRL-------ASQAGIDIFRVF---DPLNSVPNLVKGMDAVQQVTGGSTIVEAT 802
AE+ + R A G+D F P++ L K D V + VEA
Sbjct: 64 AEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLE-----KAVEA- 117
Query: 803 ICYAGD------LTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIG 856
+ YA + + + + +++ + K+ E+GA + + D G+L P + LI
Sbjct: 118 VEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIK 177
Query: 857 SFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895
+E + I VH H+ G A ++A VKAGA+ V V
Sbjct: 178 KLKENV-KLPISVHCHNDFGLATANSIAGVKAGAEQVHV 215
|
Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by TIGR00973. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterized as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. Length = 363 |
| >gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 819 LNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG 878
L++ + AK E+GA + D G+L P L+ E +I I VH H+ G
Sbjct: 144 LDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMA 202
Query: 879 VATTLACVKAGADIVDV 895
A LA ++AGA V
Sbjct: 203 TANALAGIEAGAKQVHT 219
|
Length = 378 |
| >gnl|CDD|223106 COG0027, PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 32/159 (20%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 194 VTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDM 253
+++++ +++ FP ++K G+G +V + + +E+ ++ AQ G+ +
Sbjct: 135 ADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGR--V 192
Query: 254 LVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS----MQRRYQKVIQIAPAQDMSVSVRD 309
+VE+++ E+ +L + D + C+ Q P Q+MS + +
Sbjct: 193 IVEEFVK--FDFEITLLTVRAVDGTGSF---CAPIGHRQEDGDYRESWQP-QEMSEAALE 246
Query: 310 AITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348
+ R+ +LG VE + D+ F EV+PR
Sbjct: 247 EAQSIAKRVTDALGGRGLFGVELFVKGDE-VIFSEVSPR 284
|
Length = 394 |
| >gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDM 874
YS +L + + E V + D G + P K +I R +I + H H+
Sbjct: 134 GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNN 193
Query: 875 AGTGVATTLACVKAGADIVDVAADSMSGICSQPAMG 910
+A TL ++ G +I+D ++ G MG
Sbjct: 194 LQLALANTLEAIELGVEIIDA---TVYG------MG 220
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 266 |
| >gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 613 KHVLLTDTTFRDAHQSLLATRVRTYDL 639
K + +TD RDAHQSL ATR+R D+
Sbjct: 3 KPLAITDVVLRDAHQSLFATRLRLDDM 29
|
Length = 593 |
| >gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 813 NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTH 872
N + S +Y L L + + + L D G+L P I ++YPN+ H H
Sbjct: 140 NGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAH 199
Query: 873 DMAGTGVATTLACVKAGA 890
+ VA LA VKAG
Sbjct: 200 NDYDLAVANVLAAVKAGI 217
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 280 |
| >gnl|CDD|224734 COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 38/194 (19%)
Query: 157 EFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216
E +G +P ++ DK L A L+ V P T + K ++K A
Sbjct: 100 ENLGCSPRAIRVAADKRLTYKA-LRDAVKQPP--TREWAEEPKK----------YVIKPA 146
Query: 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD 276
G GG G+ + D + +++I+ H+ V + +
Sbjct: 147 DGCGGEGILFGRDFP-------------------DIEIAQEFIE-GEHLSVSLSVGEKVL 186
Query: 277 VVHLYERDCSMQ-RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335
+ + + P ++ E ++R + + N G V L
Sbjct: 187 PLSVNRQFIIFAGSELVYNGGRTPIDH---ELKREAFEEAIRAVECIPGLN-GYVGVDLV 242
Query: 336 KDDNFYFIEVNPRL 349
D Y IE+NPR
Sbjct: 243 LSDEPYVIEINPRP 256
|
Length = 307 |
| >gnl|CDD|217166 pfam02655, ATP-grasp_3, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 48/193 (24%), Positives = 74/193 (38%), Gaps = 48/193 (24%)
Query: 170 GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVAN 229
DK+ A A VP+ P T E E E I+K G GG G+R V N
Sbjct: 1 SDKLKTYKALKNAGVPV-PTTLSA--------EEPTEEEKKYIVKPRDGCGGEGVRFVEN 51
Query: 230 KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQR 289
EE ++++++++I+ + V +L D V+ L S+ R
Sbjct: 52 GREDEEFI-------------ENVIIQEFIE-GEPLSVSVLSDG-EKVLPL-----SVNR 91
Query: 290 RYQKVIQIAPAQDM----SVSVRDAITETSVRLAKSL--------GYSNAGTVEFLLDKD 337
+ I A + + R + E LA+ + GY V+ +L D
Sbjct: 92 QL---IDNAGSGFVYAGNVTPSRTELKEELEELAEEVVEALPGLNGYVG---VDLVL-TD 144
Query: 338 DNFYFIEVNPRLQ 350
Y IEVNPR+
Sbjct: 145 GGPYVIEVNPRIT 157
|
No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman). Length = 159 |
| >gnl|CDD|233965 TIGR02660, nifV_homocitr, homocitrate synthase NifV | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 818 SLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGT 877
++ +LA+ E+GA D G+L P + L+ + R+ + + +H H+ G
Sbjct: 140 DPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGM 198
Query: 878 GVATTLACVKAGADIVDV 895
A TLA V+AGA V+
Sbjct: 199 ATANTLAAVRAGATHVNT 216
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 365 |
| >gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
AP P + V+VG +VKK ++ ++ MK I A G V EI VE G V
Sbjct: 94 APSPDA--KPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPV 146
|
This model is designed to identify biotin carboxyl carrier protein as a peptide of acetyl-CoA carboxylase. Scoring below the trusted cutoff is a related protein encoded in a region associated with polyketide synthesis in the prokaryote Saccharopolyspora hirsuta, and a reported chloroplast-encoded biotin carboxyl carrier protein that may be highly derived from the last common ancestral sequence. Scoring below the noise cutoff are biotin carboxyl carrier domains of other enzymes such as pyruvate carboxylase.The gene name is accB or fabE [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 156 |
| >gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 25/204 (12%)
Query: 154 AGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVIL 213
G + A T+ + + R AA + +P +D+++E +++ +P ++
Sbjct: 84 EGYFVVPNARATKLTMNREGIRRLAAEELGLPTSR--YMFADSLDELREAVEKIGYPCVV 141
Query: 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQIL--- 270
K G+G +V + IE+ ++ AQ A G+ ++VE++ID + +I
Sbjct: 142 KPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGR--VIVEEFID----FDYEITLLT 195
Query: 271 ------GDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGY 324
+ + + D +Q Q+MS + + R+ +LG
Sbjct: 196 VRHVDGNTTFCAPIGHRQIDGDYHESWQ-------PQEMSEKALEEAQRIAKRITDALGG 248
Query: 325 SNAGTVEFLLDKDDNFYFIEVNPR 348
VE + K D F EV+PR
Sbjct: 249 YGLFGVELFV-KGDEVIFSEVSPR 271
|
This enzyme is an alternative to PurN (TIGR00639) [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 380 |
| >gnl|CDD|163679 cd07941, DRE_TIM_LeuA3, Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889
E+GA L L D G P ++ RE+ P + + +H H+ +G VA +LA V+AG
Sbjct: 161 AEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAG 220
Query: 890 ADIV 893
A V
Sbjct: 221 ATQV 224
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 273 |
| >gnl|CDD|234864 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+++GA + + D G P LI + RE+ PNI +I VH H+ G VA +LA V
Sbjct: 159 IDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAV 218
Query: 887 KAGADIV 893
+AGA V
Sbjct: 219 EAGARQV 225
|
Length = 513 |
| >gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 1359 EIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411
EI +P+PG V+VG V DV+ ++ VMK T + A A G V E VE
Sbjct: 5 EIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVE 64
Query: 1412 VGGQVAQNDLVVVLD 1426
G V ++ ++
Sbjct: 65 DGEPVEAGQVLARIE 79
|
Length = 80 |
| >gnl|CDD|178767 PLN03228, PLN03228, methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.004
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 828 QLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP---NILIHVHTHDMAGTGVATTLA 884
+ +++GA + + D G+ P L+ + P +I+ VH H+ G A T+A
Sbjct: 247 EAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIA 306
Query: 885 CVKAGADIVDVAADSMSGI 903
+ AGA V+V +++GI
Sbjct: 307 GICAGARQVEV---TINGI 322
|
Length = 503 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1427 | |||
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 100.0 | |
| KOG0369|consensus | 1176 | 100.0 | ||
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 100.0 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 100.0 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 100.0 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 100.0 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 100.0 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 100.0 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 100.0 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| KOG0238|consensus | 670 | 100.0 | ||
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 100.0 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 100.0 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 100.0 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 100.0 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 100.0 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 100.0 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 100.0 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| KOG0368|consensus | 2196 | 100.0 | ||
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 100.0 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 100.0 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 100.0 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 100.0 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 100.0 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 100.0 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 100.0 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 100.0 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 100.0 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 100.0 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 100.0 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 100.0 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 100.0 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 100.0 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 100.0 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 100.0 | |
| PF02436 | 196 | PYC_OADA: Conserved carboxylase domain; InterPro: | 100.0 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 100.0 | |
| KOG2367|consensus | 560 | 100.0 | ||
| PRK14847 | 333 | hypothetical protein; Provisional | 100.0 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 100.0 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 100.0 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 100.0 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 100.0 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 100.0 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 100.0 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 100.0 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 100.0 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 100.0 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 100.0 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 100.0 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 100.0 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 100.0 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 100.0 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 100.0 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 100.0 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 100.0 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 100.0 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 100.0 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 100.0 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 100.0 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 99.98 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 99.97 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 99.97 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 99.97 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 99.96 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.96 | |
| KOG0369|consensus | 1176 | 99.96 | ||
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 99.96 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 99.96 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 99.96 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 99.96 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 99.95 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 99.95 | |
| KOG2368|consensus | 316 | 99.95 | ||
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 99.95 | |
| PF02785 | 107 | Biotin_carb_C: Biotin carboxylase C-terminal domai | 99.94 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 99.94 | |
| smart00878 | 107 | Biotin_carb_C Biotin carboxylase C-terminal domain | 99.93 | |
| KOG0370|consensus | 1435 | 99.93 | ||
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 99.93 | |
| KOG0237|consensus | 788 | 99.93 | ||
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 99.92 | |
| KOG0370|consensus | 1435 | 99.91 | ||
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.9 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 99.9 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 99.89 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 99.89 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.89 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.89 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 99.88 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 99.86 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 99.85 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 99.84 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.83 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.81 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 99.81 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 99.81 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 99.78 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 99.76 | |
| COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabo | 99.72 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 99.71 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 99.71 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.71 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 99.69 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.67 | |
| PRK06549 | 130 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.61 | |
| PRK05641 | 153 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.61 | |
| PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.59 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.59 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 99.56 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 99.54 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.53 | |
| PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.51 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.49 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.47 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.47 | |
| PRK06748 | 83 | hypothetical protein; Validated | 99.47 | |
| PF00364 | 74 | Biotin_lipoyl: Biotin-requiring enzyme; InterPro: | 99.47 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.46 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 99.43 | |
| TIGR00531 | 156 | BCCP acetyl-CoA carboxylase, biotin carboxyl carri | 99.41 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 99.39 | |
| PRK07051 | 80 | hypothetical protein; Validated | 99.34 | |
| COG1759 | 361 | 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu | 99.34 | |
| PLN02983 | 274 | biotin carboxyl carrier protein of acetyl-CoA carb | 99.33 | |
| KOG0368|consensus | 2196 | 99.32 | ||
| PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.32 | |
| KOG0238|consensus | 670 | 99.32 | ||
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 99.3 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.26 | |
| cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carb | 99.21 | |
| cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar | 99.01 | |
| PLN02226 | 463 | 2-oxoglutarate dehydrogenase E2 component | 99.0 | |
| PTZ00144 | 418 | dihydrolipoamide succinyltransferase; Provisional | 98.98 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 98.96 | |
| PRK05704 | 407 | dihydrolipoamide succinyltransferase; Validated | 98.82 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 98.76 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 98.75 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 98.73 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.72 | |
| TIGR01347 | 403 | sucB 2-oxoglutarate dehydrogenase complex dihydrol | 98.71 | |
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 98.62 | |
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 98.62 | |
| COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex | 98.56 | |
| PLN02528 | 416 | 2-oxoisovalerate dehydrogenase E2 component | 98.55 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 98.53 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 98.5 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 98.47 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 98.39 | |
| cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl a | 98.37 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 98.29 | |
| PRK11856 | 411 | branched-chain alpha-keto acid dehydrogenase subun | 98.2 | |
| TIGR01349 | 435 | PDHac_trf_mito pyruvate dehydrogenase complex dihy | 98.19 | |
| COG0045 | 387 | SucC Succinyl-CoA synthetase, beta subunit [Energy | 98.17 | |
| PF13549 | 222 | ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. | 98.12 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 98.11 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 98.11 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 98.09 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 98.07 | |
| PLN00124 | 422 | succinyl-CoA ligase [GDP-forming] subunit beta; Pr | 98.05 | |
| PLN02744 | 539 | dihydrolipoyllysine-residue acetyltransferase comp | 98.03 | |
| PF08442 | 202 | ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 | 98.01 | |
| PRK13380 | 144 | glycine cleavage system protein H; Provisional | 97.91 | |
| PRK09783 | 409 | copper/silver efflux system membrane fusion protei | 97.89 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 97.89 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 97.79 | |
| KOG0559|consensus | 457 | 97.73 | ||
| cd06848 | 96 | GCS_H Glycine cleavage H-protein. Glycine cleavage | 97.72 | |
| PLN02235 | 423 | ATP citrate (pro-S)-lyase | 97.69 | |
| TIGR00998 | 334 | 8a0101 efflux pump membrane protein (multidrug res | 97.67 | |
| KOG0557|consensus | 470 | 97.53 | ||
| PRK10476 | 346 | multidrug resistance protein MdtN; Provisional | 97.52 | |
| PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisi | 97.51 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 97.48 | |
| TIGR03077 | 110 | not_gcvH glycine cleavage protein H-like protein, | 97.47 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.47 | |
| TIGR01730 | 322 | RND_mfp RND family efflux transporter, MFP subunit | 97.44 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 97.43 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 97.42 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 97.4 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 97.39 | |
| PRK15136 | 390 | multidrug efflux system protein EmrA; Provisional | 97.36 | |
| PRK01202 | 127 | glycine cleavage system protein H; Provisional | 97.33 | |
| PRK03598 | 331 | putative efflux pump membrane fusion protein; Prov | 97.31 | |
| PRK09578 | 385 | periplasmic multidrug efflux lipoprotein precursor | 97.3 | |
| PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl ca | 97.29 | |
| PRK00624 | 114 | glycine cleavage system protein H; Provisional | 97.16 | |
| KOG0558|consensus | 474 | 97.16 | ||
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 97.14 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 97.13 | |
| PRK12784 | 84 | hypothetical protein; Provisional | 97.12 | |
| PRK15030 | 397 | multidrug efflux system transporter AcrA; Provisio | 97.12 | |
| PRK11578 | 370 | macrolide transporter subunit MacA; Provisional | 97.11 | |
| PRK06748 | 83 | hypothetical protein; Validated | 97.11 | |
| TIGR00527 | 127 | gcvH glycine cleavage system H protein. The genome | 97.09 | |
| PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 97.07 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 97.06 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 97.04 | |
| PRK11556 | 415 | multidrug efflux system subunit MdtA; Provisional | 97.04 | |
| PRK09859 | 385 | multidrug efflux system protein MdtE; Provisional | 97.01 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 97.0 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 96.99 | |
| COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabo | 96.92 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 96.83 | |
| TIGR03309 | 256 | matur_yqeB selenium-dependent molybdenum hydroxyla | 96.79 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 96.7 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 96.66 | |
| PLN02591 | 250 | tryptophan synthase | 96.65 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 96.6 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 96.58 | |
| PRK07051 | 80 | hypothetical protein; Validated | 96.54 | |
| PF02436 | 196 | PYC_OADA: Conserved carboxylase domain; InterPro: | 96.5 | |
| PRK05641 | 153 | putative acetyl-CoA carboxylase biotin carboxyl ca | 96.41 | |
| PRK07094 | 323 | biotin synthase; Provisional | 96.41 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 96.38 | |
| PF00364 | 74 | Biotin_lipoyl: Biotin-requiring enzyme; InterPro: | 96.38 | |
| TIGR02971 | 327 | heterocyst_DevB ABC exporter membrane fusion prote | 96.31 | |
| PF11379 | 355 | DUF3182: Protein of unknown function (DUF3182); In | 96.21 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 96.2 | |
| PF13375 | 101 | RnfC_N: RnfC Barrel sandwich hybrid domain | 96.19 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.18 | |
| PF12700 | 328 | HlyD_2: HlyD family secretion protein; PDB: 3LNN_B | 96.17 | |
| PRK06549 | 130 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 96.1 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 96.0 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 95.99 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 95.95 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 95.86 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 95.84 | |
| PF01597 | 122 | GCV_H: Glycine cleavage H-protein; InterPro: IPR00 | 95.82 | |
| PLN02983 | 274 | biotin carboxyl carrier protein of acetyl-CoA carb | 95.72 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.61 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 95.56 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 95.56 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 95.53 | |
| PF06973 | 188 | DUF1297: Domain of unknown function (DUF1297); Int | 95.53 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 95.51 | |
| cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carb | 95.5 | |
| cd06251 | 287 | M14_ASTE_ASPA_like_1 A functionally uncharacterize | 95.32 | |
| cd06252 | 316 | M14_ASTE_ASPA_like_2 A functionally uncharacterize | 95.26 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 95.15 | |
| cd06253 | 298 | M14_ASTE_ASPA_like_3 A functionally uncharacterize | 95.04 | |
| TIGR02994 | 325 | ectoine_eutE ectoine utilization protein EutE. Mem | 94.92 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 94.92 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 94.8 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 94.8 | |
| COG3608 | 331 | Predicted deacylase [General function prediction o | 94.8 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 94.69 | |
| KOG3895|consensus | 488 | 94.67 | ||
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 94.53 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.49 | |
| COG0509 | 131 | GcvH Glycine cleavage system H protein (lipoate-bi | 94.43 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 94.21 | |
| TIGR00531 | 156 | BCCP acetyl-CoA carboxylase, biotin carboxyl carri | 94.17 | |
| PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 94.17 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 94.14 | |
| PF06849 | 124 | DUF1246: Protein of unknown function (DUF1246); In | 94.04 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 94.04 | |
| cd06250 | 359 | M14_PaAOTO_like An uncharacterized subgroup of the | 94.03 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 93.9 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 93.86 | |
| cd06254 | 288 | M14_ASTE_ASPA_like_4 A functionally uncharacterize | 93.84 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 93.84 | |
| PRK15108 | 345 | biotin synthase; Provisional | 93.72 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 93.62 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 93.57 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 93.48 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 93.41 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 93.3 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 93.23 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 93.22 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 93.15 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 93.15 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 93.14 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 93.08 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 93.07 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.04 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 93.02 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 93.0 | |
| PRK06256 | 336 | biotin synthase; Validated | 92.97 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 92.92 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 92.87 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 92.84 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 92.83 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 92.75 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 92.73 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 92.71 | |
| PLN02226 | 463 | 2-oxoglutarate dehydrogenase E2 component | 92.53 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 92.5 | |
| PTZ00144 | 418 | dihydrolipoamide succinyltransferase; Provisional | 92.49 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 92.45 | |
| PLN02389 | 379 | biotin synthase | 92.42 | |
| PF13437 | 105 | HlyD_3: HlyD family secretion protein | 92.35 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 92.3 | |
| PF05896 | 257 | NQRA: Na(+)-translocating NADH-quinone reductase s | 92.26 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 92.18 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 92.15 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 92.1 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 92.05 | |
| COG1566 | 352 | EmrA Multidrug resistance efflux pump [Defense mec | 92.0 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 91.94 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 91.89 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 91.78 | |
| cd00210 | 124 | PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s | 91.74 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 91.71 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 91.63 | |
| cd00502 | 225 | DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat | 91.59 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 91.46 | |
| PRK09439 | 169 | PTS system glucose-specific transporter subunit; P | 91.43 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 91.24 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 91.23 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 91.19 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.14 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 90.98 | |
| COG2190 | 156 | NagE Phosphotransferase system IIA components [Car | 90.96 | |
| TIGR01936 | 447 | nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo | 90.94 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 90.89 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 90.87 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 90.84 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 90.74 | |
| PRK11556 | 415 | multidrug efflux system subunit MdtA; Provisional | 90.71 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 90.57 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 90.5 | |
| cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar | 90.42 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 90.39 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 90.35 | |
| PRK09439 | 169 | PTS system glucose-specific transporter subunit; P | 90.31 | |
| PRK07094 | 323 | biotin synthase; Provisional | 90.27 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 90.16 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 90.11 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 90.1 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 90.1 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 90.04 | |
| KOG3111|consensus | 224 | 89.98 | ||
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 89.98 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 89.94 | |
| PF00529 | 305 | HlyD: HlyD family secretion protein the correspond | 89.93 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 89.82 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 89.79 | |
| COG2190 | 156 | NagE Phosphotransferase system IIA components [Car | 89.78 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 89.74 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 89.68 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 89.62 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 89.56 | |
| KOG2799|consensus | 434 | 89.5 | ||
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 89.46 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 89.44 | |
| PRK05352 | 448 | Na(+)-translocating NADH-quinone reductase subunit | 89.34 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 89.29 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 89.28 | |
| PRK11578 | 370 | macrolide transporter subunit MacA; Provisional | 89.2 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 89.1 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 88.99 | |
| PRK05704 | 407 | dihydrolipoamide succinyltransferase; Validated | 88.93 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 88.93 | |
| cd06255 | 293 | M14_ASTE_ASPA_like_5 A functionally uncharacterize | 88.91 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 88.87 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 88.79 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 88.71 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 88.71 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.61 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 88.6 | |
| TIGR03794 | 421 | NHPM_micro_HlyD NHPM bacteriocin system secretion | 88.48 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 88.48 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 88.43 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 88.38 | |
| TIGR00998 | 334 | 8a0101 efflux pump membrane protein (multidrug res | 88.36 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 88.29 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 88.26 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 88.19 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 88.17 | |
| COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex | 88.16 | |
| PRK15452 | 443 | putative protease; Provisional | 88.08 | |
| PRK08508 | 279 | biotin synthase; Provisional | 88.07 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 87.94 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 87.93 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 87.91 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 87.79 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 87.77 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 87.76 | |
| PRK09578 | 385 | periplasmic multidrug efflux lipoprotein precursor | 87.74 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 87.74 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 87.71 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 87.62 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 87.57 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 87.52 | |
| PF09891 | 150 | DUF2118: Uncharacterized protein conserved in arch | 87.51 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 87.48 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.44 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 87.39 | |
| PRK09859 | 385 | multidrug efflux system protein MdtE; Provisional | 87.38 | |
| TIGR01347 | 403 | sucB 2-oxoglutarate dehydrogenase complex dihydrol | 87.33 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 87.26 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 87.26 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 87.08 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 86.92 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 86.91 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 86.81 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 86.78 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 86.76 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 86.75 | |
| PF00358 | 132 | PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph | 86.56 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 86.44 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 86.43 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 86.42 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 86.32 | |
| TIGR01995 | 610 | PTS-II-ABC-beta PTS system, beta-glucoside-specifi | 86.24 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 86.22 | |
| PRK10476 | 346 | multidrug resistance protein MdtN; Provisional | 86.1 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 86.1 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 86.08 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 86.05 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 86.0 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 85.81 | |
| PRK15136 | 390 | multidrug efflux system protein EmrA; Provisional | 85.74 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 85.72 | |
| PRK00112 | 366 | tgt queuine tRNA-ribosyltransferase; Provisional | 85.66 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 85.65 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 85.62 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 85.54 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 85.49 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 85.47 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 85.42 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 85.42 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 85.28 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 85.2 | |
| PF01702 | 238 | TGT: Queuine tRNA-ribosyltransferase; InterPro: IP | 85.19 | |
| KOG2157|consensus | 497 | 85.19 | ||
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 85.17 | |
| PRK09989 | 258 | hypothetical protein; Provisional | 85.16 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 85.14 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 85.12 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 84.86 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 84.85 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 84.73 | |
| PRK08508 | 279 | biotin synthase; Provisional | 84.69 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 84.65 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 84.64 | |
| PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisi | 84.59 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 84.58 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 84.58 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 84.57 | |
| TIGR01000 | 457 | bacteriocin_acc bacteriocin secretion accessory pr | 84.54 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 84.47 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 84.46 | |
| PRK15030 | 397 | multidrug efflux system transporter AcrA; Provisio | 84.41 | |
| PRK10255 | 648 | PTS system N-acetyl glucosamine specific transport | 84.41 | |
| PRK09997 | 258 | hydroxypyruvate isomerase; Provisional | 84.38 | |
| PF06898 | 385 | YqfD: Putative stage IV sporulation protein YqfD; | 84.32 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 84.28 | |
| PRK09824 | 627 | PTS system beta-glucoside-specific transporter sub | 84.23 | |
| TIGR01945 | 435 | rnfC electron transport complex, RnfABCDGE type, C | 84.23 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 84.16 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 84.12 | |
| COG1726 | 447 | NqrA Na+-transporting NADH:ubiquinone oxidoreducta | 84.11 | |
| PLN02428 | 349 | lipoic acid synthase | 83.96 | |
| KOG2156|consensus | 662 | 83.9 | ||
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 83.83 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 83.83 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 83.77 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 83.75 | |
| PF04952 | 292 | AstE_AspA: Succinylglutamate desuccinylase / Aspar | 83.65 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 83.57 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 83.53 | |
| PRK03598 | 331 | putative efflux pump membrane fusion protein; Prov | 83.52 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 83.51 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 83.47 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 83.46 | |
| TIGR01000 | 457 | bacteriocin_acc bacteriocin secretion accessory pr | 83.37 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 83.37 | |
| PRK04165 | 450 | acetyl-CoA decarbonylase/synthase complex subunit | 83.36 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 83.16 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 83.11 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 82.9 |
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-294 Score=2539.58 Aligned_cols=1136 Identities=50% Similarity=0.833 Sum_probs=1104.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
++++||||+||||||+|++|+|.|+|++||+||+.+|+.|.|+.+|||+|.|+....|+++|+++++||++|+++++|+|
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaI 84 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAI 84 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
||||||||||++||++|.++||.|+||+++.++.++||..+|.++.++|||+.|++..++.+.+++++|++++|||+|||
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiK 164 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIK 164 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
++.||||||||+|+++++|.++++++++|++++||++++|||+||++++|||||+++|.+||++||+|||||+||||||+
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKV 244 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKV 244 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
+|.+|++.|++++|++||+.|.++++.+||.|++|+||++|.+|+|||||||||+|+||++||++||||+|++||++|.|
T Consensus 245 VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 245 VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--cccccc-cCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 375 KSLT--ELGLCQ-EKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 375 ~~l~--~l~l~q-~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
..|+ +++++| ++|..+|+||||||++|||.++|.|++|+|+.|++++|.|||+|+++.+.|.+|+|||||||.|+.+
T Consensus 325 ~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~ 404 (1149)
T COG1038 325 ATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTC 404 (1149)
T ss_pred CccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEee
Confidence 9998 788875 5599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 452 HTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
||.|+++|++||.|+|.||+|+||+|||+||+++++||+|++| +|+|+|||++|+||++.+.+ ||++|+|+||+|++|
T Consensus 405 ~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g-~y~T~FId~tPeLf~~~~~~-Dr~tK~L~yl~dvtV 482 (1149)
T COG1038 405 WGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSG-RYTTSFIDTTPELFQFPKSQ-DRGTKLLTYLADVTV 482 (1149)
T ss_pred cCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccC-cceeeeccCCHHHhcccccc-chhHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999999999 99999999999999999987 999999999999999
Q ss_pred cCCCCCCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeec
Q psy15244 532 NGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRK 611 (1427)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (1427)
||++.... .++|.+..|..|.+. ++.+++.||||+|+++||
T Consensus 483 Ng~P~~~~-r~kp~~~~~~~~~~~-----------------------------~~~~~~~Gtkq~Ld~~GP--------- 523 (1149)
T COG1038 483 NGFPGLKS-RPKPAYDDAKLPVIN-----------------------------VSKPPPRGTKQILDELGP--------- 523 (1149)
T ss_pred cCCCccCC-CCCcccccccCCccc-----------------------------ccCCCCccHHHHHHhhCh---------
Confidence 99765444 447777777766432 234566999999999999
Q ss_pred cceeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHH
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVA 691 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~ 691 (1427)
++|++|||+++.+.+||||||||||||+|||+||.|+.+||+.++
T Consensus 524 -----------------------------------~~fa~wvr~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a 568 (1149)
T COG1038 524 -----------------------------------EGFARWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATA 568 (1149)
T ss_pred -----------------------------------HHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHH
Confidence 699999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEE
Q psy15244 692 NRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771 (1427)
Q Consensus 692 ~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~r 771 (1427)
+++++++|+||||||||||+||||.||||+||+.||+.+||++||||+||+|.|||++|||||+++||++|+++|||+||
T Consensus 569 ~~lp~lfSlE~WGGATfDVamRFL~EdPWeRL~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFR 648 (1149)
T COG1038 569 RALPQLFSLEMWGGATFDVAMRFLKEDPWERLERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFR 648 (1149)
T ss_pred HhhhhhhchhhhCCchHHHHHHHhccCHHHHHHHHHHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHH
Q psy15244 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAA 851 (1427)
Q Consensus 772 if~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~ 851 (1427)
|||+|||+++|+.+|+++++.|+ .+|++||||||+++|.+.+|+++||+++|++++++|+|+|.||||+|+|+|.++
T Consensus 649 iFDsLNwv~~M~vaidAV~e~gk---v~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA 725 (1149)
T COG1038 649 IFDSLNWVEQMRVAIDAVREAGK---VAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAA 725 (1149)
T ss_pred eehhhcchhhhhhHHHHHHhcCC---eEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHH
Q psy15244 852 KLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVC 931 (1427)
Q Consensus 852 ~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~ 931 (1427)
+.||++||+++ ++|||+|+|||.|.++|++++|++||||+||+++++|+|.||||++.+++++|.+..+++++|+
T Consensus 726 ~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~A~~smsG~TSQPsl~si~~al~~~~r~~~ld~---- 800 (1149)
T COG1038 726 YRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVEAGVDIVDVAMASMSGLTSQPSLNSIVAALAGTERDTGLDI---- 800 (1149)
T ss_pred HHHHHHHHHhc-CCceEEeccCCCccHHHHHHHHHHcCCchhhhhhhhccCCCCCccHHHHHHHhcCCCCCCCCCH----
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCC
Q psy15244 932 DYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011 (1427)
Q Consensus 932 ~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~g 1011 (1427)
..+..++.||+.+|.+|.||+ ++++|++++||.|+|||||||||++|++++|
T Consensus 801 ---------------------------~~~~~i~~YWe~vR~~Ya~FE-s~lkgp~~eVY~HEmPGGQ~tNLk~QA~slG 852 (1149)
T COG1038 801 ---------------------------EAVRELSFYWEAVRKLYAPFE-SGLKGPATEVYLHEMPGGQLTNLKQQARSLG 852 (1149)
T ss_pred ---------------------------HHHHHHHHHHHHHHHhhhhhh-cCCCCCCcceeeeecCCcccccHHHHHHhcc
Confidence 778889999999999999999 9999999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHh
Q psy15244 1012 L--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKK 1089 (1427)
Q Consensus 1012 l--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~ 1089 (1427)
| ||+||+++|++||++||||+|||||||||||||+|||+|+||.+|+++++.+++||+||++||+|.+||||||||++
T Consensus 853 Lg~Rw~evk~~Y~~vN~mfGdivKVTPSSKVVGDmAl~MV~n~Lt~~dv~~~~~~l~fPdSVv~ff~G~lGqP~gGfPe~ 932 (1149)
T COG1038 853 LGDRWEEVKEAYREVNRMFGDIVKVTPSSKVVGDLALFMVQNDLTEEDVENDANDLDFPDSVVSFFRGELGQPPGGFPEP 932 (1149)
T ss_pred chhhHHHHHHHHHHHHHHhCCceEecccchhHHHHHHHHHhcCCCHHHHhcccccCCCcHHHHHHhhcccCCCCCCCCHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcc
Q psy15244 1090 LQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIM 1169 (1427)
Q Consensus 1090 ~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~ 1169 (1427)
||+++|||++++|+|||.+ ++|.||++. ++ ++.+++| .+.+
T Consensus 933 Lqk~vLkg~~p~t~Rpg~~-----------l~~~d~~a~-----r~---~l~~~~~--------------------~~~~ 973 (1149)
T COG1038 933 LQKKVLKGREPLTDRPGEL-----------LEPADFEAI-----RK---ELEEKLG--------------------REVS 973 (1149)
T ss_pred HHHHHhcCCCccccCcccc-----------CCccchHHH-----HH---HHHHHhC--------------------CCch
Confidence 9999999999999999999 999999988 88 8888988 4688
Q ss_pred ccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCccee
Q psy15244 1170 ACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERT 1249 (1427)
Q Consensus 1170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~ 1249 (1427)
++| ++||+|||+||++|.+++++|||++.|||+.||+||++|+++.+++++||++.|+
T Consensus 974 d~d-------~~sy~lyPkvf~dy~~~~~~yGd~S~L~t~~ff~gm~~gEe~~v~ie~GktLii~--------------- 1031 (1149)
T COG1038 974 DQD-------VASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEEIEVEIEKGKTLIIK--------------- 1031 (1149)
T ss_pred hHH-------HHHHHhcchhHHHHHHHHHhcCCccccCcchhhccCCCCceEEEEecCCcEEEEE---------------
Confidence 999 9999999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEE
Q psy15244 1250 VFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFF 1329 (1427)
Q Consensus 1250 ~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~ 1329 (1427)
+.++++++++ |+|+++|
T Consensus 1032 --------------------------------------------------------------l~aige~d~~-G~r~v~f 1048 (1149)
T COG1038 1032 --------------------------------------------------------------LQAIGEPDEK-GMRTVYF 1048 (1149)
T ss_pred --------------------------------------------------------------ecccCCCCcC-CcEEEEE
Confidence 6778888888 9999999
Q ss_pred EECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEE
Q psy15244 1330 LYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVK 1406 (1427)
Q Consensus 1330 elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~ 1406 (1427)
++|||+|.| |.+.......++||+++|++||+|||||+|++|.|++||.|++||+|+++||||||+.|.||.+|+|+
T Consensus 1049 elNGq~R~i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~ 1128 (1149)
T COG1038 1049 ELNGQPREIKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVK 1128 (1149)
T ss_pred EeCCceeeeeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEe
Confidence 999999988 77777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeCCCCEEEEEe
Q psy15244 1407 EIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1407 ~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+++|+.||+|+.||+|++++
T Consensus 1129 ~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1129 EVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred EEEecCCCccccCceEEEcc
Confidence 99999999999999999875
|
|
| >KOG0369|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-278 Score=2350.34 Aligned_cols=1140 Identities=54% Similarity=0.933 Sum_probs=1098.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
++||||+|||||++|++|+|.|+|+++|+||+..|+.+.|+.+|||+|.|+.+.+|+.+|+.+++|+++|+++++|+|||
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
|||||||+.+||++|.++|+.|+|||+++++.++||..+|.++.++|||+.||+.+++++.+|+.+|++++|+|+|+|++
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
+||||||||+|++.++++++|+++.+|+.++||++.++||+||+.++||+||+++|++||++|++|||||+||||||++|
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~ 376 (1427)
++|++.|++++|++|...|.++++.+||.+++|+||++|..|++||||||||+|+||++||.+||+||+++||++|.|..
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCH
Q psy15244 377 LTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATY 456 (1427)
Q Consensus 377 l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~ 456 (1427)
|++++++|+.|..+|+|||||+++|||.++|.|++|+|+.|++.+|.|||+|+.+++.|+.|+|+|||++.|++++|.|.
T Consensus 353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~ 432 (1176)
T KOG0369|consen 353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY 432 (1176)
T ss_pred cccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhhcCCCC
Q psy15244 457 KSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMT 536 (1427)
Q Consensus 457 ~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1427)
+-+.+||.|+|.||+||||+||||||.++|.||.|+.| .++|.|||+||+||++.+.+ +|+||||+||+++.||||++
T Consensus 433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g-~~~T~FIDe~PeLFq~~psq-NRAQKLL~Ylg~v~VNGpst 510 (1176)
T KOG0369|consen 433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEG-TVDTTFIDETPELFQLKPSQ-NRAQKLLHYLGDVAVNGPST 510 (1176)
T ss_pred HHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeee-eeeeEEecCChHHhccccch-hHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999 99999999999999999988 99999999999999999999
Q ss_pred CCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeeccceeE
Q psy15244 537 PLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVL 616 (1427)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1427)
+++++.+|....|++|.++.. ..+|.|||++|.+.||
T Consensus 511 p~~~~l~p~~~~p~vP~~~~~-----------------------------~~pp~G~R~vLl~~GP-------------- 547 (1176)
T KOG0369|consen 511 PGQTGLPPLKSSPVVPHLPDG-----------------------------TGPPKGWRDVLLEEGP-------------- 547 (1176)
T ss_pred CCcCCCCcccCCCCCCcccCC-----------------------------CCCCccHHHHHHhhCH--------------
Confidence 999999999999999977642 1367999999999999
Q ss_pred eecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCC
Q psy15244 617 LTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNN 696 (1427)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G 696 (1427)
++|++.+|++++..|+||||||+|||+++||+||.|+.+|+++.++.++|
T Consensus 548 ------------------------------~~FAk~VRn~~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~ 597 (1176)
T KOG0369|consen 548 ------------------------------EEFAKAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAG 597 (1176)
T ss_pred ------------------------------HHHHHHHhcCCCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhh
Confidence 58888888888888889999999999999999999999999999999999
Q ss_pred ccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccC
Q psy15244 697 LYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776 (1427)
Q Consensus 697 ~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~ 776 (1427)
++|+|+|||||||++||||+||||+||++||+.+||++||||+||+|+|||++||||++.+|++.|+++|+|+||+||++
T Consensus 598 lfslE~WGGATFDVamRFLhEcPWeRL~~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsL 677 (1176)
T KOG0369|consen 598 LFSLENWGGATFDVAMRFLHECPWERLRELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSL 677 (1176)
T ss_pred hhhhhhcCCchhhHHHHHHhcChHHHHHHHHHhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHH
Q psy15244 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIG 856 (1427)
Q Consensus 777 nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~ 856 (1427)
|++.||...+++++++|. .|+++||||||+++|.+++|+++||++++++++++|.|+++||||+|+|+|.++.-||.
T Consensus 678 N~lpnl~lGmeAagkAGG---VVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~ 754 (1176)
T KOG0369|consen 678 NYLPNLLLGMEAAGKAGG---VVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIG 754 (1176)
T ss_pred hhhhhhhhhHhhhhccCC---eEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q psy15244 857 SFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSY 936 (1427)
Q Consensus 857 ~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~ 936 (1427)
+||+++|++|||+|+||+.|.|+|.+++|++||||+||+++++|+|.|+||++..+++.|+++..||++++
T Consensus 755 alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~--------- 825 (1176)
T KOG0369|consen 755 ALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNL--------- 825 (1176)
T ss_pred HHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCceeeeecccccccccCCchhhhhhhccCCcccCCCch---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCC-CCCCcCcccEEEecCCCccHHHHHHHHHHCCC--C
Q psy15244 937 WRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--D 1013 (1427)
Q Consensus 937 v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~-~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~ 1013 (1427)
+.+..++.||+..|..|.||+| ..+++.+++||.|+||||||+||++|+.++|| +
T Consensus 826 ----------------------~~v~eysaYWe~~R~LYapFe~tttmksgn~dVY~hEIPGGQyTNL~FQA~slGLG~q 883 (1176)
T KOG0369|consen 826 ----------------------EHVREYSAYWEQMRLLYAPFECTTTMKSGNSDVYQHEIPGGQYTNLQFQAFSLGLGEQ 883 (1176)
T ss_pred ----------------------HHHHHHHHHHHHHhhhhchhhhcccccCCCcchhhccCCCcceeeeeeehhhccchhh
Confidence 7788899999999999999997 48999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHH
Q psy15244 1014 FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEK 1093 (1427)
Q Consensus 1014 ~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~ 1093 (1427)
|+|++++|.+.|.+|||+||||||||||||+|+|||+|+|+.+++.+++++++||+||++||+|++|+|||||||+++.+
T Consensus 884 ~~evKkaYrEAN~lLGDiiKVTPsSKvVGDLAQFMVqN~Lt~~~~~~rA~~LsFP~SVvdf~qG~iGqP~gGFPEPlRs~ 963 (1176)
T KOG0369|consen 884 FAEVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLTRDDVERRAEELSFPKSVVDFFQGLIGQPYGGFPEPLRSK 963 (1176)
T ss_pred HHHHHHHHHHHHHHhhCeeeeccchhhHHHHHHHHHhcCCCHHHHHHHhhhcCCcHHHHHHHhcccCCCCCCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcccccc
Q psy15244 1094 VLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDC 1173 (1427)
Q Consensus 1094 ~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~ 1173 (1427)
||++.+.+++|||.. ++|.||+++ ++ +|.+++| .+++||
T Consensus 964 VLk~~~r~~gRPG~~-----------l~p~Dldai-----~k---eL~e~~~---------------------~~s~~D- 1002 (1176)
T KOG0369|consen 964 VLKGKPRLTGRPGAE-----------LPPLDLDAI-----RK---ELQERHG---------------------DVSECD- 1002 (1176)
T ss_pred HhcCCCccCCCCCCc-----------CCccCHHHH-----HH---HHHHhcC---------------------CCcHHH-
Confidence 999999999999999 999999999 88 8999998 389999
Q ss_pred ccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEE
Q psy15244 1174 RENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFL 1253 (1427)
Q Consensus 1174 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~ 1253 (1427)
++||+|||.||++|.+||++|||+++|||+.|+.|.+++||+.|+++.||+++|+.+-.+-.++.+++|+|||+
T Consensus 1003 ------v~sy~myP~Vf~~f~~fr~~yG~ld~lpTr~FL~~pe~~EE~~Veie~GKTL~ik~lAvg~~~~~~GqReVfFe 1076 (1176)
T KOG0369|consen 1003 ------VASYAMYPRVFEDFQKFRETYGPLDKLPTRLFLTGPEIAEEFEVEIEQGKTLIIKLLAVGDLLKKTGQREVFFE 1076 (1176)
T ss_pred ------hhhhhhccHHHHHHHHHHHhcCCccccchhhhccCCCcCceEEEEeccCcEEEEEeeecccccccCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999994444434444444444444
Q ss_pred eccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECC
Q psy15244 1254 YNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1333 (1427)
Q Consensus 1254 ~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG 1333 (1427)
||||+|++.+.
T Consensus 1077 LNGqlR~i~v~--------------------------------------------------------------------- 1087 (1176)
T KOG0369|consen 1077 LNGQLRSIRVA--------------------------------------------------------------------- 1087 (1176)
T ss_pred ecCceeeEEee---------------------------------------------------------------------
Confidence 44444444444
Q ss_pred EEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCC
Q psy15244 1334 QLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG 1413 (1427)
Q Consensus 1334 ~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G 1413 (1427)
|+.+......+++|++++.++|+|||||+|+++.|++|+.|+|||+|+++.|||||+.|.||.+|+|+++++..|
T Consensus 1088 -----Dk~a~ke~v~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g 1162 (1176)
T KOG0369|consen 1088 -----DKEAAKEIVTRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQG 1162 (1176)
T ss_pred -----chhhhhhhcccccCCCCCcccccCCCCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCC
Confidence 444445556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCEEEEEe
Q psy15244 1414 GQVAQNDLVVVLD 1426 (1427)
Q Consensus 1414 ~~V~~g~~L~~i~ 1426 (1427)
+.++.||++++||
T Consensus 1163 ~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1163 TKVEGGDLIVELE 1175 (1176)
T ss_pred CcccccceEEEcc
Confidence 9999999999987
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-244 Score=2346.60 Aligned_cols=1133 Identities=51% Similarity=0.846 Sum_probs=1071.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCC--CCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG--MPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~--~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
||||+||||||+|++|+|+++|+++|++|+++|..++|+.+||++|+++.. ..+..+|+|++.|+++|+++++|+|||
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999999999999999999999999999754 356789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
||||+||++.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||+
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998755678999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
.|+||+||++|++.+||.++++.+.+++..+|+++.++||+||++++|++|++++|++|+++++++|+|++||+|+++++
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~ 376 (1427)
.+|++.++++.+++|++.|.++++++||.|+++|||++|++|++||||||||+|++|++||++||+|++++|+++|.|.+
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~ 320 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGAS 320 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCCC
Confidence 99998899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred Cc--cccc-cccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 377 LT--ELGL-CQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 377 l~--~l~l-~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
|+ ++++ .|+.+..+||||||||++|||.++|.|++|+|+.|++|+++|||+|++..+.|+.|+|+||||++|+++||
T Consensus 321 L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~ 400 (1143)
T TIGR01235 321 LPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWA 400 (1143)
T ss_pred CCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeC
Confidence 98 5554 58889999999999999999999999999999999999999999998778899999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhhcC
Q psy15244 454 ATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNG 533 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1427)
+||++|++||.|||++++|+||+|||+||++||+||+|++| +++|+||++||+||++.... +|++|||+||+|++|||
T Consensus 401 ~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~-~~~t~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~vn~ 478 (1143)
T TIGR01235 401 STPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDG-SYDTRFIDTTPELFQFVKSQ-DRATKLLTYLADVTVNG 478 (1143)
T ss_pred CCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCC-CccchhhhcChhhcCCCccc-chhhhHHhHhheeEecC
Confidence 99999999999999999999999999999999999999999 99999999999999998877 99999999999999999
Q ss_pred CCCCCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeeccc
Q psy15244 534 PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLK 613 (1427)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1427)
++.... ..++....|.+|.+... ..|+|.||||+|+++||
T Consensus 479 ~~~~~~-~~~~~~~~~~~~~~~~~----------------------------~~~~~~g~~~~~~~~g~----------- 518 (1143)
T TIGR01235 479 HPEAKD-KLKPLENAPRVVVLYAD----------------------------QNPVPRGTKQILDEKGP----------- 518 (1143)
T ss_pred CCCcCC-CCCCCCCCCCCCCCCcc----------------------------cCCCCCChHHHHHhhCH-----------
Confidence 855332 22345555666643210 13678999999999999
Q ss_pred eeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhh
Q psy15244 614 HVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANR 693 (1427)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~ 693 (1427)
++|++|||++++|+||||||||||||++||||||+||++||+.+++.
T Consensus 519 ---------------------------------~~~~~~~~~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~ 565 (1143)
T TIGR01235 519 ---------------------------------EGFAEWVRNQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHA 565 (1143)
T ss_pred ---------------------------------HHHHHHHHhcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHh
Confidence 59999999999999999999999999999999999999999999997
Q ss_pred cCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEe
Q psy15244 694 FNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773 (1427)
Q Consensus 694 ~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif 773 (1427)
++|++|+|+|||||||+|+|||+||||+||+.||+.+||++||||+||+|+|||++||||++++|++.++++|||+||||
T Consensus 566 ~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~Gidifrif 645 (1143)
T TIGR01235 566 LPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVF 645 (1143)
T ss_pred cCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHH
Q psy15244 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKL 853 (1427)
Q Consensus 774 ~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~ 853 (1427)
|++||++||+.++++++++|+ +++++||||+|+.+|...+|+++||+++++++.++|+|+|+||||+|+++|.++++
T Consensus 646 D~lN~~~n~~~~~~~~~~~g~---~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~ 722 (1143)
T TIGR01235 646 DSLNWVENMRVGMDAVAEAGK---VVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKL 722 (1143)
T ss_pred ccCcCHHHHHHHHHHHHHcCC---EEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHH
Confidence 999999999999999999999 99999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHH
Q psy15244 854 LIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDY 933 (1427)
Q Consensus 854 lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l 933 (1427)
||++||+++ ++|||+|||||+|+|+||+++|++||||+||+|++||||+||||++|+++++|+.+++++++|+
T Consensus 723 Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl------ 795 (1143)
T TIGR01235 723 LIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNV------ 795 (1143)
T ss_pred HHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcCH------
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC-
Q psy15244 934 SSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL- 1012 (1427)
Q Consensus 934 ~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl- 1012 (1427)
..+...++||+++|.+|.+|+ +.+.+++.+||.|||||||||||++||+++|+
T Consensus 796 -------------------------~~l~~is~~~~~vr~~y~~~~-~~~~~~~~~v~~~~~PGG~~snl~~q~~~~g~~ 849 (1143)
T TIGR01235 796 -------------------------AWIRELSAYWEAVRNLYAAFE-SDLKGPASEVYLHEMPGGQYTNLQFQARSLGLG 849 (1143)
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhcCC-CCCcCCCcCeEEecCCCcccchHHHHHHHCCcH
Confidence 667778888999999999999 89999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHH
Q psy15244 1013 -DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQ 1091 (1427)
Q Consensus 1013 -~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~ 1091 (1427)
+|+||+++|++||++||||||||||||||||||+|||+|+|+.++++++++.++||+||++|++|+||+||+|||++|+
T Consensus 850 ~~~~~v~~~~~~v~~~lG~~~~VTP~Sq~vg~~A~~~v~~~l~~~~v~~~~~~~~~~~~v~~~~~G~~G~pp~~~~~~~~ 929 (1143)
T TIGR01235 850 DRWHEVKQAYREANQMFGDIVKVTPSSKVVGDMALFMVSNDLTVDDVVEPAEELSFPDSVVEFLKGDIGQPHGGFPEPLQ 929 (1143)
T ss_pred hhHHHHHHHHHHHHHHcCCCceECChhHhHHHHHHHHHHhccChhhhccccccccCCHHHHHHhCcCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcccc
Q psy15244 1092 EKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMAC 1171 (1427)
Q Consensus 1092 ~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~ 1171 (1427)
++||+|++++++||++. ++|.||+++ ++ ++.+++| .++++|
T Consensus 930 ~~vl~~~~~~~~rp~~~-----------l~p~~~~~~-----~~---~~~~~~~--------------------~~~~~e 970 (1143)
T TIGR01235 930 KKVLKGEKPITVRPGSL-----------LEPADLDAI-----RK---DLQEKHE--------------------REVSDF 970 (1143)
T ss_pred HHHhCCCCCCcCCcccc-----------CCcccHHHH-----HH---HHHHHhc--------------------CCCCHH
Confidence 99999999999999999 999999888 87 7777777 457899
Q ss_pred ccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEE
Q psy15244 1172 DCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVF 1251 (1427)
Q Consensus 1172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~ 1251 (1427)
| +|||+|||+||.+|++++++||+++.|||+.||+|+++|+++.+++++||++.|+
T Consensus 971 d-------~~~y~~~p~v~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~e~~v~~~~g~~~~i~----------------- 1026 (1143)
T TIGR01235 971 D-------VASYAMYPKVFTDFAKARDTYGPVSVLPTPAFFYGLADGEEIEVDIEKGKTLIIK----------------- 1026 (1143)
T ss_pred H-------HHHHHcCcHHHHHHHHHHHhcCCccccccccccccCCCCcEEEEEecCCcEEEEE-----------------
Confidence 9 9999999999999999999999999999999999999999999999999999998
Q ss_pred EEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEE
Q psy15244 1252 FLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLY 1331 (1427)
Q Consensus 1252 ~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~el 1331 (1427)
+.++++++.. |.|+++|++
T Consensus 1027 ------------------------------------------------------------~~~~~~~~~~-g~r~v~fEl 1045 (1143)
T TIGR01235 1027 ------------------------------------------------------------LQAVGATDSQ-GEREVFFEL 1045 (1143)
T ss_pred ------------------------------------------------------------eccccccCCC-CcEEEEEEE
Confidence 4444444444 667777777
Q ss_pred CCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEE
Q psy15244 1332 NGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEI 1408 (1427)
Q Consensus 1332 nG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i 1408 (1427)
||+.++| |.+.......++++++.++.+|.|||||+|++|.|++||.|++||+|++|||||||++|.||.+|+|+++
T Consensus 1046 NGq~reV~V~D~s~~~~~~~~~KAd~~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i 1125 (1143)
T TIGR01235 1046 NGQPRRIKVPDRSHKAEAAVRRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEV 1125 (1143)
T ss_pred CCeEEEEEecCcccccccccccccccccCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEE
Confidence 7777665 4333333345667888899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCeeCCCCEEEEEe
Q psy15244 1409 FVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1409 ~v~~G~~V~~g~~L~~i~ 1426 (1427)
++++|+.|+.||+|++|+
T Consensus 1126 ~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1126 LVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EeCCCCEECCCCEEEEeC
Confidence 999999999999999985
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-232 Score=2250.95 Aligned_cols=1135 Identities=50% Similarity=0.846 Sum_probs=1076.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+||+||||+|||+||++++|+|+++|++++++|+++|..++|..+||++|+++.+..+..+|+|++.|+++|+++++|+|
T Consensus 3 ~~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI 82 (1146)
T PRK12999 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAI 82 (1146)
T ss_pred CcccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999999999999999999999999999999998655678899999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
||||||++|++.++++|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|||
T Consensus 83 ~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVK 162 (1146)
T PRK12999 83 HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLK 162 (1146)
T ss_pred EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987436899999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++..+|+++.+++|+||++++|+++++++|++|+++++++|+|++|++||++
T Consensus 163 P~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ 242 (1146)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1146)
T ss_pred ECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccE
Confidence 99999999999999999999999999999888899999999999998899999999999999999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
++.+|++.++++.+++|++.+.++++++||.|++|+||++|++|++||||||||+|++|+++|++||+|++++++++++|
T Consensus 243 ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G 322 (1146)
T PRK12999 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEG 322 (1146)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCC
Confidence 99999988999999999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred CCCccccc---cccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 375 KSLTELGL---CQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 375 ~~l~~l~l---~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
.+++.+.+ .|+.+..+||||+|||++|||.++|.|++|+|+.+++|+++++|+|++..+.|..|+++|||+++|||+
T Consensus 323 ~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~ 402 (1146)
T PRK12999 323 ATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTA 402 (1146)
T ss_pred CCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEE
Confidence 99875432 577888899999999999999999999999999999999999999987777999999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 452 HTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
||+|+++|+++|.+||++++|+|++|||+||++||+||+|++| +++|+||++||+||.+.... +|++|||.||++++|
T Consensus 403 ~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~-~~~t~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 480 (1146)
T PRK12999 403 WGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAG-DYTTSFIDETPELFDFPKRR-DRGTKLLTYIADVTV 480 (1146)
T ss_pred EcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCC-CccchhhhcChhhhhCCccc-ccHHHHHhhhheeEE
Confidence 9999999999999999999999999999999999999999999 99999999999999998876 999999999999999
Q ss_pred cCCCCCCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeec
Q psy15244 532 NGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRK 611 (1427)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (1427)
||+++... .++....|.+|..+. ..++|.||||+|+++||
T Consensus 481 ~~~~~~~~--~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~g~--------- 520 (1146)
T PRK12999 481 NGFPGVKK--KPPVFPDPRLPKVDL-----------------------------SAPPPAGTKQILDELGP--------- 520 (1146)
T ss_pred eCCCCccC--CCCCCCCCCCCCCCC-----------------------------CCCCCCchHHHhhhcCH---------
Confidence 99865433 345666677765321 13667999999999999
Q ss_pred cceeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHH
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVA 691 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~ 691 (1427)
++|++|||++++|+|+||||||||||++++||+++||++||+.|+
T Consensus 521 -----------------------------------~~~~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~ 565 (1146)
T PRK12999 521 -----------------------------------EGFADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATA 565 (1146)
T ss_pred -----------------------------------HHHHHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEE
Q psy15244 692 NRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771 (1427)
Q Consensus 692 ~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~r 771 (1427)
+++.|+++||+|||||||+|+||++||||+||+.+|+.+||+++|||+||+|+|||++||||+++.||+.|+++|+|+||
T Consensus 566 ~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~r 645 (1146)
T PRK12999 566 RLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFR 645 (1146)
T ss_pred HHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEE
Confidence 95559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHH
Q psy15244 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAA 851 (1427)
Q Consensus 772 if~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~ 851 (1427)
|||++||++||+.++++++++|. .+++++||+||+++|..++|+++||++++++++++|+|+|+||||+|+++|.++
T Consensus 646 ifd~lnd~~~~~~~i~~vk~~g~---~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~ 722 (1146)
T PRK12999 646 IFDSLNWVENMRVAIDAVRETGK---IAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAA 722 (1146)
T ss_pred EeccCChHHHHHHHHHHHHHcCC---eEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHH
Confidence 99999999999999999999999 999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHH
Q psy15244 852 KLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVC 931 (1427)
Q Consensus 852 ~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~ 931 (1427)
++||++||+++ ++|||+|+|||+|||+||+++|++||||+||+|++|||||||||+||+++++|+.+++++++|+
T Consensus 723 ~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~~t~idl---- 797 (1146)
T PRK12999 723 YELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTERDTGLDL---- 797 (1146)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCCCCCcCH----
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCC
Q psy15244 932 DYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFG 1011 (1427)
Q Consensus 932 ~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~g 1011 (1427)
..+...++||+++|.+|.+|+ +.+.+.+.+||.|||||||||||++||+++|
T Consensus 798 ---------------------------~~l~~~s~~~~~~r~~y~~~~-~~~~~~~~~v~~~~~PGG~~snl~~q~~~~g 849 (1146)
T PRK12999 798 ---------------------------DAIRKLSPYWEAVRPYYAPFE-SGLKSPTTEVYLHEMPGGQYSNLKQQARALG 849 (1146)
T ss_pred ---------------------------HHHHHHHHHHHHHHhHhhccC-CCCCCCCcCeEEecCCCcccchHHHHHHHCC
Confidence 667777888999999999999 9999999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHh
Q psy15244 1012 L--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKK 1089 (1427)
Q Consensus 1012 l--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~ 1089 (1427)
+ +|+||+++|++||++||||||||||||||||||+|||+|+|+.+++.++++.++||+||++|++|+||+||+|||++
T Consensus 850 ~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~G~~~~~~~~~ 929 (1146)
T PRK12999 850 LGDRFEEVKEMYAAVNRMFGDIVKVTPSSKVVGDMALFMVQNGLTPEDVYEPGEDLDFPDSVVSFLKGELGQPPGGFPEP 929 (1146)
T ss_pred hHhHHHHHHHHHHHHHHHcCCCceeCccchhhHHHHHHHHhhccchhhhhccCceeeCCHHHHHHhCcCCCCCCCCCCHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcc
Q psy15244 1090 LQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIM 1169 (1427)
Q Consensus 1090 ~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~ 1169 (1427)
|+++||+|++++++||++. ++|.||+++ ++ ++.+++| .+.+
T Consensus 930 ~~~~~l~~~~~~~~rp~~~-----------~~~~d~~~~-----~~---~~~~~~~--------------------~~~~ 970 (1146)
T PRK12999 930 LQKKVLKGEEPITVRPGEL-----------LEPVDFEAE-----RA---ELEEKLG--------------------REVT 970 (1146)
T ss_pred HHHHHhCCCCCCcCChhhh-----------CCcccHHHH-----HH---HHHHHhc--------------------CCCC
Confidence 9999999999999999999 899899888 88 7777777 4578
Q ss_pred ccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCccee
Q psy15244 1170 ACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERT 1249 (1427)
Q Consensus 1170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~ 1249 (1427)
+|| +|||+|||++|.+|++++++|||++.|||+.||+|+++|+++.+++++||++.|+
T Consensus 971 ~~~-------~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~e~~~~~~~~gk~~~i~--------------- 1028 (1146)
T PRK12999 971 DRD-------VLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEEIEVEIEPGKTLIIK--------------- 1028 (1146)
T ss_pred HHH-------HHHHHhCcHHHHHHHHHHHhcCCcccCCCchhhcccCcCceEEeecCCCceeEEE---------------
Confidence 899 9999999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEE
Q psy15244 1250 VFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFF 1329 (1427)
Q Consensus 1250 ~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~ 1329 (1427)
+.++++++.+ |+|+++|
T Consensus 1029 --------------------------------------------------------------~~~~~~~~~~-g~~~~~~ 1045 (1146)
T PRK12999 1029 --------------------------------------------------------------LEAIGEPDED-GMRTVYF 1045 (1146)
T ss_pred --------------------------------------------------------------eecccCcccC-CcEEEEE
Confidence 4555655555 8888888
Q ss_pred EECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEE
Q psy15244 1330 LYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVK 1406 (1427)
Q Consensus 1330 elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~ 1406 (1427)
++||+.|+| |.+.......++++++.++.+|.|||||+|++|+|++||.|++||+|+++||||||++|.||.+|+|+
T Consensus 1046 ~vnG~~~~V~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~ 1125 (1146)
T PRK12999 1046 ELNGQPREVQVRDRSVKSTVAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVK 1125 (1146)
T ss_pred EECCEEEEEEEecCccccccccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEE
Confidence 888888887 44333333445677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeCCCCEEEEEe
Q psy15244 1407 EIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1407 ~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++++++|+.|+.||+|++|+
T Consensus 1126 ~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1126 RVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred EEEeCCCCEECCCCEEEEEc
Confidence 99999999999999999986
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-136 Score=1249.44 Aligned_cols=586 Identities=30% Similarity=0.536 Sum_probs=538.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|+|+||||||||||+++|||+++|+++||+.+|+ +|+++||+|||||||+|+||++|||||||+.+|+.+||+++
T Consensus 1 ~~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~--~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~l 78 (596)
T PRK14042 1 MSKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDD--VGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQL 78 (596)
T ss_pred CCceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHh--cCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCce
Confidence 4789999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
|||+||+|++||++||||++++|++.|+++|+|+|||||++||++||+.++++++++|+ +++++||||+ +|
T Consensus 79 qmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~---~~~~~i~yt~---sp--- 149 (596)
T PRK14042 79 SMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKK---HAQGAICYTT---SP--- 149 (596)
T ss_pred EEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCC---EEEEEEEecC---CC---
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999995 77
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.|+++||+++++++.++|+|+|+||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|++||||+||+
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 89999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
|++|||+|+|||++|+++++|+.+|+++++|+ ..+...++||.++|+.|
T Consensus 229 ai~glGg~tGn~~tE~lv~~L~~~g~~tgidl-------------------------------~~l~~~~~~~~~vr~~y 277 (596)
T PRK14042 229 AISSFSGGASHPPTEALVAALTDTPYDTELDL-------------------------------NILLEIDDYFKAVRKKY 277 (596)
T ss_pred ccccccCCCCcHhHHHHHHHHHhcCCCCCCCH-------------------------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 66777888999999999
Q ss_pred CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCC
Q psy15244 976 APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKL 1053 (1427)
Q Consensus 976 ~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~ 1053 (1427)
.+|+ +.+.+.++++|.|||||||+|||++||+++|+ +|+||+++|++||++||||||||||||||||||+|||..|.
T Consensus 278 ~~~~-~~~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~~ev~~e~~~v~~~lG~~~~VTP~Sqivg~qA~~Nvl~g~ 356 (596)
T PRK14042 278 SQFE-SEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRKDLGYPPLVTPTSQVVGTQAVINVLTGE 356 (596)
T ss_pred hhcC-CccccCCcceeecCCCcchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeECCcCcEEEEEehhhccChh
Confidence 9998 89999999999999999999999999999999 99999999999999999999999999999999999887665
Q ss_pred ChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhh
Q psy15244 1054 SYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKA 1133 (1427)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~ 1133 (1427)
+|+ +||+||++|++|+||+||+|||++|+++||++++++++||++. ++| |++++
T Consensus 357 r~~---------~~~~~v~~~~~G~~G~pp~~~~~~l~~~il~~~~~~~~rp~~~-----------~~~-~~~~~----- 410 (596)
T PRK14042 357 RYK---------TITNEVKLYCQGKYGTPPGKISSALRKKAIGRTEVIEVRPGDL-----------LPN-ELDQL----- 410 (596)
T ss_pred hee---------ECCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCcccc-----------CCc-CHHHH-----
Confidence 553 7999999999999999999999999999999999999999999 664 55554
Q ss_pred HHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccC
Q psy15244 1134 TKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLN 1213 (1427)
Q Consensus 1134 ~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~ 1213 (1427)
++ ++.+. ..++|| +|+|+|||+++.+|+++|++ ++.+|+..|++
T Consensus 411 ~~---~~~~~-----------------------~~~~ed-------~l~y~l~p~v~~~f~~~~~~---~~~~~~~~~~~ 454 (596)
T PRK14042 411 QN---EISDL-----------------------ALSDED-------VLLYAMFPEIGRQFLEQRKN---NQLIPEPLLTQ 454 (596)
T ss_pred HH---HHhhc-----------------------cCCHHH-------HHHHHhCcHHHHHHHHHHhc---cccCCcccccc
Confidence 44 22211 267789 99999999999999999988 56889999999
Q ss_pred CCCCCc----EEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceec
Q psy15244 1214 GPNIGE----EFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFL 1289 (1427)
Q Consensus 1214 g~~~g~----~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v 1289 (1427)
++++|+ ++.|+. +||++.|+
T Consensus 455 ~~~~~~~~~~e~~v~~-~Gk~~~Ik------------------------------------------------------- 478 (596)
T PRK14042 455 SSAPDNSVMSEFDIIL-HGESYHVK------------------------------------------------------- 478 (596)
T ss_pred ccccCCCCceEEEEEE-CCEEEEEE-------------------------------------------------------
Confidence 988777 889985 59999998
Q ss_pred cCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCe
Q psy15244 1290 NGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPG 1366 (1427)
Q Consensus 1290 ~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G 1366 (1427)
+.++++ + ..|.|+++|++||+.+.+ |.+........++++++++++|+|||||
T Consensus 479 ----------------------l~~~g~-~-~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G 534 (596)
T PRK14042 479 ----------------------VAGYGM-I-EHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPG 534 (596)
T ss_pred ----------------------Eecccc-c-cCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcce
Confidence 333333 1 236666666666666655 3333233334556777889999999999
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEeC
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~~ 1427 (1427)
+|++|+|++||.|++||+|+++||||||++|.||.+|+|+++++++|+.|+.|++|++|++
T Consensus 535 ~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 535 SIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999974
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-126 Score=1173.74 Aligned_cols=584 Identities=32% Similarity=0.544 Sum_probs=537.1
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+||||||||||++++||+++||++||+.|++ +|+++||+||||+||+|+||++||||+||+.+++.+||+++
T Consensus 1 m~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~--~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l 78 (592)
T PRK09282 1 MKKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDK--VGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPL 78 (592)
T ss_pred CCccEEEECCCCccccccCCccCCHHHHHHHHHHHHH--cCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEE
Confidence 3679999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
|||+||.|++||++||||++++|+++|+++|+|+||||+++||++|++.++++++++|+ .+++++||+. +|
T Consensus 79 ~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~---~v~~~i~~t~---~p--- 149 (592)
T PRK09282 79 QMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGA---HVQGTISYTT---SP--- 149 (592)
T ss_pred EEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCC---EEEEEEEecc---CC---
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999993 56
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+|+++||+++++++.++|+|+|+||||+|+++|.++++||+++|+++ ++|||+|+|||+|||+||+++|++|||++||+
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ 228 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDT 228 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEe
Confidence 69999999999999999999999999999999999999999999999 69999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
|++|||+++|||+||+++++|+.+|+++++|+ ..+...++||.+.+..|
T Consensus 229 ai~g~g~~agn~~~e~vv~~L~~~g~~~~idl-------------------------------~~l~~~s~~~~~~~~~y 277 (592)
T PRK09282 229 AISPLAFGTSQPPTESMVAALKGTPYDTGLDL-------------------------------ELLFEIAEYFREVRKKY 277 (592)
T ss_pred eccccCCCcCCHhHHHHHHHHHhCCCCCccCH-------------------------------HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 45555666677788999
Q ss_pred CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCC
Q psy15244 976 APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKL 1053 (1427)
Q Consensus 976 ~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~ 1053 (1427)
++|+ +.+.+.++++|.|+|||||+||+.+||+++|+ +|++|+++|++||++||||||||||||||||||+|||.+|.
T Consensus 278 ~~~~-~~~~~~~~~v~~~~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nv~~~~ 356 (592)
T PRK09282 278 KQFE-SEFTIVDTRVLIHQVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLTGE 356 (592)
T ss_pred hcCC-CccccCCccEEEEcCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChhHhHHHHHHHHHHcCC
Confidence 9999 99999999999999999999999999999999 99999999999999999999999999999999999999886
Q ss_pred ChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhh
Q psy15244 1054 SYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKA 1133 (1427)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~ 1133 (1427)
+|. +||+||++|++|+||+||+|||++|+++||++++++++||++. ++| ||+++
T Consensus 357 ~~~---------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~p-~~~~~----- 410 (592)
T PRK09282 357 RYK---------VITKEVKDYVKGLYGRPPAPINEELRKKIIGDEEPITCRPADL-----------LEP-ELEKA----- 410 (592)
T ss_pred ccc---------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCcccc-----------cCC-CHHHH-----
Confidence 664 7999999999999999999999999999999999999999999 888 77777
Q ss_pred HHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC--CCCcccc
Q psy15244 1134 TKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD--KLPTRIF 1211 (1427)
Q Consensus 1134 ~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~l~~~~f 1211 (1427)
++ ++.+.++ . ..|| +|+|+|||+++.+|++++++||+++ .+|++.|
T Consensus 411 ~~---~~~~~~~--------------------~--~~e~-------~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (592)
T PRK09282 411 RK---EAEELGK--------------------S--EKED-------VLTYALFPQIAKKFLEEREAGELKPEPEPKEAAA 458 (592)
T ss_pred HH---HHHHHhc--------------------C--CHHH-------HHHHHhCcHHHHHHHHHHhccCCcccccCCcccc
Confidence 76 5544433 1 1178 9999999999999999999999998 9999999
Q ss_pred cCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccC
Q psy15244 1212 LNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNG 1291 (1427)
Q Consensus 1212 ~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~ 1291 (1427)
++|++.|+++.++++ ||++.|+
T Consensus 459 ~~~~~~~~~~~v~i~-Gk~~~i~--------------------------------------------------------- 480 (592)
T PRK09282 459 AGAEGIPTEFKVEVD-GEKYEVK--------------------------------------------------------- 480 (592)
T ss_pred ccCCCCCeEEEEEEC-CEEEEEE---------------------------------------------------------
Confidence 999999999999998 9999998
Q ss_pred CCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEE
Q psy15244 1292 PNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNI 1368 (1427)
Q Consensus 1292 ~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v 1368 (1427)
+.++++++ .|+++|++||+.++| |.+... ...++++.++.+|.|||+|+|
T Consensus 481 --------------------~~~~g~~~----~r~~~~~~ng~~~~v~v~d~~~~~---~~~~~~~~~~~~V~Ap~~G~v 533 (592)
T PRK09282 481 --------------------IEGVKAEG----KRPFYLRVDGMPEEVVVEPLKEIV---VGGRPRASAPGAVTSPMPGTV 533 (592)
T ss_pred --------------------EeeccCCC----cceEEEEecCceeeeeccCccccc---ccccCCCCCCceEeCCCcEEE
Confidence 22233221 455566666665555 221111 011566778899999999999
Q ss_pred EEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++|.|++||.|++||+|++||+||||++|+||.+|+|+++.+++|+.|+.||+|++|+
T Consensus 534 ~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 534 VKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred EEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999986
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-124 Score=1156.35 Aligned_cols=587 Identities=32% Similarity=0.491 Sum_probs=521.0
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|+|+||||||||||++++||+++||++||+.|++ +|+++||+|||||||+|+||++|+|||||+.+++.+||+++|
T Consensus 3 k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~--~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lq 80 (593)
T PRK14040 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDK--VGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQ 80 (593)
T ss_pred CccEEEECCcccccccccccccCHHHHHHHHHHHHH--cCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence 579999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
||+||+|++||++||||++++|++.|+++|+|+||||+++||++||+.++++||++|. +++++||||. +| +
T Consensus 81 ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~---~~~~~i~yt~---~p---~ 151 (593)
T PRK14040 81 MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGA---HAQGTLSYTT---SP---V 151 (593)
T ss_pred EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCC---eEEEEEEEee---CC---c
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999994 56 7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
|+++||+++++++.++|||+|+||||+|+++|.++++||++||+++ ++|||+|+|||+|||+||+++|++|||++||+|
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~a 230 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTA 230 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEEec
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred cccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcC
Q psy15244 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYA 976 (1427)
Q Consensus 897 v~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~ 976 (1427)
++|||+|+|||+||+++++|+.+++++++|+ ..+...++||..++..|+
T Consensus 231 i~glG~~~Gn~~le~vv~~L~~~~~~~gidl-------------------------------~~l~~is~~~~~v~~~Y~ 279 (593)
T PRK14040 231 ISSMSMTYGHSATETLVATLEGTERDTGLDI-------------------------------LKLEEIAAYFREVRKKYA 279 (593)
T ss_pred cccccccccchhHHHHHHHHHhcCCCcCCCH-------------------------------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 556666777778889999
Q ss_pred CCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCC
Q psy15244 977 PFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLS 1054 (1427)
Q Consensus 977 ~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~ 1054 (1427)
+|+ +.+.+.+++||.|||||||||||.+||+++|+ +|++|+++|++||++||||||||||||||||||+|||..|.+
T Consensus 280 ~~~-~~~~~~~~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~~VTP~Sqivg~~A~~N~l~~~r 358 (593)
T PRK14040 280 KFE-GQLKGVDSRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIPLVTPTSQIVGTQAVLNVLTGER 358 (593)
T ss_pred cCC-cccccCcccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECChhHHHHHHHHHhcCChHh
Confidence 999 99999999999999999999999999999999 999999999999999999999999999999999998876655
Q ss_pred hhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhH
Q psy15244 1055 YRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKAT 1134 (1427)
Q Consensus 1055 ~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~ 1134 (1427)
|+ +||+||++|++|+||+||+|||++++++||+|++++++||++. ++|. ++++ +
T Consensus 359 ~~---------~~~~~v~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~p~-~~~~-----~ 412 (593)
T PRK14040 359 YK---------TITKETAGVLKGEYGATPAPVNAELQARVLEGAEPITCRPADL-----------LAPE-LDKL-----E 412 (593)
T ss_pred he---------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCChhhh-----------cCch-HHHH-----H
Confidence 43 7999999999999999999999999999999999999999999 6664 4454 6
Q ss_pred HHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCC
Q psy15244 1135 KKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNG 1214 (1427)
Q Consensus 1135 ~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g 1214 (1427)
+++.++.+.-|. .+.+.++|| +|+|+|||++|.+|++++++ +.|+++
T Consensus 413 ~~~~~~~~~~~~-----------------~~~~e~~e~-------~l~~~~~p~v~~~f~~~~~~---------~~~~~~ 459 (593)
T PRK14040 413 AELRRQAQEKGI-----------------TLAENAIDD-------VLTYALFPQIGLKFLENRHN---------PAAFEP 459 (593)
T ss_pred HHHHHHhhhcCC-----------------CcccCCHHH-------HHHHHhccHHHHHHHHhhcc---------cccccC
Confidence 633332211130 011113367 99999999999999999976 577888
Q ss_pred CCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCC
Q psy15244 1215 PNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNI 1294 (1427)
Q Consensus 1215 ~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~ 1294 (1427)
++++++..+. + ..+..+.|+++|++||+.+.+.+.+..... ...+
T Consensus 460 ~~~~~~~~~~---~------------~~~e~g~~~~~~~vnG~~~~V~v~~~~~~~-----~~~~--------------- 504 (593)
T PRK14040 460 VPQAEAAQPA---A------------KAEPAGSETYTVEVEGKAYVVKVSEGGDIS-----QITP--------------- 504 (593)
T ss_pred CCcccccccc---c------------cCCCCCCeEEEEEECCEEEEEEECCCCccc-----cccc---------------
Confidence 8888865442 1 123457899999999999999998772100 0000
Q ss_pred CcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccC-CCCCCCceecCCCeEEEEEEe
Q psy15244 1295 GEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKA-DSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1295 g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a-~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.+.... ....++++ ++.++.+|+|||+|+|++|+|
T Consensus 505 -------------------------------------~~~~~~-------~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V 540 (593)
T PRK14040 505 -------------------------------------AAPAAA-------PAAAAAAAPAAAAGEPVTAPLAGNIFKVIV 540 (593)
T ss_pred -------------------------------------cccccc-------cccccccccCCCCCceEECCccEEEEEEEe
Confidence 000000 00011122 445677999999999999999
Q ss_pred cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1374 KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
++||.|++||+|+++|+||||++|.||.+|+|+++++++|+.|..|++|++|
T Consensus 541 ~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 541 TEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999987
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-122 Score=1137.77 Aligned_cols=579 Identities=31% Similarity=0.511 Sum_probs=519.1
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+||++++||+++||++||+.|++ +|+++||+|||||||+|++|++|+||++++.+++.+|++++|||+|
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~--~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~R 78 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDD--VGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLR 78 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHH--cCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEc
Confidence 68999999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
|.|++||++||||++++|+++|+++|+|+||||+++||++|++.++++++++|+ .+++++||+. +| +|+++
T Consensus 79 g~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~---~v~~~i~~t~---~p---~~~~~ 149 (582)
T TIGR01108 79 GQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGA---HAQGTISYTT---SP---VHTLE 149 (582)
T ss_pred cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC---EEEEEEEecc---CC---CCCHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999993 77 69999
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
||+++++++.++|||+|+||||+|+++|.+++++|++||+++ ++||++|+|||+|||+||+++|++|||++||+|++||
T Consensus 150 ~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~Gl 228 (582)
T TIGR01108 150 TYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSM 228 (582)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccc
Confidence 999999999999999999999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCC
Q psy15244 901 SGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFEC 980 (1427)
Q Consensus 901 G~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~ 980 (1427)
|||+|||+||+++++|+.+|+++++|+++|. ..++||.+++++|++|+
T Consensus 229 G~~tGn~~le~vv~~L~~~g~~tgid~~~L~-------------------------------~l~~~~~~v~~~Y~~~~- 276 (582)
T TIGR01108 229 SGGTSHPPTETMVAALRGTGYDTGLDIELLL-------------------------------EIAAYFREVRKKYSQFE- 276 (582)
T ss_pred cccccChhHHHHHHHHHhcCCCcccCHHHHH-------------------------------HHHHHHHHHHHHhhcCC-
Confidence 9999999999999999999999999995554 45666666888999998
Q ss_pred CCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhh
Q psy15244 981 TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDV 1058 (1427)
Q Consensus 981 ~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~ 1058 (1427)
|.+++.++++|+||+||||+|||.+||+++|+ +|++|+++|++||++|||||||||+||||||||+|||..|.+|+
T Consensus 277 ~~~~~~~~~v~~~e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~~~r~~-- 354 (582)
T TIGR01108 277 GQLKGPDSRILVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLTGERYK-- 354 (582)
T ss_pred CcccCCCccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCccHHHHHHHHHhhcCHHhhe--
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999887665553
Q ss_pred hhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCc-ccCCCCCCCccccccccCCCccccccccChhhHHHH
Q psy15244 1059 MENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDH-ALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKF 1137 (1427)
Q Consensus 1059 ~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~-~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~ 1137 (1427)
+||+||++|++|+||+||+|||++|+++||++++++ ++||++. ++|. ++++ ++
T Consensus 355 -------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~~rp~~~-----------~~~~-~~~~-----~~-- 408 (582)
T TIGR01108 355 -------TITKETKGYLKGEYGRTPAPINAELQRKILGDEKPIVDCRPADL-----------LEPE-LDKL-----RA-- 408 (582)
T ss_pred -------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCcCCCCcccc-----------cCch-HHHH-----HH--
Confidence 699999999999999999999999999999999999 9999999 6664 5444 66
Q ss_pred HhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCC
Q psy15244 1138 MKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNI 1217 (1427)
Q Consensus 1138 ~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~ 1217 (1427)
++.++++ ...++|| +|+|+|||+++.+|++++++| .|++++++
T Consensus 409 -~~~~~~~--------------------~~~~~e~-------~l~~~~~p~~~~~~~~~~~~~---------~~~~~~~~ 451 (582)
T TIGR01108 409 -EVREAGA--------------------EKNSIED-------VLTYALFPQVGLKFLENRHNP---------AAFEPKPE 451 (582)
T ss_pred -HHHHhcc--------------------cCCCHHH-------HHHHHhccHHHHHHHHhhhcc---------ccccCCCC
Confidence 5655544 2367899 999999999999999999987 67889999
Q ss_pred CcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcc
Q psy15244 1218 GEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEE 1297 (1427)
Q Consensus 1218 g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~ 1297 (1427)
++++. + . +++.... ..+.++.|++||++||+.+.+++.+.....
T Consensus 452 ~~~~~---~--~--~~~~~~~--~~~~~g~~~~~~~vnG~~~~V~v~d~~~~~--------------------------- 495 (582)
T TIGR01108 452 EKVIE---Q--E--HAQVVGK--YEETHASGSYTVEVEGKAFVVKVSPGGDVS--------------------------- 495 (582)
T ss_pred cchhh---h--h--hhhcccc--ccccCCceEEEEEECCEEEEEEEcCCcccc---------------------------
Confidence 98766 1 1 2221111 344557899999999999999888872110
Q ss_pred eeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCC
Q psy15244 1298 FSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQ 1377 (1427)
Q Consensus 1298 ~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd 1377 (1427)
. +... .. .......++++++++++|.|||||+|++|+|++||
T Consensus 496 --------------~--~~~~-~~---------------------~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~Gd 537 (582)
T TIGR01108 496 --------------Q--ITAS-AP---------------------ANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQ 537 (582)
T ss_pred --------------c--cccc-cc---------------------cccccccccCCCCCCCeEeCCccEEEEEEEeCCCC
Confidence 0 0000 00 00001233456678899999999999999999999
Q ss_pred EEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEE
Q psy15244 1378 QVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLV 1422 (1427)
Q Consensus 1378 ~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L 1422 (1427)
.|++||+|++|||||||++|.||.+|+|+++++++|+.|+.|++|
T Consensus 538 ~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 538 TVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 999999999999999999999999999999999999999999975
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-115 Score=974.06 Aligned_cols=443 Identities=35% Similarity=0.584 Sum_probs=419.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+||||||||||++|||||++||++|++.||+ +|++|+|+|||||||+|+|||+||||||||+||+.+||+++
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~--~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~L 80 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDK--VGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKL 80 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHh--cCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHH
Confidence 5789999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
|||+||+|+|||++|+|+|+++|+++|+++|+|+|||||++||++||+.+++++++.|. +++++|||| .+|
T Consensus 81 QMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~---h~q~~i~YT---~sP--- 151 (472)
T COG5016 81 QMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGA---HVQGTISYT---TSP--- 151 (472)
T ss_pred HHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCc---eeEEEEEec---cCC---
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999 588
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.|+.+||+++++++.++|+|+||||||+|+++|..+|+||+++|+.+ ++||++|||+|.|+|.+++++|++||||+||+
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCcchhhh
Confidence 79999999999999999999999999999999999999999999999 69999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
++++|+++||||++|+++++|+++++|+|+|+ +.+..+.+|+.++|+.|
T Consensus 231 Aisp~S~gtsqP~tEtmv~aL~gt~yDtgld~-------------------------------~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 231 AISPLSGGTSQPATETMVAALRGTGYDTGLDL-------------------------------ELLEEIAEYFREVRKKY 279 (472)
T ss_pred hhccccCCCCCCcHHHHHHHhcCCCCCccccH-------------------------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 66777888999999999
Q ss_pred -CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcC
Q psy15244 976 -APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052 (1427)
Q Consensus 976 -~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~ 1052 (1427)
..|+ +...+.+++|+++|+||||+||+.+||+++|+ +++||+++++|||++|||||+|||+|||||+||++||..|
T Consensus 280 ~~~~~-~~~~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eVLeEvprVredlGypPLVTPtSQiVGtQAvlNVl~G 358 (472)
T COG5016 280 KGLLE-PQAKGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEVLEEVPRVREDLGYPPLVTPTSQIVGTQAVLNVLTG 358 (472)
T ss_pred hhccC-ccccCCCCcceEeeCChHHHHHHHHHHHHcchhhHHHHHHHHhHHHHhhcCCCCccCchhhhhhHHHHHHHHhc
Confidence 6667 88999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCC-CCCcccCCCCCCCccccccccCCCccccccccCh
Q psy15244 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDS-LKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131 (1427)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~-~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p 1131 (1427)
.+|+ .+++|+++|++|+||+||++++++++++||++ +++|+|||++.++|++++.
T Consensus 359 erYK---------~It~E~~~yv~G~YGrtPapi~~el~~~ilg~~~~~i~~RpADll~pe~~k~--------------- 414 (472)
T COG5016 359 ERYK---------VITKETKDYVKGLYGRTPAPINAELIEKILGDEEKPITCRPADLLEPELDKL--------------- 414 (472)
T ss_pred chhh---------HHHHHHHHHhccccCCCCCCCCHHHHHHHhCCCCCcccCChhhhcchHHHHH---------------
Confidence 9997 46999999999999999999999999999999 5899999999966655443
Q ss_pred hhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1132 ~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
++ ++.+ .| ..-.+|| ||+|+|||+++.+|++.|.+
T Consensus 415 --k~---e~~~-~~--------------------~~~~eeD-------VLtyalfp~va~~Fl~~r~~ 449 (472)
T COG5016 415 --KK---ELEE-LA--------------------IEEEEED-------VLTYALFPQVAKKFLEGREK 449 (472)
T ss_pred --HH---HHHH-Hh--------------------hhccccc-------chhhhhhHHHHHHHHhcccc
Confidence 33 2222 22 1123678 99999999999999999976
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-113 Score=1017.88 Aligned_cols=449 Identities=31% Similarity=0.500 Sum_probs=427.3
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
.+++|+|+||||||||||+++|||+++|+++||+.||+ +|+++||+|||||||+|+||++|||||||+.+|+.+||++
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~--~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~ 86 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDK--IGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTR 86 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHh--cCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCc
Confidence 34689999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
+|||+||+|+|||++||||++++|++.|+++|||+|||||++||++||+.+++.+|++|+ ++++++||++ +|
T Consensus 87 lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~---sp-- 158 (468)
T PRK12581 87 LQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTT---SP-- 158 (468)
T ss_pred eeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEe---CC--
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999994 67
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
+|+++||++++++++++|||+|+||||+|+++|.++++||+++|+. +++||++|+|||+|||+||+++|++|||++||
T Consensus 159 -~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD 236 (468)
T PRK12581 159 -VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRID 236 (468)
T ss_pred -cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEE
Confidence 7999999999999999999999999999999999999999999985 59999999999999999999999999999999
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhh
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVREL 974 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~ 974 (1427)
+|++|||+++|||++|+++++|+.+|+++++|+ ..+...+++|+++|..
T Consensus 237 ~ai~g~g~gagN~~tE~lv~~L~~~g~~tgiDl-------------------------------~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 237 TALSPFSEGTSQPATESMYLALKEAGYDITLDE-------------------------------TLLEQAANHLRQARQK 285 (468)
T ss_pred eeccccCCCcCChhHHHHHHHHHhcCCCCCcCH-------------------------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6666778888999999
Q ss_pred cCC---CCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHH
Q psy15244 975 YAP---FECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMT 1049 (1427)
Q Consensus 975 Y~~---f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v 1049 (1427)
|.| |+ +...+.++++|.|||||||+|||++||+++|+ +|+||+++|++||++||||||||||||||||||+|||
T Consensus 286 y~~~~~~~-~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g~~dr~~ev~~e~~~V~~~lG~p~~VTP~Sqivg~qA~~nV 364 (468)
T PRK12581 286 YLADGILD-PSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLGYPPLVTPLSQMVGTQAAMNV 364 (468)
T ss_pred hcccccCC-CccCCCCcceeeCCCCcchHHHHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCCEECChhHHHHHHHHHHH
Confidence 998 88 88999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCcccccccc
Q psy15244 1050 QEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLI 1129 (1427)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~ 1129 (1427)
++|++|+ +||+||++|++|+||+||+|||++++++||++++++++||++. ++| |++++
T Consensus 365 ~~g~ry~---------~~~~ev~~~~~G~yG~~p~~~~~el~~~il~~~~~~~~rp~~~-----------l~p-~~~~~- 422 (468)
T PRK12581 365 ILGKPYQ---------MVSKEIKQYLAGDYGKTPAPVNEDLKRSQIGSAPVTTNRPADQ-----------LSP-EFEVL- 422 (468)
T ss_pred HcCCCch---------hCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCCCcccc-----------cCc-cHHHH-
Confidence 9999997 6899999999999999999999999999999999999999999 777 66555
Q ss_pred ChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCC
Q psy15244 1130 FPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKL 1206 (1427)
Q Consensus 1130 ~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 1206 (1427)
++ ++.+. ..++|| +|+|+|||+|+.+|+++|++|||+.++
T Consensus 423 ----r~---~~~~~-----------------------~~~~ed-------vl~~~l~p~v~~~f~~~~~~~~~~~~~ 462 (468)
T PRK12581 423 ----KA---EVADL-----------------------AQTDED-------VLTYALFPSVAKPFLTTKYQTDDVIKV 462 (468)
T ss_pred ----HH---HHhhh-----------------------cCCHHH-------HHHHHcCcHHHHHHHHHHHhcCCHHHH
Confidence 55 33221 146788 999999999999999999999998764
|
|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-112 Score=979.43 Aligned_cols=452 Identities=47% Similarity=0.808 Sum_probs=443.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
||+||||+||||||+|+||+|+++|+++|+|||++|..++|.++||++|.|+ +.+..++|++++.|++.|++.|+|+||
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iG-papaaeSYL~~dkIi~Aa~~tGA~AIH 79 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIG-PAPAAESYLDIDKIIDAARRTGAQAIH 79 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcC-CCchhhhhccHHHHHHHHHHhCccccc
Confidence 6899999999999999999999999999999999999999999999999999 778889999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||||||++|+++|+++|+.||||++.+++.|+||..+|.++.++|+|+.||+.+.+.+.+++..+++++||||+||+
T Consensus 80 PGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKA 159 (645)
T COG4770 80 PGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKA 159 (645)
T ss_pred CCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.||||||||++.+++|+.++|+.+++|+.++||++.+|||+|++.|||||+|+++|+|||++||+|||||+||||||++
T Consensus 160 saGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVI 239 (645)
T COG4770 160 SAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVI 239 (645)
T ss_pred ccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
|++|+|.|++++|++|.+.|+++++++||.|++||||++|.++.|||||||+|+|+|||+||++||+|||+||||+|.|+
T Consensus 240 EEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Ge 319 (645)
T COG4770 240 EEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGE 319 (645)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+|+ +.|++++.+||||++|||+|||..+|.|++|++..|+.|.++++|+|++ +..|+.|+++|||||+|+|+||.|
T Consensus 320 kL~---~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsG-V~~G~~Is~~YDpMiAKLi~~G~d 395 (645)
T COG4770 320 KLP---FTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSG-VREGDEISPFYDPMIAKLIVHGAD 395 (645)
T ss_pred cCC---cccccccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccC-cccCCccccccchHHHHHhhcCCC
Confidence 985 7899999999999999999999999999999999999999999999965 789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhhhcCC
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLERNS 513 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~~~~ 513 (1427)
|++|+++|.+||+++.|.|+.||++||..++.||+|+.| +.+|.||.++ +++|...+
T Consensus 396 R~eAl~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g-~~~T~~i~r~~~~~~~~~~ 453 (645)
T COG4770 396 REEALDRLRRALAEFEVEGIATNIPFLRALMADPRFRGG-DLDTGFIAREIEDLFAPAP 453 (645)
T ss_pred HHHHHHHHHHHHHhhEecCccccHHHHHHHhcCcccccC-CCcceeeeecccccccCCC
Confidence 999999999999999999999999999999999999999 9999999998 88884433
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-110 Score=1003.16 Aligned_cols=444 Identities=31% Similarity=0.490 Sum_probs=422.9
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|+|+||||||||||++++||+++||++||+.||+ +|+++||+|||||||+|+||++|||||||+.+|+.+||+++|
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~--~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lq 80 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDN--AGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQ 80 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHHHHHh--cCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEE
Confidence 579999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
||+||+|++||++||||++++||+.|+++|+|+||||+++||++|++.+++.++++|. +++++||||. +| +
T Consensus 81 mL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~---~~~~~i~yt~---sp---~ 151 (499)
T PRK12330 81 MLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGK---HAQGTICYTV---SP---I 151 (499)
T ss_pred EEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCC---eEEEEEEEec---CC---C
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999994 56 7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
||++||+++++++.++|||+|+||||+|+++|.++++||++||+++| ++||++|||||+|+|+||+++|++||||+||+
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhc
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELY 975 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y 975 (1427)
|++|||+++|||++|+++++|+.+|+++++|+ ..+...++||.++|..|
T Consensus 232 ai~Glg~~aGn~atE~vv~~L~~~g~~tgiDl-------------------------------~~L~~i~~~~~~vr~~y 280 (499)
T PRK12330 232 AISSMSLGPGHNPTESLVEMLEGTGYTTKLDM-------------------------------DRLLKIRDHFKKVRPKY 280 (499)
T ss_pred ecccccccccchhHHHHHHHHHhcCCCCCCCH-------------------------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 66667788899999999
Q ss_pred CCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCC
Q psy15244 976 APFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKL 1053 (1427)
Q Consensus 976 ~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~ 1053 (1427)
.+|+ +.+.+.+..++.||+||||+||+.+||+++|+ +|+||+++|++||++||||||||||||||||||+|||++|
T Consensus 281 ~~~~-~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~~~~VTP~Sqivg~qA~~nv~~g- 358 (499)
T PRK12330 281 KEFE-SKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYPPLVTPSSQIVGTQAVFNVLMG- 358 (499)
T ss_pred hccc-ccccCCCCccccCCCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHHcC-
Confidence 9999 88999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHh--CCCCCcccCCCCCCCccccccccCCCccccccccCh
Q psy15244 1054 SYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVL--DSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131 (1427)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l--~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p 1131 (1427)
+|+ .+|+||++|++|+||+||+|||++++++|| +|++++++||+++ ++|. |+++
T Consensus 359 ry~---------~~~~e~~~~~~G~yG~~p~~~~~e~~~~~~~~~~~~~~~~rp~~~-----------l~p~-~~~~--- 414 (499)
T PRK12330 359 RYK---------VLTGEFADLMLGYYGETPGERNPEVVEQAKKQAKKEPITCRPADL-----------LEPE-WDKL--- 414 (499)
T ss_pred ccc---------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHHhhCCCCCCcCChhhh-----------cCch-HHHH---
Confidence 774 579999999999999999999999999996 6899999999999 6664 5555
Q ss_pred hhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhcc
Q psy15244 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEF 1200 (1427)
Q Consensus 1132 ~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 1200 (1427)
++ ++.+.+| ...++|| +|+|+|||+|+.+|+++|+++
T Consensus 415 --~~---~~~~~~~--------------------~~~~~ed-------vl~y~l~p~v~~~f~~~~~~~ 451 (499)
T PRK12330 415 --RA---EALALEG--------------------CDGSDED-------VLTYALFPQVAPKFFATRAEG 451 (499)
T ss_pred --HH---HHHHhcc--------------------CCCCHHH-------HHHHHcCcHHHHHHHHHHHhc
Confidence 66 5555555 3468899 999999999999999999864
|
|
| >KOG0238|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-107 Score=924.82 Aligned_cols=447 Identities=44% Similarity=0.769 Sum_probs=437.3
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCC
Q psy15244 60 ILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYG 139 (1427)
Q Consensus 60 VLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~g 139 (1427)
|||+||||||+|++|+|++||+++|+|||+.|+.++|..+||++|+++ +.+...+|++.+.|++.|++.++++||||||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig-~a~~~~SYL~~~~I~~aa~~tgaqaihPGYG 79 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIG-PAPAAQSYLRMDKIIDAAKRTGAQAIHPGYG 79 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecC-CCchhhhhhhHHHHHHHHHhcCCceecCCcc
Confidence 699999999999999999999999999999999999999999999999 6677899999999999999999999999999
Q ss_pred cccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC
Q psy15244 140 FLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219 (1427)
Q Consensus 140 flsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg 219 (1427)
|||||.+|+++|+++||.|+||++.+++.++||...|++++++|||+.||+++...|.+++.+.++++|||||||+..||
T Consensus 80 FLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GG 159 (670)
T KOG0238|consen 80 FLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGG 159 (670)
T ss_pred ccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEcc
Q psy15244 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAP 299 (1427)
Q Consensus 220 GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aP 299 (1427)
||+|||++.+++|+++.++.+++|+.++||++.+|+|+||+++||++||+++|++||.++|+|||||+||||||++|++|
T Consensus 160 GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaP 239 (670)
T KOG0238|consen 160 GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAP 239 (670)
T ss_pred CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcc
Q psy15244 300 AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTE 379 (1427)
Q Consensus 300 a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~ 379 (1427)
+|.++++.|.+|.++|+++++++||.|++||||++|+.++|||+|||+|+|+|||+||++||+||++||||+|.|++|+
T Consensus 240 ap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp- 318 (670)
T KOG0238|consen 240 APNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLP- 318 (670)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCC-CCcccccCCCcCCCceecccCccceEEEEEEcCCHHH
Q psy15244 380 LGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPA-SIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKS 458 (1427)
Q Consensus 380 l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~-~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~e 458 (1427)
++|++++.+|||++||||||||.++|+|.+|++..|..|. .+++|+| .++++|+.|+++|||||+|+++||.||++
T Consensus 319 --~~q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvd-tgV~~g~~vs~~YDpmiaKlvvwg~dR~~ 395 (670)
T KOG0238|consen 319 --LKQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVD-TGVRSGDEVSIHYDPMIAKLVVWGKDREE 395 (670)
T ss_pred --CCcceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeee-cCcccCCcccccccchheeeeEecCCHHH
Confidence 8899999999999999999999999999999999999885 7899999 45799999999999999999999999999
Q ss_pred HHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhhhcC
Q psy15244 459 SCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLERN 512 (1427)
Q Consensus 459 A~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~~~ 512 (1427)
|+.||.++|+++.|+|+.|||+||+.|+.||+|..| +++|.||++| ++||...
T Consensus 396 Al~kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g-~V~T~fi~~~~~elf~~~ 449 (670)
T KOG0238|consen 396 ALNKLKDALDNYVIRGVPTNIDFLRDIISHPEFAKG-NVSTKFIPEHQPELFAPE 449 (670)
T ss_pred HHHHHHHHHhhcEEecCccchHHHHHHhcChhhhcC-ccccccchhcCccccCcc
Confidence 999999999999999999999999999999999999 9999999999 8888763
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-104 Score=949.39 Aligned_cols=439 Identities=33% Similarity=0.537 Sum_probs=414.9
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
+|.|+|||||||+||+++++|+++||++||+.|++ +|+++||+||||+||+|+||++|+|||+++.+++.+||+++||
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~--~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~ 79 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDR--MGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQM 79 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHH--cCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCC
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKY 817 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~ 817 (1427)
|+||.|.+||++||+|++++|+++|+++|+|+||||+++||++|++.++++++++|. ++++++||+. +| ++
T Consensus 80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~---~v~~~i~~t~---~p---~~ 150 (467)
T PRK14041 80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA---HVQGAISYTV---SP---VH 150 (467)
T ss_pred EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC---EEEEEEEecc---CC---CC
Confidence 999999999999999999999999999999999999999999999999999999999 9999999993 46 89
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 818 SLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 818 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
+++||+++++++.++|||+|+||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|++|||++||+|+
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEeec
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCC
Q psy15244 898 DSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAP 977 (1427)
Q Consensus 898 ~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~ 977 (1427)
+|||+++|||++|+++++|+.+|+++++|+ ..+...++||+++++.|.+
T Consensus 230 ~~~g~gagN~atE~lv~~L~~~g~~tgiDl-------------------------------~~L~~~~~~~~~vr~~y~~ 278 (467)
T PRK14041 230 SPFSMGTSQPPFESMYYAFRENGKETDFDR-------------------------------KALKFLVEYFTKVREKYSE 278 (467)
T ss_pred cccCCCCCChhHHHHHHHHHhcCCCCCcCH-------------------------------HHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 6666778888889999999
Q ss_pred CCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCCh
Q psy15244 978 FECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSY 1055 (1427)
Q Consensus 978 f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~ 1055 (1427)
|+ +.+.+.+++||.|||||||+|||++||+++|+ +|+||+++|++||++|||||||||+||||||||+|||.+|.+|
T Consensus 279 ~~-~~~~~~~~~v~~~q~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~Nvl~g~r~ 357 (467)
T PRK14041 279 YD-VGMKSPDSRILVSQIPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTSQIVGVQAVLNVLTGERY 357 (467)
T ss_pred cC-CCCCCCCcCeeeCCCCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChhHHHHHHHHHhhcChhhe
Confidence 98 88899999999999999999999999999999 9999999999999999999999999999999999999877666
Q ss_pred hhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHH
Q psy15244 1056 RDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATK 1135 (1427)
Q Consensus 1056 ~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~ 1135 (1427)
+ +||+||++|++|+||+||+|||++++++||++++++++||++. ++|. ++++ ++
T Consensus 358 ~---------~~~~~~~~~~~G~~G~~p~~~~~~~~~~il~~~~~~~~rp~~~-----------~~p~-~~~~-----~~ 411 (467)
T PRK14041 358 K---------RVTNETKNYVKGLYGRPPAPIDEELMKKILGDEKPIDCRPADL-----------LEPE-LEKA-----RK 411 (467)
T ss_pred e---------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCChhhc-----------cCch-HHHH-----HH
Confidence 4 7999999999999999999999999999999999999999999 6663 3333 44
Q ss_pred HHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1136 KFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1136 ~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
++|. ...++|| +|+|+|||+++.+|++.|++
T Consensus 412 -------~~~~-------------------~~~~~e~-------~l~y~~~p~v~~~f~~~~~~ 442 (467)
T PRK14041 412 -------ELGI-------------------LAETDED-------LLIYVILGEVGKKFLKKKYE 442 (467)
T ss_pred -------Hhcc-------------------cCCCHHH-------HHHHHcCcHHHHHHHHhccc
Confidence 3341 1257788 99999999999999999965
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-104 Score=946.33 Aligned_cols=440 Identities=32% Similarity=0.579 Sum_probs=411.8
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|.|+|||||||+||+++++|+++||++||+.|++ +|+++||+|||||||+|+||++|+|||+++.+++.+||+++|
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~--~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~ 79 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDN--AGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQ 79 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHH--cCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEE
Confidence 579999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
||+||.|++||++||||++++|+++|+++|+|+||||+++||++|++.++++++++|. ++++++||+. +| +
T Consensus 80 ~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~---~v~~~i~~t~---~p---~ 150 (448)
T PRK12331 80 MLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGG---HAQVAISYTT---SP---V 150 (448)
T ss_pred EEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC---eEEEEEEeec---CC---C
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999993 45 7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++++||+++++++.++|||+|+||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|++|||++||+|
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~s 229 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEee
Confidence 9999999999999999999999999999999999999999999999 599999999999999999999999999999999
Q ss_pred cccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcC
Q psy15244 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYA 976 (1427)
Q Consensus 897 v~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~ 976 (1427)
++|||+++|||++|+++++|+.+|+++++|++. +...++||.++++.|.
T Consensus 230 v~glg~gaGN~~tE~lv~~L~~~g~~tgidl~~-------------------------------L~~~~~~~~~~r~~y~ 278 (448)
T PRK12331 230 ISPFAGGTSQPATESMVAALQDLGYDTGLDLEE-------------------------------LSEIAEYFNPIRDHYR 278 (448)
T ss_pred ccccCCCcCCHhHHHHHHHHHhcCCCCCCCHHH-------------------------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999944 4555666667777776
Q ss_pred C---CCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHc
Q psy15244 977 P---FECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQE 1051 (1427)
Q Consensus 977 ~---f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~ 1051 (1427)
. ++ +.+.+.++++|.|||||||+||+++||+++|+ +|+||+++|++||++|||||||||+||||||||+|||.+
T Consensus 279 ~~~~~~-~~~~~~~~~v~~~~~PGG~~snl~~ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~ 357 (448)
T PRK12331 279 EEGILN-PKVKDVEPKTLIYQVPGGMLSNLLSQLKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLSQMVGTQALMNVIS 357 (448)
T ss_pred hhccCC-cccccCCcCeeecCCCcchHhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHhc
Confidence 4 44 67788999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccCh
Q psy15244 1052 KLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFP 1131 (1427)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p 1131 (1427)
|.+|+ +||+||++|++|+||+||+|||++++++||++++++++||++. ++| |++++
T Consensus 358 g~r~~---------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~p-~~~~~--- 413 (448)
T PRK12331 358 GERYK---------MVPNEIKDYVRGLYGRPPAPIAEEIKKKIIGDEEVITCRPADL-----------IEP-QLEKL--- 413 (448)
T ss_pred chhhc---------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCChhhc-----------CCc-cHHHH---
Confidence 76664 6999999999999999999999999999999999999999999 777 66665
Q ss_pred hhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1132 KATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1132 ~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
++ ++.+. . .++|| +|+|+|||+|+.+|+++|++
T Consensus 414 --~~---~~~~~-~----------------------~~~e~-------~l~y~~~p~v~~~~~~~~~~ 446 (448)
T PRK12331 414 --RE---EIAEY-A----------------------ESEED-------VLSYALFPQQAKDFLGRRED 446 (448)
T ss_pred --HH---HHHHh-c----------------------CCHHH-------HHHHHcCcHHHHHHHHHhhc
Confidence 66 33322 1 35688 99999999999999999964
|
|
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-90 Score=822.32 Aligned_cols=444 Identities=49% Similarity=0.850 Sum_probs=433.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|||++|.+++|+|+++|+++|+||+++|..+.|..++|++++++ +....++|+|++.++..|++.++|+||
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~-~~~~~~syl~i~~ii~~a~~~gadai~ 79 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIG-PAPSADSYLNIDAIIAAAEETGADAIH 79 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcC-CccchhhhhhHHHHHHHHHhcCCceEc
Confidence 6899999999999999999999999999999999999999999999999998 677789999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||+|||+.|+++|+++|+.|+||++++++.|+||..+|++++++|||+||++.+.+.+.+++.++++++||||||||
T Consensus 80 pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa 159 (449)
T COG0439 80 PGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKA 159 (449)
T ss_pred ccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|||+|++.+||.+++..+++++...|+++.+++||||++++|+++|+++|++|+++++++|||++||+|||++
T Consensus 160 ~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvi 239 (449)
T COG0439 160 AAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVI 239 (449)
T ss_pred CCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.++++.+.+.++++++||.|++|+||+++.+|+|||||||||+||+|++||++||+||+++||++++|+
T Consensus 240 eeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge 319 (449)
T COG0439 240 EEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGE 319 (449)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999997788999999999999999999999999999999999998
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.|+++..+||+++|||++|||.++|.|++|+++.+..|+++|||++ ...+.|+.|+++||||+||++++|.+
T Consensus 320 ~l~---~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d-~~~~~~~~i~~~yds~i~k~i~~~~~ 395 (449)
T COG0439 320 PLS---LKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVD-SGVYDGYRVPPYYDSMIGKVIVHGRT 395 (449)
T ss_pred CCC---CCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEE-eecccCcccCcchhhheeEEEEecCC
Confidence 764 67899999999999999999999999999999999999999999999 55789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|+.+|.++|.++.|+|++||++|++.++++++|.+| +++|+|++++
T Consensus 396 r~~ai~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g-~~~t~~l~~~ 444 (449)
T COG0439 396 RDEAIARMRRALDELVIDGIKTNIPLLQEILRDPDFLAG-DLDTHFLETH 444 (449)
T ss_pred hHHHHHHHHHHHHheEecCccCChHHHHHHhcChHhhcC-Ccchhhhhhc
Confidence 999999999999999999999999999999999999999 9999999886
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-87 Score=818.56 Aligned_cols=448 Identities=48% Similarity=0.841 Sum_probs=429.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|||++|++++++|+++|+++|++|+++|..+++.++||++++++ +.....+|+|++.|+++|+++++|+||
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~-~~~~~~syld~~~i~~~a~~~~~daI~ 79 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIG-PAPPSKSYLNIERIIDVAKKAGADAIH 79 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcC-CCCcccCccCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999999999999999999999998 445567999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||++||+.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||
T Consensus 80 pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp 159 (499)
T PRK08654 80 PGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKA 159 (499)
T ss_pred ECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999874447899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+||++|++.+||.++++.+.+++...|+++.+|+|+||++++|++||+++|++|+++++++|+|++|++||+++
T Consensus 160 ~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~i 239 (499)
T PRK08654 160 SAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLI 239 (499)
T ss_pred CCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceE
Confidence 99999999999999999999999999888888999999999999989999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++++++|.+.|.++++++||.|++||||+++ +|++||||||||+|++|++||++||+|++++|+++|+|.
T Consensus 240 e~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~-~g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~ 318 (499)
T PRK08654 240 EEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS-NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGE 318 (499)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE-CCcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCC
Confidence 9999988999999999999999999999999999999997 577999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+|+ +.|+++..+||||+|||++|||.++|.|++|+|+.+++|+++|+|+|++ ++.|+.|+++|||++||||+||+|
T Consensus 319 ~l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~-~~~g~~v~~~~ds~~ak~i~~g~~ 394 (499)
T PRK08654 319 ELS---FKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSG-VHMGYEIPPYYDSMISKLIVWGRT 394 (499)
T ss_pred CCC---CcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECc-ccCCCCcCCccCchhheeeEeCCC
Confidence 875 5677788899999999999999999999999999999999999999965 789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhh
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~ 510 (1427)
|++|++||.+||++++|+|++||++||++||+||+|++| +++|+||+++|+|+.
T Consensus 395 r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~-~~~t~~~~~~~~~~~ 448 (499)
T PRK08654 395 REEAIARMRRALYEYVIVGVKTNIPFHKAVMENENFVRG-NLHTHFIEEETTILE 448 (499)
T ss_pred HHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCC-CccchhhhcCHHHHH
Confidence 999999999999999999999999999999999999999 999999999988775
|
|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-82 Score=774.98 Aligned_cols=460 Identities=45% Similarity=0.800 Sum_probs=434.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+|||||+|||++|++++++|+++|++++++++++|..+++.++||++|+++. . +..+|+|.+.|+++|+++++|+||
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~-~-~~~~y~d~~~i~~~a~~~~~D~I~ 78 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGA-D-PLAGYLNPRRLVNLAVETGCDALH 78 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCC-C-chhhhcCHHHHHHHHHHHCCCEEE
Confidence 58999999999999999999999999999999999999999999999999973 2 348899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||++|++.+++.|+++|++|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+||||
T Consensus 79 pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp 158 (472)
T PRK07178 79 PGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKA 158 (472)
T ss_pred eCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999874457899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+||++|++.+||.++++.+.+++...|++.++++|+||++++|+++++++|++|+++++++++|++++++++++
T Consensus 159 ~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~ 238 (472)
T PRK07178 159 TSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLI 238 (472)
T ss_pred CCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceE
Confidence 99999999999999999999999998888888888899999999989999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.+++|.+.+.+++++|||.|++++||++|++|++||||||||+|++|+++++++|+|++++++++++|+
T Consensus 239 e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~ 318 (472)
T PRK07178 239 EIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGL 318 (472)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCC
Confidence 99999889999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.|..+..+||||+|||++|||.++|.|+.|+|..+..|+++|||+|. .++.|+.|+++|||++||||+||+|
T Consensus 319 ~l~---~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~-~~~~g~~v~~~~d~~~~~vi~~g~~ 394 (472)
T PRK07178 319 PLS---YKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDT-AIYTGYTIPPYYDSMCAKLIVWALT 394 (472)
T ss_pred CCC---CccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEe-cccCCCEeCcccCCccceEEEEcCC
Confidence 875 456777889999999999999999999999999999999999999994 5789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHH
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKIL 523 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~ 523 (1427)
|++|+++|.++|++++|+|++||++||+++|.||+|++| +++|+||+++++|+...... +++....
T Consensus 395 ~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~-~~~~~~~ 460 (472)
T PRK07178 395 WEEALDRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSG-QFNTSFVESHPELTNYSIKR-KPEELAA 460 (472)
T ss_pred HHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCC-CccchhHhcChhhhcCcccc-CHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999998775544 5544443
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-80 Score=760.02 Aligned_cols=449 Identities=47% Similarity=0.823 Sum_probs=425.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+|||||+|||++|++++++|+++|+++|++|+++|..+++.++||++|+++.. +..+|+|.+.|+++|+++++|+||
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~--~~~~y~d~~~i~~~a~~~~iDaI~ 78 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTD--PIKGYLDVKRIVEIAKACGADAIH 78 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCC--chhcccCHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999999999999999999999999999999732 348899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcccc-CCCHHHHHHHHHhcCCcEEEe
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEP-VTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~-v~s~eea~~~a~~iGyPvVVK 214 (1427)
|||||++|+..+++.|++.|++|+||++++++.++||..+|++++++|||+||++... ..+.+++.++++++|||+|||
T Consensus 79 pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvK 158 (478)
T PRK08463 79 PGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILK 158 (478)
T ss_pred ECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999976322 357899999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++...|+++.+++|+||++++|+++++++|++|+++++++|+|+.++++|++
T Consensus 159 P~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~ 238 (478)
T PRK08463 159 ASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKV 238 (478)
T ss_pred eCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCce
Confidence 99999999999999999999999998888888889999999999998899999999999999999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
++.+|++.++++++++|.+.+.++++++||.|++|+||+++++|++||||||||+|++|+++|++||+|++++++++++|
T Consensus 239 ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G 318 (478)
T PRK08463 239 IEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG 318 (478)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcC
Confidence 99999988999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcC
Q psy15244 375 KSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 375 ~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
++++ +.+..+..+||||+|||++|||...|.|++|+|+.+..|.++++|+| .....|+.|+++|||++||+|++|.
T Consensus 319 ~~l~---~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d-~~~~~g~~v~~~~d~~la~~i~~g~ 394 (478)
T PRK08463 319 EILD---LEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGPSVRVD-SHIYKDYTIPPYYDSMLAKLIVKAT 394 (478)
T ss_pred CCCC---CccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCeeEe-ccccCCCEeCcccccceeEEEEECC
Confidence 9874 45666778899999999999999999999999999999989999999 4568899999999999999999999
Q ss_pred CHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhhhc
Q psy15244 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLER 511 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~~ 511 (1427)
|+++|++++.++|+++.|+|++||++||+++|.||+|++| +++|+||+++ ++|+..
T Consensus 395 ~r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~ 451 (478)
T PRK08463 395 SYDLAVNKLERALKEFVIDGIRTTIPFLIAITKTREFRRG-YFDTSYIETHMQELLEK 451 (478)
T ss_pred CHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCC-CccchhhhhCchhhccc
Confidence 9999999999999999999999999999999999999999 9999999999 677754
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-80 Score=756.16 Aligned_cols=448 Identities=43% Similarity=0.755 Sum_probs=424.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
++||||||+|||+++++++++|+++|+++++++++.|..+++.++||+.++++ +.....+|+|++.|+++|+++++|+|
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~-p~~~~~~y~d~~~i~~~a~~~~~daI 81 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIG-PSHAAKSYLNPAAILAAARQCGADAI 81 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecC-CCCccccccCHHHHHHHHHHhCCCEE
Confidence 56999999999999999999999999999999999998899999999999886 34456789999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
||||||++|++.+++.|++.|++|+||++++++.++||..+|++++++|||+||++...+.+.+++.++++++|||+|||
T Consensus 82 ~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvK 161 (467)
T PRK12833 82 HPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIK 161 (467)
T ss_pred EECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999986446889999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++...|+++.++||+||++++|++|++++|++ +++++++++|++|++++++
T Consensus 162 p~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki 240 (467)
T PRK12833 162 AAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKI 240 (467)
T ss_pred ECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccE
Confidence 999999999999999999999999998888888998999999999988999999999976 6889999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.+.+|++.++++.+++|.+.+.++++++||.|++|+||++++ +|++||||||||+|++|+++++++|+|++++++++++
T Consensus 241 ~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~ 320 (467)
T PRK12833 241 LEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIAD 320 (467)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHC
Confidence 999998889999999999999999999999999999999985 6889999999999999999999999999999999999
Q ss_pred CCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 374 GKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
|++++ +.+.++..+|||++|||++|||.++|.|++|+++.+.+|.++|+|++ .+++.|+.|+++|||++||||+||
T Consensus 321 G~~l~---~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d-~~~~~G~~v~~~~ds~l~~vi~~g 396 (467)
T PRK12833 321 GEPLR---FAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVD-SLLYPGYRVPPFYDSLLAKLIVHG 396 (467)
T ss_pred CCCCC---CCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEe-cceeCcCEeCCCcCcchheEEEEc
Confidence 99875 45677888999999999999999999999999999999999999999 567899999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhh
Q psy15244 454 ATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLL 509 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~ 509 (1427)
+|+++|++++.++|++++|+|++||++||+++|+||+|++| +++|+||+++ ++|+
T Consensus 397 ~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~ 452 (467)
T PRK12833 397 EDRAAALARAARALRELRIDGMKTTAPLHRALLADADVRAG-RFHTNFLEAWLAEWR 452 (467)
T ss_pred CCHHHHHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCC-CcccHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999 9999999987 4444
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-76 Score=775.67 Aligned_cols=440 Identities=42% Similarity=0.729 Sum_probs=413.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+|||||+|||++|++++++|+++|++++++++++|..+++..+||++++++ +....++|+|.+.|+++|+++++|+|||
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~-~~~~~~sy~d~e~Il~~a~~~~idaIiP 79 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLG-GAPAAESYLDIDKILAAAKKTGAQAIHP 79 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcC-CCCcccCCCCHHHHHHHHHHHCCCEEEe
Confidence 589999999999999999999999999999999999999999999999987 4455678999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
||||++|+..+++.|++.|++|+||++++++.++||..+|++|+++|||++|++ ..+.+.+++.++++++|||+||||.
T Consensus 80 G~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~ 158 (1201)
T TIGR02712 80 GYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKST 158 (1201)
T ss_pred CCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEEC
Confidence 999999999999999999999999999999999999999999999999998875 3678999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
.|+||+||++|++.+||.++++.+.+.+...|++..++|||||++++|+++++++|++|++++++++||+++++++++++
T Consensus 159 ~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~ve 238 (1201)
T TIGR02712 159 AGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVE 238 (1201)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEE
Confidence 99999999999999999999999988777778888999999999889999999999999999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
.+|++.++++.+++|.+.+.++++++||.|++|+||++++ +|++||||||||+|++|++++.++|+|++++++++++|+
T Consensus 239 e~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~ 318 (1201)
T TIGR02712 239 ETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGE 318 (1201)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCC
Confidence 9999889999999999999999999999999999999986 578999999999999999999999999999999999999
Q ss_pred CCccccccccCc--ccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 376 SLTELGLCQEKI--TPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 376 ~l~~l~l~q~~i--~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
+++ +.+... ...|+++++|+++|||.++|.|++|.++.+..|++ +|++ +++..|+.|+++||+++|+||++|
T Consensus 319 ~~~---~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~~--vrvd-~~v~~G~~V~~~~d~~la~vI~~g 392 (1201)
T TIGR02712 319 LPD---FASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPDD--VRVD-TWVETGTEVSPEYDPMLAKIIVHG 392 (1201)
T ss_pred CCC---ccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCCe--EEEe-ceecCCCEECCccCCCeEEEEEEE
Confidence 865 222222 46799999999999999999999999988877764 7888 578899999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 454 ATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
.|+++|++++.++|++++|+|+.||++||++||.||+|++| +++|+||++.
T Consensus 393 ~~r~eA~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~-~~~t~~l~~~ 443 (1201)
T TIGR02712 393 SDREDAILKLHQALAETRVYGIETNLDYLRSILSSETFRSA-QVSTRTLNSF 443 (1201)
T ss_pred CCHHHHHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCC-CccchhhhhC
Confidence 99999999999999999999999999999999999999999 9999999774
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-75 Score=715.63 Aligned_cols=444 Identities=46% Similarity=0.817 Sum_probs=421.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|||||||+|+|+++++++++|+++|+++++++++.|..+++..+||+.+.++ +....++|+|.+.|+++|++.++|+||
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~-~~~~~~~y~~~~~i~~~~~~~~~d~i~ 79 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIG-PASSKDSYLNIQNIISATVLTGAQAIH 79 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeC-CCChhhcccCHHHHHHHHHHcCCCEEE
Confidence 5899999999999999999999999999999999888899999999999986 445567899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||++|+..++..|+..|++|+||+++++..++||..+|++++++|||+||++...+.+.+++.++++++|||+||||
T Consensus 80 p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP 159 (447)
T PRK05586 80 PGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKA 159 (447)
T ss_pred cCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999853467899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|+++|++.+||.++++.+.+++...|+++.+++|+||++++|+++++++|++|+++++++++|+.+++++++.
T Consensus 160 ~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~ 239 (447)
T PRK05586 160 SAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVL 239 (447)
T ss_pred CCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceE
Confidence 99999999999999999999999998888778888899999999988999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.++++.+.+.+++++|||.|++++||++|++|++||+|||||++++|+++++++|+|++++++++++|+
T Consensus 240 ~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~ 319 (447)
T PRK05586 240 EEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGE 319 (447)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCC
Confidence 99998889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.+.++...||++++||++|+|...|.|.+|++..+..|.+.++|++. ....|+.++++|||++|+||++|+|
T Consensus 320 ~l~---~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~-~~~~g~~v~~~~~~~~~~vi~~g~~ 395 (447)
T PRK05586 320 KLS---IKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDS-AVYSGYTIPPYYDSMIGKLIVYGKD 395 (447)
T ss_pred CCC---CcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCCeEeec-cccCCCccCCccCchhheeEEEcCC
Confidence 875 445667788999999999999999999999999999999999999994 5678999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|++++.+||+++.|+|++||++||+++|.||+|++| +++|+||++|
T Consensus 396 ~~~a~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~ 444 (447)
T PRK05586 396 REEAIQKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKG-TYDTSFIEKK 444 (447)
T ss_pred HHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCC-ccccHHhHhh
Confidence 999999999999999999999999999999999999999 9999999875
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-74 Score=702.72 Aligned_cols=444 Identities=43% Similarity=0.790 Sum_probs=419.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|||||||+|+|+++++++++|+++|++++++++++|..+++..+||+++.++ +.....+|+|++.|+++|+++++|+||
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~-~~~~~~~y~d~~~l~~~a~~~~id~I~ 79 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIG-PAPSAKSYLNIPNIISAAEITGADAIH 79 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcC-CCCchhchhCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999998888889999999999986 334557899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|++|+++|++.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||
T Consensus 80 pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP 159 (449)
T TIGR00514 80 PGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKA 159 (449)
T ss_pred eCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999854467899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+||++|++.+||.++++.+.+++...++++.++||+||++++|++++++.|++|+++++++++|++++++++++
T Consensus 160 ~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~ 239 (449)
T TIGR00514 160 TAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLL 239 (449)
T ss_pred CCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceE
Confidence 99999999999999999999999888777667778899999999988999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.+++|.+.+.+++++|||.|++|+||+++++|++||||||||++++|++++.++|+|++++++++++|+
T Consensus 240 ~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~ 319 (449)
T TIGR00514 240 EEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGE 319 (449)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCC
Confidence 99998889999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ ..+..+..+|+|+++||++|||...|.|.+|.+..+..|.++|+|++ .+..+|+.++++|||++|+||++|+|
T Consensus 320 ~l~---~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~-~~~~~G~~v~~~~~~~lg~vi~~g~~ 395 (449)
T TIGR00514 320 PLS---LKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWD-SHVYSGYTVPPYYDSMIGKLITYGKT 395 (449)
T ss_pred CCC---CccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeec-cCccCCCEeCccccccceEEEEEcCC
Confidence 875 33556667899999999999999999999999999999999999999 56789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|++++.+||++++|+|++||++||+++|.||+|++| +++|+||++|
T Consensus 396 ~~ea~~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~-~~~t~~~~~~ 444 (449)
T TIGR00514 396 REVAIARMKRALSEFIIDGIKTTIPFHQRILEDENFQHG-GTNIHYLEKK 444 (449)
T ss_pred HHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCC-ceeehhHhhh
Confidence 999999999999999999999999999999999999999 9999999886
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=691.78 Aligned_cols=443 Identities=44% Similarity=0.782 Sum_probs=416.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+.||||||+|||+++++++++|+++|++++++++.+|..+++.++||+++.++ +....++|+|++.|+++|+++++|+|
T Consensus 2 ~~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~-~~~~~~~y~~~~~l~~~~~~~~~D~i 80 (445)
T PRK08462 2 KEIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIG-GAKSSESYLNIPAIISAAEIFEADAI 80 (445)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeC-CCchhcccCCHHHHHHHHHHcCCCEE
Confidence 34899999999999999999999999999999999999999999999999997 33445789999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
|||+|+++|+..+++.|+++|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+|||
T Consensus 81 ~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvK 160 (445)
T PRK08462 81 FPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILK 160 (445)
T ss_pred EECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999976446789999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++...++++.+++|+||++++|+++++++|.+|+++++++++|+.++++++.
T Consensus 161 P~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~ 240 (445)
T PRK08462 161 AAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKL 240 (445)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccce
Confidence 99999999999999999999999988877777788889999999998899999999998899999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
++.+|+..++++.+++|.+.+.++++++||.|++|+||+++++|++||||||||++++++++++++|+|++++++++++|
T Consensus 241 ~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G 320 (445)
T PRK08462 241 IEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEG 320 (445)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCC
Confidence 99999988999999999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred CCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcC
Q psy15244 375 KSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 375 ~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
++++. +.....+|+|+++|+++++|. .|.|.+|.+..+..|.+.++|++ .....|+.++++|||++|+||++|+
T Consensus 321 ~~l~~----~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~-~~~~~g~~v~~~~~~~lg~vi~~g~ 394 (445)
T PRK08462 321 EELPS----QESIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMD-SHAYAGYVVPPYYDSMIGKLIVWGE 394 (445)
T ss_pred CCccc----ccccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEc-cCcCCCCEeChhhccCccEEEEEcC
Confidence 98753 234457899999999999995 58999999999988988899999 4567899999999999999999999
Q ss_pred CHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
|+++|++++.+++++++|+|++|||+||+++|.||+|++| +++|+||++|
T Consensus 395 ~~~ea~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 444 (445)
T PRK08462 395 DRNRAIAKMKRALKEFKVEGIKTTIPFHLEMMENADFINN-KYDTKYLEEH 444 (445)
T ss_pred CHHHHHHHHHHHHHhcEEECccCCHHHHHHHhcChhhcCC-ceechhhhhc
Confidence 9999999999999999999999999999999999999999 9999999876
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-71 Score=676.95 Aligned_cols=444 Identities=45% Similarity=0.824 Sum_probs=417.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|||||||+|+|+++++++++|+++|+++++++++.|..+++.++||+.+.++ +....++|+|.+.|+++|+++++|+|+
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~-~~~~~~~y~d~~~l~~~a~~~~id~I~ 79 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIG-PAPSKKSYLNIPAIISAAEITGADAIH 79 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeC-CCCcccccCCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999999888888999999999876 334457899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|++|+++|+..++..|++.|++|+||+++++..++||..+|++++++|||+||++...+.+.+++.++++.+|||+||||
T Consensus 80 p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP 159 (451)
T PRK08591 80 PGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKA 159 (451)
T ss_pred ECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999753367899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|+++|++.+||.++++.+..++...++++.+++|+||++++|+++++++|++|+++++++++|+.++++++..
T Consensus 160 ~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~ 239 (451)
T PRK08591 160 TAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVL 239 (451)
T ss_pred CCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEE
Confidence 99999999999999999999999988877777888899999999988999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.+++|.+.+.++++++||.|++|+||+++++|++||||||||++++|++++.++|+|++++++++++|+
T Consensus 240 ~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~ 319 (451)
T PRK08591 240 EEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGE 319 (451)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCC
Confidence 99998889999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ ..+.....+|+|+++||++|+|...|.|.+|.+..+..|.++++|++ .....|+.+++++||++|+|+++|+|
T Consensus 320 ~l~---~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~-~~~~~g~~v~~~~~~~lg~vi~~g~~ 395 (451)
T PRK08591 320 PLS---IKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVD-SAVYTGYTIPPYYDSMIGKLIVHGET 395 (451)
T ss_pred CCC---CcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCCCCCeeec-ccccCCCCcCccccCcceEEEEEcCC
Confidence 875 23445567899999999999999999999999999999999999998 45678999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|++++.++|++++|+|++||++||++||.||+|++| +++|+||+++
T Consensus 396 ~~~~~~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~-~~~t~~~~~~ 444 (451)
T PRK08591 396 REEAIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAG-DYNIHYLEKK 444 (451)
T ss_pred HHHHHHHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCC-CcccHHHHhh
Confidence 999999999999999999999999999999999999999 9999999887
|
|
| >KOG0368|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=650.90 Aligned_cols=444 Identities=33% Similarity=0.555 Sum_probs=405.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHc---------CCEEEEEecCCC--ccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEM---------GIKSVGIYSEQD--KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~el---------Gi~~vav~s~~d--~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
+.++||||||.|-.|+..+|+.|+- -++.|++.+++| .++.+.++||+.+.+| +...-..|.|++.|+
T Consensus 52 rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevP-gGtNnNNyANVdlIv 130 (2196)
T KOG0368|consen 52 RVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVP-GGTNNNNYANVDLIV 130 (2196)
T ss_pred ceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCC-CCCCCCCcccHHHHH
Confidence 6689999999999999999999874 355666666655 4677889999988887 667788999999999
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc------------
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTT------------ 191 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~------------ 191 (1427)
++|++..+|||++|||..||||.+.+++.+.||.|+||+..+|..+|||...--+++.+|||+.||+.
T Consensus 131 diAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~ 210 (2196)
T KOG0368|consen 131 DIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKT 210 (2196)
T ss_pred HHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ------------ccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeec
Q psy15244 192 ------------EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYI 259 (1427)
Q Consensus 192 ------------~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyI 259 (1427)
+.+.+.+|..+.++.+|||+|||++.||||+|+|.|++.||+...|+++..| +.+.++|+.+..
T Consensus 211 ~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlMK~a 286 (2196)
T KOG0368|consen 211 NLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLMKLA 286 (2196)
T ss_pred CeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeeeecc
Confidence 2356889999999999999999999999999999999999999999998876 447899999999
Q ss_pred cCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CC
Q psy15244 260 DRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DD 338 (1427)
Q Consensus 260 eggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG 338 (1427)
.+.||+|||+++|.+|+++.++.||||+||||||++|++|+...+.+..++|.+.|+++++.+||.+++|||+++.+ +|
T Consensus 287 ~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~ 366 (2196)
T KOG0368|consen 287 DQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG 366 (2196)
T ss_pred cCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999997 89
Q ss_pred cEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcccc-------c-----------cccCcccceEEEEEEeec
Q psy15244 339 NFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELG-------L-----------CQEKITPQGCAIQCHLRT 400 (1427)
Q Consensus 339 ~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~-------l-----------~q~~i~~~g~ai~~ri~a 400 (1427)
+|||+|.|||+|+|||.||+++|+||..+|+++|+|.||..++ + .+..+.++||+|.|||+.
T Consensus 367 ~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITs 446 (2196)
T KOG0368|consen 367 EYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITS 446 (2196)
T ss_pred cEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeec
Confidence 9999999999999999999999999999999999999997552 1 123457899999999999
Q ss_pred CCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc-cccCH
Q psy15244 401 EDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTNL 479 (1427)
Q Consensus 401 edp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G-v~tni 479 (1427)
|||..+|.|++|+|..+..++...+- ....+..|..|..+-||.+|+++++|+||++|++.|.-||+++.||| .+|++
T Consensus 447 EdPddgFkPSsG~v~eLnFrSssnvW-gYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT~V 525 (2196)
T KOG0368|consen 447 EDPDDGFKPSSGTVQELNFRSSSNVW-GYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTV 525 (2196)
T ss_pred cCCCCCcCCCCCeeEEeccCCCCCee-EEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCchH
Confidence 99999999999999987665544332 11335678889999999999999999999999999999999999999 79999
Q ss_pred HHHHhhcCCcccccCCccccccccCc
Q psy15244 480 PFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 480 ~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+||.+||...+|.++ .++|+|+|+.
T Consensus 526 eYLI~LLet~dF~~N-~i~TgWLD~~ 550 (2196)
T KOG0368|consen 526 EYLIDLLETEDFESN-KIDTGWLDKR 550 (2196)
T ss_pred HHHHHHHHhhhhhhc-cCcchhHHHH
Confidence 999999999999999 9999999875
|
|
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=586.27 Aligned_cols=443 Identities=43% Similarity=0.788 Sum_probs=404.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|+|+++++++++|+++|+++++++++.+..+.+..+||+.+.++ +.....+|.|.+.|+++|+++++|+|+
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~-~~~~~~~~~d~~~l~~~~~~~~id~I~ 79 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIG-GPRVQESYLNLEKIIEIAKKTGAEAIH 79 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcC-CCCccccccCHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999999999988888888888999999886 333356889999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|++|+++|+..++..++..|++++||++++++.++||..+|++|+++|||+||+....+.+.+++.++++.+|||+||||
T Consensus 80 p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP 159 (450)
T PRK06111 80 PGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKA 159 (450)
T ss_pred eCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEe
Confidence 99999999998999999999999999999999999999999999999999999732256899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
+.|+||+|+++|++.+||.++++.+..++...++++++++|+||++++|++++++.+++|+++.++.++|+.++++++..
T Consensus 160 ~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 239 (450)
T PRK06111 160 SAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVI 239 (450)
T ss_pred CCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceE
Confidence 99999999999999999999999876665556777899999999988999999999988999999999999998888888
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.++++.+.+.++++++||.|++|+||+++++|++||||||||+++++++++.++|+|++++++++++|+
T Consensus 240 ~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~ 319 (450)
T PRK06111 240 EEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGE 319 (450)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCC
Confidence 88898888999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ ..+......++++..+++++++. .+.|..|.+..+..+...+++++ .+...|+.+++.+++++|+|+++|.|
T Consensus 320 ~l~---~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~-~~~~~G~~v~~~~~~~lg~vi~~g~~ 394 (450)
T PRK06111 320 KLS---FTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHD-HAVENGVTVTPFYDPMIAKLIAHGET 394 (450)
T ss_pred CCC---CccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCCCCCEEEE-ecccCCCEeChhhcccceEEEEEeCC
Confidence 875 33445566788999999998874 46789999877766666778876 45678999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|.+++.++++.++|+|++||+++|+.+|.||+|++| .++|+|++..
T Consensus 395 ~~ea~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 443 (450)
T PRK06111 395 REEAISRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAG-GYTTGFLTKQ 443 (450)
T ss_pred HHHHHHHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCC-cccchHHhhh
Confidence 999999999999999999999999999999999999999 9999999664
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=548.00 Aligned_cols=333 Identities=20% Similarity=0.236 Sum_probs=308.9
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+|||||||+|++ ++.|++++|++|++.|++ +||+.||+|.++ .++++|+.++.+++..++..+
T Consensus 2 ~~~v~I~DtTLRDG~Q~~-~~~~s~e~k~~ia~~L~~--~GV~~IE~G~p~--------~~~~~~e~i~~i~~~~~~~~i 70 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTP-GVVFTNEEKLAIARMLDE--IGVDQIEAGFPA--------VSEDEKEAIKAIAKLGLNASI 70 (378)
T ss_pred CCeeEEEeCCCCccCcCC-CCCCCHHHHHHHHHHHHH--hCCCEEEEeCCC--------cChHHHHHHHHHHhcCCCeEE
Confidence 567999999999999998 589999999999999999 799999998665 477889999999988888888
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~ 801 (1427)
.+|.|+ ..+++++|.++|++.+++|.++||+ +++..+++++++.|. .+.+
T Consensus 71 ~~~~r~-------------~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~---~v~~ 134 (378)
T PRK11858 71 LALNRA-------------VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL---YVSF 134 (378)
T ss_pred EEEccc-------------CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEE
Confidence 888875 3556999999999999999999996 567789999999998 5543
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
+ ++|.++++++|+.++++.+.++|+++|+||||+|.++|.+++++|+.+++.+ +++|++|+|||+|||+||
T Consensus 135 ----~----~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN 205 (378)
T PRK11858 135 ----S----AEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATAN 205 (378)
T ss_pred ----E----eccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHH
Confidence 2 5678899999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhh
Q psy15244 882 TLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHD 960 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~ 960 (1427)
+++|+++||++||+|++|||||+||++||+++++|+. .|+++++|+++|.++++++++.+|+++|++||+||.|+|+|+
T Consensus 206 ~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~ 285 (378)
T PRK11858 206 ALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHE 285 (378)
T ss_pred HHHHHHcCCCEEEEeeccccccccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhh
Confidence 9999999999999999999999999999999999994 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 961 VCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 961 ~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+|+|.+++.|++..|+||+ |+..|..++++++++||.. +++..|+++|+ ..+++.+.+.+|++.
T Consensus 286 sGiH~~gi~k~~~~Ye~~~-P~~vG~~~~~~~g~~SG~~--~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 351 (378)
T PRK11858 286 SGIHVDGVLKNPLTYEPFL-PEEVGLERRIVLGKHSGRH--ALKNKLKEYGIELSREELCELLEKVKEL 351 (378)
T ss_pred ccccHHHHhCCcccccccC-HHHcCCcccccccccccHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999 7788889999999999985 89999999999 667888888888875
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=541.94 Aligned_cols=331 Identities=18% Similarity=0.232 Sum_probs=305.8
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
.|.|+|||||||+|++ +++|++++|++|++.|++ +||+.||+|.++ .++++|+.++.+++..++..+.+
T Consensus 1 ~v~i~D~TLRDG~Q~~-~~~~s~~~k~~ia~~L~~--~Gv~~IEvG~p~--------~~~~~~e~i~~i~~~~~~~~i~~ 69 (365)
T TIGR02660 1 PVIINDTTLRDGEQAP-GVAFTAAEKLAIARALDE--AGVDELEVGIPA--------MGEEERAVIRAIVALGLPARLMA 69 (365)
T ss_pred CcEEEeCCCCCcCcCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCC--------CCHHHHHHHHHHHHcCCCcEEEE
Confidence 3789999999999998 489999999999999999 899999998665 36788999999999999999999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEEEE
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEATI 803 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~~i 803 (1427)
|.|+. .+.++.|.++|++.+++|.++|+. +++..+++++++.|. .+.
T Consensus 70 ~~r~~-------------~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~---~v~--- 130 (365)
T TIGR02660 70 WCRAR-------------DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL---FVS--- 130 (365)
T ss_pred EcCCC-------------HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC---EEE---
Confidence 98862 456899999999999999999984 456688999999998 544
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 804 ~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
+ ++++.++++++|++++++++.++|+++|+||||+|.++|.+++++|+.+++.+ +++|++|+|||+|||+||++
T Consensus 131 -~----~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~v~l~~H~HNd~GlA~ANal 204 (365)
T TIGR02660 131 -V----GGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAV-DLPLEMHAHNDLGMATANTL 204 (365)
T ss_pred -E----eecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHH
Confidence 2 26788899999999999999999999999999999999999999999999998 69999999999999999999
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH-HhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHH
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCL-ENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVC 962 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L-~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~ 962 (1427)
+|+++||++||+|++|||||+||++||+++++| ...|+++++|+++|.++++++++.+|+++++++|++|.|+|+|++|
T Consensus 205 aA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sG 284 (365)
T TIGR02660 205 AAVRAGATHVNTTVNGLGERAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESG 284 (365)
T ss_pred HHHHhCCCEEEEEeeccccccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccc
Confidence 999999999999999999999999999999999 5679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 963 DYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 963 ~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+|++++.|++..|+||+ |+..|..+++++++++|.. +++..|+++|+ ..+++.+.+.+|++.
T Consensus 285 iH~~~i~k~~~~Ye~~~-P~~vG~~~~~~i~~~SG~~--~i~~~l~~~g~~~~~~~~~~~~~~vk~~ 348 (365)
T TIGR02660 285 IHVDGLLKDPRTYEPFD-PELVGRSRRIVIGKHSGRA--ALINALAQLGIPLSEEEAAALLPAVRAF 348 (365)
T ss_pred hhHHHHhCCcccCCCcC-HHHcCCeeEEEeEchhhHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 7888889999999999975 89999999999 667788888888765
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=538.20 Aligned_cols=330 Identities=18% Similarity=0.229 Sum_probs=305.2
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMI 738 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml 738 (1427)
|.|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|.++. ++++|+.++.+.+..+++.+++|
T Consensus 1 i~i~DtTLRDG~Q~~-~~~~s~~~k~~ia~~L~~--~Gv~~IEvG~p~~--------~~~~~e~i~~i~~~~~~~~v~~~ 69 (363)
T TIGR02090 1 VYIFDTTLRDGEQTP-GVSLTVEQKVEIARKLDE--LGVDVIEAGFPIA--------SEGEFEAIKKISQEGLNAEICSL 69 (363)
T ss_pred CEEEeCCCCCcCCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------ChHHHHHHHHHHhcCCCcEEEEE
Confidence 579999999999997 589999999999999999 8999999987643 67899999999999999999999
Q ss_pred ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEE
Q psy15244 739 LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATIC 804 (1427)
Q Consensus 739 ~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~ 804 (1427)
+|+ ..+++++|.++|++.+++|.++||++ .+..+++++++.|. .++.++
T Consensus 70 ~r~-------------~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~---~v~~~~- 132 (363)
T TIGR02090 70 ARA-------------LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL---IVEFSA- 132 (363)
T ss_pred ccc-------------CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---EEEEEE-
Confidence 985 24569999999999999999999874 45678889999998 665432
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 805 YAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 805 ~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
+++++++++|+.++++++.++|+++|+||||+|.++|.+++++|+.+++.+ +++|++|+|||+|||+||+++
T Consensus 133 -------eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~-~~~l~~H~Hnd~GlA~AN~la 204 (363)
T TIGR02090 133 -------EDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENV-KLPISVHCHNDFGLATANSIA 204 (363)
T ss_pred -------eecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhccc-CceEEEEecCCCChHHHHHHH
Confidence 355699999999999999999999999999999999999999999999998 499999999999999999999
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCD 963 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~ 963 (1427)
|+++||++||+|++|||+|+||++||+++++|+. .|+++++|+++|.++++++++.+|+++|++||++|.|+|+|++|+
T Consensus 205 A~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGi 284 (363)
T TIGR02090 205 GVKAGAEQVHVTVNGIGERAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGI 284 (363)
T ss_pred HHHCCCCEEEEEeeccccccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcch
Confidence 9999999999999999999999999999999997 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 964 YSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 964 ~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
|.+++.|++..|+||+ |+..|..+++++++++|.. +++..++++|+ ..+++.+.+.+|++.
T Consensus 285 H~~~i~k~~~~Ye~~~-P~~vG~~~~~~~g~~SG~~--~i~~~l~~~g~~~~~~~~~~~~~~vk~~ 347 (363)
T TIGR02090 285 HVDGVIENPLTYEPIS-PEVVGNKRRIILGKHSGRH--AVEAKLKELGIKVTDEQLKEILKRIKEI 347 (363)
T ss_pred hHHHHcCCcccCCCCC-HHHcCCcceeechhhccHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999 7888889999999999985 89999999999 667788888888876
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=546.54 Aligned_cols=335 Identities=19% Similarity=0.240 Sum_probs=305.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|.|+|||||||+|++. ..|++++|++|++.|++ +||+.||+|.++ .++.+|+.++.+.+..+++.+
T Consensus 2 ~~~v~I~DtTLRDG~Q~~g-~~~s~e~K~~ia~~L~~--~Gv~~IE~G~p~--------~s~~d~~~v~~i~~~~~~~~i 70 (513)
T PRK00915 2 MDRVIIFDTTLRDGEQSPG-ASLTVEEKLQIAKQLER--LGVDVIEAGFPA--------SSPGDFEAVKRIARTVKNSTV 70 (513)
T ss_pred CCCcEEEECCCCcCCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEcCCC--------CChHHHHHHHHHHhhCCCCEE
Confidence 3579999999999999996 78999999999999999 899999998764 377889999999988899999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHH----hcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCc
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLAS----QAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGST 797 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~----~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~ 797 (1427)
++|+|+. ...++++. ++|.+++++|.+.||++ .+..+++++++.|.
T Consensus 71 ~a~~r~~-------------~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~--- 134 (513)
T PRK00915 71 CGLARAV-------------KKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTD--- 134 (513)
T ss_pred EEEccCC-------------HHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---
Confidence 9999864 22355555 78999999999999986 34678889999998
Q ss_pred EEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC---ceEEEeecCC
Q psy15244 798 IVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN---ILIHVHTHDM 874 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~---ipi~~H~Hnd 874 (1427)
.+ +|+ ++|.++++++|+.++++.+.++||++|+||||+|.++|.+++++|+.+++.+|+ ++|++|||||
T Consensus 135 ~v----~f~----~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND 206 (513)
T PRK00915 135 DV----EFS----AEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHND 206 (513)
T ss_pred eE----EEE----eCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCC
Confidence 54 333 788889999999999999999999999999999999999999999999999975 9999999999
Q ss_pred cchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC----CCCCCCChhhHHHHHHHHHHHhCCCCCCCCc
Q psy15244 875 AGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT----DKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~----g~~tgidl~~L~~l~~~v~~~~g~~~~~~kp 950 (1427)
+|||+||+++|++|||++||+|++|||||+||++||+++++|+.. |+++++|+++|.++++++++.+|+++|+++|
T Consensus 207 ~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~P 286 (513)
T PRK00915 207 LGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKA 286 (513)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999999999999999865 8999999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCc-ccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 951 LWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAAS-SEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 951 ivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~-~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+||.|+|+|++|+|++++.|++..|+||+ |+..|.. ++++++++||.. ++...|+++|+ ..+++.+.+.+|+++
T Consensus 287 ivG~~aF~h~sGiH~dgi~k~~~~Ye~~~-Pe~vG~~~~~i~lg~~SG~~--~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 363 (513)
T PRK00915 287 IVGANAFAHESGIHQDGVLKNRETYEIMT-PESVGLKANRLVLGKHSGRH--AFKHRLEELGYKLSDEELDKAFERFKEL 363 (513)
T ss_pred ccChhHHHhccchhHHHHcCCcccccccC-HHHcCCcceEEEeccccCHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7777777 799999999984 99999999999 666788888888775
Q ss_pred c
Q psy15244 1028 L 1028 (1427)
Q Consensus 1028 l 1028 (1427)
-
T Consensus 364 ~ 364 (513)
T PRK00915 364 A 364 (513)
T ss_pred H
Confidence 3
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=538.46 Aligned_cols=331 Identities=19% Similarity=0.249 Sum_probs=303.5
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
+|.|+|||||||+|++ +..|++++|++|++.|++ +||+.||+|.++. ++.+|+.++.+.+...+..+.+
T Consensus 2 ~i~I~DtTLRDG~Q~~-g~~~s~e~K~~ia~~L~~--~Gv~~IE~G~p~~--------~~~d~e~v~~i~~~~~~~~i~a 70 (488)
T PRK09389 2 MVRILDTTLRDGEQTP-GVSLTPEEKLEIARKLDE--LGVDVIEAGSAIT--------SEGEREAIKAVTDEGLNAEICS 70 (488)
T ss_pred ceEEEeCCCCCcCCCC-CCCcCHHHHHHHHHHHHH--cCCCEEEEeCCcC--------CHHHHHHHHHHHhcCCCcEEEe
Confidence 4899999999999997 589999999999999999 8999999987653 6788999999998888889999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEE
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATI 803 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i 803 (1427)
|+|+. .++++++.++|++.+++|.+.|+++ .+..+++++++.|. .++..
T Consensus 71 ~~r~~-------------~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~---~v~~~- 133 (488)
T PRK09389 71 FARAV-------------KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL---IVELS- 133 (488)
T ss_pred ecccC-------------HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---EEEEE-
Confidence 99862 5569999999999999999999984 44567788888888 66543
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 804 ~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
.++.++++++|+.++++.+.++|+++|+||||+|.++|.+++++++.|++.+ ++||++|||||+|||+||++
T Consensus 134 -------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~-~v~l~~H~HND~GlAvANal 205 (488)
T PRK09389 134 -------GEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELV-KGPVSIHCHNDFGLAVANTL 205 (488)
T ss_pred -------EeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhc-CCeEEEEecCCccHHHHHHH
Confidence 2356799999999999999999999999999999999999999999999988 69999999999999999999
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHH
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVC 962 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~ 962 (1427)
+|++|||++||+|++|||||+||++||+++++|+.. |+++++|++.|.++++++++.+|+++|+|+|+||.|+|+|++|
T Consensus 206 aAv~aGa~~Vd~Ti~GiGERaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sG 285 (488)
T PRK09389 206 AALAAGADQVHVTINGIGERAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESG 285 (488)
T ss_pred HHHHcCCCEEEEEcccccccccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcch
Confidence 999999999999999999999999999999999974 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 963 DYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 963 ~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
+|++++.|++..|+||+ |+..|..++++++++||.. +++..|+++|+ ..+++.+.+.+++++
T Consensus 286 iH~dgi~k~~~~Ye~~~-P~~vG~~~~~~lg~~SG~~--~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 349 (488)
T PRK09389 286 IHVDGLLKDTETYEPIT-PETVGRERRIVLGKHAGRA--ALKAALKEMGIEVSDDQLNEIVSRVKEL 349 (488)
T ss_pred hhHHHHhCCcccCCCCC-HHHcCCcccccccccccHH--HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 7788888999999999985 89999999999 666777888887763
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=530.94 Aligned_cols=338 Identities=18% Similarity=0.181 Sum_probs=297.4
Q ss_pred ccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC-
Q psy15244 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN- 732 (1427)
Q Consensus 654 ~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~- 732 (1427)
.+.++|.|+|||||||+|++. ..|++++|++||+.|++ +|++.||+|.++. ++..++.++.+.+..++
T Consensus 80 ~~~~~V~I~DtTLRDGeQ~~g-v~fs~eeKi~Ia~~L~~--~GVd~IEvG~Pa~--------s~~e~e~i~~i~~~~~~~ 148 (503)
T PLN03228 80 PDKNYVRVLDTTLRDGEQSPG-GSLTPPQKLEIARQLAK--LRVDIMEVGFPGS--------SEEEFEAVKTIAKTVGNE 148 (503)
T ss_pred CCCCCeEEEeCCCCCCCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHHhcccc
Confidence 346789999999999999985 78999999999999999 8999999987764 34456667778766543
Q ss_pred --------CceeeeecccccccccCCCcchHHHHHHHHHhc----CCCEEEEeccCChHH--------------HHHHHH
Q psy15244 733 --------IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQA----GIDIFRVFDPLNSVP--------------NLVKGM 786 (1427)
Q Consensus 733 --------~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~----Gid~~rif~~~nd~~--------------~~~~~i 786 (1427)
..+..|.|. .++++++|.++ |++++.+|.+.|+++ .+..++
T Consensus 149 ~~~~~~l~~~i~a~~R~-------------~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V 215 (503)
T PLN03228 149 VDEETGYVPVICGIARC-------------KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSI 215 (503)
T ss_pred cccccccceEEeeeccc-------------CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334455554 23457788777 788999999999887 236688
Q ss_pred HHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC---
Q psy15244 787 DAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP--- 863 (1427)
Q Consensus 787 ~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p--- 863 (1427)
++|++.|. . .+. |++||+++++++|+.++++++.++||++|+||||+|+++|.+++++|+.+++.+|
T Consensus 216 ~~Ak~~G~---~---~v~----f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~ 285 (503)
T PLN03228 216 RYAKSLGF---H---DIQ----FGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGID 285 (503)
T ss_pred HHHHHcCC---c---eEE----eccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 89999887 3 122 3488999999999999999999999999999999999999999999999999986
Q ss_pred CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------CCCCCCCChhhHHHHHHHH
Q psy15244 864 NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------TDKRCGIDLHDVCDYSSYW 937 (1427)
Q Consensus 864 ~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~g~~tgidl~~L~~l~~~v 937 (1427)
+++|++|||||+|||+||+++|++|||++||+|++|||||+||++||+|+++|+. .|+++++|++.|.++++++
T Consensus 286 ~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V 365 (503)
T PLN03228 286 DIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGIGERSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMV 365 (503)
T ss_pred CceeEecccCCcChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999987 3788999999999999999
Q ss_pred HHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcC----cccEEEecCCCccHHHHHHHHHHCCC-
Q psy15244 938 RKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAA----SSEAYLYEIPGGQYTNLKFRTMSFGL- 1012 (1427)
Q Consensus 938 ~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~----~~~v~~~~~pGg~~snl~~ql~~~gl- 1012 (1427)
++++|+++++|||+||.|+|+|++|+|++++.|++..|+||+ |+..|. .+++++++++|.. +++..|+++|+
T Consensus 366 ~~~~g~~i~~~kPivG~naF~heSGIH~dgilK~p~tYe~~~-Pe~vG~~~~~~~~i~lgk~SG~~--av~~~l~~lG~~ 442 (503)
T PLN03228 366 QEYTGMYVQPHKPIVGANCFVHESGIHQDGILKNRSTYEILS-PEDIGIVKSQNSGIVLGKLSGRH--AVKDRLKELGYE 442 (503)
T ss_pred HHHhCCCCCCCCCcccHHHHHhccchhHHHHhCCcccccCCC-HHHhCCcccccceeecchHhhHH--HHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999 666663 6789999999974 89999999999
Q ss_pred -CHHHHHHHHHHHHHHc
Q psy15244 1013 -DFEDVKRAYRTANFLL 1028 (1427)
Q Consensus 1013 -~~~ev~~~~~~v~~~l 1028 (1427)
..+++.+.+.++++..
T Consensus 443 ~~~~~~~~l~~~vk~~a 459 (503)
T PLN03228 443 LDDEKLNEVFSRFRDLT 459 (503)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 7788888998888763
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-55 Score=531.91 Aligned_cols=332 Identities=17% Similarity=0.203 Sum_probs=298.8
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
+|.|+|||||||+|++. ..|++++|++|++.|++ +|++.||+|.++. ++.+++.++.+++..++..+++
T Consensus 1 ~v~I~DtTLRDG~Q~~g-~~~s~e~K~~ia~~L~~--~GV~~IEvG~p~~--------s~~d~e~v~~i~~~~~~~~i~a 69 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPG-ASLTVEEKLQIALALER--LGVDIIEAGFPVS--------SPGDFEAVQRIARTVKNPRVCG 69 (494)
T ss_pred CeEEEECCCCccCcCCC-CCcCHHHHHHHHHHHHH--cCCCEEEEECCCC--------CHHHHHHHHHHHHhCCCCEEEE
Confidence 47999999999999986 78999999999999999 7999999987664 4567888999988889899999
Q ss_pred eecccccccccCCCcchHHHHHHHHHhc----CCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEE
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQA----GIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~----Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v 799 (1427)
|.|+. ...++++.++ +.+++++|.+.|+++ .+..+++++++.|. .+
T Consensus 70 l~r~~-------------~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~---~v 133 (494)
T TIGR00973 70 LARCV-------------EKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD---DV 133 (494)
T ss_pred EcCCC-------------HHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eE
Confidence 98863 3446777766 788999999999876 34567888888887 43
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC---CceEEEeecCCcc
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP---NILIHVHTHDMAG 876 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p---~ipi~~H~Hnd~G 876 (1427)
.| ++||+++++++|+.++++.+.++||++|+||||+|.++|.+++++|+.+++++| +++|++|||||+|
T Consensus 134 ----~f----~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 205 (494)
T TIGR00973 134 ----EF----SCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLG 205 (494)
T ss_pred ----EE----EcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCC
Confidence 33 388999999999999999999999999999999999999999999999999987 4789999999999
Q ss_pred hHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccc
Q psy15244 877 TGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN----TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~----~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpiv 952 (1427)
||+||+++|++|||++||+|++|||||+||++||+|+++|+. .|+++++|++.|.++++++++.+|+++|+|||+|
T Consensus 206 lAvANalaAv~aGa~~vd~tv~GlGERaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~Piv 285 (494)
T TIGR00973 206 LAVANSLAAVQNGARQVECTINGIGERAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIV 285 (494)
T ss_pred hHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 999999999999999999999999999999999999999984 3889999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCc-CcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 953 RCGIDLHDVCDYSSYWRKVRELYAPFECTDLKA-ASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 953 G~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g-~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
|.|+|+|++|+|++++.|++..|+||+ |+..| ..++++++++||.. ++...|+++|+ ..+++.+.+.+|+++
T Consensus 286 G~~aF~h~sGiH~dgi~k~~~~Ye~~~-Pe~vG~~~~~i~lg~~SG~~--~i~~~l~~~g~~l~~~~~~~~~~~vk~~ 360 (494)
T TIGR00973 286 GDNAFAHESGIHQDGVLKNKETYEIMS-PEDIGLTAEQLVLGKHSGRH--AFKDRLEELGFKLDDEELDKLFEKFKEL 360 (494)
T ss_pred cHhHHHhccchhHHHHhCCcccccCCC-HHHcCCcceeEEecccccHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 66666 45689999999984 99999999999 556688888888775
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=532.92 Aligned_cols=359 Identities=19% Similarity=0.173 Sum_probs=304.2
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHh-CCCCc
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELREL-IPNIP 734 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~-~p~~~ 734 (1427)
+++|+|+|||||||+|++. ++|++++|++|++.|++ +||+.||+|.|+. +++..+.++.+.+. +.+..
T Consensus 3 ~~~V~I~DtTLRDG~Q~~g-~~~s~e~Kl~ia~~L~~--~Gvd~IEvG~p~a--------s~~d~~~~~~i~~~~l~~~~ 71 (524)
T PRK12344 3 MERIELYDTTLRDGAQGEG-ISFSVEDKLRIARKLDE--LGVDYIEGGWPGS--------NPKDTEFFKRAKELKLKHAK 71 (524)
T ss_pred CCceEEEeCCCCCcCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEcCCcC--------ChhHHHHHHHHHHhCCCCcE
Confidence 4679999999999999995 89999999999999999 8999999965432 23334445555543 35788
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEE
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+..|.|... -++..+. +..++.+.++|++++++|.+.|++| ++..+++++++.|. .++
T Consensus 72 i~~~~~~~~-~~i~~~~----d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~---~v~ 143 (524)
T PRK12344 72 LAAFGSTRR-AGVSAEE----DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGR---EVI 143 (524)
T ss_pred EEEEeeccc-cCCCccc----HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC---eEE
Confidence 888887532 2333222 2347888999999999999999764 56688999999998 654
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A 880 (1427)
+. ..+++ |+++++++|++++++++.++|+++|+||||+|+++|.+++++|+.+++++ +++|++|||||+|||+|
T Consensus 144 ~~---~e~~~--Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~A 217 (524)
T PRK12344 144 FD---AEHFF--DGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVA 217 (524)
T ss_pred Ec---ccccc--ccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHH
Confidence 32 11111 46689999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CC--CCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchh
Q psy15244 881 TTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TD--KRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGID 957 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g--~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f 957 (1427)
|+++|++|||++||+|++|||||+||++||+|+++|.. .| .+|++|++.|.++++++++++|+++++|+|+||.|+|
T Consensus 218 NslaAi~aGa~~Vd~Tl~GlGERaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F 297 (524)
T PRK12344 218 NSLAAVEAGARQVQGTINGYGERCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAF 297 (524)
T ss_pred HHHHHHHhCCCEEEEecccccccccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchh
Confidence 99999999999999999999999999999999999975 46 4589999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCC----HHHHHHHHHHHHHH--cCCC
Q psy15244 958 LHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD----FEDVKRAYRTANFL--LGDI 1031 (1427)
Q Consensus 958 ~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~----~~ev~~~~~~v~~~--lG~~ 1031 (1427)
+|++|+|++++.|++..|+||+ |+..|.+++++++++||. ++++.+|+++|+. .+++.+.+.++++. .|+
T Consensus 298 ~h~SGiH~dgi~k~~~~Ye~~~-P~~vG~~~~i~lg~~SG~--~~i~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~~~- 373 (524)
T PRK12344 298 AHKGGIHVSAVLKDPRTYEHID-PELVGNRRRVLVSELAGR--SNILAKAKELGIDLDKDDPRLKRLLERIKELEAEGY- 373 (524)
T ss_pred hhhccccHHHHhCCcccccCCC-HHHhCCcccccccchhhH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999 777788999999999996 6999999999993 45577777777654 334
Q ss_pred CccccchhhHHHHHHHHHH
Q psy15244 1032 IKCTPSSKVVADLAIFMTQ 1050 (1427)
Q Consensus 1032 ~~vTP~sq~vg~~a~~~v~ 1050 (1427)
+|.+.+|.|++.
T Consensus 374 -------~~~~~~~~~~~~ 385 (524)
T PRK12344 374 -------QFEAAEASFELL 385 (524)
T ss_pred -------EEechHHHHHHH
Confidence 666677766554
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=535.60 Aligned_cols=346 Identities=15% Similarity=0.160 Sum_probs=303.7
Q ss_pred cccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHH
Q psy15244 645 GAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLA 724 (1427)
Q Consensus 645 ~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~ 724 (1427)
-|+.+...+++.++|.|+|||||||+|++. ..|++++|++|++.|++ +||+.||++.+ +.++++|+.++
T Consensus 73 ~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~g-~~~s~eeKl~Ia~~L~~--lGVd~IEvGfP--------~~Sp~D~e~vr 141 (632)
T PLN02321 73 RPEYIPNRIDDPNYVRIFDTTLRDGEQSPG-ATLTSKEKLDIARQLAK--LGVDIIEAGFP--------IASPDDLEAVK 141 (632)
T ss_pred CcccccccCCCCCceEEEECCCCccccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCc--------CCCccHHHHHH
Confidence 467777777788899999999999999986 67999999999999999 89999999865 35788999999
Q ss_pred HHHHhCCC--------CceeeeecccccccccCCCcchHHHHHHHHHhcC--C--CEEEEeccCChHH------------
Q psy15244 725 ELRELIPN--------IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAG--I--DIFRVFDPLNSVP------------ 780 (1427)
Q Consensus 725 ~lr~~~p~--------~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~G--i--d~~rif~~~nd~~------------ 780 (1427)
.+.+.+++ ..+..|.|+ ..+.+++|.+++ . .++++|.+.|++|
T Consensus 142 ~i~~~~~~~v~~~~~v~~i~a~~ra-------------~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~ 208 (632)
T PLN02321 142 TIAKEVGNEVDEDGYVPVICGLSRC-------------NKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEV 208 (632)
T ss_pred HHHHhcccCCCccccceeeeeehhc-------------cHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHH
Confidence 99877654 334555554 244578888874 3 3799999999886
Q ss_pred --HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHH
Q psy15244 781 --NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSF 858 (1427)
Q Consensus 781 --~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~l 858 (1427)
.+..+++++++.|. . .+.| ++||+++.+++|++++++.+.++||++|+||||+|+++|.+++++|+.|
T Consensus 209 l~~~~~~V~~Ak~~G~---~---~v~f----s~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l 278 (632)
T PLN02321 209 VEIARDMVKYARSLGC---E---DVEF----SPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADI 278 (632)
T ss_pred HHHHHHHHHHHHHcCC---c---eEEE----ecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHH
Confidence 35677888888887 2 2233 4889999999999999999999999999999999999999999999999
Q ss_pred HHHcC---CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------CCCCCCCChhh
Q psy15244 859 REKYP---NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------TDKRCGIDLHD 929 (1427)
Q Consensus 859 r~~~p---~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~g~~tgidl~~ 929 (1427)
++++| +++|++|||||+|||+||+++|++|||++||+|++|||||+||++||+|+++|+. .|+++++|+++
T Consensus 279 ~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~ 358 (632)
T PLN02321 279 KANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDEQLGGLYTGINPVH 358 (632)
T ss_pred HHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhccCccccCcccccCHHH
Confidence 99987 4679999999999999999999999999999999999999999999999999985 36889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCc----CcccEEEecCCCccHHHHHH
Q psy15244 930 VCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKA----ASSEAYLYEIPGGQYTNLKF 1005 (1427)
Q Consensus 930 L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g----~~~~v~~~~~pGg~~snl~~ 1005 (1427)
|.++++++++.+|+++++|||+||.|+|+|++|+|++++.|++..|+||+ |+..| .++++++++++|.. ++..
T Consensus 359 L~~~s~~V~~~~g~~v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~-Pe~VG~~r~~~~~i~lgk~SGr~--~v~~ 435 (632)
T PLN02321 359 ITPTSKMVSEYTGMQVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIIS-PEDIGLFRGNDAGIVLGKLSGRH--ALKS 435 (632)
T ss_pred HHHHHHHHHHHhCcCCCCCcccccccceehhcCccHHHHccCcccccccC-HHHhCCcccccceecccccccHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999 66666 34589999999984 8999
Q ss_pred HHHHCCC--CHHHHHHHHHHHHHH
Q psy15244 1006 RTMSFGL--DFEDVKRAYRTANFL 1027 (1427)
Q Consensus 1006 ql~~~gl--~~~ev~~~~~~v~~~ 1027 (1427)
.|+++|+ ..+++.+.+.+++++
T Consensus 436 ~L~~lG~~l~~~~~~~~~~~vk~l 459 (632)
T PLN02321 436 RLKELGYELDDDELDDVFKRFKAV 459 (632)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHH
Confidence 9999999 666777777777764
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=496.76 Aligned_cols=269 Identities=48% Similarity=0.803 Sum_probs=258.5
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+||+++++|++++|++|++.|++ +|+++||+|+|++|+++++|++++||++++.+++.+|++++++|+|
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~--~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r 78 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDE--AGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLR 78 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHH--cCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcc
Confidence 68999999999998899999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
+.|.+||.+||+|+++.+++.+.++|++++|||+++|+++++..+++++|+.|+ .+.++++++ +.++++++
T Consensus 79 ~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~---~v~~~i~~~------~~~~~~~~ 149 (275)
T cd07937 79 GQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK---HVEGAICYT------GSPVHTLE 149 (275)
T ss_pred cccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC---eEEEEEEec------CCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999 888888876 22589999
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
++.++++++.++|+++|+|+||+|.++|.+++++|+.+|+++| ++|++|+|||+|||+||+++|+++||++||+|++||
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl 228 (275)
T cd07937 150 YYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL 228 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 9999999999999999999999999999999999999999995 999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHh
Q psy15244 901 SGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVR 941 (1427)
Q Consensus 901 G~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~ 941 (1427)
|||+||++||+++++|+..|+++++|+++|.+++++++++.
T Consensus 229 G~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 229 SGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred cCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888777653
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=523.56 Aligned_cols=343 Identities=15% Similarity=0.110 Sum_probs=299.8
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCcee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQ 736 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~q 736 (1427)
+|.|+|||||||+|++. ..|++++|++||+.|++ +||+.||+|.++. ++..++.++.+++.. .+..++
T Consensus 1 ~V~I~DtTLRDG~Q~~g-~~~s~eeKl~Ia~~L~~--~GVd~IE~G~p~~--------s~~d~~~v~~i~~~~~~~~~i~ 69 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREG-VSFSLEDKIRIAERLDD--LGIHYIEGGWPGA--------NPKDVQFFWQLKEMNFKNAKIV 69 (526)
T ss_pred CeEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------ChHHHHHHHHHHHhCCCCcEEE
Confidence 47999999999999985 88999999999999999 8999999975543 566677888887654 468899
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEE
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
+|+|.... +. ..+ .+..++.+.++|.+++++|.+.|++| .+..+++++++.|. .++.
T Consensus 70 ~~~r~~r~-~~--~~~--~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~---~V~~- 140 (526)
T TIGR00977 70 AFCSTRRP-HK--KVE--EDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGD---EVIY- 140 (526)
T ss_pred EEeeecCC-CC--CCc--hHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEEE-
Confidence 99886411 00 012 24568999999999999999999875 34667889999998 6542
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~ 882 (1427)
...||. |+++++++|+.++++.+.++|+++|+||||+|.++|.+++++|+.+++++|..+|++|||||+|||+||+
T Consensus 141 --~~e~f~--D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANs 216 (526)
T TIGR00977 141 --DAEHFF--DGYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANS 216 (526)
T ss_pred --Eeeeee--ecccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHH
Confidence 222332 4558999999999999999999999999999999999999999999999976679999999999999999
Q ss_pred HHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCC--CCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhh
Q psy15244 883 LACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKR--CGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLH 959 (1427)
Q Consensus 883 laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~--tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~ 959 (1427)
++|++|||++||+|++|||||+||++||+++++|.. .|++ |++|+++|.++++++++.+|+++++|+|+||.|+|+|
T Consensus 217 laAv~AGA~~Vd~TinGiGERaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h 296 (526)
T TIGR00977 217 LLAVEAGATMVQGTINGYGERCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAH 296 (526)
T ss_pred HHHHHhCCCEEEEecccccCccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeee
Confidence 999999999999999999999999999999999985 5776 7999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC---CH-HHHHHHHHHHHHH
Q psy15244 960 DVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL---DF-EDVKRAYRTANFL 1027 (1427)
Q Consensus 960 ~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl---~~-~ev~~~~~~v~~~ 1027 (1427)
++|+|++++.|++..|+||+ |+..|..++++++++||.. +++.+|+++|+ +. +++.+.+.+++++
T Consensus 297 ~sGiH~dgi~k~~~~Ye~~~-Pe~vG~~~~i~lg~~SG~~--~v~~~l~~~g~~l~~~~~~~~~~~~~vk~~ 365 (526)
T TIGR00977 297 KGGVHVSAVQRNPFTYEHIA-PELVGNERRIVVSELAGLS--NVLSKAKEFGIEIDRQSPACRTILAKIKEL 365 (526)
T ss_pred eccccHHHHhCCccccccCC-HHHcCCccEEEEecccCHH--HHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999 7788888999999999974 99999999999 22 5788888888874
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=498.04 Aligned_cols=337 Identities=18% Similarity=0.251 Sum_probs=290.6
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|.|+|||||||+|++. ..|++++|++||..|++ +|++.||++.++. ++...+..+.+....+. -.+
T Consensus 1 ~~v~i~DtTLRDG~Q~~g-~~~s~e~Ki~Ia~~Ld~--lGv~~IE~g~p~~--------s~~~~~~~~~i~~~~~~-~~~ 68 (409)
T COG0119 1 KKVIIFDTTLRDGEQAPG-VSFSVEEKIRIAKALDD--LGVDYIEAGFPVA--------SPGDFEFVRAIAEKAGL-FIC 68 (409)
T ss_pred CCcEEEeCCCCcCCcCCC-CcCCHHHHHHHHHHHHH--cCCCEEEEeCCcC--------ChhhHHHHHHHHHhcCc-ccc
Confidence 468999999999999985 88999999999999999 8999999987754 33334445555542221 112
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEE
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
.+.++ ...+ ++..++.+.++|++.+++|.+.|+++ .+..+++++++.|. .+..
T Consensus 69 ~~~~~--------~~~~-~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~---~~~~- 135 (409)
T COG0119 69 ALIAA--------LARA-IKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGL---EVRF- 135 (409)
T ss_pred hhhhh--------hHHh-HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEEE-
Confidence 22222 1222 45569999999999999999999875 45677888888887 4443
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An 881 (1427)
+.++.++.+++|++++++.+.++||++|+|+||+|.++|..++++|+.|++.+| +++|++|||||+|||+||
T Consensus 136 -------~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvAN 208 (409)
T COG0119 136 -------SAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVAN 208 (409)
T ss_pred -------EeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHH
Confidence 145666999999999999999999999999999999999999999999999997 599999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC---CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhh
Q psy15244 882 TLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT---DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDL 958 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~---g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~ 958 (1427)
+++|++|||++||+|++|+|||+||+++|+++++|... ++++++|+++|.++|+++++.+|+++|+|+|+||.|+|+
T Consensus 209 slaAv~aGa~~v~~TvnGiGERaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFa 288 (409)
T COG0119 209 SLAAVEAGADQVEGTVNGIGERAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFA 288 (409)
T ss_pred HHHHHHcCCcEEEEecccceeccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHH
Confidence 99999999999999999999999999999999766543 679999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHc
Q psy15244 959 HDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLL 1028 (1427)
Q Consensus 959 ~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~l 1028 (1427)
|++|+|+++++|++.+|+|++ |+..|..++++++ +++|+. .+...|+++|+ ..+++.+.+.+++++-
T Consensus 289 h~sGIH~dgvlkn~~tYE~i~-Pe~VG~~r~~vi~~~~sg~~--~~~~~l~~~g~~~~~~~~~~~~~~vk~l~ 358 (409)
T COG0119 289 HESGIHQDGVLKNPETYEPID-PEDVGRRRRIVIGGKHSGRK--AVKAKLEELGIELDEEELDKLFSRVKELA 358 (409)
T ss_pred hhcchhHHHHhhCHhhcCCCC-HHHcCCeeeeEeeccccchH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8888888888888 777764 77789999999 7888899999998864
|
|
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=506.20 Aligned_cols=348 Identities=15% Similarity=0.137 Sum_probs=293.7
Q ss_pred cccccccc--CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHH
Q psy15244 648 EFVNSVRK--LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAE 725 (1427)
Q Consensus 648 ~~~~~~~~--~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~ 725 (1427)
.-.+|.++ .++..|+|||||||+|++. ..|++++|++||+.|++ +||+.||+|.|+. ++..++.++.
T Consensus 18 ~~~~~~~~~~~~~~~i~dttLRDGeQ~~g-v~~s~~~Ki~ia~~L~~--~GV~~IE~GfP~~--------s~~e~e~v~~ 86 (552)
T PRK03739 18 PDRTWPSKTITKAPIWCSVDLRDGNQALI-EPMSPERKLRMFDLLVK--IGFKEIEVGFPSA--------SQTDFDFVRE 86 (552)
T ss_pred CCCCCCCcccCCCCeEeeCCCCCcCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEECCCc--------ChHHHHHHHH
Confidence 33456655 4788999999999999985 78999999999999999 8999999987664 5566777888
Q ss_pred HHHhC---CCCceeeeecccccccccCCCcchHHHHHHHHHhc--CC--CEEEEeccCChHH--------------HHHH
Q psy15244 726 LRELI---PNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQA--GI--DIFRVFDPLNSVP--------------NLVK 784 (1427)
Q Consensus 726 lr~~~---p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gi--d~~rif~~~nd~~--------------~~~~ 784 (1427)
+.+.. ++..++.|.|. ++.++++|.++ |+ +++++|.+.|++| .+..
T Consensus 87 i~~~~~~~~~~~i~~l~r~-------------~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~ 153 (552)
T PRK03739 87 LIEEGLIPDDVTIQVLTQA-------------REHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVD 153 (552)
T ss_pred HHHhcCCCCCCEEEEEecc-------------chhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHH
Confidence 86552 46778888886 34568888776 44 4799999999875 3466
Q ss_pred HHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH---CCCC---EEEEccccCcCCHHHHHHHHHHH
Q psy15244 785 GMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE---SGAQ---VLCLKDMAGLLKPTAAKLLIGSF 858 (1427)
Q Consensus 785 ~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~---~Gad---~i~i~Dt~G~l~P~~~~~lv~~l 858 (1427)
+++++++.|.........+.| +.+|++|.+++|++++++.+.+ +|++ +|+|+||+|.++|.+++++|+.+
T Consensus 154 ~v~~a~~~~~~~~~~~~~v~f----~~EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l 229 (552)
T PRK03739 154 GARLVKELAAKYPETEWRFEY----SPESFTGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWM 229 (552)
T ss_pred HHHHHHHhcccccCceeEEEE----ecccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHH
Confidence 777888877400001122333 4789999999999999999886 4655 59999999999999999999999
Q ss_pred HHHcC---CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHH
Q psy15244 859 REKYP---NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSS 935 (1427)
Q Consensus 859 r~~~p---~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~ 935 (1427)
++.+| +++|++|||||+|||+||+++|++|||++||+|++|+|||+||++||+|+++|+.+|+++++|+++|.++++
T Consensus 230 ~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG~GERaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~ 309 (552)
T PRK03739 230 CRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGERTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRR 309 (552)
T ss_pred HHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCcCcccccChhHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 99987 799999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhh-----------hcCCCCCCCCCcCccc--EEEecCCCccHHH
Q psy15244 936 YWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRE-----------LYAPFECTDLKAASSE--AYLYEIPGGQYTN 1002 (1427)
Q Consensus 936 ~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~-----------~Y~~f~~~~~~g~~~~--v~~~~~pGg~~sn 1002 (1427)
++++++|+++|+||||||.|+|+|++|+|++++.|++. .|+||+ |+..|..++ ++++++||.. +
T Consensus 310 ~v~~~~~~~i~~~~PivG~~aF~hesGiH~dgilk~~~~~~~~~~~~~~~Ye~~~-Pe~vG~~~~~~i~lgk~SG~~--~ 386 (552)
T PRK03739 310 TVEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFAAQKADAIVWEVPYLPID-PADVGRSYEAVIRVNSQSGKG--G 386 (552)
T ss_pred HHHHHhCCCCCCCCCccchhhhhhccchhHHHHhcCchhcccccccccccccccC-HHHhCCcceeEEEecccccHH--H
Confidence 99999999999999999999999999999999999987 899999 788888776 5789999985 8
Q ss_pred HHHHHH-HCCC--CHHHHHHHHHHHHH
Q psy15244 1003 LKFRTM-SFGL--DFEDVKRAYRTANF 1026 (1427)
Q Consensus 1003 l~~ql~-~~gl--~~~ev~~~~~~v~~ 1026 (1427)
++..|+ ++|+ ..+++.+.+.++++
T Consensus 387 i~~~l~~~lG~~l~~~~~~~~~~~vk~ 413 (552)
T PRK03739 387 VAYLLEQDYGLDLPRRLQIEFSRVVQA 413 (552)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999997 6999 43444444444443
|
|
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=500.60 Aligned_cols=346 Identities=12% Similarity=0.092 Sum_probs=289.8
Q ss_pred ccccc--CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHH
Q psy15244 651 NSVRK--LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRE 728 (1427)
Q Consensus 651 ~~~~~--~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~ 728 (1427)
.|..+ .+.+.|+|||||||+|++. ..|++++|++||+.|++ +||+.||+|.++. ++...+.++.+.+
T Consensus 17 ~w~~~~~~~~~~~~DtTLRDG~Q~~g-~~~s~e~Ki~ia~~L~~--~Gvd~IE~Gfp~~--------s~~D~e~v~~i~~ 85 (564)
T TIGR00970 17 TWPDRVITRAPRWLSTDLRDGNQALP-DPMSPARKRRYFDLLVR--IGFKEIEVGFPSA--------SQTDFDFVREIIE 85 (564)
T ss_pred CCCccccCcCCeEecCCCCccccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHH
Confidence 45543 4778999999999999985 78999999999999999 8999999986653 3455666777765
Q ss_pred h--C-CCCceeeeecccccccccCCCcchHHHHHHHHHhc--CC--CEEEEeccCChHH--------------HHHHHHH
Q psy15244 729 L--I-PNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQA--GI--DIFRVFDPLNSVP--------------NLVKGMD 787 (1427)
Q Consensus 729 ~--~-p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gi--d~~rif~~~nd~~--------------~~~~~i~ 787 (1427)
. . +++.++.|.|.. +.+++++.++ |+ +++++|.+.|+++ .+..+++
T Consensus 86 ~~l~~~~~~i~al~~~~-------------~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~ 152 (564)
T TIGR00970 86 QGAIPDDVTIQVLTQSR-------------EELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTK 152 (564)
T ss_pred hcCCCCCcEEEEEcCCc-------------hhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5 2 357788887752 3446777766 44 4899999999875 3456677
Q ss_pred HHHHhcCCCcEEEEEEE--eeccCCCCCCCCCCHHHHHHHHHHHHHCCC------CEEEEccccCcCCHHHHHHHHHHHH
Q psy15244 788 AVQQVTGGSTIVEATIC--YAGDLTNPNKKKYSLNYYEDLAKQLVESGA------QVLCLKDMAGLLKPTAAKLLIGSFR 859 (1427)
Q Consensus 788 ~a~~~G~~~~~v~~~i~--~t~d~~~p~~~~~~~~~~~~~a~~l~~~Ga------d~i~i~Dt~G~l~P~~~~~lv~~lr 859 (1427)
++++.|. ....++. +.--|+.+|.+|.+++|++++++.+.++|+ ++|+|+||+|.++|.+++++|+.|+
T Consensus 153 ~ak~~~~---~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~ 229 (564)
T TIGR00970 153 LVRKCTK---QAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFS 229 (564)
T ss_pred HHHHhcc---cccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHH
Confidence 7888776 3222110 011134788999999999999999999987 4999999999999999999999999
Q ss_pred HHcC---CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q psy15244 860 EKYP---NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSY 936 (1427)
Q Consensus 860 ~~~p---~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~ 936 (1427)
+.+| +++|++|||||+|||+||+++|++|||++||+|++|+|+|+||++||+|+++|+.+|+++++|++.|.+++++
T Consensus 230 ~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~GERaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~ 309 (564)
T TIGR00970 230 TNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNGERTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRT 309 (564)
T ss_pred HhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCCccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 9886 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhh---------------hcCCCCCCCCCcCccc--EEEecCCCcc
Q psy15244 937 WRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRE---------------LYAPFECTDLKAASSE--AYLYEIPGGQ 999 (1427)
Q Consensus 937 v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~---------------~Y~~f~~~~~~g~~~~--v~~~~~pGg~ 999 (1427)
+++++|+++++|+|+||.|+|+|++|+|++++.|++. .|+||+ |+..|..++ ++++++||..
T Consensus 310 v~~~~~~~i~~~~PivG~~aF~h~SGiH~dai~K~~~~~~~~~~~~~~~~~~~Ye~~~-Pe~vG~~~~~~i~lg~~SGk~ 388 (564)
T TIGR00970 310 VEYCNKIPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDAAAADMLWQVPYLPLD-PRDVGRTYEAVIRVNSQSGKG 388 (564)
T ss_pred HHHHhCCCCCCCCCchhhhHhhhccchhHHHHhcCchhhcccccccccccccccccCC-HHHhCCccccEEEccccccHH
Confidence 9999999999999999999999999999999999976 999999 777777766 8899999985
Q ss_pred HHHHHHHHH-HCCC--CHHHHHHHHHHHHH
Q psy15244 1000 YTNLKFRTM-SFGL--DFEDVKRAYRTANF 1026 (1427)
Q Consensus 1000 ~snl~~ql~-~~gl--~~~ev~~~~~~v~~ 1026 (1427)
++...|+ ++|+ ..+++.+.+.++++
T Consensus 389 --~i~~~l~~~~G~~l~~~~~~~~~~~vk~ 416 (564)
T TIGR00970 389 --GVAYIMKTDHGLDLPRRLQIEFSSVVQD 416 (564)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8999996 7999 33444444444443
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=433.53 Aligned_cols=264 Identities=18% Similarity=0.202 Sum_probs=239.2
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhh-hccccChHHHHHHHHHhCCCCce
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL-KFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~-rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
++|.|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|. |.... .-...++|+.++.+++ ++++.+
T Consensus 3 ~~v~I~D~TlRDG~Q~~-~~~~s~e~k~~ia~~L~~--~Gv~~IEvgs---f~~p~~~p~~~d~~e~~~~l~~-~~~~~~ 75 (287)
T PRK05692 3 KRVKIVEVGPRDGLQNE-KRFIPTADKIALIDRLSA--AGLSYIEVAS---FVSPKWVPQMADAAEVMAGIQR-RPGVTY 75 (287)
T ss_pred CceEEEECCCCccccCc-CCCcCHHHHHHHHHHHHH--cCCCEEEeCC---CcCcccccccccHHHHHHhhhc-cCCCeE
Confidence 57999999999999998 599999999999999999 8999999982 22221 1112367999999976 678888
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~ 801 (1427)
++|++ | ...+++|.++|++.+++|.++|+. ++++.+++++++.|. .+.+
T Consensus 76 ~~l~~------------~--~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~---~v~~ 138 (287)
T PRK05692 76 AALTP------------N--LKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGV---RVRG 138 (287)
T ss_pred EEEec------------C--HHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---EEEE
Confidence 87753 2 234899999999999999999965 357789999999999 9999
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
+|||+ |++|+.+++++++++++++++.++|+|+|+||||+|+++|.+++++|+.+|+++|+++|++|+|||+|||+||
T Consensus 139 ~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN 216 (287)
T PRK05692 139 YVSCV--LGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALAN 216 (287)
T ss_pred EEEEE--ecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHH
Confidence 99999 7899999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q psy15244 882 TLACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~ 946 (1427)
+++|+++||++||+|++|||| ++||+++|+++++|+.+|+++++|+++|.++++++++.+|+++|
T Consensus 217 ~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 217 IYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred HHHHHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999 89999999999999999999999999999999999999999876
|
|
| >PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=424.37 Aligned_cols=193 Identities=35% Similarity=0.558 Sum_probs=161.9
Q ss_pred EEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccc
Q psy15244 990 AYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIF 1067 (1427)
Q Consensus 990 v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~ 1067 (1427)
||.|||||||+|||++||+++|+ +|++|+++|++||++||||||||||||||||||+|||++++..+ ...+|
T Consensus 1 V~~hqiPGG~~sNl~~Q~~~~g~~dr~~ev~~e~~~v~~~lG~~~~VTPsSqiVg~qA~~nV~~~~~g~------r~~~~ 74 (196)
T PF02436_consen 1 VYRHQIPGGMYSNLRQQLKELGLGDRFPEVLKEYPRVRKDLGYPPKVTPSSQIVGDQAVFNVLNGLLGE------RYKDF 74 (196)
T ss_dssp HHHH---HHHHHHHHHHHHCTTTTTCHHHHHHHHHHHHHHTTS--SSTTHHHHHHHHHHHHHHTT-HHT------TTSS-
T ss_pred CceecCCchhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHhhhcCc------cccch
Confidence 46899999999999999999999 99999999999999999999999999999999999999965222 33589
Q ss_pred cHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCC
Q psy15244 1068 PKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPV 1147 (1427)
Q Consensus 1068 ~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~ 1147 (1427)
|+||++|++|+||+||+|||++++++||+++++|++||++. ++|.||+++ ++ ++.+++|
T Consensus 75 p~~v~~~~~G~~G~pp~~~~~~l~~~vl~~~~~i~~RP~~~-----------l~p~d~~~~-----r~---~l~~~~g-- 133 (196)
T PF02436_consen 75 PDSVVDYLLGKYGKPPGGFPEELRKKVLKGEEPITGRPGDL-----------LPPADLDKL-----RK---ELEEKAG-- 133 (196)
T ss_dssp BHHHHHHHTTTT---TTSS-HHHHHHHHTTS---SSSGGGC-----------S----HHHH-----HH---HHHHHCT--
T ss_pred hHHHHHHhCcccCCCCCCCCHHHHHHHhcCCCCCCCCcccc-----------CChhhHHHH-----HH---HHHHHcC--
Confidence 99999999999999999999999999999999999999999 999999988 88 8888888
Q ss_pred CCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeC
Q psy15244 1148 DKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKT 1227 (1427)
Q Consensus 1148 ~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~ 1227 (1427)
++.++|| +|||+|||+++.+|+++|++||+++.|||+.|++|+++|++++|++++
T Consensus 134 ------------------~~~~ded-------vlsyal~P~v~~~f~~~~~~~g~~~~l~t~~~~~g~~~~ee~~v~l~~ 188 (196)
T PF02436_consen 134 ------------------REPTDED-------VLSYALFPKVAEDFLKFRAKYGDVSVLPTPVFFYGLKPGEEISVELEP 188 (196)
T ss_dssp ------------------STSCHHH-------HHHHHHCHHHHHHHHHHHHHHS-GGCS-HHHHHHHH-TTEEEEEESCT
T ss_pred ------------------CCCCHHH-------HHHHhcCchhHHHHHHHHHhcCCCCcCCchhhhcCCCCCeEEEEEECC
Confidence 4579999 999999999999999999999999999999999999999999999999
Q ss_pred CcEEEee
Q psy15244 1228 GDTAYVT 1234 (1427)
Q Consensus 1228 Gk~~~i~ 1234 (1427)
||++.|+
T Consensus 189 Gktl~vk 195 (196)
T PF02436_consen 189 GKTLIVK 195 (196)
T ss_dssp TEEEEEE
T ss_pred CcEEEEe
Confidence 9999997
|
4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B .... |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=426.10 Aligned_cols=255 Identities=20% Similarity=0.270 Sum_probs=233.8
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEecc-----CCCchhhhhhccccChHHHHHHHHHhCCCC
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMW-----GGAVSHTCLKFLKECPWERLAELRELIPNI 733 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~-----ggatfd~~~rfl~e~p~erl~~lr~~~p~~ 733 (1427)
|+|+|||||||+|+. +++|++++|+++++.|++ +|++.||+| ++++|+ ++|..++||++++.+++.++++
T Consensus 1 i~i~D~TlRDG~Q~~-~~~~~~~~k~~i~~~L~~--~Gv~~iEvg~~~~~~~~~~~--~~~~~~~~~e~i~~~~~~~~~~ 75 (263)
T cd07943 1 VYIHDVTLRDGMHAV-RHQFTLEQVRAIARALDA--AGVPLIEVGHGDGLGGSSLN--YGFAAHTDEEYLEAAAEALKQA 75 (263)
T ss_pred CEEEeCCCCcCcccC-CeecCHHHHHHHHHHHHH--cCCCEEEeecCCCCCCcccc--cCCCCCChHHHHHHHHHhccCC
Confidence 579999999999985 699999999999999999 899999999 455664 5678899999999999999999
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN 813 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~ 813 (1427)
++++|++- ++. + .++++++.++|+|.+||+++.|+.++++.+++.+++.|+ .+.++++.+
T Consensus 76 ~~~~~~~~----~~~----~--~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~---~v~~~~~~~------- 135 (263)
T cd07943 76 KLGVLLLP----GIG----T--VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGM---DVVGFLMMS------- 135 (263)
T ss_pred EEEEEecC----Ccc----C--HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCC---eEEEEEEec-------
Confidence 99998741 111 1 356999999999999999999999999999999999999 888877644
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 814 KKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 814 ~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
++++++++.++++++.++|+|+|+|+||+|.++|.+++++++.+|+++|.++|++|+|||+|||+||+++|+++||++|
T Consensus 136 -~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 136 -HMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred -cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 3799999999999999999999999999999999999999999999996569999999999999999999999999999
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~ 939 (1427)
|+|++|||+|+||++||+++++|+..|+++++|+++|.++++++.+
T Consensus 215 d~s~~GlG~~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 215 DGSLAGLGAGAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred EeecccccCCcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998765
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >KOG2367|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=421.49 Aligned_cols=342 Identities=17% Similarity=0.197 Sum_probs=295.3
Q ss_pred ccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHh
Q psy15244 650 VNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELREL 729 (1427)
Q Consensus 650 ~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~ 729 (1427)
++.+...+.++++|||||||+||+.+ .|++++|++||++|+. .|+++||++.+.. +|..++..+.+.+.
T Consensus 49 ~~~l~~~n~vr~~dttLRdGeQs~ga-~~~~~qK~eiar~L~~--~gvd~IEv~fP~a--------Se~~~~~~~~i~k~ 117 (560)
T KOG2367|consen 49 PNDLSDVNYVRVLDTTLRDGEQSPGA-FLTTEQKLEIARQLAK--LGVDIIEVGFPVA--------SEQDFEDCKTIAKT 117 (560)
T ss_pred CccccCcCcceeecccccccccCCCC-cCCcHHHHHHHHHHHh--cCcCEEEecCccc--------CcchHHHHHHHHHh
Confidence 55566778899999999999999975 5999999999999999 7999999997754 77888888888886
Q ss_pred CCCCc-eeeeecccccccccCCCcchHHHHHHHHHhcCCCE----EEEeccCChHH--------------HHHHHHHHHH
Q psy15244 730 IPNIP-FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDI----FRVFDPLNSVP--------------NLVKGMDAVQ 790 (1427)
Q Consensus 730 ~p~~~-~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~----~rif~~~nd~~--------------~~~~~i~~a~ 790 (1427)
.|..+ ++.|.|+. ..+++++.+++.+. +++|.+.|+++ ...++++.|+
T Consensus 118 ~g~~~~I~~l~rc~-------------~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvk 184 (560)
T KOG2367|consen 118 LGYVPVICTLIRCH-------------MDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVK 184 (560)
T ss_pred CCCCceEEEeeccc-------------hHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 66544 89999874 34577777777665 99999999985 2234556777
Q ss_pred HhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC---CceE
Q psy15244 791 QVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP---NILI 867 (1427)
Q Consensus 791 ~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p---~ipi 867 (1427)
.+|+ -.+. |++++.++.+.+|+++++++..++|+.++.|+||+|+.+|.+.++||..++.+.| ++-|
T Consensus 185 slg~------~~ie----FSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~I 254 (560)
T KOG2367|consen 185 SLGK------WDIE----FSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCI 254 (560)
T ss_pred hccc------ceEE----ECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEE
Confidence 7775 1122 4588999999999999999999999999999999999999999999999999887 5679
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCC---CCCCCChhhHHHHHHHHHHHhCCC
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTD---KRCGIDLHDVCDYSSYWRKVRELY 944 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g---~~tgidl~~L~~l~~~v~~~~g~~ 944 (1427)
..|||||+|+|+||+..++.|||+.|++|++|+|||+||++|++|+++|.-.| +...+++.+|.++.+++++..+++
T Consensus 255 s~HcHND~G~a~Ant~~g~~AGA~~VE~~i~GiGERtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~ 334 (560)
T KOG2367|consen 255 STHCHNDLGCATANTELGLLAGARQVEVTINGIGERTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGIN 334 (560)
T ss_pred EEeecCCccHHHHHHHHHhhcCcceEEEEeeccccccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999888 778899999999999999999999
Q ss_pred CCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCc-ccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHH
Q psy15244 945 APAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAAS-SEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAY 1021 (1427)
Q Consensus 945 ~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~-~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~ 1021 (1427)
+|+++||+|.++|+|++|+|+|++.|.|..|+|.+|.+++... .-+..++.+|.. .++..++++|| ..+...+..
T Consensus 335 v~p~~pi~G~~~Fth~SGiHqdaIlk~r~tYeiLdPeDiG~~~~a~i~~n~lSG~~--avk~rl~~Lgl~L~d~~~~e~~ 412 (560)
T KOG2367|consen 335 VPPHKPIVGANAFTHESGIHQDAILKNRSTYEILDPEDIGMEREAGIVLNKLSGRH--AVKDRLKQLGLDLPDEQQKEFF 412 (560)
T ss_pred CCCCCccccceeEeecccccHHHHhcCCCCcccCChHHcCcceeeeEEeccccchh--HHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999955554322 456788999986 78889999999 555555555
Q ss_pred HHHHHH
Q psy15244 1022 RTANFL 1027 (1427)
Q Consensus 1022 ~~v~~~ 1027 (1427)
.+++++
T Consensus 413 s~~k~l 418 (560)
T KOG2367|consen 413 SRIKKL 418 (560)
T ss_pred HHHHHH
Confidence 555543
|
|
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=417.62 Aligned_cols=268 Identities=13% Similarity=0.148 Sum_probs=233.7
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC---CC
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP---NI 733 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p---~~ 733 (1427)
+.-.|+|||||||+|++. ..|+.++|++||+.|++ +||+.||+|.++. +++.++.++.|.+... ++
T Consensus 31 ~~p~~~DTTLRDGeQ~pG-v~fs~eeKl~IA~~L~~--lGVd~IEvG~Pa~--------s~~e~e~ir~I~~~~~~~~~~ 99 (333)
T PRK14847 31 AAPIWMSTDLRDGNQALI-EPMDGARKLRLFEQLVA--VGLKEIEVAFPSA--------SQTDFDFVRKLIDERRIPDDV 99 (333)
T ss_pred CCCceecCCCCccCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEeeCCCC--------CHHHHHHHHHHHHhCCCCCCc
Confidence 344699999999999996 78999999999999999 7999999998875 6677888888887753 68
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhc----CCCEEEEeccCChHH--------------HHHHHHHHHHHhcCC
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQA----GIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGG 795 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~----Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~ 795 (1427)
.++.|+|+. .++|+++.++ +.++++||.+.|+++ .+.+++++|++.|.
T Consensus 100 ~i~~~~r~~-------------~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~- 165 (333)
T PRK14847 100 TIEALTQSR-------------PDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALAD- 165 (333)
T ss_pred EEEEEecCc-------------HHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc-
Confidence 899999974 3345555555 456799999999875 45678888888854
Q ss_pred CcEEE---EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC-C-----CCEEEEccccCcCCHHHHHHHHHHHHHHcC---
Q psy15244 796 STIVE---ATICYAGDLTNPNKKKYSLNYYEDLAKQLVES-G-----AQVLCLKDMAGLLKPTAAKLLIGSFREKYP--- 863 (1427)
Q Consensus 796 ~~~v~---~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~-G-----ad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p--- 863 (1427)
... ..+.| +.+|++|++++|+.++++.+.+. | +++|+|+||+|.++|..++++|+.|+++++
T Consensus 166 --~~~g~~~~V~~----~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~ 239 (333)
T PRK14847 166 --ANPGTQWIYEY----SPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRD 239 (333)
T ss_pred --ccCCCceEEEE----eeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 111 12333 37899999999999999987655 5 778999999999999999999999999875
Q ss_pred CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCC
Q psy15244 864 NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVREL 943 (1427)
Q Consensus 864 ~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~ 943 (1427)
+++|++|+|||+|||+||+++|++|||++||+|++|+|+|+||++||+|+++|+..|+++++|++.|.++++++++.+|+
T Consensus 240 ~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~GERaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~ 319 (333)
T PRK14847 240 CIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQL 319 (333)
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcCCccccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc
Q psy15244 944 YAPAHNLLWRCG 955 (1427)
Q Consensus 944 ~~~~~kpivG~~ 955 (1427)
++|+|||++|-+
T Consensus 320 ~v~~~kPivg~~ 331 (333)
T PRK14847 320 PIDVFHPYAWLD 331 (333)
T ss_pred CCCCCCCeecCC
Confidence 999999999964
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=422.43 Aligned_cols=258 Identities=19% Similarity=0.254 Sum_probs=236.7
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccC-----CCchhhhhhccccChHHHHHHHHHhCC
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWG-----GAVSHTCLKFLKECPWERLAELRELIP 731 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~g-----gatfd~~~rfl~e~p~erl~~lr~~~p 731 (1427)
++|+|+|||||||+|+. +++|+++++++|++.|++ +|++.||+|. |++|+ +.|...++||.++.+++.++
T Consensus 2 ~~i~I~D~TLRDG~q~~-~~~f~~~~~~~i~~~L~~--aGv~~IEvg~~~g~g~~s~~--~g~~~~~~~e~i~~~~~~~~ 76 (337)
T PRK08195 2 KKIYISDVTLRDGMHAV-RHQYTLEQVRAIARALDA--AGVPVIEVTHGDGLGGSSFN--YGFGAHTDEEYIEAAAEVVK 76 (337)
T ss_pred CceEEEECCCCCcCcCC-CCccCHHHHHHHHHHHHH--cCCCEEEeecCCCCCCcccc--CCCCCCCHHHHHHHHHHhCC
Confidence 57999999999999986 699999999999999999 8999999984 44554 45777889999999999999
Q ss_pred CCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 732 NIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 732 ~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
++++++|++- |+. + .++++.|.++|+|.|||+.++++.+++.+.++.+|+.|+ .+.+.++++.
T Consensus 77 ~~~~~~ll~p----g~~----~--~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~---~v~~~l~~a~---- 139 (337)
T PRK08195 77 QAKIAALLLP----GIG----T--VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGM---DTVGFLMMSH---- 139 (337)
T ss_pred CCEEEEEecc----Ccc----c--HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCC---eEEEEEEecc----
Confidence 9999988752 111 2 245999999999999999999999999999999999999 8888888762
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHc-CCceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
++++++++++++.+.++|+++|+|+||+|.++|.+++++|+++++++ |+++|++|+|||+|||+||+++|+++||
T Consensus 140 ----~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa 215 (337)
T PRK08195 140 ----MAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGA 215 (337)
T ss_pred ----CCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKV 940 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~ 940 (1427)
++||+|++|||+++||++||+++++|+.+|+++++|+++|.++++++..-
T Consensus 216 ~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p 265 (337)
T PRK08195 216 TRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRP 265 (337)
T ss_pred CEEEecChhhcccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987654
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=417.15 Aligned_cols=268 Identities=17% Similarity=0.145 Sum_probs=235.0
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
.++|.|+|||||||.|++. ..|++++|++|++.|++ +|++.||++.++... .+..+. +..|.++.+++ .++..+
T Consensus 44 ~~~V~I~DtTlRDG~Q~~g-~~~s~e~Ki~ia~~L~~--~GV~~IEvGs~vspk-~vPqma-d~~ev~~~i~~-~~~~~~ 117 (347)
T PLN02746 44 PKFVKIVEVGPRDGLQNEK-NIVPTSVKVELIQRLVS--SGLPVVEATSFVSPK-WVPQLA-DAKDVMAAVRN-LEGARF 117 (347)
T ss_pred CCceEEEECCCCccCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEECCCcCcc-cccccc-cHHHHHHHHHh-ccCCce
Confidence 4679999999999999985 78999999999999999 899999998654211 122222 33455666654 344444
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~ 801 (1427)
..|++ | .+.+++|.++|++.+++|.+.|+.+ .+.++++++++.|+ .+.+
T Consensus 118 ~~l~~------------n--~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl---~v~~ 180 (347)
T PLN02746 118 PVLTP------------N--LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSI---PVRG 180 (347)
T ss_pred eEEcC------------C--HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEEE
Confidence 44331 3 3459999999999999999999875 34578999999999 9999
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
+++++ |++|+.++.++++++++++++.++|+|+|+||||+|+++|.+++++|+++++++|..+|++|+|||+|||+||
T Consensus 181 ~is~~--fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN 258 (347)
T PLN02746 181 YVSCV--VGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALAN 258 (347)
T ss_pred EEEee--ecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHH
Confidence 99998 7899999999999999999999999999999999999999999999999999997789999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCC
Q psy15244 882 TLACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAH 948 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~ 948 (1427)
+++|+++||++||+|++|||| ++||+++|+++++|+.+|+++++|+++|.++++++++.+|++++..
T Consensus 259 ~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~ 331 (347)
T PLN02746 259 ILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSK 331 (347)
T ss_pred HHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999 8999999999999999999999999999999999999999998863
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=418.98 Aligned_cols=257 Identities=16% Similarity=0.220 Sum_probs=234.9
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEecc-----CCCchhhhhhccccChHHHHHHHHHhCC
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMW-----GGAVSHTCLKFLKECPWERLAELRELIP 731 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~-----ggatfd~~~rfl~e~p~erl~~lr~~~p 731 (1427)
++|+|+|||||||+|+. +++|+++++++|++.|++ +|++.||+| ||++|+. .|...++|+.++.+++.++
T Consensus 1 ~~i~i~D~TLRDG~q~~-~~~f~~~~~~~ia~~Ld~--aGV~~IEvg~g~gl~g~s~~~--G~~~~~~~e~i~~~~~~~~ 75 (333)
T TIGR03217 1 KKLYITDVTLRDGMHAI-RHQFTIEQVRAIAAALDE--AGVDAIEVTHGDGLGGSSFNY--GFSAHTDLEYIEAAADVVK 75 (333)
T ss_pred CCcEEEECCCCCCCcCC-CCcCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCCccccC--CCCCCChHHHHHHHHHhCC
Confidence 46899999999999986 699999999999999999 899999998 4556653 4677889999999999999
Q ss_pred CCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 732 NIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 732 ~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
+++++++++.. . -+ .++++.|.++|+|.|||+.++++.++.++.++.+|+.|+ .+.+.++++
T Consensus 76 ~~~~~~ll~pg----~----~~--~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~---~v~~~l~~s----- 137 (333)
T TIGR03217 76 RAKVAVLLLPG----I----GT--VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGM---DTVGFLMMS----- 137 (333)
T ss_pred CCEEEEEeccC----c----cC--HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCC---eEEEEEEcc-----
Confidence 99999887531 1 11 346999999999999999999999999999999999999 888888776
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
.++++++++++++.+.++|+++|+|+||+|.++|.+++++|+++|++++ +++|++|+|||+|||+||+++|+++||
T Consensus 138 ---~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa 214 (333)
T TIGR03217 138 ---HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGA 214 (333)
T ss_pred ---cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCC
Confidence 2799999999999999999999999999999999999999999999984 699999999999999999999999999
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~ 939 (1427)
++||+|++|||+++||++||.++++|+.+|+++++|+.+|.++++.+-.
T Consensus 215 ~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~ 263 (333)
T TIGR03217 215 TRIDASLRGLGAGAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVR 263 (333)
T ss_pred CEEEeecccccccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986654
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=464.15 Aligned_cols=429 Identities=22% Similarity=0.357 Sum_probs=352.0
Q ss_pred CCCCEEEEEcCCHHH-----------HHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEVA-----------IRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGeia-----------~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
..+|||||+|.|.+. ..++++|+++|+++++++++++..+.+..+||+.|..+ .+.+.|.
T Consensus 4 ~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p---------~~~~~v~ 74 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEP---------LTPEAVE 74 (1050)
T ss_pred CCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECC---------CCHHHHH
Confidence 458999999999864 35999999999999999999998888889999999865 4578999
Q ss_pred HHHHhcCCCEEEeCCCc-----ccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH
Q psy15244 124 CIAKNNNVDAIHPGYGF-----LSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD 198 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gf-----lsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e 198 (1427)
++++++++|+|+|++|+ +++....+..+++.|++++|+++++++.+.||..+|++|+++|+|+|++. .+.+.+
T Consensus 75 ~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~ 152 (1050)
T TIGR01369 75 KIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESE--IAHSVE 152 (1050)
T ss_pred HHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCee--ecCCHH
Confidence 99999999999999875 22223446689999999999999999999999999999999999999987 789999
Q ss_pred HHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEE
Q psy15244 199 KVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVV 278 (1427)
Q Consensus 199 ea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv 278 (1427)
++.++++++|||+||||+.|+||+|+++|++.+||.+++..+...+ ..++++||+||+|.+|+++++++|.+|+++
T Consensus 153 e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~ 228 (1050)
T TIGR01369 153 EALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCI 228 (1050)
T ss_pred HHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEE
Confidence 9999999999999999999999999999999999999987765432 236899999999779999999999999988
Q ss_pred Eeeeecccccc------ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCC
Q psy15244 279 HLYERDCSMQR------RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQV 351 (1427)
Q Consensus 279 ~l~erd~s~qr------~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~g 351 (1427)
.+ |+.++ +.+..+..+|++.++++.++++.+.|.+++++|||.|.+++||++++ +|++|+||||||+++
T Consensus 229 ~~----~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~ 304 (1050)
T TIGR01369 229 TV----CNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSR 304 (1050)
T ss_pred EE----eeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCc
Confidence 76 44443 34566778898779999999999999999999999999999999997 478999999999999
Q ss_pred chhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceee--eeCCCCCcccccC
Q psy15244 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV--FTDPASIGIRVDS 429 (1427)
Q Consensus 352 e~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~--~~~p~~~gvr~d~ 429 (1427)
++.+++.+||+||.+.++++++|++|..+ +.++. | +++ ..|.|..+.+.. .++|-....+.+
T Consensus 305 s~~l~s~atG~pl~~~~~~~alG~~l~~~---~n~i~--g---------~~~-~~~~p~~~~~~~k~p~~~~~~~~~~~- 368 (1050)
T TIGR01369 305 SSALASKATGYPIAKVAAKLAVGYGLDEL---KNPVT--G---------TTP-ASFEPSLDYVVVKIPRWDFDKFAGVD- 368 (1050)
T ss_pred chhhhhHHhCCCHHHHHHHHHcCCCchhh---cCCCc--C---------cCc-cccCcCCCeEEEEEEeCCCCCCCccc-
Confidence 98899999999999999999999998753 22121 1 333 357788887543 344432222222
Q ss_pred CCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccc------cCHHHHHhhcCCcc----------ccc
Q psy15244 430 SCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT------TNLPFLLNVFDDKK----------FLS 493 (1427)
Q Consensus 430 ~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~------tni~~l~~~l~~~~----------f~~ 493 (1427)
..+...+. ++|+|+++|+|+++|++|+.|+|.. ...|.. .+-+-|...|.||. |+.
T Consensus 369 ------~~~~~~~k-~~G~v~~~g~~~~ea~~ka~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~ 440 (1050)
T TIGR01369 369 ------RKLGTQMK-SVGEVMAIGRTFEEALQKALRSLEI-GATGFDLPDREVEPDEDLWRALKKPTDRRIFAIAEALRR 440 (1050)
T ss_pred ------CCcCcccc-eeeEEEEECCCHHHHHHHHHHHhcc-CCCCCCccccCCCCHHHHHHhcCCCCCchHHHHHHHHHc
Confidence 12222223 3999999999999999999999965 445542 12355778888885 888
Q ss_pred CCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 494 GEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 494 g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
|++ +++..+|++++++++++.++|++...++.-
T Consensus 441 g~~-----~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~ 473 (1050)
T TIGR01369 441 GVS-----VDEIHELTKIDRWFLHKIKNIVDLEEELEE 473 (1050)
T ss_pred CCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 844 566688999999999999999987777643
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=406.07 Aligned_cols=264 Identities=17% Similarity=0.245 Sum_probs=225.6
Q ss_pred eecCcccCCCCCCCcccCHHHHHHHHHHH-HhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 662 TDTTFRDAHQSLLATRVRTYDLKKVSPFV-ANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 662 ~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l-~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
+|||||||.|++. ..|++++|++|++.| ++ +|++.||++.++. ++..++.++.+.+..... +. +.
T Consensus 1 ~D~TlRDG~Q~~~-~~~s~e~K~~i~~~L~~~--~Gv~~IEvg~~~~--------s~~e~~av~~~~~~~~~~--~~-~~ 66 (280)
T cd07945 1 MDTTLRDGEQTSG-VSFSPSEKLNIAKILLQE--LKVDRIEVASARV--------SEGEFEAVQKIIDWAAEE--GL-LD 66 (280)
T ss_pred CCCCCCCcCcCCC-CccCHHHHHHHHHHHHHH--hCCCEEEecCCCC--------CHHHHHHHHHHHHHhhhh--cc-cc
Confidence 5999999999985 789999999999997 77 7999999997543 444456666665532110 00 00
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
+....+ ..+|. ..+++|.++|++.++++.+.|+.+ .+..+++++++.|. .+.+++.
T Consensus 67 ~~~~~a---~~~~~--~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~---~v~~~~~-- 136 (280)
T cd07945 67 RIEVLG---FVDGD--KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGI---EVNIYLE-- 136 (280)
T ss_pred CcEEEE---ecCcH--HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCC---EEEEEEE--
Confidence 111111 22442 359999999999999999999875 34567889999998 7776654
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
||++|+ +.+++|+.++++++.++|+++|+||||+|+++|.+++++++.+++++|+++|++|+|||+|||+||+++|+
T Consensus 137 -d~~~~~--r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~ 213 (280)
T cd07945 137 -DWSNGM--RDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAV 213 (280)
T ss_pred -eCCCCC--cCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 467887 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccc
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLEN-TDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpiv 952 (1427)
++||++||+|++|||+|+||++||+++++|+. +|+++++|+++|.++++++++.+|+++++|||||
T Consensus 214 ~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 214 KAGIKGLHTTVNGLGERAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred HhCCCEEEEecccccccccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 99999999999999999999999999999964 6999999999999999999999999999999986
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=409.17 Aligned_cols=243 Identities=21% Similarity=0.286 Sum_probs=222.6
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+|+.. .+|++++|++|++.|++ +|++.||+|+++ .++++|++++.+++.+|++.+++|+|
T Consensus 1 i~D~TlRDG~Q~~~-~~~~~~~k~~i~~~L~~--~Gv~~iEvg~~~--------~~~~~~~~~~~l~~~~~~~~~~~l~r 69 (268)
T cd07940 1 IFDTTLRDGEQTPG-VSLTPEEKLEIARQLDE--LGVDVIEAGFPA--------ASPGDFEAVKRIAREVLNAEICGLAR 69 (268)
T ss_pred CCCCCCCccccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCC--------CCHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 68999999999985 79999999999999999 899999998654 36789999999999999999999998
Q ss_pred ccccccccCCCcchHHHHHHHHHhcC----CCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEE
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAG----IDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~G----id~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
+. ..++++|.++| +++|++|+++|+.+ ++..+++.+++.|. .+.
T Consensus 70 ~~-------------~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~---~v~-- 131 (268)
T cd07940 70 AV-------------KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGL---DVE-- 131 (268)
T ss_pred CC-------------HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---eEE--
Confidence 73 34588999999 99999999999774 44577888888888 443
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC--ceEEEeecCCcchHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN--ILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~--ipi~~H~Hnd~GlA~A 880 (1427)
|+ +|+.++++++|+.++++++.++|+++|+||||+|.++|.+++++++.+|+++|+ ++|++|+|||+|||+|
T Consensus 132 --~~----~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~A 205 (268)
T cd07940 132 --FS----AEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVA 205 (268)
T ss_pred --Ee----eecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHH
Confidence 33 677889999999999999999999999999999999999999999999999976 9999999999999999
Q ss_pred HHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCC----CCCCCChhhHHHHHHHHH
Q psy15244 881 TTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTD----KRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g----~~tgidl~~L~~l~~~v~ 938 (1427)
|+++|+++||++||+|++|||+++||++||+++.+|+.++ +++++|+++|.+++++++
T Consensus 206 n~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~ 267 (268)
T cd07940 206 NSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVS 267 (268)
T ss_pred HHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999886 999999999999999976
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=460.37 Aligned_cols=364 Identities=19% Similarity=0.274 Sum_probs=300.9
Q ss_pred CCCCEEEEEcCCHHHHH-----------HHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEVAIR-----------VARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~r-----------iiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
..++||||+|.|++.+. ++++|+++|+++++++++++..+.+..+||+.|+++ ++++.|+
T Consensus 572 ~~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~p---------l~~e~vl 642 (1102)
T PLN02735 572 TNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEP---------LTVEDVL 642 (1102)
T ss_pred CCCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEe---------CCHHHHH
Confidence 45789999999985443 899999999999999999999999999999999974 7799999
Q ss_pred HHHHhcCCCEEEeCCCc-------------ccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCc
Q psy15244 124 CIAKNNNVDAIHPGYGF-------------LSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGT 190 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gf-------------lsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~ 190 (1427)
++|+++++|+|+|++|. ++|+..|++ +...|+.++||++++++.+.||..+|++++++|||+|++.
T Consensus 643 ~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~ 721 (1102)
T PLN02735 643 NVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGG 721 (1102)
T ss_pred HHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCee
Confidence 99999999999999983 333333444 4456899999999999999999999999999999999986
Q ss_pred cccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEE
Q psy15244 191 TEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQIL 270 (1427)
Q Consensus 191 ~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl 270 (1427)
.+.+.+++.++++++|||+||||++|+||+||++|++.+||..+++.+.+. +++++++||+||++++|++|+++
T Consensus 722 --~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl 795 (1102)
T PLN02735 722 --IARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDAL 795 (1102)
T ss_pred --EeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEE
Confidence 688999999999999999999999999999999999999999999887654 44678999999998999999999
Q ss_pred ecccccEEEee--eeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCC
Q psy15244 271 GDKYGDVVHLY--ERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348 (1427)
Q Consensus 271 ~Dg~G~vv~l~--erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpR 348 (1427)
+|++|+++... +..-....+........|++.++++.+++|.+.+.+++++|||.|++++||+++++|++||||||||
T Consensus 796 ~D~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR 875 (1102)
T PLN02735 796 ADSEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPR 875 (1102)
T ss_pred ECCCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCC
Confidence 99888877532 2111111122233445688789999999999999999999999999999999988889999999999
Q ss_pred CCCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCC-CCCceeeeeCC-CCCccc
Q psy15244 349 LQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQP-STGRLDVFTDP-ASIGIR 426 (1427)
Q Consensus 349 l~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P-~~G~i~~~~~p-~~~gvr 426 (1427)
+++++|+++.+||+|++++++++++|++|.++++.++... ...+++++++ |.+.|.+ +++....+++. .+.|++
T Consensus 876 ~s~t~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~~~-~~~~vk~~vf---~~~~~~~~d~~lg~emkStGe~~g~~ 951 (1102)
T PLN02735 876 ASRTVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEVIP-AHVSVKEAVL---PFDKFQGCDVLLGPEMRSTGEVMGID 951 (1102)
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHcCCChhhcCCCccccc-CeEEEEeccC---ChhhCCCCCCCcceEEEeCCceeeec
Confidence 9999999999999999999999999999988877765443 5558999985 5556655 44444445544 455665
Q ss_pred ccCCCcCCCcee
Q psy15244 427 VDSSCPYPGLQI 438 (1427)
Q Consensus 427 ~d~~~~~~G~~I 438 (1427)
.+...++.+..+
T Consensus 952 ~~~~~a~~ka~~ 963 (1102)
T PLN02735 952 YEFSKAFAKAQI 963 (1102)
T ss_pred CCHHHHHHHHHh
Confidence 554333333333
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=455.12 Aligned_cols=437 Identities=21% Similarity=0.300 Sum_probs=347.1
Q ss_pred CCCCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCH
Q psy15244 51 PPPPKTMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNI 119 (1427)
Q Consensus 51 ~~~~~~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi 119 (1427)
.|....++||||+|+|++ +..++++|+++|+++++++++++..+....+||+.|..+ .+.
T Consensus 17 ~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p---------~~~ 87 (1102)
T PLN02735 17 AGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAP---------MTP 87 (1102)
T ss_pred CCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCC---------CCH
Confidence 344456899999999997 446999999999999999999987667778899988754 457
Q ss_pred HHHHHHHHhcCCCEEEeCCCc-ccccH--HH--HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccC
Q psy15244 120 PEIICIAKNNNVDAIHPGYGF-LSERE--DF--AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPV 194 (1427)
Q Consensus 120 ~~Ii~ia~~~~vDaI~pg~gf-lsE~~--~~--a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v 194 (1427)
+.+.++++++++|+|+|++|. ..++. .+ ...|+..|++++|+++++++.+.||..+|++|+++|||+|++. .+
T Consensus 88 e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v 165 (1102)
T PLN02735 88 ELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSG--IA 165 (1102)
T ss_pred HHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCee--Ee
Confidence 789999999999999998753 22322 12 2467889999999999999999999999999999999999986 68
Q ss_pred CCHHHHHHHHHhcC-CcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecc
Q psy15244 195 TDVDKVKEFCDEVE-FPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK 273 (1427)
Q Consensus 195 ~s~eea~~~a~~iG-yPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg 273 (1427)
.+.+++.++++++| ||+||||+.|+||+|+.+|++.+||.++++.+... ..+++++|||||.|.+|+++++++|.
T Consensus 166 ~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~ 241 (1102)
T PLN02735 166 TTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAA----SITSQVLVEKSLLGWKEYELEVMRDL 241 (1102)
T ss_pred CCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEecCCCeEEEEEEEEcC
Confidence 89999999999998 99999999999999999999999999999876532 23678999999996699999999998
Q ss_pred cccEEEeeeecc--ccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcC-CCcEEEEeeCCCC
Q psy15244 274 YGDVVHLYERDC--SMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDK-DDNFYFIEVNPRL 349 (1427)
Q Consensus 274 ~G~vv~l~erd~--s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~-dG~~yfIEINpRl 349 (1427)
.|+++.+..... ...-+....+..+|++.++++.+++|.++|.+++++||++ |.+++||++++ +|++||||||||+
T Consensus 242 ~g~~i~v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~ 321 (1102)
T PLN02735 242 ADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRV 321 (1102)
T ss_pred CCCEEEEeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCC
Confidence 788765521110 0111235567778998899999999999999999999995 99999999995 7899999999999
Q ss_pred CCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccC
Q psy15244 350 QVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDS 429 (1427)
Q Consensus 350 ~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~ 429 (1427)
++++.+++.+||+|+++.++++|+|.+|+++ +.++... .+ ..|.|..+.+... .| |+..
T Consensus 322 s~ss~l~s~atG~~~a~~~~klalG~~l~~~---~~~~~~~-----------~~-a~~ep~~d~~~~k-~p-----~~~f 380 (1102)
T PLN02735 322 SRSSALASKATGFPIAKMAAKLSVGYTLDQI---PNDITLK-----------TP-ASFEPSIDYVVTK-IP-----RFAF 380 (1102)
T ss_pred CCcchhhhhhhCCCHHHHHHHHHCCCChhhh---ccccccc-----------cc-hheeecCCcEEEE-cc-----cCCc
Confidence 9999999999999999999999999999765 2222211 11 3577776654432 22 1111
Q ss_pred CC-cCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccc--------cCHHHHHhhcCCcc----------
Q psy15244 430 SC-PYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT--------TNLPFLLNVFDDKK---------- 490 (1427)
Q Consensus 430 ~~-~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~--------tni~~l~~~l~~~~---------- 490 (1427)
.. ......+.+...| .|.|++.|+|++||+.|+.|.|. +...|+. .+.+-|...|.||.
T Consensus 381 ~~f~~~~~~l~~~mks-~ge~m~~gr~~~ea~~ka~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a 458 (1102)
T PLN02735 381 EKFPGSQPILTTQMKS-VGEAMALGRTFQESFQKALRSLE-TGFSGWGCAKVKELDWDWEQLKYKLRVPNPDRIHAIYAA 458 (1102)
T ss_pred ccccCCCcccceeeee-cceEEEecCCHHHHHHHHHHHhc-CCCCCCCccccccccCCHHHHHHhcCCCCCchHHHHHHH
Confidence 10 0122334444455 89999999999999999999994 4555652 12235777788885
Q ss_pred cccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhh
Q psy15244 491 FLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETL 530 (1427)
Q Consensus 491 f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 530 (1427)
|+.|++ +++..+|++++++++++.++|++....+.
T Consensus 459 ~~~g~~-----~~~~~~~t~id~~f~~~~~~~~~~~~~~~ 493 (1102)
T PLN02735 459 MKKGMT-----VDEIHELTFIDPWFLTQLKELVDVEQFLK 493 (1102)
T ss_pred HHcCCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 888844 66668899999999999999988776664
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=401.83 Aligned_cols=243 Identities=20% Similarity=0.263 Sum_probs=223.5
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|.++ +++++|+.++.+++..+++.+.+|.|
T Consensus 1 i~D~TlRDG~Q~~-~~~~~~~~k~~i~~~L~~--~Gv~~iE~g~p~--------~~~~~~e~~~~l~~~~~~~~~~~~~r 69 (259)
T cd07939 1 INDTTLRDGEQAP-GVAFSREEKLAIARALDE--AGVDEIEVGIPA--------MGEEEREAIRAIVALGLPARLIVWCR 69 (259)
T ss_pred CCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEecCC--------CCHHHHHHHHHHHhcCCCCEEEEecc
Confidence 6899999999998 489999999999999999 899999998654 36788999999999889999999887
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
+. .+.++.|.++|++.++++.+.|+.+ ++..+++++++.|+ .+..
T Consensus 70 ~~-------------~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~---~v~~----- 128 (259)
T cd07939 70 AV-------------KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL---FVSV----- 128 (259)
T ss_pred CC-------------HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEE-----
Confidence 52 3458899999999999999999874 56788999999998 5542
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
+.++.++++++|+.++++++.++|+++|+||||+|.++|.+++++|+.+++.+| ++|++|+|||+|||+||+++|+
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi 204 (259)
T cd07939 129 ---GAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAV 204 (259)
T ss_pred ---eeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHH
Confidence 256778999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~ 939 (1427)
++||++||+|++|||+++||++||+++++|+.+ |+++++|+++|.++++++++
T Consensus 205 ~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 205 RAGATHVSVTVNGLGERAGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred HhCCCEEEEecccccccccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999997 99999999999999999876
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=401.90 Aligned_cols=253 Identities=17% Similarity=0.147 Sum_probs=227.8
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCC----chhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA----VSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~gga----tfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
|+|||||||+|.+ +++|+.++|++|++.|++ +|++.||+|.++ .+..+.+|+.+++|+++....+ +++++.
T Consensus 1 i~D~TLRDG~q~~-~~~f~~~~~~~ia~~L~~--~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 75 (266)
T cd07944 1 ILDCTLRDGGYVN-NWDFGDEFVKAIYRALAA--AGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIA 75 (266)
T ss_pred CccCCcccCcccc-CccCCHHHHHHHHHHHHH--CCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEE
Confidence 6899999999977 599999999999999999 899999998543 3556778888888877765543 689999
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
+++|..+ ...++++.+.++|++.+||+++.++++++..+++++|+.|+ .+.+.++++ ++
T Consensus 76 ~~~~~~~----------~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~---~v~~~~~~a--------~~ 134 (266)
T cd07944 76 VMVDYGN----------DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGY---EVFFNLMAI--------SG 134 (266)
T ss_pred EEECCCC----------CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCC---eEEEEEEee--------cC
Confidence 9998753 23457999999999999999999999999999999999999 888877776 26
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++++++.++++++.++|+++|+|+||+|.++|++++++++++|++++ ++||++|+|||+|||+||+++|+++||++||+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~ 214 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDA 214 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999985 39999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHH-HHHHHH
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYS-SYWRKV 940 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~-~~v~~~ 940 (1427)
|++|||+++||++||+++++|+.+ +++++|+++|.+++ +++...
T Consensus 215 s~~G~G~~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~ 259 (266)
T cd07944 215 TVYGMGRGAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPL 259 (266)
T ss_pred ecccCCCCcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 78999999998888 566554
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=400.34 Aligned_cols=253 Identities=21% Similarity=0.276 Sum_probs=217.9
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||.|++. ..|++++|++|++.|++ +|++.||+|.+..... +....+. -+.++.+.. .+++.+..|.
T Consensus 1 i~D~TlRDG~Q~~~-~~~s~e~K~~i~~~L~~--~Gv~~IEvGs~~~~~~-~p~~~d~-~~~~~~l~~-~~~~~~~~~~- 73 (274)
T cd07938 1 IVEVGPRDGLQNEK-TFIPTEDKIELIDALSA--AGLRRIEVTSFVSPKW-VPQMADA-EEVLAGLPR-RPGVRYSALV- 73 (274)
T ss_pred CeeCCCCCCCcCCC-CCcCHHHHHHHHHHHHH--cCCCEEEeCCCCCccc-ccccCCH-HHHHhhccc-CCCCEEEEEC-
Confidence 68999999999986 78999999999999999 8999999985432221 0111111 122333322 2345555553
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
.| .+.+++|.++|++.|++|.++|+. +.+..+++++++.|+ .++++++|+
T Consensus 74 -----------~~--~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~---~v~~~i~~~ 137 (274)
T cd07938 74 -----------PN--LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL---RVRGYVSTA 137 (274)
T ss_pred -----------CC--HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEEeE
Confidence 12 345999999999999999999986 345677899999999 999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
|++|+.++++++|++++++++.++|+|+|+|+||+|+++|.+++++|+.+++++|+++|++|+|||+|||+||+++|+
T Consensus 138 --f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~ 215 (274)
T cd07938 138 --FGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAAL 215 (274)
T ss_pred --ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEeccccCC------CCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q psy15244 887 KAGADIVDVAADSMS------GICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 887 ~AGad~VD~av~GmG------~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~ 938 (1427)
++||++||+|++||| ||+||+++|+++++|+.+|+++++|+++|.+++++++
T Consensus 216 ~aGa~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~ 273 (274)
T cd07938 216 EAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGIDLDKLLAAARWIS 273 (274)
T ss_pred HhCCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999 5899999999999999999999999999999999875
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=388.50 Aligned_cols=250 Identities=31% Similarity=0.433 Sum_probs=231.7
Q ss_pred eecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc
Q psy15244 662 TDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG 741 (1427)
Q Consensus 662 ~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg 741 (1427)
+|||||||+|+++ ..|++++++++++.|++ +|++.||+|+|+.++.. .+.+++|+.++.+++..+++++++|+|.
T Consensus 1 ~D~tlRDG~q~~~-~~~s~e~~~~i~~~L~~--~GV~~IEvg~~~~~~~~--p~~~~~~~~i~~l~~~~~~~~~~~l~~~ 75 (265)
T cd03174 1 TDTTLRDGLQSEG-ATFSTEDKLEIAEALDE--AGVDSIEVGSGASPKAV--PQMEDDWEVLRAIRKLVPNVKLQALVRN 75 (265)
T ss_pred CCCCCCCcccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEeccCcCcccc--ccCCCHHHHHHHHHhccCCcEEEEEccC
Confidence 5999999999997 66899999999999999 79999999999987665 6789999999999999999999999875
Q ss_pred cccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy15244 742 NSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGMDAVQQVTGGSTIVEATICYAG 807 (1427)
Q Consensus 742 ~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~ 807 (1427)
. .++++++.++|++.++++++.| .++.+..+++.+++.|+ .+...++.+.
T Consensus 76 ~-------------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~---~v~~~~~~~~ 139 (265)
T cd03174 76 R-------------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL---EVEGSLEDAF 139 (265)
T ss_pred c-------------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEEeec
Confidence 2 5579999999999999999999 57788899999999999 8887776552
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHH
Q psy15244 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVK 887 (1427)
Q Consensus 808 d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~ 887 (1427)
.+ .++++++.++++.+.++|++.|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|++
T Consensus 140 ---~~---~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~ 213 (265)
T cd03174 140 ---GC---KTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALE 213 (265)
T ss_pred ---CC---CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHH
Confidence 11 399999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred hcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q psy15244 888 AGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 888 AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~ 938 (1427)
+||++||+|++|||+|+||++||+++.+|+..++++++|++.|.+++++++
T Consensus 214 aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 264 (265)
T cd03174 214 AGADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRYVE 264 (265)
T ss_pred cCCCEEEeccccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998875
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=376.31 Aligned_cols=208 Identities=50% Similarity=0.848 Sum_probs=189.2
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
||..++++++++|||+||+....+.+.+++.++++++|||+||||+.|+||+||++|++.++|.++++.+.+++..+||+
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999998655699999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~V 330 (1427)
+++++|+||++.+|++||+++|++|+++++++|+|+.|+|+|++++++|++.|+++.+++|++.+.++++++||.|++|+
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCc
Q psy15244 331 EFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLT 378 (1427)
Q Consensus 331 Eflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~ 378 (1427)
||++++ +|++||||||||+|++|+++|++||+||+++|+++++|++|+
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 999997 899999999999999999999999999999999999999986
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=380.84 Aligned_cols=244 Identities=15% Similarity=0.132 Sum_probs=216.3
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMI 738 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml 738 (1427)
.+|+|||||||+|++. ..|++++|++|++.|++ +|++.||+|+|+. .+..++..+.+++......+.++
T Consensus 1 ~~I~D~TLRDG~Q~~~-~~~s~~~k~~i~~~L~~--~Gv~~IEvG~P~~--------~~~~~~~~~~l~~~~~~~~v~~~ 69 (262)
T cd07948 1 FKIIDSTLREGEQFAN-AFFDTEDKIEIAKALDA--FGVDYIELTSPAA--------SPQSRADCEAIAKLGLKAKILTH 69 (262)
T ss_pred CEEEECCCCCcCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEECCCC--------CHHHHHHHHHHHhCCCCCcEEEE
Confidence 3699999999999985 89999999999999999 8999999998754 56778888888776666667777
Q ss_pred ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEE
Q psy15244 739 LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATIC 804 (1427)
Q Consensus 739 ~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~ 804 (1427)
+|+. .+.+++|.++|++.+++|.++|+.+ .+.++++++++.|+ .+.+++.
T Consensus 70 ~r~~-------------~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~---~v~~~~e 133 (262)
T cd07948 70 IRCH-------------MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGI---EVRFSSE 133 (262)
T ss_pred ecCC-------------HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEE
Confidence 7642 3459999999999999999999753 45667788889998 6665543
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 805 YAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 805 ~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
++++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+|+.+| ++|++|+|||+|||+||+++
T Consensus 134 --------da~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~ 204 (262)
T cd07948 134 --------DSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYA 204 (262)
T ss_pred --------eeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHH
Confidence 445788999999999999999999999999999999999999999999994 99999999999999999999
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC---CCCCCCChhhHHHHHHHHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT---DKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~---g~~tgidl~~L~~l~~~v~ 938 (1427)
|+++||++||+|++|||+|+||+++|+++.+|+.+ +..+++|++.|++++++++
T Consensus 205 a~~aG~~~vd~s~~GlGeraGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~ 261 (262)
T cd07948 205 ALEAGATHIDTTVLGIGERNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVA 261 (262)
T ss_pred HHHhCCCEEEEeccccccccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999865 5668999999999999986
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=381.04 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=217.0
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCceeeee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQMIL 739 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~qml~ 739 (1427)
|+|||||||+|++ +++|++++|++|++.|++ +||+.||+|.++. ++...+.++.+++.. +++.+.++.
T Consensus 1 i~D~TLRDG~Q~~-~~~~s~e~k~~i~~~L~~--~Gv~~IE~G~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (273)
T cd07941 1 IYDTTLRDGTQGE-GISFSVEDKLRIARKLDE--LGVDYIEGGWPGS--------NPKDTEFFARAKKLKLKHAKLAAFG 69 (273)
T ss_pred CCcCCCCCcCCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEecCCcC--------CHHHHHHHHHHHHcCCCCcEEEEEe
Confidence 6899999999998 589999999999999999 8999999976543 333344455565554 589999999
Q ss_pred cccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEEEEe
Q psy15244 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEATICY 805 (1427)
Q Consensus 740 Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~i~~ 805 (1427)
|+.. .++. ++|. ..++.++++|++.++++.+.|+.+ ++..+++++++.|+ .+.++.+
T Consensus 70 ~~~~-~~i~--~~~~--~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~---~v~~~~~- 140 (273)
T cd07941 70 STRR-AGVK--AEED--PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGR---EVIFDAE- 140 (273)
T ss_pred cccc-cCCC--ccch--HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC---eEEEeEE-
Confidence 8742 3332 3332 448999999999999999998753 56788999999999 6665422
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 806 AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 806 t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
+| .+.++++++|++++++++.++|+++|+|+||+|.++|.+++++++.+|+++|+++|++|+|||+|||+||+++|
T Consensus 141 --~~--~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA 216 (273)
T cd07941 141 --HF--FDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAA 216 (273)
T ss_pred --ec--cccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHH
Confidence 22 23458999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHH-hCCCC--CCCChhhHHHHHHHHHH
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLE-NTDKR--CGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~-~~g~~--tgidl~~L~~l~~~v~~ 939 (1427)
+++||++||+|++|||+|+||+++|+++++|+ ..|++ +++|++.|+++++++++
T Consensus 217 ~~aGa~~id~s~~GlGeraGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 217 VEAGATQVQGTINGYGERCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred HHcCCCEEEEeccccccccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998 44665 48999999999999863
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=428.89 Aligned_cols=436 Identities=22% Similarity=0.364 Sum_probs=341.5
Q ss_pred CCCCCCCEEEEEcCCHHHH-----------HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 52 PPPKTMEKILIANRSEVAI-----------RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGeia~-----------riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
|....++||||+|+|++.+ .++++++++|+++++++++++....+..++|+.|..+ .+.+
T Consensus 2 ~~~~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p---------~~~e 72 (1066)
T PRK05294 2 PKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP---------ITPE 72 (1066)
T ss_pred CCCCCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECC---------CCHH
Confidence 3345689999999999754 6999999999999999998887777788999998865 4578
Q ss_pred HHHHHHHhcCCCEEEeCCCccc-ccH--HHH--HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC
Q psy15244 121 EIICIAKNNNVDAIHPGYGFLS-ERE--DFA--KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT 195 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gfls-E~~--~~a--~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~ 195 (1427)
.|.++++++++|+|+|+.|... .+. .+. ..+++.|++++||++++++.+.||..+|++|+++|+|+|++. .+.
T Consensus 73 ~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~ 150 (1066)
T PRK05294 73 FVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSG--IAH 150 (1066)
T ss_pred HHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCee--eeC
Confidence 9999999999999999876422 111 222 357889999999999999999999999999999999999987 789
Q ss_pred CHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 196 DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 196 s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
+.+++.++++++|||+||||+.|.||+|+++|++.+||.++++++... ...++++||+||++.+|+++.++.|++|
T Consensus 151 s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~----s~~~~vlvEe~I~G~~Eisv~v~rd~~g 226 (1066)
T PRK05294 151 SMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDL----SPVTEVLIEESLLGWKEYEYEVMRDKND 226 (1066)
T ss_pred CHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCeEEEEEcccCceEEEEEEEEcCCC
Confidence 999999999999999999999999999999999999999988765432 1246899999999779999999999999
Q ss_pred cEEEeeeecc-c-cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcC-CCcEEEEeeCCCCCC
Q psy15244 276 DVVHLYERDC-S-MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDK-DDNFYFIEVNPRLQV 351 (1427)
Q Consensus 276 ~vv~l~erd~-s-~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~-dG~~yfIEINpRl~g 351 (1427)
+++.+...+- . ..-+.......+|+..++++..+++.+.|.+++++|||. |++++||++++ +|++||+|||||+++
T Consensus 227 ~~~~~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~ 306 (1066)
T PRK05294 227 NCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSR 306 (1066)
T ss_pred CEEEEeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCc
Confidence 9887632211 0 001223446678887789999999999999999999999 99999999995 688999999999999
Q ss_pred chhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCC
Q psy15244 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSC 431 (1427)
Q Consensus 352 e~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~ 431 (1427)
+..+++.++|+|+.+..+++++|.++..+. ..+ .| ++. ..|.|....+.. ..| +..++
T Consensus 307 s~~~~s~~tG~pl~~~~~~~~lG~~l~~m~---n~~--~g---------~~~-~~~~p~~~~v~~-k~p---~~~~~--- 364 (1066)
T PRK05294 307 SSALASKATGYPIAKVAAKLAVGYTLDEIK---NDI--TG---------KTP-ASFEPSLDYVVT-KIP---RFAFE--- 364 (1066)
T ss_pred ceeeeeHhhCCCHHHHHHHHHcCCChHHhc---Ccc--cC---------CCc-ccccccCCeEEE-Ecc---CCccc---
Confidence 988888899999999999999999886432 111 01 111 124344333221 123 12222
Q ss_pred cCCCceecc--cCccceEEEEEEcCCHHHHHHHHHHHhhccEEccccc------CHHHHHhhcCCcc----------ccc
Q psy15244 432 PYPGLQISP--DYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTT------NLPFLLNVFDDKK----------FLS 493 (1427)
Q Consensus 432 ~~~G~~I~~--~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~t------ni~~l~~~l~~~~----------f~~ 493 (1427)
.+.+....+ ...+ +|+|++.|+|+++|++++.|.+. +...|... +.+-|...|.||. |+.
T Consensus 365 ~y~k~~~~~g~~mrk-~G~v~~~g~~~e~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~ 442 (1066)
T PRK05294 365 KFPGADRRLGTQMKS-VGEVMAIGRTFEESLQKALRSLE-IGVTGLDEDLFEEESLEELREELKEPTPERLFYIAEAFRR 442 (1066)
T ss_pred cccCCCCCccceecc-cceEEEEcCCHHHHHHHHHHhcC-CCCCCCCccccccCCHHHHHhhcCCCCCchHHHHHHHHHc
Confidence 222211111 1122 89999999999999999999994 45566432 3467888889985 778
Q ss_pred CCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 494 GEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 494 g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
|+. +++..+|++++.+++++.++|+++..++.-
T Consensus 443 g~~-----~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~ 475 (1066)
T PRK05294 443 GAS-----VEEIHELTKIDPWFLEQIEEIVELEEELKE 475 (1066)
T ss_pred CCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 844 566688999999999999999998888754
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=420.64 Aligned_cols=435 Identities=20% Similarity=0.324 Sum_probs=341.0
Q ss_pred CCCCCCCEEEEEcCCHHH-----------HHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 52 PPPKTMEKILIANRSEVA-----------IRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGeia-----------~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
|....++||||+|+|++. ..++++++++|++++++++++........++|..|..+ .+.+
T Consensus 2 ~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep---------~~~e 72 (1068)
T PRK12815 2 PKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEP---------LTVE 72 (1068)
T ss_pred CCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECC---------CCHH
Confidence 444568999999999874 46999999999999999999887667777889887754 4579
Q ss_pred HHHHHHHhcCCCEEEeCCCccc-ccH--HHH--HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC
Q psy15244 121 EIICIAKNNNVDAIHPGYGFLS-ERE--DFA--KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT 195 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gfls-E~~--~~a--~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~ 195 (1427)
.+.++++++++|+|+|+.|... .+. .++ ..+++.|++++||+++++..+.||..+|++|+++|+|+|++. .+.
T Consensus 73 ~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~--~v~ 150 (1068)
T PRK12815 73 FVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESE--IVT 150 (1068)
T ss_pred HHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCce--eeC
Confidence 9999999999999999876432 221 122 257888999999999999999999999999999999999987 789
Q ss_pred CHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 196 DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 196 s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
+.+++.++++++|||+||||+.|.||+|+.+|++.+||.++++.+.... ..++++||+||++.+|+++.+++|.+|
T Consensus 151 s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g 226 (1068)
T PRK12815 151 SVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNG 226 (1068)
T ss_pred CHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999987665321 235899999999779999999999989
Q ss_pred cEEEeeeecccccc---ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC-CcEEEEeeCCCCCC
Q psy15244 276 DVVHLYERDCSMQR---RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD-DNFYFIEVNPRLQV 351 (1427)
Q Consensus 276 ~vv~l~erd~s~qr---~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d-G~~yfIEINpRl~g 351 (1427)
+++.+.... .+.. +....+..+|++.++++..+++.+.+.+++++||+.|.+++||+++++ |++|++|||||+++
T Consensus 227 ~~~~~~~~e-~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~ 305 (1068)
T PRK12815 227 NCITVCNME-NIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSR 305 (1068)
T ss_pred CEEEEEece-ecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCccc
Confidence 988653211 1111 122355568887799999999999999999999999999999999975 78999999999999
Q ss_pred chhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCC
Q psy15244 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSC 431 (1427)
Q Consensus 352 e~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~ 431 (1427)
+..++..++|+++.+..+++++|.+|+++.. ++ .|.. + ..|.|....+ ....| ...++
T Consensus 306 s~~l~~~atG~pl~~~~~~~alG~~l~ei~~---~i--~g~~---------~-a~~ep~~d~~-~~k~p---~~~f~--- 363 (1068)
T PRK12815 306 SSALASKATGYPIAKIAAKLAVGYTLNELKN---PV--TGLT---------Y-ASFEPALDYV-VVKFP---RWPFD--- 363 (1068)
T ss_pred chhhhhHhhCCcHHHHHHHHHcCCChHHhcC---Cc--cCCc---------c-cccCCccceE-EEEec---cCccc---
Confidence 9999999999999999999999999876532 11 1210 1 1344554442 11223 11222
Q ss_pred cCCC--ceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccccc-------CHHHHHhhcCCcc----------cc
Q psy15244 432 PYPG--LQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTT-------NLPFLLNVFDDKK----------FL 492 (1427)
Q Consensus 432 ~~~G--~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~t-------ni~~l~~~l~~~~----------f~ 492 (1427)
.+.+ ........| .|+|++.|+|+++|++|+.+++. +...|... +-+-|.+.|.||. |+
T Consensus 364 ~y~~~~~~~g~kmks-~G~v~~ig~~~eea~~ka~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~ 441 (1068)
T PRK12815 364 KFGYADRTLGTQMKA-TGEVMAIGRNFESAFQKALRSLE-IKRNGLSLPIELSGKSDEELLQDLRHPDDRRLFALLEALR 441 (1068)
T ss_pred cccCccccccceecc-cceEEEecCCHHHHHHHHHHhhc-CCCCCCCCccccccCCHHHHHHHhccCCCChHHHHHHHHH
Confidence 2222 122221222 59999999999999999999994 45555531 3466788889985 88
Q ss_pred cCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 493 SGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 493 ~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
.|++ +++..+|++++++++++.++|++...++.-
T Consensus 442 ~g~~-----~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~ 475 (1068)
T PRK12815 442 RGIT-----YEEIHELTKIDPFFLQKFEHIVALEKKLAE 475 (1068)
T ss_pred cCCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 8844 566678999999999999999998777753
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=379.89 Aligned_cols=379 Identities=16% Similarity=0.209 Sum_probs=290.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY 138 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~ 138 (1427)
||||+|+|..++.++++|+++|+++++++.+++ ++...+||+.+.++ |.|.+.|.++|+++++|+|+|..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~--~~~~~~ad~~~~~~--------~~d~~~l~~~~~~~~id~v~~~~ 70 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSYVIN--------MLDGDALRAVIEREKPDYIVPEI 70 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--CchhhhCceEEEcC--------CCCHHHHHHHHHHhCCCEEEecc
Confidence 699999999999999999999999999988776 45667899988753 57889999999999999999988
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHH-HhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 139 GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAA-LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 139 gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a-~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
+..+. .....+++.|++ +.|++++++++.||..+|+++ +++|||+|++. .+.+.+++.++++++|||+||||+.
T Consensus 71 e~v~~--~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~VvKP~~ 145 (380)
T TIGR01142 71 EAIAT--DALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYM--FADSLDELREAVEKIGYPCVVKPVM 145 (380)
T ss_pred CccCH--HHHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECC
Confidence 76542 234567888976 568999999999999999985 89999999987 6889999999999999999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEE
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~ 297 (1427)
|+||+|+++|++.+||.++++.+...+. ..++++++|+||+++.|+++.++.+.+|++... ......+.........
T Consensus 146 g~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 222 (380)
T TIGR01142 146 SSSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFC-APIGHRQIDGDYHESW 222 (380)
T ss_pred CcCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe-cCcceEEeCCeeEEEE
Confidence 9999999999999999999987654221 124689999999977899999987766765432 1111222233333356
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCC
Q psy15244 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377 (1427)
Q Consensus 298 aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l 377 (1427)
.|+ .++++.++++.+.+.+++++||+.|++|+||+++++ ++||+|||||++++...+....|+|+++++++.++|.++
T Consensus 223 ~p~-~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~ 300 (380)
T TIGR01142 223 QPQ-EMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD-EVIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPI 300 (380)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC-cEEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCC
Confidence 777 599999999999999999999999999999999866 599999999999875444444699999999999999987
Q ss_pred ccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHH
Q psy15244 378 TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYK 457 (1427)
Q Consensus 378 ~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~ 457 (1427)
+... ..+.++...+..+... .+.-..|... . ...+++++. -+..+|.. ....+|+|++.|.|.+
T Consensus 301 ~~~~-------~~~~~~~~~i~~~~~g-~~~~~~~~~~-~--~~~~~~~~~-~~~k~~~~----~~~~~G~v~~~~~s~~ 364 (380)
T TIGR01142 301 PGIP-------QLGPAASAVIKAKVTG-YSPAFRGLEK-A--LSVPNTQVR-LFGKPEAY----VGRRLGVALATAKSVE 364 (380)
T ss_pred CCcc-------ccCCceEEEEEccccc-ccchhhHHHH-H--HcCCCCEEE-ECCCCcCC----CCCcCEEEEEecCCHH
Confidence 6321 1222333344433221 0100011111 1 112333332 11233422 2345999999999999
Q ss_pred HHHHHHHHHhhccEEc
Q psy15244 458 SSCEKMRRALEETQVS 473 (1427)
Q Consensus 458 eA~~r~~raL~e~~I~ 473 (1427)
++.+++.++++.++|+
T Consensus 365 ~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 365 AARERAEEVAHAVEVR 380 (380)
T ss_pred HHHHHHHHHHhhccCC
Confidence 9999999999988875
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=390.29 Aligned_cols=380 Identities=16% Similarity=0.192 Sum_probs=301.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.+.+||+|+|+|..+..++++|+++|+++++++.+++ ++...+||+.+.. +|.|.+.+.++|++ +|.|
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~--apa~~~AD~~~v~--------~~~D~~~l~~~a~~--~dvI 87 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED--CPASSVAARHVVG--------SFDDRAAVREFAKR--CDVL 87 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchhhhCceeeeC--------CCCCHHHHHHHHHH--CCEE
Confidence 4568999999999999999999999999999977665 6777889987653 37889999999998 7877
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
....... +....+.+++.|++ ++|+++++..++||..+|++++++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 88 t~e~e~v--~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~--~v~~~~el~~~~~~ig~P~VvK 162 (577)
T PLN02948 88 TVEIEHV--DVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFM--EIDDLESAEKAGDLFGYPLMLK 162 (577)
T ss_pred EEecCCC--CHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeE--EeCCHHHHHHHHHhcCCcEEEE
Confidence 6543322 24556888999987 57999999999999999999999999999987 6889999999999999999999
Q ss_pred ecCCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccce
Q psy15244 215 AAFGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293 (1427)
Q Consensus 215 P~~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk 293 (1427)
|+.|+ ||+|+++|++.+||.++++.+.. .+..+++|+||++.+|++|.++++.+|++..+ ...+..++++..
T Consensus 163 P~~ggs~g~Gv~~v~~~~eL~~a~~~~~~------~~~~vlvEefI~~~~EisV~v~r~~~G~i~~~-p~~E~~~~~~~~ 235 (577)
T PLN02948 163 SRRLAYDGRGNAVAKTEEDLSSAVAALGG------FERGLYAEKWAPFVKELAVMVARSRDGSTRCY-PVVETIHKDNIC 235 (577)
T ss_pred eCCCCCCCCCeEEECCHHHHHHHHHHhhC------CCCcEEEEecCCCCeEEEEEEEECCCCCEEEe-cCcccEEECCee
Confidence 99877 79999999999999999876532 14689999999977999999999888877653 334455555555
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.....|+ .++++.++++.+.|.+++++|++.|++++||+++++|++||+|||||++++..++...+++|+++.++|.++
T Consensus 236 ~~~~~Pa-~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa~l 314 (577)
T PLN02948 236 HVVEAPA-NVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVL 314 (577)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHHHc
Confidence 5667898 699999999999999999999999999999999999999999999999976446666899999999999999
Q ss_pred CCCCccccccccCcccceEEEEEEeecCCCC-CccCCCC-CceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 374 GKSLTELGLCQEKITPQGCAIQCHLRTEDPK-RNFQPST-GRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~-~~f~P~~-G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
|.|++... ....+|+...+..++.. .++.+.. +.......|+ ..+++. ..+|.. ....+|+|++
T Consensus 315 Glpl~~~~------~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~p~-~~v~~y---gk~~~r----~~rkmGhV~~ 380 (577)
T PLN02948 315 GLPLGDTS------MKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNIPG-ASVHWY---GKPEMR----KQRKMGHITV 380 (577)
T ss_pred CCCCCCcc------ccCCcEEEEEEeccccccccccchhhHHHHHhhCCC-CEEEEe---cCCCCC----CCCeeEEEEE
Confidence 99986321 22345777777766432 1232221 2111122232 234443 122322 1356999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEc
Q psy15244 452 HTATYKSSCEKMRRALEETQVS 473 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~ 473 (1427)
.|.|.+++.++++.+++.+.+.
T Consensus 381 ~g~~~~e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 381 VGPSAAEVEARLDQLLAEESAD 402 (577)
T ss_pred ecCCHHHHHHHHHHHHhhhccC
Confidence 9999999999999999876654
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=369.57 Aligned_cols=363 Identities=18% Similarity=0.278 Sum_probs=286.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
|++|+|+|+|..+..++.+++++|+++++++.+++ ++....||+.+.. +|.|.+.+.++++ .+|.|.+
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~--~pa~~~ad~~~~~--------~~~D~~~l~~~a~--~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPD--SPAAQVADEVIVA--------DYDDVAALRELAE--QCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--CchhHhCceEEec--------CCCCHHHHHHHHh--cCCEEEe
Confidence 56999999999999999999999999999977665 5667789988764 3788999999998 4888854
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
..+ .-.....+.+++.+ .++|++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||+|+||+
T Consensus 70 e~e--~i~~~~l~~l~~~~--~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~v~s~~~l~~~~~~~g~P~vlKp~ 143 (372)
T PRK06019 70 EFE--NVPAEALDALAARV--PVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFA--VVDSAEDLEAALADLGLPAVLKTR 143 (372)
T ss_pred CcC--CCCHHHHHHHhcCC--eeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCcEEEEeC
Confidence 333 22344445555553 468999999999999999999999999999987 789999999999999999999999
Q ss_pred CCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 217 FGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 217 ~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
.|| ||+|++++++.+||..+++.+ ++.++++|+||++++|+++.++.+.+|+++.+ ......++.+....
T Consensus 144 ~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~-p~~e~~~~~gi~~~ 214 (372)
T PRK06019 144 RGGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFY-PLVENVHRNGILRT 214 (372)
T ss_pred CCCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEe-CCcccEEeCCEEEE
Confidence 865 899999999999999988754 35789999999988999999999888887653 22223444454555
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
...|+ .+++++.+++.+.+.+++++|||.|++++||+++++|++||+|||||++++..++..++++|+++.+++..+|.
T Consensus 215 ~~~pa-~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Gl 293 (372)
T PRK06019 215 SIAPA-RISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGL 293 (372)
T ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCC
Confidence 67888 58999999999999999999999999999999998899999999999999877888899999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCC-CcCCCceecccCccceEEEEEEcC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSS-CPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~-~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
|++.. ...+.++...|..++. . ..+.......| +..+++.+. ...+ +.-+|+|.+.|.
T Consensus 294 pl~~~-------~~~~~~~m~nilg~~~---~--~~~~~~~~~~~-~~~~~~ygk~~~~~--------~rk~Ghv~~~~~ 352 (372)
T PRK06019 294 PLGTT-------RLLSPAVMVNLLGDDW---L--EPRWDALLALP-GAHLHLYGKAEARP--------GRKMGHVTVLGD 352 (372)
T ss_pred CCCCc-------cccCceEEEEEECchh---h--hhHHHHHhhCC-CCEEEECCCCCCCC--------CCceEEEEeecC
Confidence 87522 2233355555654331 0 01111111122 223444411 1122 334999999999
Q ss_pred CHHHHHHHHHHHhh
Q psy15244 455 TYKSSCEKMRRALE 468 (1427)
Q Consensus 455 ~~~eA~~r~~raL~ 468 (1427)
|.+++.++++++..
T Consensus 353 ~~~~~~~~~~~~~~ 366 (372)
T PRK06019 353 DVEALLAKLEALAP 366 (372)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999876
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=370.50 Aligned_cols=382 Identities=16% Similarity=0.236 Sum_probs=288.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
.+||||+|.|..+..++++++++|+++++++.+++ ++...++|..+.++ +.|.+.++++++++++|+|+|
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~--~~~~~~ad~~~~~~--------~~d~~~l~~~~~~~~id~vi~ 81 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSHVID--------MLDGDALRAVIEREKPDYIVP 81 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchHHhhhheEECC--------CCCHHHHHHHHHHhCCCEEEE
Confidence 56999999999999999999999999999988776 45556788877653 467899999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHH-HhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAA-LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a-~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
+.+... ......+++.|+++ .|++++++++.||..+|+++ +++|||+|++. .+.+.+++.++++++|||+||||
T Consensus 82 ~~e~~~--~~~~~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~--~~~s~~~l~~~~~~~g~P~VvKP 156 (395)
T PRK09288 82 EIEAIA--TDALVELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYR--FADSLEELRAAVEEIGYPCVVKP 156 (395)
T ss_pred eeCcCC--HHHHHHHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCce--EECCHHHHHHHHHhcCCCEEEEe
Confidence 876543 23345567779874 49999999999999999998 48999999987 78999999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
..|+||+|+++|++.+||.++++.+...++ -.++.++|||||+++.|+++.++.+++|........+ ..+..+....
T Consensus 157 ~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (395)
T PRK09288 157 VMSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQEDGDYRE 233 (395)
T ss_pred CCCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-cEEECCEEEE
Confidence 999999999999999999999987654321 1136899999999889999999998765554432211 1111122233
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
...|+ .++++..+++.+.+.+++++||+.|++|+||+++++ .+|+||+|||+++...++....|+|+++++++.++|.
T Consensus 234 ~~~p~-~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~ 311 (395)
T PRK09288 234 SWQPQ-PMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD-EVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGL 311 (395)
T ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-eEEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCC
Confidence 45677 589999999999999999999999999999999877 5999999999998754443345999999999999998
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++++.. ...+..+.++++.+.. .....|.......|+. .+++. |. ........+|+|++.|+|
T Consensus 312 ~~~~~~~-------~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~g~-~~~~~------~k-~~~~~~~~lG~v~~~g~~ 375 (395)
T PRK09288 312 PIPDIRL-------YSPAASAVILAEGESA-NPSFDGLAEALAVPGT-DVRLF------GK-PEIRGGRRMGVALATGED 375 (395)
T ss_pred CCCcccc-------cCCceeEEEecccccc-ccchhhHHHHhcCCCC-EEEEe------cC-CCCCCCCeeEEEEeecCC
Confidence 7743221 2223333445443211 1111121111111211 22222 11 112223459999999999
Q ss_pred HHHHHHHHHHHhhccEEcc
Q psy15244 456 YKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~G 474 (1427)
.++|.+++.++++.+++.|
T Consensus 376 ~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 376 VEEAREKAKEAASKVKVVG 394 (395)
T ss_pred HHHHHHHHHHHHhheeecc
Confidence 9999999999999999987
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=359.39 Aligned_cols=252 Identities=15% Similarity=0.205 Sum_probs=213.4
Q ss_pred EEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCcee
Q psy15244 660 LLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIPFQ 736 (1427)
Q Consensus 660 ~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~~q 736 (1427)
..+|||||||+|++. ..|++++|++|++.|++ +|++.||++.|+. ++...+.++.+.+.. +++.+.
T Consensus 3 ~~~d~tlRDG~Q~~g-~~~s~~~Ki~ia~~L~~--~Gv~~IE~gfP~~--------~~~e~e~~~~i~~~~~~~~~~~~~ 71 (284)
T cd07942 3 IWCSVDLRDGNQALA-EPMSVEQKLRFFKLLVK--IGFKEIEVGFPSA--------SQTDFDFVRELIEEDLIPDDVTIQ 71 (284)
T ss_pred cccCCCCCCcCCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHHccCCCCCCEEE
Confidence 357999999999985 78999999999999999 8999999987653 445567777775542 467777
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhc--CCC--EEEEeccCChHH--------------HHHHHHHHHHHhcCCCcE
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQA--GID--IFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTI 798 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gid--~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~ 798 (1427)
.|.|. .+.++++|.++ |++ .+.+|.+.|+.+ .+.++++++++.|....-
T Consensus 72 al~r~-------------~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~ 138 (284)
T cd07942 72 VLTQA-------------REDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPE 138 (284)
T ss_pred EEcCC-------------ChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccC
Confidence 88775 34458888887 676 799999999875 356678889988861000
Q ss_pred EEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC---CC---CEEEEccccCcCCHHHHHHHHHHHHHHcC---CceEEE
Q psy15244 799 VEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES---GA---QVLCLKDMAGLLKPTAAKLLIGSFREKYP---NILIHV 869 (1427)
Q Consensus 799 v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~---Ga---d~i~i~Dt~G~l~P~~~~~lv~~lr~~~p---~ipi~~ 869 (1427)
....+. |..+|++|.+++|++++++.+.++ |+ ++|+|+||+|.++|.+++++++.+++.+| +++|++
T Consensus 139 ~~~~~~----~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~ 214 (284)
T cd07942 139 TDWRFE----YSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISL 214 (284)
T ss_pred ceEEEE----ECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 112223 347899999999999999999887 54 49999999999999999999999999986 567999
Q ss_pred eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy15244 870 HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRK 939 (1427)
Q Consensus 870 H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~ 939 (1427)
|+|||+|||+||+++|+++||++||+|++|+|+|+||++||+++++|+..|+++++|+++|.++++++++
T Consensus 215 H~Hnd~G~a~AN~laA~~aG~~~id~~~~g~GeRaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 215 HPHNDRGTGVAAAELALLAGADRVEGTLFGNGERTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred EecCCCchHHHHHHHHHHhCCCEEEeeCccCCccccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998999999999999999999863
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=360.68 Aligned_cols=223 Identities=25% Similarity=0.402 Sum_probs=196.2
Q ss_pred ccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccccc
Q psy15244 667 RDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVG 746 (1427)
Q Consensus 667 RDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vg 746 (1427)
|||+|+++ ..|++++|++|++.|++ +|+++||+| +.+.++++|+.++.+++.++++.+++++|.
T Consensus 1 RDG~Q~~~-~~~~~~~k~~i~~~L~~--~Gv~~iEvg--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----- 64 (237)
T PF00682_consen 1 RDGEQSNG-VAFSTEEKLEIAKALDE--AGVDYIEVG--------FPFASEDDFEQVRRLREALPNARLQALCRA----- 64 (237)
T ss_dssp THHHHHCS-TT--HHHHHHHHHHHHH--HTTSEEEEE--------HCTSSHHHHHHHHHHHHHHHSSEEEEEEES-----
T ss_pred CCcCcCCC-CCcCHHHHHHHHHHHHH--hCCCEEEEc--------ccccCHHHHHHhhhhhhhhcccccceeeee-----
Confidence 99999997 45999999999999999 799999999 346789999999999999999999999985
Q ss_pred ccCCCcchHHHHHHHHHhcCCCEEEEeccCCh--------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC
Q psy15244 747 YSNYSPAEVGAFCRLASQAGIDIFRVFDPLNS--------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP 812 (1427)
Q Consensus 747 y~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd--------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p 812 (1427)
..+.++..++.+.++|+++++++.++|+ ++.+..+++.+++.|. .+. + +.+
T Consensus 65 ----~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~---~v~----~----~~~ 129 (237)
T PF00682_consen 65 ----NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY---EVA----F----GCE 129 (237)
T ss_dssp ----CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS---EEE----E----EET
T ss_pred ----hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC---ceE----e----Ccc
Confidence 3444666667777799999999999999 7788999999999999 552 2 255
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 813 NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 813 ~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
+.++++++|+.++++.+.++|+|+|+||||+|.++|.+++++|+.+++++|+++|++|+|||+|||+||+++|+++||++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 130 DASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp TTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred ccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 77799999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEeccccCCCCCCCCcHHHHHHHHHhCC
Q psy15244 893 VDVAADSMSGICSQPAMGTIVSCLENTD 920 (1427)
Q Consensus 893 VD~av~GmG~~tgn~~lE~vv~~L~~~g 920 (1427)
||+|++|||+|+||++||+++++|+.+|
T Consensus 210 id~t~~GlG~~~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 210 IDGTLGGLGERAGNAPLEELVAALERMG 237 (237)
T ss_dssp EEEBGGGGSSTTSB-BHHHHHHHHHHT-
T ss_pred EEccCccCCCCCCCccHHHHHHHHhhcC
Confidence 9999999999999999999999999865
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=353.51 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=203.5
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCC-----ccEEeccCCCchhhhhhccccChHHHHHHHHHhCC-C
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNN-----LYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP-N 732 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G-----~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p-~ 732 (1427)
|.|+|||||||.|++. . |++++|++|++.|++ +| ++.||+++ | .+...+.++.+.+... .
T Consensus 1 i~i~d~tlRDG~Q~~~-~-~~~~~Kv~i~~~L~~--~G~~~~~v~~IE~~s---------~-~~~d~~~v~~~~~~~~~~ 66 (279)
T cd07947 1 IWITDTTFRDGQQARP-P-YTVEQIVKIYDYLHE--LGGGSGVIRQTEFFL---------Y-TEKDREAVEACLDRGYKF 66 (279)
T ss_pred CEEEeCCCCCcCCCCC-C-CCHHHHHHHHHHHHH--cCCCCCccceEEecC---------c-ChHHHHHHHHHHHcCCCC
Confidence 5799999999999975 4 599999999999999 79 99999832 2 2244555666555432 2
Q ss_pred CceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcE
Q psy15244 733 IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTI 798 (1427)
Q Consensus 733 ~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~ 798 (1427)
..+..++|+. .+.+++|.++|++.+.+|.|.|+.+ .+..+++++++.|. .
T Consensus 67 ~~v~~~~r~~-------------~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~---~ 130 (279)
T cd07947 67 PEVTGWIRAN-------------KEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGI---K 130 (279)
T ss_pred CEEEEEecCC-------------HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCC---e
Confidence 3455566652 4559999999999999999999875 45678889999998 7
Q ss_pred EEEEEEeeccCCCCCCCCCCH-----HHHHHHHHHHHHCCCC-EEEEccccCcCCH-------HHHHHHHHHHHHH--cC
Q psy15244 799 VEATICYAGDLTNPNKKKYSL-----NYYEDLAKQLVESGAQ-VLCLKDMAGLLKP-------TAAKLLIGSFREK--YP 863 (1427)
Q Consensus 799 v~~~i~~t~d~~~p~~~~~~~-----~~~~~~a~~l~~~Gad-~i~i~Dt~G~l~P-------~~~~~lv~~lr~~--~p 863 (1427)
+++++ + |+++.+. +|+.++++.+.++|++ +|+||||+|.++| .++++++++++++ +|
T Consensus 131 v~~~~---e-----d~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p 202 (279)
T cd07947 131 PRCHL---E-----DITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVP 202 (279)
T ss_pred EEEEE---E-----cccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCC
Confidence 77654 2 3334444 5788888888889999 8999999999998 6899999999998 56
Q ss_pred CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHH
Q psy15244 864 NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWR 938 (1427)
Q Consensus 864 ~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~ 938 (1427)
+++|++|+|||+|||+||+++|+++||++||+|++|||+++||++||+++++|+.+ |+++++|+++|.+++++++
T Consensus 203 ~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~ 278 (279)
T cd07947 203 SENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFE 278 (279)
T ss_pred CceEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999999998 9999999999999999875
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=362.39 Aligned_cols=386 Identities=15% Similarity=0.144 Sum_probs=281.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccC---ccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCC
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFS---AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVD 132 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s---~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vD 132 (1427)
|||++||++.+..+..++++|+++|++++++++..+... .....++....+ .+.+.+.++++++++++|
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~~l~~~~~~~~~d 72 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVI--------INGDIDDLVEFLRKLGPE 72 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhh--------cCCCHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999998765422 122223322222 236789999999999999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC---
Q psy15244 133 AIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF--- 209 (1427)
Q Consensus 133 aI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy--- 209 (1427)
+|+|+.+... ...+..++..|++ +|++++++..++||..||++++++|||+|++. .+.+.+++.++++++||
T Consensus 73 ~vi~~~e~~~--~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~--~~~~~~e~~~~~~~~g~~~~ 147 (416)
T PRK07206 73 AIIAGAESGV--ELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQI--NTADWEEAEAWLRENGLIDR 147 (416)
T ss_pred EEEECCCccH--HHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEE--ecCCHHHHHHHHHhcCCCCC
Confidence 9999875422 2234455667776 48999999999999999999999999999986 68899999999999998
Q ss_pred cEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEE--eeeecc
Q psy15244 210 PVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVH--LYERDC 285 (1427)
Q Consensus 210 PvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~--l~erd~ 285 (1427)
|+||||+.|+||+||++|++.+||.++++++.... ..++ +..+++|+||+ |.|++++++.. +|+++. +..+..
T Consensus 148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~-G~E~sv~~~~~-~G~~~~~~~~~~~~ 224 (416)
T PRK07206 148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLI-GTEYVVNFVSL-DGNHLVTEIVRYHK 224 (416)
T ss_pred CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEccc-cEEEEEEEEEE-CCEEEEEEeEEeee
Confidence 99999999999999999999999999998875421 1122 46899999999 78999999974 355443 222211
Q ss_pred ccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcCCCcEEEEeeCCCCCCc--hhHHHHHhCC
Q psy15244 286 SMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDKDDNFYFIEVNPRLQVE--HTLSEEITGI 362 (1427)
Q Consensus 286 s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~dG~~yfIEINpRl~ge--~~vte~~tGi 362 (1427)
........+.........+....+++.+.+.++++++|+. |++|+||+++++| +|+||||||++|+ ..+++.++|+
T Consensus 225 ~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEin~R~~G~~~~~~~~~~~G~ 303 (416)
T PRK07206 225 TSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEIGARLDGGLHPDVARLATGD 303 (416)
T ss_pred cccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEECCccCCCCccchhhhhcCc
Confidence 1111111111111111135677899999999999999996 9999999999877 8999999999987 4678899999
Q ss_pred CHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeC----CCCCcccccCCCcCCCcee
Q psy15244 363 DVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTD----PASIGIRVDSSCPYPGLQI 438 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~----p~~~gvr~d~~~~~~G~~I 438 (1427)
|+.+++++.++|.+.... ..+......+++....+. .|..|++..+.. ...+++..-..+...|+.|
T Consensus 304 d~~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v 374 (416)
T PRK07206 304 SQLDATVESLADPDVFRE-TLREGYRLKAHVFNVFLI--------SPAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYV 374 (416)
T ss_pred CHHHHHHHHHhCchhhcc-ccCCCcChhhceEEEEEe--------cCCCceEeCCccHHHHHhCCchhheEEecCCCCCc
Confidence 999999999999864211 111112223333222222 244566654321 1122332222346789999
Q ss_pred cccCcc--ceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 439 SPDYDS--LLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 439 ~~~~Ds--~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
.+..|+ .+|++++.|+|.+++.+..+++-
T Consensus 375 ~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~ 405 (416)
T PRK07206 375 PQTVDLFSQPGTVYLVHKDKEQLWQDYEKIR 405 (416)
T ss_pred cCceecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 877664 49999999999999888765543
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=350.81 Aligned_cols=309 Identities=20% Similarity=0.310 Sum_probs=257.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY 138 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~ 138 (1427)
+|+|+|.|+.+.+++++|+++|+++++++.+++ ++...+||+.+.. +|.|.+.|.+++++ +|.|.+.+
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~--~p~~~~ad~~~~~--------~~~d~~~i~~~a~~--~dvit~e~ 68 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDAN--SPAVQVADHVVLA--------PFFDPAAIRELAES--CDVITFEF 68 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCC--CChhHhCceeEeC--------CCCCHHHHHHHHhh--CCEEEeCc
Confidence 489999999999999999999999999877665 6777889998743 37888999999987 57776544
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCC
Q psy15244 139 GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFG 218 (1427)
Q Consensus 139 gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~G 218 (1427)
+.++ ......+++.|++ ++|++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||+|+||..|
T Consensus 69 e~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~ 143 (352)
T TIGR01161 69 EHVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFL--VIKDEEELDAALQELGFPVVLKARTG 143 (352)
T ss_pred CcCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCcc--EeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 4332 3456778888876 56999999999999999999999999999987 78899999999999999999999998
Q ss_pred C-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEE
Q psy15244 219 G-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297 (1427)
Q Consensus 219 g-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~ 297 (1427)
+ ||+|+++|++.+|+.++++.. ++..+++||||++++|++|.++.+.+|++.. +......++.+......
T Consensus 144 g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~-~~~~~~~~~~g~~~~~~ 214 (352)
T TIGR01161 144 GYDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAF-YPVVENIHQDGILRYVV 214 (352)
T ss_pred CCCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEE-ECCcccEEeCCEEEEEE
Confidence 6 999999999999999888653 2458999999998899999999887787654 33323344444445567
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCC
Q psy15244 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377 (1427)
Q Consensus 298 aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l 377 (1427)
.|+ .++++..+++.+.+.+++++|||.|++++||+++++|++||+|||||++++..++...+++|.++.+++.++|.++
T Consensus 215 ~p~-~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l 293 (352)
T TIGR01161 215 APA-AVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPL 293 (352)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCC
Confidence 788 6899999999999999999999999999999999989999999999999887778889999999999999999998
Q ss_pred ccccccccCcccceEEEEEEeecC
Q psy15244 378 TELGLCQEKITPQGCAIQCHLRTE 401 (1427)
Q Consensus 378 ~~l~l~q~~i~~~g~ai~~ri~ae 401 (1427)
+.. .....++...+...
T Consensus 294 ~~~-------~~~~~~~m~n~~~~ 310 (352)
T TIGR01161 294 GST-------ELLLPSVMVNLLGT 310 (352)
T ss_pred CCc-------cccCCEEEEEEecC
Confidence 632 22333555566544
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=353.86 Aligned_cols=400 Identities=15% Similarity=0.164 Sum_probs=283.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
++||||+|.|.-...+++++++.++.+.+...+.+. .. +...... ...-++.|.+.|+++|+++++|+|++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~-g~----~~~~~~~----~~~~~~~d~~~l~~~a~~~~iD~Vv~ 74 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNG-GF----PDDELLP----ADSFSILDKSSVQSFLKSNPFDLIVV 74 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCch-HH----hcccccc----ccCcCcCCHHHHHHHHHHcCCCEEEE
Confidence 469999999988888999999999654433333322 11 1111000 00124689999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
+.+... ...+++.|+++|++++||+..++++++||..+|++|+++|||+|++. .+.+.+++.+++++++||+||||.
T Consensus 75 g~E~~l-~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~--~~~~~~ea~~~~~~~~~PvVVKp~ 151 (426)
T PRK13789 75 GPEDPL-VAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYK--TFTEYSSSLSYLESEMLPIVIKAD 151 (426)
T ss_pred CCchHH-HHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeE--eeCCHHHHHHHHHhcCCCEEEEeC
Confidence 874211 12577889999999999999999999999999999999999999986 688999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eeccc------c
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERDCS------M 287 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd~s------~ 287 (1427)
.++||+||++|++.+|+.++++.+... ..|| +..++|||||+ |+|+++.++.|+. +++.+. .+|.. .
T Consensus 152 ~~~~gkGV~vv~~~eel~~a~~~~~~~--~~~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~-~~~~lp~~~d~k~~~d~d~ 227 (426)
T PRK13789 152 GLAAGKGVTVATEKKMAKRALKEIFKD--KKFGQSGNQVVIEEFME-GQEASIFAISDGD-SYFLLPAAQDHKRAFDGDQ 227 (426)
T ss_pred CCCCCCcEEEECCHHHHHHHHHHHHhh--ccccCCCCeEEEEECcC-CeEEEEEEEECCC-EEEEccceEecccccCCCC
Confidence 999999999999999999999987654 2344 34899999999 6999999999864 443331 22211 1
Q ss_pred ccccceEEEEccCCCCCHHHHHHHHH-HHHHHH---HHcC--CCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHHHh
Q psy15244 288 QRRYQKVIQIAPAQDMSVSVRDAITE-TSVRLA---KSLG--YSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEEIT 360 (1427)
Q Consensus 288 qr~~qk~ie~aPa~~l~~e~~~~l~~-~a~~l~---~alg--~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~~t 360 (1427)
..+...+..++|++.++++..+++.+ .+.+++ ++.| |+|+.++||+++++|++|++|+|+|++.. .+..-...
T Consensus 228 g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l 307 (426)
T PRK13789 228 GPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAML 307 (426)
T ss_pred CCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccC
Confidence 11234567888998789888888865 344444 5556 78999999999998999999999999742 33333335
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCcccccC-CCcCCCcee
Q psy15244 361 GIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIGIRVDS-SCPYPGLQI 438 (1427)
Q Consensus 361 GiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~gvr~d~-~~~~~G~~I 438 (1427)
..||++.+++++.|+. +...+.. ..++++.. +.+..... ..+..|. |. +......++++.. +....+..+
T Consensus 308 ~~dl~~~~~~~~~g~l-~~~~~~~----~~~~s~~v-v~a~~gyp-~~~~~g~~i~-~~~~~~~~~~if~a~~~~~~~~~ 379 (426)
T PRK13789 308 DGDLLELLYAASTGKI-KVVNLKL----KQGAAAVV-VLAAQGYP-DSYEKNIPLN-LPETSGQNVVLFHAGTKKKDGKV 379 (426)
T ss_pred CCCHHHHHHHHHcCCC-CCCCcee----cCCceEEE-EECcCCcC-CCcCCCCEEe-ccCcCCCCcEEEEeeeeeeCCEE
Confidence 6899999999999962 2222211 12344433 33332221 1233454 33 3211113444431 111122223
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
.. ..+.+..|++.|.|.++|+++++++++.+++.|. ++.|..
T Consensus 380 ~t-~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~Dig~ 423 (426)
T PRK13789 380 FS-SGGRILGIVAQGKDLKDSVDQAYSFLEKIQAPKTFYRKDIGR 423 (426)
T ss_pred Ee-CCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEeccccc
Confidence 22 2455677889999999999999999999999984 566543
|
|
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=349.80 Aligned_cols=326 Identities=15% Similarity=0.120 Sum_probs=276.3
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR 740 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R 740 (1427)
|+|||||||+|+. +..++++++++++..|++ .|++.||+|.++. .+++|+..+.+........+
T Consensus 1 i~D~TlRDG~q~~-~~~~~~~~ki~i~~~l~~--~Gv~~iE~g~p~~--------~~~~~~~~~~~~~~~~~~~~----- 64 (344)
T TIGR02146 1 IIDSTLREGEQFP-GANFSTEQKIEIAKALDE--FGIDYIEVTHPAA--------SKQSRIDIEIIASLGLKANI----- 64 (344)
T ss_pred CCCCCCCccCcCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CHHHHHHHHHHHhcCCCcEE-----
Confidence 6899999999977 478999999999999999 8999999997653 34455555555543322222
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHH--------------HHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPN--------------LVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~--------------~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
+++.... ...++.+.++|++.++++.+.+++++ +..+++.+++.|. .+...++
T Consensus 65 ----~~~~~~~----~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~---~~~~~~~-- 131 (344)
T TIGR02146 65 ----VTHIRCR----LDDAKVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGL---EVRFSAE-- 131 (344)
T ss_pred ----EEECCCC----HHHHHHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEEEEe--
Confidence 2332221 22377888999999999999998753 3457778888887 5544433
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
++.+.+.++++++++.+.++|++.++++||.|.++|.+++.+|..+++..|++++++|+|||.|+|++|+++|+
T Consensus 132 ------~~~~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al 205 (344)
T TIGR02146 132 ------DTFRSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAI 205 (344)
T ss_pred ------eCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 23478899999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYS 965 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~ 965 (1427)
.+||+++|+|++|||+|+||++++.++..|... ++.. +|+..+.++++.+....+++++.+.|++|.++|.|.+++|.
T Consensus 206 ~~ga~~~d~s~~glG~~~G~~~l~~~~~~L~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~ 284 (344)
T TIGR02146 206 EGGATIVDTTVLGIGERNGITPLGGILARLYYHTPMYV-YKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHV 284 (344)
T ss_pred HcCCCEEEEEeeeeeCCCCCccHHHHHHHHHHhcCCCc-cCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhH
Confidence 999999999999999999999999999988865 4443 79999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHH
Q psy15244 966 SYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTAN 1025 (1427)
Q Consensus 966 ~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~ 1025 (1427)
+.+.+.+..|++++ |+..|..+.++.++.+|. ++++..++++|+ ..+++.+.+.+++
T Consensus 285 ~~~~~~~~~y~~~~-~s~~g~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (344)
T TIGR02146 285 KAILGNPRTYEFLP-PEVFGRKRHILIARLTGK--HAIKARKEKLGVKLIEEELKRVTAKIK 343 (344)
T ss_pred HHHhCCcccCCCCC-HHHcCCcceEeeeccccH--HHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 99999999999999 666667788899999996 489999999999 6667777777664
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=388.08 Aligned_cols=365 Identities=19% Similarity=0.325 Sum_probs=292.2
Q ss_pred CCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 56 TMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 56 ~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
..+||||+|.|++ ++.++++++++|+++++++++++..+.....+|..|..+ .+.+.+++
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep---------~~~e~vl~ 623 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEP---------LTFEDVMN 623 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEec---------CCHHHHHH
Confidence 3579999999986 568899999999999999999988777778899887743 45899999
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
+++++++|+|+|++|... ...++..|++.|++++|+++++++.+.||..++++|+++|||+|++. .+.+.+++.+++
T Consensus 624 i~~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~--~v~s~ee~~~~~ 700 (1050)
T TIGR01369 624 IIELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWK--TATSVEEAVEFA 700 (1050)
T ss_pred HHhhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHH
Confidence 999999999999987532 23578899999999999999999999999999999999999999987 789999999999
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEe--ee
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL--YE 282 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l--~e 282 (1427)
+++|||+||||++++||+||.+|++.+||.++++++... ..+++++||+||++++|++|++++|+ |+++.. .+
T Consensus 701 ~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~----s~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e 775 (1050)
T TIGR01369 701 SEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEV----SPEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIME 775 (1050)
T ss_pred HhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHh----CCCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEE
Confidence 999999999999999999999999999999999876543 23578999999999999999999986 454432 23
Q ss_pred eccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCC
Q psy15244 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGI 362 (1427)
Q Consensus 283 rd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGi 362 (1427)
+......+........|+..++++..+++.+++.+++++||+.|++|+||++++ |++|+||+|||++++.++++.++|+
T Consensus 776 ~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~-~~~yvIEvNpR~s~t~p~vs~atGi 854 (1050)
T TIGR01369 776 HIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD-GEVYVIEVNPRASRTVPFVSKATGV 854 (1050)
T ss_pred eecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC-CeEEEEEEeCCCCchHHHHHHHHCC
Confidence 211111122334456687789999999999999999999999999999999985 5699999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccC
Q psy15244 363 DVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDY 442 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~ 442 (1427)
|+++..+++++|.++++++... .......++...++ +.-++.. ....+.|..
T Consensus 855 ~l~~~~~~~~lG~~l~~~~~~~-~~~~~~~~vK~p~f-----------------------~~~~~~~----~d~~lg~em 906 (1050)
T TIGR01369 855 PLIKLATRVMLGKKLEELGVGK-EKEPKYVAVKEPVF-----------------------SFSKLAG----VDPVLGPEM 906 (1050)
T ss_pred CHHHHHHHHHcCCCcccccccc-CCCCCeEEEEeccC-----------------------ChhhcCC----CCCcCCcee
Confidence 9999999999999987553211 11122333332222 1111110 001122223
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 443 DSLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 443 Ds~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
.| .|-++..|+|+++|+.|+..+.
T Consensus 907 ks-tge~~~~g~~~~~a~~ka~~~~ 930 (1050)
T TIGR01369 907 KS-TGEVMGIGRDLAEAFLKAQLSS 930 (1050)
T ss_pred Ee-cCceEecCCCHHHHHHHHHHhC
Confidence 33 6778999999999999987665
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=353.52 Aligned_cols=394 Identities=16% Similarity=0.183 Sum_probs=277.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHc-CCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 58 EKILIANRSEVAIRVARACNEM-GIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~el-Gi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
.||||+|.|.....+++++++. |+.++.+..... .. ...++ .+. -++.|.+.|+++|+++++|+|++
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n~--g~-~~~~~-~~~--------~~~~d~~~l~~~~~~~~id~vi~ 68 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNA--GT-ALLAE-NVV--------IDVTDIEALVAFAKEEGIDLTVV 68 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCCH--HH-Hhhcc-ccC--------CCCCCHHHHHHHHHHhCCCEEEE
Confidence 3899999998888899999986 555555522211 11 12222 221 23578999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
+.+... ...+++.+++.|++++||++++++.++||..+|++|+++|||+|++. .+.+.+++.++++++|||+||||.
T Consensus 69 ~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKP~ 145 (420)
T PRK00885 69 GPEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYE--TFTDAEEALAYLDEKGAPIVVKAD 145 (420)
T ss_pred CCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEeC
Confidence 865321 22567789999999999999999999999999999999999999986 688999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eecccc------
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERDCSM------ 287 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd~s~------ 287 (1427)
.|+||+||++|++.+|+.++++.+.+.. .|+ +..++|||||+ |+|+++.++.|+. ++..+. .++...
T Consensus 146 ~~~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~-G~E~sv~~~~~g~-~~~~~~~~~~~~~~~~~~~ 221 (420)
T PRK00885 146 GLAAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLD-GEEASFFAFVDGE-NVLPLPTAQDHKRAGDGDT 221 (420)
T ss_pred CCCCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccC-CcEEEEEEEECCC-ceEeceeeEeeeecccCCC
Confidence 9999999999999999999998876532 233 35899999999 7999999999864 444332 221110
Q ss_pred ccccceEEEEccCCCCCHHHHHHHHH-HHHH---HHHHcC--CCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHHHh
Q psy15244 288 QRRYQKVIQIAPAQDMSVSVRDAITE-TSVR---LAKSLG--YSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEEIT 360 (1427)
Q Consensus 288 qr~~qk~ie~aPa~~l~~e~~~~l~~-~a~~---l~~alg--~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~~t 360 (1427)
..+...+...+|++.++++..+++.+ .+.+ .++++| |.|+.|+||+++++| +|+||+|||+++. +......+
T Consensus 222 ~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~ 300 (420)
T PRK00885 222 GPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRL 300 (420)
T ss_pred CCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhc
Confidence 11123345667887788877766654 4444 444545 569999999999877 9999999999865 54555567
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCcccccC-CCcCCCcee
Q psy15244 361 GIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIGIRVDS-SCPYPGLQI 438 (1427)
Q Consensus 361 GiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~gvr~d~-~~~~~G~~I 438 (1427)
+.|+++.+++++.|...+ +++.. .++.++...+ +.... -..|..|. |....... ++.+.. +....+..+
T Consensus 301 ~~d~~~~~~~~~~g~~~~-~~~~~----~~~~a~~~~~-~~~gy-~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 371 (420)
T PRK00885 301 KSDLVELLLAAADGKLDE-VELEW----DDRAAVGVVL-AAKGY-PGDYRKGDVITGLEAAD--ADKVFHAGTKLEDGKL 371 (420)
T ss_pred cCCHHHHHHHHHcCCCCC-CCceE----CCCcEEEEEE-eCCCC-CCCCCCCCEeecccccC--CCEEEECceeccCCeE
Confidence 889999999999997532 22211 1334443322 22111 11232332 22111111 111110 100011111
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
.. ..+.++.|++.|.|++||.++++++++.+++.|. ++.|.+
T Consensus 372 ~~-~g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~~~r~dig~ 415 (420)
T PRK00885 372 VT-NGGRVLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRDIGY 415 (420)
T ss_pred EE-eCCEEEEEEEecCCHHHHHHHHHHHHhccCCCCCEeechhhh
Confidence 11 2355999999999999999999999999999985 777766
|
|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=352.15 Aligned_cols=398 Identities=15% Similarity=0.179 Sum_probs=287.1
Q ss_pred EEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCc
Q psy15244 61 LIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGF 140 (1427)
Q Consensus 61 LIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gf 140 (1427)
||+|.|.-.-.++.++++..... -+|..+. .+....+++.+.++ + -++.|.+.|+++|+++++|+|++|+++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~-~~~~~pg--n~g~~~~~~~~~vp----~-~~~~d~~~l~~~a~~~~id~vvvg~E~ 72 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCD-AVFCAPG--NAGIATSGDATCVP----D-LDISDSAAVISFCRKWGVGLVVVGPEA 72 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCC-EEEECCC--CHHHhhhccceeec----C-CCCCCHHHHHHHHHHcCCCEEEECCch
Confidence 78999977778999998876322 2333333 23334455555553 1 245789999999999999999999754
Q ss_pred ccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCC
Q psy15244 141 LSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGG 220 (1427)
Q Consensus 141 lsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgG 220 (1427)
..- +.+++.+++.|++++||+++++++++||..+|++|+++|||+|++. .+.+.+++.++++++|||+||||..++|
T Consensus 73 ~lv-~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~--~~~~~~e~~~~~~~~g~PvVVKp~~~~~ 149 (434)
T PLN02257 73 PLV-AGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYE--TFTDPAAAKKYIKEQGAPIVVKADGLAA 149 (434)
T ss_pred HHH-HHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 221 3788899999999999999999999999999999999999999986 6889999999999999999999999999
Q ss_pred CcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeeee-cc------cccccc
Q psy15244 221 GRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER-DC------SMQRRY 291 (1427)
Q Consensus 221 GrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~er-d~------s~qr~~ 291 (1427)
|+||+++++.+|+.++++.+... ..|+ +..++|||||+ |+|++++++.|+. +++.+.+- |. ....+.
T Consensus 150 GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~-G~E~Sv~~~~dG~-~~~pl~~~~dhkr~~d~d~g~nt 225 (434)
T PLN02257 150 GKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLD-GEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNT 225 (434)
T ss_pred CCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCC-CCEEEEEEEECCC-cEEEEEeeeecccccCCCCCCCC
Confidence 99999999999999999887542 3354 46899999999 7799999999865 55555321 10 011113
Q ss_pred ceEEEEccCCCCCHHHHHHHHHH-HH---HHHHHcC--CCCeEEEEEEEc-CCCcEEEEeeCCCCC-CchhHHHHHhCCC
Q psy15244 292 QKVIQIAPAQDMSVSVRDAITET-SV---RLAKSLG--YSNAGTVEFLLD-KDDNFYFIEVNPRLQ-VEHTLSEEITGID 363 (1427)
Q Consensus 292 qk~ie~aPa~~l~~e~~~~l~~~-a~---~l~~alg--~~G~~~VEflvd-~dG~~yfIEINpRl~-ge~~vte~~tGiD 363 (1427)
..+.+.+|++.++++.++++.+. +. +.+++.| |.|++++||+++ ++|++||||+|+|+| .|+.++...++.|
T Consensus 226 ggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~D 305 (434)
T PLN02257 226 GGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESD 305 (434)
T ss_pred CCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCC
Confidence 45667888888999888876443 33 4444555 568899999998 678899999999999 4577777779999
Q ss_pred HHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCC-ceeeeeCCC--CCcccccC-CCcC-CCcee
Q psy15244 364 VVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTG-RLDVFTDPA--SIGIRVDS-SCPY-PGLQI 438 (1427)
Q Consensus 364 Lv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G-~i~~~~~p~--~~gvr~d~-~~~~-~G~~I 438 (1427)
|++++++++.|+ |+.+++.+. .++++ |-+.+..... ..+..| .|..+.... .+++.+.. +... .+..+
T Consensus 306 l~~~~~~~~~g~-l~~~~~~~~----~~~av-~vv~a~~gYp-~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~ 378 (434)
T PLN02257 306 LAQVLLAACKGE-LSGVSLTWS----PDSAM-VVVMASNGYP-GSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNV 378 (434)
T ss_pred HHHHHHHHHcCC-CCCCCceEC----CCceE-EEEEcCCCCC-CCCCCCCEeeCCccccccCCCCEEEECCceEccCCEE
Confidence 999999999997 332222221 23343 3334333211 123333 233332211 12322221 1111 12222
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
.. .++.+..|++.|.|.++|+++++++++.+++.|. ++.|.+
T Consensus 379 ~t-~ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~DIg~ 422 (434)
T PLN02257 379 VA-AGGRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDIGW 422 (434)
T ss_pred EE-CCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhH
Confidence 22 2456888999999999999999999999999984 677766
|
|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=377.43 Aligned_cols=380 Identities=18% Similarity=0.227 Sum_probs=295.6
Q ss_pred CCEEEEEcC--CHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhc-CCCE
Q psy15244 57 MEKILIANR--SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNN-NVDA 133 (1427)
Q Consensus 57 ~kkVLIagr--Geia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~-~vDa 133 (1427)
.++|++++. ..++..++++++++|++++++.+++.....+...+|..+.. ++.|.+.+++++++. .+++
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~--------d~~d~~~l~~~~~~~~~i~~ 73 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISA--------DTSDPDRIHRFVSSLDGVAG 73 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEc--------CCCCHHHHHHHHHhcCCCCE
Confidence 357888774 44567789999999999999987665433223235555443 357889999999987 6899
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEE
Q psy15244 134 IHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVIL 213 (1427)
Q Consensus 134 I~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVV 213 (1427)
|+++.++.. ...++.++..|++ |++++++..++||..+|++++++|||+|++. .+.+.+++.++++.++||+||
T Consensus 74 V~~~se~~v--~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~--~v~~~~e~~~~~~~~~~PvVV 147 (887)
T PRK02186 74 IMSSSEYFI--EVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTH--ALALRAVALDALDGLTYPVVV 147 (887)
T ss_pred EEeCchhhH--HHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHhCCCCEEE
Confidence 998865433 3456788888987 8999999999999999999999999999986 788999999999999999999
Q ss_pred eecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccccc-EEEeeeeccccccccc
Q psy15244 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD-VVHLYERDCSMQRRYQ 292 (1427)
Q Consensus 214 KP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~-vv~l~erd~s~qr~~q 292 (1427)
||..|+||+||++|++.+|+.++++.+.+ .+++++++||||+ |+|++|+++.++.+. ++.+..+.......+.
T Consensus 148 KP~~g~gS~GV~~v~~~~el~~a~~~~~~-----~~~~~~lvEEfI~-G~E~sVe~i~~~g~~~i~~i~~k~~~~~~~~v 221 (887)
T PRK02186 148 KPRMGSGSVGVRLCASVAEAAAHCAALRR-----AGTRAALVQAYVE-GDEYSVETLTVARGHQVLGITRKHLGPPPHFV 221 (887)
T ss_pred EeCCCCCCCCeEEECCHHHHHHHHHHHHh-----cCCCcEEEeeccc-CCcEEEEEEEECCcEEEEEEEeeecCCCCCeE
Confidence 99999999999999999999999887643 2367899999999 799999999875432 3334443333223344
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcCCCcEEEEeeCCCCCCch--hHHHHHhCCCHHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDKDDNFYFIEVNPRLQVEH--TLSEEITGIDVVQSQI 369 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~dG~~yfIEINpRl~ge~--~vte~~tGiDLv~~~i 369 (1427)
...+..|+ .++++..+++.+.+.++++++|+. |++|+||+++++| +||||||||++|++ .+++.++|+|++++++
T Consensus 222 e~g~~~P~-~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 222 EIGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred EeccccCC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 45556788 488899999999999999999997 9999999999765 99999999999883 5788999999999999
Q ss_pred HHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeC-----CCCCcccccCCCcCCCceecccCc-
Q psy15244 370 KIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTD-----PASIGIRVDSSCPYPGLQISPDYD- 443 (1427)
Q Consensus 370 ~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~-----p~~~gvr~d~~~~~~G~~I~~~~D- 443 (1427)
+.++|.++.. ........++...+ .+..|++..+.. +..+++++. ....+|+.|.+..|
T Consensus 300 ~~~lG~~~~~-----~~~~~~~~ai~~~~---------~~~~G~i~~i~~~~~~~~~~~~~~~~-~~~~~G~~v~~~~~~ 364 (887)
T PRK02186 300 DLHLGVAAFA-----DPTAKRYGAIRFVL---------PARSGVLRGLLFLPDDIAARPELRFH-PLKQPGDALRLEGDF 364 (887)
T ss_pred HHhCCCCCCC-----CCCCCCeEEEEEEe---------cCCCceEEecccchhhcccCCeEEEE-EecCCCCEecCCCCC
Confidence 9999997642 11122233333222 244677765532 223344433 34678999876544
Q ss_pred -cceEEEEEEcCCHHHHHHHHHHHhhccEEc
Q psy15244 444 -SLLAKIIVHTATYKSSCEKMRRALEETQVS 473 (1427)
Q Consensus 444 -s~l~kvi~~G~~~~eA~~r~~raL~e~~I~ 473 (1427)
+.+|+|+++|+|++++.+++.++++.++|+
T Consensus 365 ~~~~g~vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 365 RDRIAAVVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred CCccEEEEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 569999999999999999999999999884
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=381.54 Aligned_cols=365 Identities=22% Similarity=0.382 Sum_probs=290.1
Q ss_pred CCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 56 TMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 56 ~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
..+||||+|.|++ ++.++++++++|+++++++++++..+.+...+|..|..+ .+.+.|++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep---------~~~e~vl~ 624 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEP---------LTLEDVLN 624 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEcc---------CCHHHHHH
Confidence 4789999999875 345799999999999999999998888888999988754 45899999
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
+++++++|+|+|++|... ...++..+++.|++++|++++++..+.||..++++|+++|||+|++. .+.+.+++.+++
T Consensus 625 I~~~e~~dgVI~~~g~~~-~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~--~~~s~ee~~~~~ 701 (1068)
T PRK12815 625 VAEAENIKGVIVQFGGQT-AINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGL--TATDEEEAFAFA 701 (1068)
T ss_pred HHhhcCCCEEEEecCcHH-HHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHH
Confidence 999999999999876432 23578889999999999999999999999999999999999999987 789999999999
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE-eeee
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH-LYER 283 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~-l~er 283 (1427)
+++|||+||||++++||+||++|++.+||..+++.+. ..++++++|+||+ |.|++|++++|+...++. +.++
T Consensus 702 ~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~-G~E~~Vd~i~dg~~v~i~~i~e~ 774 (1068)
T PRK12815 702 KRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFID-GKEYEVDAISDGEDVTIPGIIEH 774 (1068)
T ss_pred HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeec-CceEEEEEEEcCCceEEeeEEEE
Confidence 9999999999999999999999999999999988761 2357899999998 789999999997543321 2222
Q ss_pred ccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCC
Q psy15244 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGID 363 (1427)
Q Consensus 284 d~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiD 363 (1427)
......+........|+..++++..+++.+.+.+++++||+.|.+++||++++ |++|+||+|||+++..++++.++|+|
T Consensus 775 ~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~-~~~yviEiNpR~s~t~~~~skatGv~ 853 (1068)
T PRK12815 775 IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN-DEIYVLEVNPRASRTVPFVSKATGVP 853 (1068)
T ss_pred eeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC-CcEEEEEEeCCCCccHHHHHHHHCCC
Confidence 11111122234445676679999999999999999999999999999999986 56999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCc
Q psy15244 364 VVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYD 443 (1427)
Q Consensus 364 Lv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~D 443 (1427)
++++.+++++|.++.++++.. .+.|..+.+.. ..|-.+.-++.. ....+.|...
T Consensus 854 l~~~~~~~~lG~~l~~~~~~~---------------------~~~~~~~~~~v-k~p~f~f~~~~~----~~~~lg~~m~ 907 (1068)
T PRK12815 854 LAKLATKVLLGKSLAELGYPN---------------------GLWPGSPFIHV-KMPVFSYLKYPG----VDNTLGPEMK 907 (1068)
T ss_pred HHHHHHHHHcCCChhhccccc---------------------ccCCCCCeEEE-EeccCChhHccc----CCCccCCcce
Confidence 999999999999987553221 12233232221 222222112210 1112333334
Q ss_pred cceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 444 SLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 444 s~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
| .|-++..|+|+++|+.|+.++.
T Consensus 908 s-tGe~~~~~~~~~~a~~k~~~~~ 930 (1068)
T PRK12815 908 S-TGEVMGIDKDLEEALYKGYEAS 930 (1068)
T ss_pred E-cceeEeccCCHHHHHHHHHHhc
Confidence 4 7889999999999999987765
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=349.41 Aligned_cols=395 Identities=16% Similarity=0.219 Sum_probs=277.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||||+|.|..+..++++++++|+.+.++..+.+ ... ...+..+.+ .-++.|.+.|+++|+++++|+|+|+
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~------~~~~~d~~~l~~~~~~~~id~vi~~ 71 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGN-AGT--ARLAKNKNV------AISITDIEALVEFAKKKKIDLAVIG 71 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccEEEEECCC-HHH--hhhcccccc------cCCCCCHHHHHHHHHHhCCCEEEEC
Confidence 3899999999999999999999976444433322 111 222222221 1245789999999999999999998
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc-EEEeec
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP-VILKAA 216 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP-vVVKP~ 216 (1427)
.+... ...+++.++++|++++||++++++.++||..+|++++++|||+|++. .+.+.+++.++++++||| +|+||.
T Consensus 72 ~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~~~~g~P~~VvKp~ 148 (423)
T TIGR00877 72 PEAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYE--VFTDPEEALSYIQEKGAPAIVVKAD 148 (423)
T ss_pred CchHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhcCCCeEEEEEC
Confidence 75211 13567889999999999999999999999999999999999999986 788999999999999999 999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eeccc------c
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERDCS------M 287 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd~s------~ 287 (1427)
.|+||+|++++++.+|+.++++.+.+.. || +..+++|+||+ |.|+++.++.|+. .+..+. .++.. .
T Consensus 149 ~~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~-G~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~~ 223 (423)
T TIGR00877 149 GLAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLD-GEEVSLLAFVDGK-TVIPMPPAQDHKRALEGDK 223 (423)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECcc-CceEEEEEEEcCC-eEEeceeeeeeeecccCCC
Confidence 9999999999999999999998876543 33 35799999999 6899999999864 443332 11110 0
Q ss_pred ccccceEEEEccCCCCCHHHHHHH----HHHHHHHHHHcC--CCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHHHh
Q psy15244 288 QRRYQKVIQIAPAQDMSVSVRDAI----TETSVRLAKSLG--YSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEEIT 360 (1427)
Q Consensus 288 qr~~qk~ie~aPa~~l~~e~~~~l----~~~a~~l~~alg--~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~~t 360 (1427)
......+...+|++.++++..+++ .+.+.+.+.++| |.|++|+||+++++| +|++|||||+++. +......+
T Consensus 224 ~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~ 302 (423)
T TIGR00877 224 GPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLL 302 (423)
T ss_pred CCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC-cEEEEEEccCCCccceeEeccc
Confidence 011123345677766777665443 333445555555 679999999999888 9999999999875 32233347
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeC---CCCCcccccCCCcCCCce
Q psy15244 361 GIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTD---PASIGIRVDSSCPYPGLQ 437 (1427)
Q Consensus 361 GiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~---p~~~gvr~d~~~~~~G~~ 437 (1427)
++|+++.+++++.|. ++++++.. ..+.++..++.+.. +....+....+.. ....++++.... .+..
T Consensus 303 ~~dl~~~~~~~~~g~-l~~~~~~~----~~~~a~~~~~~~~~----yp~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~ 371 (423)
T TIGR00877 303 KSDLLEVCLAAVEGK-LDEVELRF----DNRAAVTVVLASEG----YPGDYRKGDPITGEPLIEAEGVKVFHAG--TKQD 371 (423)
T ss_pred CCCHHHHHHHHHcCC-CCCCCceE----CCCceEEEEEecCC----cCCCCCCCCEeeCCcccccCCCEEEECc--eecc
Confidence 799999999999996 22222221 23444444443222 2112222222211 111233322111 1111
Q ss_pred ecc--cCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 438 ISP--DYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 438 I~~--~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
... ...+.++.|++.|.|+++|.++++++++.+++.|. ++.|..
T Consensus 372 ~~~~~~~~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~~~r~dig~ 419 (423)
T TIGR00877 372 NGKLVTSGGRVLAVTALGKSLEEARERAYEAVEYIKFEGMFYRKDIGF 419 (423)
T ss_pred CCEEEEcCCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEecccch
Confidence 111 22456999999999999999999999999999984 666654
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=382.14 Aligned_cols=367 Identities=20% Similarity=0.340 Sum_probs=290.0
Q ss_pred CCCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
...+||||+|+|++ ++.++++++++|+++++++.+++..+.....+|+.|..+ .+.+.++
T Consensus 552 ~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~---------~~~e~v~ 622 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEP---------LTLEDVL 622 (1066)
T ss_pred CCCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecC---------CCHHHHH
Confidence 35789999999974 356899999999999999999988788888899987643 4589999
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEF 203 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~ 203 (1427)
++++++++|+|+|.+|.... ..++..+++.|++++|++++++..+.||..++++|+++|||+|++. .+.+.+++.++
T Consensus 623 ~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~--~~~s~ee~~~~ 699 (1066)
T PRK05294 623 EIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNG--TATSVEEALEV 699 (1066)
T ss_pred HHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHH
Confidence 99999999999997764322 2678899999999999999999999999999999999999999987 68899999999
Q ss_pred HHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE-eee
Q psy15244 204 CDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH-LYE 282 (1427)
Q Consensus 204 a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~-l~e 282 (1427)
++++|||+||||+.|+||+||.+|++.+||..+++.+... ..+++++||+||+|.+|++|++++|+.+.++. +.+
T Consensus 700 ~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~----s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e 775 (1066)
T PRK05294 700 AEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIME 775 (1066)
T ss_pred HHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh----CCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEE
Confidence 9999999999999999999999999999999999876542 23578999999996669999999986532221 222
Q ss_pred eccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCC
Q psy15244 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGI 362 (1427)
Q Consensus 283 rd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGi 362 (1427)
+.....-+........|+..++++..+++.+.+.+++++||+.|++++||++++ |++|+||+|||+++..++++.++|+
T Consensus 776 ~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~-~~~yViEiNpR~s~t~~~~s~atGi 854 (1066)
T PRK05294 776 HIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKD-DEVYVIEVNPRASRTVPFVSKATGV 854 (1066)
T ss_pred eeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC-CeEEEEEEecCCCccHHHHHHHhCc
Confidence 111111111233445576679999999999999999999999999999999985 5699999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccC
Q psy15244 363 DVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDY 442 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~ 442 (1427)
|+++..+++++|.+|+++++... ..+..+++.+.+++ | -++.. ....+.|..
T Consensus 855 ~~~~~~~~~~lG~~l~~~~~~~~-~~~~~~~vk~p~fs------~-----------------~~~~~----~~~~lg~~m 906 (1066)
T PRK05294 855 PLAKIAARVMLGKKLAELGYTKG-LIPPYVAVKEAVFP------F-----------------NKFPG----VDPLLGPEM 906 (1066)
T ss_pred cHHHHHHHHHcCCChhhcCCCcc-CCCCceEEEeccCC------h-----------------hhccC----CCCccCcee
Confidence 99999999999999876543221 11133444433331 1 11110 011122233
Q ss_pred ccceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 443 DSLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 443 Ds~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
.| .|-+++.|+|+++|+.|+.++.
T Consensus 907 ~s-tge~~~~~~~~~~a~~k~~~~~ 930 (1066)
T PRK05294 907 KS-TGEVMGIDRTFGEAFAKAQLAA 930 (1066)
T ss_pred ee-cCceeecCCCHHHHHHHHHHhc
Confidence 33 6778999999999999877655
|
|
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=325.80 Aligned_cols=372 Identities=22% Similarity=0.360 Sum_probs=305.3
Q ss_pred EEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
+|..++ ..-.+..+++++++.|+++++|.+++.+......+||+.|+.| ...+.+..++++..+|+|+|+
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP---------~~~E~v~~Ii~~E~~Dailp~ 77 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP---------ITKEPVEKIIEKERPDAILPT 77 (400)
T ss_pred eeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeec---------CcHHHHHHHHHhcCcceeecc
Confidence 455544 4445677999999999999999999998888889999999987 568899999999999999999
Q ss_pred CCcc-cccH--HHHH--HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEE
Q psy15244 138 YGFL-SERE--DFAK--AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVI 212 (1427)
Q Consensus 138 ~gfl-sE~~--~~a~--~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvV 212 (1427)
.|-. ..|. .+.+ .|++.|++++|.++++++.+.||.++++++++.|+|+| .. ...+.+++.++++.+|||||
T Consensus 78 ~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~--~~~~~~e~~~~~~~ig~PvI 154 (400)
T COG0458 78 LGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SR--IAHSVEEADEIADEIGYPVI 154 (400)
T ss_pred cCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-cc--ccccHHHHhhhHhhcCCCEE
Confidence 7732 2232 2222 45677999999999999999999999999999999999 32 68899999999999999999
Q ss_pred EeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec-c-ccccc
Q psy15244 213 LKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD-C-SMQRR 290 (1427)
Q Consensus 213 VKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd-~-s~qr~ 290 (1427)
|||+.+.||.|..+++|.+||.+..+.....+ +..++++||+|.|++|++..++.|.+++++.+.... + ...-+
T Consensus 155 VrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvh 230 (400)
T COG0458 155 VKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVH 230 (400)
T ss_pred EecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcccccccc
Confidence 99999999999999999999999888765432 356999999999999999999999999998773222 1 22334
Q ss_pred cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC-CcEEEEeeCCCCCCchhHHHHHhCCCHHHHHH
Q psy15244 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD-DNFYFIEVNPRLQVEHTLSEEITGIDVVQSQI 369 (1427)
Q Consensus 291 ~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d-G~~yfIEINpRl~ge~~vte~~tGiDLv~~~i 369 (1427)
....+..+|++.+++...+.++..+.++++++|..|..+++|.++++ |++||||||||++++..+.+.+||..+.+...
T Consensus 231 tgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaa 310 (400)
T COG0458 231 TGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAA 310 (400)
T ss_pred ccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHH
Confidence 57788899999999999999999999999999999999999999985 69999999999999999999999999999999
Q ss_pred HHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcC-CCceecccCccceEE
Q psy15244 370 KIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPY-PGLQISPDYDSLLAK 448 (1427)
Q Consensus 370 ~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~-~G~~I~~~~Ds~l~k 448 (1427)
.+|.|..++++ +.++...+++ .|.|....+... .| |++...+. ....+...+.| .|-
T Consensus 311 kla~g~~l~Ei---~n~it~~t~a------------~fePsldyvv~k-~p-----r~~f~kf~~~~~~l~~~mks-~ge 368 (400)
T COG0458 311 KLAVGYTLDEI---RNDITGRTPA------------SFEPSLDYVVTK-IP-----RFDFEKFPGADRRLGTQMKS-VGE 368 (400)
T ss_pred HhhcccCchhh---cCcccccccc------------ccCCccceeeee-cC-----CCCcccccccccceeeeeec-cce
Confidence 99999998765 3334334443 477777654321 11 22211111 22345555566 899
Q ss_pred EEEEcCCHHHHHHHHHHHhh
Q psy15244 449 IIVHTATYKSSCEKMRRALE 468 (1427)
Q Consensus 449 vi~~G~~~~eA~~r~~raL~ 468 (1427)
|++.|+|++||++|+.|.|+
T Consensus 369 vm~igr~f~eal~ka~~~l~ 388 (400)
T COG0458 369 VMAIGRTFEEALQKALRSLE 388 (400)
T ss_pred EEEecchHHHHHHHHHHhhc
Confidence 99999999999999999985
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=339.75 Aligned_cols=397 Identities=14% Similarity=0.133 Sum_probs=277.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|.|.-...+++++++.|++++++..+.. ......++..+.+ +..|.+.|+++|+++++|+|+
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~N--pg~~~~a~~~~~~--------~~~d~e~l~~~~~~~~id~Vi 70 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGHEN--PSIKKLSKKYLFY--------DEKDYDLIEDFALKNNVDIVF 70 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCC--hhhhhcccceeec--------CCCCHHHHHHHHHHhCCCEEE
Confidence 567999999998888899999999987776644212 2223345543222 236889999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|+.+... ...++..+++.|++++||+++++++++||..||++|.++|||+|+.+ ..+.+.+++..++.+++||+||||
T Consensus 71 ~~~d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~~~~~~e~~~~~~~~~~PvVVKP 148 (435)
T PRK06395 71 VGPDPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NACFSEKDAARDYITSMKDVAVKP 148 (435)
T ss_pred ECCChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ceeCChHHHHHHHHhhCCCEEEEe
Confidence 9976411 12456777889999999999999999999999999999999998543 145567888888888899999999
Q ss_pred cCCCCCcCeEEecCH-HHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEe-eeec----cc--c
Q psy15244 216 AFGGGGRGMRMVANK-DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL-YERD----CS--M 287 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~-eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l-~erd----~s--~ 287 (1427)
.+++||+||++|.+. +++.+++..+.+.. . .++.++|||||+ |.|++++++.|+.. +..+ ..+| +. .
T Consensus 149 ~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~-G~E~Svd~~~dg~~-~~~l~~~~d~~r~~~~d~ 223 (435)
T PRK06395 149 IGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMT-GEEFSLQAFSDGKH-LSFMPIVQDYKRAYEGDH 223 (435)
T ss_pred CCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecC-CceEEEEEEEcCCe-EEEecccceeeecccCCC
Confidence 999999999999643 34455554443311 1 146799999999 78999999998753 3333 2211 11 1
Q ss_pred ccccceEEEEc----cCCCCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEEEEcCCCcEEEEeeCCCCCC-chhHHH
Q psy15244 288 QRRYQKVIQIA----PAQDMSVSVRDAITETSVRLAKSLG-----YSNAGTVEFLLDKDDNFYFIEVNPRLQV-EHTLSE 357 (1427)
Q Consensus 288 qr~~qk~ie~a----Pa~~l~~e~~~~l~~~a~~l~~alg-----~~G~~~VEflvd~dG~~yfIEINpRl~g-e~~vte 357 (1427)
..+...+...+ |.|.++++..+++.+.+.+++++|+ |+|+.++||+++++| +|+||+|+|++. |+.+..
T Consensus 224 gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il 302 (435)
T PRK06395 224 GPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVL 302 (435)
T ss_pred CCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhh
Confidence 22233344454 4556899999999999999999999 678888999999777 999999999994 455554
Q ss_pred HHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccc-cCCCcC-CC
Q psy15244 358 EITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRV-DSSCPY-PG 435 (1427)
Q Consensus 358 ~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~-d~~~~~-~G 435 (1427)
...+.|+++..+.++.| +|.. .+.+. .. .++.+-+.++. .. ..|..|.|.........++.+ ..+... .+
T Consensus 303 ~~l~~d~~~~~~~~~~g-~l~~-~~~~~---~~-~~~~~~l~~~g-Yp-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 374 (435)
T PRK06395 303 YLLKSDFVETLHQIYSG-NLNG-SIKFE---RK-ATVLKYIVPPG-YG-ENPSPGRIKIDKTIFDSNSDVYYASVSGTLN 374 (435)
T ss_pred hhcccCHHHHHHHHhcC-CCCC-Cceec---CC-CEEEEEEecCC-CC-CCCCCCceeccccccCCCCEEEEeeccccCC
Confidence 55789999999999999 4432 22221 12 23333333332 11 234556554221101123222 111111 11
Q ss_pred ceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 436 LQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 436 ~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
. +.. ..+.++.|++.|.|+++|+++++++++.++ .|. ++.|.+
T Consensus 375 ~-~~s-~ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~~R~Dig~ 419 (435)
T PRK06395 375 D-VKT-SGSRSLAIIAKGDSIPEASEKVDSDLNAVH-GSYYVRRDIGD 419 (435)
T ss_pred C-eEE-CCCcEEEEEEEcCCHHHHHHHHHHHHhccC-CCcEeecchhh
Confidence 1 222 245599999999999999999999999998 553 566654
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=335.55 Aligned_cols=393 Identities=18% Similarity=0.144 Sum_probs=273.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHc--CCEEEEEecCCCccCcccc----ccceEEEcCCCCCcccCCCCHHHHHHHHHhcCC
Q psy15244 58 EKILIANRSEVAIRVARACNEM--GIKSVGIYSEQDKFSAHRT----KVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNV 131 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~el--Gi~~vav~s~~d~~s~~~~----~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~v 131 (1427)
.||||+|.|.-...++.++++. |++++++..+.+ ..... .+|+.+.+ +..|.+.|+++|+++++
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~N--pg~~~~~~~~~~~~~~~--------~~~d~~~l~~~a~~~~i 70 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLN--PGINSVVKATGGEYFIG--------NINSPEEVKKVAKEVNP 70 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCC--hhheeecccccCceEec--------CCCCHHHHHHHHHHhCC
Confidence 3899999998888899999998 999888855332 11111 22433443 24678999999999999
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCC-CccccCCCHHHHHHHHHhcCCc
Q psy15244 132 DAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIP-GTTEPVTDVDKVKEFCDEVEFP 210 (1427)
Q Consensus 132 DaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~-~~~~~v~s~eea~~~a~~iGyP 210 (1427)
|+|+||.+.. -...+++.+++.|++++||+++++++++||..+|++|+++|||+|+ +. .+++.+++.++++.. +|
T Consensus 71 d~Vi~g~E~~-l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~--~~~~~~ea~~~~~~~-~P 146 (486)
T PRK05784 71 DLVVIGPEEP-LFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYK--VFYDVEEAAKFIEYG-GS 146 (486)
T ss_pred CEEEECCchH-HHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccce--EeCCHHHHHHHHhhc-CC
Confidence 9999986421 1125778899999999999999999999999999999999999974 54 678999999988665 69
Q ss_pred EEEeecCCCCCcCeEEecCHHH-----HHHHHHHHHHHHH---HccC--CCcEEEEeeccCCceEEEEEEecccccEEEe
Q psy15244 211 VILKAAFGGGGRGMRMVANKDA-----IEENFKRAQSEAL---ASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHL 280 (1427)
Q Consensus 211 vVVKP~~GgGGrGV~iV~s~ee-----L~~a~~~a~~ea~---~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l 280 (1427)
+||||..++||+||++|++.++ +.+++..+.++.. ..|+ +..++|||||+ |.|++|+++.|++ +++.+
T Consensus 147 vVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~-G~E~SV~al~dG~-~~~~l 224 (486)
T PRK05784 147 VAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD-GVEYTLQVLTDGE-TVIPL 224 (486)
T ss_pred EEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC-CeEEEEEEEECCC-eEEEe
Confidence 9999999999999999999873 4566644433321 3454 46899999999 8899999999864 33322
Q ss_pred -eeecccc------ccccceEEEEcc----CCCCCHHHHHHHHHHHHHHHHHcC------CCCeEEEEEEEc-CCCcEEE
Q psy15244 281 -YERDCSM------QRRYQKVIQIAP----AQDMSVSVRDAITETSVRLAKSLG------YSNAGTVEFLLD-KDDNFYF 342 (1427)
Q Consensus 281 -~erd~s~------qr~~qk~ie~aP----a~~l~~e~~~~l~~~a~~l~~alg------~~G~~~VEflvd-~dG~~yf 342 (1427)
..+|... ..+...+...+| .|.++++..+++.+.+...+++++ |+|+.|+||+++ ++| ||+
T Consensus 225 ~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~v 303 (486)
T PRK05784 225 PLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PTV 303 (486)
T ss_pred eeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cEE
Confidence 2222111 112234555677 666788877777777776665553 459999999999 777 999
Q ss_pred EeeCCCCCCc-hhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCcc-CCCCCceeeeeC-
Q psy15244 343 IEVNPRLQVE-HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNF-QPSTGRLDVFTD- 419 (1427)
Q Consensus 343 IEINpRl~ge-~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f-~P~~G~i~~~~~- 419 (1427)
||+|+|+++. .+.+...++.|+++..++++.|+ |.++.+.+. ...++ |.+.+......- .|..|.......
T Consensus 304 IE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~g~-l~~~~~~~~----~~~~~-~vv~as~gYp~~~~~~~g~~i~~~~~ 377 (486)
T PRK05784 304 IEYYSRFGDPEASNIIPRIESDFGELFELAATGK-LSKAKIKFN----EEPSV-VKAIAPLGYPLSRDLASGRRIVVDLD 377 (486)
T ss_pred EEEecccCCchHHHHHHhccCCHHHHHHHHHcCC-CCCCCeeec----CCceE-EEEECCCCCCCcccCCCCCEEECCcc
Confidence 9999999964 33333346669999999999997 332222221 13333 455554432211 145564332211
Q ss_pred ---CCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhcc-EEccc
Q psy15244 420 ---PASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEET-QVSGV 475 (1427)
Q Consensus 420 ---p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~-~I~Gv 475 (1427)
..+..|... +....+..+.. ..+.+..|++.|+|.++|+++++++++.+ .+.|.
T Consensus 378 ~~~~~~~~v~~a-g~~~~~~~~~t-~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~ 435 (486)
T PRK05784 378 KIKEEGCLVFFG-SVELEGGQLIT-KGSRALEIVAIGKDFEEAYEKLERCISYVSSDTKL 435 (486)
T ss_pred ccccCCCEEEEC-CceeeCCEEEE-cCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCC
Confidence 111122222 21112222222 24457789999999999999999999998 77663
|
|
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=329.63 Aligned_cols=343 Identities=15% Similarity=0.179 Sum_probs=251.1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccC
Q psy15244 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPV 194 (1427)
Q Consensus 115 ~yldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v 194 (1427)
++.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++. .+
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~--~~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYK--EV 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEE--EE
Confidence 4678999999999999999999886421 23678899999999999999999999999999999999999999986 68
Q ss_pred CCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc
Q psy15244 195 TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 195 ~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
.+.+++.++++++|||+||||..++||+||++|++.+|+.++++.+... ..++.++||+||+ |+|+++.++.+++
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~----~~~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGD----EEEGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc----CCCCeEEEEEccc-CceEEEEEEeeCC
Confidence 8999999999999999999999999999999999999999999876421 1145899999999 6999999999865
Q ss_pred ccEEEe--eeecc------ccccccceEEEEccCCCCCHHHHHHH-HHHHHHHHHHc---CC--CCeEEEEEEEcCCCcE
Q psy15244 275 GDVVHL--YERDC------SMQRRYQKVIQIAPAQDMSVSVRDAI-TETSVRLAKSL---GY--SNAGTVEFLLDKDDNF 340 (1427)
Q Consensus 275 G~vv~l--~erd~------s~qr~~qk~ie~aPa~~l~~e~~~~l-~~~a~~l~~al---g~--~G~~~VEflvd~dG~~ 340 (1427)
. .+.+ ..++. ....+...+...+|++.++++..+++ .+.+.+++++| |+ .|+.++||+++++| +
T Consensus 164 ~-~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~ 241 (379)
T PRK13790 164 L-AVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-P 241 (379)
T ss_pred E-EEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-e
Confidence 3 2221 11110 00111134556678877888776555 55666666655 54 69999999999877 9
Q ss_pred EEEeeCCCCCCc-hhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCC-ceeeee
Q psy15244 341 YFIEVNPRLQVE-HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTG-RLDVFT 418 (1427)
Q Consensus 341 yfIEINpRl~ge-~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G-~i~~~~ 418 (1427)
|+||+|+|+++- ..++...+|+|+++.+++++.|.+++ +.+.+....|..+..+-|..+ +..| .|....
T Consensus 242 ~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~---~~~~~~~~~~v~~~s~gyp~~------~~~~~~i~~~~ 312 (379)
T PRK13790 242 KVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTE---FKWKNESIVGVMLASKGYPDA------YEKGHKVSGFD 312 (379)
T ss_pred EEEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCc---eeEcCCCEEEEEEccCCCCCC------CCCCCeeeecC
Confidence 999999999853 44555568999999999999998653 333332333333322223222 2222 233221
Q ss_pred CCCCCcccccCCCc-CCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 419 DPASIGIRVDSSCP-YPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 419 ~p~~~gvr~d~~~~-~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
... .+... +.. ..|..++. .+.+..|++.|.|.++|.++++++++.+.+.|. ++.|.+
T Consensus 313 -~~~-~~~~~-~~~~~~~~~~~~--ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~R~dig~ 373 (379)
T PRK13790 313 -LNE-NYFVS-GLKKQGDTFVTS--GGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDIAN 373 (379)
T ss_pred -CCC-eEEEC-CccccCCeEEEC--CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhh
Confidence 111 11111 111 12222221 356888999999999999999999999999984 777766
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=317.39 Aligned_cols=293 Identities=18% Similarity=0.243 Sum_probs=237.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcC--CEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMG--IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elG--i~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
|.||||+|.|... .+++++++.| +++++++.++. ++....+|+.+.++...+ . ..++.++++++++++|+|
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~--~~~~~~~d~~~~~p~~~~--~--~~~~~l~~~~~~~~id~i 73 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISEL--APALYFADKFYVVPKVTD--P--NYIDRLLDICKKEKIDLL 73 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCc--chhhHhccCcEecCCCCC--h--hHHHHHHHHHHHhCCCEE
Confidence 5799999987555 8999999995 99999877754 566778998888762211 1 237899999999999999
Q ss_pred EeCCCcccc-cHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHH--HHHhcCCcE
Q psy15244 135 HPGYGFLSE-REDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKE--FCDEVEFPV 211 (1427)
Q Consensus 135 ~pg~gflsE-~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~--~a~~iGyPv 211 (1427)
+|+.+...+ .+..++.++..|+.+++|++++++.+.||..++++++++|+|+|++. .+.+.+++.+ +.+.++||+
T Consensus 74 i~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~P~ 151 (326)
T PRK12767 74 IPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSY--LPESLEDFKAALAKGELQFPL 151 (326)
T ss_pred EECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEE--cccCHHHHHhhhhcccCCCCE
Confidence 998763221 12345667778999999999999999999999999999999999986 6788888887 567899999
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccccccc
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY 291 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~ 291 (1427)
|+||..|+||+|++++++.+|+.++++.. .++++|+||+ |+++++.++.+.+|+++.+..+.....+..
T Consensus 152 viKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~-G~e~~v~~~~~~~G~~~~~~~~~~~~~~~g 220 (326)
T PRK12767 152 FVKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIE-GQEYTVDVLCDLNGEVISIVPRKRIEVRAG 220 (326)
T ss_pred EEEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccC-CceEEEEEEEcCCCCEEEEEEeeeeeecCC
Confidence 99999999999999999999999887642 4899999997 899999999987788887655443211111
Q ss_pred ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 292 qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
....... .. .+++.+.+.++++++|+.|.+++||++++ |++|+||+|||+++..++. ..+|+|+.++.++.
T Consensus 221 ~~~~~~~----~~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~~~~-~~~G~n~~~~~~~~ 291 (326)
T PRK12767 221 ETSKGVT----VK---DPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGYPLS-YMAGANEPDWIIRN 291 (326)
T ss_pred ceeEEEE----cC---CHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcchhh-HhhCCCHHHHHHHH
Confidence 1111111 11 26788999999999999999999999997 6799999999999987654 46999999999999
Q ss_pred HcCCCCc
Q psy15244 372 AQGKSLT 378 (1427)
Q Consensus 372 A~G~~l~ 378 (1427)
++|++++
T Consensus 292 ~~g~~~~ 298 (326)
T PRK12767 292 LLGGENE 298 (326)
T ss_pred HcCCCCC
Confidence 9999864
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-30 Score=292.51 Aligned_cols=365 Identities=19% Similarity=0.286 Sum_probs=288.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+++|-|+|+|..++++..++++||+++++++.++| ++..+.||..+.. .|.|.+++.+++.+ +|.|
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~--~PA~~va~~~i~~--------~~dD~~al~ela~~--~DVi-- 66 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDAD--APAAQVADRVIVA--------AYDDPEALRELAAK--CDVI-- 66 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC--Cchhhcccceeec--------CCCCHHHHHHHHhh--CCEE--
Confidence 46899999999999999999999999999977777 7788889888763 47889999999998 7777
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
+|+|..-+.+..+.+++. .+ +-|++++++...||...|++++++|+|+|||. .+.+.+++.++++++|+|+|+|.+
T Consensus 67 T~EfE~V~~~aL~~l~~~-~~-v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~--~v~~~~el~~~~~~~g~p~VlKtr 142 (375)
T COG0026 67 TYEFENVPAEALEKLAAS-VK-VFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADLGFPAVLKTR 142 (375)
T ss_pred EEeeccCCHHHHHHHHhh-cC-cCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCceEEEec
Confidence 577744445666666666 34 45999999999999999999999999999997 899999999999999999999999
Q ss_pred CCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 217 FGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 217 ~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
.|| .|||.+++++.+++......... ....++|+||+..+|+||-+.++.+|++.. |.--.++++......
T Consensus 143 ~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~-yP~~eN~h~~gIl~~ 214 (375)
T COG0026 143 RGGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAF-YPVAENVHRNGILRT 214 (375)
T ss_pred cccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEE-ecccceeeecCEEEE
Confidence 777 89999999999998875543211 234499999999999999999988888764 444457888888888
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
.++|+ .++++..++..++|.+++++|+|.|++.|||++++||++++.|+.||+..+.++|...+.++.++.++|..+|.
T Consensus 215 siaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~gl 293 (375)
T COG0026 215 SIAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGL 293 (375)
T ss_pred EEecC-cCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCC
Confidence 99999 79999999999999999999999999999999999999999999999999988998999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCC-CcCCCceecccCccceEEEEEEcC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSS-CPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~-~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
||++. .....++..-+.-.+.. +. ..-.....| +..+.+.+. .+++|-+ +|+|.+.+.
T Consensus 294 PLg~~-------~~~~p~vMvNlLG~~~~----~~-~~~~~l~~p-~~~lH~YGK~e~R~gRK--------mGHvn~~~~ 352 (375)
T COG0026 294 PLGST-------TLLSPSVMVNLLGDDVP----PD-DVKAVLALP-GAHLHWYGKAEARPGRK--------MGHVNVLGS 352 (375)
T ss_pred CCCCc-------cccCceEEEEecCCCCc----hh-hhHHHHhCC-CCEEEEecCccCCCCCe--------eeeEEeecC
Confidence 98742 22333444444432211 00 000111111 113333311 1233333 899999999
Q ss_pred CHHHHHHHHHHHhhc
Q psy15244 455 TYKSSCEKMRRALEE 469 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e 469 (1427)
|.+++.++....-..
T Consensus 353 ~~~~~~~~~~~l~~~ 367 (375)
T COG0026 353 DSDELEQLAALLPAK 367 (375)
T ss_pred CHHHHHHHHHhhhhh
Confidence 977776655544433
|
|
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=292.04 Aligned_cols=400 Identities=19% Similarity=0.230 Sum_probs=286.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||||+|.|.---.|++++.+.+....+...+.+. .. +.+.+++. .+.+ .+.+.|+++|++.++|.++.|
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~-G~----a~~~~~~~---~~~~--~~~~~lv~fA~~~~idl~vVG 70 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNP-GT----ALEAYLVN---IEID--TDHEALVAFAKEKNVDLVVVG 70 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCC-cc----chhhhhcc---Cccc--cCHHHHHHHHHHcCCCEEEEC
Confidence 38999999966666899998877544433333221 11 11334432 1111 568999999999999999999
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
.+.--. ..+++.+++.||+.+||+.+++++-++|..+|++|+++|||++.+. .+++.+++++++++.|.|+||||..
T Consensus 71 PE~pL~-~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~--~f~~~e~a~ayi~~~g~piVVKadG 147 (428)
T COG0151 71 PEAPLV-AGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYE--VFTDPEEAKAYIDEKGAPIVVKADG 147 (428)
T ss_pred CcHHHh-hhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCccccc--ccCCHHHHHHHHHHcCCCEEEeccc
Confidence 752111 2678999999999999999999999999999999999999999886 7889999999999999999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC--CcEEEEeeccCCceEEEEEEecccccEEEe-eeecc------ccc
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGK--DDMLVEKYIDRPRHIEVQILGDKYGDVVHL-YERDC------SMQ 288 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~--~~vlVEeyIeggreieVqvl~Dg~G~vv~l-~erd~------s~q 288 (1427)
-.+|+||.++.+.+|..++++.+... ..||+ ..++||||++ |.|+|++++.|++ +++.+ ..+|. ...
T Consensus 148 LaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~-GeE~S~~a~~DG~-~v~p~p~aQDhKra~dgD~G 223 (428)
T COG0151 148 LAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLD-GEEFSLQAFVDGK-TVIPMPTAQDHKRAYDGDTG 223 (428)
T ss_pred ccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEeccc-ceEEEEEEEEcCC-eEEECccccccccccCCCCC
Confidence 99999999999999999998887764 34553 4599999999 9999999999975 45443 22221 122
Q ss_pred cccceEEEEccCCCCCHHHHHHHH-HHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCC-CchhHHHHHhC
Q psy15244 289 RRYQKVIQIAPAQDMSVSVRDAIT-ETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQ-VEHTLSEEITG 361 (1427)
Q Consensus 289 r~~qk~ie~aPa~~l~~e~~~~l~-~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~-ge~~vte~~tG 361 (1427)
.+...+..++|+|.++++..+++. +.....++++ .|+|+....|+++++| |++||.|.|++ .|...+-...-
T Consensus 224 PNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~ 302 (428)
T COG0151 224 PNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLE 302 (428)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhcc
Confidence 344668889999999999777666 4444444443 4779999999999999 99999999999 66767667788
Q ss_pred CCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCc--ccccCCCcCCCcee
Q psy15244 362 IDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIG--IRVDSSCPYPGLQI 438 (1427)
Q Consensus 362 iDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~g--vr~d~~~~~~G~~I 438 (1427)
-||++..+.++.|. |.+..+.+.+ .+.++..-+-++. .. -.|..|. |+........+ +.+.+.....|..+
T Consensus 303 sdl~~~~~a~~~g~-L~~~~~~~~~---~~a~v~vvlA~~G-YP-~~~~kG~~I~~~~~~~~~~~~vf~Agv~~~~~~~l 376 (428)
T COG0151 303 SDLVELLLAAVDGK-LDEVEILFWD---KGAAVGVVLAAEG-YP-GDPEKGDVITGDEEAEEEGAKVFHAGVKLDDGGQL 376 (428)
T ss_pred ccHHHHHHHHHhCC-ccccchhhcc---CCceEEEEEecCC-CC-CCCCCCCEEecChhhcccCcEEEEeeEeccCCceE
Confidence 89999999999996 2222212111 1233322222222 10 1255664 33322111112 22221111222222
Q ss_pred cccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHHH
Q psy15244 439 SPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPFL 482 (1427)
Q Consensus 439 ~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~l 482 (1427)
-. ..+..-.|+..|+|.++|.++++++++.+..+|. +.+|.+-
T Consensus 377 vt-~GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~~yRkDIG~~ 421 (428)
T COG0151 377 VT-SGGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLFYRKDIGSR 421 (428)
T ss_pred Ee-cCCeEEEEEecCCCHHHHHHHHHHHHhhcCCCCceeecccchh
Confidence 22 2455666999999999999999999999999885 6666553
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=277.99 Aligned_cols=378 Identities=16% Similarity=0.268 Sum_probs=294.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
-+|||.+|.||.+..+.-+|+++|.++++++...+ ++..+.|+.+|.++ .+|.++|..+.++.++|+|+|
T Consensus 12 a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~--APAmqVAhrs~Vi~--------MlD~~al~avv~rekPd~IVp 81 (394)
T COG0027 12 ATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSYVID--------MLDGDALRAVVEREKPDYIVP 81 (394)
T ss_pred CeEEEEecCCccchHHHHHHHhcCCEEEEecCcCC--Chhhhhhhheeeee--------ccCHHHHHHHHHhhCCCeeee
Confidence 56899999999999999999999999999998888 56667788888875 589999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHH-hCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAAL-KADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~-~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
-.+..+ .+....+|+.|+.++ |+..+.+++.|+...|+++. ++|+|+.+|. ...+.+++.+.++++||||++||
T Consensus 82 EiEAI~--td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~--fa~s~~e~~~a~~~iGfPcvvKP 156 (394)
T COG0027 82 EIEAIA--TDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYR--FADSLEELRAAVEKIGFPCVVKP 156 (394)
T ss_pred hhhhhh--HHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCcccc--ccccHHHHHHHHHHcCCCeeccc
Confidence 765332 344557889999865 99999999999999999874 6999999987 68999999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccc----cccc
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM----QRRY 291 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~----qr~~ 291 (1427)
..+++|+|..+|+++++++.+++.+.+.++ -+++.+++|+||+..-|+++-.++.-+|+-. + |.. |.+.
T Consensus 157 vMSSSGkGqsvv~~~e~ve~AW~~A~~g~R--~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~-F----c~PIGHrq~dg 229 (394)
T COG0027 157 VMSSSGKGQSVVRSPEDVEKAWEYAQQGGR--GGSGRVIVEEFVKFDFEITLLTVRAVDGTGS-F----CAPIGHRQEDG 229 (394)
T ss_pred ccccCCCCceeecCHHHHHHHHHHHHhcCC--CCCCcEEEEEEecceEEEEEEEEEEecCCCC-c----CCCcccccCCC
Confidence 999999999999999999999999886544 2468999999999767777666654344321 1 333 2223
Q ss_pred ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 292 qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
...-.+-|. .+++...++....|.++.++||-.|.+.||+++..| +.||-|+.||+....-+|-..-+++-++.++|.
T Consensus 230 dY~ESWQP~-~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gD-eV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RA 307 (394)
T COG0027 230 DYRESWQPQ-EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRA 307 (394)
T ss_pred ChhcccCcc-ccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCC-EEEEeecCCCCCCCceEEEEeccchHHHHHHHH
Confidence 334455677 699999999999999999999999999999999875 599999999999876666666689999999999
Q ss_pred HcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 372 AQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 372 A~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
.+|.|++.+... . +...+.|-+-....+| +-.|.-..+..| ...+|+.+. .. .+-...+|-.++
T Consensus 308 iLGLPi~~i~~~--~-P~AS~vI~~~~~~~~~-----~f~~l~~AL~~p-~t~vRlFGK-P~------~~~~RRmGVALA 371 (394)
T COG0027 308 ILGLPIPEIRQI--S-PAASAVILAQETSQAP-----TFDGLAEALGVP-DTQVRLFGK-PE------ADGGRRLGVALA 371 (394)
T ss_pred HhCCCccceeee--c-ccccceeeccccccCC-----chhhHHHHhcCC-CceEEEecC-Cc------ccCCceeeEEEe
Confidence 999998743211 1 1122333333333222 112322223332 335676621 11 011234898999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcc
Q psy15244 452 HTATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~G 474 (1427)
++++-++|++|++++.+.+.|.+
T Consensus 372 ~a~~Ve~Are~A~~aa~~i~v~~ 394 (394)
T COG0027 372 TAESVEEARERARKAASAIEVKG 394 (394)
T ss_pred cCccHHHHHHHHHHHHhheecCC
Confidence 99999999999999999888754
|
|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=281.04 Aligned_cols=292 Identities=23% Similarity=0.306 Sum_probs=234.1
Q ss_pred EEcCC-HHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCc
Q psy15244 62 IANRS-EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGF 140 (1427)
Q Consensus 62 IagrG-eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gf 140 (1427)
..|+| ..+..+++++++. -...++.++.+..+.....||+++.+|. ..++| ++.++++|+++++|+++|++.-
T Consensus 3 wfn~~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~eP~---~~~~y--v~~~l~~C~~~~Idv~~P~~~~ 76 (329)
T PF15632_consen 3 WFNRGFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLEPA---DGEEY--VDWCLDFCKEHGIDVFVPGRNR 76 (329)
T ss_pred EecCCCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeecCC---CHHHH--HHHHHHHHHHhCCeEEEcCccH
Confidence 34544 3456688888885 3344445566666888999999999873 44567 8899999999999999999753
Q ss_pred ccccHHHHHHHHHCCCceeC-CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc---EEEeec
Q psy15244 141 LSEREDFAKAVIGAGLEFIG-PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP---VILKAA 216 (1427)
Q Consensus 141 lsE~~~~a~~~e~~Gi~fiG-ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP---vVVKP~ 216 (1427)
.. .....+.+++.|+.+.- ++.++++++.||..+.+.+++.|||+|+++ .+++.++++++++++++| +.|||+
T Consensus 77 ~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~--~v~t~~el~~a~~~l~~~~~~~CvKP~ 153 (329)
T PF15632_consen 77 EL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYW--RVRTADELKAAYEELRFPGQPLCVKPA 153 (329)
T ss_pred HH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEE--EeCCHHHHHHHHHhcCCCCceEEEecc
Confidence 21 33456688899999877 889999999999999999999999999997 799999999999998877 999999
Q ss_pred CCCCCcCeEEec-CHHHHHHHHH---------HHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccc
Q psy15244 217 FGGGGRGMRMVA-NKDAIEENFK---------RAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS 286 (1427)
Q Consensus 217 ~GgGGrGV~iV~-s~eeL~~a~~---------~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s 286 (1427)
.|.||+|.++++ +.+++...++ ...+.-..+-.-.+++|++|++ |.|+||+++++. |+++....|.-.
T Consensus 154 ~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~-G~EySVD~l~~~-G~viaaV~R~K~ 231 (329)
T PF15632_consen 154 VGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLP-GPEYSVDCLADE-GRVIAAVPRRKL 231 (329)
T ss_pred cCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCC-CCeEEEEEEecC-CEEEEEEEEEec
Confidence 999999999998 6666655444 1111111111247899999999 999999999996 888876555322
Q ss_pred cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHH
Q psy15244 287 MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQ 366 (1427)
Q Consensus 287 ~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~ 366 (1427)
.+.|.+. ...++.+.|.++++++|+.|.++|+|+.|.+|++++||||||++|+..++-. +|+|+..
T Consensus 232 --G~~q~l~-----------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~s~~-aGvNlp~ 297 (329)
T PF15632_consen 232 --GRRQVLE-----------NDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGYSCA-AGVNLPY 297 (329)
T ss_pred --CceeEEE-----------ECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhhHhh-cCCChHH
Confidence 1222222 1267899999999999999999999999999999999999999999877764 8999999
Q ss_pred HHHHHHcCCCCc
Q psy15244 367 SQIKIAQGKSLT 378 (1427)
Q Consensus 367 ~~i~iA~G~~l~ 378 (1427)
+.+..++|++.+
T Consensus 298 la~~~~lG~~~~ 309 (329)
T PF15632_consen 298 LAVKLALGEPIP 309 (329)
T ss_pred HHHHHHcCCCCC
Confidence 999999999875
|
|
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=294.35 Aligned_cols=247 Identities=20% Similarity=0.236 Sum_probs=199.9
Q ss_pred HHHHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH
Q psy15244 120 PEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK 199 (1427)
Q Consensus 120 ~~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee 199 (1427)
.+++++.++.+.... .-|++|+..++.+|+..||+++||+++++..+.||..+|++++++|||+|++......+.++
T Consensus 94 ~~~~~~~~~~~~~~~---~~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee 170 (493)
T PRK06524 94 PETLEFIKRRGPGGK---ACFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE 170 (493)
T ss_pred HHHHHHHHhhCCCCc---eEEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence 566777777654221 23899999999999999999999999999999999999999999999999997333567777
Q ss_pred HHHHHHh--cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccE
Q psy15244 200 VKEFCDE--VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 200 a~~~a~~--iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~v 277 (1427)
+.+.++. +|||+||||+.|++|+|+++|++.+||..+++.+ +++..++||+||. ++|++|+++.+.+|++
T Consensus 171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~-------~~~~~viVEe~I~-GrEitVev~vd~dG~V 242 (493)
T PRK06524 171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGI-------VGQPEIKVMKRIR-NVEVCIEACVTRHGTV 242 (493)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHh-------cCCCCEEEEeccC-cEEEEEEEEEeCCCCE
Confidence 7776765 9999999999999999999999999999877543 3457899999998 8999999999888877
Q ss_pred EEee------eeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEEEcC-CCcEEEEeeCC
Q psy15244 278 VHLY------ERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL---GYSNAGTVEFLLDK-DDNFYFIEVNP 347 (1427)
Q Consensus 278 v~l~------erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al---g~~G~~~VEflvd~-dG~~yfIEINp 347 (1427)
+... .+++...+.+....+.+|+ .++++..+++.+.|.++.++| ||.|.++|||+++. +|++||+||||
T Consensus 243 v~~~~~e~vg~~Ei~~yr~G~~~~~i~PA-~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINP 321 (493)
T PRK06524 243 IGPAMTSLVGYPELTPYRGGWCGNDIWPG-ALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 321 (493)
T ss_pred EeccccccccceEEEEccCCeEEEEEccC-CCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeC
Confidence 5421 1112212222222457788 699999999999999999998 89999999999995 58899999999
Q ss_pred CCCCchhHHHHHh--CCCHHH--HHHHHHcCCCCc
Q psy15244 348 RLQVEHTLSEEIT--GIDVVQ--SQIKIAQGKSLT 378 (1427)
Q Consensus 348 Rl~ge~~vte~~t--GiDLv~--~~i~iA~G~~l~ 378 (1427)
|++|+++++++++ |.|+.+ .+++..+|.|..
T Consensus 322 R~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 322 RLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred CcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 9999999988855 355554 555566888764
|
|
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=277.64 Aligned_cols=273 Identities=18% Similarity=0.252 Sum_probs=210.6
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHH
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAK 127 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~ 127 (1427)
++||.|+-+|. .+..+++++++.|++++.++.+.. .++.-..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~-----------------------------~~~~~l~ 53 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK-----------------------------ELVAKLL 53 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch-----------------------------hHHHHhh
Confidence 34777765443 345689999999999988753211 0111122
Q ss_pred hcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHh
Q psy15244 128 NNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDE 206 (1427)
Q Consensus 128 ~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~ 206 (1427)
+.++|.++++ +|...|+..++..|+..||+++|++++++.++.||..+|++++++|||+|++. .+.+. ....+.
T Consensus 54 ~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~--~~~~~---~~~~~~ 128 (296)
T PRK14569 54 ELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK--FLTDK---LVAEDE 128 (296)
T ss_pred ccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeE--EEchh---hhhHhh
Confidence 3479999987 46677888999999999999999999999999999999999999999999975 23321 123567
Q ss_pred cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeee--c
Q psy15244 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER--D 284 (1427)
Q Consensus 207 iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~er--d 284 (1427)
++||+||||+.|++|+|+.+|++.+||..+++.+.. .+.++||+||+ |+|++|.++.++....+.+... .
T Consensus 129 ~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~-G~E~tv~vl~~~~~~~~~i~~~~~~ 200 (296)
T PRK14569 129 ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVT-GKEITVAIVNDEVYSSVWIEPQNEF 200 (296)
T ss_pred cCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccc-cEEEEEEEECCcCcceEEEecCCCc
Confidence 899999999999999999999999999999877532 25799999999 7999999997643222222111 1
Q ss_pred ccc-ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHH
Q psy15244 285 CSM-QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEI 359 (1427)
Q Consensus 285 ~s~-qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~ 359 (1427)
+.. ....++.....|+ .++++..+++.+.|.+++++||++|.+++||+++++|++||+|||||++-. .+.....
T Consensus 201 ~~~~~k~~~~~~~~~P~-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~ 279 (296)
T PRK14569 201 YDYESKYSGKSIYHSPS-GLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAA 279 (296)
T ss_pred CChhhccCCCcEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHH
Confidence 111 1122445566787 588889999999999999999999999999999988999999999999843 4455556
Q ss_pred hCCCHHHHHHHHH
Q psy15244 360 TGIDVVQSQIKIA 372 (1427)
Q Consensus 360 tGiDLv~~~i~iA 372 (1427)
.|+|+.+...++.
T Consensus 280 ~G~~~~~li~~ii 292 (296)
T PRK14569 280 EGVDFDSFVKRII 292 (296)
T ss_pred cCCCHHHHHHHHH
Confidence 8998888766554
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=297.57 Aligned_cols=280 Identities=18% Similarity=0.190 Sum_probs=213.5
Q ss_pred CCCEEEEEcCC-HHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIANRS-EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIagrG-eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
..++|||+|.+ .+++.++|++++.|++++++++.++..+.+++.+|+.+.++.+....+.| ++.|+++++++++|+|
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAY--IQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHH--HHHHHHHHHHcCCCEE
Confidence 36799999955 58999999999999999999998877777788999999886443333445 7899999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEE
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVIL 213 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVV 213 (1427)
+|+.+.....+...+.++ .++.+++|++++++.+.||..++++++++|||+|++. .+.+.+++.++..+. +||+|+
T Consensus 81 IP~~e~~~~~a~~~~~l~-~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~--~v~~~~~l~~~~~~~~~~P~vl 157 (389)
T PRK06849 81 IPTCEEVFYLSHAKEELS-AYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTY--LITDPEAIRNFMFKTPHTPYVL 157 (389)
T ss_pred EECChHHHhHHhhhhhhc-CCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHhhcCCCCcEEE
Confidence 999874311112222332 3567889999999999999999999999999999987 688999998887776 999999
Q ss_pred eecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccce
Q psy15244 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293 (1427)
Q Consensus 214 KP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk 293 (1427)
||+.|+||+|+.++.+.+++.... ...+.++++||||+ |.++++..+.. +|+++...............
T Consensus 158 KP~~~~~~~~v~~~~~~~~l~~~~---------~~~~~~~ivQe~I~-G~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~ 226 (389)
T PRK06849 158 KPIYSRFVRRVDLLPKEAALKELP---------ISKDNPWVMQEFIQ-GKEYCSYSIVR-SGELRAHSCYKPEYCAGSGA 226 (389)
T ss_pred EeCcccCCCeEEEecCHHHhcccc---------cCCCCCeEEEEEec-CCeEEEEEEEE-CCEEEEEEEeeccccCCCCc
Confidence 999999999999998855433211 11235799999999 66777777764 36666542211100001111
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHH
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSE 357 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte 357 (1427)
.+...|. ..++|.+.+.++++++||.|.+++||+++++|++|+||||||++++.+++.
T Consensus 227 ~~~~~~~------~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 227 QIAFQPI------NHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred eeEeEEC------CcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEcC
Confidence 1112222 135789999999999999999999999998899999999999998866553
|
|
| >KOG0369|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=288.60 Aligned_cols=575 Identities=20% Similarity=0.240 Sum_probs=300.6
Q ss_pred heeeccceeEeecccccccchhhhhccccccccccccc-cccccccccc--cCCCeEEeecCcccCCCCCCCcccCHHHH
Q psy15244 607 TTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMM-GAGEFVNSVR--KLKHILLTDTTFRDAHQSLLATRVRTYDL 683 (1427)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~-~~~~~~~~~~--~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~ 683 (1427)
+.||++|++|||||||||+||||+|||+|++||+++++ .+.+|+.... +... --+|+.||==|.++| -|+ +++
T Consensus 552 k~VRn~~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGG-ATFDVamRFLhEcPW-eRL--~~l 627 (1176)
T KOG0369|consen 552 KAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGG-ATFDVAMRFLHECPW-ERL--REL 627 (1176)
T ss_pred HHHhcCCCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCC-chhhHHHHHHhcChH-HHH--HHH
Confidence 46889999999999999999999999999999999988 5666654332 2222 357999999999988 333 334
Q ss_pred HHHHHHHH--hhcCCccEEeccCCCchhhhhhcccc------Ch---HHHHHHHHHhCCCCceeeeecccc------ccc
Q psy15244 684 KKVSPFVA--NRFNNLYSLEMWGGAVSHTCLKFLKE------CP---WERLAELRELIPNIPFQMILRGNS------LVG 746 (1427)
Q Consensus 684 l~ia~~l~--~~~~G~~~iE~~ggatfd~~~rfl~e------~p---~erl~~lr~~~p~~~~qml~Rg~n------~vg 746 (1427)
.++.+.+- -++-|...+--. .---.+-+.|+.- |- ++.| ..+||..+.|-.-|.. .+-
T Consensus 628 RkliPNIPFQmLLRGANavgYs-syPDNviykFce~Ak~nGmDiFRVFDsL----N~lpnl~lGmeAagkAGGVVEAai~ 702 (1176)
T KOG0369|consen 628 RKLIPNIPFQMLLRGANAVGYS-SYPDNVIYKFCEQAKKNGMDIFRVFDSL----NYLPNLLLGMEAAGKAGGVVEAAIC 702 (1176)
T ss_pred HHhCCCCcHHHHhccccccccc-CCChhHHHHHHHHHHhcCcceeeehhhh----hhhhhhhhhHhhhhccCCeEEEEEe
Confidence 44333211 001122221110 0001122333311 00 1111 1123333333211110 111
Q ss_pred c---------cCCCcchHHHHHHHHHhcCCCEEEEeccCChH--HHHHHHHHHHHHhcCCCcEEEEEEE-eeccCCCCCC
Q psy15244 747 Y---------SNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--PNLVKGMDAVQQVTGGSTIVEATIC-YAGDLTNPNK 814 (1427)
Q Consensus 747 y---------~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--~~~~~~i~~a~~~G~~~~~v~~~i~-~t~d~~~p~~ 814 (1427)
| +.|.-+.--..+++..+.|..+..|=|-..-+ +..+..|.+.++.-- . ..|. .|.| .
T Consensus 703 YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~P---d--lPiHvHtHD-----t 772 (1176)
T KOG0369|consen 703 YTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFP---D--LPIHVHTHD-----T 772 (1176)
T ss_pred eccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCC---C--CceEEeccC-----C
Confidence 2 12222222334556667777777666544422 344444555554321 0 0111 1111 1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEE--EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH--HHHHHhcC
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVL--CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT--LACVKAGA 890 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i--~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~--laAi~AGa 890 (1427)
+-.-+..+. ++..+|||.+ .+--|.|+..--.+-.++..+.-. |+ |.|+-+-+. +.|..++.
T Consensus 773 ---sGagVAsMl-aca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt----~~------Dt~l~~~~v~eysaYWe~~ 838 (1176)
T KOG0369|consen 773 ---SGAGVASML-ACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGT----PL------DTGLNLEHVREYSAYWEQM 838 (1176)
T ss_pred ---ccHHHHHHH-HHHHcCCceeeeecccccccccCCchhhhhhhccCC----cc------cCCCchHHHHHHHHHHHHH
Confidence 111223333 4456788864 444577766655666666665532 21 123322221 23444444
Q ss_pred CEEEeccccC-CCCCCCCcHHHHHHHHHhC--CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHH
Q psy15244 891 DIVDVAADSM-SGICSQPAMGTIVSCLENT--DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSY 967 (1427)
Q Consensus 891 d~VD~av~Gm-G~~tgn~~lE~vv~~L~~~--g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~ 967 (1427)
+.+=..+..- --..||+.. . ..+. |.-|.+.. +.-+--.-+-
T Consensus 839 R~LYapFe~tttmksgn~dV---Y--~hEIPGGQyTNL~F------------------------------QA~slGLG~q 883 (1176)
T KOG0369|consen 839 RLLYAPFECTTTMKSGNSDV---Y--QHEIPGGQYTNLQF------------------------------QAFSLGLGEQ 883 (1176)
T ss_pred hhhhchhhhcccccCCCcch---h--hccCCCcceeeeee------------------------------ehhhccchhh
Confidence 4322221110 012344432 1 1111 11122222 1222223455
Q ss_pred HHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHH
Q psy15244 968 WRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIF 1047 (1427)
Q Consensus 968 ~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~ 1047 (1427)
|..+.+.|..-+ .+.| +++.---+..-...|.+-.-+.+|.-+++.+ -.++|.+|-.| +=--|-.
T Consensus 884 ~~evKkaYrEAN--~lLG---DiiKVTPsSKvVGDLAQFMVqN~Lt~~~~~~----rA~~LsFP~SV-----vdf~qG~- 948 (1176)
T KOG0369|consen 884 FAEVKKAYREAN--LLLG---DIIKVTPSSKVVGDLAQFMVQNKLTRDDVER----RAEELSFPKSV-----VDFFQGL- 948 (1176)
T ss_pred HHHHHHHHHHHH--HHhh---CeeeeccchhhHHHHHHHHHhcCCCHHHHHH----HhhhcCCcHHH-----HHHHhcc-
Confidence 666766775432 1222 2222111222223566666677776555443 33456555433 1111111
Q ss_pred HHHcCCChhhhhhccccccccHhHHH-Hhcc---ccCCCCCCCCH---hHHHHHhCCCCCcccCCCCCCCccccccccCC
Q psy15244 1048 MTQEKLSYRDVMENADKIIFPKSVTE-FFQG---SIGEPYQGFPK---KLQEKVLDSLKDHALERKAEFDPIMACDYRED 1120 (1427)
Q Consensus 1048 ~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~g---~~g~~~~~~~~---~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~ 1120 (1427)
-|..|. -||+-... .++| .-|+|-...|+ +-.++-| ..|-+ .+
T Consensus 949 ---iGqP~g---------GFPEPlRs~VLk~~~r~~gRPG~~l~p~Dldai~keL------~e~~~------------~~ 998 (1176)
T KOG0369|consen 949 ---IGQPYG---------GFPEPLRSKVLKGKPRLTGRPGAELPPLDLDAIRKEL------QERHG------------DV 998 (1176)
T ss_pred ---cCCCCC---------CCCchhHHHHhcCCCccCCCCCCcCCccCHHHHHHHH------HHhcC------------CC
Confidence 122221 24443322 2233 22343333322 1112212 12222 25
Q ss_pred Cccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1121 EPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1121 ~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
.+.| +++.|||.|+++|++++++||++++||||.||++.|++||++ +..|.
T Consensus 999 s~~Dv~sy~myP~Vf~~f~~fr~~yG~ld~lpTr~FL~~pe~~EE~~-Veie~--------------------------- 1050 (1176)
T KOG0369|consen 999 SECDVASYAMYPRVFEDFQKFRETYGPLDKLPTRLFLTGPEIAEEFE-VEIEQ--------------------------- 1050 (1176)
T ss_pred cHHHhhhhhhccHHHHHHHHHHHhcCCccccchhhhccCCCcCceEE-EEecc---------------------------
Confidence 6777 555699999999999999999999999999999999999997 66555
Q ss_pred cCCCCCCCccccc-CCCCCC-cEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchh
Q psy15244 1200 FGPVDKLPTRIFL-NGPNIG-EEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVF 1277 (1427)
Q Consensus 1200 ~~~~~~l~~~~f~-~g~~~g-~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~ 1277 (1427)
|..-.+-.-..- ..-+.| -+++++++ |+...|.+..++ . ..+.+.
T Consensus 1051 -GKTL~ik~lAvg~~~~~~GqReVfFeLN-GqlR~i~v~Dk~------a-------------------------~ke~v~ 1097 (1176)
T KOG0369|consen 1051 -GKTLIIKLLAVGDLLKKTGQREVFFELN-GQLRSIRVADKE------A-------------------------AKEIVT 1097 (1176)
T ss_pred -CcEEEEEeeecccccccCCceEEEEEec-CceeeEEeechh------h-------------------------hhhhcc
Confidence 211000000000 001223 36778887 887777633322 0 125567
Q ss_pred hhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCC
Q psy15244 1278 AFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTA 1357 (1427)
Q Consensus 1278 ~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~ 1357 (1427)
.|+++.+..-.+.++|.|...++.+++|+.+ .+ ||+..| .++ -...
T Consensus 1098 ~PkA~~~~~g~igAPMpG~vieikvk~G~kV-----------~K-----------gqpl~V-LSA-----------MKME 1143 (1176)
T KOG0369|consen 1098 RPKADPGVKGHIGAPMPGTVIEIKVKEGAKV-----------KK-----------GQPLAV-LSA-----------MKME 1143 (1176)
T ss_pred cccCCCCCcccccCCCCCceEEEEEecCcee-----------cC-----------CCceEe-eec-----------ceee
Confidence 7888999999999999999999999999987 33 444333 010 0134
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.-|.||+.|+|.++.|..|++|+.||.+++||
T Consensus 1144 mVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1144 MVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred eeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 56889999999999999999999999999987
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=283.43 Aligned_cols=297 Identities=21% Similarity=0.256 Sum_probs=219.2
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccce-EEEcCCCCCcccCCCCHHHHHHHH
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQ-AFLVGKGMPPVAAYLNIPEIICIA 126 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe-~~~i~~~~~~~~~yldi~~Ii~ia 126 (1427)
++||.|+-+|. .|..+++++++.||+++.++-+.+. .+. .-+. ...+..+.....++. +....
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g--~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~ 75 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDG--RWY-LIDADNMELADDDNDKEDLS----LLILP 75 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCC--CEe-eccchhhhcccccccccccc----hhccc
Confidence 55788775543 3556899999999999999876641 000 0000 000000000000110 11111
Q ss_pred Hhc--CCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH----
Q psy15244 127 KNN--NVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK---- 199 (1427)
Q Consensus 127 ~~~--~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee---- 199 (1427)
+.. ++|+|+|. +|...|+..+...|+..|++|+|+++.+...+.||..+|++++++|||+|++. .+.+.++
T Consensus 76 ~~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~ 153 (333)
T PRK01966 76 SGGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYV--VLTRGDWEEAS 153 (333)
T ss_pred cccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEeccccchhh
Confidence 122 69999999 78888999999999999999999999999999999999999999999999986 3443332
Q ss_pred HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 200 VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 200 a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
+..+.+.++||+||||..|+||.||.+|++.+||.++++.+.+. ++.++||+||+ |+|++|.++++ ++.+..
T Consensus 154 ~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~-G~E~~v~vl~~-~~~~~~ 225 (333)
T PRK01966 154 LAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIK-GREIECAVLGN-DPKASV 225 (333)
T ss_pred HHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcC-CEEEEEEEECC-CCeEcc
Confidence 35566789999999999999999999999999999999876542 47899999999 79999999987 344433
Q ss_pred eeeeccc-----ccccc--ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 280 LYERDCS-----MQRRY--QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 280 l~erd~s-----~qr~~--qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
+.+..++ ....+ .......|+ .++++..+++.+.+.+++++||++|.+++||+++++|++||+|||||++-.
T Consensus 226 ~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t 304 (333)
T PRK01966 226 PGEIVKPDDFYDYEAKYLDGSAELIIPA-DLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFT 304 (333)
T ss_pred cEEEecCCceEcHHHccCCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 3332221 11111 123456687 699999999999999999999999999999999988999999999999854
Q ss_pred ----hhHHHHHhCCCHHHHHHHH
Q psy15244 353 ----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 353 ----~~vte~~tGiDLv~~~i~i 371 (1427)
.+.....+|+|+.+..-++
T Consensus 305 ~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 305 PISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred cccHHHHHHHHcCCCHHHHHHHH
Confidence 2334456888887766554
|
|
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=275.88 Aligned_cols=277 Identities=22% Similarity=0.322 Sum_probs=216.9
Q ss_pred CCCCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHH
Q psy15244 55 KTMEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICI 125 (1427)
Q Consensus 55 ~~~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~i 125 (1427)
+|+++|.|+-+|. .+..++++++++|++++.++.+.+ +++.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~------------------------------~~~~ 51 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED------------------------------IAAQ 51 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc------------------------------hHHH
Confidence 4556788776332 356799999999999998854422 2233
Q ss_pred HHhcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 126 AKNNNVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 126 a~~~~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
.+..++|+|++.+ |...|+..++..|+..|++++|+++.++..+.||..++++++++|||+|++. .+.+.+++..++
T Consensus 52 ~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~ 129 (304)
T PRK01372 52 LKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWI--VLTREEDLLAAI 129 (304)
T ss_pred hccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcchHHHHH
Confidence 3456799999974 4566888889999999999999999999999999999999999999999987 678888888889
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD 284 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd 284 (1427)
+++|||+||||..|+||+|+.++++.+|+.++++.+.. + +..+++|+||+ |+|++|.++.+....++.+....
T Consensus 130 ~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~~~~~ 202 (304)
T PRK01372 130 DKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIK-GRELTVAVLGGKALPVIEIVPAG 202 (304)
T ss_pred hhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccC-CEEEEEEEECCCccceEEEEecC
Confidence 99999999999999999999999999999998876532 2 46899999999 89999999877433333221110
Q ss_pred --ccccc--ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHH
Q psy15244 285 --CSMQR--RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLS 356 (1427)
Q Consensus 285 --~s~qr--~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vt 356 (1427)
+.... .........|+ .++++..+++.+.+.++++++|+.|.+++||+++++|++||||+|||++-. .+..
T Consensus 203 ~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~~~ 281 (304)
T PRK01372 203 EFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVPMA 281 (304)
T ss_pred CEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHHHHH
Confidence 01111 11223455666 588999999999999999999999999999999998999999999998743 2223
Q ss_pred HHHhCCCHHHHHHHH
Q psy15244 357 EEITGIDVVQSQIKI 371 (1427)
Q Consensus 357 e~~tGiDLv~~~i~i 371 (1427)
....|+|+.+....+
T Consensus 282 ~~~~g~~~~~~~~~i 296 (304)
T PRK01372 282 ARAAGISFSELVDRI 296 (304)
T ss_pred HHHcCCCHHHHHHHH
Confidence 334688877766554
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=283.08 Aligned_cols=176 Identities=24% Similarity=0.372 Sum_probs=146.3
Q ss_pred CCccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhh
Q psy15244 1120 DEPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRD 1198 (1427)
Q Consensus 1120 ~~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1198 (1427)
....| ++.+|||||+.+|.+.+++||++|.|||++||.||+.|||++ +..|+
T Consensus 972 ~~d~d~~sy~lyPkvf~dy~~~~~~yGd~S~L~t~~ff~gm~~gEe~~-v~ie~-------------------------- 1024 (1149)
T COG1038 972 VSDQDVASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEEIE-VEIEK-------------------------- 1024 (1149)
T ss_pred chhHHHHHHHhcchhHHHHHHHHHhcCCccccCcchhhccCCCCceEE-EEecC--------------------------
Confidence 44556 456699999999999999999999999999999999999997 55555
Q ss_pred ccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhh
Q psy15244 1199 EFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFA 1278 (1427)
Q Consensus 1199 ~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~ 1278 (1427)
|+++.|.+ ..|. +++..++|+|||+||||.|.+.++++ ....+....
T Consensus 1025 -------------------GktLii~l-----~aig------e~d~~G~r~v~felNGq~R~i~v~Dr---s~~~~~~~r 1071 (1149)
T COG1038 1025 -------------------GKTLIIKL-----QAIG------EPDEKGMRTVYFELNGQPREIKVKDR---SVGSSVVAR 1071 (1149)
T ss_pred -------------------CcEEEEEe-----cccC------CCCcCCcEEEEEEeCCceeeeeeccc---ccccccccc
Confidence 89999955 4555 67788999999999999999999998 344457778
Q ss_pred hhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCC
Q psy15244 1279 FLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAG 1358 (1427)
Q Consensus 1279 ~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~ 1358 (1427)
++...+...++.++|.|...++.++.|+.+ .. |+..-+-. .-....
T Consensus 1072 ~KAd~~Np~higApmpG~Vv~v~V~~G~~V-----------k~-----------Gd~l~~ie------------AMKMEt 1117 (1149)
T COG1038 1072 RKADPGNPGHIGAPMPGVVVEVKVKKGDKV-----------KK-----------GDVLAVIE------------AMKMET 1117 (1149)
T ss_pred cccCCCCccccCCCCCCceEEEEEccCCee-----------cC-----------CCeeeehh------------hhhhce
Confidence 889999999999999999999999999987 22 33322100 001456
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.|.||..|+|.+++|+.||+|..||.|++++
T Consensus 1118 ~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1118 TISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred eeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 7999999999999999999999999999876
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=272.61 Aligned_cols=275 Identities=21% Similarity=0.320 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHH-HHHH-HHhcCCCEEEeC-CCccccc
Q psy15244 68 VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPE-IICI-AKNNNVDAIHPG-YGFLSER 144 (1427)
Q Consensus 68 ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~-Ii~i-a~~~~vDaI~pg-~gflsE~ 144 (1427)
.+..++++++++|++++.++...+... . +.+... +... ....++|+|+|. .|...|+
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~~----------~----------~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~ 78 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGSW----------T----------YKDLPQLILELGALLEGIDVVFPVLHGRYGED 78 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCccc----------c----------ccchHHHHhhccccCCCCCEEEEecCCCCCCC
Confidence 366799999999999999987765311 0 011111 2111 122579999997 4566788
Q ss_pred HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC-CHH---HH--HHHHHhcCCcEEEeecCC
Q psy15244 145 EDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT-DVD---KV--KEFCDEVEFPVILKAAFG 218 (1427)
Q Consensus 145 ~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~-s~e---ea--~~~a~~iGyPvVVKP~~G 218 (1427)
..++..|+..|++++|+++.++..+.||..++++++++|||+|++. .+. +.+ ++ ..+.+.++||+||||..|
T Consensus 79 ~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~ 156 (315)
T TIGR01205 79 GTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYI--VLTQNRASADELECEQVAEPLGFPVIVKPARE 156 (315)
T ss_pred cHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEecccccchhhhHHHHHHhcCCCEEEEeCCC
Confidence 8899999999999999999999999999999999999999999986 343 332 22 234568899999999999
Q ss_pred CCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEE-Eeeeecc---ccccc-c-c
Q psy15244 219 GGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVV-HLYERDC---SMQRR-Y-Q 292 (1427)
Q Consensus 219 gGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv-~l~erd~---s~qr~-~-q 292 (1427)
+||+||.+|++.+||.++++.+... +..+++|+||+ |+|+++.+++++++..+ .+..+.+ ..... + .
T Consensus 157 ~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~-G~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (315)
T TIGR01205 157 GSSVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDG 229 (315)
T ss_pred CCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCC-CEEEEEEEECCCCccceEEecCCCCCeeCcccccCCC
Confidence 9999999999999999998876432 46899999999 99999999986543222 2211111 11111 1 1
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhCCCHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITGIDVVQSQ 368 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tGiDLv~~~ 368 (1427)
......|+ .++++..++|.+.+.+++++||+.|.+++||+++++|++||||||||++.. .+..-...|+|..+..
T Consensus 230 ~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~ 308 (315)
T TIGR01205 230 STEYVIPA-PLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLV 308 (315)
T ss_pred CeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHH
Confidence 13344576 589999999999999999999999999999999988899999999998754 2233345788888777
Q ss_pred HHHH
Q psy15244 369 IKIA 372 (1427)
Q Consensus 369 i~iA 372 (1427)
..+.
T Consensus 309 ~~ii 312 (315)
T TIGR01205 309 ERIL 312 (315)
T ss_pred HHHH
Confidence 6653
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=270.23 Aligned_cols=304 Identities=15% Similarity=0.175 Sum_probs=213.6
Q ss_pred CEEEEEcCCHH---------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCC-CH---HHH--
Q psy15244 58 EKILIANRSEV---------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYL-NI---PEI-- 122 (1427)
Q Consensus 58 kkVLIagrGei---------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yl-di---~~I-- 122 (1427)
.||.|+-+|.. |..+++++++.||+++.++.+.|..-......+..+..+..... ..+. ++ ..+
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSE-DLFLEEFQKANGVSE 80 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccc-ccccccccccccccc
Confidence 47777665542 45689999999999998886654210000011111111000000 0000 00 000
Q ss_pred HHHHHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcccc----CCCH
Q psy15244 123 ICIAKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEP----VTDV 197 (1427)
Q Consensus 123 i~ia~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~----v~s~ 197 (1427)
.......++|.++++ +|...|+..+...|+..|++++|+++.++..+.||..+|++++++|||+|++.... ..+.
T Consensus 81 ~~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~ 160 (347)
T PRK14572 81 PADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSP 160 (347)
T ss_pred cccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccCh
Confidence 011123468999988 67778999999999999999999999999999999999999999999999986211 1234
Q ss_pred HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc-c-
Q psy15244 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY-G- 275 (1427)
Q Consensus 198 eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~-G- 275 (1427)
+++.+..++++||+||||+.|++|+||.+|++.+||..+++.+.+. +..++||+||+ |+|++|.++.+.. |
T Consensus 161 ~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~-G~E~sv~vi~~~~~g~ 233 (347)
T PRK14572 161 RKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLS-GTEVSCGVLERYRGGK 233 (347)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCcc-cEEEEEEEEeCccCCC
Confidence 4555556789999999999999999999999999999999876532 56899999999 7999999997522 2
Q ss_pred -cEEEeeeecc-------cccccc--ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEee
Q psy15244 276 -DVVHLYERDC-------SMQRRY--QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEV 345 (1427)
Q Consensus 276 -~vv~l~erd~-------s~qr~~--qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEI 345 (1427)
+.+.+..... ....++ ....+..|+ .+++++.+++.+.|.+++++||+.|.+++||+++ +|++|++||
T Consensus 234 ~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~~~~vlEi 311 (347)
T PRK14572 234 RNPIALPATEIVPGGEFFDFESKYKQGGSEEITPA-RISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV-DGEPHILET 311 (347)
T ss_pred CCceecccEEEecCCCccCHHHccCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE-CCcEEEEee
Confidence 2322221111 111111 234456788 5899999999999999999999999999999997 577999999
Q ss_pred CCCCCCc----hhHHHHHhCCCHHHHHHHH
Q psy15244 346 NPRLQVE----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 346 NpRl~ge----~~vte~~tGiDLv~~~i~i 371 (1427)
|++++-. .+..-...|+++.+..-++
T Consensus 312 Nt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 312 NTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred eCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999843 2333345788877665544
|
|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=270.30 Aligned_cols=294 Identities=20% Similarity=0.220 Sum_probs=212.1
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCc-cCccccc--------cceEEEcCCCCCcccCCCC
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDK-FSAHRTK--------VDQAFLVGKGMPPVAAYLN 118 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~-~s~~~~~--------aDe~~~i~~~~~~~~~yld 118 (1427)
++||.|+-+|. .|..+++++.+.||+++.++-+.+. ....... ....+..+ . ..
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~----~~--- 74 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSP-D----RK--- 74 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeecc-c----cc---
Confidence 45777775553 3556899999999999999865541 1000000 00011100 0 00
Q ss_pred HHHHHHH----HHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcccc
Q psy15244 119 IPEIICI----AKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEP 193 (1427)
Q Consensus 119 i~~Ii~i----a~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~ 193 (1427)
...+... .+..++|.++|. +|...|+..+...++..|++++|+++.+...+.||..+|++++++|||+|++. .
T Consensus 75 ~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~--~ 152 (343)
T PRK14568 75 VHGLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFW--T 152 (343)
T ss_pred cccccccCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--E
Confidence 0000000 123569999998 78888999999999999999999999999999999999999999999999986 4
Q ss_pred CCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecc
Q psy15244 194 VTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK 273 (1427)
Q Consensus 194 v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg 273 (1427)
+.+.++.. .+.++||+||||+.|++|+|+.+|++.+||.++++.+.+. ++.++||+||+ |+|+++.+++++
T Consensus 153 ~~~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~-G~E~sv~vl~~~ 223 (343)
T PRK14568 153 VTADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVV-GSEVGCAVLGNG 223 (343)
T ss_pred EECCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcC-CEEEEEEEEcCC
Confidence 44444322 3578999999999999999999999999999999876432 46899999999 899999999875
Q ss_pred cccEEE-eeeecc--ccccccc---------eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEE
Q psy15244 274 YGDVVH-LYERDC--SMQRRYQ---------KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFY 341 (1427)
Q Consensus 274 ~G~vv~-l~erd~--s~qr~~q---------k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~y 341 (1427)
.+..+. +.+... ...+.++ ......|+ .++++..+++.+.+.+++++||+.|.+++||+++++|++|
T Consensus 224 ~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~ 302 (343)
T PRK14568 224 ADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPA-DISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVV 302 (343)
T ss_pred CCcceecceEEecCCCccchhhhhccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEE
Confidence 432221 111000 1111111 22345687 6999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCc----hhHHHHHhCCCHHHHHHH
Q psy15244 342 FIEVNPRLQVE----HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 342 fIEINpRl~ge----~~vte~~tGiDLv~~~i~ 370 (1427)
|+|||++++-. .+..-.+.|+++.+..-+
T Consensus 303 llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 303 LNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 99999999854 122234567776555443
|
|
| >KOG2368|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=242.55 Aligned_cols=264 Identities=20% Similarity=0.239 Sum_probs=226.6
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccc--cChHHHHHHHHHhCCCC
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPWERLAELRELIPNI 733 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~erl~~lr~~~p~~ 733 (1427)
.++++|+++.-|||-|..- .-++|+-|+++...|.+ +|+..+|..+ | ++-.+.. -|--|-++.+++ .|
T Consensus 16 ~~~vkiVEVGpRDGLQnEk-~~vpt~vKveLI~~Lse--~Gl~~vEtTS---F-VSpKWVPQl~D~~ev~k~i~~-~~-- 85 (316)
T KOG2368|consen 16 PKRVKIVEVGPRDGLQNEK-NIVPTEVKVELIDRLSE--CGLQVVETTS---F-VSPKWVPQLADHNEVMKGIRK-FP-- 85 (316)
T ss_pred cceeEEEEecCcccccccC-ccCCchHHHHHHHHHHH--cCCceeeeec---c-cCccccccccchHHHHHhhhc-CC--
Confidence 5789999999999999765 66999999999999999 8999999864 1 1111110 122333443332 12
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEE
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v 799 (1427)
.+.|.-..+|... .+.|.++|...+.||.+.|+. ..++...++|++++. .+
T Consensus 86 ----------Gv~yPVLtPNlkG--f~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni---~v 150 (316)
T KOG2368|consen 86 ----------GVSYPVLTPNLKG--FEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNI---RV 150 (316)
T ss_pred ----------CccccccCcchhh--HHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCC---cc
Confidence 3456666788777 889999999999999999863 345667778888888 88
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHH
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGV 879 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~ 879 (1427)
.++++.. ++||+.+...++.+.++++++.++|+-.|.|.||.|+.+|..+.++..++-+.+|.-.+.+|||||+|.|+
T Consensus 151 RGYVScv--vGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQAL 228 (316)
T KOG2368|consen 151 RGYVSCV--VGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQAL 228 (316)
T ss_pred ceEEEEE--ecCCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHH
Confidence 9988887 68999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHhcCCEEEeccccCCCC------CCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q psy15244 880 ATTLACVKAGADIVDVAADSMSGI------CSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~GmG~~------tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~ 946 (1427)
||.|.+++.|+++||.++.|+||| +||.++|+++++|+++|++||+||.+|.+.++++.+.+|+.-.
T Consensus 229 aNiL~slqmGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~ 301 (316)
T KOG2368|consen 229 ANILVSLQMGIRVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTW 301 (316)
T ss_pred HHHHHHHHhcceehhhhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999 6999999999999999999999999999999999999998743
|
|
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=267.56 Aligned_cols=303 Identities=17% Similarity=0.171 Sum_probs=213.9
Q ss_pred CCEEEEEcCCHH---------HHHHHHHH-HHcCCEEEEEecCCCccCccccccceEEEcCCC-CCcccCCC----CHHH
Q psy15244 57 MEKILIANRSEV---------AIRVARAC-NEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG-MPPVAAYL----NIPE 121 (1427)
Q Consensus 57 ~kkVLIagrGei---------a~riiraa-~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~-~~~~~~yl----di~~ 121 (1427)
++||.|+-+|.. |..+++++ .+.+++++.|+-+.+. ..+. ..+........ ......+. ....
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCT-GIWY-LLDSVPDPPKLIKRDVLPIVSLIPGCGI 79 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCC-CeEE-ecCccccccccccccccccccccccccc
Confidence 557887765543 44689998 6789999988765441 0000 01000000000 00000000 0000
Q ss_pred HHHHHHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccc----cCCC
Q psy15244 122 IICIAKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTE----PVTD 196 (1427)
Q Consensus 122 Ii~ia~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~----~v~s 196 (1427)
+.. .+..++|.|+|. .|...|+..+...|+.+|||++|++..+..++.||..+|++++++|||+||+... ...+
T Consensus 80 ~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 80 FVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred ccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccc
Confidence 110 122468999998 6777799999999999999999999999999999999999999999999997521 1124
Q ss_pred HHHHHH-HHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 197 VDKVKE-FCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 197 ~eea~~-~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
.+++.+ +.+.+|||+||||+.+++|.||.+|++.+||..+++.+... ++.++||+||+ |+|++|.+++++..
T Consensus 159 ~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~-GrEi~v~Vlg~~~~ 231 (364)
T PRK14570 159 KEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIE-AREIECSVIGNEQI 231 (364)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcC-CEEEEEEEECCCCc
Confidence 455544 34679999999999999999999999999999999877532 46799999999 89999999987654
Q ss_pred cEEEeeeecc------cccc-----ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEE
Q psy15244 276 DVVHLYERDC------SMQR-----RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFI 343 (1427)
Q Consensus 276 ~vv~l~erd~------s~qr-----~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfI 343 (1427)
.+....+... ++.. ..+......|+ .++++..++|.+.|.++.++||++|.+.+||++++ +|++||+
T Consensus 232 ~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa-~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvl 310 (364)
T PRK14570 232 KIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPA-HLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLN 310 (364)
T ss_pred eEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEE
Confidence 4444333211 1111 11223445687 59999999999999999999999999999999996 5899999
Q ss_pred eeCCCCCCc----hhHHHHHhCCCHHHHHHH
Q psy15244 344 EVNPRLQVE----HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 344 EINpRl~ge----~~vte~~tGiDLv~~~i~ 370 (1427)
|||++++-. .+..-...|+++.+..-+
T Consensus 311 EiNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 341 (364)
T PRK14570 311 EINTIPGFTDISMFAKMCEHDGLQYKSLVDN 341 (364)
T ss_pred EeeCCCCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 999999843 233334478876654433
|
|
| >PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-28 Score=235.82 Aligned_cols=107 Identities=40% Similarity=0.775 Sum_probs=101.6
Q ss_pred EEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc
Q psy15244 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 395 ~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G 474 (1427)
|||||||||.++|.|++|+|+.+++|+++|||+|+ +++.|+.|+++||||+||||+||.||++|++||.+||+++.|+|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt-~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDT-GVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEE-SESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEe-cCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC
Confidence 79999999999999999999999999999999995 48999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHhhcCCcccccCCcccccccc
Q psy15244 475 VTTNLPFLLNVFDDKKFLSGEALETNFID 503 (1427)
Q Consensus 475 v~tni~~l~~~l~~~~f~~g~~~~t~~i~ 503 (1427)
++||++||++||.||+|++| +++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g-~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSG-TYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT--SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccC-CCeeeccC
Confidence 99999999999999999999 99999986
|
It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A .... |
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=252.67 Aligned_cols=254 Identities=19% Similarity=0.265 Sum_probs=193.3
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC-CCcccccHHH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG-YGFLSEREDF 147 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg-~gflsE~~~~ 147 (1427)
+..++++++++|++++.++...+- ... +.+..++|.|++. .|...|+..+
T Consensus 21 ~~~i~~al~~~g~~~~~i~~~~~~--------------------------~~~---~~~~~~~D~v~~~~~g~~ge~~~~ 71 (299)
T PRK14571 21 GERVKKALEKLGYEVTVFDVDEDF--------------------------LKK---VDQLKSFDVVFNVLHGTFGEDGTL 71 (299)
T ss_pred HHHHHHHHHHcCCeEEEEccCchH--------------------------HHH---hhhccCCCEEEEeCCCCCCCccHH
Confidence 556899999999999988654320 001 1122458999987 4555688889
Q ss_pred HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEe
Q psy15244 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMV 227 (1427)
Q Consensus 148 a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV 227 (1427)
+..|+..|++++|+++.++..+.||..++++++ +|||+|++. .+.+.. ....++||+||||..|+||+||.+|
T Consensus 72 ~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~--~~~~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v 144 (299)
T PRK14571 72 QAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFV--EIKEFM----KTSPLGYPCVVKPRREGSSIGVFIC 144 (299)
T ss_pred HHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEE--EEechh----hhhhcCCCEEEecCCCCCcCCEEEE
Confidence 999999999999999999999999999999998 589999986 343322 2457899999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccccc-EEEeeeecc-----ccccc--cceEEEEcc
Q psy15244 228 ANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD-VVHLYERDC-----SMQRR--YQKVIQIAP 299 (1427)
Q Consensus 228 ~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~-vv~l~erd~-----s~qr~--~qk~ie~aP 299 (1427)
++.+||.++++.+... .+.++||+||+ |+|++|.+++++.+. ++.+.+..- ..... ........|
T Consensus 145 ~~~~el~~~~~~~~~~------~~~vlVEeyI~-G~E~sv~vl~~~~~~~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p 217 (299)
T PRK14571 145 ESDEEFQHALKEDLPR------YGSVIVQEYIP-GREMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILP 217 (299)
T ss_pred CCHHHHHHHHHHHHhh------CCcEEEEcccc-ceEEEEEEEcCCCCeeeeceEEEecCCCccccccccCCCCeeEEeC
Confidence 9999999988765421 35799999999 899999999976443 333332210 01101 112233457
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhCCCHHHH
Q psy15244 300 AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITGIDVVQS 367 (1427)
Q Consensus 300 a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tGiDLv~~ 367 (1427)
+ .++++..++|.+.+.++++++|+.|.+++||+++ +|++||+|||++++-. .+..-...|+|+.+.
T Consensus 218 ~-~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~l 287 (299)
T PRK14571 218 A-PLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEEL 287 (299)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHH
Confidence 7 5899999999999999999999999999999997 4679999999999854 222223478877663
|
|
| >smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-26 Score=227.47 Aligned_cols=107 Identities=40% Similarity=0.799 Sum_probs=104.0
Q ss_pred EEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc
Q psy15244 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 395 ~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G 474 (1427)
|||||||||.++|.|++|+|+.+++|+++|+|+|+ .++.|+.|+++||||+||||+||+||++|++||.+||+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt-~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDS-GVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEc-cCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC
Confidence 69999999999999999999999999999999995 47899999999999999999999999999999999999999999
Q ss_pred cccCHHHHHhhcCCcccccCCcccccccc
Q psy15244 475 VTTNLPFLLNVFDDKKFLSGEALETNFID 503 (1427)
Q Consensus 475 v~tni~~l~~~l~~~~f~~g~~~~t~~i~ 503 (1427)
++||++||++||.||+|++| +++|+||+
T Consensus 80 v~TN~~~l~~ll~~~~f~~g-~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAG-DVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcC-cccccccC
Confidence 99999999999999999999 99999985
|
Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain. |
| >KOG0370|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-26 Score=277.54 Aligned_cols=430 Identities=21% Similarity=0.329 Sum_probs=340.2
Q ss_pred CCCEEEEEcCCHHHH-----------HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 56 TMEKILIANRSEVAI-----------RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 56 ~~kkVLIagrGeia~-----------riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
+.+|+||+|.|...+ ..++|++|-|+.++++..+-........+||..|.++ ...+.+-.
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp---------vT~~~vt~ 446 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP---------VTPEYVTK 446 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee---------cCHHHHHH
Confidence 458999999875544 4799999999999999888777777778999999997 55677888
Q ss_pred HHHhcCCCEEEeCCCcccc-cH--HHHH--HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSE-RE--DFAK--AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK 199 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE-~~--~~a~--~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee 199 (1427)
..+...+|+|..++|.-.- |. ++-+ .+++.|....|-+.+++....|+..+-+.+.+.+.++.++. .+++.++
T Consensus 447 vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~--a~~sie~ 524 (1435)
T KOG0370|consen 447 VIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSE--AVSTIEE 524 (1435)
T ss_pred HHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchh--hHhHHHH
Confidence 8888999999988773211 11 2222 56778899999999999999999999999999999999975 7899999
Q ss_pred HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 200 VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 200 a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
+.++++++|||+|+.+++.-||-|--.+++.+||.+....+.+. ...++||+-+.|.+|+|.+++.|..+|++.
T Consensus 525 al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciT 598 (1435)
T KOG0370|consen 525 ALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCIT 598 (1435)
T ss_pred HHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------CceeeehhhhccccceEEEEEeccccchhh
Confidence 99999999999999999999999999999999999887766543 578999999999999999999999999998
Q ss_pred eeeecccccc------ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCc
Q psy15244 280 LYERDCSMQR------RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 280 l~erd~s~qr------~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge 352 (1427)
+ |.+.. +....+-.+|++.|+++.++.++..|.++.++||..|-+++++.+++ .-++++||+|+|++.+
T Consensus 599 v----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrs 674 (1435)
T KOG0370|consen 599 V----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRS 674 (1435)
T ss_pred h----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeeh
Confidence 7 55443 34667789999999999999999999999999999999999999998 4569999999999999
Q ss_pred hhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCC-
Q psy15244 353 HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSC- 431 (1427)
Q Consensus 353 ~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~- 431 (1427)
..+...+||..|.....++++|.+|++++ ..+.-... ..|.|+-..+... . -|||-..
T Consensus 675 saLASkaTgypLAy~aAKlalg~~lpe~~---n~Vt~~T~------------AcFEpslDY~v~K-i-----prWDl~kf 733 (1435)
T KOG0370|consen 675 SALASKATGYPLAYTAAKLALGIPLPELK---NSVTKTTT------------ACFEPSLDYCVVK-I-----PRWDLSKF 733 (1435)
T ss_pred hhhhccCccCcHHHHHHHHhcCcccccCC---ccccccee------------cccCcchhheeee-c-----ccccHHHH
Confidence 99999999999999999999999998763 22222222 2577876654332 1 1444221
Q ss_pred cCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccccCHHH---HHhhcCCcc----cccCCccccc-ccc
Q psy15244 432 PYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPF---LLNVFDDKK----FLSGEALETN-FID 503 (1427)
Q Consensus 432 ~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~tni~~---l~~~l~~~~----f~~g~~~~t~-~i~ 503 (1427)
.+....|...+.| +|.|++.|+++|||.+|+.|..+. .+.|.. ..++ +..-|+.|. |.-.....-+ .+|
T Consensus 734 ~~vs~~igssmKS-vgEvm~iGR~feea~QKalr~vd~-~~~Gf~-~~~~~~~~~~eL~~ptd~r~faia~a~~~~~svd 810 (1435)
T KOG0370|consen 734 QRVSTEIGSSMKS-VGEVMAIGRTFEEAFQKALRMVDP-SLLGFM-STPFLDDLDEELSTPTDRRVFAIAAALAKGYSVD 810 (1435)
T ss_pred HHHHHhhchhhhh-hhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc-cccchhhHHHHhcCCccccHHHHHHHHHhcCCHH
Confidence 1222334444444 899999999999999999998854 566764 3333 334455554 2211111222 267
Q ss_pred CcchhhhcCCcchhHHHHHHHHHHHhh
Q psy15244 504 DNPQLLERNSYQTCRDMKILRFIGETL 530 (1427)
Q Consensus 504 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 530 (1427)
+..+|+.++.|++.+...|++....+.
T Consensus 811 ~~~elt~IdkWFL~k~~~i~~~~~~l~ 837 (1435)
T KOG0370|consen 811 RIHELTRIDKWFLYKLMNIVNIYKLLE 837 (1435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999888888887777663
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=280.22 Aligned_cols=299 Identities=21% Similarity=0.239 Sum_probs=217.6
Q ss_pred CCEEEEEcCCHH---------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHH
Q psy15244 57 MEKILIANRSEV---------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAK 127 (1427)
Q Consensus 57 ~kkVLIagrGei---------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~ 127 (1427)
++||.|+-+|.. |..+++++.+.||+++.++-..+. .+........... .......+. ..+. -.
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g--~~~~~~~~~~~~~-~~~~~~~~~--~~~~--~~ 523 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQG--LWETVSSLETAIE-EDSGKSVLS--SEIA--QA 523 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCC--eEEeccccccccc-ccccccccc--hhhh--hc
Confidence 457877765543 556899999999999998865542 1111100000000 000000111 1111 01
Q ss_pred hcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC------CHH-H
Q psy15244 128 NNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT------DVD-K 199 (1427)
Q Consensus 128 ~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~------s~e-e 199 (1427)
..++|.++|. .|...|+..+...|+..||+|+|+++.+...+.||..+|++++++|||+|++. .+. +.+ .
T Consensus 524 ~~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~--~~~~~~~~~~~~~~ 601 (809)
T PRK14573 524 LAKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQ--PLTLAGWKREPELC 601 (809)
T ss_pred cccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhcccChHHH
Confidence 1468999998 57778999999999999999999999999999999999999999999999986 332 222 2
Q ss_pred HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 200 VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 200 a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
+.++.+.+|||+||||+.+|+|.||.+|++.+||.++++.+... +.+++||+||.+++|++|.+++++.+..+.
T Consensus 602 ~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~ 675 (809)
T PRK14573 602 LAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVI 675 (809)
T ss_pred HHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEe
Confidence 35567789999999999999999999999999999999876532 578999999997899999999987654322
Q ss_pred --eeeecc-----ccccccc----e-EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCC
Q psy15244 280 --LYERDC-----SMQRRYQ----K-VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347 (1427)
Q Consensus 280 --l~erd~-----s~qr~~q----k-~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINp 347 (1427)
..++.+ .++..+. . .....|+ .+++++.+++.+.|.++.++||++|.++|||+++++|++||+||||
T Consensus 676 ~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt 754 (809)
T PRK14573 676 AGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDL-DLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNP 754 (809)
T ss_pred ccceEEccCCCeeCchhcccCCCCCceEEecCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeC
Confidence 233322 1222221 1 1223466 6999999999999999999999999999999999889999999999
Q ss_pred CCCCc----hhHHHHHhCCCHHHHHHHH
Q psy15244 348 RLQVE----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 348 Rl~ge----~~vte~~tGiDLv~~~i~i 371 (1427)
|++-. .+..-...|++..+..-++
T Consensus 755 ~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 755 IPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 99943 2333345788766554443
|
|
| >KOG0237|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-23 Score=240.37 Aligned_cols=403 Identities=15% Similarity=0.192 Sum_probs=285.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+.+|||+|.|.---.++..+++.-.- --||..+.+..... -|.. .++ .-.+ +-.|.+++.++|+++++..|+|
T Consensus 2 ~~~vLviGsGgREHal~wkL~qSp~v-~~v~vaPGn~G~a~--~~~~-~~~--~~dI-~~~d~~ala~f~~e~~I~lVvv 74 (788)
T KOG0237|consen 2 RVNVLVIGSGGREHALAWKLKQSPKV-KKVYVAPGNGGTAS--GDAS-KVP--NLDI-SVADFEALASFCKEHNINLVVV 74 (788)
T ss_pred ceEEEEEcCCchHhHHHHHhhcCCcc-ceEEEccCCCCccc--Cccc-cCc--cccc-ChhhHHHHHHHHHHcceeEEEE
Confidence 45899999985555677777775432 12232222211111 1111 111 0001 1246899999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC-cEEEee
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF-PVILKA 215 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy-PvVVKP 215 (1427)
|.+.- -...++..+.+.||+++||+.+++++..+|..+|++|.++|||+..|. .+++.+++..|.++.+| ++|||+
T Consensus 75 GPE~P-L~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~--~ft~~e~a~sfi~~~~~~~~ViKA 151 (788)
T KOG0237|consen 75 GPELP-LVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYK--TFTDPEEAKSFIQSATDKALVIKA 151 (788)
T ss_pred CCchh-hhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceee--eeCCHHHHHHHHHhCCCcceEEee
Confidence 98521 112678889999999999999999999999999999999999999986 78999999999999995 599999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEee-eec------cc
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERD------CS 286 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd------~s 286 (1427)
..-+.|+||.+..+.+|.-++++.....- .|| ...++|||+++ |.|+++-.+.||. .+..+- ..| -.
T Consensus 152 dGLAAGKGViv~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LE-GeEvS~laftDG~-s~~~mp~aQDHKRl~dgD 227 (788)
T KOG0237|consen 152 DGLAAGKGVIVAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLE-GEEVSFLAFTDGY-SVRPLPPAQDHKRLGDGD 227 (788)
T ss_pred cccccCCceEeeccHHHHHHHHHHHHhhh--hhccccceEehhhhcC-cceEEEEEEecCc-ccccCCcccchhhhcCCC
Confidence 99999999999999999999999887653 344 57899999999 9999999999986 333221 111 11
Q ss_pred cccccceEEEEccCCCCCHHHHHHHHHHHHH-HH-----HHcCCCCeEEEEEEEcCCCcEEEEeeCCCCC-CchhHHHHH
Q psy15244 287 MQRRYQKVIQIAPAQDMSVSVRDAITETSVR-LA-----KSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQ-VEHTLSEEI 359 (1427)
Q Consensus 287 ~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~-l~-----~alg~~G~~~VEflvd~dG~~yfIEINpRl~-ge~~vte~~ 359 (1427)
...+...+..++|+|..++++.+.+.+...+ .+ +.+.|.|+...-++++++| |.++|.|.|++ .|.++.-..
T Consensus 228 ~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~-P~vLEfN~RFGDPEtQv~l~l 306 (788)
T KOG0237|consen 228 TGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG-PKVLEFNVRFGDPETQVLLPL 306 (788)
T ss_pred CCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC-ccEEEEecccCCchhhhhHHH
Confidence 2233456778899999998877766655443 22 2456779999999999988 99999999999 667777777
Q ss_pred hCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccC--CCcCCCce
Q psy15244 360 TGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDS--SCPYPGLQ 437 (1427)
Q Consensus 360 tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~--~~~~~G~~ 437 (1427)
..-||++.++..+.|. |..+.+.+.. +....-+.+......-.-....|+.+..+..++.|+.. ..+..+..
T Consensus 307 LesDL~evi~a~~~~~-L~~~~i~w~~-----~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~v 380 (788)
T KOG0237|consen 307 LESDLAEVILACCNGR-LDTVDIVWSK-----KSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSNV 380 (788)
T ss_pred HHhHHHHHHHHHhhCC-ccccCccccc-----cceEEEEEecCCCCCCCcCCcccccCcccCCCcceEEeccccccccce
Confidence 7889999988877776 5544444443 22223334333221111122235555555555655542 23334422
Q ss_pred ecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc--cccCHHHH
Q psy15244 438 ISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG--VTTNLPFL 482 (1427)
Q Consensus 438 I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G--v~tni~~l 482 (1427)
++ + .+.+-.|++.+.|.++|.++++.+++.+.+.| .+++|.|.
T Consensus 381 vT-N-GGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~r 425 (788)
T KOG0237|consen 381 VT-N-GGRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAWR 425 (788)
T ss_pred Ee-c-CceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhhh
Confidence 22 2 44456699999999999999999999999988 36666653
|
|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=231.52 Aligned_cols=350 Identities=20% Similarity=0.251 Sum_probs=245.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCccc--CCCCHHHHHHHHHhc--CCC
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA--AYLNIPEIICIAKNN--NVD 132 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~--~yldi~~Ii~ia~~~--~vD 132 (1427)
+-|||++|-. .+.+..+|.++|+++..+....+..-. ..++..+....+ .... .-+|.++|++.+.+. .+|
T Consensus 11 ~~kiLviGvn--tR~vveSA~klGf~V~sv~~y~~~Dl~--~~a~~~l~~r~~-~~~~rfe~~de~~li~~~~~~~~dvD 85 (389)
T COG2232 11 SCKILVIGVN--TRPVVESASKLGFEVYSVQYYDPADLP--GDAISYLRERPG-ELLGRFENLDEQKLIEAAEDLAEDVD 85 (389)
T ss_pred cceEEEEeec--chHhHHHHHhcCeEEEEeEeecccccc--cccceEEEecCh-hhcCcccCCCHHHHHHHHHhhhhhcc
Confidence 5689999965 678999999999999988543332222 345555443321 1111 135778999998774 478
Q ss_pred E-EEeCCCcccccHHHHHHHHHCCCceeCCCHH-HHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc
Q psy15244 133 A-IHPGYGFLSEREDFAKAVIGAGLEFIGPAPN-VLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP 210 (1427)
Q Consensus 133 a-I~pg~gflsE~~~~a~~~e~~Gi~fiGps~e-ai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP 210 (1427)
+ |+|+.||...+. --..+..+.|++++ ....+.+|..+.+.+..+|.|.|+.. .. +. ...--++
T Consensus 86 ~~ii~~sg~e~l~~-----~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--~~---e~----~~~gekt 151 (389)
T COG2232 86 APIIPFSGFEALRT-----SGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--KI---EP----LEEGEKT 151 (389)
T ss_pred eeeeeccccccccc-----cCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--hh---hh----hhhccee
Confidence 8 888888744331 12345667788888 88999999999999999999999854 11 11 1222368
Q ss_pred EEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccc---
Q psy15244 211 VILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM--- 287 (1427)
Q Consensus 211 vVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~--- 287 (1427)
+|+||+.|+||. +.++.-.++.. ..++++|+||+ |+++||.++++|.......+.+..-.
T Consensus 152 ~IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~-G~p~Svs~is~g~~a~~la~N~QiI~~~~ 214 (389)
T COG2232 152 LILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIE-GRPVSVSFISNGSDALTLAVNDQIIDGLR 214 (389)
T ss_pred eEEeeccCCCce-eeecccccccC---------------CcceehhhhcC-CceeEEEEEecCcceEEEEEeeeeecccc
Confidence 999999999996 33333222211 15899999999 99999999999864333222211100
Q ss_pred --ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHH
Q psy15244 288 --QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVV 365 (1427)
Q Consensus 288 --qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv 365 (1427)
...+...+...|.+... .+++.+.|..++..||+.|...|||++.+.| +|+||||||+||.....|+.+|+|++
T Consensus 215 ~~~~~f~Y~GNlTP~~~~~---~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giNl~ 290 (389)
T COG2232 215 GEYSQFVYKGNLTPFPYEE---VEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGINLF 290 (389)
T ss_pred cccccceeccCcCCCcchh---hHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCCHH
Confidence 01122334556664322 2788999999999999999999999999877 99999999999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccc
Q psy15244 366 QSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSL 445 (1427)
Q Consensus 366 ~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~ 445 (1427)
++++++..|+- ++.+.++++|+...+|+..- .+ +..+ ...++| | ...+|.+|.+ +-.
T Consensus 291 ~lHi~af~G~L-------pEr~kpr~~a~krILyap~~--v~------v~~l---~~~~~~-D--iP~~Gtviek--geP 347 (389)
T COG2232 291 RLHIQAFDGEL-------PERPKPRGYACKRILYAPRT--VR------VPIL---KLSWTH-D--IPRPGTVIEK--GEP 347 (389)
T ss_pred HHHHHHhcCcC-------cCCCCcceeEEeEEEeccce--ee------cccc---cccccc-c--CCCCCcccCC--CCc
Confidence 99999999983 35667899998877765322 12 2110 112333 2 2456666654 334
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhc
Q psy15244 446 LAKIIVHTATYKSSCEKMRRALEE 469 (1427)
Q Consensus 446 l~kvi~~G~~~~eA~~r~~raL~e 469 (1427)
++.|++.+.++++|.+-+.|.++.
T Consensus 348 l~sviA~~nt~~~a~~~~er~~er 371 (389)
T COG2232 348 LCSVIASSNTRSGAESMAERLAER 371 (389)
T ss_pred eeeeeeccCCHHHHHHHHHHHHHH
Confidence 899999999999999977777654
|
|
| >KOG0370|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=247.14 Aligned_cols=303 Identities=16% Similarity=0.306 Sum_probs=259.3
Q ss_pred CCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHH
Q psy15244 57 MEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICI 125 (1427)
Q Consensus 57 ~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~i 125 (1427)
.+-++|+|.|-. |+..+|.+|++|++|+.|..++...+.....||+.|.-. ++.+.++++
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFee---------is~E~vmDi 988 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEE---------ISYERVMDI 988 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhHhh---------hhhhhhhhh
Confidence 468899998743 445799999999999999999999999999999998743 567888998
Q ss_pred HHhcCCCEEEeCCC-cccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 126 AKNNNVDAIHPGYG-FLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 126 a~~~~vDaI~pg~g-flsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
-.......|+-..| -+.-| +|-.+.+.|.+++|.+|+.+..+.|+..+.+++.+.||..|+|. .+++.+++.+|+
T Consensus 989 Ye~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wk--elt~~~eA~~F~ 1064 (1435)
T KOG0370|consen 989 YELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWK--ELTSLEEAKKFA 1064 (1435)
T ss_pred hhhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhh--hhccHHHHHHHH
Confidence 88888887777765 44333 57788899999999999999999999999999999999999997 789999999999
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEe--ee
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL--YE 282 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l--~e 282 (1427)
+++||||+|.|++--.|.-|-++++.+||+..++.+..-++ ++++++-+||++.+|++|+.++. +|+++.. .|
T Consensus 1065 ~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~----dhPVVisKfie~AkEidvDAVa~-~G~~~~haiSE 1139 (1435)
T KOG0370|consen 1065 EKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSP----DHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAISE 1139 (1435)
T ss_pred HhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCC----CCCEEhHHhhcccceechhhhcc-CCeEEEEehhh
Confidence 99999999999999999999999999999999988765443 79999999999999999999975 3565532 22
Q ss_pred eccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCC
Q psy15244 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGI 362 (1427)
Q Consensus 283 rd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGi 362 (1427)
.--.-.-+...-.-..|++.++++..+++.+++.++++++.+.|+++++|+... +++.+||+|-|.+.+.|+.....|+
T Consensus 1140 HvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~-n~lkVIECN~RaSRSFPFvSKtlgv 1218 (1435)
T KOG0370|consen 1140 HVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD-NELKVIECNVRASRSFPFVSKTLGV 1218 (1435)
T ss_pred hhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC-CeEEEEEeeeeeeccccceehhcCc
Confidence 111111122333446688899999999999999999999999999999999865 5699999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCc
Q psy15244 363 DVVQSQIKIAQGKSLT 378 (1427)
Q Consensus 363 DLv~~~i~iA~G~~l~ 378 (1427)
|+++...+..+|.+++
T Consensus 1219 dfi~~At~~i~g~~~~ 1234 (1435)
T KOG0370|consen 1219 DFIALATRAIMGVPVP 1234 (1435)
T ss_pred hHHHHHHHHHhCCCCC
Confidence 9999999999998875
|
|
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=230.32 Aligned_cols=266 Identities=20% Similarity=0.290 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCccccc
Q psy15244 65 RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSER 144 (1427)
Q Consensus 65 rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~ 144 (1427)
.+....+++++|+++|+++..+...... +.+... . .....+|+|++........
T Consensus 9 ~~~~~~~l~~a~~~~g~~~~~~~~~~~~-----------~~~~~~--~-------------~~~~~~d~v~~r~~~~~~~ 62 (277)
T TIGR00768 9 IRLDEKMLKEAAEELGIDYKVVTPPAIP-----------LTFNEG--P-------------RELAELDVVIVRIVSMFRG 62 (277)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEhHHcE-----------EeccCC--C-------------ccCCCCCEEEEechhHhhH
Confidence 4556678999999999998888543221 111100 0 0023478888765222233
Q ss_pred HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCe
Q psy15244 145 EDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGM 224 (1427)
Q Consensus 145 ~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV 224 (1427)
..+++.++..|+++++ +++++..+.||..++++++++|+|+|++. .+.+.+++.++.++++||+|+||..|+||+|+
T Consensus 63 ~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~P~t~--~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv 139 (277)
T TIGR00768 63 LAVARYLESLGVPVIN-SSDAILNAGDKFLTSQLLAKAGLPQPRTG--LAGSPEEALKLIEEIGFPVVLKPVFGSWGRLV 139 (277)
T ss_pred HHHHHHHHHCCCeeeC-CHHHHHHHhhHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHhcCCCEEEEECcCCCCCce
Confidence 4678889999999875 58999999999999999999999999986 67889999999999999999999999999999
Q ss_pred EEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec--cccccccceEEEEccCCC
Q psy15244 225 RMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD--CSMQRRYQKVIQIAPAQD 302 (1427)
Q Consensus 225 ~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd--~s~qr~~qk~ie~aPa~~ 302 (1427)
.++++.+++.++++...... -....+++|+||++....++.++..+ |+++....|. .....+...-....|. .
T Consensus 140 ~~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~-~ 214 (277)
T TIGR00768 140 SLARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVVG-DEVIAAIYRITSGHWRTNLARGGKAEPC-P 214 (277)
T ss_pred EEEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEEC-CEEEEEEEEcCCCchhhhhhcCCeeeec-C
Confidence 99999999998876543321 11257999999995432444444432 4566555442 1111110011112233 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 303 MSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 303 l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
++ +++.+.+.++++++|+ +.+.+||+++++|++||+|+|+|++.. ..+..+|+|+.+++++.
T Consensus 215 l~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 215 LT----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcchh--hhHHHHCCCHHHHHHhh
Confidence 44 4678899999999999 788999999998889999999998743 45678999999988763
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=267.28 Aligned_cols=171 Identities=27% Similarity=0.402 Sum_probs=137.1
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
++++|||+|..+|.+.+++||+++.|||++||.||+.|||+. +..++
T Consensus 973 ~~y~~~p~v~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~e~~-v~~~~-------------------------------- 1019 (1143)
T TIGR01235 973 ASYAMYPKVFTDFAKARDTYGPVSVLPTPAFFYGLADGEEIE-VDIEK-------------------------------- 1019 (1143)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCccccccccccccCCCCcEEE-EEecC--------------------------------
Confidence 778899999999999999999999999999999999999886 43333
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
|+++.|.+. .+. .++.++.|+|||++||+.+.+.+.+.+..... ...++...+
T Consensus 1020 -------------g~~~~i~~~-----~~~------~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~---~~~~KAd~~ 1072 (1143)
T TIGR01235 1020 -------------GKTLIIKLQ-----AVG------ATDSQGEREVFFELNGQPRRIKVPDRSHKAEA---AVRRKADPG 1072 (1143)
T ss_pred -------------CcEEEEEec-----ccc------ccCCCCcEEEEEEECCeEEEEEecCccccccc---ccccccccc
Confidence 898888664 333 34556899999999999999999988654422 223444456
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....|.++|.|...+|.+++|+.+ .. |..-+.+|-. .....|.||.
T Consensus 1073 ~~~~I~a~~~G~v~~~~v~~Gd~V-----------~~-Gd~L~~iEam----------------------Km~~~I~Ap~ 1118 (1143)
T TIGR01235 1073 NPAHVGAPMPGVIIEVKVSSGQAV-----------NK-GDPLVVLEAM----------------------KMETAIQAPK 1118 (1143)
T ss_pred cCceeecCCCcEEEEEEeCCCCEe-----------CC-CCEEEEEEec----------------------ceeEEEecCC
Confidence 777899999999999999999997 23 4333333311 1347899999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.|+|.++.|++||.|+.||+|++||
T Consensus 1119 ~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1119 DGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999986
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=228.84 Aligned_cols=270 Identities=15% Similarity=0.215 Sum_probs=192.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCc-cCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDK-FSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~-~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
+|..+| +..++.|++.|++.|++++++....+. .-....++|+.+.+.. ..+-.+.+...++++. ++ .++|.
T Consensus 20 ~i~~~~-shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~----~~di~~~~~~~~l~~~-~~-iiIp~ 92 (358)
T PRK13278 20 TIATIG-SHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDD----FSDILNEAVQEKLREM-NA-ILIPH 92 (358)
T ss_pred eEEEEe-cccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcc----hhhhcCHHHHHHHhhc-Cc-EEEeC
Confidence 555555 234999999999999999999876542 2344567788887641 1112344445555555 22 25555
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
|...........+ .+++++.| +.++++...||..+|++|+++|||+|++ +.+.++ ++||+||||..
T Consensus 93 -gs~v~y~~~d~l~-~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp~~ 158 (358)
T PRK13278 93 -GSFVAYLGLENVE-KFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK----YESPED-------IDRPVIVKLPG 158 (358)
T ss_pred -CCcceeecHHHHH-HCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEeCC
Confidence 4444444444444 78888665 8889999999999999999999999985 345443 47999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEec---ccccEEEeeeeccc---cccc-
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGD---KYGDVVHLYERDCS---MQRR- 290 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~D---g~G~vv~l~erd~s---~qr~- 290 (1427)
|.||+|+++|++.+|+.++++.+.+...... ...++|||||+ |.+++++++.. +.-+++.+-+|--+ ...+
T Consensus 159 g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~ 236 (358)
T PRK13278 159 AKGGRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVV-GVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRI 236 (358)
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCC-CcEEEEEEEEeccCCeEEEEeeceeeeecccceeec
Confidence 9999999999999999999887654221111 47899999999 88999999974 33233333222211 0000
Q ss_pred ------------cceEEEEccCCCCCHHHHHHHHHHHHHHHHH----c--CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 291 ------------YQKVIQIAPAQDMSVSVRDAITETSVRLAKS----L--GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 291 ------------~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~a----l--g~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
..-.....|+ .+.+.+..++.+.+.+++++ + |..|++++|+++++++++|++|+|+|++|+
T Consensus 237 p~~~~~~~~~~p~~v~~Gn~P~-~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~gg 315 (358)
T PRK13278 237 PAKDQLELGIDPTYVVVGNIPV-VLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIVAG 315 (358)
T ss_pred cchhhhhcccCCceeEecceec-cchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcccCC
Confidence 1112233466 57788889999999999988 4 666999999999999999999999999764
|
|
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=227.17 Aligned_cols=277 Identities=18% Similarity=0.203 Sum_probs=199.2
Q ss_pred EEEEEcCC---HHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 59 KILIANRS---EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 59 kVLIagrG---eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++|+.|. -.+.+++++++++|++++.++........... .+..+. .. -+..++|+|+
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~-~~~~~~-----------~~-------~~~~~~d~v~ 62 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA-ASSIHY-----------KG-------RKLPHFDAVI 62 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCC-cccEEE-----------CC-------cccCCCCEEE
Confidence 57777732 34678999999999999988644221111000 011111 00 0123689999
Q ss_pred eCCCcc-ccc-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEE
Q psy15244 136 PGYGFL-SER-EDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVI 212 (1427)
Q Consensus 136 pg~gfl-sE~-~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvV 212 (1427)
+..+.. ... ...+..++..| +++++++.++..+.||..++++++++|||+|++. .+.+.+++.++++++ +||+|
T Consensus 63 ~~~~~~~~~~~~~~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~~P~V 139 (300)
T PRK10446 63 PRIGTAITFYGTAALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTG--IAHSPDDTSDLIDMVGGAPLV 139 (300)
T ss_pred EcCCCchhhHHHHHHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHHhCCCCEE
Confidence 864321 111 23467888999 5678999999999999999999999999999986 567888888888877 79999
Q ss_pred EeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeecc--CCceEEEEEEecccccEEEeeeeccccccc
Q psy15244 213 LKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYID--RPRHIEVQILGDKYGDVVHLYERDCSMQRR 290 (1427)
Q Consensus 213 VKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIe--ggreieVqvl~Dg~G~vv~l~erd~s~qr~ 290 (1427)
|||..|+||+||+++++.+++..+++..... +..+++|+||+ .++++.|.++++ +++...+|..+-...
T Consensus 140 vKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g~d~rv~vig~---~~~~~~~r~~~~~~~ 210 (300)
T PRK10446 140 VKLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQGCDIRCLVVGD---EVVAAIERRAKEGDF 210 (300)
T ss_pred EEECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCCceEEEEEECC---EEEEEEEEecCCCch
Confidence 9999999999999999999988887654321 36799999996 379999998753 566666654322110
Q ss_pred cceE---EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHH
Q psy15244 291 YQKV---IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQS 367 (1427)
Q Consensus 291 ~qk~---ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~ 367 (1427)
..+. ....|. .++ +++.+.|.++++++|+. .+.|||+++++| +||+|||++++. ..++.++|+|+.+.
T Consensus 211 ~~n~~~g~~~~~~-~l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~--~~~~~~~g~~~~~~ 281 (300)
T PRK10446 211 RSNLHRGGAASVA-SIT----PQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGL--EGIEKTTGIDIAGK 281 (300)
T ss_pred hheeccCCeeccC-CCC----HHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCCh--hhhHHHHCcCHHHH
Confidence 0111 111122 344 55788999999999997 889999999888 999999998864 45677899999999
Q ss_pred HHHHHcCC
Q psy15244 368 QIKIAQGK 375 (1427)
Q Consensus 368 ~i~iA~G~ 375 (1427)
.++.....
T Consensus 282 ~~~~i~~~ 289 (300)
T PRK10446 282 MIRWIERH 289 (300)
T ss_pred HHHHHHHh
Confidence 98876443
|
|
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=217.99 Aligned_cols=177 Identities=24% Similarity=0.447 Sum_probs=132.0
Q ss_pred HhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHc
Q psy15244 168 TLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALAS 247 (1427)
Q Consensus 168 ~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~ 247 (1427)
++.||..++++++++|||+|++. .+.+.+++.++++.++||+||||..|+||+||+++++.+||..+++.......
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~--~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTR--IVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EE--EECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 47899999999999999999987 78999999999999999999999999999999999999999999988765432
Q ss_pred cCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccc--ccc---ceEEEEccCCCCCHHHHHHHHHHHHHHHHHc
Q psy15244 248 FGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ--RRY---QKVIQIAPAQDMSVSVRDAITETSVRLAKSL 322 (1427)
Q Consensus 248 fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~q--r~~---qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al 322 (1427)
..+..+++|+||+ |.++++.++.+ +|.++.+...+.... .+. .......+. +....+++.+.+.++++++
T Consensus 77 ~~~~~~ivqe~i~-g~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 151 (184)
T PF13535_consen 77 LGNGPVIVQEYIP-GDEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPS---EPPLPEELRDLARKLLRAL 151 (184)
T ss_dssp -HSSSEEEEE----SEEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEeee-eeeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeeccc---ccccHHHHHHHHHHHHHHc
Confidence 1246899999999 79999999988 677765443222222 111 122222222 3334489999999999999
Q ss_pred CC-CCeEEEEEEEcCCCcEEEEeeCCCCCCch
Q psy15244 323 GY-SNAGTVEFLLDKDDNFYFIEVNPRLQVEH 353 (1427)
Q Consensus 323 g~-~G~~~VEflvd~dG~~yfIEINpRl~ge~ 353 (1427)
|| .|++++||+++++|++||||||||++|.+
T Consensus 152 g~~~G~~~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 152 GYRNGFFHIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp T--SEEEEEEEEEETCCEEEEEEEESS--STT
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECccCCCCC
Confidence 99 79999999999999999999999999864
|
|
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-21 Score=220.59 Aligned_cols=263 Identities=21% Similarity=0.307 Sum_probs=188.3
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCcccccHHHH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFA 148 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a 148 (1427)
...++.+|+++|+++..++.... .+.+... . ..-.++|++++-...-.....++
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~-----------~~~~~~~--~-------------~~~~~~d~v~~r~~~~~~~~~~~ 65 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPAL-----------PLPFGER--P-------------KELEDVDVAIIRCVSQSRALYSA 65 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhhe-----------EEEcCCC--c-------------cccCCCCEEEEcCcchhhHHHHH
Confidence 45789999999999988865432 1111100 0 01124777776421111223457
Q ss_pred HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEec
Q psy15244 149 KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228 (1427)
Q Consensus 149 ~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~ 228 (1427)
..++..|+++++ ++++++.+.||..++++++++|||+|++. .+.+.+++.++.+.+|||+|+||..|+||+|+++++
T Consensus 66 ~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~ 142 (280)
T TIGR02144 66 RLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTY--LAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIR 142 (280)
T ss_pred HHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeE--eeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEEC
Confidence 788999999886 57999999999999999999999999986 567888888888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC-CceEEEEEEecccccEEEeeeeccccccccce-EEEEccCCCCCHH
Q psy15244 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDR-PRHIEVQILGDKYGDVVHLYERDCSMQRRYQK-VIQIAPAQDMSVS 306 (1427)
Q Consensus 229 s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg-greieVqvl~Dg~G~vv~l~erd~s~qr~~qk-~ie~aPa~~l~~e 306 (1427)
+.+++.++++.... .....+..+++|+||++ ++++++.++++ ..++...|...-.+.+.. .....|. .+++
T Consensus 143 ~~~~l~~~~~~~~~--~~~~~~~~~ivQefI~~~~~d~~v~vig~---~~~~~~~r~~~~~~~~~~~g~~~~~~-~~~~- 215 (280)
T TIGR02144 143 DKDELESLLEHKEV--LGGSQHKLFYIQEYINKPGRDIRVFVIGD---EAIAAIYRYSNHWRTNTARGGKAEPC-PLDE- 215 (280)
T ss_pred CHHHHHHHHHHHHh--hcCCcCCeEEEEcccCCCCCceEEEEECC---EEEEEEEEcCCchhhhhhcCCceecc-CCCH-
Confidence 99999887753211 11112457999999986 58888887743 333322222111111111 1122343 2444
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 307 VRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 307 ~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
++.+.|.++++++|+ +.++|||+++++|++||+|||+|++-.. ++..+|+|+.+..++.+.
T Consensus 216 ---~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 216 ---EVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred ---HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh--hhHhhCCCHHHHHHHHHH
Confidence 577889999999996 6889999999888899999999987542 456799999999998764
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-23 Score=201.86 Aligned_cols=110 Identities=47% Similarity=0.803 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+|||||+|||++++|++|+|+++|++++++++++|+.+.|.++||+.|.++ +....++|+|++.|++++++.++|++|
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~-~~~~~~~yl~~e~I~~ia~~~g~~~i~ 79 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEP-PGPSPESYLNIEAIIDIARKEGADAIH 79 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEE-SSSGGGTTTSHHHHHHHHHHTTESEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecC-cchhhhhhccHHHHhhHhhhhcCcccc
Confidence 5899999999999999999999999999999999999999999999999998 667889999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVL 166 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai 166 (1427)
|||||++|+++|++.|+++|+.|+||+++++
T Consensus 80 pGyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 80 PGYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp STSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred cccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 9999999999999999999999999999875
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=213.19 Aligned_cols=294 Identities=16% Similarity=0.175 Sum_probs=211.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCcc--ccccceEEEcCCCCCcccCCCCH--HHHHHHHHhcCCCEE
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAH--RTKVDQAFLVGKGMPPVAAYLNI--PEIICIAKNNNVDAI 134 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~--~~~aDe~~~i~~~~~~~~~yldi--~~Ii~ia~~~~vDaI 134 (1427)
+|..+| +..|+.|++-|++.|++|+++.......... +..+|+.+.++ +|.++ +.+.+-.++.+ +|
T Consensus 19 ~i~t~~-SHsal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~-------~f~~~~~~~~~~~l~~~n--~i 88 (366)
T PRK13277 19 KIGVLA-SHSALDVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLD-------KFKDILSEKVQDELREEN--AI 88 (366)
T ss_pred EEEEEe-cchHHHHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEec-------chhhhhhHHHHHHHHHCC--eE
Confidence 566666 3469999999999999999997655332222 23689988864 34332 35555555543 45
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHh--CCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEE
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTL--GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVI 212 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~--~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvV 212 (1427)
+--.|.+.+....-..-.+.-+|++|+. ..++.- +||..+.++|+++||++|+.+ .++ +++.+|||
T Consensus 89 ~iPh~sf~~y~g~~~ie~~~~vp~fGnr-~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~----~~p-------~eId~PVI 156 (366)
T PRK13277 89 FVPNRSFAVYVGYDAIENEFKVPIFGNR-YLLRWEERTGEKNYYWLLEKAGIPYPKLF----KDP-------EEIDRPVI 156 (366)
T ss_pred EecCCCeEEEecHHHHhhcCCCCcccCH-HHhhhhhccCHHHHHHHHHHcCCCCceee----cCc-------cccCccEE
Confidence 4445766666544333335889999874 455554 788888889999999999965 333 36689999
Q ss_pred EeecCCCC--CcCeEEecCHHHHHHHHHHHHHHHHH-ccCCCcEEEEeeccCCceEEEEEEecc-cccEEEe--eeeccc
Q psy15244 213 LKAAFGGG--GRGMRMVANKDAIEENFKRAQSEALA-SFGKDDMLVEKYIDRPRHIEVQILGDK-YGDVVHL--YERDCS 286 (1427)
Q Consensus 213 VKP~~GgG--GrGV~iV~s~eeL~~a~~~a~~ea~~-~fg~~~vlVEeyIeggreieVqvl~Dg-~G~vv~l--~erd~s 286 (1427)
|||..|.| |+|++++.|.+|+....+.......- .-+..+++|||||. |.|+.++++.+. +|++..+ ..|.-+
T Consensus 157 VKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~-G~ey~~d~F~s~l~g~ve~l~id~R~es 235 (366)
T PRK13277 157 VKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI-GAHFNFNYFYSPIRDRLELLGIDRRIQS 235 (366)
T ss_pred EEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC-CCEEEEEEEEeccCCcEEEEEEeecccc
Confidence 99999999 99999999999998876554321000 00124567999999 899999999883 5654443 222111
Q ss_pred -----------------cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcC------CCCeEEEEEEEcCCCcEEEE
Q psy15244 287 -----------------MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG------YSNAGTVEFLLDKDDNFYFI 343 (1427)
Q Consensus 287 -----------------~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg------~~G~~~VEflvd~dG~~yfI 343 (1427)
...++..++ ..|. .+.+.+.+++.+.+.+++++++ +.|++++|+++++++++|++
T Consensus 236 n~dg~~r~pa~~ql~~~~~p~~vv~G-~~p~-t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~ 313 (366)
T PRK13277 236 NLDGFVRLPAPQQLKLNEEPRYIEVG-HEPA-TIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVY 313 (366)
T ss_pred ccccccccChhhhhhcccCCceEEEc-Cccc-cchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEE
Confidence 011122222 3566 5777899999999999999976 67999999999999999999
Q ss_pred eeCCCCCCchhHHHHHhCCCHHHHHHH--HHcCCCCc
Q psy15244 344 EVNPRLQVEHTLSEEITGIDVVQSQIK--IAQGKSLT 378 (1427)
Q Consensus 344 EINpRl~ge~~vte~~tGiDLv~~~i~--iA~G~~l~ 378 (1427)
|||||++|+.++. +.+|.|...+.+. +.+|+++.
T Consensus 314 EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 314 DVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EEcCCcCCCccce-eecCCCcHHHHhcCccccCCcch
Confidence 9999999987665 3479999999999 89999875
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-20 Score=244.48 Aligned_cols=563 Identities=19% Similarity=0.208 Sum_probs=307.8
Q ss_pred hheeeccceeEeecccccccchhhhhcccccccccccccccccc---ccccccCCCeEEeecCcccCCCCCCCcccC---
Q psy15244 606 VTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEF---VNSVRKLKHILLTDTTFRDAHQSLLATRVR--- 679 (1427)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~---~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~--- 679 (1427)
+.|++.++.++|+|||+||+|||+.++|.|+.|.+.+++--+.. ...|.....-. +|+-+|=-+.++| -|++
T Consensus 524 ~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggat-fd~~~r~l~e~p~-erl~~~r 601 (1146)
T PRK12999 524 ADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGAT-FDVAYRFLKEDPW-ERLAELR 601 (1146)
T ss_pred HHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcc-hhhhccccCCCHH-HHHHHHH
Confidence 36899999999999999999999999999999999986522221 00011111111 1444444433332 1111
Q ss_pred -----------------------HHHHHH-HHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 680 -----------------------TYDLKK-VSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 680 -----------------------t~d~l~-ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
.++..+ ..+...+ .|++.+=+.-+ -+..+.++..-+.+.+.-.
T Consensus 602 ~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~--~Gid~~rifd~-----------lnd~~~~~~~i~~vk~~g~ 668 (1146)
T PRK12999 602 EAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAA--AGIDVFRIFDS-----------LNWVENMRVAIDAVRETGK 668 (1146)
T ss_pred HhCCCCeEEEEecccccccccCCCchHHHHHHHHHHH--cCCCEEEEecc-----------CChHHHHHHHHHHHHHcCC
Confidence 112222 1333334 57776655321 1223334333333332221
Q ss_pred eeeeccccccccc---------CCCcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh-cCCCcEEEEEE
Q psy15244 736 QMILRGNSLVGYS---------NYSPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV-TGGSTIVEATI 803 (1427)
Q Consensus 736 qml~Rg~n~vgy~---------~~~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~-G~~~~~v~~~i 803 (1427)
.+. -.++|+ .|..+..-++++.+.+.|+|+++|-|..-- -..+...+..+|+. +. .+..
T Consensus 669 --~~~--~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~i---pi~~-- 739 (1146)
T PRK12999 669 --IAE--AAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDL---PIHL-- 739 (1146)
T ss_pred --eEE--EEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCC---eEEE--
Confidence 111 123444 245556667788889999999999998874 35667777777754 23 2222
Q ss_pred EeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEc--cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 804 CYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLK--DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 804 ~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~--Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
-.| .|.-.-..-+-++.++|||+|-.+ =+.|..---.+..++.+|+.. +...++... .=..+++
T Consensus 740 --H~H--------nt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~--~~~t~idl~--~l~~~s~ 805 (1146)
T PRK12999 740 --HTH--------DTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGT--ERDTGLDLD--AIRKLSP 805 (1146)
T ss_pred --EeC--------CCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhc--CCCCCcCHH--HHHHHHH
Confidence 111 112223333445667899976433 334443335577888888732 222111111 1123344
Q ss_pred HHHHHH-------hcCCEEEeccc--cC-CCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCC--CCCC
Q psy15244 882 TLACVK-------AGADIVDVAAD--SM-SGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYA--PAHN 949 (1427)
Q Consensus 882 ~laAi~-------AGad~VD~av~--Gm-G~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~--~~~k 949 (1427)
+++.++ .|....|+.+. -| ||..+ .+..-|+..|... .++.+.+--..+.+.+|.++ -|..
T Consensus 806 ~~~~~r~~y~~~~~~~~~~~~~v~~~~~PGG~~s-----nl~~q~~~~g~~~--~~~~v~~~~~~v~~~~G~~~~VTP~S 878 (1146)
T PRK12999 806 YWEAVRPYYAPFESGLKSPTTEVYLHEMPGGQYS-----NLKQQARALGLGD--RFEEVKEMYAAVNRMFGDIVKVTPSS 878 (1146)
T ss_pred HHHHHHhHhhccCCCCCCCCcCeEEecCCCcccc-----hHHHHHHHCChHh--HHHHHHHHHHHHHHHcCCCceeCccc
Confidence 444443 33333332221 11 12222 2555566665433 34455555666677777764 4445
Q ss_pred cccccchhhhhHHHH--HHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q psy15244 950 LLWRCGIDLHDVCDY--SSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFL 1027 (1427)
Q Consensus 950 pivG~~~f~~~~~~~--~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~ 1027 (1427)
-+||.-++-.-.... .+.+. ....| .|. .+++.. -.=++|+-|||.- +++.+.+
T Consensus 879 q~vg~~A~~~v~~~~~~~~~~~-~~~~~-~~~-~~v~~~-~~G~~G~~~~~~~--------------~~~~~~~------ 934 (1146)
T PRK12999 879 KVVGDMALFMVQNGLTPEDVYE-PGEDL-DFP-DSVVSF-LKGELGQPPGGFP--------------EPLQKKV------ 934 (1146)
T ss_pred hhhHHHHHHHHhhccchhhhhc-cCcee-eCC-HHHHHH-hCcCCCCCCCCCC--------------HHHHHHH------
Confidence 566665532111100 00000 01112 121 111000 0002344444431 1111110
Q ss_pred cCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCC
Q psy15244 1028 LGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKA 1107 (1427)
Q Consensus 1028 lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~ 1107 (1427)
|+..--+| .++.+.. +|..| +.+++.+.+. ..++
T Consensus 935 l~~~~~~~-----------------~rp~~~~----------------------~~~d~-~~~~~~~~~~----~~~~-- 968 (1146)
T PRK12999 935 LKGEEPIT-----------------VRPGELL----------------------EPVDF-EAERAELEEK----LGRE-- 968 (1146)
T ss_pred hCCCCCCc-----------------CChhhhC----------------------CcccH-HHHHHHHHHH----hcCC--
Confidence 11000000 0010000 01111 1233322110 0111
Q ss_pred CCCccccccccCCCccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcC
Q psy15244 1108 EFDPIMACDYREDEPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIF 1186 (1427)
Q Consensus 1108 ~~~~~~~~~~~e~~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1186 (1427)
..+.| ++++|||+|..+|.+.+++||+++.|||+.||.|++.||++. +..
T Consensus 969 ------------~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~e~~~-~~~---------------- 1019 (1146)
T PRK12999 969 ------------VTDRDVLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEEIE-VEI---------------- 1019 (1146)
T ss_pred ------------CCHHHHHHHHhCcHHHHHHHHHHHhcCCcccCCCchhhcccCcCceEE-eec----------------
Confidence 22234 778899999999999999999999999999999999999986 322
Q ss_pred chhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccc
Q psy15244 1187 PKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQ 1266 (1427)
Q Consensus 1187 p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~ 1266 (1427)
++|+++.+.+. .+. ..+..+.|++||++||+.+.+.+.+.
T Consensus 1020 -----------------------------~~gk~~~i~~~-----~~~------~~~~~g~~~~~~~vnG~~~~V~v~d~ 1059 (1146)
T PRK12999 1020 -----------------------------EPGKTLIIKLE-----AIG------EPDEDGMRTVYFELNGQPREVQVRDR 1059 (1146)
T ss_pred -----------------------------CCCceeEEEee-----ccc------CcccCCcEEEEEEECCEEEEEEEecC
Confidence 34788888553 343 34556899999999999999999987
Q ss_pred cccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhh
Q psy15244 1267 QILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKL 1346 (1427)
Q Consensus 1267 ~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~ 1346 (1427)
..-.. ....++...+....|.++|.|+..+|.++.|+.+ .. |..-+.++
T Consensus 1060 ~~~~~---~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V-----------~~-G~~L~~le---------------- 1108 (1146)
T PRK12999 1060 SVKST---VAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEV-----------KA-GDPLAVIE---------------- 1108 (1146)
T ss_pred ccccc---cccccccCCCCCceEeCCceEEEEEEEcCCCCEE-----------CC-CCEEEEEE----------------
Confidence 53221 1223444456678899999999999999999997 23 33222222
Q ss_pred hccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1347 KLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1347 ~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
+. .....|.||.+|+|.++.|++|+.|+.||.|++||
T Consensus 1109 -----am-Kme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1109 -----AM-KMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred -----cc-ccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 00 13578999999999999999999999999999987
|
|
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=195.64 Aligned_cols=167 Identities=23% Similarity=0.400 Sum_probs=140.7
Q ss_pred HHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe-ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEe
Q psy15244 179 ALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK-AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEK 257 (1427)
Q Consensus 179 a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK-P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEe 257 (1427)
|+++|||+|||. .+.+.+++.++++++|||+|+| +..|..|+|..++++.+|+..+++.. +..++++|+
T Consensus 1 l~~~gip~~~~~--~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPYA--TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EEE--EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 578999999997 7999999999999999999999 55666999999999999999988754 468999999
Q ss_pred eccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC
Q psy15244 258 YIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337 (1427)
Q Consensus 258 yIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d 337 (1427)
||+..+|+++.+.++.+|++.. ++--..+++++.....++|+ .++++..+++.+.|.+++++|+|.|++.|||+++++
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~-yp~~en~~~~~il~~s~~Pa-~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~ 148 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRF-YPPVENVHRDGILHESIAPA-RISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKD 148 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEE-EEEEEEEEETTEEEEEEESC-SS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETT
T ss_pred ccCCcEEEEEEEEEcCCCCEEE-EcCceEEEECCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecC
Confidence 9999999999999999998665 44445778888888889999 599999999999999999999999999999999999
Q ss_pred Cc-EEEEeeCCCCCCchhHHH
Q psy15244 338 DN-FYFIEVNPRLQVEHTLSE 357 (1427)
Q Consensus 338 G~-~yfIEINpRl~ge~~vte 357 (1427)
|+ +||.||.||++.+.++|.
T Consensus 149 g~~v~vNEiaPRpHnSGh~Ti 169 (172)
T PF02222_consen 149 GDEVLVNEIAPRPHNSGHWTI 169 (172)
T ss_dssp STEEEEEEEESS--GGGGGHH
T ss_pred CCEEEEEeccCCccCcccEee
Confidence 98 999999999998755553
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=233.14 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=187.6
Q ss_pred HHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCH--HHHHHHHHhcCCCEEEeCCCcccccHHH-----
Q psy15244 75 ACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNI--PEIICIAKNNNVDAIHPGYGFLSEREDF----- 147 (1427)
Q Consensus 75 aa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi--~~Ii~ia~~~~vDaI~pg~gflsE~~~~----- 147 (1427)
-.+++|++.+.+|+..|..+. |+++++++ .+.. + +++ +.|++.|++.++++++.. +|+..|
T Consensus 206 fY~klGf~~~~~y~~~d~~~~-----~~~~~~g~-~~~~-~-l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~g 273 (547)
T TIGR03103 206 LYEKLGFRRIPVFALKRKNAI-----NERLFSGP-APEA-D-LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSLG 273 (547)
T ss_pred HHHHCCCEEeeEEEEeccCCc-----CcccccCC-Cccc-c-cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecCC
Confidence 345678888888887776555 88899873 2222 2 677 899999999999999955 232212
Q ss_pred --HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeE
Q psy15244 148 --AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225 (1427)
Q Consensus 148 --a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~ 225 (1427)
+..|... +. .-+++.++..++||..++++++++|||+|++. .+.+.+++.++++++| |+||||..|++|+||+
T Consensus 274 ~~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~--~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~ 348 (547)
T TIGR03103 274 GRSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQ--LAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGIS 348 (547)
T ss_pred ceEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhC-CEEEEECCCCCCcCeE
Confidence 1112111 11 12689999999999999999999999999987 5788999999999998 6999999999999999
Q ss_pred E-ecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceE----------------EEEEEecccccEEEeeeeccccc
Q psy15244 226 M-VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI----------------EVQILGDKYGDVVHLYERDCSMQ 288 (1427)
Q Consensus 226 i-V~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggrei----------------eVqvl~Dg~G~vv~l~erd~s~q 288 (1427)
+ +++.++|.++++.+.+. ...+|+|+||+ |+++ ..++++||++++.+|+++.....
T Consensus 349 v~v~~~~eL~~a~~~a~~~------~~~vlvEe~i~-G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~ 421 (547)
T TIGR03103 349 VDVRTPDDLEAAIAKARQF------CDRVLLERYVP-GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRR 421 (547)
T ss_pred EecCCHHHHHHHHHHHHhc------CCcEEEEEecc-CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCc
Confidence 7 99999999999887643 35899999999 5444 55777888888777766542211
Q ss_pred cc-------------------------------cceEE--------EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEE
Q psy15244 289 RR-------------------------------YQKVI--------QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT 329 (1427)
Q Consensus 289 r~-------------------------------~qk~i--------e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~ 329 (1427)
.+ .+.+. ....+..+++++.+++.+.|+++++++|+. .+.
T Consensus 422 ~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~-~~G 500 (547)
T TIGR03103 422 AAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIP-VVG 500 (547)
T ss_pred cCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCC-eEE
Confidence 11 01110 001111346678889999999999999996 778
Q ss_pred EEEEEcC-C-CcEEEEeeCCCCCCc
Q psy15244 330 VEFLLDK-D-DNFYFIEVNPRLQVE 352 (1427)
Q Consensus 330 VEflvd~-d-G~~yfIEINpRl~ge 352 (1427)
||+++++ + ..++|||+|.|++-.
T Consensus 501 vD~i~~~~~~p~~~iiEvN~~Pgl~ 525 (547)
T TIGR03103 501 IDFLVPDVTGPDYVIIEANERPGLA 525 (547)
T ss_pred EEEEeccCCCCCeEEEEecCCcccc
Confidence 9999875 2 236999999999954
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=232.69 Aligned_cols=256 Identities=22% Similarity=0.322 Sum_probs=188.8
Q ss_pred CCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE--------EEeCCCcccccHHHHHHHHHCCCceeC
Q psy15244 89 EQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA--------IHPGYGFLSEREDFAKAVIGAGLEFIG 160 (1427)
Q Consensus 89 ~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa--------I~pg~gflsE~~~~a~~~e~~Gi~fiG 160 (1427)
+.|....+.+.+++.+.+++ +...|++.|++.++++ ++||||+.++ .++..+.. +
T Consensus 141 ~~~~~~~~~~~~~~~~~lgp---------st~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~------~i~~~~~~--~ 203 (727)
T PRK14016 141 DLEAALARLRELDEDERLGP---------STAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQR------RIQAAETD--Q 203 (727)
T ss_pred CHHHHHHHHHHHHHhcccCC---------CHHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHH------HHHHhcCC--C
Confidence 44555777888889988871 2469999999999988 9999999775 34444443 8
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEE-ecCHHHHHHHHHH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRM-VANKDAIEENFKR 239 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~i-V~s~eeL~~a~~~ 239 (1427)
++..+++.++||..++++|+++|||+|++. .+.+.+++.++++++|||+||||..|++|+||++ +++.+|+.++++.
T Consensus 204 ~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~--~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~ 281 (727)
T PRK14016 204 TSAIAVDIACDKELTKRLLAAAGVPVPEGR--VVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAV 281 (727)
T ss_pred CcHHHHHHhCCHHHHHHHHHHCCcCCCCee--EeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999997 7899999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHHccCCCcEEEEeeccCCceEEEE----------------EEecccccEEEeeeeccccccc-------------
Q psy15244 240 AQSEALASFGKDDMLVEKYIDRPRHIEVQ----------------ILGDKYGDVVHLYERDCSMQRR------------- 290 (1427)
Q Consensus 240 a~~ea~~~fg~~~vlVEeyIeggreieVq----------------vl~Dg~G~vv~l~erd~s~qr~------------- 290 (1427)
+... +..++||+||+ |+++.+. +++||++++.+|.++...-.||
T Consensus 282 a~~~------~~~viVEe~I~-G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~ 354 (727)
T PRK14016 282 ASKE------SSDVIVERYIP-GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKL 354 (727)
T ss_pred HHHh------CCeEEEEEecC-CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCC
Confidence 7653 36899999999 5555554 4444444444444331111111
Q ss_pred ---------------------cceEEEEc--------cCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-----
Q psy15244 291 ---------------------YQKVIQIA--------PAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK----- 336 (1427)
Q Consensus 291 ---------------------~qk~ie~a--------Pa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~----- 336 (1427)
.+++.-.. -+...++++.+++.+.|.++++.+|+. .+.||++.++
T Consensus 355 d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl~-~~GvDi~~~di~~p~ 433 (727)
T PRK14016 355 DDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGLD-IAGVDVVCEDISKPL 433 (727)
T ss_pred CHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCccccc
Confidence 11111000 011235567788899999999999994 7889998863
Q ss_pred -CCcEEEEeeCCCCCCch-hHHHHHhCCCHHHHHHHH
Q psy15244 337 -DDNFYFIEVNPRLQVEH-TLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 337 -dG~~yfIEINpRl~ge~-~vte~~tGiDLv~~~i~i 371 (1427)
.....+||||..++-.. .......+.|.....+..
T Consensus 434 ~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 434 EEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred ccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 12379999999998542 212223456666666554
|
|
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-19 Score=193.87 Aligned_cols=186 Identities=26% Similarity=0.400 Sum_probs=136.2
Q ss_pred HHHhCCCCCCCCccccCCCHHH--HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEE
Q psy15244 178 AALKADVPIIPGTTEPVTDVDK--VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLV 255 (1427)
Q Consensus 178 ~a~~aGVpvp~~~~~~v~s~ee--a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlV 255 (1427)
+++++|||+|++....-.+... ..+....++||+||||..+|+|.|+.+|++.+||..+++.+.+. +..++|
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceEEE
Confidence 4789999999997322222222 34567889999999999999999999999999999999886532 468999
Q ss_pred EeeccCCceEEEEEEecccccEEEeeeeccc-----cccc----cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q psy15244 256 EKYIDRPRHIEVQILGDKYGDVVHLYERDCS-----MQRR----YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSN 326 (1427)
Q Consensus 256 EeyIeggreieVqvl~Dg~G~vv~l~erd~s-----~qr~----~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G 326 (1427)
|+||+ |+|++|.+++++...+....+.... .... ........|+ .+++++.++|.+.|.++.++||.+|
T Consensus 75 EefI~-G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa-~l~~~~~~~i~~~a~~a~~~lg~~~ 152 (203)
T PF07478_consen 75 EEFIS-GREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPA-DLSEELQEKIKEIAKKAFKALGCRG 152 (203)
T ss_dssp EE--S-SEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS--SS-HHHHHHHHHHHHHHHHHTTTCS
T ss_pred Eeeec-ccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 99997 9999999999877555554433211 1111 2455667787 6999999999999999999999999
Q ss_pred eEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhCCCHHHHHHHH
Q psy15244 327 AGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 327 ~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tGiDLv~~~i~i 371 (1427)
.+.+||+++++|++||+|+|+-++-+ .+..-...|+++.+..-++
T Consensus 153 ~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 153 YARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp EEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred ceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999988832 2333344777776665543
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-18 Score=196.60 Aligned_cols=269 Identities=20% Similarity=0.290 Sum_probs=204.8
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC-CCcccccHHH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG-YGFLSEREDF 147 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg-~gflsE~~~~ 147 (1427)
+..++++++..|+.+.-++...+.. ...++... . ..-.++|.++|. .|+..|+-.+
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~--------------~-----~~~~~~~vvfp~lhG~~gEDg~i 79 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGL----WMLDKEVT--------------K-----RVLQKADVVFPVLHGPYGEDGTI 79 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccce----EEeccccc--------------h-----hhcccCCEEEEeCCCCCCCCchH
Confidence 5568999999999988887665421 01111100 0 222457788887 7888899899
Q ss_pred HHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC--CHHHHHHHHHhcCCcEEEeecCCCCCcCeE
Q psy15244 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT--DVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225 (1427)
Q Consensus 148 a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~--s~eea~~~a~~iGyPvVVKP~~GgGGrGV~ 225 (1427)
...++..|+|++|++..+...+.||..+|.+++..|+|++++...... +...+.++.+..+||++|||...+++.|+.
T Consensus 80 qg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~ 159 (317)
T COG1181 80 QGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRS 159 (317)
T ss_pred HHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCccceeeEE
Confidence 999999999999999999999999999999999999999998621111 223345677789999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE------------eeeeccccccccce
Q psy15244 226 MVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH------------LYERDCSMQRRYQK 293 (1427)
Q Consensus 226 iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~------------l~erd~s~qr~~qk 293 (1427)
.+++.+|+..+++.+... +.++++|+|+. ++|++|.++.+.. .... ++.++.+.... ..
T Consensus 160 ~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~-gg 230 (317)
T COG1181 160 PVNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLST-GG 230 (317)
T ss_pred EeeeccchHHHHHHHHHh------CCceeeccCCC-cceEEEEecCCcc-cceecCceEEecCCCeEEeeeccccCC-CC
Confidence 999999999987776654 78999999999 9999999998744 2221 12222222221 11
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCC-Cc---hhHHHHHhCCCHHHHH
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQ-VE---HTLSEEITGIDVVQSQ 368 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~-ge---~~vte~~tGiDLv~~~ 368 (1427)
.....|+ .++++..+++.+.|.++.+++|..|.+.+||++++ +|++|++|+|+.+| -. .|..-...|++.....
T Consensus 231 ~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~ 309 (317)
T COG1181 231 AQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILV 309 (317)
T ss_pred ceeeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHH
Confidence 3446677 59999999999999999999999999999999998 78899999999999 32 2333334566655544
Q ss_pred HH
Q psy15244 369 IK 370 (1427)
Q Consensus 369 i~ 370 (1427)
..
T Consensus 310 ~~ 311 (317)
T COG1181 310 LR 311 (317)
T ss_pred HH
Confidence 43
|
|
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=186.07 Aligned_cols=174 Identities=19% Similarity=0.297 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE-EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHcc
Q psy15244 170 GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV-ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248 (1427)
Q Consensus 170 ~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv-VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~f 248 (1427)
++|..+|++|+++|||++++. .++|.+++.+++++.++|+ ||||..-++|+||.++.+.+|..+++++.... ..|
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~--~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~f 76 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYK--VFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKF 76 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EE--EESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STT
T ss_pred CCHHHHHHHHHHcCCCCCCee--EECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--ccc
Confidence 379999999999999999987 7999999999999999999 99999999999999999999999999988753 356
Q ss_pred C--CCcEEEEeeccCCceEEEEEEecccccEEEe-eeecccc------ccccceEEEEccCCCCCHHHHHHHHH-HHHHH
Q psy15244 249 G--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHL-YERDCSM------QRRYQKVIQIAPAQDMSVSVRDAITE-TSVRL 318 (1427)
Q Consensus 249 g--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l-~erd~s~------qr~~qk~ie~aPa~~l~~e~~~~l~~-~a~~l 318 (1427)
| +..++||||++ |.|+|+.++.|+.. ++.+ ..+|... ..+...++.++|.+.++++..+++.+ .....
T Consensus 77 g~~~~~vvIEE~l~-G~E~S~~a~~dG~~-~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt 154 (194)
T PF01071_consen 77 GDAGSKVVIEEFLE-GEEVSLFALTDGKN-FVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPT 154 (194)
T ss_dssp CCCGSSEEEEE----SEEEEEEEEEESSE-EEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHH
T ss_pred CCCCCcEEEEeccC-CeEEEEEEEEcCCe-EEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHH
Confidence 5 57999999999 99999999999864 4433 2333221 22335678899999899988877776 45555
Q ss_pred HHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCC
Q psy15244 319 AKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQ 350 (1427)
Q Consensus 319 ~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ 350 (1427)
+++| .|+|+..+.++++++| +++||.|.|++
T Consensus 155 ~~~l~~eg~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 155 LKGLKKEGIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHHTT---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred HHHHHhcCCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 5544 7889999999999888 99999999997
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-16 Score=192.17 Aligned_cols=171 Identities=17% Similarity=0.246 Sum_probs=125.2
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+.++|||+|..+|.+.+++ ++.|||+.||.+++.|+... ++
T Consensus 425 l~y~l~p~v~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~----~e-------------------------------- 465 (596)
T PRK14042 425 LLYAMFPEIGRQFLEQRKN---NQLIPEPLLTQSSAPDNSVM----SE-------------------------------- 465 (596)
T ss_pred HHHHhCcHHHHHHHHHHhc---cccCCccccccccccCCCCc----eE--------------------------------
Confidence 7788999999999999877 56899999999987666321 01
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
..+ . ..|+++.|.+.. +. . ...+.|+|||++||+.+.+++.+...-. .....+++..+
T Consensus 466 ---~~v--~--~~Gk~~~Ikl~~-----~g------~-~~~G~r~v~fevng~~r~v~v~d~~~~~---~~~~~~~a~~~ 523 (596)
T PRK14042 466 ---FDI--I--LHGESYHVKVAG-----YG------M-IEHGQQSCFLWVDGVPEEVVVQHSELHD---KIERSSVNNKI 523 (596)
T ss_pred ---EEE--E--ECCEEEEEEEec-----cc------c-ccCCceEEEEEEcCccceeecccccccc---cccccccCCCC
Confidence 000 0 239999998862 22 1 2369999999999999999998764211 11122333344
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
..-.|.++|.|...+|.+++||.+ .. |..-+.+|-. . ....|.||.
T Consensus 524 ~~~~v~apm~G~V~~~~V~~Gd~V-----------~~-Gq~L~~iEam---------------------K-me~eV~AP~ 569 (596)
T PRK14042 524 GPGDITVAIPGSIIAIHVSAGDEV-----------KA-GQAVLVIEAM---------------------K-METEIKAPA 569 (596)
T ss_pred CCCeEecCcceEEEEEEeCCCCEe-----------CC-CCEEEEEEec---------------------c-eeeEEecCC
Confidence 455799999999999999999997 23 4333333311 1 346899999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
.|+|.+++|++||.|+.||+|+.||.
T Consensus 570 ~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 570 NGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 99999999999999999999999974
|
|
| >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-18 Score=173.41 Aligned_cols=71 Identities=38% Similarity=0.582 Sum_probs=69.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+...|.|||+|++++++|++||+|++||+||+|||||||++|.||.+|+|++|+|++||.|+.||+|+.|+
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-17 Score=174.98 Aligned_cols=158 Identities=25% Similarity=0.417 Sum_probs=90.2
Q ss_pred hCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHcc
Q psy15244 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248 (1427)
Q Consensus 169 ~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~f 248 (1427)
|.||.++.+.++++|||+|... ..... ....+|+|+||.+|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 6799999999999999999322 11111 12378999999999999999999999988765542
Q ss_pred CCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccc--ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-CCC
Q psy15244 249 GKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM--QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-GYS 325 (1427)
Q Consensus 249 g~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~--qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-g~~ 325 (1427)
..++|+||+ |.++++.++.++.+..+..+.|...- ..++...+...|.. .....++.+.+.++++++ |+.
T Consensus 63 ---~~i~Qe~i~-G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~i~~~l~gl~ 135 (161)
T PF02655_consen 63 ---LRIVQEFIE-GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKEEIIELARRIAEALPGLR 135 (161)
T ss_dssp -----EEEE----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT--
T ss_pred ---ceEEeeeeC-CEEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC---CchHHHHHHHHHHHHHHcCCCe
Confidence 239999999 99999999998754433322222111 11234556666762 334789999999999999 999
Q ss_pred CeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 326 NAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 326 G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
|...|||++++ +++|+||||||++++
T Consensus 136 G~~giD~I~~~-~~~~viEINPR~t~S 161 (161)
T PF02655_consen 136 GYVGIDFILDD-GGPYVIEINPRFTGS 161 (161)
T ss_dssp EEEEEEEEESS--SEEEEEEESS--GG
T ss_pred eeEeEEEEEeC-CcEEEEEEcCCCCCC
Confidence 99999999987 669999999999863
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=182.24 Aligned_cols=164 Identities=21% Similarity=0.291 Sum_probs=127.4
Q ss_pred cccccChhhHHHHHhHhhhcCCCC--CCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVD--KLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGP 1202 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~--~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1202 (1427)
+.++|||+|..+|.+.+++||+++ .+||+.||.+++.++|+. +.
T Consensus 426 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~--------------------------------- 471 (592)
T PRK09282 426 LTYALFPQIAKKFLEEREAGELKPEPEPKEAAAAGAEGIPTEFK-VE--------------------------------- 471 (592)
T ss_pred HHHHhCcHHHHHHHHHHhccCCcccccCCccccccCCCCCeEEE-EE---------------------------------
Confidence 778899999999999999999998 999999999999888875 21
Q ss_pred CCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcc
Q psy15244 1203 VDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRL 1282 (1427)
Q Consensus 1203 ~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~ 1282 (1427)
++ |+++.|.+. .+. ..+ .|++||++||+.+.+++.+...-.... +..
T Consensus 472 ------------i~-Gk~~~i~~~-----~~g------~~~---~r~~~~~~ng~~~~v~v~d~~~~~~~~------~~~ 518 (592)
T PRK09282 472 ------------VD-GEKYEVKIE-----GVK------AEG---KRPFYLRVDGMPEEVVVEPLKEIVVGG------RPR 518 (592)
T ss_pred ------------EC-CEEEEEEEe-----ecc------CCC---cceEEEEecCceeeeeccCcccccccc------cCC
Confidence 12 888999775 222 111 799999999999999998874322110 233
Q ss_pred cccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceec
Q psy15244 1283 KSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGA 1362 (1427)
Q Consensus 1283 ~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~A 1362 (1427)
.+....|.+++.|+..+|.+++|+.+ .. |..-..++.. .....|.|
T Consensus 519 ~~~~~~V~Ap~~G~v~~~~V~~Gd~V-----------~~-Gq~L~~ieam----------------------Kme~~V~A 564 (592)
T PRK09282 519 ASAPGAVTSPMPGTVVKVKVKEGDKV-----------KA-GDTVLVLEAM----------------------KMENEIQA 564 (592)
T ss_pred CCCCceEeCCCcEEEEEEEeCCCCEE-----------CC-CCEEEEEecc----------------------ccceEEEc
Confidence 45667899999999999999999997 22 3322222211 12467999
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
|.+|+|.++.|++||.|..||+|+.|+
T Consensus 565 p~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 565 PVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 999999999999999999999999986
|
|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-16 Score=179.97 Aligned_cols=284 Identities=23% Similarity=0.306 Sum_probs=186.9
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceE-EEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCccccc-HH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQA-FLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSER-ED 146 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~-~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~-~~ 146 (1427)
..+..+++++.|++...++...-........+-.. ..+.. .....| ....-.........|++++-.+..... ..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~ 95 (318)
T COG0189 19 TFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGE--VIGLHY-ELIEEEDLSLLDELDVIIMRKDPPFDFATR 95 (318)
T ss_pred HHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhh--cccccc-ccccccccchhccCCEEEEecCCchhhHHH
Confidence 56788999999999776654432211111111000 00000 000000 000111122334678898875533233 46
Q ss_pred HHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHH-hcCCcEEEeecCCCCCcCeE
Q psy15244 147 FAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCD-EVEFPVILKAAFGGGGRGMR 225 (1427)
Q Consensus 147 ~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~-~iGyPvVVKP~~GgGGrGV~ 225 (1427)
+++.+|..|.+++ ++++++..|+||..+-+++.++|+|+|++. ...+.+++..+++ ..|||+|+||.+|++|+||.
T Consensus 96 ~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~--i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~ 172 (318)
T COG0189 96 FLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTL--ITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF 172 (318)
T ss_pred HHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEE--EEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceE
Confidence 7889999999877 899999999999999999999999999986 6777766666655 55899999999999999999
Q ss_pred EecCHH-HHHHHHHHHHHHHHHccCCCcEEEEeeccCCc-eEEEEEEecccccEEEee--eecc--ccccccceEEEEcc
Q psy15244 226 MVANKD-AIEENFKRAQSEALASFGKDDMLVEKYIDRPR-HIEVQILGDKYGDVVHLY--ERDC--SMQRRYQKVIQIAP 299 (1427)
Q Consensus 226 iV~s~e-eL~~a~~~a~~ea~~~fg~~~vlVEeyIeggr-eieVqvl~Dg~G~vv~l~--erd~--s~qr~~qk~ie~aP 299 (1427)
+|++.+ ++.+.++..... +...+|+|+||+.+. .+-.-+++| +.++..+ .|-+ .--|.+...+..+.
T Consensus 173 ~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e 245 (318)
T COG0189 173 LVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALARIPASGDFRSNLARGGRAE 245 (318)
T ss_pred EecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC--CEEeEEeeeccccCCCCceeecccccccc
Confidence 999999 888877665432 234699999999775 444545555 3555543 2211 01111111222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 300 AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 300 a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
...++ +++.+.|.+++++||. +...||++.+.+| +|++|||..+.+-+. ++..+|+|....+++..
T Consensus 246 ~~~l~----~e~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 246 PCELT----EEEEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred ccCCC----HHHHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 22455 5677899999999987 5788999999777 999999996655443 45568898888777654
|
|
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-16 Score=169.45 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=201.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE--EEe
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA--IHP 136 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa--I~p 136 (1427)
-|+|+|+....+.++|++.+.-+.+.++..+. .....++++.+....+.+. +-..++.+.++|.+++-.. +++
T Consensus 5 gviilGgahgtlalARSfg~~~vpv~~ls~d~-plPt~Sr~vr~t~~w~gph----d~gaiafLrd~Aekhglkg~LLva 79 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEEFVPVLALSADG-PLPTYSRIVRVTTHWNGPH----DEGAIAFLRDFAEKHGLKGYLLVA 79 (415)
T ss_pred ceEEEcccchhHHHHHhhccccceEEEEecCC-CCcchhhhheeeeccCCCC----cccHHHHHHHHHhhcCcCceEEEe
Confidence 57899988778889999999998877764433 3344677777766654111 1234788999999987542 233
Q ss_pred -CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 137 -GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 137 -g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|-|..--.....+.+.+. ..++-|+...++.+.+|-.+.+.|.+.|+|+|..+ .++|..+ ..+.++.||+|+||
T Consensus 80 ~GDgev~lvSq~reeLSa~-f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty--~v~S~~d--~~~~el~FPvILKP 154 (415)
T COG3919 80 CGDGEVLLVSQYREELSAF-FEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTY--LVNSEID--TLVDELTFPVILKP 154 (415)
T ss_pred cCCceeeehHhhHHHHHHH-hcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceE--Eecchhh--hhhhheeeeEEecC
Confidence 333211111222222221 23346899999999999999999999999999987 5676544 45678999999999
Q ss_pred cCCCC-----CcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCce--EEEEEEecccccEEEeeeeccccc
Q psy15244 216 AFGGG-----GRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRH--IEVQILGDKYGDVVHLYERDCSMQ 288 (1427)
Q Consensus 216 ~~GgG-----GrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggre--ieVqvl~Dg~G~vv~l~erd~s~q 288 (1427)
-.|+| -.....+.+.+|+..++.++..+ .|.++++||+||+||.| ++...+.|+ |+.+.. |.-.
T Consensus 155 ~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qfsyaAlw~~-g~pvae----ftar 225 (415)
T COG3919 155 GMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQFSYAALWDK-GHPVAE----FTAR 225 (415)
T ss_pred CCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccchHHHHHhC-CCchhh----hhcc
Confidence 98884 34556778899999999888765 46789999999998865 444455665 444432 3322
Q ss_pred cccceEEEE---ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCH
Q psy15244 289 RRYQKVIQI---APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDV 364 (1427)
Q Consensus 289 r~~qk~ie~---aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDL 364 (1427)
|-.|.-... +-...+.+ .+++.++++++++.+++.|...|||++|+ ||.+.++|||||++....+.. +.|+||
T Consensus 226 r~rqyPvdfgytst~vevvD--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~t-aaG~nL 302 (415)
T COG3919 226 RLRQYPVDFGYTSTVVEVVD--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLVT-AAGYNL 302 (415)
T ss_pred hhhcCCcccccccEEEEecC--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeEEe-cccccc
Confidence 222211000 00001112 37889999999999999999999999997 899999999999987543332 367777
Q ss_pred HHHHHHHHcCC
Q psy15244 365 VQSQIKIAQGK 375 (1427)
Q Consensus 365 v~~~i~iA~G~ 375 (1427)
-....+...+.
T Consensus 303 g~~Lwa~~~~~ 313 (415)
T COG3919 303 GRYLWADRINN 313 (415)
T ss_pred cceEEeeecCC
Confidence 66555544443
|
|
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=169.67 Aligned_cols=182 Identities=27% Similarity=0.497 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHcc
Q psy15244 170 GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248 (1427)
Q Consensus 170 ~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~f 248 (1427)
.||..+.++|+++|||+|++. .+.+.+++.++++++ ++|+|+||..|++|+||.++++.+++...++.....
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~--~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~----- 74 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETR--VTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL----- 74 (190)
T ss_dssp HBHHHHHHHHHHTT-----EE--EESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH----------
T ss_pred CCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc-----
Confidence 599999999999999999986 678999999999999 899999999999999999999999999887754321
Q ss_pred CCCcEEEEeeccCC--ceEEEEEEecccccEEEeeeeccc---cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy15244 249 GKDDMLVEKYIDRP--RHIEVQILGDKYGDVVHLYERDCS---MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG 323 (1427)
Q Consensus 249 g~~~vlVEeyIegg--reieVqvl~Dg~G~vv~l~erd~s---~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg 323 (1427)
+..+++|+||+.. +++.|.++++ +++..+.|.-. ...+...-....|. .++ +++.+.|.++++++|
T Consensus 75 -~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r~~~~~d~r~n~~~g~~~~~~-~l~----~e~~~~a~~~~~~lg 145 (190)
T PF08443_consen 75 -ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRRSSPEGDFRTNLSRGGKVEPY-DLP----EEIKELALKAARALG 145 (190)
T ss_dssp -TTT-EEEE----SS---EEEEEETT---EEEEEEE------------------EE---------HHHHHHHHHHHHHTT
T ss_pred -cCcceEeccccCCCCcEEEEEEECC---EEEEEEEEecCcccchhhhccCceEEEe-cCC----HHHHHHHHHHHHHhC
Confidence 4688999999965 4899888865 46655544311 11111111112233 234 567888999999999
Q ss_pred CCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHH
Q psy15244 324 YSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 324 ~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~i 371 (1427)
+. .+.||++.++ +++||+|+|+.++ ...++..+|+|+.+..+..
T Consensus 146 l~-~~giDi~~~~-~~~~v~EvN~~~~--~~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 146 LD-FAGIDILDTN-DGPYVLEVNPNPG--FRGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp -S-EEEEEEEEET-TEEEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred CC-EEEEEEEecC-CCeEEEEecCCch--HhHHHHHHCcCHHHHHHhh
Confidence 85 7889966554 5699999999887 4467788999999987753
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=149.61 Aligned_cols=70 Identities=39% Similarity=0.586 Sum_probs=68.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.|||+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.+++++.||.|+.|++|++|
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 5677999999999999999999999999999999999999999999999999999999999999999987
|
|
| >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-15 Score=153.51 Aligned_cols=70 Identities=40% Similarity=0.617 Sum_probs=68.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.|||+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++.|+.|..|++|++|
T Consensus 83 ~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 5678999999999999999999999999999999999999999999999999999999999999999987
|
|
| >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-15 Score=135.28 Aligned_cols=69 Identities=30% Similarity=0.530 Sum_probs=66.8
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.|||+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999999999885
|
|
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-13 Score=159.74 Aligned_cols=278 Identities=14% Similarity=0.141 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCC-CcccCCCCHHHHHHHH-------HhcCCCEEEe
Q psy15244 65 RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGM-PPVAAYLNIPEIICIA-------KNNNVDAIHP 136 (1427)
Q Consensus 65 rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~-~~~~~yldi~~Ii~ia-------~~~~vDaI~p 136 (1427)
..-...+++.+|+++|+++..+....-........|.-...+..+. .....+ ....+.. .-..+|+|++
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~V~~ 85 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENF---LSFLKKAEFKKERLPLAGFDVIFL 85 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccch---hhHhhccccccccCchhhCCEEEE
Confidence 3445788999999999998877544322111122222222221100 000000 0111111 1134899998
Q ss_pred C--CCcccccHHHH--------HHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHh
Q psy15244 137 G--YGFLSEREDFA--------KAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDE 206 (1427)
Q Consensus 137 g--~gflsE~~~~a--------~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~ 206 (1427)
- +.+..+...++ ..++..|++++ +++++++.+.||..+.++++ +++|++. ...+.+++.+++++
T Consensus 86 R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~--v~~~~~~~~~~~~~ 159 (338)
T PRK12458 86 RANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTH--ISRNKEYIREFLEE 159 (338)
T ss_pred eCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEE--EeCCHHHHHHHHHH
Confidence 5 33322222222 23356788766 99999999999999977665 6777765 56788899999999
Q ss_pred cCCc-EEEeecCCCCCcCeEEecCHHH--HHHHHHHHHHHHHHccCCCcEEEEeeccCC--ceEEEEEEecccccEE---
Q psy15244 207 VEFP-VILKAAFGGGGRGMRMVANKDA--IEENFKRAQSEALASFGKDDMLVEKYIDRP--RHIEVQILGDKYGDVV--- 278 (1427)
Q Consensus 207 iGyP-vVVKP~~GgGGrGV~iV~s~ee--L~~a~~~a~~ea~~~fg~~~vlVEeyIegg--reieVqvl~Dg~G~vv--- 278 (1427)
+++| +|+||..|+||+||+++++.++ +...++.... ...+++|+||++. .++.+.++. |+++
T Consensus 160 ~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv~---g~~v~~~ 229 (338)
T PRK12458 160 SPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLLN---GEPLERD 229 (338)
T ss_pred cCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEEC---CEEEeec
Confidence 9775 9999999999999999987664 4444443211 3589999999954 445555432 4566
Q ss_pred ---Eeeeecccc--ccccceE-EEEccCCCCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEEEEcCCCcEEEEeeCCCC
Q psy15244 279 ---HLYERDCSM--QRRYQKV-IQIAPAQDMSVSVRDAITETSVRLAKSL---GYSNAGTVEFLLDKDDNFYFIEVNPRL 349 (1427)
Q Consensus 279 ---~l~erd~s~--qr~~qk~-ie~aPa~~l~~e~~~~l~~~a~~l~~al---g~~G~~~VEflvd~dG~~yfIEINpRl 349 (1427)
+...|...- -|.+... ....+. .+++ ++.+.|.+++..+ |+. .+.||++ | .+++|||++-
T Consensus 230 g~~~a~~R~~~~~d~RsN~~~Gg~~~~~-~l~~----~~~~ia~~~~~~l~~~GL~-~~gVDli----~-~~l~EIN~~s 298 (338)
T PRK12458 230 GHYAAMRRVPAGGDVRSNVHAGGSVVKH-TLTK----EELELCEAIRPKLVRDGLF-FVGLDIV----G-DKLVEVNVFS 298 (338)
T ss_pred cceeEEEEecCCCCeeecccCCCcccCc-CCCH----HHHHHHHHHHHHHhhcCCe-EEeEEEE----C-CEEEEEeCCC
Confidence 554442211 0111111 112222 3554 4455555655554 553 6779997 2 3799999998
Q ss_pred CCchhHHHHHhCCCHHHHHHHHH
Q psy15244 350 QVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 350 ~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
+++.+-.+..+|+|+....+...
T Consensus 299 p~g~~~~~~~~g~d~a~~i~~~i 321 (338)
T PRK12458 299 PGGLTRINKLNKIDFVEDIIEAL 321 (338)
T ss_pred cchHHHHHHHhCCCHHHHHHHHH
Confidence 87777777889999999988865
|
|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-14 Score=151.07 Aligned_cols=247 Identities=19% Similarity=0.219 Sum_probs=166.9
Q ss_pred HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC-CCcccccHHHHH
Q psy15244 71 RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG-YGFLSEREDFAK 149 (1427)
Q Consensus 71 riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg-~gflsE~~~~a~ 149 (1427)
.++++.++.|+.+.....-.|.. .+-.+..- + . ...+.+-+.+++.++-.++.- .++ ....+.+
T Consensus 29 sll~~F~~~~ve~y~~~~f~~~~------ig~~f~s~----~-~--~~~~~~ek~le~~Da~LvIAPEdd~--lLy~Ltr 93 (307)
T COG1821 29 SLLRAFAKSGVEVYETLTFADPS------IGVRFKST----A-D--DVLRDEEKALEKADATLVIAPEDDG--LLYSLTR 93 (307)
T ss_pred HHHHHHHhcCceEEEeecccccc------cceeeecc----h-h--HHHHHHHHHHhcCCeeEEEecCcCC--hHHHHHH
Confidence 36788888997655443322221 11111100 0 0 113344445554333334322 233 3346777
Q ss_pred HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecC
Q psy15244 150 AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVAN 229 (1427)
Q Consensus 150 ~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s 229 (1427)
..++. ...+|+|+++++.+.||..+...++.+ +++|+.+ . ....+--.|+||++|+||.|+.+..+
T Consensus 94 i~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~--e----------~~~~~~k~ViKp~dgCgge~i~~~~~ 159 (307)
T COG1821 94 IYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTR--E----------WAEEPKKYVIKPADGCGGEGILFGRD 159 (307)
T ss_pred HHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcc--c----------cccCCceEEecccccCCcceeeccCC
Confidence 77777 666899999999999999999999999 9999875 1 11233458999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccc-----cceEE-EEccCCCC
Q psy15244 230 KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR-----YQKVI-QIAPAQDM 303 (1427)
Q Consensus 230 ~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~-----~qk~i-e~aPa~~l 303 (1427)
..++ .++|+||+ |.|.||. +.+|. .+..| |+.|. ..+.. ...++ ..
T Consensus 160 ~pd~-------------------~i~qEfIe-G~~lSVS-L~~GE-kv~pL-----svNrQfi~~~~~~~~y~gg~~-pi 211 (307)
T COG1821 160 FPDI-------------------EIAQEFIE-GEHLSVS-LSVGE-KVLPL-----SVNRQFIIFAGSELVYNGGRT-PI 211 (307)
T ss_pred Ccch-------------------hhHHHhcC-CcceEEE-EecCC-ccccc-----eechhhhhhccceeeeccCcC-CC
Confidence 6653 47889999 9999999 55543 23333 23222 12222 23344 36
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCC
Q psy15244 304 SVSVRDAITETSVRLAKSLG-YSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376 (1427)
Q Consensus 304 ~~e~~~~l~~~a~~l~~alg-~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~ 376 (1427)
+.+..+++.+.|+++++.++ +.|...|++++. ++||+||||||+.-..--...+++-++.+..+.-..|.-
T Consensus 212 ~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls--D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~ 283 (307)
T COG1821 212 DHELKREAFEEAIRAVECIPGLNGYVGVDLVLS--DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKV 283 (307)
T ss_pred CcHHHHHHHHHHHHHHHhhccccceeeEEEEec--CCcEEEEecCCCCcceeeeeccccHHHHHHHhcCccccc
Confidence 77999999999999999996 889999999997 459999999999865333445577778887777666664
|
|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=168.83 Aligned_cols=76 Identities=41% Similarity=0.670 Sum_probs=71.6
Q ss_pred cCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1351 KADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1351 ~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+......+.+.|||||+|++|.|++|++|.+||+|+++||||||+.|+||.+|+|+++.+++|++|..|++|++++
T Consensus 569 ~~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 569 KVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred cccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 3444567889999999999999999999999999999999999999999999999999999999999999999986
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=178.34 Aligned_cols=240 Identities=23% Similarity=0.313 Sum_probs=169.6
Q ss_pred HHHHHHHHHhcCCCEEEeCCCcccccH--HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCC
Q psy15244 119 IPEIICIAKNNNVDAIHPGYGFLSERE--DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTD 196 (1427)
Q Consensus 119 i~~Ii~ia~~~~vDaI~pg~gflsE~~--~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s 196 (1427)
-..|++.|.+.++....-..|.+-... .-.+.+... .+--.+..++..+.||..++++|+++|||+|++. .+.+
T Consensus 161 t~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~~--~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~--~~~s 236 (864)
T TIGR02068 161 TAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQAT--ETDRTSAIAVEIACDKDLTKEILSDAGVPVPEGT--VVQS 236 (864)
T ss_pred HHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEee--cCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EECC
Confidence 467777777777765543322111100 000111111 1113578899999999999999999999999986 6889
Q ss_pred HHHHHHHHHhcCCcEEEeecCCCCCcCeEE-ecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 197 VDKVKEFCDEVEFPVILKAAFGGGGRGMRM-VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 197 ~eea~~~a~~iGyPvVVKP~~GgGGrGV~i-V~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
.+++.++++++|||+||||..|++|+||.+ +++.+++.++++.+.+. +..++||+||+ |+++.+.++. |
T Consensus 237 ~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~-G~e~rvlVv~---~ 306 (864)
T TIGR02068 237 AEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFIT-GRDHRLLVVG---G 306 (864)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEecc-CCEEEEEEEC---C
Confidence 999999999999999999999999999998 99999999999887543 36899999999 7999987753 3
Q ss_pred cEEEeeeecccc-------------------ccc----------------------------------cceEEE------
Q psy15244 276 DVVHLYERDCSM-------------------QRR----------------------------------YQKVIQ------ 296 (1427)
Q Consensus 276 ~vv~l~erd~s~-------------------qr~----------------------------------~qk~ie------ 296 (1427)
+++...+|.... .|| .+.+.-
T Consensus 307 ~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nl 386 (864)
T TIGR02068 307 KVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANL 386 (864)
T ss_pred EEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccc
Confidence 577665554311 011 000000
Q ss_pred --EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC------CCcEEEEeeCCCCCCc-hhHHHHHhCCCHHHH
Q psy15244 297 --IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK------DDNFYFIEVNPRLQVE-HTLSEEITGIDVVQS 367 (1427)
Q Consensus 297 --~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~------dG~~yfIEINpRl~ge-~~vte~~tGiDLv~~ 367 (1427)
..-+...+++..++..+.|+++++++|+. .+.||++..+ .....+||+|+.++-. |..-..-.+.++...
T Consensus 387 s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl~-i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~ 465 (864)
T TIGR02068 387 STGGVAIDRTDEIHPENAATAVRAAKIIGLD-IAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARA 465 (864)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHH
Confidence 00111346677788999999999999997 6669998752 2236899999999854 444444457788888
Q ss_pred HHHHHc
Q psy15244 368 QIKIAQ 373 (1427)
Q Consensus 368 ~i~iA~ 373 (1427)
.+....
T Consensus 466 Il~~lf 471 (864)
T TIGR02068 466 IVDMLF 471 (864)
T ss_pred HHHHhc
Confidence 887664
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-14 Score=127.31 Aligned_cols=69 Identities=32% Similarity=0.513 Sum_probs=67.2
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++|.|||+|+|++|.|++||+|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=168.72 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=140.5
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEe---cCHHHHHHH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMV---ANKDAIEEN 236 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV---~s~eeL~~a 236 (1427)
.+..+...++||..+|++++++|||+|++. .+.+.+++.+.+..+ |||+||||..|++|+||.++ .+.+++.++
T Consensus 478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~--~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 478 DNYISPLIMENKVVTKKILAEAGFPVPAGD--EFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CHHHHHHHhhCHHHHHHHHHHCCcCCCCEE--EEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence 445567788999999999999999999986 678888887777764 89999999999999999986 468888888
Q ss_pred HHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccc---------c----------ccc---cce-
Q psy15244 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS---------M----------QRR---YQK- 293 (1427)
Q Consensus 237 ~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s---------~----------qr~---~qk- 293 (1427)
++.+.+. +..++|||||+ |+|+.|.++. |+++....|... + .+| |..
T Consensus 556 ~~~a~~~------~~~vlVEEfI~-G~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~ 625 (752)
T PRK02471 556 LEIAFRE------DSSVLVEEFIV-GTEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTP 625 (752)
T ss_pred HHHHHhc------CCcEEEEeccc-CCEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccc
Confidence 8776432 46799999999 8999998873 356655444211 0 000 000
Q ss_pred -------------------EEEEcc-------------------CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Q psy15244 294 -------------------VIQIAP-------------------AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335 (1427)
Q Consensus 294 -------------------~ie~aP-------------------a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd 335 (1427)
..+..| +..+++.+.+...+.|+++++++|+. .+.||+++.
T Consensus 626 l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~ 704 (752)
T PRK02471 626 LEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIP 704 (752)
T ss_pred ccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeC
Confidence 000111 11456778899999999999999987 566999986
Q ss_pred C-C-----C--cEEEEeeCCCCCCc-hhHHHHHhCCCHHHHHHH
Q psy15244 336 K-D-----D--NFYFIEVNPRLQVE-HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 336 ~-d-----G--~~yfIEINpRl~ge-~~vte~~tGiDLv~~~i~ 370 (1427)
+ . . +..+||+|.+++-. |..-..-...|+.+..+.
T Consensus 705 di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d 748 (752)
T PRK02471 705 DLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILD 748 (752)
T ss_pred CCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHH
Confidence 4 1 2 57899999999854 432222233444444443
|
|
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=166.04 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=142.8
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecC---HHHHHHH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVAN---KDAIEEN 236 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s---~eeL~~a 236 (1427)
.+..++..|.||..+|++++++|||||++. .+.+.+++.+....+ +||+||||..|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~--~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGD--EFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 467788999999999999999999999986 678887777766666 7999999999999999999876 7888888
Q ss_pred HHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecc---------cc----------ccc---cc--
Q psy15244 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDC---------SM----------QRR---YQ-- 292 (1427)
Q Consensus 237 ~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~---------s~----------qr~---~q-- 292 (1427)
++.+.+. +..++||+||+ |+|+.|.|+.+ +++....|.- ++ .+| |.
T Consensus 543 l~~A~~~------~~~VLVEefI~-G~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLP-GTEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEeccc-CCEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8765432 46799999999 89999988864 4555433320 00 000 00
Q ss_pred --e---------------EEEEcc-------------------CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Q psy15244 293 --K---------------VIQIAP-------------------AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK 336 (1427)
Q Consensus 293 --k---------------~ie~aP-------------------a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~ 336 (1427)
+ ..+..| +..+++++.+...+.|+++++++|+. ++.||+++.+
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 0 001111 11456788899999999999999997 8889999863
Q ss_pred C--------CcEEEEeeCCCCCCc-hhHHHHHhCCCHHHHHHH
Q psy15244 337 D--------DNFYFIEVNPRLQVE-HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 337 d--------G~~yfIEINpRl~ge-~~vte~~tGiDLv~~~i~ 370 (1427)
- ..+.+||+|.+++-. |..-..-.+-|+....+.
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild 734 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIK 734 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHH
Confidence 1 226799999999954 433333334455544443
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-12 Score=147.10 Aligned_cols=275 Identities=14% Similarity=0.151 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCccCccccccceE-EEcCCCCCcccCCCCHH--HHHHHHHhcCCCEEEeCCC--ccc
Q psy15244 68 VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQA-FLVGKGMPPVAAYLNIP--EIICIAKNNNVDAIHPGYG--FLS 142 (1427)
Q Consensus 68 ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~-~~i~~~~~~~~~yldi~--~Ii~ia~~~~vDaI~pg~g--fls 142 (1427)
...+++.+++++|++++.+....-......-.+... +.+..+ ...+.... ..+. -...|+|++-.+ +..
T Consensus 19 st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~---l~~~D~v~~R~~~~~~~ 92 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPN---KQDWYTLGEKVRLS---LGELDAVLMRKDPPFDM 92 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccC---CcceeecCcccccc---cccCCEEEEeCCCCCCh
Confidence 467899999999999887754432211111112111 222111 01110000 1111 124799987632 221
Q ss_pred c---cHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC
Q psy15244 143 E---REDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219 (1427)
Q Consensus 143 E---~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg 219 (1427)
+ ...+.+.++..|++++ +++++++.+.||..+.+++. ++|++. ...+.+++.++++++| |+|+||..|+
T Consensus 93 ~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~--v~~~~~~~~~~~~~~g-~vVvKPl~G~ 164 (312)
T TIGR01380 93 EYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTL--VTRDKAEIRAFLAEHG-DIVLKPLDGM 164 (312)
T ss_pred hhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEE--EeCCHHHHHHHHHHcC-CEEEEECCCC
Confidence 1 1367888889999876 88999999999999887653 788875 5678899999999998 9999999999
Q ss_pred CCcCeEEecCHH-HHHHHHHHHHHHHHHccCCCcEEEEeeccC--CceEEEEEEecccccEEE-eeeecccc--ccccce
Q psy15244 220 GGRGMRMVANKD-AIEENFKRAQSEALASFGKDDMLVEKYIDR--PRHIEVQILGDKYGDVVH-LYERDCSM--QRRYQK 293 (1427)
Q Consensus 220 GGrGV~iV~s~e-eL~~a~~~a~~ea~~~fg~~~vlVEeyIeg--greieVqvl~Dg~G~vv~-l~erd~s~--qr~~qk 293 (1427)
||+|+.++.+.+ ++...++.. ...+...+++|+||+. +.++.+.++. |+++. ...|...- -|.+..
T Consensus 165 ~G~gv~~v~~~~~~~~~~~~~~-----~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N~~ 236 (312)
T TIGR01380 165 GGEGIFRLDPGDPNFNSILETM-----TQRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGNLA 236 (312)
T ss_pred CCceEEEEcCCCccHHHHHHHH-----HhccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCcccccc
Confidence 999999997633 343333222 1223468999999984 3688887764 35553 44442111 111111
Q ss_pred E-EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 294 V-IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 294 ~-ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
. ....|. .++++. .++...+...++++|+. .+.||++ | .||+|||+-=+.+..-.+.++|+|+....+...
T Consensus 237 ~Gg~~~~~-~l~~e~-~~ia~~~~~~~~~~gl~-~agVDii----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 237 VGGRGEAT-ELSERD-REICADVAPELKRRGLL-FVGIDVI----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred CCceeecc-CCCHHH-HHHHHHHHHHHHhcCCc-EEEEEEe----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 1 223333 356543 34444444455666764 6779998 3 579999987444555567779999999888754
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >PRK06748 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=126.36 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=64.5
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcC-CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM-KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam-Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|.|||||+|++|+|++||.|++||+|++||+| |+..+|.||.+|+|.++++++||.|..|++|+.|+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 589999999999999999999999999999997 45669999999999999999999999999999986
|
|
| >PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-14 Score=128.47 Aligned_cols=67 Identities=39% Similarity=0.615 Sum_probs=64.4
Q ss_pred ceecCCCeEEEE------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1359 EIGAPMPGNIIE------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1359 ~V~APm~G~v~~------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+|.+|++|...+ |+|++||.|++||+|++||+|||+++|.||.+|+|+++++++|+.|..|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 689999998776 9999999999999999999999999999999999999999999999999999986
|
Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A .... |
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=145.60 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCccCccccccceE-EEcCCCCCcccCCCCHH--HHHHHHHhcCCCEEEeCCC--ccc
Q psy15244 68 VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQA-FLVGKGMPPVAAYLNIP--EIICIAKNNNVDAIHPGYG--FLS 142 (1427)
Q Consensus 68 ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~-~~i~~~~~~~~~yldi~--~Ii~ia~~~~vDaI~pg~g--fls 142 (1427)
...+++++++++|++++.+....-......-.+... +.+. . ....|.... ....+ ...|+|++-.+ +-.
T Consensus 20 st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~-~--~~~~w~~~~~~~~~~l---~~~D~v~~R~~~~~~~ 93 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVR-D--DKGDWYELGEEQRLPL---ADFDVILMRKDPPFDM 93 (316)
T ss_pred hHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEec-c--CCccceeccccccCcc---ccCCEEEEcCCCCCCh
Confidence 357899999999999887754322111111111000 1111 0 011111100 00111 23799997632 211
Q ss_pred c---cHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC
Q psy15244 143 E---REDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219 (1427)
Q Consensus 143 E---~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg 219 (1427)
+ ...+.+.++..|++++ +++++++.+.||..+.+++. ++|++. ...+.+++.++++++| |+|+||..|+
T Consensus 94 ~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~--~~~~~~~~~~~~~~~~-~vVlKP~~G~ 165 (316)
T PRK05246 94 EYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTL--VTRDKAEIRAFRAEHG-DIILKPLDGM 165 (316)
T ss_pred HHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEE--EeCCHHHHHHHHHHCC-CEEEEECCCC
Confidence 1 1246777787899876 88999999999999988765 688865 5778899999999998 9999999999
Q ss_pred CCcCeEEecC-HHHHHHHHHHHHHHHHHccCCCcEEEEeeccC--CceEEEEEEecccccEEE-eeeecccc--ccccc-
Q psy15244 220 GGRGMRMVAN-KDAIEENFKRAQSEALASFGKDDMLVEKYIDR--PRHIEVQILGDKYGDVVH-LYERDCSM--QRRYQ- 292 (1427)
Q Consensus 220 GGrGV~iV~s-~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg--greieVqvl~Dg~G~vv~-l~erd~s~--qr~~q- 292 (1427)
+|+|+.++.. ..++...++... ..+...+++|+||+. +.++.|.++ + |++++ ...|-..- -+.+.
T Consensus 166 ~G~gV~~i~~~~~~~~~~~~~l~-----~~~~~~~lvQ~~I~~~~~~D~Rv~vv-~--g~vv~~a~~R~~~~~~~rtN~~ 237 (316)
T PRK05246 166 GGAGIFRVKADDPNLGSILETLT-----EHGREPVMAQRYLPEIKEGDKRILLV-D--GEPVGYALARIPAGGETRGNLA 237 (316)
T ss_pred CccceEEEeCCCccHHHHHHHHH-----HccCCeEEEEeccccCCCCCEEEEEE-C--CEEhhheeEecCCCCCcccCcc
Confidence 9999999954 444443333321 234568999999986 367887776 3 46776 55552111 11111
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
.-....|. .++++. .+++..+.+.++.+|+. .+.||++ | .|++|||..-+++..-.+.+||+|+.+..++..
T Consensus 238 ~Gg~~~~~-~l~~~~-~~ia~~~~~~l~~~gl~-~~GVDli----~-~~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~ 309 (316)
T PRK05246 238 AGGRGEAT-PLTERD-REICAAIGPELKERGLI-FVGIDVI----G-DYLTEINVTSPTGIREIERLTGVDIAGMLWDAI 309 (316)
T ss_pred CCceEecc-CCCHHH-HHHHHHHHHHHHHhCCC-EEEEEEe----C-CEEEEEeCCCchHHHHHHHHhCCCHHHHHHHHH
Confidence 11223344 355443 34444444444666653 6789998 2 279999987455588888999999999988765
Q ss_pred c
Q psy15244 373 Q 373 (1427)
Q Consensus 373 ~ 373 (1427)
.
T Consensus 310 ~ 310 (316)
T PRK05246 310 E 310 (316)
T ss_pred H
Confidence 4
|
|
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=144.94 Aligned_cols=178 Identities=13% Similarity=0.247 Sum_probs=130.1
Q ss_pred HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCC-------CCCCCCccccCCCHHHHH---HHHHhcCCcEEEeecCC-
Q psy15244 150 AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKAD-------VPIIPGTTEPVTDVDKVK---EFCDEVEFPVILKAAFG- 218 (1427)
Q Consensus 150 ~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aG-------Vpvp~~~~~~v~s~eea~---~~a~~iGyPvVVKP~~G- 218 (1427)
..+..|++++ .++++++.+.||..+.+.+.++| ||+|++. .+.+.+.+. .....+|||+|+||..|
T Consensus 87 ~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~--v~~~~~~al~~~~~~~~l~~P~V~KPl~g~ 163 (328)
T PLN02941 87 REKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQL--VVYDDESSIPDAVALAGLKFPLVAKPLVAD 163 (328)
T ss_pred HHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEE--EEcCHHHHHHHHHHHhcCCCCEEEeecccC
Confidence 4455688877 88999999999999999999999 9999986 566765533 33468899999999999
Q ss_pred --CCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC-CceEEEEEEecccccEEEeeeecccccc-c-c-c
Q psy15244 219 --GGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDR-PRHIEVQILGDKYGDVVHLYERDCSMQR-R-Y-Q 292 (1427)
Q Consensus 219 --gGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg-greieVqvl~Dg~G~vv~l~erd~s~qr-~-~-q 292 (1427)
+.|++|.++.+.+.|... +.++++||||+. ++.+-|.+++|. +. ...| .|... + . .
T Consensus 164 Gss~gh~m~lv~~~~~L~~l-------------~~p~~lQEfVnh~g~d~RVfVvGd~---v~-~~~R-~S~~n~~~~~~ 225 (328)
T PLN02941 164 GSAKSHKMSLAYDQEGLSKL-------------EPPLVLQEFVNHGGVLFKVYVVGDY---VK-CVRR-FSLPDVSEEEL 225 (328)
T ss_pred CCccccceEEecCHHHHHhc-------------CCcEEEEEecCCCCEEEEEEEECCE---EE-EEEe-cCCcccccccc
Confidence 789999999999887751 247999999975 588999998875 32 2222 12210 0 0 0
Q ss_pred eEE------------------E----EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC--CcEEEEeeCCC
Q psy15244 293 KVI------------------Q----IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD--DNFYFIEVNPR 348 (1427)
Q Consensus 293 k~i------------------e----~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d--G~~yfIEINpR 348 (1427)
... . .-|. .......+++.+.|.++.++||.. .+.||++.+.+ +++++||||.-
T Consensus 226 n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~-~~~~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~~~~~~~~VidVN~f 303 (328)
T PLN02941 226 SSAEGVLPFPRVSNAAASADDADNGGLDPE-VAELPPRPFLEDLARELRRRLGLR-LFNFDMIREHGTGDRYYVIDINYF 303 (328)
T ss_pred cccccccccccccccccccccccccccccc-cccCCChHHHHHHHHHHHHHhCCc-eEEEEEEeecCCCCceEEEEecCC
Confidence 000 0 0000 011112356999999999999995 88899999863 46999999998
Q ss_pred CC
Q psy15244 349 LQ 350 (1427)
Q Consensus 349 l~ 350 (1427)
++
T Consensus 304 P~ 305 (328)
T PLN02941 304 PG 305 (328)
T ss_pred Cc
Confidence 87
|
|
| >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.8e-13 Score=139.43 Aligned_cols=70 Identities=31% Similarity=0.466 Sum_probs=67.1
Q ss_pred CCceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1357 AGEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|.|||+|++++ |+|++||.|++||+|++||+|||+++|.||.+|+|++++++.|+.|+.|++|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 35799999999997 79999999999999999999999999999999999999999999999999999885
|
The gene name is accB or fabE. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.7e-11 Score=148.86 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=99.9
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+.++|||+|..+|.+.+++ +.||.+++.+|+.... . .+
T Consensus 435 l~~~~~p~v~~~f~~~~~~---------~~~~~~~~~~~~~~~~---~--------------------------~~---- 472 (593)
T PRK14040 435 LTYALFPQIGLKFLENRHN---------PAAFEPVPQAEAAQPA---A--------------------------KA---- 472 (593)
T ss_pred HHHHhccHHHHHHHHhhcc---------cccccCCCcccccccc---c--------------------------cC----
Confidence 7788999999999888754 5788888877765410 0 00
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhc-cc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLR-LK 1283 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 1283 (1427)
...-..++.++++ |+.+.|++...+ .+ . .+.... ...+.....++. ..
T Consensus 473 ---------~e~g~~~~~~~vn-G~~~~V~v~~~~-~~----------------~--~~~~~~--~~~~~~~~~~~a~~~ 521 (593)
T PRK14040 473 ---------EPAGSETYTVEVE-GKAYVVKVSEGG-DI----------------S--QITPAA--PAAAPAAAAAAAPAA 521 (593)
T ss_pred ---------CCCCCeEEEEEEC-CEEEEEEECCCC-cc----------------c--cccccc--cccccccccccccCC
Confidence 0011246888998 999998833322 00 0 010000 000000011112 22
Q ss_pred ccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecC
Q psy15244 1284 SERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAP 1363 (1427)
Q Consensus 1284 s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~AP 1363 (1427)
+....|.++|.|+.++|.++.|+.+ .. |..-+.++.. . ....|.||
T Consensus 522 ~~~~~V~Ap~~G~I~~~~V~~Gd~V-----------~~-Gd~l~~iEam---------------------K-me~~I~Ap 567 (593)
T PRK14040 522 AAGEPVTAPLAGNIFKVIVTEGQTV-----------AE-GDVLLILEAM---------------------K-METEIRAA 567 (593)
T ss_pred CCCceEECCccEEEEEEEeCCCCEe-----------CC-CCEEEEEecC---------------------c-eeEEEEcC
Confidence 4456899999999999999999997 22 3322222211 0 24579999
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
.+|+|.++.|++||.|+.||+|++|
T Consensus 568 ~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 568 QAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEe
Confidence 9999999999999999999999987
|
|
| >PRK07051 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=119.49 Aligned_cols=69 Identities=35% Similarity=0.500 Sum_probs=66.8
Q ss_pred CceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.||++|++++ ++|++||.|++||+++.+|+|||+++|.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999999999999999999999885
|
|
| >COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-10 Score=129.19 Aligned_cols=271 Identities=17% Similarity=0.211 Sum_probs=184.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccc--cccceEEEcCCCCCcccCCCCH--HHHHHHHHhcCCCEE
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHR--TKVDQAFLVGKGMPPVAAYLNI--PEIICIAKNNNVDAI 134 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~--~~aDe~~~i~~~~~~~~~yldi--~~Ii~ia~~~~vDaI 134 (1427)
+|-.+| +..|+.|++.|++-|++|+++....- .-+.. ..+|+.+.++ +|.|+ ++|.+-.++. ++|
T Consensus 20 ~Iat~g-SHSaL~Il~GAK~EGF~Ti~v~~~gr-~~~Y~~f~~a~e~i~v~-------~f~dil~~~iqe~L~~~--n~I 88 (361)
T COG1759 20 TIATIG-SHSALQILDGAKEEGFRTIAVCQRGR-EKPYEKFPVADEVIIVD-------KFSDILNEEIQEELREL--NAI 88 (361)
T ss_pred EEEEee-cchHHHHhhhHHhcCCcEEEEEecCc-cchHHhhchhheEEEec-------hhHHHhhHHHHHHHHHc--CeE
Confidence 444444 45799999999999999999976432 22222 3366666654 45443 2444544443 345
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
+.-.|.+......-....+.-+|.+|+ ...++.-.|...-+.+|.++||+.|. ...|++|+ .-|||||
T Consensus 89 ~IP~gSfv~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~~lLekAgi~~P~----~~~~PeeI-------dr~VIVK 156 (361)
T COG1759 89 FIPHGSFVAYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEYKLLEKAGLRIPK----KYKSPEEI-------DRPVIVK 156 (361)
T ss_pred EecCCceEEEecchhhhhcccCccccc-HhHhhhhcchhhHHHHHHHcCCCCCc----ccCChHHc-------CCceEEe
Confidence 444454444444433455567888886 56777777999999999999999998 46788775 4599999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHc-cCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccc---
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALAS-FGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR--- 290 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~-fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~--- 290 (1427)
....-||||-+++.|.+|+.+..++........ -+-.+..|||||- |-++..+.+...--+.+.+..-|-.++.+
T Consensus 157 ~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~-G~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg 235 (361)
T COG1759 157 LPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV-GAPFYFHYFYSPIKDRLELLGIDRRYESNLDG 235 (361)
T ss_pred cCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee-ccceeeeeeeccccCceeEeeeeheeeccchh
Confidence 999999999999999999999998876521100 0124689999999 66666665543221223333222111111
Q ss_pred -------cc---------eEEEEccCCCCCHHHHHHHHHHHHHHHHHc------CCCCeEEEEEEEcCCCcEEEEeeCCC
Q psy15244 291 -------YQ---------KVIQIAPAQDMSVSVRDAITETSVRLAKSL------GYSNAGTVEFLLDKDDNFYFIEVNPR 348 (1427)
Q Consensus 291 -------~q---------k~ie~aPa~~l~~e~~~~l~~~a~~l~~al------g~~G~~~VEflvd~dG~~yfIEINpR 348 (1427)
.| .++...|. .+-+.+..++.+++.+++++. |+-|+++.|.++++|=++|+.|+.+|
T Consensus 236 ~~RlPa~~ql~l~~~ptyvv~Gn~p~-vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~R 314 (361)
T COG1759 236 LVRLPAKDQLELNLEPTYVVVGNIPV-VLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSAR 314 (361)
T ss_pred hccCCHHHHhhcCCCceEEEECCcch-hhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEecc
Confidence 11 11223344 467788888999999888765 78899999999999988999999999
Q ss_pred CCCchh
Q psy15244 349 LQVEHT 354 (1427)
Q Consensus 349 l~ge~~ 354 (1427)
+.++.-
T Consensus 315 i~gGTN 320 (361)
T COG1759 315 IVGGTN 320 (361)
T ss_pred ccCCcc
Confidence 998643
|
|
| >PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-12 Score=140.38 Aligned_cols=72 Identities=29% Similarity=0.474 Sum_probs=68.6
Q ss_pred CCCCceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1355 DTAGEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1355 ~~~~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+...|.|||+|++++ |+|++||.|++||+|++||+|||+++|.||.+|+|+++.++.|+.|..|++|++|+
T Consensus 195 s~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 195 SSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCCCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 3446799999999999 79999999999999999999999999999999999999999999999999999986
|
|
| >KOG0368|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-12 Score=165.75 Aligned_cols=165 Identities=16% Similarity=0.250 Sum_probs=136.6
Q ss_pred cceeEEEEeccceeeeeecccccccc-CCCchhhhhcccccceeccCCCCCcceeeee-ecCCcceEEEeeccccccc--
Q psy15244 1246 GERTVFFLYNGLHTTNTYNLQQILKT-SPSDVFAFLRLKSERIFLNGPNIGEEFSCEF-KTGDTAYVTTLSISEHLND-- 1321 (1427)
Q Consensus 1246 ~~r~~~~~~~g~~~~~~~~~~~~~~~-~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v-~~Gd~~~~~~~~i~~~~~~-- 1321 (1427)
-.|++|=.|.+.++++|+++.+.+++ ++.++++. |.+|.++| +.+...|++.++-+.....
T Consensus 577 ~~~~~~~~y~~~LerGQV~p~~~L~~~~~vdli~e---------------~~kY~lkV~rss~~~y~l~mngs~~~v~v~ 641 (2196)
T KOG0368|consen 577 TSRTVFEKYEHSLERGQVPPKDFLLNTFDVDLIYE---------------GNKYTLKVVRSSSGTYVLRMNGSEVTVGVH 641 (2196)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHhhhcceeEEEec---------------CcEEEEEEEecCCceEEEEEcCcEEEEEEE
Confidence 35677888999999999999999997 77777655 99999999 8888888888765442111
Q ss_pred -CCceEEEEEECCEEeEe---ch----hhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCc
Q psy15244 1322 -HGERTVFFLYNGQLRSL---DK----NKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKT 1393 (1427)
Q Consensus 1322 -~g~r~v~~elnG~~~~v---d~----~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKm 1393 (1427)
-+...+.+.+||+++.+ +. .......++....+++|..+++|.||++++++|+.|++|.+||+.+++|.|||
T Consensus 642 ~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKM 721 (2196)
T KOG0368|consen 642 QLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKM 721 (2196)
T ss_pred EecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehehhhe
Confidence 12235888999999988 11 12334455555668899999999999999999999999999999999999999
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+++.|+.+|+|. ...++|+.+++|++|+.++
T Consensus 722 vm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 722 VMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred eeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence 9999999999988 7889999999999999876
|
|
| >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-12 Score=132.91 Aligned_cols=71 Identities=32% Similarity=0.475 Sum_probs=67.6
Q ss_pred CCCceecCCCeEEEE-------EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIE-------VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~-------v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
....|.|||.|+++. |+|++||.|++||+|++||+|||+++|.||.+|+|.+++++.|+.|..|++|++|+
T Consensus 78 ~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 78 EGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 346899999999997 89999999999999999999999999999999999999999999999999999885
|
|
| >KOG0238|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-12 Score=145.43 Aligned_cols=75 Identities=37% Similarity=0.578 Sum_probs=70.7
Q ss_pred CCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.....++.+.|||||.|.+++|++||.|++||.+++|+|||||+.++||.+|+|+.+.++.|++|..|++|++++
T Consensus 596 ~~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 596 TKEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred hccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 444567789999999999999999999999999999999999999999999999999999999999999999875
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-10 Score=139.35 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=98.4
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+.++|||+|..+|.+.+++| .||.+++++||+. + + +. + . . .
T Consensus 424 l~~~~~p~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~-----~-~~------~----~---~------~ 464 (582)
T TIGR01108 424 LTYALFPQVGLKFLENRHNP---------AAFEPKPEEKVIE-----Q-----E-HA------Q----V---V------G 464 (582)
T ss_pred HHHHhccHHHHHHHHhhhcc---------ccccCCCCcchhh-----h-----h-hh------h----c---c------c
Confidence 77889999999999998876 4788888887764 1 0 00 0 0 0 0
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
. +.. ..-..++.++++ |+++.|++....... +...... . .... ..++...+
T Consensus 465 ~-~~~-----~~g~~~~~~~vn-G~~~~V~v~d~~~~~-------------------~~~~~~~-~-~~~~-~~~~a~~~ 515 (582)
T TIGR01108 465 K-YEE-----THASGSYTVEVE-GKAFVVKVSPGGDVS-------------------QITASAP-A-NTSG-GTVAAKAG 515 (582)
T ss_pred c-ccc-----cCCceEEEEEEC-CEEEEEEEcCCcccc-------------------ccccccc-c-cccc-ccccCCCC
Confidence 0 000 001346888898 999988833322110 1110000 0 0000 01112223
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....+.++|.|..++|.+++||.+ .. |..-+.+|-. .....|.||.
T Consensus 516 ~~~~v~ap~~G~v~~~~V~~Gd~V-----------~~-G~~l~~iEam----------------------Kme~~i~ap~ 561 (582)
T TIGR01108 516 AGTPVTAPIAGSIVKVKVSEGQTV-----------AE-GEVLLILEAM----------------------KMETEIKAAA 561 (582)
T ss_pred CCCeEeCCccEEEEEEEeCCCCEE-----------CC-CCEEEEEEec----------------------cceeEEecCC
Confidence 455799999999999999999997 23 3322222211 1356899999
Q ss_pred CeEEEEEEecCCCEEecCCEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVL 1385 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l 1385 (1427)
+|+|.++.|++||.|+.||+|
T Consensus 562 ~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 562 AGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CeEEEEEEeCCCCEeCCCCCC
Confidence 999999999999999999975
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=133.93 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=124.7
Q ss_pred CCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH----HHHHHHHhcCC-cEEEeecCCCCCcCeEEecCHHH--
Q psy15244 160 GPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD----KVKEFCDEVEF-PVILKAAFGGGGRGMRMVANKDA-- 232 (1427)
Q Consensus 160 Gps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e----ea~~~a~~iGy-PvVVKP~~GgGGrGV~iV~s~ee-- 232 (1427)
-++.+...++.||..+..+++++|||+|+++ .+.+.+ ++.+++. ++ |+|+||..|++|+||.++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~--~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~~~~~ 101 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAGITVPELY--GVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGKGILVITSRKDGR 101 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcCCCCCCEE--EecCchhhHHHHHHHHc--cCCCEEEEECCCCCccCeEEEEeccccc
Confidence 3677888899999999999999999999965 344443 3444433 45 69999999999999999976543
Q ss_pred -------------HHHHHHHHHHHHHHccCC-CcEEEEeeccCC-----------ceEEEEEEecccccEEEeeeeccc-
Q psy15244 233 -------------IEENFKRAQSEALASFGK-DDMLVEKYIDRP-----------RHIEVQILGDKYGDVVHLYERDCS- 286 (1427)
Q Consensus 233 -------------L~~a~~~a~~ea~~~fg~-~~vlVEeyIegg-----------reieVqvl~Dg~G~vv~l~erd~s- 286 (1427)
+...+......-....+. +.+++|+++... +.+.|.++.+. .+...-|-..
T Consensus 102 ~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~---~vaa~~R~~~~ 178 (317)
T TIGR02291 102 YRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGY---PVMAMMRLPTR 178 (317)
T ss_pred cccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCE---EEEEEEEccCc
Confidence 444333322111111122 235565544422 45666666543 3322223110
Q ss_pred --ccccc----ceEE-------------------EEccC-----CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Q psy15244 287 --MQRRY----QKVI-------------------QIAPA-----QDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK 336 (1427)
Q Consensus 287 --~qr~~----qk~i-------------------e~aPa-----~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~ 336 (1427)
..+.+ .... ..-|. ..+..+..+++.+.|.++.+++|+ |...+|++++.
T Consensus 179 ~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~ 257 (317)
T TIGR02291 179 ASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDK 257 (317)
T ss_pred cCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeC
Confidence 01111 0011 01111 022335567899999999999998 89999999987
Q ss_pred CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHH
Q psy15244 337 DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 337 dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~ 370 (1427)
++.++++|+|+.++-++ ......|++-.-..+.
T Consensus 258 ~~g~~VlEVN~~Pg~t~-~~a~~~Gl~~~~~~~~ 290 (317)
T TIGR02291 258 EEGPLVLELNARPGLAI-QIANGAGLLPRLKHIE 290 (317)
T ss_pred CCCEEEEEeCCCCCCCH-HHHHHCCCcHHHHHHH
Confidence 66799999999998663 3333456654444443
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-11 Score=106.74 Aligned_cols=67 Identities=45% Similarity=0.708 Sum_probs=64.7
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+|.||++|+|.+|+|++|+.|++||+|+.+++||+..+|+||.+|+|.++.++.|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999999875
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. |
| >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=100.31 Aligned_cols=61 Identities=33% Similarity=0.520 Sum_probs=59.1
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+|++.+|++++|+.|++||+|+.+|+|||..+|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999874
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. |
| >PLN02226 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.5e-10 Score=133.69 Aligned_cols=67 Identities=22% Similarity=0.427 Sum_probs=62.5
Q ss_pred eecCC-CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1360 IGAPM-PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1360 V~APm-~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++.-| +|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|..|++|+.|+
T Consensus 99 lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 99 MGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred CCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 33334 59999999999999999999999999999999999999999999999999999999999985
|
|
| >PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=131.39 Aligned_cols=67 Identities=33% Similarity=0.547 Sum_probs=63.0
Q ss_pred eecCC-CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1360 IGAPM-PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1360 V~APm-~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++..| .|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 52 lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 52 MGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred CCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 44455 59999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-09 Score=130.58 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=61.0
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|+++.+++|+.|..|++|+.++
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~ 77 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVA 77 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEe
Confidence 359999999999999999999999999999999999999999999999999999999999886
|
|
| >PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-09 Score=124.43 Aligned_cols=62 Identities=29% Similarity=0.403 Sum_probs=60.6
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 16 eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (407)
T PRK05704 16 EATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID 77 (407)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=113.04 Aligned_cols=109 Identities=24% Similarity=0.298 Sum_probs=89.5
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEAL 245 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~ 245 (1427)
+++.+|++++++|||+|++. .+.+.+++.++++++ |||+|+||....||| ||+++.+.+++.+++++......
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~--~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGI--VATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCe--eeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 57889999999999999987 789999999999999 999999998655665 99999999999999988764311
Q ss_pred --Hc---cC--CCcEEEEeeccCCceEEEEEEeccc-ccEEEee
Q psy15244 246 --AS---FG--KDDMLVEKYIDRPRHIEVQILGDKY-GDVVHLY 281 (1427)
Q Consensus 246 --~~---fg--~~~vlVEeyIeggreieVqvl~Dg~-G~vv~l~ 281 (1427)
.. .| -..++||+++++++|+.+.+..|.. |.++.++
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 01 11 1259999999989999999999864 5655444
|
|
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=106.65 Aligned_cols=185 Identities=19% Similarity=0.328 Sum_probs=122.8
Q ss_pred HHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCC-CC--CCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEe
Q psy15244 151 VIGAGLEFIGPAPNVLKTLGDKVLARDAALKAD-VP--IIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMV 227 (1427)
Q Consensus 151 ~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aG-Vp--vp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV 227 (1427)
-++.|++|+.|. +.||+...+.|.+.. +. .|++. .+.+.+++.+++++++ -|+|||..|++|+||..+
T Consensus 4 k~~~~i~~~n~~------~~~Kw~v~~~L~~~~~l~~~LP~T~--~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 4 KKQKGIPFFNPG------FFDKWEVYKALSRDPELRPYLPETE--LLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred HhcCCCEEeCCC------CCCHHHHHHHHHcCCcchhhCCCce--EcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence 356799999773 579999999999864 33 45543 6788899999999876 699999999999999866
Q ss_pred c----------------------CHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC----CceEEEEEE--ecccc--cE
Q psy15244 228 A----------------------NKDAIEENFKRAQSEALASFGKDDMLVEKYIDR----PRHIEVQIL--GDKYG--DV 277 (1427)
Q Consensus 228 ~----------------------s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg----greieVqvl--~Dg~G--~v 277 (1427)
. +.++|...+.. ..+...++||+.|+- ++.+.+-++ .++.| .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~v 147 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKE-------LLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQV 147 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHH-------hcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEE
Confidence 3 34555555543 234679999999983 345554444 45444 44
Q ss_pred EEeeeeccc---cccccceEEEEccC-CCC-----CHHHHHHHHHHHHHHHHHc----CC-CCeEEEEEEEcCCCcEEEE
Q psy15244 278 VHLYERDCS---MQRRYQKVIQIAPA-QDM-----SVSVRDAITETSVRLAKSL----GY-SNAGTVEFLLDKDDNFYFI 343 (1427)
Q Consensus 278 v~l~erd~s---~qr~~qk~ie~aPa-~~l-----~~e~~~~l~~~a~~l~~al----g~-~G~~~VEflvd~dG~~yfI 343 (1427)
..+..|-.. +..+...-....|. ..+ .....++|.+.+..+++++ |. -|-..+|+-+|.+|+++||
T Consensus 148 tg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWli 227 (262)
T PF14398_consen 148 TGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLI 227 (262)
T ss_pred EEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEE
Confidence 444443211 11111000111110 011 2335677777777777655 55 4678899999999999999
Q ss_pred eeCCCCCC
Q psy15244 344 EVNPRLQV 351 (1427)
Q Consensus 344 EINpRl~g 351 (1427)
|+|++++-
T Consensus 228 EvN~kP~~ 235 (262)
T PF14398_consen 228 EVNSKPGK 235 (262)
T ss_pred EEeCCCCc
Confidence 99999884
|
|
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=111.71 Aligned_cols=173 Identities=20% Similarity=0.306 Sum_probs=116.0
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcC-CcEEEeec--CCC-CC-cCeEEecCHHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE-FPVILKAA--FGG-GG-RGMRMVANKDAIEENFKRAQSEAL 245 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iG-yPvVVKP~--~Gg-GG-rGV~iV~s~eeL~~a~~~a~~ea~ 245 (1427)
+.+.+|++++++|||+|++. .+.+.+++.++++++| ||+|+||. .|+ |+ -||+++.+++|+.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~--~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGY--VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 46788999999999999987 6789999999999999 99999998 222 22 299999999999999987754211
Q ss_pred Hc--c---CC--CcEEEEeeccCCceEEEEEEeccc--ccEEEeeee---cc-cc---ccccceEEEEccCC--------
Q psy15244 246 AS--F---GK--DDMLVEKYIDRPRHIEVQILGDKY--GDVVHLYER---DC-SM---QRRYQKVIQIAPAQ-------- 301 (1427)
Q Consensus 246 ~~--f---g~--~~vlVEeyIeggreieVqvl~Dg~--G~vv~l~er---d~-s~---qr~~qk~ie~aPa~-------- 301 (1427)
.. . |. ..++||+|++.++|+.+.++.|.. |-++.++.. +- .+ .......+...|..
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~ 161 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAR 161 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHH
Confidence 10 0 11 369999999989999999999864 334433210 00 00 00111233333421
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEE---EEcCCCcEEEEee
Q psy15244 302 ------DMSVSVRDAITETSVRLAKSLGYSNAGTVEF---LLDKDDNFYFIEV 345 (1427)
Q Consensus 302 ------~l~~e~~~~l~~~a~~l~~alg~~G~~~VEf---lvd~dG~~yfIEI 345 (1427)
.++....+++.+.+.++.+.+.-..+..+|+ +++++|+++.+..
T Consensus 162 ~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Da 214 (386)
T TIGR01016 162 EIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDA 214 (386)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEee
Confidence 2455666778888888877765444556665 5556665544443
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=98.72 E-value=5e-07 Score=104.97 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=126.5
Q ss_pred CCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc---------ccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecCH
Q psy15244 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTT---------EPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVANK 230 (1427)
Q Consensus 161 ps~eai~~~~DK~~~r~~a~~aGVpvp~~~~---------~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s~ 230 (1427)
++.+...++.||..+++++.++|||+|+... ....+.+++.+++... ..++++||+.|+||+|+.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6678888999999999999999999999321 0134678888888765 67999999999999999999766
Q ss_pred HH--HHHHHHHHHHHHHHccCCCcEEEEeeccCCce-----------EEEEEEecccccEEEe--eee--------c---
Q psy15244 231 DA--IEENFKRAQSEALASFGKDDMLVEKYIDRPRH-----------IEVQILGDKYGDVVHL--YER--------D--- 284 (1427)
Q Consensus 231 ee--L~~a~~~a~~ea~~~fg~~~vlVEeyIeggre-----------ieVqvl~Dg~G~vv~l--~er--------d--- 284 (1427)
+. +............ ..+...+++|++|..-.+ +.|..+.++ |.+..+ .-| |
T Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~ 173 (285)
T PF14397_consen 96 DGSEINRDISALYAGLE-SLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFH 173 (285)
T ss_pred cCcccccchhHHHHHHH-hcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccC
Confidence 52 1111111111111 111228999999984322 445555554 332211 000 0
Q ss_pred --------------ccc--ccccceEEEEccCCC-----CCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEE
Q psy15244 285 --------------CSM--QRRYQKVIQIAPAQD-----MSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343 (1427)
Q Consensus 285 --------------~s~--qr~~qk~ie~aPa~~-----l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfI 343 (1427)
+.. ........+.-|... +.-..-+++.+.+.++.+.+-..+....|+.+|++| |++|
T Consensus 174 ~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~ll 252 (285)
T PF14397_consen 174 QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLL 252 (285)
T ss_pred CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEE
Confidence 000 001111222234221 122234789999999999888888899999999999 9999
Q ss_pred eeCCCCCCchhHHHHHhCCCHH
Q psy15244 344 EVNPRLQVEHTLSEEITGIDVV 365 (1427)
Q Consensus 344 EINpRl~ge~~vte~~tGiDLv 365 (1427)
|.|.|.+...... .++|.-+.
T Consensus 253 E~N~~~~pgl~~~-~~~g~gl~ 273 (285)
T PF14397_consen 253 EGNARWDPGLMIQ-IANGPGLF 273 (285)
T ss_pred EeeCCCCCCcHhh-hccCcchH
Confidence 9999954333322 44555443
|
|
| >TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-08 Score=119.12 Aligned_cols=62 Identities=27% Similarity=0.505 Sum_probs=60.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 14 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 14 EGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 39999999999999999999999999999999999999999999999999999999999986
|
dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. |
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.1e-08 Score=123.37 Aligned_cols=62 Identities=32% Similarity=0.498 Sum_probs=60.6
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++++++|+.|..|++|++|+
T Consensus 14 eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~ 75 (633)
T PRK11854 14 EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75 (633)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence 59999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-08 Score=123.81 Aligned_cols=64 Identities=33% Similarity=0.416 Sum_probs=61.5
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3469999999999999999999999999999999999999999999999999999999999985
|
|
| >COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=114.84 Aligned_cols=64 Identities=33% Similarity=0.509 Sum_probs=61.7
Q ss_pred CCC-eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1363 PMP-GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1363 Pm~-G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|. |+|++|+|++||.|++||+|++||+.|..++|.||.+|+|.+|.+++|+.|..|++|+.|+
T Consensus 13 ~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~ 77 (404)
T COG0508 13 TMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77 (404)
T ss_pred ccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence 464 9999999999999999999999999999999999999999999999999999999999986
|
|
| >PLN02528 2-oxoisovalerate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=113.78 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=62.1
Q ss_pred ecCCC-eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1361 GAPMP-GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1361 ~APm~-G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|. |+|++|+|++||.|++||+|+++|+|||++++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 7 g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 7 GEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred CCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 33454 9999999999999999999999999999999999999999999999999999999999885
|
|
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-07 Score=117.06 Aligned_cols=67 Identities=34% Similarity=0.536 Sum_probs=63.5
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++++..|+|++|+|++||.|++||+|+++|+|||+++|.|+.+|+|++++++.|+.|..|++|++|+
T Consensus 8 lg~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~ 74 (546)
T TIGR01348 8 IGDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74 (546)
T ss_pred CCCCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence 3445789999999999999999999999999999999999999999999999999999999999885
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-07 Score=117.16 Aligned_cols=62 Identities=39% Similarity=0.540 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 129 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 129 KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999985
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=116.70 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=60.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|++++|+.|..|++|++|+
T Consensus 149 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 149 EGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred eEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999985
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=6e-07 Score=113.42 Aligned_cols=62 Identities=39% Similarity=0.533 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 132 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 132 EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 38999999999999999999999999999999999999999999999999999999999885
|
|
| >cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=77.83 Aligned_cols=64 Identities=33% Similarity=0.480 Sum_probs=61.1
Q ss_pred cCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1362 APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
++-.|++.+|.++.|+.|.+|++++.+|+|||...+.+|.+|+|.+..++.|+.+..|++|++|
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5667999999999999999999999999999999999999999999999999999999999874
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. |
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=109.72 Aligned_cols=62 Identities=35% Similarity=0.479 Sum_probs=60.3
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 49999999999999999999999999999999999999999999999999999999999875
|
|
| >PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-06 Score=103.02 Aligned_cols=62 Identities=31% Similarity=0.463 Sum_probs=60.4
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 16 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 16 EGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 59999999999999999999999999999999999999999999999999999999999885
|
|
| >TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-06 Score=103.47 Aligned_cols=62 Identities=27% Similarity=0.374 Sum_probs=60.2
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCe-eCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQ-VAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|.||+.++|.||.+|+|.++++++|+. |..|++|++|+
T Consensus 13 eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 13 TGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred eEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 499999999999999999999999999999999999999999999999999 99999999984
|
This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score. |
| >COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=91.79 Aligned_cols=166 Identities=20% Similarity=0.315 Sum_probs=113.3
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcC-CcEEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHH--
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE-FPVILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEA-- 244 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iG-yPvVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea-- 244 (1427)
-+++|++++++|||+|++. .+.+.+++.++++++| .|+|+|+---.||| ||+++.|.+|..++.+......
T Consensus 5 EYqaKelf~~~GiPvp~g~--v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCce--eeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 4688999999999999987 7999999999999998 89999998666665 7999999999998887765411
Q ss_pred --HHccCCCcEEEEeeccCC-ceEEEEEEecccccEEEee-eeccc-----cc---cccceEEEEccCCCCCHHHHHHHH
Q psy15244 245 --LASFGKDDMLVEKYIDRP-RHIEVQILGDKYGDVVHLY-ERDCS-----MQ---RRYQKVIQIAPAQDMSVSVRDAIT 312 (1427)
Q Consensus 245 --~~~fg~~~vlVEeyIegg-reieVqvl~Dg~G~vv~l~-erd~s-----~q---r~~qk~ie~aPa~~l~~e~~~~l~ 312 (1427)
...---..+|||+.++-. +|+-+.++.|.......+. ...-- +. +.......+.|...+.+-
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~~g~~~~------ 156 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPY------ 156 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCccCCCHH------
Confidence 110013579999999944 5999999998776554432 11111 11 112234456676666553
Q ss_pred HHHHHHHHHcCCCCeE---EE-------EEEEcCCCcEEEEeeCCC
Q psy15244 313 ETSVRLAKSLGYSNAG---TV-------EFLLDKDDNFYFIEVNPR 348 (1427)
Q Consensus 313 ~~a~~l~~alg~~G~~---~V-------Eflvd~dG~~yfIEINpR 348 (1427)
.+++++..+|+.|-. -. +.+++. ..-++||||=
T Consensus 157 -~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~--Da~lvEINPL 199 (387)
T COG0045 157 -QARELAFKLGLEGELVKQVADIIKKLYKLFVEK--DATLVEINPL 199 (387)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHc--CCcEEEeecc
Confidence 466777777777520 01 122222 3568888883
|
|
| >PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.9e-05 Score=88.25 Aligned_cols=109 Identities=24% Similarity=0.389 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCC-----CCcCeEE-ecCHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG-----GGRGMRM-VANKDAIEENFKRAQSEA 244 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~Gg-----GGrGV~i-V~s~eeL~~a~~~a~~ea 244 (1427)
+-..+++++..+|||+|++. .+.|.+++.++++++|||+++|...-. ---||++ +++++++.+++++.....
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~--~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~ 88 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTR--LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERV 88 (222)
T ss_dssp -HHHHHHHHHTTT------E--EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCee--EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHH
Confidence 55788999999999999997 799999999999999999999998543 1227887 899999999999988776
Q ss_pred HHccC---CCcEEEEeecc-CCceEEEEEEecc-cccEEEee
Q psy15244 245 LASFG---KDDMLVEKYID-RPRHIEVQILGDK-YGDVVHLY 281 (1427)
Q Consensus 245 ~~~fg---~~~vlVEeyIe-ggreieVqvl~Dg-~G~vv~l~ 281 (1427)
..... ...++||+.++ ++.|+.+.+..|. .|.++.++
T Consensus 89 ~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G 130 (222)
T PF13549_consen 89 AAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFG 130 (222)
T ss_dssp HHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEE
T ss_pred HHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEc
Confidence 54333 36899999999 8999999999985 46676654
|
|
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-12 Score=149.97 Aligned_cols=191 Identities=7% Similarity=-0.127 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHCCCC-EEEEccccCcCCHHHHHHHHHHHHHHc--------------C-CceEEEeecCCcchHHHHHHH
Q psy15244 821 YYEDLAKQLVESGAQ-VLCLKDMAGLLKPTAAKLLIGSFREKY--------------P-NILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad-~i~i~Dt~G~l~P~~~~~lv~~lr~~~--------------p-~ipi~~H~Hnd~GlA~An~la 884 (1427)
.+...++.+.+.|.+ .+.+.|++ ...|....++++.+...- | +++..+|+||+.|++++|.+.
T Consensus 111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H 189 (344)
T TIGR02146 111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH 189 (344)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 445556666667765 56777775 456777777777776432 2 355789999999999999999
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CC-CCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DK-RCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVC 962 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~-~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~ 962 (1427)
|...|+..++.|++|+++|+|+.+++ +..|-.. |. ++.+++..|..++.++...++..++.++|++|.+.|.+.++
T Consensus 190 ~Hn~~g~avant~~al~~ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 267 (344)
T TIGR02146 190 AHNDTGCAVANAYNAIEGGATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVGVTIPFN 267 (344)
T ss_pred ecCCCCHHHHHHHHHHHcCCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999984 3233222 32 23345556666665555556677889999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHH
Q psy15244 963 DYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDV 1017 (1427)
Q Consensus 963 ~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev 1017 (1427)
.|..+..+.+..|.+|. +++.+..+.+..++.+|.. +.+..+.+.+.....+
T Consensus 268 ~~~~G~~~~~~~~g~h~-~~~~~~~~~y~~~~~s~~g--~~~~~~~~~~~g~~~~ 319 (344)
T TIGR02146 268 NPITGELAFTHKAGIHV-KAILGNPRTYEFLPPEVFG--RKRHILIARLTGKHAI 319 (344)
T ss_pred CCeeCcchhhcccchhH-HHHhCCcccCCCCCHHHcC--CcceEeeeccccHHHH
Confidence 99999999999999999 7777766666676666632 5556666666644443
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6e-06 Score=101.59 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=59.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i~ 1426 (1427)
.|+|.+|+|++||.|++||+|+++|++|+.++|.||.+|+|.++.+++|+ .|..|++|++|+
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 38999999999999999999999999999999999999999999999995 799999999884
|
|
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0001 Score=89.57 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=85.9
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc-EEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHH-
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP-VILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEAL- 245 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP-vVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~- 245 (1427)
-+..|++++++|||+|++. .+.+.+|+.+.++++||| +++|+..-.|+| ||++..|++|+.+++++......
T Consensus 5 E~eak~lL~~yGIpvp~~~--~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGA--LAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 4678999999999999987 789999999999999995 599985333333 79999999999999998876421
Q ss_pred -Hcc-----CCCcEEEEeeccCCceEEEEEEeccc-ccEEEee
Q psy15244 246 -ASF-----GKDDMLVEKYIDRPRHIEVQILGDKY-GDVVHLY 281 (1427)
Q Consensus 246 -~~f-----g~~~vlVEeyIeggreieVqvl~Dg~-G~vv~l~ 281 (1427)
... .-..++||++++.++|+.+.+..|.. |.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 111 12469999999989999999999864 5666553
|
|
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.2e-06 Score=104.12 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=60.0
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||.++|.||.+|+|.++.+++|+.|..|++|++|+
T Consensus 16 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 16 EGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred EEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999874
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00013 Score=88.68 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=81.3
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc---CCcEEEeecCCCCCcC-----------eEEecCHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV---EFPVILKAAFGGGGRG-----------MRMVANKDAIEEN 236 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i---GyPvVVKP~~GgGGrG-----------V~iV~s~eeL~~a 236 (1427)
.-+.+|++++++|||+|++. .+.+.+|+.+.++++ ++|+|+|+.--.|||| |+++++ +|+.++
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~--va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~a 107 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGA--AASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEEL 107 (422)
T ss_pred CHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHH
Confidence 56788999999999999987 789999999999998 6999999995545444 667766 999999
Q ss_pred HHHHHHHH--HHcc---C--CCcEEEEeeccCCceEEEEEEeccc--ccEE
Q psy15244 237 FKRAQSEA--LASF---G--KDDMLVEKYIDRPRHIEVQILGDKY--GDVV 278 (1427)
Q Consensus 237 ~~~a~~ea--~~~f---g--~~~vlVEeyIeggreieVqvl~Dg~--G~vv 278 (1427)
+++..... .... | -..++|||.+..++|+-+.+..|.. |.++
T Consensus 108 a~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 108 AGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred HHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 98876531 1111 1 2358878878778999999999963 4454
|
|
| >PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.6e-06 Score=100.64 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=58.4
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEE
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVL 1425 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i 1425 (1427)
|+|++|+|++||.|++||+|+++|.+|..++|.||.+|+|.+|++++|+ .|..|++|+++
T Consensus 127 g~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 127 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999996 79999999877
|
|
| >PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=85.63 Aligned_cols=165 Identities=21% Similarity=0.333 Sum_probs=101.1
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc-EEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHHH
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP-VILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEALA 246 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP-vVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~~ 246 (1427)
-+.+|++++++|||+|++. .+.+++++.+.++.+|.| +||||---.||| ||.+++|++|+.++..+.......
T Consensus 4 EyqaK~ll~~~gi~vp~g~--~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGV--VATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SEE--EESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 4678999999999999997 789999999999999875 799998767666 689999999999887765432110
Q ss_pred --ccC-----CCcEEEEeeccCCceEEEEEEecccccE-EEeeeecc--cc------ccccceEEEEccCCCCCHHHHHH
Q psy15244 247 --SFG-----KDDMLVEKYIDRPRHIEVQILGDKYGDV-VHLYERDC--SM------QRRYQKVIQIAPAQDMSVSVRDA 310 (1427)
Q Consensus 247 --~fg-----~~~vlVEeyIeggreieVqvl~Dg~G~v-v~l~erd~--s~------qr~~qk~ie~aPa~~l~~e~~~~ 310 (1427)
..| -..++||++++-.+|+-+.+..|...+. +.+....- .+ .+.......+-|...+++.
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~g~~~~---- 157 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTEGLTPY---- 157 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTTB--HH----
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCCCCCHH----
Confidence 011 2478999999988999999998876543 33332211 11 1112233445565555543
Q ss_pred HHHHHHHHHHHcCCCCeE---EEEE-------EEcCCCcEEEEeeCC
Q psy15244 311 ITETSVRLAKSLGYSNAG---TVEF-------LLDKDDNFYFIEVNP 347 (1427)
Q Consensus 311 l~~~a~~l~~alg~~G~~---~VEf-------lvd~dG~~yfIEINp 347 (1427)
.+.+++..+|+.+.. -.+| +++ -..-++||||
T Consensus 158 ---~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~--~DatllEINP 199 (202)
T PF08442_consen 158 ---QAREIAKKLGLPGKLAEQLADILKKLYRLFRE--YDATLLEINP 199 (202)
T ss_dssp ---HHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHH--TTEEEEEEEE
T ss_pred ---HHHHHHHhccccHHHHHHHHHHHHHHHHHHHH--cCCcEEEecC
Confidence 456667777776421 1122 222 2378999998
|
They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E .... |
| >PRK13380 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.2e-06 Score=84.47 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=51.0
Q ss_pred CceecCCCeEEEEEEec-CCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1358 GEIGAPMPGNIIEVKVK-VGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~-~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
....+.+.|.|+.+.+. +|++|++||++++||+|||..+|.||.+|+|.+++.+.-+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 34566899999999997 8999999999999999999999999999999999876544
|
|
| >PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=4e-05 Score=93.86 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=64.9
Q ss_pred CCCCCCCceecCCCeEEEEEE-ecCCCEEecCCEEEEEEcC---------------------------------------
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVK-VKVGQQVKKNDVLIVMSVM--------------------------------------- 1391 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~-V~~Gd~V~~G~~l~~ieam--------------------------------------- 1391 (1427)
.++....+|.|+++|.|.+++ +++||.|++||+|+.|++-
T Consensus 118 ~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i 197 (409)
T PRK09783 118 YNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADI 197 (409)
T ss_pred ECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHH
Confidence 334456789999999999998 9999999999999999821
Q ss_pred ---------CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1392 ---------KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1392 ---------Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.-...|+||++|+|.+..+.+|+.|..|+.|++|.
T Consensus 198 ~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 198 RRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 02357999999999999999999999999999873
|
|
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.4e-05 Score=79.49 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCH-HHHHHHHHHHHHHHHHccCCCcEEEEeeccCCc-
Q psy15244 186 IIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK-DAIEENFKRAQSEALASFGKDDMLVEKYIDRPR- 263 (1427)
Q Consensus 186 vp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~-eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggr- 263 (1427)
+|++. ...+.+++.+|.++.+. +|+||..|.||+||.++... ..+...++.+. ..+...+++|+||+.-+
T Consensus 12 ~P~T~--vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~-----~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPTL--VSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLT-----KNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--EE--EES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHT-----TTTTS-EEEEE--GGGGG
T ss_pred CcCEE--EECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHH-----hcCCccEEEEeccccccC
Confidence 35554 56789999999999998 99999999999999999874 34444444332 22346799999999544
Q ss_pred -eEEEEEEecccccEEEeeeec-----cccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC
Q psy15244 264 -HIEVQILGDKYGDVVHLYERD-----CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337 (1427)
Q Consensus 264 -eieVqvl~Dg~G~vv~l~erd-----~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d 337 (1427)
+.++-++ + |..++..-|- ...+.......+.+ .++++. .++++.....++.-|+. ...+|++-
T Consensus 84 GDkRii~~-n--G~~~~av~R~P~~gd~R~N~~~Gg~~~~~---~lt~~e-~~i~~~i~~~L~~~Gl~-f~GiDvig--- 152 (173)
T PF02955_consen 84 GDKRIILF-N--GEPSHAVRRIPAKGDFRSNLAAGGSAEPA---ELTERE-REICEQIGPKLREDGLL-FVGIDVIG--- 152 (173)
T ss_dssp -EEEEEEE-T--TEE-SEEEEE--SS-S---GGGTSCEEEE---E--HHH-HHHHHHHHHHHHHTT---EEEEEEET---
T ss_pred CCEEEEEE-C--CEEhHHeecCCCCCCceeeeccCCceeec---CCCHHH-HHHHHHHHHHHhhcCcE-EEEEeccc---
Confidence 3444443 2 3455433331 11111122222222 234333 34444444444444443 45688762
Q ss_pred CcEEEEeeCCCCCC
Q psy15244 338 DNFYFIEVNPRLQV 351 (1427)
Q Consensus 338 G~~yfIEINpRl~g 351 (1427)
+ |++|||.-=.+
T Consensus 153 ~--~l~EiNvtsp~ 164 (173)
T PF02955_consen 153 D--KLTEINVTSPT 164 (173)
T ss_dssp T--EEEEEE-SS--
T ss_pred c--ceEEEeccCch
Confidence 2 89999975443
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0014 Score=81.22 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=29.1
Q ss_pred ceeEeecccccccchhhhhccccccccccccc
Q psy15244 613 KHVLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
+.+.|+|||+||+|||+.|+|.|+.|.+.+++
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~ 34 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACE 34 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHH
Confidence 46899999999999999999999999998744
|
|
| >KOG0559|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.1e-05 Score=91.71 Aligned_cols=61 Identities=23% Similarity=0.420 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|++..|+.++||.|++.+.++.||..|...+|.||.+|+|++++|++||+|+.|+-|+.|+
T Consensus 87 G~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~ 147 (457)
T KOG0559|consen 87 GDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKIS 147 (457)
T ss_pred chHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEec
Confidence 6666799999999999999999999999999999999999999999999999999999886
|
|
| >cd06848 GCS_H Glycine cleavage H-protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.2e-05 Score=73.81 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=49.0
Q ss_pred ecCCCeEEEEEEecC-CCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCee
Q psy15244 1361 GAPMPGNIIEVKVKV-GQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416 (1427)
Q Consensus 1361 ~APm~G~v~~v~V~~-Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V 1416 (1427)
...+.|+|..+.... |+.|++||++++||+||+..+|.||.+|+|.+++.+.++..
T Consensus 24 ~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p 80 (96)
T cd06848 24 AQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP 80 (96)
T ss_pred HHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence 446789999866555 99999999999999999999999999999999988776654
|
Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. |
| >PLN02235 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=80.02 Aligned_cols=106 Identities=10% Similarity=0.162 Sum_probs=83.3
Q ss_pred HHHHHHHHHhC-----CCCCCCCccccC-CCHHHHHHHHHh---cCCc-EEEeecCCCCCc----CeEEecCHHHHHHHH
Q psy15244 172 KVLARDAALKA-----DVPIIPGTTEPV-TDVDKVKEFCDE---VEFP-VILKAAFGGGGR----GMRMVANKDAIEENF 237 (1427)
Q Consensus 172 K~~~r~~a~~a-----GVpvp~~~~~~v-~s~eea~~~a~~---iGyP-vVVKP~~GgGGr----GV~iV~s~eeL~~a~ 237 (1427)
-+.+|++++++ |||+|.+. .+ .+.+++.+++++ ++.| +||||---.||| ||.++.|++|+.++.
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~~--v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a 85 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIRS--AQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV 85 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCCe--eccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence 35678888887 99999987 45 899999999988 7775 699999888777 489999999999998
Q ss_pred HHHHHHHHHcc----CCCcEEEEeeccCCceEEEEEEecccccEEE
Q psy15244 238 KRAQSEALASF----GKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279 (1427)
Q Consensus 238 ~~a~~ea~~~f----g~~~vlVEeyIeggreieVqvl~Dg~G~vv~ 279 (1427)
++......... .-..++||++++-.+|+-+.++.|.....+.
T Consensus 86 ~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii 131 (423)
T PLN02235 86 KERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSIS 131 (423)
T ss_pred HHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEE
Confidence 87654321000 1137899999998899999999987766643
|
|
| >TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.6e-05 Score=88.48 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=32.4
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.||.+|.|.+++|++||.|++||+|+.|+.
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 45679999999999999999999999999999965
|
|
| >KOG0557|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=86.59 Aligned_cols=63 Identities=29% Similarity=0.473 Sum_probs=60.1
Q ss_pred CCC-eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCC-CeeCCCCEEEEE
Q psy15244 1363 PMP-GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG-GQVAQNDLVVVL 1425 (1427)
Q Consensus 1363 Pm~-G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G-~~V~~g~~L~~i 1425 (1427)
.|. |+|++|.-++||.+++||+||+||+.|-.+.+.++.+|.+.+|++.+| ..|..|.+|+.|
T Consensus 49 TMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaii 113 (470)
T KOG0557|consen 49 TMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAII 113 (470)
T ss_pred cccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEE
Confidence 465 999999999999999999999999999999999999999999999999 889999999976
|
|
| >PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00017 Score=86.53 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=32.3
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.++++|.|.+++|++||.|++||+|+.|+.
T Consensus 47 ~~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 47 DVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eeEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 35679999999999999999999999999999976
|
|
| >PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00018 Score=84.87 Aligned_cols=68 Identities=32% Similarity=0.409 Sum_probs=60.5
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC---------------------------------------------
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK--------------------------------------------- 1392 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK--------------------------------------------- 1392 (1427)
..|.++.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a 127 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQA 127 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45888999999999999999999999999997610
Q ss_pred -------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1393 -------------------------TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1393 -------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
-.+.|+||++|+|.++.+++|+.|..|++|+.|
T Consensus 128 ~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~I 185 (310)
T PRK10559 128 NNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVAL 185 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEE
Confidence 025799999999999999999999999999875
|
|
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00045 Score=80.46 Aligned_cols=174 Identities=17% Similarity=0.347 Sum_probs=104.2
Q ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHhC-------CCCCCCCccccCC-CHHHHHHHH--HhcCCcEEEeecCCC---CC
Q psy15244 155 GLEFIGPAPNVLKTLGDKVLARDAALKA-------DVPIIPGTTEPVT-DVDKVKEFC--DEVEFPVILKAAFGG---GG 221 (1427)
Q Consensus 155 Gi~fiGps~eai~~~~DK~~~r~~a~~a-------GVpvp~~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~Gg---GG 221 (1427)
.+.++ -++++++.+.|...+.+.+.+. .|.+|++. .+. +.+++.+.. ..+.||+|+||.... .+
T Consensus 78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 154 (307)
T PF05770_consen 78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFV--VINSDAESLPELLKEAGLKFPLICKPLVACGSADS 154 (307)
T ss_dssp TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EE--EESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceE--EEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence 45544 5678899999999888888764 57788875 333 344444443 467899999999654 56
Q ss_pred cCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCC-ceEEEEEEecccccEEEeeeec----ccc---ccc---
Q psy15244 222 RGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP-RHIEVQILGDKYGDVVHLYERD----CSM---QRR--- 290 (1427)
Q Consensus 222 rGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIegg-reieVqvl~Dg~G~vv~l~erd----~s~---qr~--- 290 (1427)
..|.+|.+.+.|.+. ..++++||||..+ .-+-|.+++|.. ++..|. .+. .+.
T Consensus 155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~v----~~v~R~SLpn~~~~~~~~~~~~ 217 (307)
T PF05770_consen 155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDKV----FVVKRPSLPNVSSGKLDREEIF 217 (307)
T ss_dssp CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTEE----EEEEEE------SSS-TCGGCC
T ss_pred eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCEE----EEEECCCCCCCCcccccccccc
Confidence 789999999998752 3689999999965 678888887742 222221 000 000
Q ss_pred --cceE-----------EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-C-CcEEEEeeCCCCC
Q psy15244 291 --YQKV-----------IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK-D-DNFYFIEVNPRLQ 350 (1427)
Q Consensus 291 --~qk~-----------ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-d-G~~yfIEINpRl~ 350 (1427)
+..+ ....+. .....-.+.+.+.|..+-++||+. .+++|++++. + |++|+|.||.=++
T Consensus 218 f~~~~vs~~~~~~~~~~~d~~~~-~~~~p~~~~v~~la~~LR~~lgL~-LFgfDvI~~~~t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 218 FDFHQVSKLESSSDLSDLDKDPS-QVEMPPDELVEKLAKELRRALGLT-LFGFDVIRENGTGGRYYVIDINYFPG 290 (307)
T ss_dssp CEGGGTCSTTTSSGGGSBSS-TT-TTTS--HHHHHHHHHHHHHHHT-S-EEEEEEEEGCCT-SSEEEEEEEES--
T ss_pred eeccccCCccccCchhhcccCcc-cccCCCHHHHHHHHHHHHHHhCcc-eeeeEEEEEcCCCCcEEEEEeccCCC
Confidence 0000 000011 011112356788888888999996 8899999986 5 7899999999777
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=72.38 Aligned_cols=52 Identities=23% Similarity=0.441 Sum_probs=44.5
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
-+-|.|+.+.+ ++|+.|++||++++||+||+..+|.||.+|+|.+++.+..+
T Consensus 27 ~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 27 ENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred HhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 45677877766 56999999999999999999999999999999999655444
|
The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0052 Score=76.02 Aligned_cols=193 Identities=18% Similarity=0.169 Sum_probs=127.9
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.+.+ .|++.||.+.+. ......+.++.+++..++..+-..+|-.-. | ..
T Consensus 13 ~~~~~~~~~~~~~~~--~Gv~~ie~g~p~--------~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~------g----~~ 72 (430)
T PRK07028 13 LELDRAVEIAKEAVA--GGADWIEAGTPL--------IKSEGMNAIRTLRKNFPDHTIVADMKTMDT------G----AI 72 (430)
T ss_pred CCHHHHHHHHHHHHh--cCCcEEEeCCHH--------HHHhhHHHHHHHHHHCCCCEEEEEeeeccc------h----HH
Confidence 577899999999887 799999985321 112236778888887766554444442211 1 22
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.|.++|.|.+++.... +...+...++.+++.|. .+...+ + ++ .+ ..+.++++.+.|+|.|
T Consensus 73 ~v~~a~~aGAdgV~v~g~~-~~~~~~~~i~~a~~~G~---~~~~g~-~-----s~----~t---~~e~~~~a~~~GaD~I 135 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA-DDSTIEDAVRAARKYGV---RLMADL-I-----NV----PD---PVKRAVELEELGVDYI 135 (430)
T ss_pred HHHHHHHcCCCEEEEecCC-ChHHHHHHHHHHHHcCC---EEEEEe-c-----CC----CC---HHHHHHHHHhcCCCEE
Confidence 6899999999999987543 33346778889999988 443321 1 22 11 1234677788999998
Q ss_pred EEccccCc---CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHH
Q psy15244 838 CLKDMAGL---LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVS 914 (1427)
Q Consensus 838 ~i~Dt~G~---l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~ 914 (1427)
.+. .|. ..+....+.++.+++.+ ++||.+|+ |....|+..++++||+.|=+.-. -.+.++..+.+.
T Consensus 136 ~~~--pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~G----GI~~~n~~~~l~aGAdgv~vGsa----I~~~~d~~~~~~ 204 (430)
T PRK07028 136 NVH--VGIDQQMLGKDPLELLKEVSEEV-SIPIAVAG----GLDAETAAKAVAAGADIVIVGGN----IIKSADVTEAAR 204 (430)
T ss_pred EEE--eccchhhcCCChHHHHHHHHhhC-CCcEEEEC----CCCHHHHHHHHHcCCCEEEEChH----HcCCCCHHHHHH
Confidence 765 232 12223456788888887 69999988 88999999999999998744322 233455555555
Q ss_pred HHHh
Q psy15244 915 CLEN 918 (1427)
Q Consensus 915 ~L~~ 918 (1427)
.|+.
T Consensus 205 ~l~~ 208 (430)
T PRK07028 205 KIRE 208 (430)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR01730 RND_mfp RND family efflux transporter, MFP subunit | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00017 Score=85.11 Aligned_cols=70 Identities=30% Similarity=0.433 Sum_probs=61.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--------------------------------------------
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-------------------------------------------- 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------------------------------------------- 1392 (1427)
...|.||.+|.|.+++|++||.|++||+|+.++.-.
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~ 105 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD 105 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 457999999999999999999999999999996411
Q ss_pred ---------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1393 ---------------------------TETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1393 ---------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
-...|+||++|+|..+.+++|+.|.+|+.|+.|.
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 1247999999999999999999999999999763
|
This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. |
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=64.79 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=62.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||||+|.|.-.-.+++++.+..--.- +|..+.. .......+.+.+ +..|.+.|+++|+++++|.+++|
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~-v~~aPGN--~G~~~~~~~~~~--------~~~d~~~l~~~a~~~~idlvvvG 69 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEE-VYVAPGN--PGTAELGKNVPI--------DITDPEELADFAKENKIDLVVVG 69 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEE-EEEEE----TTGGGTSEEE-S---------TT-HHHHHHHHHHTTESEEEES
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCE-EEEeCCC--HHHHhhceecCC--------CCCCHHHHHHHHHHcCCCEEEEC
Confidence 389999999666678999987643322 2222221 111122233332 24789999999999999999999
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHH
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKT 168 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~ 168 (1427)
.+.--. ..+++.+++.||+.+||+.++.++
T Consensus 70 PE~pL~-~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 70 PEAPLV-AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp SHHHHH-TTHHHHHHHTT-CEES--HHHHHH
T ss_pred ChHHHH-HHHHHHHHHCCCcEECcCHHHHhc
Confidence 742111 157899999999999999988764
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0028 Score=72.01 Aligned_cols=176 Identities=16% Similarity=0.169 Sum_probs=105.3
Q ss_pred HHHHhCCHHHHHHHHHhCC--CCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHH
Q psy15244 165 VLKTLGDKVLARDAALKAD--VPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQS 242 (1427)
Q Consensus 165 ai~~~~DK~~~r~~a~~aG--Vpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ 242 (1427)
....+.||...|+.+++.+ ...||-. +..++++++.- ..+.-++||||..|+|+..+....+.-+...+...+..
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~~--~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~ 90 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDIDF--DSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNR 90 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhhh--hcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHH
Confidence 3457889999999999886 3344433 35566666532 35567799999999998777766554444333333221
Q ss_pred HHHHccC-----------CCcEEEEeeccCCc-----eEEEEEEecccccEEE--------------eeeeccccccccc
Q psy15244 243 EALASFG-----------KDDMLVEKYIDRPR-----HIEVQILGDKYGDVVH--------------LYERDCSMQRRYQ 292 (1427)
Q Consensus 243 ea~~~fg-----------~~~vlVEeyIeggr-----eieVqvl~Dg~G~vv~--------------l~erd~s~qr~~q 292 (1427)
-....++ ...+++|++|+... .+-+.++. |++.. ++.++-....-..
T Consensus 91 wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~---G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~ 167 (239)
T PF14305_consen 91 WLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN---GKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRS 167 (239)
T ss_pred HhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC---CEEEEEEEEeCCCCCeEEEEECcccCCCcccc
Confidence 1111111 36899999998542 34444443 22222 1222111111000
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
..- .....--++..++|.+.|.++++.+.| ..|||...+ |++||-|+-..++++
T Consensus 168 ~~~--~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~~-~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 168 DYP--PDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNVD-GKIYFGELTFTPGAG 221 (239)
T ss_pred CCC--CCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEeC-CcEEEEeeecCCCCc
Confidence 000 111112356668999999999988665 689998774 669999999998865
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0028 Score=77.80 Aligned_cols=33 Identities=42% Similarity=0.624 Sum_probs=30.0
Q ss_pred cceeEeecccccccchhhhhccccccccccccc
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
++.+.|+|||+||+|||++|||.|+.|+..+++
T Consensus 10 ~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~ 42 (468)
T PRK12581 10 QQQVAITETVLRDGHQSLMATRLSIEDMLPVLT 42 (468)
T ss_pred CCceEEEECCccchhhhccccCCCHHHHHHHHH
Confidence 357999999999999999999999999998755
|
|
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00021 Score=60.95 Aligned_cols=36 Identities=47% Similarity=0.600 Sum_probs=31.8
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCc
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKT 1393 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKm 1393 (1427)
..|.||++|+|.+|+|++||.|++||+|++|+....
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 368899999999999999999999999999987543
|
|
| >PRK15136 multidrug efflux system protein EmrA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00031 Score=85.56 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.++.+|.|.++.|++||.|++||+|+.|+.
T Consensus 60 ~~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 60 NQVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred eEEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 35678999999999999999999999999999964
|
|
| >PRK01202 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00035 Score=71.53 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=52.2
Q ss_pred ecCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE---ecCCCeeC---CCC-EEEEEe
Q psy15244 1361 GAPMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF---VEVGGQVA---QND-LVVVLD 1426 (1427)
Q Consensus 1361 ~APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~---v~~G~~V~---~g~-~L~~i~ 1426 (1427)
.....|.|..+.. +.|++|++||++++||+||...+|.||++|+|.+++ ....+.++ .|+ -|++|+
T Consensus 32 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~ 105 (127)
T PRK01202 32 AQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIK 105 (127)
T ss_pred HHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEE
Confidence 3457788877754 569999999999999999999999999999999994 44445565 444 677664
|
|
| >PRK03598 putative efflux pump membrane fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00035 Score=83.33 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.|+++|.|.+++|++||.|++||+|+.|+.
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 4579999999999999999999999999999974
|
|
| >PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00054 Score=83.46 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=60.7
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
....|.++++|.|.++.|++||.|++||+|+.|+.-.
T Consensus 62 ~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~ 141 (385)
T PRK09578 62 RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDY 141 (385)
T ss_pred eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3568999999999999999999999999999997521
Q ss_pred ----------------------------ceeeeecCCCeEEEEEEecCCCeeCCC--CEEEEEe
Q psy15244 1393 ----------------------------TETLIHASADGVVKEIFVEVGGQVAQN--DLVVVLD 1426 (1427)
Q Consensus 1393 ----------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g--~~L~~i~ 1426 (1427)
-.+.|+||++|+|.+..+++|+.|..| .+|+.|.
T Consensus 142 ~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 142 TEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 024899999999999999999999986 4777653
|
|
| >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=61.08 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=52.5
Q ss_pred ccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEE
Q psy15244 1289 LNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNI 1368 (1427)
Q Consensus 1289 v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v 1368 (1427)
+.+++.|+..+|.+++|+.+ +. |..-..++-+ .....|.||++|+|
T Consensus 5 v~a~~~G~i~~~~v~~Gd~V-----------~~-g~~l~~ve~~----------------------K~~~~I~a~~~G~V 50 (71)
T PRK05889 5 VRAEIVASVLEVVVNEGDQI-----------GK-GDTLVLLESM----------------------KMEIPVLAEVAGTV 50 (71)
T ss_pred EeCCCCEEEEEEEeCCCCEE-----------CC-CCEEEEEEec----------------------cceeEEeCCCCEEE
Confidence 67889999999999999997 22 3222222211 13567999999999
Q ss_pred EEEEecCCCEEecCCEEEEEE
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.++++++||.|+.|++|++|+
T Consensus 51 ~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 51 SKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEEEeCCCCEECCCCEEEEEC
Confidence 999999999999999999874
|
|
| >PRK00624 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00061 Score=68.15 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=42.3
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
-+-|.|+.+.. +.|+.|++||++++||+||+-.+|.||++|+|.+++-
T Consensus 29 ~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~ 77 (114)
T PRK00624 29 ENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNT 77 (114)
T ss_pred HhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence 45677887776 5599999999999999999999999999999999853
|
|
| >KOG0558|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00023 Score=80.77 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=58.9
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEeC
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~~ 1427 (1427)
+|.+|+|++||.|++=|+||++++.|...+|++-++|+|++++-+++|....|++|+.+++
T Consensus 80 ~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~ev 140 (474)
T KOG0558|consen 80 TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEV 140 (474)
T ss_pred eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeee
Confidence 6889999999999999999999999999999999999999999999999999999998874
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.035 Score=65.72 Aligned_cols=226 Identities=9% Similarity=0.056 Sum_probs=141.8
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..++.+++++.++...+ .|+..|-+-||..++....+ -.+-++.|++..|+..+..+.++--.. +.....-..
T Consensus 34 ~~ls~eeI~~~~~~~~~--~G~~~i~l~gg~~~~~~~~~----~~~i~~~Ik~~~~~i~~~~~s~~e~~~-~~~~~g~~~ 106 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVA--KGATEVCIQGGLNPQLDIEY----YEELFRAIKQEFPDVHIHAFSPMEVYF-LAKNEGLSI 106 (309)
T ss_pred ccCCHHHHHHHHHHHHH--CCCCEEEEecCCCCCCCHHH----HHHHHHHHHHHCCCceEEecCHHHHHH-HHHHcCCCH
Confidence 46899999999988877 69998888776544211111 124456777777777776665421000 000000113
Q ss_pred HHHHHHHHhcCCCEEE-E-ecc------------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 756 GAFCRLASQAGIDIFR-V-FDP------------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~r-i-f~~------------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
.+.+++.+++|++.+. + +.. -...+...++++.+++.|+ .+..++.+. -| -+.+.
T Consensus 107 ~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi---~~~s~~iiG----~~----Et~ed 175 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGI---PTTATMMFG----HV----ENPEH 175 (309)
T ss_pred HHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CceeeEEec----CC----CCHHH
Confidence 5568888899999774 1 111 1133455688999999999 666665544 33 47778
Q ss_pred HHHHHHHHHHCCCCEEE----E------cccc-------CcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHHHHH
Q psy15244 822 YEDLAKQLVESGAQVLC----L------KDMA-------GLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~----i------~Dt~-------G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~An~l 883 (1427)
.++.+..+.+.+.+... + ++|- .-++|.+..+++...|=-+|+++ |..-. +++|.- ...
T Consensus 176 ~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~--~~~ 252 (309)
T TIGR00423 176 RVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLK--LAQ 252 (309)
T ss_pred HHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHH--HHH
Confidence 88888888887765211 1 3442 23677888888888887777544 43333 445533 247
Q ss_pred HHHHhcCCEEEecc-----ccCCCCCC--CCcHHHHHHHHHhCCCC
Q psy15244 884 ACVKAGADIVDVAA-----DSMSGICS--QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 884 aAi~AGad~VD~av-----~GmG~~tg--n~~lE~vv~~L~~~g~~ 922 (1427)
.|+.+||+-+++|+ +...|... .++.++++..++..|+.
T Consensus 253 ~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~ 298 (309)
T TIGR00423 253 VALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV 298 (309)
T ss_pred HHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 88999999999876 44444222 35789999988877654
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.016 Score=62.55 Aligned_cols=172 Identities=20% Similarity=0.238 Sum_probs=96.7
Q ss_pred CHHHHHHhCCHHHHHHHH----HhC---CCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHH
Q psy15244 162 APNVLKTLGDKVLARDAA----LKA---DVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234 (1427)
Q Consensus 162 s~eai~~~~DK~~~r~~a----~~a---GVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~ 234 (1427)
|.+++-.+.||--....| ++. .+|..+-+ ...+..+. ...-.||+|||--.+.+|.|=.+|++..++.
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt--~ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~q 76 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQT--YYPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQ 76 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---E--EESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceee--ecCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHHH
Confidence 455666677774433222 333 45655543 23344432 3345799999999999999999999999888
Q ss_pred HHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec-cccc--cccceEEEEccCCCCCHHHHHHH
Q psy15244 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD-CSMQ--RRYQKVIQIAPAQDMSVSVRDAI 311 (1427)
Q Consensus 235 ~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd-~s~q--r~~qk~ie~aPa~~l~~e~~~~l 311 (1427)
+...-.... +.-+-+|.||+....+.+|-+++.. .+...+. +.-- .-...+.|..|. + ++.
T Consensus 77 Di~sll~~~------~~Y~T~EPfId~kyDirvqkIG~~y---kA~~R~sis~nWK~N~gsa~lEqi~~---~----~ry 140 (203)
T PF02750_consen 77 DIASLLAIT------KDYATTEPFIDAKYDIRVQKIGNNY---KAYMRTSISGNWKANTGSAMLEQIAM---T----ERY 140 (203)
T ss_dssp HHHHHHHHH------TS-EEEEE---EEEEEEEEEETTEE---EEEEEEESSSTSSTTSSSEEEEEE----------HHH
T ss_pred HHHHHHHhc------CceEEeeccccceeEEEEEEEcCeE---EEEEEccccccccccccchheeecCC---C----hHH
Confidence 765443321 4567899999977889998887643 3322221 1111 112334444432 2 455
Q ss_pred HHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCC---CCCCchh
Q psy15244 312 TETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP---RLQVEHT 354 (1427)
Q Consensus 312 ~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINp---Rl~ge~~ 354 (1427)
...+..+.+.+|=--.+.+|.+..+||+-|++|+|- .+-|+|.
T Consensus 141 k~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m~L~g~~q 186 (203)
T PF02750_consen 141 KLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSMPLIGEHQ 186 (203)
T ss_dssp HHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT----GGGH
T ss_pred HHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcccccchhH
Confidence 567777788885445899999999999999999994 3435543
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >PRK12784 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0023 Score=57.92 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=63.6
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCcee-eeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTET-LIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~-~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.||.-|+|-+++|.+++.|-+-++|+.|+.|.-+. .|.--++|-|..+.|.+||.|..+.+|+.++
T Consensus 6 e~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 6 EEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 46889999999999999999999999999999997554 4788999999999999999999999999876
|
|
| >PRK15030 multidrug efflux system transporter AcrA; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00089 Score=81.92 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=60.2
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
....|.++.+|.|.++.|++||.|++||+|+.|+.-.
T Consensus 64 ~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~ 143 (397)
T PRK15030 64 RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEY 143 (397)
T ss_pred EEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567999999999999999999999999999997421
Q ss_pred ----------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCE--EEEE
Q psy15244 1393 ----------------------------TETLIHASADGVVKEIFVEVGGQVAQNDL--VVVL 1425 (1427)
Q Consensus 1393 ----------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~--L~~i 1425 (1427)
-.+.|+||++|+|.+..+++|+.|..|+. |+.|
T Consensus 144 d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 144 DQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 12579999999999999999999999984 5554
|
|
| >PRK11578 macrolide transporter subunit MacA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=80.23 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.5
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
....|.||++|.|.++.|++||.|++||+|+.|+.
T Consensus 60 ~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 60 RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 45679999999999999999999999999999986
|
|
| >PRK06748 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0017 Score=61.11 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred eccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeE
Q psy15244 1288 FLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGN 1367 (1427)
Q Consensus 1288 ~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~ 1367 (1427)
.+.++|.|...+|.+++||.+ .. |.--+.+|-. +. ....|.||..|+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V-----------~~-gd~l~~IETM--------------------dK-~~~ei~Ap~~G~ 52 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYV-----------YE-WEKLALIETI--------------------DK-QKVEIKVGISGY 52 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEE-----------CC-CCEEEEEEcC--------------------CC-ceEEEecCCCEE
Confidence 467889999999999999997 22 3322222210 11 123799999999
Q ss_pred EEEEEecCCCEEecCCEEEEEEc
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
|.+++|++||.|+.||+|+.|+.
T Consensus 53 v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 53 IESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEEEEeCCCCEECCCCEEEEEEC
Confidence 99999999999999999999974
|
|
| >TIGR00527 gcvH glycine cleavage system H protein | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0005 Score=70.36 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=44.5
Q ss_pred cCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1362 APMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1362 APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
....|.|..+.. ++|++|++||++++|||||+-.+|.||++|+|.+++-..-+
T Consensus 32 ~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 32 QDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred hhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 457777766654 57999999999999999999999999999999998755433
|
The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff. |
| >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=59.08 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=52.1
Q ss_pred eccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeE
Q psy15244 1288 FLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGN 1367 (1427)
Q Consensus 1288 ~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~ 1367 (1427)
.+.+++.|+.++|.++.|+.+ .. |..-..++.. .....|.||..|+
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V-----------~~-g~~l~~ve~~----------------------k~~~~v~s~~~G~ 48 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTV-----------EE-GQDVVILESM----------------------KMEIPIVAEEAGT 48 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEE-----------CC-CCEEEEEEcC----------------------CCcceEeCCCCEE
Confidence 356789999999999999986 22 3222222111 1356799999999
Q ss_pred EEEEEecCCCEEecCCEEEEEE
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
|.++++++||.|+.||+|+.||
T Consensus 49 v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 49 VKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEEecCCCEECCCCEEEEEC
Confidence 9999999999999999999986
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.012 Score=67.87 Aligned_cols=184 Identities=15% Similarity=0.062 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.++-++++..|.+ .|++.||+|-|.. =.++.|-|.. +-|+.++++|+. +++++-.+
T Consensus 27 ~~~~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm------ 97 (263)
T CHL00200 27 DIVITKKALKILDK--KGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIF------ 97 (263)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEE------
Confidence 45778899999998 7999999985433 2233455444 457888888865 67774322
Q ss_pred ccccCCC-cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYS-PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~-~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|-. .-=++.|++.++++|+|.+-|-|-. ++......+.+++.|+ .. +.+. +| .++.+.+.
T Consensus 98 -~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP--~ee~~~~~~~~~~~gi---~~---I~lv----~P---tT~~eri~ 161 (263)
T CHL00200 98 -TYYNPVLHYGINKFIKKISQAGVKGLIIPDLP--YEESDYLISVCNLYNI---EL---ILLI----AP---TSSKSRIQ 161 (263)
T ss_pred -ecccHHHHhCHHHHHHHHHHcCCeEEEecCCC--HHHHHHHHHHHHHcCC---CE---EEEE----CC---CCCHHHHH
Confidence 343311 1125789999999999999888864 4778888899999999 22 2222 55 24556555
Q ss_pred HHHHHHHHCCCCEEEEccccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEE
Q psy15244 824 DLAKQLVESGAQVLCLKDMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~V 893 (1427)
.+++..... +-.++..=++|. ..|..+.++++.+|+.. ++||.+ .+|.. ..++-...++|||.|
T Consensus 162 ~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~v----GFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 162 KIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIIL----GFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence 555443211 222333555665 45788999999999987 889887 45666 345666778999975
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.015 Score=66.76 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhccc-----cChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLK-----ECPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~-----e~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|.+ .|++.||+|-|.+ -.++.|-|. ++-++.++.+|+..+++++-.+.
T Consensus 22 ~~~~~~~~~~~l~~--~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~----- 94 (256)
T TIGR00262 22 TLETSLEIIKTLIE--AGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLT----- 94 (256)
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE-----
Confidence 45677899999998 7999999986542 122344443 34477788888765667754322
Q ss_pred ccccCC-CcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNY-SPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~-~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
|.|- -.-=.++|++.++++|++.+-+.|-. .+.....++.+++.|. .... . .+| .++.+.+.
T Consensus 95 --Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl---~~i~---l----v~P---~T~~eri~ 157 (256)
T TIGR00262 95 --YYNLIFRKGVEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGV---KPIF---L----VAP---NADDERLK 157 (256)
T ss_pred --eccHHhhhhHHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCC---cEEE---E----ECC---CCCHHHHH
Confidence 3220 01124679999999999998888754 4678888999999998 3221 1 145 35566665
Q ss_pred HHHHHHHHCCC-CEEEEccccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEE
Q psy15244 824 DLAKQLVESGA-QVLCLKDMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~Ga-d~i~i~Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~V 893 (1427)
.+++.. .|. -.++.....|.- .+..+.++++.+|+.. +.||.+ +.|.. -.++-.++++|||.|
T Consensus 158 ~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~v----gfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 158 QIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYS-AKPVLV----GFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred HHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc-CCCEEE----eCCCCCHHHHHHHHHcCCCEE
Confidence 555532 222 233445667762 4566999999999986 667655 34444 557778899999976
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK11556 multidrug efflux system subunit MdtA; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0011 Score=81.61 Aligned_cols=70 Identities=27% Similarity=0.383 Sum_probs=60.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
+...|.++++|.|.+++|++||.|++||+|+.|..-.
T Consensus 86 ~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~l 165 (415)
T PRK11556 86 NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQEL 165 (415)
T ss_pred eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 5678999999999999999999999999999995410
Q ss_pred ----------------------------ceeeeecCCCeEEEEEEecCCCeeCCCC--EEEEE
Q psy15244 1393 ----------------------------TETLIHASADGVVKEIFVEVGGQVAQND--LVVVL 1425 (1427)
Q Consensus 1393 ----------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~--~L~~i 1425 (1427)
-...|+||++|+|..+.+++|+.|..|+ .|+.|
T Consensus 166 d~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 166 DAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 1348999999999999999999999985 56554
|
|
| >PRK09859 multidrug efflux system protein MdtE; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=80.55 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=59.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--------------------------------------------
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-------------------------------------------- 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------------------------------------------- 1392 (1427)
...|.++.+|.|.++.|++||.|++||+|+.|+.-.
T Consensus 61 ~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d 140 (385)
T PRK09859 61 VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYD 140 (385)
T ss_pred EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence 457999999999999999999999999999997420
Q ss_pred ---------------------------ceeeeecCCCeEEEEEEecCCCeeCCCC--EEEEE
Q psy15244 1393 ---------------------------TETLIHASADGVVKEIFVEVGGQVAQND--LVVVL 1425 (1427)
Q Consensus 1393 ---------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~--~L~~i 1425 (1427)
-.+.|+||++|+|.+..+++|+.|..|+ +|+.|
T Consensus 141 ~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 202 (385)
T PRK09859 141 TARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV 202 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence 1258999999999999999999999984 57655
|
|
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0012 Score=56.30 Aligned_cols=32 Identities=38% Similarity=0.657 Sum_probs=30.4
Q ss_pred eeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1395 TLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1395 ~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.||.+|+|.+++|++|+.|++||+|++|+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld 34 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLD 34 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEEC
Confidence 57999999999999999999999999999986
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.03 Score=67.13 Aligned_cols=220 Identities=11% Similarity=0.054 Sum_probs=140.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccCh-HHHHHHHHHhCCCCceeeeeccc-----ccccccC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECP-WERLAELRELIPNIPFQMILRGN-----SLVGYSN 749 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p-~erl~~lr~~~p~~~~qml~Rg~-----n~vgy~~ 749 (1427)
..++.+++++.++.+.+ .|+..+-+.||...+. ..+- .+-++.+++..|++.+..+.++. ...|+.
T Consensus 70 ~~ls~eei~~~~~~~~~--~G~~~i~l~gG~~p~~-----~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~- 141 (340)
T TIGR03699 70 YVLSVEEILQKIEELVA--YGGTQILLQGGVNPDL-----GLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLS- 141 (340)
T ss_pred cCCCHHHHHHHHHHHHH--cCCcEEEEecCCCCCC-----CHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCC-
Confidence 35899999999999887 7999888876643221 1111 13456777777766654433220 001221
Q ss_pred CCcchHHHHHHHHHhcCCCEEEE--eccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRV--FDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~ri--f~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
.++.+++.+++|++.+.- ...++ +.+...++++.++++|+ .+...+.+. .
T Consensus 142 -----~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi---~v~~~~iiG-----l--- 205 (340)
T TIGR03699 142 -----LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGL---PTTATMMFG-----H--- 205 (340)
T ss_pred -----HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CccceeEee-----C---
Confidence 256688888999987652 12221 34456788999999999 555555444 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE----------cccc----CcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCL----------KDMA----GLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVA 880 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i----------~Dt~----G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~A 880 (1427)
.-+.+..++.+..+.+.+.+.+.+ ++|- ....|.+..+.+...|--+|+++ |..-. ...| ..
T Consensus 206 gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~g--~~ 282 (340)
T TIGR03699 206 VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQG--KE 282 (340)
T ss_pred CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-cccC--hH
Confidence 356777888888888887764221 2332 24678889999988888788632 22222 2233 33
Q ss_pred HHHHHHHhcCCEEEecc--ccCCCCCCCCc---HHHHHHHHHhCCCC
Q psy15244 881 TTLACVKAGADIVDVAA--DSMSGICSQPA---MGTIVSCLENTDKR 922 (1427)
Q Consensus 881 n~laAi~AGad~VD~av--~GmG~~tgn~~---lE~vv~~L~~~g~~ 922 (1427)
....|+.+||+-+++++ ..+--.+|.+. .++++.+++..|+.
T Consensus 283 ~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~g~~ 329 (340)
T TIGR03699 283 VGQLALHFGANDFGSTMLEENVVAAAGATHRASREEIIRIIREAGFI 329 (340)
T ss_pred HHHHHHhcCCccCCCccccccccccCCCCCCCCHHHHHHHHHHcCCC
Confidence 45678999999988877 35555566665 68888888887654
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0019 Score=67.27 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=56.4
Q ss_pred ceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCC
Q psy15244 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMP 1365 (1427)
Q Consensus 1286 ~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~ 1365 (1427)
.-.|.++|.|..|...++.||.+ .. |+.-..+|- -...+.|.||..
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V-----------~~-Gq~l~IiEA----------------------MKmeneI~A~~~ 115 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTV-----------KA-GQTLAIIEA----------------------MKMENEIEAPAD 115 (140)
T ss_pred CceEecCcceEEEEEeeccCCEE-----------cC-CCEEEEEEe----------------------eeccceecCCCC
Confidence 45789999999999999999997 33 332222220 014678999999
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
|+|.+|+|++||.|+.||+|++|+.
T Consensus 116 G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 116 GVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cEEEEEEecCCCccCCCCEEEEecC
Confidence 9999999999999999999999973
|
|
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0043 Score=72.74 Aligned_cols=44 Identities=30% Similarity=0.509 Sum_probs=25.5
Q ss_pred cEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCC
Q psy15244 210 PVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP 262 (1427)
Q Consensus 210 PvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIegg 262 (1427)
-+|+||..++.|+|++++++.+++... .......++||+||++|
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~P 110 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENP 110 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCC
Confidence 489999999999999999999887753 12236799999999975
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
| >TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.004 Score=70.00 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=57.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...-|+||.+|.+ +..++.||.|+|||+|+.++. ++|+||.+|+|. =.+..|-.|.+|.-|++|+
T Consensus 163 ~Er~IrAp~~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dID 227 (256)
T TIGR03309 163 HERVLRAPADGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVD 227 (256)
T ss_pred ceEEEECCCCeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEEC
Confidence 3456999999954 559999999999999999986 799999999988 5688999999999998875
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.12 Score=62.78 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=141.7
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhh-hhccccChHHHHHHHHHhCCCCceeeeec-----ccccccccC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTC-LKFLKECPWERLAELRELIPNIPFQMILR-----GNSLVGYSN 749 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~-~rfl~e~p~erl~~lr~~~p~~~~qml~R-----g~n~vgy~~ 749 (1427)
.+++.+++++.|+...+ .|+..+-+.||-..+-. ..++ .+.++.+++..|++.+.++.. ..+..|
T Consensus 89 y~ls~eeI~~~a~~a~~--~G~~~i~l~~G~~p~~~~~e~~----~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G--- 159 (371)
T PRK07360 89 FWLTIAEILEKAAEAVK--RGATEVCIQGGLHPAADSLEFY----LEILEAIKEEFPDIHLHAFSPMEVYFAAREDG--- 159 (371)
T ss_pred eeCCHHHHHHHHHHHHh--CCCCEEEEccCCCCCCCcHHHH----HHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC---
Confidence 46999999999999988 79999998776332111 1111 244667777777766554311 000112
Q ss_pred CCcchHHHHHHHHHhcCCCEEE--------------EeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFR--------------VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~r--------------if~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
...++.+++.+++|++.+. ++-..-+.+.-.++++.++++|+ .+..++.+. -
T Consensus 160 ---~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl---~~~sg~i~G----~---- 225 (371)
T PRK07360 160 ---LSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGL---PTTSTMMYG----H---- 225 (371)
T ss_pred ---CCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CceeeEEee----C----
Confidence 2235568888899999884 11112244566788999999999 666665554 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCE------EEE---------ccccCc---CCHHHHHHHHHHHHHHcCC--ceEEEeecCCc
Q psy15244 816 KYSLNYYEDLAKQLVESGAQV------LCL---------KDMAGL---LKPTAAKLLIGSFREKYPN--ILIHVHTHDMA 875 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~------i~i---------~Dt~G~---l~P~~~~~lv~~lr~~~p~--ipi~~H~Hnd~ 875 (1427)
.-+.+..++.+..+.+.+.+. |-+ .++..+ ..|.+..+.|...|=-+|+ +.|-.-. .++
T Consensus 226 gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~l 304 (371)
T PRK07360 226 VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW-VKL 304 (371)
T ss_pred CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc-eee
Confidence 257788888888888887655 322 232222 3677778888888877787 3343332 234
Q ss_pred chHHHHHHHHHHhcCCEEEecccc------CCCCCC-CCcHHHHHHHHHhCCCCC
Q psy15244 876 GTGVATTLACVKAGADIVDVAADS------MSGICS-QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD~av~G------mG~~tg-n~~lE~vv~~L~~~g~~t 923 (1427)
|.. ....|+.+||+.+.+++.+ -|..+. .++.+++...++..|+..
T Consensus 305 g~~--~~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~ 357 (371)
T PRK07360 305 GLK--LAQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGRIP 357 (371)
T ss_pred CHH--HHHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCCce
Confidence 433 3466899999999888754 222222 258899999999887653
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.1 Score=62.82 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=140.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc-----cccccccCC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG-----NSLVGYSNY 750 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg-----~n~vgy~~~ 750 (1427)
.+++.+++++.++.+.+ .|+..|=+.||..++....++ .+-++.|++..|+..+..+.+. ...+|.
T Consensus 68 y~ls~eeI~e~~~~~~~--~G~~~i~l~gG~~p~~~~~~~----~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~--- 138 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWK--AGATEVCIQGGIHPDLDGDFY----LDILRAVKEEVPGMHIHAFSPMEVYYGARNSGL--- 138 (343)
T ss_pred ccCCHHHHHHHHHHHHH--CCCCEEEEEeCCCCCCCHHHH----HHHHHHHHHHCCCceEEecCHHHHHHHHHHcCC---
Confidence 46899999999999888 699888776664322111111 2456778887777776554211 011222
Q ss_pred CcchHHHHHHHHHhcCCCEEEE--eccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRV--FDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~ri--f~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
...+.+++.+++|++.+.. ...++ ..+.-.++++.++++|+ .+...+.+. -+
T Consensus 139 ---~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi---~v~s~~i~G----~~---- 204 (343)
T TIGR03551 139 ---SVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGI---PTTATIMYG----HV---- 204 (343)
T ss_pred ---CHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---cccceEEEe----cC----
Confidence 2356688888999997752 12222 34455788999999999 665555543 22
Q ss_pred CCHHHHHHHHHHHHHCCCCE------EEEc----ccc--------CcCCHHHHHHHHHHHHHHcCCc--eEEEeecCCcc
Q psy15244 817 YSLNYYEDLAKQLVESGAQV------LCLK----DMA--------GLLKPTAAKLLIGSFREKYPNI--LIHVHTHDMAG 876 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~------i~i~----Dt~--------G~l~P~~~~~lv~~lr~~~p~i--pi~~H~Hnd~G 876 (1427)
-+.+..++.+..+.+++.+. +-+. .|- ..+.|.++.++|...|=-+|+. .|..-. .++|
T Consensus 205 Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~-~~l~ 283 (343)
T TIGR03551 205 ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW-VKLG 283 (343)
T ss_pred CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc-cccC
Confidence 45677777777777766542 2221 321 2357888999998888777864 444444 3445
Q ss_pred hHHHHHHHHHHhcCCEEEecccc-----CCCC-CC-CCcHHHHHHHHHhCCCCC
Q psy15244 877 TGVATTLACVKAGADIVDVAADS-----MSGI-CS-QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~G-----mG~~-tg-n~~lE~vv~~L~~~g~~t 923 (1427)
.. ....|+.+||+-+++|+.. ..|. ++ ..+.++++...+..|+.+
T Consensus 284 ~~--~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~ 335 (343)
T TIGR03551 284 KK--LAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP 335 (343)
T ss_pred HH--HHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 43 3478899999999988633 3332 21 236788998888877654
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.053 Score=62.01 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|.+ .|++.||+|-+.. -.++.|-|.. +-|+.++++|+. +++++-++
T Consensus 14 ~~e~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm------ 84 (250)
T PLN02591 14 DLDTTAEALRLLDA--CGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLF------ 84 (250)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEE------
Confidence 45778899999998 7999999985433 2223444443 357777888854 56665432
Q ss_pred ccccCCC-cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYS-PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~-~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|.. .-=+++|++.++++|+|-+-|-|- .++......+.+++.|+ . .|++. +| .++.+.+.
T Consensus 85 -~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--P~ee~~~~~~~~~~~gl---~---~I~lv----~P---tt~~~ri~ 148 (250)
T PLN02591 85 -TYYNPILKRGIDKFMATIKEAGVHGLVVPDL--PLEETEALRAEAAKNGI---E---LVLLT----TP---TTPTERMK 148 (250)
T ss_pred -ecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCC---e---EEEEe----CC---CCCHHHHH
Confidence 343321 113678999999999999988875 35888889999999998 2 23333 34 24455555
Q ss_pred HHHHHHHHCC-CCEEEEccccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEE
Q psy15244 824 DLAKQLVESG-AQVLCLKDMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~G-ad~i~i~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~V 893 (1427)
.+++.. .| +-.|+..-++|. ..|..+.++++.+|+.. ++||-+ -+|.. -.++-+..+.|||.|
T Consensus 149 ~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~v----GFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 149 AIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKPVAV----GFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred HHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence 554442 12 223334556665 45788999999999974 888765 23333 346667778889875
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.1 Score=57.60 Aligned_cols=172 Identities=20% Similarity=0.178 Sum_probs=112.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++..++++.|.+ ++..+|++.+ | ....-.+-++.+++..++.++-..+. ...++ ..
T Consensus 10 ~~~~~~~~~~~~l~~---~i~~ieig~~--~------~~~~g~~~i~~i~~~~~~~~i~~~~~-------v~~~~---~~ 68 (202)
T cd04726 10 LDLEEALELAKKVPD---GVDIIEAGTP--L------IKSEGMEAVRALREAFPDKIIVADLK-------TADAG---AL 68 (202)
T ss_pred CCHHHHHHHHHHhhh---cCCEEEcCCH--H------HHHhCHHHHHHHHHHCCCCEEEEEEE-------ecccc---HH
Confidence 567888999999998 4999999532 2 12333567888888877776544322 11222 34
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.++++|.|.+-+-...+. +.+...++.+++.|. .+...+. +| .|+....+ +...|+|.+
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~---~~~v~~~------~~----~t~~e~~~----~~~~~~d~v 130 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPL-STIKKAVKAAKKYGK---EVQVDLI------GV----EDPEKRAK----LLKLGVDIV 130 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCH-HHHHHHHHHHHHcCC---eEEEEEe------CC----CCHHHHHH----HHHCCCCEE
Confidence 678899999999887775543 667888999999988 4433211 22 44444432 566799988
Q ss_pred EEc-----cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 838 CLK-----DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 838 ~i~-----Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+- .+.| .....+.++.+++. +++||..=. |....|.-.++++|||.+=+.
T Consensus 131 ~~~~~~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 131 ILHRGIDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred EEcCcccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEEEEe
Confidence 772 2222 12344556666655 477776654 555678899999999987443
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.1 Score=59.78 Aligned_cols=185 Identities=18% Similarity=0.139 Sum_probs=115.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCc--------hhh-hhhccccChHHHHHHHHHhCCCCceeeeeccccccccc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAV--------SHT-CLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYS 748 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggat--------fd~-~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~ 748 (1427)
-+.++..+++..+++ . ++.||++-+.. +.. +.+.+...-++.++.+|+. .+.++-++..- .
T Consensus 15 p~~~~~~~~~~~l~~--~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~-~~~Pl~lM~y~------n 84 (244)
T PRK13125 15 PNVESFKEFIIGLVE--L-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD-VSVPIILMTYL------E 84 (244)
T ss_pred CCHHHHHHHHHHHHh--h-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc-CCCCEEEEEec------c
Confidence 466888999999988 5 99999974322 111 1222222224566777754 46665322211 1
Q ss_pred CCCcchHHHHHHHHHhcCCCEEEEeccC-ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHH
Q psy15244 749 NYSPAEVGAFCRLASQAGIDIFRVFDPL-NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827 (1427)
Q Consensus 749 ~~~~nvv~~~v~~a~~~Gid~~rif~~~-nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~ 827 (1427)
++-.+ ...|++.+.++|+|.+-+-+.. ...+.+...++.+++.|+ .+-..+ +| .++.+.+..+++
T Consensus 85 ~~~~~-~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl---~~~~~v-------~p---~T~~e~l~~~~~ 150 (244)
T PRK13125 85 DYVDS-LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGL---KPVFFT-------SP---KFPDLLIHRLSK 150 (244)
T ss_pred hhhhC-HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCC---CEEEEE-------CC---CCCHHHHHHHHH
Confidence 12222 5678999999999999887643 225678889999999999 443322 44 345555554444
Q ss_pred HHHHCCCCEEEE--ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcch-HHHHHHHHHHhcCCEEE
Q psy15244 828 QLVESGAQVLCL--KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGT-GVATTLACVKAGADIVD 894 (1427)
Q Consensus 828 ~l~~~Gad~i~i--~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~Gl-A~An~laAi~AGad~VD 894 (1427)
. .-..+++ .-..|.-.+..+.+.++.+|+..++.+|.+ +.|. ...++-.++++|||.+=
T Consensus 151 ~----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~~~gaD~vv 212 (244)
T PRK13125 151 L----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDALSAGADGVV 212 (244)
T ss_pred h----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHHHcCCCEEE
Confidence 3 3334432 222455567888899999998876666653 4566 44566677899999763
|
|
| >PRK07051 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0093 Score=56.09 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.4
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
...|.||.+|+|.++.+++|+.|+.||+|+.++
T Consensus 47 ~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 47 FTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 346899999999999999999999999999986
|
|
| >PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.00097 Score=73.05 Aligned_cols=50 Identities=32% Similarity=0.612 Sum_probs=41.0
Q ss_pred Cccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCcccc
Q psy15244 1121 EPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMAC 1171 (1427)
Q Consensus 1121 ~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~ 1171 (1427)
.+.| ++.+|||+|..+|.+.+++||+++.|||+.||.++++|||+. ++.+
T Consensus 137 ~dedvlsyal~P~v~~~f~~~~~~~g~~~~l~t~~~~~g~~~~ee~~-v~l~ 187 (196)
T PF02436_consen 137 TDEDVLSYALFPKVAEDFLKFRAKYGDVSVLPTPVFFYGLKPGEEIS-VELE 187 (196)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHS-GGCS-HHHHHHHH-TTEEEE-EESC
T ss_pred CHHHHHHHhcCchhHHHHHHHHHhcCCCCcCCchhhhcCCCCCeEEE-EEEC
Confidence 3345 778899999999999999999999999999999999999996 4444
|
4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B .... |
| >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.046 Score=57.80 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=53.7
Q ss_pred ceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCC
Q psy15244 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMP 1365 (1427)
Q Consensus 1286 ~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~ 1365 (1427)
...|.+++.|+..+|.++.||.+ .. |..-+.++.. .....|.||..
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V-----------~~-Gq~l~~iEam----------------------Kme~eI~Ap~~ 129 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQV-----------KV-GQGLLILEAM----------------------KMENEIPAPKD 129 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEE-----------cC-CCEEEEEeec----------------------ccceEEecCCC
Confidence 45789999999999999999997 22 3322222210 02357999999
Q ss_pred eEEEEEEecCCCEEecCCEEEEE
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
|+|.++++++||.|+.||+|+.|
T Consensus 130 G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 130 GVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred eEEEEEEcCCCCEECCCCEEEEe
Confidence 99999999999999999999986
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.27 Score=58.56 Aligned_cols=190 Identities=15% Similarity=0.135 Sum_probs=122.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.+++.+++++.++.+.+ .|+..+-+.||..+. +..+.-.+-++.+++. ++..+.+-+ | ...
T Consensus 68 ~~ls~eei~~~~~~~~~--~g~~~i~l~gG~~~~----~~~~~l~~l~~~i~~~-~~l~i~~~~------g------~~~ 128 (323)
T PRK07094 68 YRLSPEEILECAKKAYE--LGYRTIVLQSGEDPY----YTDEKIADIIKEIKKE-LDVAITLSL------G------ERS 128 (323)
T ss_pred cCCCHHHHHHHHHHHHH--CCCCEEEEecCCCCC----CCHHHHHHHHHHHHcc-CCceEEEec------C------CCC
Confidence 35789999999998887 799998887664211 1111112333444443 343332211 1 123
Q ss_pred HHHHHHHHhcCCCEEEE-eccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRV-FDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~ri-f~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...++|++.+.+ +.+.| +.+....+++.++++|. .+...+.+. -| ..+.+.+.
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi---~v~~~~iiG----lp---get~ed~~ 198 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGY---EVGSGFMVG----LP---GQTLEDLA 198 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC---eecceEEEE----CC---CCCHHHHH
Confidence 45688888999998876 34443 34567788999999999 666665554 45 46788999
Q ss_pred HHHHHHHHCCCCEEEEc------cc----cCcCCHHHHHHHHHHHHHHcCCceE----EEeecCCcchHHHHHHHHHHhc
Q psy15244 824 DLAKQLVESGAQVLCLK------DM----AGLLKPTAAKLLIGSFREKYPNILI----HVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~------Dt----~G~l~P~~~~~lv~~lr~~~p~ipi----~~H~Hnd~GlA~An~laAi~AG 889 (1427)
+.++.+.+.+++.+.+- .| .....+..+.+++..+|-.+|+..| .+-+|...| ...|+.+|
T Consensus 199 ~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~-----~~~~l~~G 273 (323)
T PRK07094 199 DDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDG-----REKGLKAG 273 (323)
T ss_pred HHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchh-----HHHHHHcC
Confidence 99999999998866541 11 0124567788889999988887444 333343322 24899999
Q ss_pred CCEEEecccc
Q psy15244 890 ADIVDVAADS 899 (1427)
Q Consensus 890 ad~VD~av~G 899 (1427)
|+.+=.++.+
T Consensus 274 an~~~~~~~~ 283 (323)
T PRK07094 274 ANVVMPNLTP 283 (323)
T ss_pred CceecCCCCc
Confidence 9988665533
|
|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=72.61 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
....|.||.+|.|.+++|++||.|++||+|+.++
T Consensus 42 ~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 42 NVKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred CeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 4566889999999999999999999999999984
|
Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. |
| >PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0076 Score=55.78 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=48.5
Q ss_pred ccCCCCCccee------eeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceec
Q psy15244 1289 LNGPNIGEEFS------CEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGA 1362 (1427)
Q Consensus 1289 v~~~~~g~~~~------~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~A 1362 (1427)
+..|+.|..++ |.++.|+.+ .. |..-..++.+.. ...|.|
T Consensus 3 i~~P~~G~~~~~~~i~~~~v~~G~~V-----------~~-G~~l~~iet~K~----------------------~~~v~a 48 (74)
T PF00364_consen 3 IKAPMLGEVMEEGTITKWLVEEGDKV-----------KK-GDPLAEIETMKM----------------------EMEVEA 48 (74)
T ss_dssp EEESSSSEEEEEEEEEEESSSTTEEE-----------ST-TSEEEEEESSSE----------------------EEEEEB
T ss_pred EECCCCccEEEecceeEEEECCCCEE-----------Ec-CceEEEEEcCcc----------------------ceEEEC
Confidence 34556666666 888888886 22 444444443322 347899
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
|.+|+|.++++++||.|..||+|+.|
T Consensus 49 ~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 49 PVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CCCEEEEEEEECCCCEECCCCEEEEC
Confidence 99999999999999999999999986
|
Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A .... |
| >TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0078 Score=71.69 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=30.7
Q ss_pred CceecCCC---eEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1358 GEIGAPMP---GNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1358 ~~V~APm~---G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
..|.++.+ |+|.+|+|++||.|++||+|+.|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 46889999 9999999999999999999999985
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members. |
| >PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.071 Score=61.97 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=127.6
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEF 203 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~ 203 (1427)
+-+.+.++....--||-....+-++-....++++ ++... .-.+- ...++.+..=-+.||+ .+.|.+++..+
T Consensus 59 ~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~a~--aP~GW---~~~fa~~~~~~vL~G~--tvFs~~DA~~A 129 (355)
T PF11379_consen 59 AQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPDAA--APAGW---SPAFAERVRDAVLPGY--TVFSREDARRA 129 (355)
T ss_pred hHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCCCC--CCCCc---CHHHHHHHhhhccCCc--cccCHHHHHHH
Confidence 5677777765554555555555445555555553 33221 11222 2223333333356776 68899999888
Q ss_pred HHhc--CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEee
Q psy15244 204 CDEV--EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLY 281 (1427)
Q Consensus 204 a~~i--GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~ 281 (1427)
+..+ +-||-+||..+.||+|..++.+.++|+.+++..-..... ...+++|+-|+...-+||.-+.-+ |..+..+
T Consensus 130 ~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~ 205 (355)
T PF11379_consen 130 ARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRVA-GLVASYY 205 (355)
T ss_pred HHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEEC-CEEEEEe
Confidence 8765 679999999999999999999999999999875443332 357999999998888888766543 3455554
Q ss_pred eeccccccccc-eEEEEc------------cCCCCCHHHHHHHHHHHH-HHHHHcCCCCe----EEEEEE--EcCCCcEE
Q psy15244 282 ERDCSMQRRYQ-KVIQIA------------PAQDMSVSVRDAITETSV-RLAKSLGYSNA----GTVEFL--LDKDDNFY 341 (1427)
Q Consensus 282 erd~s~qr~~q-k~ie~a------------Pa~~l~~e~~~~l~~~a~-~l~~alg~~G~----~~VEfl--vd~dG~~y 341 (1427)
...|....++. ++-..+ -...+++..+..|..... ..+-.-.|-|. -+-|.. .|..|.+.
T Consensus 206 GtQ~lT~dn~G~~VYGGS~L~VvRGg~~aLl~l~l~~~~r~AV~qA~~Yd~Aa~~~yPgf~ASRRNYDVa~G~da~G~~r 285 (355)
T PF11379_consen 206 GTQRLTRDNQGEEVYGGSDLVVVRGGFDALLALDLPDDVRLAVEQARAYDAAAQACYPGFFASRRNYDVAQGLDAQGRWR 285 (355)
T ss_pred eEeecccCCCCCEeecCceEEEEeCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCchhheeeccceeeeccCCCCCee
Confidence 44444444332 221111 022466666655543322 11111122221 123333 24455543
Q ss_pred --EEeeCCCCCCc
Q psy15244 342 --FIEVNPRLQVE 352 (1427)
Q Consensus 342 --fIEINpRl~ge 352 (1427)
++|=.=|++|.
T Consensus 286 ~GVLEQSWRvGGA 298 (355)
T PF11379_consen 286 SGVLEQSWRVGGA 298 (355)
T ss_pred eceeeeeeccCCC
Confidence 89999999874
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.23 Score=59.93 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=140.2
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc-----cccccccC
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG-----NSLVGYSN 749 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg-----~n~vgy~~ 749 (1427)
..+++.+++++.++...+ .|+..+-+-+|-.++..+ +.-.+.++.+++..|++.+..+... .+..|
T Consensus 76 ~y~l~~eeI~~~a~~~~~--~G~~~v~l~~G~~p~~~~----~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g--- 146 (351)
T TIGR03700 76 AYAMSLEEIVARVKEAYA--PGATEVHIVGGLHPNLPF----EWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISG--- 146 (351)
T ss_pred cCCCCHHHHHHHHHHHHH--CCCcEEEEecCCCCCCCH----HHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcC---
Confidence 345899999999998887 799888776664432111 1123456778888888876654221 00111
Q ss_pred CCcchHHHHHHHHHhcCCCEEEE--eccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRV--FDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~ri--f~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
...++.+++.+++|+|.+.- .-+.+ +.+...++++.++++|+ .+..++.+. -
T Consensus 147 ---~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi---~~~sg~i~G----l---- 212 (351)
T TIGR03700 147 ---LPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGL---KTNATMLYG----H---- 212 (351)
T ss_pred ---CCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC---CcceEEEee----C----
Confidence 12345577888899987751 22221 34555678999999999 666666655 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCE------EEE----cccc------CcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQV------LCL----KDMA------GLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTG 878 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~------i~i----~Dt~------G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA 878 (1427)
.-+.+..++.+..+.+.+.+. |-+ .+|- ..+.|.+....+...|=-+|+++ |-. .-...|.
T Consensus 213 gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a-~w~~~~~- 290 (351)
T TIGR03700 213 IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKA-YWVMLGL- 290 (351)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccc-cccccCH-
Confidence 256777777777777776643 444 2442 34678888888888876666533 111 1112243
Q ss_pred HHHHHHHHHhcCCEEEecccc--CC---C-CCC-CCcHHHHHHHHHhCCCCC
Q psy15244 879 VATTLACVKAGADIVDVAADS--MS---G-ICS-QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 879 ~An~laAi~AGad~VD~av~G--mG---~-~tg-n~~lE~vv~~L~~~g~~t 923 (1427)
.....++.+||+=+++|+.. +. | ..+ .++.+++...++..|+.+
T Consensus 291 -~~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p 341 (351)
T TIGR03700 291 -KLAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVP 341 (351)
T ss_pred -HHHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHcCCCe
Confidence 35588999999999877642 11 1 222 467899999888776543
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.013 Score=57.56 Aligned_cols=46 Identities=35% Similarity=0.345 Sum_probs=39.3
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecC
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~ 1412 (1427)
|.-.+..|++||.|++||.|+.-+. -+...|.||++|+|+.|.-..
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~ 84 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRP 84 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeE
Confidence 3445889999999999999999986 668999999999999886433
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.34 Score=53.75 Aligned_cols=194 Identities=17% Similarity=0.141 Sum_probs=117.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
++.++.+++++.+ . .|++.||++-. +..+...+-++.||+..|+..+-.-+.=. -|++ .
T Consensus 9 ~~~~~a~~~~~~l-~--~~v~~iev~~~--------l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-------d~~~---~ 67 (206)
T TIGR03128 9 LDIEEALELAEKV-A--DYVDIIEIGTP--------LIKNEGIEAVKEMKEAFPDRKVLADLKTM-------DAGE---Y 67 (206)
T ss_pred CCHHHHHHHHHHc-c--cCeeEEEeCCH--------HHHHhCHHHHHHHHHHCCCCEEEEEEeec-------cchH---H
Confidence 5678899999999 5 59999999522 12233356788898887754432111000 1222 1
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.+.++|.|.+-+- ......++...++.+++.|. .+...++ +| .+ ..+.++.+.+.|+|.+
T Consensus 68 ~~~~~~~~Gad~i~vh-~~~~~~~~~~~i~~~~~~g~---~~~~~~~------~~----~t---~~~~~~~~~~~g~d~v 130 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-GVADDATIKGAVKAAKKHGK---EVQVDLI------NV----KD---KVKRAKELKELGADYI 130 (206)
T ss_pred HHHHHHHcCCCEEEEe-ccCCHHHHHHHHHHHHHcCC---EEEEEec------CC----CC---hHHHHHHHHHcCCCEE
Confidence 3788899999987644 33444567888999999998 5544321 23 11 3344556677899998
Q ss_pred EEcc-ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 838 CLKD-MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 838 ~i~D-t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
.+-= ..|-.......+.++.+++.++..+|.+ +-|....|.-..+++||+.+-+.-+= ...++..+.+..|
T Consensus 131 ~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v----~GGI~~~n~~~~~~~Ga~~v~vGsai----~~~~d~~~~~~~l 202 (206)
T TIGR03128 131 GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAV----AGGINLDTIPDVIKLGPDIVIVGGAI----TKAADPAEAARQI 202 (206)
T ss_pred EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEE----ECCcCHHHHHHHHHcCCCEEEEeehh----cCCCCHHHHHHHH
Confidence 7731 0011111112345667777665555432 34666778889999999988543222 2334555666555
Q ss_pred H
Q psy15244 917 E 917 (1427)
Q Consensus 917 ~ 917 (1427)
+
T Consensus 203 ~ 203 (206)
T TIGR03128 203 R 203 (206)
T ss_pred H
Confidence 4
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0034 Score=74.31 Aligned_cols=34 Identities=35% Similarity=0.580 Sum_probs=24.7
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.||.+|.| +++|++||.|++||+|+.++.
T Consensus 20 ~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 3567999999999 999999999999999999964
|
... |
| >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.019 Score=58.97 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=54.9
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....+.+++.|+..+|.+..|+.+ .. |..-+.++-. .....|.||.
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V-----------~~-Gq~L~~lEam----------------------Kme~eI~Ap~ 105 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQV-----------TE-NQPLLILEAM----------------------KMENEIVASS 105 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEE-----------CC-CCEEEEEecc----------------------CccEEEEcCC
Confidence 466799999999999999999987 22 3322222210 1356899999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
.|+|.+++|++||.|+.||+|+.|
T Consensus 106 ~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 106 AGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CeEEEEEEeCCCCEeCCCCEEEEe
Confidence 999999999999999999999986
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.2 Score=57.80 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=108.9
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCCEEEEcc-cc--C--cCCHH-H---HHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 814 KKK-YSLNYYEDLAKQLVESGAQVLCLKD-MA--G--LLKPT-A---AKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 814 ~~~-~~~~~~~~~a~~l~~~Gad~i~i~D-t~--G--~l~P~-~---~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
.++ .+++..++.+++..+.|||.|-|.- +. | ...|+ + +..+|+.+++.+ ++||.+|+++ ...+.
T Consensus 16 g~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~-----~~vi~ 89 (257)
T TIGR01496 16 GGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYR-----AEVAR 89 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCC-----HHHHH
Confidence 445 4789999999999999999999941 11 0 11222 3 666778888777 8999999999 45556
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC------CCC-------------ChhhHHHHHHHHHHHhCCC
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR------CGI-------------DLHDVCDYSSYWRKVRELY 944 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~------tgi-------------dl~~L~~l~~~v~~~~g~~ 944 (1427)
+|+++|+++|+-.- |. . .+++...+++.|.. .++ -.+.+..+.+.++.....-
T Consensus 90 ~al~~G~~iINsis-~~---~----~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G 161 (257)
T TIGR01496 90 AALEAGADIINDVS-GG---Q----DPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAG 161 (257)
T ss_pred HHHHcCCCEEEECC-CC---C----CchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 88889999987552 22 1 23344444443211 011 0113333445555555555
Q ss_pred CCCCCcccccch-hhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCC-------ccHHHHHHHHHHCCC---C
Q psy15244 945 APAHNLLWRCGI-DLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPG-------GQYTNLKFRTMSFGL---D 1013 (1427)
Q Consensus 945 ~~~~kpivG~~~-f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pG-------g~~snl~~ql~~~gl---~ 1013 (1427)
++.+.+++--++ |... ..++-.+.+.-+.+..+..|-+.|.++.-+++..-| +....+...+.++|. |
T Consensus 162 i~~~~iilDPg~gf~ks-~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~Ga~iiR 240 (257)
T TIGR01496 162 VAAERIILDPGIGFGKT-PEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGTPPEERLEGTLAASAYAVQKGADIVR 240 (257)
T ss_pred CCHHHEEEECCCCcccC-HHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcCCChhhhhHHHHHHHHHHHHcCCCEEE
Confidence 666775554433 5442 333333333323333233355666655555443322 112234455667777 5
Q ss_pred HHHHHHHHH
Q psy15244 1014 FEDVKRAYR 1022 (1427)
Q Consensus 1014 ~~ev~~~~~ 1022 (1427)
-.+|.+...
T Consensus 241 ~Hdv~~~~~ 249 (257)
T TIGR01496 241 VHDVKETRD 249 (257)
T ss_pred eCCHHHHHH
Confidence 555555443
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.091 Score=59.98 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=134.7
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCC--------chhh-hhhccc-----cChH
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA--------VSHT-CLKFLK-----ECPW 720 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~gga--------tfd~-~~rfl~-----e~p~ 720 (1427)
+.++-.|.=.|+=|- +.+.-+++++.|.+ .|.+.||.|-+. +... ..|-|+ ++-|
T Consensus 14 ~~~~a~i~yit~GdP---------~~e~s~e~i~~L~~--~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~l 82 (265)
T COG0159 14 ENRGALIPYVTAGDP---------DLETSLEIIKTLVE--AGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTL 82 (265)
T ss_pred hCCCCeEEEEeCCCC---------CHHHHHHHHHHHHh--CCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHH
Confidence 344455555555552 34778899999988 799999998432 2222 244444 4668
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCC-CcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEE
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNY-SPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~-~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v 799 (1427)
+-++++|+..+++++.++. |-|. -..=++.|++.++++|+|-+-|.|--- +.-....+.+++.|+
T Consensus 83 el~~~~r~~~~~~Pivlm~-------Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~--ee~~~~~~~~~~~gi----- 148 (265)
T COG0159 83 ELVEEIRAKGVKVPIVLMT-------YYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP--EESDELLKAAEKHGI----- 148 (265)
T ss_pred HHHHHHHhcCCCCCEEEEE-------eccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh--HHHHHHHHHHHHcCC-----
Confidence 8889999888999977654 3332 122367899999999999999888643 344456667778888
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEccccCcCCH--HHHHHHHHHHHHHcCCceEEEeecCCcc
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG-AQVLCLKDMAGLLKP--TAAKLLIGSFREKYPNILIHVHTHDMAG 876 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G-ad~i~i~Dt~G~l~P--~~~~~lv~~lr~~~p~ipi~~H~Hnd~G 876 (1427)
..|... +| .++.+.+.++++... | +--++..=++|.-.| ..+.++|+.+|+.. ++|+.+ |
T Consensus 149 -~~I~lv----aP---tt~~~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v------G 211 (265)
T COG0159 149 -DPIFLV----AP---TTPDERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLV------G 211 (265)
T ss_pred -cEEEEe----CC---CCCHHHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEE------e
Confidence 123333 55 355555555444332 3 334555566777776 33899999999988 899876 5
Q ss_pred hHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC
Q psy15244 877 TGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT 919 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~ 919 (1427)
.|+.+--.+.+.+.- .|+.+-|- .+|..++..
T Consensus 212 FGIs~~e~~~~v~~~-ADGVIVGS----------AiV~~i~~~ 243 (265)
T COG0159 212 FGISSPEQAAQVAEA-ADGVIVGS----------AIVKIIEEG 243 (265)
T ss_pred cCcCCHHHHHHHHHh-CCeEEEcH----------HHHHHHHhc
Confidence 555544444443322 34445442 477776653
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.38 Score=58.00 Aligned_cols=244 Identities=11% Similarity=0.069 Sum_probs=149.0
Q ss_pred CeEEeecCc---ccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 658 HILLTDTTF---RDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 658 ~v~i~DtTl---RDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
++-..||.+ |-..+..-+..++.+++++.|+...+ .|+..+=+-||-..+..+.+. .+.++.+++..|++.
T Consensus 57 N~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~--~G~~ei~iv~G~~p~~~~e~y----~e~ir~Ik~~~p~i~ 130 (353)
T PRK08444 57 NICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK--RGIKEVHIVSAHNPNYGYEWY----LEIFKKIKEAYPNLH 130 (353)
T ss_pred cccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH--CCCCEEEEeccCCCCCCHHHH----HHHHHHHHHHCCCce
Confidence 344455544 33333444567999999999999888 799988876654332211111 245677888888887
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEE-----e--------cc-CChHHHHHHHHHHHHHhcCCCcEEE
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV-----F--------DP-LNSVPNLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~ri-----f--------~~-~nd~~~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+..+..+- +.-......-..++.+++.+++|+|.+.- | .+ -.+.+.....++.|+++|+ .+.
T Consensus 131 i~a~s~~E-i~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi---~~~ 206 (353)
T PRK08444 131 VKAMTAAE-VDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGK---MSN 206 (353)
T ss_pred EeeCCHHH-HHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCC---Ccc
Confidence 76543221 00000001122556778888999985432 1 11 1133566778899999999 677
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE------EEE----cccc----CcCCHHHHHHHHHHHHHHcCCce
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV------LCL----KDMA----GLLKPTAAKLLIGSFREKYPNIL 866 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~------i~i----~Dt~----G~l~P~~~~~lv~~lr~~~p~ip 866 (1427)
.++.|. - .-+++..++.+..+.+...+. |-+ +.|- ..++|.+..+++...|=-+|++|
T Consensus 207 sg~l~G----~----gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ 278 (353)
T PRK08444 207 ATMLFG----H----IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNIP 278 (353)
T ss_pred ceeEEe----c----CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 777776 2 256677777777777765442 333 4441 24677888887777776666552
Q ss_pred EEEeecCC-cchHHHHHHHHHHhcCCEEEecc-----ccCCC-CCC-CCcHHHHHHHHHhCCCC
Q psy15244 867 IHVHTHDM-AGTGVATTLACVKAGADIVDVAA-----DSMSG-ICS-QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 867 i~~H~Hnd-~GlA~An~laAi~AGad~VD~av-----~GmG~-~tg-n~~lE~vv~~L~~~g~~ 922 (1427)
|..-. .-++...+..|+.+||+=+++|+ ....| .++ .++.+++...++..|+.
T Consensus 279 ---ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~ 339 (353)
T PRK08444 279 ---HIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI 339 (353)
T ss_pred ---ccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence 21111 12456777889999999998886 33333 333 46789999999877654
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.25 Score=56.95 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---------hhhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---------SHTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---------fd~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|.+ .|++.||+|-|.. -+++.|.|.. +-++.++++|+..+++++-.+
T Consensus 24 ~~~~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm------ 95 (258)
T PRK13111 24 DLETSLEIIKALVE--AGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM------ 95 (258)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE------
Confidence 45778899999998 7999999996542 2333444433 336777888866677875432
Q ss_pred ccccCCCcc-hHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYSPA-EVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~~n-vv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|-.-. =+++|++.++++|+|.+-|-|- .++..+..++.+++.|+ .. |.+. +| .++.+.+.
T Consensus 96 -~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL--p~ee~~~~~~~~~~~gl---~~---I~lv----ap---~t~~eri~ 159 (258)
T PRK13111 96 -TYYNPIFQYGVERFAADAAEAGVDGLIIPDL--PPEEAEELRAAAKKHGL---DL---IFLV----AP---TTTDERLK 159 (258)
T ss_pred -ecccHHhhcCHHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHHHHcCC---cE---EEEe----CC---CCCHHHHH
Confidence 34331111 2678999999999999999654 35788899999999998 22 2222 44 23444444
Q ss_pred HHHHHHHHCCCCEEEE---ccccCc--CCHHHHHHHHHHHHHHcCCceEEE
Q psy15244 824 DLAKQLVESGAQVLCL---KDMAGL--LKPTAAKLLIGSFREKYPNILIHV 869 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i---~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~ 869 (1427)
.+++. .-.-|++ .=++|. ..|....++++.+|+.. ++||-+
T Consensus 160 ~i~~~----s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~v 205 (258)
T PRK13111 160 KIASH----ASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAV 205 (258)
T ss_pred HHHHh----CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEE
Confidence 44333 3344544 334554 55677899999999976 788654
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.45 Score=57.33 Aligned_cols=226 Identities=8% Similarity=0.032 Sum_probs=134.7
Q ss_pred CCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccc-ccccccCCCc
Q psy15244 674 LATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGN-SLVGYSNYSP 752 (1427)
Q Consensus 674 ~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~-n~vgy~~~~~ 752 (1427)
....++.+++++.++...+ .|...|=+-||-.++..+.++ -+-++.|++..|+..+..+.++. ..+. ..-.
T Consensus 69 ~~y~l~~eeI~~~~~~a~~--~g~~~i~~~gg~~~~~~~e~~----~~l~~~Ik~~~p~i~~~a~s~~ei~~~a--~~~~ 140 (348)
T PRK08445 69 DAYILSFEEIDKKIEELLA--IGGTQILFQGGVHPKLKIEWY----ENLVSHIAQKYPTITIHGFSAVEIDYIA--KISK 140 (348)
T ss_pred CCeeCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCCCHHHH----HHHHHHHHHHCCCcEEEEccHHHHHHHH--HHhC
Confidence 3456799999999999888 688766444444332222121 23456788888887765443320 0000 0000
Q ss_pred chHHHHHHHHHhcCCCEEE-E-eccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFR-V-FDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYS 818 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~r-i-f~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~ 818 (1427)
-..++.+++.+++|++.+. + .-++++ .+.-.++++.++++|+ .+..++.|. - .-+
T Consensus 141 ~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi---~~~sg~i~G----~----~Et 209 (348)
T PRK08445 141 ISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGM---KSTATMMFG----T----VEN 209 (348)
T ss_pred CCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---eeeeEEEec----C----CCC
Confidence 0124568888999999763 4 444442 2345688999999999 777776665 1 245
Q ss_pred HHHHHHHHHHHHHCCCC-----EEE-----Ecccc--------CcCCHHHHHHHHHHHHHHcCCc-eEEEeecCCcchHH
Q psy15244 819 LNYYEDLAKQLVESGAQ-----VLC-----LKDMA--------GLLKPTAAKLLIGSFREKYPNI-LIHVHTHDMAGTGV 879 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad-----~i~-----i~Dt~--------G~l~P~~~~~lv~~lr~~~p~i-pi~~H~Hnd~GlA~ 879 (1427)
.+..++.+..+.+.+.+ .+- -.+|- .-++|.+..+++...|=-+|++ .|-.-. -..|..+
T Consensus 210 ~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~~~g~~~ 288 (348)
T PRK08445 210 DEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-VTQGSYI 288 (348)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-cccCHHH
Confidence 66666666666655432 221 12221 1377788888887777666652 122222 2445544
Q ss_pred HHHHHHHHhcCCEEEeccc-----cCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 880 ATTLACVKAGADIVDVAAD-----SMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~-----GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
+..|+.+||+-+++|+. ..+|.+...+.++++.+.+..|+
T Consensus 289 --~~~~L~~Gand~~gt~~~e~i~~~ag~~~~~~~~~~~~~i~~~g~ 333 (348)
T PRK08445 289 --GQLALLFGANDLGSTMMEENVVKAAGASFRMNQAEMIELIKDIGE 333 (348)
T ss_pred --HHHHHhcCCccCccccccccchhccCCCCCCCHHHHHHHHHHcCC
Confidence 47889999999999873 23332222356888888887664
|
|
| >PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.014 Score=59.38 Aligned_cols=46 Identities=30% Similarity=0.450 Sum_probs=35.7
Q ss_pred eEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEec
Q psy15244 1366 GNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411 (1427)
Q Consensus 1366 G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~ 1411 (1427)
|.|+.+.. +.|+.+++|++++.||+.|...++.||++|+|.+++-+
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 56666655 45999999999999999999999999999999988644
|
GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B .... |
| >PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.029 Score=63.21 Aligned_cols=76 Identities=25% Similarity=0.290 Sum_probs=58.7
Q ss_pred hcccccceeccCCCCCccee-------eeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccC
Q psy15244 1280 LRLKSERIFLNGPNIGEEFS-------CEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKA 1352 (1427)
Q Consensus 1280 ~~~~s~~v~v~~~~~g~~~~-------~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a 1352 (1427)
+...+....|.++|.|..|. |.++.||.+ .. |..-..+|-+-
T Consensus 191 ~~~~s~~~~V~APmaGtf~r~p~pge~w~VkvGDsV-----------kk-GQvLavIEAMK------------------- 239 (274)
T PLN02983 191 KAPKSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKV-----------QK-GQVVCIIEAMK------------------- 239 (274)
T ss_pred CCCcCCCCeEeCCcCeEEEeccCCCCcceeCCCCEe-----------cC-CCEEEEEEeec-------------------
Confidence 34577778899999999999 677888876 22 44333333221
Q ss_pred CCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1353 DSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1353 ~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
....|.||..|+|.++++++||.|..||+|++||
T Consensus 240 ---meieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 240 ---LMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred ---eeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 2357899999999999999999999999999986
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.63 Score=54.43 Aligned_cols=207 Identities=16% Similarity=0.151 Sum_probs=122.4
Q ss_pred CccEEeccCCCchhhhhhccc--cChH-HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEE
Q psy15244 696 NLYSLEMWGGAVSHTCLKFLK--ECPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRV 772 (1427)
Q Consensus 696 G~~~iE~~ggatfd~~~rfl~--e~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~ri 772 (1427)
||..|=+.|.+ +..++.+-. --+| |.+..++...+.+.+-...-..+. | -+.| +...+++..++|+.-+.|
T Consensus 38 Gf~ai~~ss~~-~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g---~~~~-v~r~V~~l~~aGvaGi~i 111 (285)
T TIGR02320 38 GFDGIWSSSLT-DSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-G---NFEH-FRRLVRKLERRGVSAVCI 111 (285)
T ss_pred CcCEEEechHH-HHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-C---CHHH-HHHHHHHHHHcCCeEEEE
Confidence 77777654422 222222211 1123 344445444443333333333322 2 4555 566788899999999999
Q ss_pred eccC----------------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 773 FDPL----------------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 773 f~~~----------------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
=|.. -+.+.+..-|++++++... ....|.-..| -.......+..++-++...++|||.
T Consensus 112 EDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~---~~~~IiARTD---a~~~~~~~~eAi~Ra~ay~eAGAD~ 185 (285)
T TIGR02320 112 EDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTT---EDFMIIARVE---SLILGKGMEDALKRAEAYAEAGADG 185 (285)
T ss_pred eccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccC---CCeEEEEecc---cccccCCHHHHHHHHHHHHHcCCCE
Confidence 5532 2456666777777766321 1122222212 1111346889999999999999999
Q ss_pred EEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 837 i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
|.+. .+..+++++.++++.++..+|++|+-+.. ...+.- +.-.--+.|++.|-.....+ ++-.-++++.+..+
T Consensus 186 ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~lG~~~v~~~~~~~--~aa~~a~~~~~~~~ 258 (285)
T TIGR02320 186 IMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDAGISVVIYANHLL--RAAYAAMQQVAERI 258 (285)
T ss_pred EEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHcCCCEEEEhHHHH--HHHHHHHHHHHHHH
Confidence 9986 44688999999999999888888985433 222221 34455678999985544333 44444566666666
Q ss_pred HhCCC
Q psy15244 917 ENTDK 921 (1427)
Q Consensus 917 ~~~g~ 921 (1427)
...|.
T Consensus 259 ~~~g~ 263 (285)
T TIGR02320 259 LEHGR 263 (285)
T ss_pred HHcCC
Confidence 65543
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.45 Score=57.35 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=138.5
Q ss_pred CcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 665 TFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 665 TlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
.+|...++..+..++.+++++.++.... .|+..+=+.||-..+..+.|+ .+.++.+++..|++.+..+... .+
T Consensus 63 af~~~~~~~~~y~ls~eei~~~a~~~~~--~G~~~i~i~gG~~p~~~~e~~----~~~i~~ik~~~p~l~~~~~s~~-ei 135 (350)
T PRK05927 63 AFYRKPHSSDAYLLSFDEFRSLMQRYVS--AGVKTVLLQGGVHPQLGIDYL----EELVRITVKEFPSLHPHFFSAV-EI 135 (350)
T ss_pred CccCCCCCccccccCHHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCHHHH----HHHHHHHHHHCCCCcccCCCHH-HH
Confidence 4555444444457999999999999888 699887777775433221111 2345667777776643111000 00
Q ss_pred ccccCCCcchHHHHHHHHHhcCCCEEE-------------EeccCC-hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCC
Q psy15244 745 VGYSNYSPAEVGAFCRLASQAGIDIFR-------------VFDPLN-SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLT 810 (1427)
Q Consensus 745 vgy~~~~~nvv~~~v~~a~~~Gid~~r-------------if~~~n-d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~ 810 (1427)
.-.....-...++.+++..++|++.+. +..+-. +.+.=.+.++.|++.|+ .+..++.|..
T Consensus 136 ~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi---~~~sg~l~G~--- 209 (350)
T PRK05927 136 AHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGF---RSTATMMFGH--- 209 (350)
T ss_pred HHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCC---CcCceeEEee---
Confidence 000000122346667888899997433 111212 23555678899999999 6666666662
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCC---CEE-EEc------ccc-C-----cCCHHHHHHHHHHHHHHcCCceEEEeecCC
Q psy15244 811 NPNKKKYSLNYYEDLAKQLVESGA---QVL-CLK------DMA-G-----LLKPTAAKLLIGSFREKYPNILIHVHTHDM 874 (1427)
Q Consensus 811 ~p~~~~~~~~~~~~~a~~l~~~Ga---d~i-~i~------Dt~-G-----~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd 874 (1427)
.-+.+..++.+..+.+.+- ... -|+ +|- + -++|.+..+++...|--+|++++ +-+ .-
T Consensus 210 -----gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~-i~~-~w 282 (350)
T PRK05927 210 -----VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH-IAA-SW 282 (350)
T ss_pred -----CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc-ccC-Cc
Confidence 2355555555555555431 111 133 342 1 37788888888888877887662 222 12
Q ss_pred cchHHHHHHHHHHhcCCEEEecc-----ccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 875 AGTGVATTLACVKAGADIVDVAA-----DSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD~av-----~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
..+|...+..|+.+||+-+++++ +...+.+...+.+++...++..|+.
T Consensus 283 ~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~~~~~~l~~~i~~~G~~ 335 (350)
T PRK05927 283 FGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQSSEEEICAMILSEGFI 335 (350)
T ss_pred cccCHHHHHHHHhCCCccccCCCccceeeccCCCCCcCCHHHHHHHHHHcCCC
Confidence 23455566789999999999877 2222222222678888888877654
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.22 Score=61.95 Aligned_cols=30 Identities=53% Similarity=0.766 Sum_probs=27.0
Q ss_pred eEeecccccccchhhhhccccccccccccc
Q psy15244 615 VLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
+.|+|||+||++||+.+++.++-|.+.++.
T Consensus 3 V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~ 32 (467)
T PRK14041 3 VMFVDTTLRDGHQSLIATRMRTEDMLPALE 32 (467)
T ss_pred eEEEECCCCccccCcCCccCCHHHHHHHHH
Confidence 789999999999999999999999887643
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.26 Score=56.33 Aligned_cols=181 Identities=17% Similarity=0.094 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc---hh------hhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV---SH------TCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat---fd------~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+...+.++.|.+ .|++.||++-+.+ .| .+.|-|.. .-++-++.+|+.. ++++.++.--
T Consensus 12 ~~~~~~~~~~~l~~--~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~--- 85 (242)
T cd04724 12 DLETTLEILKALVE--AGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYY--- 85 (242)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEec---
Confidence 44678889999998 7999999984331 11 12222221 3366677777765 5664433211
Q ss_pred ccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 745 VGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 745 vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
.++-.+=+..|++.++++|++.+-+.|- ..+.+...++.+++.|. ..... . +| .++.+.+..
T Consensus 86 ---n~~~~~G~~~fi~~~~~aG~~giiipDl--~~ee~~~~~~~~~~~g~---~~i~~---i----~P---~T~~~~i~~ 147 (242)
T cd04724 86 ---NPILQYGLERFLRDAKEAGVDGLIIPDL--PPEEAEEFREAAKEYGL---DLIFL---V----AP---TTPDERIKK 147 (242)
T ss_pred ---CHHHHhCHHHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHHHHcCC---cEEEE---e----CC---CCCHHHHHH
Confidence 1111112577999999999999888764 24688889999999998 33222 1 44 244444444
Q ss_pred HHHHHHHCCCCE---EEEccccCcCC--HHHHHHHHHHHHHHcCCceEEEeecCCcchHHH-HHHHHHHhcCCEE
Q psy15244 825 LAKQLVESGAQV---LCLKDMAGLLK--PTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA-TTLACVKAGADIV 893 (1427)
Q Consensus 825 ~a~~l~~~Gad~---i~i~Dt~G~l~--P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A-n~laAi~AGad~V 893 (1427)
++ +...+. +.+.-..|.-+ +..+.+.++.+|+.. ++||.+ +.|.-.. ++-.++++ ||.+
T Consensus 148 i~----~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 148 IA----ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HH----hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 33 323333 33455566543 467889999999875 888877 3455534 66667777 8765
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.079 Score=56.66 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=62.5
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEeeeecccccc--------------------ccceEEEEccCCCCCHHHHHH
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQR--------------------RYQKVIQIAPAQDMSVSVRDA 310 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr--------------------~~qk~ie~aPa~~l~~e~~~~ 310 (1427)
.+..|||||- |-++-+..+...=-+-+.+..-|-.++. .+. ++...|. .+-+.+.++
T Consensus 21 ~~~~IeEyvi-G~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~v-vvGn~p~-vlRESLL~~ 97 (188)
T PF06973_consen 21 ENAIIEEYVI-GVPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYV-VVGNIPA-VLRESLLPK 97 (188)
T ss_dssp CCEEEEE----SEEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EE-EEEEEEE-EE-GGGHHH
T ss_pred cccEEEEEec-CceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceE-EECCccc-chhHhhHHH
Confidence 6899999999 7777777775433233333322211111 111 2233455 477888899
Q ss_pred HHHHHHHHHHHc------CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 311 ITETSVRLAKSL------GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 311 l~~~a~~l~~al------g~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
+.+++.+++++. |+-|++.+|.+++++.++++.|+.+|+.++
T Consensus 98 vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gG 145 (188)
T PF06973_consen 98 VFEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCC
Confidence 999999888765 788999999999999999999999999986
|
Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.83 Score=49.77 Aligned_cols=173 Identities=16% Similarity=0.130 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC--CceeeeecccccccccCCCcchHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN--IPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~--~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+.+...++++.+.+ .|++.|++.| +-++.+++..++ .++.+-+-+.+ ++ ... ....
T Consensus 11 d~~~~~~~~~~~~~--~gv~gi~~~g----------------~~i~~~~~~~~~~~~~v~~~v~~~~--~~-~~~-~~~~ 68 (201)
T cd00945 11 TLEDIAKLCDEAIE--YGFAAVCVNP----------------GYVRLAADALAGSDVPVIVVVGFPT--GL-TTT-EVKV 68 (201)
T ss_pred CHHHHHHHHHHHHH--hCCcEEEECH----------------HHHHHHHHHhCCCCCeEEEEecCCC--CC-CcH-HHHH
Confidence 56778888888887 7999999875 345566666664 44333221111 11 112 2345
Q ss_pred HHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh---cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV---TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~---G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
+.++.|.+.|.|.+-+..+... .+.+...++.+.+. +. - .+.|. .|..+ .+++.+.++++.
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---p---v~iy~----~p~~~-~~~~~~~~~~~~ 137 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGL---P---LKVIL----ETRGL-KTADEIAKAARI 137 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCc---e---EEEEE----ECCCC-CCHHHHHHHHHH
Confidence 5688999999999887544321 34444545545444 55 2 22333 34332 478889988888
Q ss_pred HHHCCCCEEEEccccCcC----CHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 829 LVESGAQVLCLKDMAGLL----KPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l----~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
+.+.|++. ||++.|.. ....+..+ ++.++ ++++-.-+-.+ ...++..++.+||+.+
T Consensus 138 ~~~~g~~~--iK~~~~~~~~~~~~~~~~~i----~~~~~~~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 138 AAEAGADF--IKTSTGFGGGGATVEDVKLM----KEAVGGRVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred HHHhCCCE--EEeCCCCCCCCCCHHHHHHH----HHhcccCCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 88888885 56777743 44555444 44443 45665554333 2567788888898865
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.06 Score=47.98 Aligned_cols=66 Identities=27% Similarity=0.441 Sum_probs=47.3
Q ss_pred ccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEE
Q psy15244 1289 LNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNI 1368 (1427)
Q Consensus 1289 v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v 1368 (1427)
+.+++.|...+|.++.|+.+ .. |..-..++-. .....|.||..|.|
T Consensus 2 v~a~~~G~v~~~~v~~G~~v-----------~~-g~~l~~i~~~----------------------~~~~~i~ap~~G~v 47 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKV-----------EA-GQPLAVLEAM----------------------KMENEVTAPVAGVV 47 (67)
T ss_pred ccCCccEEEEEEEeCCCCEE-----------CC-CCEEEEEEcc----------------------cEEEEEeCCCCEEE
Confidence 45778888888888888775 12 3222111100 01346999999999
Q ss_pred EEEEecCCCEEecCCEEEEE
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
.++.++.|+.|++|++|+.|
T Consensus 48 ~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 48 KEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEEECCCCEECCCCEEEEC
Confidence 99999999999999999875
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. |
| >cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.055 Score=63.38 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=53.5
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK--TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK--me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
..|.||-+|. +...++.||.|++||+|+.+-..- ...+|+||.+|+|. .....-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~-~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGL-LRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeE-EEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence 4789999994 567999999999999999996532 33689999999994 45577788889998875
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.059 Score=63.99 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=54.0
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcC----CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM----KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam----Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
..|.||.+| ++...++.||.|++||+|+.|-.+ ....+|+||.+|+|... ...-.|..||.|+.|
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i 313 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVL 313 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEE
Confidence 568999999 778999999999999999999775 34678999999998644 344568888888765
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.13 Score=60.97 Aligned_cols=32 Identities=53% Similarity=0.769 Sum_probs=28.6
Q ss_pred cceeEeecccccccchhhhhcccccccccccc
Q psy15244 612 LKHVLLTDTTFRDAHQSLLATRVRTYDLKKVM 643 (1427)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~ 643 (1427)
.+.+.++||+.||+|||+.|||.|+=|.+-+.
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~ 34 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIA 34 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHH
Confidence 46789999999999999999999999987653
|
|
| >cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.068 Score=62.91 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC---CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM---KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam---Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.||-+| ++...++.||.|++||+|+.|=.. ....+|+||.+|+|.. ....-.|..|++|+.|
T Consensus 228 ~~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i 297 (298)
T cd06253 228 DVVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI 297 (298)
T ss_pred ceEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence 34678999999 778889999999999999998764 2466899999999965 4566788999999875
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >TIGR02994 ectoine_eutE ectoine utilization protein EutE | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.077 Score=63.12 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=55.0
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC----ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK----TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK----me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
.-|.||-+| ++...|+.||.|++||+|+.|=..- ...+|+||.+|+|-. ....-.|..||.|+.|
T Consensus 256 ~~v~Ap~~G-i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDG-LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCe-EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 469999999 6679999999999999999997752 467899999999975 5566788889998865
|
Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.12 Score=64.13 Aligned_cols=31 Identities=35% Similarity=0.586 Sum_probs=27.8
Q ss_pred eeEeecccccccchhhhhccccccccccccc
Q psy15244 614 HVLLTDTTFRDAHQSLLATRVRTYDLKKVMM 644 (1427)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 644 (1427)
.+.|+|||+||++||+.+++.++-|...++.
T Consensus 3 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~ 33 (448)
T PRK12331 3 KIKITETVLRDGQQSLIATRMTTEEMLPILE 33 (448)
T ss_pred ccEEEECCCCccccCcCCcccCHHHHHHHHH
Confidence 5899999999999999999999999887643
|
|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.15 Score=62.53 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCcccccHHHHHH
Q psy15244 71 RVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKA 150 (1427)
Q Consensus 71 riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~ 150 (1427)
...+.+.+.|+.+++++...-. +.|.....+ + .+ ++.|-+.+--.. +++-++ +...+.++
T Consensus 204 ~f~~~f~~~G~~~vI~d~~~L~------y~~g~L~~~-~-~~------ID~VyRR~Vt~e---~l~~~d---~~~~li~A 263 (445)
T PF14403_consen 204 VFQRLFEEHGYDCVICDPRDLE------YRDGRLYAG-G-RP------IDAVYRRFVTSE---LLERYD---EVQPLIQA 263 (445)
T ss_pred HHHHHHHHcCCceEecChHHce------ecCCEEEEC-C-Ee------eehhhHhhhhHH---hhhccc---cchHHHHH
Confidence 3677788999999987543322 233333322 1 11 334444333322 122232 33355666
Q ss_pred HHHCCCceeCCCHHHHHHhCCHHHHHHHHH---------------hCCCCCCCCccccCCC--------HHHHHHHHHhc
Q psy15244 151 VIGAGLEFIGPAPNVLKTLGDKVLARDAAL---------------KADVPIIPGTTEPVTD--------VDKVKEFCDEV 207 (1427)
Q Consensus 151 ~e~~Gi~fiGps~eai~~~~DK~~~r~~a~---------------~aGVpvp~~~~~~v~s--------~eea~~~a~~i 207 (1427)
..+.-+.++|+ -..++++||..+.-+-. +..||-.. .++. ..++.+++...
T Consensus 264 y~~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~----~l~~~~~~~~g~~~dL~~~~~a~ 337 (445)
T PF14403_consen 264 YRDGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTR----LLTAGRTTYQGEDVDLVEFAIAN 337 (445)
T ss_pred HhcCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceE----EEcCccccccccchhHHHHHHhc
Confidence 66655666653 34456666655543322 22243221 2222 34555555555
Q ss_pred CCcEEEeecCCCCCcCeEEe--cCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc
Q psy15244 208 EFPVILKAAFGGGGRGMRMV--ANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 208 GyPvVVKP~~GgGGrGV~iV--~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
.=-+|+||.++.||+||.+= .++++.+++++++. ++++++|||++ +.......+.|++
T Consensus 338 r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~-~~~~~~~~~~dg~ 397 (445)
T PF14403_consen 338 RDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVR-PPREPMPAFEDGE 397 (445)
T ss_pred hhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEec-CCccccccccCCc
Confidence 56789999999999999976 56788888877654 35899999999 5444444444543
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=94.80 E-value=7.6 Score=45.56 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=127.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec-cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM-WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~-~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
.+.+++++.++.+.+ .|+..+-+ .+|-.. ....+.+.++.+++...+..+...+. +|+ +-+
T Consensus 62 ~~~eei~~~~~~~~~--~g~~~~~l~~~g~~~------~~~~~~~~~~~i~~~~~~~~i~~~~~----~g~------~~~ 123 (296)
T TIGR00433 62 KKVDEVLEEARKAKA--AGATRFCLVASGRGP------KDREFMEYVEAMVQIVEEMGLKTCAT----LGL------LDP 123 (296)
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEEecCCC------ChHHHHHHHHHHHHHHHhCCCeEEec----CCC------CCH
Confidence 567888888888877 68765432 111111 12233556666665544333333221 121 225
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDL 825 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~ 825 (1427)
+.++...++|++.+.+..-.| +++....+++.++++|. .+...+.+. . ..+.+.+.+.
T Consensus 124 e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi---~v~~~~i~G----l----~et~~d~~~~ 192 (296)
T TIGR00433 124 EQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGL---KVCSGGIFG----L----GETVEDRIGL 192 (296)
T ss_pred HHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCC---EEEEeEEEe----C----CCCHHHHHHH
Confidence 668888999999987754444 23355678889999998 666555443 1 2467888899
Q ss_pred HHHHHHCCCCEEEE------cccc----CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 826 AKQLVESGAQVLCL------KDMA----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 826 a~~l~~~Gad~i~i------~Dt~----G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++.+.+.|++.+.+ +.|. ....+.+..+++...|..+|+..|-+=+=--.-+.---..-|+.+||+.+
T Consensus 193 ~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i-- 270 (296)
T TIGR00433 193 ALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSI-- 270 (296)
T ss_pred HHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceE--
Confidence 99999999986642 2331 23455788889999998898755522111111112111223899999987
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCC
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTD 920 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g 920 (1427)
.++++=-..|++.-++=+.+++..|
T Consensus 271 ~~g~~~~~~g~~~~~~~~~~~~~~~ 295 (296)
T TIGR00433 271 FVGDYLTTTGNPEEDKDKKLLAKLG 295 (296)
T ss_pred EEcCcccCCCCCCcHHHHHHHHHcC
Confidence 4567666788888734344555543
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >COG3608 Predicted deacylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.072 Score=62.47 Aligned_cols=66 Identities=29% Similarity=0.372 Sum_probs=54.0
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC---CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM---KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam---Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
..-+.||-.| +++..|+.||.|++||+|+.+=.+ +-+.+|+|+.+|+|.... ---.|+.||++..+
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v 324 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVV 324 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeee
Confidence 3459999999 779999999999999999999888 688899999999997664 23345556776654
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=94.69 E-value=4 Score=46.29 Aligned_cols=206 Identities=15% Similarity=0.104 Sum_probs=117.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCceeeeecccccccccCCCcch
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
...+.+|..++++...+ .|++.+-+-.|. ++..++.. .+.++-+-+++...+++-..+...
T Consensus 16 p~~~~~d~~~~~~~~~~--~g~~av~v~~~~----------------~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~ 77 (235)
T cd00958 16 PNPGLEDPEETVKLAAE--GGADAVALTKGI----------------ARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKV 77 (235)
T ss_pred CCccccCHHHHHHHHHh--cCCCEEEeChHH----------------HHhcccccCCCCcEEEEECCCCCCCCCCCCchh
Confidence 34567788888888887 688888764321 11111112 233333334555566653333333
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCh------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNS------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
....++.|.+.|.+.+-+-....+ ++.+....+.+++.|. .+-......+ .-.+. ..+.+.+...++.
T Consensus 78 ~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~---~~iie~~~~g-~~~~~--~~~~~~i~~~~~~ 151 (235)
T cd00958 78 LVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGL---PLIAWMYPRG-PAVKN--EKDPDLIAYAARI 151 (235)
T ss_pred hhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC---CEEEEEeccC-CcccC--ccCHHHHHHHHHH
Confidence 344589999999997744443332 2366667777777887 3222211111 00111 2345666666888
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEee---cCCcchHHHHHHHHHHhcCCEEEeccccCCCCCC
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHT---HDMAGTGVATTLACVKAGADIVDVAADSMSGICS 905 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~---Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tg 905 (1427)
+.++|||.|.+.=+. .++. ++.+.+.. .+|+-+=. .+|..-.+.|+-.++++||+.|-..-+=+ .
T Consensus 152 a~~~GaD~Ik~~~~~---~~~~----~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~----~ 219 (235)
T cd00958 152 GAELGADIVKTKYTG---DAES----FKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF----Q 219 (235)
T ss_pred HHHHCCCEEEecCCC---CHHH----HHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh----c
Confidence 889999999985322 2333 44455555 46654422 24455577889999999999885544333 3
Q ss_pred CCcHHHHHHHHH
Q psy15244 906 QPAMGTIVSCLE 917 (1427)
Q Consensus 906 n~~lE~vv~~L~ 917 (1427)
.++.++.+..|+
T Consensus 220 ~~dp~~~~~~~~ 231 (235)
T cd00958 220 RPDPVAMLRAIS 231 (235)
T ss_pred CCCHHHHHHHHH
Confidence 344555665554
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >KOG3895|consensus | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.21 Score=57.76 Aligned_cols=219 Identities=18% Similarity=0.192 Sum_probs=129.4
Q ss_pred HhcCCCEEEeCCCc--ccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHH----HHhCC---CCCCCCccccC
Q psy15244 127 KNNNVDAIHPGYGF--LSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDA----ALKAD---VPIIPGTTEPV 194 (1427)
Q Consensus 127 ~~~~vDaI~pg~gf--lsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~----a~~aG---Vpvp~~~~~~v 194 (1427)
+....|+|+.+-+. +.+|. .+...+..+||+++ +|...+-.+.||-..+.- ....| +|..+-++ .
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--Y 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee--c
Confidence 34567888877442 23333 45567788999988 788888888887554433 34455 56555431 2
Q ss_pred CCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc
Q psy15244 195 TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 195 ~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
-+-.+ ....-.||+|||--.+..|.|=.+|+|.+|+.+.-.- .... +...-+|.||+.-..+.||-++..+
T Consensus 229 PnHK~---m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~sv-val~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 229 PNHKE---MLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASV-VALT-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred CCchh---hccCCCCcEEEEecccccccceeeecchhhhHhHHHH-HHHH-----hhhhhccccccccceeehhhhhhhH
Confidence 22222 2234459999999999999999999999998764332 2211 2456689999966778888776643
Q ss_pred ccEEEeeeeccccccccceEEEEccCCCCC-HHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCC-CCC--
Q psy15244 275 GDVVHLYERDCSMQRRYQKVIQIAPAQDMS-VSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP-RLQ-- 350 (1427)
Q Consensus 275 G~vv~l~erd~s~qr~~qk~ie~aPa~~l~-~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINp-Rl~-- 350 (1427)
-..+ .+ ++-. +.|.-..+ + -|. -..-++-.-+...+.+.+|---++.|+.+..+||+=|++|+|- -+.
T Consensus 300 Kaym---Rt--sIsg-nWKtNtGS-a-mLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~smpli 371 (488)
T KOG3895|consen 300 KAYM---RT--SISG-NWKTNTGS-A-MLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSMPLI 371 (488)
T ss_pred HHHh---hh--hhcc-CcccCchH-H-HHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccccccc
Confidence 2111 10 1111 11111000 0 000 0011233334445566666666888999999999999999997 222
Q ss_pred CchhHHHHHhCCCHH
Q psy15244 351 VEHTLSEEITGIDVV 365 (1427)
Q Consensus 351 ge~~vte~~tGiDLv 365 (1427)
|||..-..-.-.+|+
T Consensus 372 Geh~eeDrql~~~Lv 386 (488)
T KOG3895|consen 372 GEHQEEDRQLISELV 386 (488)
T ss_pred ccchhHHHHHHHHHH
Confidence 666554433333333
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.64 Score=53.54 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc--------h-hhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV--------S-HTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat--------f-d~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|++ .|++.||+|-|.. . .++.|-|.. +-++-++.+|+..+++++-.+.
T Consensus 22 ~~~~~~~~~~~l~~--~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~----- 94 (259)
T PF00290_consen 22 DLETTLEILKALEE--AGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT----- 94 (259)
T ss_dssp SHHHHHHHHHHHHH--TTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-----
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe-----
Confidence 45778999999999 8999999985433 1 112222222 3367778888778888865543
Q ss_pred ccccCCCcc-hHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYSPA-EVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~~n-vv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
|-|-.-. =+++|++.+.++|+|-+-|-|-.. +......+.+++.|+ . .|.+. +| .++.+.+.
T Consensus 95 --Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~--ee~~~~~~~~~~~gl---~---~I~lv----~p---~t~~~Ri~ 157 (259)
T PF00290_consen 95 --YYNPIFQYGIERFFKEAKEAGVDGLIIPDLPP--EESEELREAAKKHGL---D---LIPLV----AP---TTPEERIK 157 (259)
T ss_dssp ---HHHHHHH-HHHHHHHHHHHTEEEEEETTSBG--GGHHHHHHHHHHTT----E---EEEEE----ET---TS-HHHHH
T ss_pred --eccHHhccchHHHHHHHHHcCCCEEEEcCCCh--HHHHHHHHHHHHcCC---e---EEEEE----CC---CCCHHHHH
Confidence 3221111 156899999999999999988653 444555667888898 3 23333 44 24555555
Q ss_pred HHHHHHHHCCCCEEEE---ccccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 824 DLAKQLVESGAQVLCL---KDMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i---~Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
.+++.. -.-||+ .-++|.- .|..+.++++.+|+.. ++||-+= +|.....-.+.+..|||.|=+.
T Consensus 158 ~i~~~a----~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e~~~~~~~~aDGvIVG-- 226 (259)
T PF00290_consen 158 KIAKQA----SGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPEQAKKLAAGADGVIVG-- 226 (259)
T ss_dssp HHHHH-----SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHHHHHHHHTTSSEEEES--
T ss_pred HHHHhC----CcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHHHHHHHHccCCEEEEC--
Confidence 544433 344555 4444543 4788999999999998 8897652 2444445566666888876332
Q ss_pred cCCCCCCCCcHHHHHHHHHhC
Q psy15244 899 SMSGICSQPAMGTIVSCLENT 919 (1427)
Q Consensus 899 GmG~~tgn~~lE~vv~~L~~~ 919 (1427)
..++..++..
T Consensus 227 -----------Sa~v~~i~~~ 236 (259)
T PF00290_consen 227 -----------SAFVKIIEEN 236 (259)
T ss_dssp -----------HHHHHHHHHT
T ss_pred -----------HHHHHHHHHc
Confidence 2477777763
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=2 Score=48.29 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccc----ccccccCCCcch
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGN----SLVGYSNYSPAE 754 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~----n~vgy~~~~~nv 754 (1427)
+.++..+++..+.+ .|...+++.+ ++.++.+++.. ++|+-.+.+-. +.+- ++
T Consensus 21 ~~~~~~~~a~a~~~--~G~~~~~~~~---------------~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~---~~--- 76 (221)
T PRK01130 21 SPEIMAAMALAAVQ--GGAVGIRANG---------------VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYI---TP--- 76 (221)
T ss_pred CHHHHHHHHHHHHH--CCCeEEEcCC---------------HHHHHHHHHhC-CCCEEEEEecCCCCCCceE---CC---
Confidence 34678999999988 7988888631 46677787764 67753222311 1211 11
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC---hHHHHHHHHHHHHH-hcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN---SVPNLVKGMDAVQQ-VTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n---d~~~~~~~i~~a~~-~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~ 830 (1427)
..++++.+.++|+|.+-+-.+.. +-+.+...++.+++ .+. .+.. . .++.+. ++.+.
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i---~vi~----~---------v~t~ee----~~~a~ 136 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQ---LLMA----D---------CSTLEE----GLAAQ 136 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCC---eEEE----e---------CCCHHH----HHHHH
Confidence 23568999999999655543321 11456677888888 666 3221 1 234443 46788
Q ss_pred HCCCCEEEEc--cccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEE
Q psy15244 831 ESGAQVLCLK--DMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVD 894 (1427)
Q Consensus 831 ~~Gad~i~i~--Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD 894 (1427)
++|+|.|.+- +..|. ........+++.+++.+ ++|+-. ..|.. ..++..++++|||.|=
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia----~GGI~t~~~~~~~l~~GadgV~ 200 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GCPVIA----EGRINTPEQAKKALELGAHAVV 200 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CCCEEE----ECCCCCHHHHHHHHHCCCCEEE
Confidence 8999988652 21111 11122356788888887 788765 56774 5788889999999873
|
|
| >COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.052 Score=55.20 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=42.2
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEec
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~ 1411 (1427)
-+-|.|+-|.. +.|+.|++|+++++||+-|--.+|.||.+|+|.+++-+
T Consensus 36 ~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 36 DQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred HhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 45677877754 67899999999999999999999999999999988643
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.5 Score=49.12 Aligned_cols=170 Identities=13% Similarity=0.114 Sum_probs=112.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+..+..++|+...+ .|...|=+-- .+ .+.. .-.+.++.+++.. ++|+++. + | --+ ..
T Consensus 28 ~~~~~~~~~A~~~~~--~GA~~l~v~~---~~---~~~~-g~~~~~~~i~~~v-~iPi~~~--~-----~---i~~--~~ 85 (217)
T cd00331 28 REDFDPVEIAKAYEK--AGAAAISVLT---EP---KYFQ-GSLEDLRAVREAV-SLPVLRK--D-----F---IID--PY 85 (217)
T ss_pred CCCCCHHHHHHHHHH--cCCCEEEEEe---Cc---cccC-CCHHHHHHHHHhc-CCCEEEC--C-----e---ecC--HH
Confidence 455678899999988 6887764320 00 0111 2235677777764 6777742 2 1 111 23
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.+.++|+|.+.+....-..+.++..++.++..|. .+.+. . ++.+. ++++.+.|++.+
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~---~~~v~--v-----------~~~~e----~~~~~~~g~~~i 145 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELARELGM---EVLVE--V-----------HDEEE----LERALALGAKII 145 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCC---eEEEE--E-----------CCHHH----HHHHHHcCCCEE
Confidence 6999999999999988776666888888998888888 44221 1 22222 667778899999
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchH-HHHHHHHHHhcCCEEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTG-VATTLACVKAGADIVD 894 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD 894 (1427)
.+-...|...+... +++..+++.+| ++|+-.=+ |.. ..+...+.++||+.|=
T Consensus 146 ~~t~~~~~~~~~~~-~~~~~l~~~~~~~~pvia~g----GI~s~edi~~~~~~Ga~gvi 199 (217)
T cd00331 146 GINNRDLKTFEVDL-NTTERLAPLIPKDVILVSES----GISTPEDVKRLAEAGADAVL 199 (217)
T ss_pred EEeCCCccccCcCH-HHHHHHHHhCCCCCEEEEEc----CCCCHHHHHHHHHcCCCEEE
Confidence 88866666555555 67788887763 66764321 222 3678888999998764
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.12 Score=55.07 Aligned_cols=69 Identities=26% Similarity=0.414 Sum_probs=51.3
Q ss_pred eeccCCCCCccee-------eeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCc
Q psy15244 1287 IFLNGPNIGEEFS-------CEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGE 1359 (1427)
Q Consensus 1287 v~v~~~~~g~~~~-------~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~ 1359 (1427)
..|.++|.|.-|. |.++.|+.+ .. |..-..+|-. .....
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V-----------~~-Gq~l~iiEam----------------------K~~~e 126 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKV-----------KK-GQIVCIVEAM----------------------KLMNE 126 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEe-----------CC-CCEEEEEEec----------------------ccceE
Confidence 4578999999887 556777775 22 3322222211 13568
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
|.||..|+|.+|+|+.||.|+.||+|+.|+
T Consensus 127 I~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 127 IEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 999999999999999999999999999885
|
The gene name is accB or fabE. |
| >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.12 Score=54.97 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
...|.||..|+|.+|+++.|+.|..||+|+.|+
T Consensus 123 ~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 468999999999999999999999999999875
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.78 Score=55.23 Aligned_cols=211 Identities=15% Similarity=0.096 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccc-cCcCCHHHHHHHHHHHHHHcCCceEEE-------eecCCcchHHHHHHHHH-
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDM-AGLLKPTAAKLLIGSFREKYPNILIHV-------HTHDMAGTGVATTLACV- 886 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt-~G~l~P~~~~~lv~~lr~~~p~ipi~~-------H~Hnd~GlA~An~laAi- 886 (1427)
+.+++.+++.++.+.+.|++.|+|.+- .-......+.++++.+|+..|++.++. |.|.+.|+-....+..+
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 469999999999999999999999831 113567778999999999987666543 34677887776665544
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSS 966 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~ 966 (1427)
+||++.+..+ |.-..++ ++...+. ..++..+.-.+..+...+ .|+.+.. --++|-+==....-.|..
T Consensus 149 eAGl~~i~~~----~~E~~~~---~v~~~i~----~~~~~~~~~~~~i~~a~~-~Gi~v~s-~~i~G~~Et~ed~~~~l~ 215 (343)
T TIGR03551 149 EAGLDSMPGT----AAEILDD---EVRKVIC----PDKLSTAEWIEIIKTAHK-LGIPTTA-TIMYGHVETPEHWVDHLL 215 (343)
T ss_pred HhCcccccCc----chhhcCH---HHHHhcC----CCCCCHHHHHHHHHHHHH-cCCcccc-eEEEecCCCHHHHHHHHH
Confidence 6899988621 1111111 1111110 011222222233332222 2443322 124554421234445555
Q ss_pred HHHHhhhhcCCCCCCCCCcCcccEEE-ecCCCccHHHHHHH-HHHCCCCHHHHHHHHHHHHHHcCCC-CccccchhhHHH
Q psy15244 967 YWRKVRELYAPFECTDLKAASSEAYL-YEIPGGQYTNLKFR-TMSFGLDFEDVKRAYRTANFLLGDI-IKCTPSSKVVAD 1043 (1427)
Q Consensus 967 ~~~~~~~~Y~~f~~~~~~g~~~~v~~-~~~pGg~~snl~~q-l~~~gl~~~ev~~~~~~v~~~lG~~-~~vTP~sq~vg~ 1043 (1427)
.+.+....|..|. + -+-+ ...||.. +..+ ...-++...+.++.++-.|-.+.+. +.+.-+....|+
T Consensus 216 ~lr~l~~~~~~~~-~-------~iP~~f~~~gT~---l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~ 284 (343)
T TIGR03551 216 ILREIQEETGGFT-E-------FVPLPFVHYNAP---LYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGK 284 (343)
T ss_pred HHHHhhHHhCCee-E-------EEeccccCCCCc---cccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCH
Confidence 5555544443332 0 1111 1123432 2211 0112347889999999999999874 455544456665
Q ss_pred H-HHHHHH
Q psy15244 1044 L-AIFMTQ 1050 (1427)
Q Consensus 1044 ~-a~~~v~ 1050 (1427)
. +.+...
T Consensus 285 ~~~~~~l~ 292 (343)
T TIGR03551 285 KLAQVALR 292 (343)
T ss_pred HHHHHHHh
Confidence 4 344343
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.12 Score=51.85 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHcCCEEEEEecCCCccC-ccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCccccc
Q psy15244 66 SEVAIRVARACNEMGIKSVGIYSEQDKFS-AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSER 144 (1427)
Q Consensus 66 Geia~riiraa~elGi~~vav~s~~d~~s-~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~ 144 (1427)
+..|+.|++-|++.|++|++|........ .....+|+.+.+++ ..+.++ +.+.+-.++. ++|+.-.|.+.+.
T Consensus 6 SHSALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~----f~di~~-~~~q~~L~~~--N~I~VPhgSfv~Y 78 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDS----FSDILS-EEVQEKLREM--NAIFVPHGSFVAY 78 (124)
T ss_dssp STTHHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESS----CGHCCS-HHHHHHHHHT--TEEE--BTTHHHH
T ss_pred chHHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCC----HHHHHh-HHHHHHHHHC--CeEEecCCCeeEe
Confidence 34699999999999999999976443211 12237899988751 122222 2444444443 4566566666665
Q ss_pred HHHHHHHHH-CCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q psy15244 145 EDFAKAVIG-AGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPG 189 (1427)
Q Consensus 145 ~~~a~~~e~-~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~ 189 (1427)
... +..++ .-+|++|+. ..++.-.|...-+++|.++|||.|.-
T Consensus 79 ~G~-d~ie~~~~vP~FGNR-~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 79 VGY-DRIENEFKVPIFGNR-NLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp H-H-HHHHHT-SS-EES-C-CGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred ecH-HHHhhcCCCCeecCh-HHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 544 34455 899999974 55666668888889999999999973
|
Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A. |
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=94.04 E-value=12 Score=42.20 Aligned_cols=210 Identities=18% Similarity=0.144 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccc----cChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK----ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~----e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
+.+++++-++.+.. .|.+.||.- .| ++. +..++.+..+++.. +.++-.-+|-.+-=|.....++.
T Consensus 8 ~~~~~~~~~~~~~~--~~~D~vElR----lD----~l~~~~~~~~~~~l~~lr~~~-~~piI~T~R~~~eGG~~~~~~~~ 76 (224)
T PF01487_consen 8 TLEELLAELEEAES--SGADAVELR----LD----YLENDSAEDISEQLAELRRSL-DLPIIFTVRTKEEGGRFQGSEEE 76 (224)
T ss_dssp SHHHHHHHHHHHHH--TTTSEEEEE----GG----GSTTTSHHHHHHHHHHHHHHC-TSEEEEE--BGGGTSSBSS-HHH
T ss_pred CHHHHHHHHHHHHh--cCCCEEEEE----ec----cccccChHHHHHHHHHHHHhC-CCCEEEEecccccCCCCcCCHHH
Confidence 34455555555544 499999973 22 233 45678888999888 88888888865444555666777
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN-SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n-d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G 833 (1427)
..++++.+++.|++.+-|=.... +.... ...++..+. .+ -++|- ||.. --+.+.+.++.+++.+.|
T Consensus 77 ~~~ll~~~~~~~~d~iDiE~~~~~~~~~~---~~~~~~~~~---~i--I~S~H-~f~~----tp~~~~l~~~~~~~~~~g 143 (224)
T PF01487_consen 77 YLELLERAIRLGPDYIDIELDLFPDDLKS---RLAARKGGT---KI--ILSYH-DFEK----TPSWEELIELLEEMQELG 143 (224)
T ss_dssp HHHHHHHHHHHTSSEEEEEGGCCHHHHHH---HHHHHHTTS---EE--EEEEE-ESS-------THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEEcccchhHHHH---HHHHhhCCC---eE--EEEec-cCCC----CCCHHHHHHHHHHHHhcC
Confidence 88999999999999998877632 22111 344444554 33 23444 3322 234556999999999999
Q ss_pred CCEEEEccccCcCCHHHHHHHHHHHHHHc--CCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKY--PNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 834 ad~i~i~Dt~G~l~P~~~~~lv~~lr~~~--p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
||++-|+=|+. .+.+...|...+++.- ++.|+-..+=-..| ..+-+.+-..|....=+ ..|-..-+||+++++
T Consensus 144 adivKia~~~~--~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G--~~SRi~~~~~Gs~~t~~-~~~~~sApGQl~~~~ 218 (224)
T PF01487_consen 144 ADIVKIAVMAN--SPEDVLRLLRFTKEFREEPDIPVIAISMGELG--RISRILNPIFGSVLTFA-SAGEASAPGQLTLEE 218 (224)
T ss_dssp -SEEEEEEE-S--SHHHHHHHHHHHHHHHHHTSSEEEEEEETGGG--HHHHHCHHHHTBSEEEE-BSSS-SSTT-EBHHH
T ss_pred CCeEEEEeccC--CHHHHHHHHHHHHHHhhccCCcEEEEEcCCCc--hhHHHHHhhhcCCcccC-CCCCCCCCCCCcHHH
Confidence 99999986654 4567777666655432 57887766544444 55667777778766555 555555789999999
Q ss_pred HHHHHH
Q psy15244 912 IVSCLE 917 (1427)
Q Consensus 912 vv~~L~ 917 (1427)
+...|+
T Consensus 219 l~~~~~ 224 (224)
T PF01487_consen 219 LREILH 224 (224)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887663
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.16 Score=61.30 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC----ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK----TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK----me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+...|.||-.| ++...|+.||.|++||+|+.|-..- -+.+|+||.+|+|. .....-.|..|+.|+.|
T Consensus 288 ~~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 288 GVEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI 358 (359)
T ss_pred CcEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence 34578999999 7778999999999999999885522 23336999999985 55678889999999876
|
This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.42 Score=59.81 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecccc
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADS 899 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~G 899 (1427)
...+.++.|.+.|++.|.| |++- ..|..+.++|+.+|+.+|++||-. ..+.....+..++++|||.|++.+.|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred cHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence 4568899999999999888 8887 888999999999999999999877 55666778889999999999976544
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.5 Score=46.52 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+.+++.+.+ .|+..+|+-- -+.+..+.++.+++..|+..+.. |. ......
T Consensus 14 ~~~~~~~~~~~l~~--~G~~~vev~~----------~~~~~~~~i~~l~~~~~~~~iGa---g~----------v~~~~~ 68 (190)
T cd00452 14 DAEDALALAEALIE--GGIRAIEITL----------RTPGALEAIRALRKEFPEALIGA---GT----------VLTPEQ 68 (190)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEEeC----------CChhHHHHHHHHHHHCCCCEEEE---Ee----------CCCHHH
Confidence 46788899999988 7999999841 23455667889999888654332 11 011345
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.+.+.|.+.++.-. ++ ...+++++..|. ..... ..|++. +.++.++|+|.|.
T Consensus 69 ~~~a~~~Ga~~i~~p~--~~----~~~~~~~~~~~~---~~i~g-------------v~t~~e----~~~A~~~Gad~i~ 122 (190)
T cd00452 69 ADAAIAAGAQFIVSPG--LD----PEVVKAANRAGI---PLLPG-------------VATPTE----IMQALELGADIVK 122 (190)
T ss_pred HHHHHHcCCCEEEcCC--CC----HHHHHHHHHcCC---cEECC-------------cCCHHH----HHHHHHCCCCEEE
Confidence 8899999999986432 22 345666777666 22111 224433 4455679999999
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+ +-+. |. -.++++.+++.+|++|+..= -|.-..|....+++||+.|-++
T Consensus 123 ~-~p~~---~~-g~~~~~~l~~~~~~~p~~a~----GGI~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 123 L-FPAE---AV-GPAYIKALKGPFPQVRFMPT----GGVSLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred E-cCCc---cc-CHHHHHHHHhhCCCCeEEEe----CCCCHHHHHHHHHCCCEEEEEc
Confidence 8 4332 22 45577888887777776553 3666789999999999887433
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.14 Score=59.98 Aligned_cols=64 Identities=23% Similarity=0.180 Sum_probs=50.5
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC--CceeeeecCCCeEEEEEEecCCCeeCCCCEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM--KTETLIHASADGVVKEIFVEVGGQVAQNDLV 1422 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam--Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L 1422 (1427)
....+.||-+| ++...++.||.|++||+|+.+=.. ....+|+||.+|+|..+. ..-.|..|+.|
T Consensus 222 ~~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 45678999999 778899999999999999998442 346789999999997554 34566666665
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=93.84 E-value=4.8 Score=44.79 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=103.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--CCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN--YSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~--~~~nvv 755 (1427)
.+.+|+.++++...+ .|+..+-+..+ .++..++...+..+.+-. .+||.. .+...+
T Consensus 14 ~t~~~i~~~~~~a~~--~~~~av~v~p~----------------~v~~~~~~l~~~~~~v~~----~~~fp~g~~~~~~k 71 (203)
T cd00959 14 ATEEDIRKLCDEAKE--YGFAAVCVNPC----------------FVPLAREALKGSGVKVCT----VIGFPLGATTTEVK 71 (203)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEcHH----------------HHHHHHHHcCCCCcEEEE----EEecCCCCCcHHHH
Confidence 577888888888877 57888766421 233445555444433222 233322 334445
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
-.-++.|++.|.|.+-+...... .+.+..-+..+++. |. .+-+ |.-+ . ..+++.+...++.
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~---~lkv-I~e~----~----~l~~~~i~~a~ri 139 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGA---PLKV-ILET----G----LLTDEEIIKACEI 139 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCC---eEEE-EEec----C----CCCHHHHHHHHHH
Confidence 55589999999999888766552 23222222222222 44 3433 2222 1 3468899999999
Q ss_pred HHHCCCCEEEEc--cccCcCCHHHHHHHHHHHHHHcCCceEEEe--ecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 829 LVESGAQVLCLK--DMAGLLKPTAAKLLIGSFREKYPNILIHVH--THDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 829 l~~~Gad~i~i~--Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H--~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+.++|||.|-.. =+.+-.+|..+..+-+.++. .++|-.= .+ | ...+++-+++||+.+-+
T Consensus 140 a~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~---~v~ik~aGGik-t----~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 140 AIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGG---RVGVKAAGGIR-T----LEDALAMIEAGATRIGT 202 (203)
T ss_pred HHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCC---CceEEEeCCCC-C----HHHHHHHHHhChhhccC
Confidence 999999988765 22234566777766666652 3454332 12 2 45667777889987744
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=16 Score=44.25 Aligned_cols=213 Identities=10% Similarity=0.034 Sum_probs=132.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
.++.+++++.|....+ .|+..+=.+++.. + ....+++.+..+.+.+....+...+ ..|+ .-.
T Consensus 75 ~ls~eEI~~~a~~~~~--~G~~~i~i~~~g~-~-----p~~~~~e~i~~~i~~ik~~~i~v~~----s~G~------ls~ 136 (345)
T PRK15108 75 LMEVEQVLESARKAKA--AGSTRFCMGAAWK-N-----PHERDMPYLEQMVQGVKAMGLETCM----TLGT------LSE 136 (345)
T ss_pred CCCHHHHHHHHHHHHH--cCCCEEEEEecCC-C-----CCcchHHHHHHHHHHHHhCCCEEEE----eCCc------CCH
Confidence 3899999999998887 7999884432211 0 0122345554443333322222111 1232 224
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDL 825 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~ 825 (1427)
+.+++.+++|+|.+.+..-.+ +++.-...++.++++|+ .+...+.+. - .-+.+..++.
T Consensus 137 e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~---~v~sg~i~G----l----gEt~ed~v~~ 205 (345)
T PRK15108 137 SQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI---KVCSGGIVG----L----GETVKDRAGL 205 (345)
T ss_pred HHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCC---ceeeEEEEe----C----CCCHHHHHHH
Confidence 557888899999888744333 44566778889999998 665554444 1 2477888888
Q ss_pred HHHHHHC--CCCEEEE------ccc-c-C--cCCHHHHHHHHHHHHHHcCCceEEEeecC-CcchHHHHHHHHHHhcCCE
Q psy15244 826 AKQLVES--GAQVLCL------KDM-A-G--LLKPTAAKLLIGSFREKYPNILIHVHTHD-MAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 826 a~~l~~~--Gad~i~i------~Dt-~-G--~l~P~~~~~lv~~lr~~~p~ipi~~H~Hn-d~GlA~An~laAi~AGad~ 892 (1427)
+..+.++ ..+.|.+ +.| . + .+.|.+..+.|...|=-+|+..|.+=.-- +.|- -....|+.+||+.
T Consensus 206 ~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~--~~~~~~l~~Gan~ 283 (345)
T PRK15108 206 LLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCFMAGANS 283 (345)
T ss_pred HHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhCh--hhHHHHHHcCCcE
Confidence 9888888 4566543 344 1 1 35778899999998877887554432221 2221 2457899999998
Q ss_pred EEecccc-CCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 893 VDVAADS-MSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 893 VD~av~G-mG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
+ -+.. +=-.+| -+.++.+.+++..|+.+
T Consensus 284 ~--~~g~~~ltt~g-~~~~~~~~~i~~~g~~~ 312 (345)
T PRK15108 284 I--FYGCKLLTTPN-PEEDKDLQLFRKLGLNP 312 (345)
T ss_pred E--EECCccccCCC-CCHHHHHHHHHHcCCCc
Confidence 8 2222 112233 47789999999887764
|
|
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=12 Score=43.20 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc----ChH-HHHHHHHHhCCCCceeeeecccccccccCCCcc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE----CPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPA 753 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e----~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~n 753 (1427)
+.+++++-++.+.. .|.+.+|.- .| |+.. +.+ +.+..+++..++.++-.-+|..+-=|-....+.
T Consensus 26 ~~~e~~~~~~~~~~--~~aD~vElR----lD----~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~ 95 (253)
T PRK02412 26 TLEEVLAEALAISK--YDADIIEWR----AD----FLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDE 95 (253)
T ss_pred CHHHHHHHHHHHhh--cCCCEEEEE----ec----hhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHH
Confidence 45677777776666 588999962 12 2222 111 234566677777888888886544344444555
Q ss_pred hHHHHHHHHHhcC-CCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 754 EVGAFCRLASQAG-IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 754 vv~~~v~~a~~~G-id~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
...+.++.+.+.| +|.+-|=...+ -+.+...++.+++.|. .+ -++|- ||... -+.+.+.++.+++.+.
T Consensus 96 ~~~~ll~~~~~~~~~d~vDiEl~~~-~~~~~~l~~~~~~~~~---kv--I~S~H-~f~~t----P~~~~l~~~~~~~~~~ 164 (253)
T PRK02412 96 EYLALIKAVIKSGLPDYIDVELFSG-KDVVKEMVAFAHEHGV---KV--VLSYH-DFEKT----PPKEEIVERLRKMESL 164 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCC-hHHHHHHHHHHHHcCC---EE--EEeeC-CCCCC----cCHHHHHHHHHHHHHh
Confidence 5666788889999 88888765433 3556777777777766 33 33443 23111 2335688899999999
Q ss_pred CCCEEEEccccCcCCHHHHHHHHHHHHH---HcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcH
Q psy15244 833 GAQVLCLKDMAGLLKPTAAKLLIGSFRE---KYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAM 909 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~P~~~~~lv~~lr~---~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~l 909 (1427)
|||++-|+=|+- .+.++.+++...++ ..++.|+-.=+=-. +|..+=+.+-..|--+.-+++.. ..-+||++.
T Consensus 165 gaDivKia~~a~--~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~--~G~~SRil~~~~GS~~ty~~~~~-~sAPGQ~~~ 239 (253)
T PRK02412 165 GADIVKIAVMPQ--SEQDVLTLLNATREMKELYADQPLITMSMGK--LGRISRLAGEVFGSSWTFASLDK-ASAPGQISV 239 (253)
T ss_pred CCCEEEEEecCC--CHHHHHHHHHHHHHHHhcCCCCCEEEEeCCC--CchHHHcchhhhCCcceecCCCC-CCCCCCCCH
Confidence 999999875543 45677777766543 22456754322222 23345566677787777666654 457999999
Q ss_pred HHHHHHHHhCC
Q psy15244 910 GTIVSCLENTD 920 (1427)
Q Consensus 910 E~vv~~L~~~g 920 (1427)
+++...++..+
T Consensus 240 ~el~~i~~~l~ 250 (253)
T PRK02412 240 EDLRRILEILH 250 (253)
T ss_pred HHHHHHHHHhc
Confidence 99988887653
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=6.1 Score=44.64 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=107.4
Q ss_pred CCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccccccc--CC
Q psy15244 673 LLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYS--NY 750 (1427)
Q Consensus 673 l~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~--~~ 750 (1427)
++....+.+|+.++++.-.+ -|+.++-+.. ..+...++.+.++.+..- ..+||- ..
T Consensus 14 ~L~p~~t~~~i~~~~~~A~~--~~~~avcv~p----------------~~v~~a~~~l~~~~v~v~----tVigFP~G~~ 71 (221)
T PRK00507 14 LLKPEATEEDIDKLCDEAKE--YGFASVCVNP----------------SYVKLAAELLKGSDVKVC----TVIGFPLGAN 71 (221)
T ss_pred cCCCCCCHHHHHHHHHHHHH--hCCeEEEECH----------------HHHHHHHHHhCCCCCeEE----EEecccCCCC
Confidence 34445778888888887766 5888776542 234455555554432221 134442 22
Q ss_pred CcchHHHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+-...-.-++.|.+.|.+.+.+....+. ++.+..-+..+++. +. .+-+-+. .+ ..+.+.+.
T Consensus 72 ~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~---~lKvIlE------t~---~L~~e~i~ 139 (221)
T PRK00507 72 TTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGA---VLKVIIE------TC---LLTDEEKV 139 (221)
T ss_pred hHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCc---eEEEEee------cC---cCCHHHHH
Confidence 3333445578899999999998877764 45555556655553 32 3333222 22 35677889
Q ss_pred HHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++++.+.++|+| .||=+.|....-...+-|+.+++..+ .++|-.=.== .....+++-++|||+.|-+|
T Consensus 140 ~a~~~~~~agad--fIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGGI---rt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 140 KACEIAKEAGAD--FVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGGI---RTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHHhCCC--EEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCCc---CCHHHHHHHHHcCcceEccC
Confidence 999999999999 45544554322223333444444442 2343221100 01456778889999999654
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.7 Score=56.29 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=140.4
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc-----cccccccC
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG-----NSLVGYSN 749 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg-----~n~vgy~~ 749 (1427)
+..++.+++++.|....+ .|+..+-+-||-..+-... .-.+-++.+++..|++.+..+..- ....|+
T Consensus 554 ~y~Ls~eeI~~~a~ea~~--~G~tev~i~gG~~p~~~~~----~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl-- 625 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWV--AGATEVCMQGGIHPELPGT----GYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGL-- 625 (843)
T ss_pred cccCCHHHHHHHHHHHHH--CCCCEEEEecCCCCCcCHH----HHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCC--
Confidence 567999999999998887 7999988876643221111 112346888888888877654220 011122
Q ss_pred CCcchHHHHHHHHHhcCCCEEE-----Eecc---------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFR-----VFDP---------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~r-----if~~---------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
..++.+++.+++|+|.+. ||+. .-..+.-.+.++.|++.|+ .+..++.|.-
T Consensus 626 ----~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi---~~~stmm~G~-------- 690 (843)
T PRK09234 626 ----SIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGL---RSSSTMMYGH-------- 690 (843)
T ss_pred ----CHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC---CcccceEEcC--------
Confidence 245678899999999773 3332 1123344578899999999 7777777762
Q ss_pred CCCHHHHHHHHHHHHHCCCC------EEE----Eccc----cC----cCCHHHHHHHHHHHHHHcCC-c-eEEEeecCCc
Q psy15244 816 KYSLNYYEDLAKQLVESGAQ------VLC----LKDM----AG----LLKPTAAKLLIGSFREKYPN-I-LIHVHTHDMA 875 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad------~i~----i~Dt----~G----~l~P~~~~~lv~~lr~~~p~-i-pi~~H~Hnd~ 875 (1427)
.-+.+..++.+..+.+.+.+ .|- -.+| .| .+++.+...++...|=-+|+ + .|..-. .++
T Consensus 691 ~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w-v~l 769 (843)
T PRK09234 691 VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW-VKL 769 (843)
T ss_pred CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh-hhc
Confidence 25778888888888887653 222 1222 12 26777787777777655653 2 232222 344
Q ss_pred chHHHHHHHHHHhcCCEEEecc-----ccCCCCC-C-CCcHHHHHHHHHhCCCC
Q psy15244 876 GTGVATTLACVKAGADIVDVAA-----DSMSGIC-S-QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD~av-----~GmG~~t-g-n~~lE~vv~~L~~~g~~ 922 (1427)
|. .....++.+||+-+++|+ +.++|.. | .++.+++....+..|+.
T Consensus 770 g~--~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~ 821 (843)
T PRK09234 770 GV--EGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP 821 (843)
T ss_pred CH--HHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 43 345788999999887765 4444433 2 35678888888877643
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.6 Score=49.41 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccC----------ChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL----------NSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~----------nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
..+.++.+.+.|+|.+-+-.+. ++.+.+.+.++.+++. +. -+.+- . .+ ..+.+...
T Consensus 113 ~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~---pv~vK--l-----~~---~~~~~~~~ 179 (289)
T cd02810 113 YVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDI---PLLVK--L-----SP---YFDLEDIV 179 (289)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCC---CEEEE--e-----CC---CCCHHHHH
Confidence 4456777788899998886653 2456677778888765 33 11111 1 22 25677899
Q ss_pred HHHHHHHHCCCCEEEEccccC-------------------cCCH---HHHHHHHHHHHHHcC-CceEEEeecCCcchHHH
Q psy15244 824 DLAKQLVESGAQVLCLKDMAG-------------------LLKP---TAAKLLIGSFREKYP-NILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G-------------------~l~P---~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~A 880 (1427)
++++.+.++|+|.|.+..+.+ +.-+ ....++++.+++.+| ++||-.=.--+.+ .
T Consensus 180 ~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~---~ 256 (289)
T cd02810 180 ELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG---E 256 (289)
T ss_pred HHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH---H
Confidence 999999999999998864432 1111 124667889998886 7887654443333 5
Q ss_pred HHHHHHHhcCCEEEeccccC
Q psy15244 881 TTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~Gm 900 (1427)
.+.+++.+|||.|-.+-.-|
T Consensus 257 da~~~l~~GAd~V~vg~a~~ 276 (289)
T cd02810 257 DVLEMLMAGASAVQVATALM 276 (289)
T ss_pred HHHHHHHcCccHheEcHHHH
Confidence 56667778999886654333
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.54 Score=57.28 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
..+.++++.++|+|.|.| |++. ..+..+.++|+.+|+.+|+++|-+.-=.| ...+..++++|||.|-+
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T----~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCC----HHHHHHHHHcCCCEEEE
Confidence 567899999999999998 7766 44688999999999999998876654333 45568899999999985
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.8 Score=53.65 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCEEEEeccCC----hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccC----CCC---CCCCCCHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLN----SVPNLVKGMDAVQQVTGGSTIVEATICYAGDL----TNP---NKKKYSLNYYED 824 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~n----d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~----~~p---~~~~~~~~~~~~ 824 (1427)
.+++.+|+++|.+.+-+=.|.- ++++-++.++.|+..|. .||+-|-..+.- ..+ ...-++++...+
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv---~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~ 162 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGV---SVEAELGHIGGKEDGIESEEETESLYTDPEEAKE 162 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT----EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCC---EEEEEeeeeeccCCCccccccccccccCHHHHHH
Confidence 4568999999999884433333 34466788999999999 889887766511 110 112246676666
Q ss_pred HHHHHHHCCCCEEEEccccC------cC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 825 LAKQLVESGAQVLCLKDMAG------LL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~Dt~G------~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+++ +.|+|.|.++ .| -. +|.-=.++++.+++.+|++||.+|. .+|+.--....|+..|+.-|+..
T Consensus 163 Fv~---~TgvD~LAva--iGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~ 235 (287)
T PF01116_consen 163 FVE---ETGVDALAVA--IGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKINIG 235 (287)
T ss_dssp HHH---HHTTSEEEE---SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEEEES
T ss_pred HHH---HhCCCEEEEe--cCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEEEEe
Confidence 554 4599987774 44 22 6666678899999998788877665 67888889999999999999876
Q ss_pred c
Q psy15244 897 A 897 (1427)
Q Consensus 897 v 897 (1427)
.
T Consensus 236 T 236 (287)
T PF01116_consen 236 T 236 (287)
T ss_dssp H
T ss_pred h
Confidence 4
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.22 E-value=4.2 Score=47.89 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccC-----------ChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL-----------NSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~-----------nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
....++++.+.|+|.|-+-.+. ++.+.+.+.++.+++. +. -+.+- . +| +.+..
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~---Pv~vK--l-----~~-----~~~~~ 168 (296)
T cd04740 104 FVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV---PVIVK--L-----TP-----NVTDI 168 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC---CEEEE--e-----CC-----CchhH
Confidence 3445666677899998884432 3556777788888876 44 22221 1 22 22357
Q ss_pred HHHHHHHHHCCCCEEEEccccCc------------------CCH----HHHHHHHHHHHHHcCCceEEEeecCCcch-HH
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGL------------------LKP----TAAKLLIGSFREKYPNILIHVHTHDMAGT-GV 879 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~------------------l~P----~~~~~lv~~lr~~~p~ipi~~H~Hnd~Gl-A~ 879 (1427)
.++++.+.++|+|.|.+.+|.+- +.+ ....++++.+++.+ ++||-.= -|. -.
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~----GGI~~~ 243 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGV----GGIASG 243 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCCEEEE----CCCCCH
Confidence 88999999999998887654321 111 12457888899887 7887542 233 23
Q ss_pred HHHHHHHHhcCCEEEeccccCC
Q psy15244 880 ATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~GmG 901 (1427)
..+.+++++|||.|..+-.-+.
T Consensus 244 ~da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 244 EDALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred HHHHHHHHcCCCEEEEchhhhc
Confidence 6778888999999988766554
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.4 Score=51.38 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~a 826 (1427)
++|.+|.+.|.+.+-+=.|--++ +.-++.++.|+..|. .||+-+-+.+. .++. ..++++...+++
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv---~VEaElG~vgg--~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGV---PVEAELGAILG--KEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEeccCCC--ccccccccccccCCHHHHHHHH
Confidence 46889999999998774444444 344678889999998 78887777642 2221 134666665544
Q ss_pred HHHHHCCCCEEEEcc--ccCcCC-HHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLKD--MAGLLK-PTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~D--t~G~l~-P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
+ +.|+|.+.++= .=|.-+ |.-=.++++.+++.. ++||.+|. .+|..-.....|++.|+.-|+...
T Consensus 163 ~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~-~vPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~T 230 (283)
T PRK07998 163 E---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS-PVPLVIHG--GSGIPPEILRSFVNYKVAKVNIAS 230 (283)
T ss_pred H---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC-CCCEEEeC--CCCCCHHHHHHHHHcCCcEEEECH
Confidence 4 45899776641 112111 443357888898887 78887776 558888889999999999997753
|
|
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.7 Score=48.67 Aligned_cols=209 Identities=10% Similarity=0.068 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC-CCc--------
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN-YSP-------- 752 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~-~~~-------- 752 (1427)
++.+.++.+.+ .|+..||+|++-.-.-. .-+.....+.++.+.+.. +..+..+..+.+...+.. .++
T Consensus 14 ~l~~~l~~~~~--~G~~~vEl~~~~~~~~~-~~~~~~~~~~l~~~~~~~-gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~ 89 (275)
T PRK09856 14 PIEHAFRDASE--LGYDGIEIWGGRPHAFA-PDLKAGGIKQIKALAQTY-QMPIIGYTPETNGYPYNMMLGDEHMRRESL 89 (275)
T ss_pred CHHHHHHHHHH--cCCCEEEEccCCccccc-cccCchHHHHHHHHHHHc-CCeEEEecCcccCcCccccCCCHHHHHHHH
Confidence 35556666677 79999999864220000 001112234444333322 223323322222211110 122
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--CCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--KKYS 818 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--~~~~ 818 (1427)
+.++..++.|...|.+.++++-.-. -++.++...+.|++.|. .+ ++-.. .|.. ...+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l--~iE~~----~~~~~~~~~t 160 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM---DL--ILEPL----TPYESNVVCN 160 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC---EE--EEecC----CCCcccccCC
Confidence 2344566788899999998864321 12467788888888887 22 11111 1211 1235
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccccCcC-CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLKDMAGLL-KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l-~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
.+.+.++++.+-. ...-...|+.-.. ......+.++.+ ++--.++|.+|..+-. +. -
T Consensus 161 ~~~~~~l~~~~~~--~~v~~~~D~~h~~~~~~~~~~~i~~~----~~rI~~vHi~D~~~~~---------------~~-~ 218 (275)
T PRK09856 161 ANDVLHALALVPS--PRLFSMVDICAPYVQAEPVMSYFDKL----GDKLRHLHIVDSDGAS---------------DT-H 218 (275)
T ss_pred HHHHHHHHHHcCC--CcceeEEeecchhcCCCCHHHHHHHh----CCcEEEEEEEcCCCCC---------------CC-C
Confidence 6666666654421 2222334774321 122233333333 3455799999987521 11 1
Q ss_pred ccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 898 DSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 898 ~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
... +.|..+...++.+|+..|++--+.+
T Consensus 219 ~~p--G~G~id~~~i~~~L~~~gy~g~~~l 246 (275)
T PRK09856 219 YIP--GEGKMPLRELMRDIIDRGYEGYCTV 246 (275)
T ss_pred cCC--CCCCCCHHHHHHHHHHcCCCceEEE
Confidence 122 3478899999999999987644444
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=93.14 E-value=0.33 Score=52.71 Aligned_cols=74 Identities=22% Similarity=0.371 Sum_probs=55.7
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCC
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSG 902 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~ 902 (1427)
++-++++.++|+|+|.| |-..-..|....+||+.+|+++ ..+---|-+ +...+.|.++|+|+|-+|++|.=+
T Consensus 54 ~~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADist-----~ee~~~A~~~G~D~I~TTLsGYT~ 125 (192)
T PF04131_consen 54 LKEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADIST-----LEEAINAAELGFDIIGTTLSGYTP 125 (192)
T ss_dssp HHHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SS-----HHHHHHHHHTT-SEEE-TTTTSST
T ss_pred HHHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeecCC-----HHHHHHHHHcCCCEEEcccccCCC
Confidence 34577888999999998 8888899999999999999997 555555533 678899999999999999999865
Q ss_pred CC
Q psy15244 903 IC 904 (1427)
Q Consensus 903 ~t 904 (1427)
-+
T Consensus 126 ~t 127 (192)
T PF04131_consen 126 YT 127 (192)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=93.08 E-value=5.1 Score=44.90 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=108.2
Q ss_pred CCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--
Q psy15244 672 SLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN-- 749 (1427)
Q Consensus 672 sl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~-- 749 (1427)
+++....+.+++.++++.-.+ .|+.++-+. |+ .+...++.+.++.... ...+||-.
T Consensus 9 t~L~p~~t~~~i~~lc~~A~~--~~~~avcv~---------------p~-~v~~a~~~l~~~~v~v----~tVigFP~G~ 66 (211)
T TIGR00126 9 TALKADTTEEDIITLCAQAKT--YKFAAVCVN---------------PS-YVPLAKELLKGTEVRI----CTVVGFPLGA 66 (211)
T ss_pred cCCCCCCCHHHHHHHHHHHHh--hCCcEEEeC---------------HH-HHHHHHHHcCCCCCeE----EEEeCCCCCC
Confidence 344556788999999888776 588777653 21 3455566555543222 12455532
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
.+-.+.-.-++.|++.|.|.+-+......+ +.+..-+..+++. |. .+-+ |--++ ..+.+.+
T Consensus 67 ~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~---~lKv-IlE~~--------~L~~~ei 134 (211)
T TIGR00126 67 STTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGV---LLKV-IIETG--------LLTDEEI 134 (211)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCC---eEEE-EEecC--------CCCHHHH
Confidence 344455556889999999998888777643 3333333333322 44 3433 22221 3555788
Q ss_pred HHHHHHHHHCCCCEEEEc--cccCcCCHHHHHHHHHHHHHHcCCceEEEe-ecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 823 EDLAKQLVESGAQVLCLK--DMAGLLKPTAAKLLIGSFREKYPNILIHVH-THDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~--Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H-~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
...++.+.++|||.|-.. =+.+-.+|.++..+-+.++.. ++|-.= ...| ...+++-+++||+.+-++
T Consensus 135 ~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~---v~IKaaGGirt----~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 135 RKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDT---IGVKASGGVRT----AEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccC---CeEEEeCCCCC----HHHHHHHHHHhhHHhCcc
Confidence 899999999999976543 112335667666655555432 333221 1112 356677788899988654
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=4.4 Score=49.48 Aligned_cols=191 Identities=19% Similarity=0.157 Sum_probs=116.7
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++-+++++.|.. .++..+|+|-+- |+... .+-++.|++..|+.++-.-+.=. -+++.+
T Consensus 182 ~~~~~A~~i~~~l~~--~~~~~iKvG~~L-------~~~~G-~~iVk~Lr~~~~~~~I~~DLK~~-------Di~~~v-- 242 (391)
T PRK13307 182 PDLEEVERVLSQLPK--SDHIIIEAGTPL-------IKKFG-LEVISKIREVRPDAFIVADLKTL-------DTGNLE-- 242 (391)
T ss_pred CCHHHHHHHHHhccc--ccceEEEECHHH-------HHHhC-HHHHHHHHHhCCCCeEEEEeccc-------ChhhHH--
Confidence 345677888888865 345678987321 22222 35678888887776654444322 233332
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
++.+.++|+|.+-+-... ..+.+..+++.+++.|. .+.. +. .+|. ...+ .++.+ ..++|.+
T Consensus 243 -v~~~a~aGAD~vTVH~ea-~~~ti~~ai~~akk~Gi---kvgV--D~----lnp~---tp~e----~i~~l-~~~vD~V 303 (391)
T PRK13307 243 -ARMAADATADAVVISGLA-PISTIEKAIHEAQKTGI---YSIL--DM----LNVE---DPVK----LLESL-KVKPDVV 303 (391)
T ss_pred -HHHHHhcCCCEEEEeccC-CHHHHHHHHHHHHHcCC---EEEE--EE----cCCC---CHHH----HHHHh-hCCCCEE
Confidence 777889999998887654 56678999999999998 5433 22 2441 2223 33333 5688988
Q ss_pred EEc---cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHH
Q psy15244 838 CLK---DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVS 914 (1427)
Q Consensus 838 ~i~---Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~ 914 (1427)
.+- |.-+. .| ..+.++.+|+..++++|.+= -|....|.-.++++|||++=+. +.-++..+..+.+.
T Consensus 304 llht~vdp~~~-~~--~~~kI~~ikk~~~~~~I~Vd----GGI~~eti~~l~~aGADivVVG----saIf~a~Dp~~aak 372 (391)
T PRK13307 304 ELHRGIDEEGT-EH--AWGNIKEIKKAGGKILVAVA----GGVRVENVEEALKAGADILVVG----RAITKSKDVRRAAE 372 (391)
T ss_pred EEccccCCCcc-cc--hHHHHHHHHHhCCCCcEEEE----CCcCHHHHHHHHHcCCCEEEEe----HHHhCCCCHHHHHH
Confidence 765 33232 12 33467778776446666654 4788888889999999986222 11234445444444
Q ss_pred HHH
Q psy15244 915 CLE 917 (1427)
Q Consensus 915 ~L~ 917 (1427)
.++
T Consensus 373 ~l~ 375 (391)
T PRK13307 373 DFL 375 (391)
T ss_pred HHH
Confidence 444
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.2 Score=46.62 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+++++.|.+ .|+..+|+. |-.++..+.++.+++..+.-+ .+++ |.-.| -+ .+.
T Consensus 23 ~~~~a~~~~~al~~--~Gi~~iEit----------~~~~~a~~~i~~l~~~~~~~p-~~~v-GaGTV------~~--~~~ 80 (213)
T PRK06552 23 SKEEALKISLAVIK--GGIKAIEVT----------YTNPFASEVIKELVELYKDDP-EVLI-GAGTV------LD--AVT 80 (213)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEEE----------CCCccHHHHHHHHHHHcCCCC-CeEE-eeeeC------CC--HHH
Confidence 66889999999998 899999985 225677788999998875321 1111 21111 11 233
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.|.++|.+.+- .+.-+ ...++++++.|. .. + | +.+|+..+. ++.++|+|.|.
T Consensus 81 ~~~a~~aGA~Fiv--sP~~~----~~v~~~~~~~~i---~~-----i------P--G~~T~~E~~----~A~~~Gad~vk 134 (213)
T PRK06552 81 ARLAILAGAQFIV--SPSFN----RETAKICNLYQI---PY-----L------P--GCMTVTEIV----TALEAGSEIVK 134 (213)
T ss_pred HHHHHHcCCCEEE--CCCCC----HHHHHHHHHcCC---CE-----E------C--CcCCHHHHH----HHHHcCCCEEE
Confidence 8899999998753 22222 344566788888 11 1 2 145665544 34569999999
Q ss_pred E--ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 839 L--KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 839 i--~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+ +|..| |. .++.++..+|++|+. -+-|....|.-.-+++|++.+-+
T Consensus 135 lFPa~~~G---~~----~ik~l~~~~p~ip~~----atGGI~~~N~~~~l~aGa~~vav 182 (213)
T PRK06552 135 LFPGSTLG---PS----FIKAIKGPLPQVNVM----VTGGVNLDNVKDWFAAGADAVGI 182 (213)
T ss_pred ECCcccCC---HH----HHHHHhhhCCCCEEE----EECCCCHHHHHHHHHCCCcEEEE
Confidence 8 34433 44 477778888888865 35688889999999999998733
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.55 Score=54.08 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=59.4
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 58 EKILIANR-SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 58 kkVLIagr-Geia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
++|||+|+ |+ +..+++.+.+.|+++++..............-...+..+ -++.+.+.++++++++|+|+-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g--------~l~~~~l~~~l~~~~i~~VID 71 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG--------ALDPQELREFLKRHSIDILVD 71 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC--------CCCHHHHHHHHHhcCCCEEEE
Confidence 37999997 66 999999999999998876555443222111111123322 256778889999999988874
Q ss_pred CCC-cccccH-HHHHHHHHCCCcee
Q psy15244 137 GYG-FLSERE-DFAKAVIGAGLEFI 159 (1427)
Q Consensus 137 g~g-flsE~~-~~a~~~e~~Gi~fi 159 (1427)
..- |..+.. ...++|.+.||+++
T Consensus 72 AtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 72 ATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 422 222221 34567777777766
|
This enzyme was found to be a monomer by gel filtration. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.8 Score=54.60 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=78.7
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCC---------hHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLN---------SVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~n---------d~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
....+.++...++++..+-|.+.-+ |+......-.++++. |. ..|.+++. ..++ .
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~Gr--L~Vgaavg------------~~~~-~ 242 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQ--LLVGAAIS------------TRPE-D 242 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCC--EEEEEEEC------------CCHH-H
Confidence 3345556667777887776665432 332222222334432 32 12222211 1223 3
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecccc
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADS 899 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~G 899 (1427)
.+.++.+.++|+|.|.| |++---++. +.+.|+.||+.+|+++|.. -.......+..+++||||.|.+++.+
T Consensus 243 ~~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g~ 313 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMGS 313 (495)
T ss_pred HHHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCcC
Confidence 78899999999999988 655434444 5778999999999999887 12333467889999999999986543
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=92.97 E-value=12 Score=44.79 Aligned_cols=211 Identities=14% Similarity=0.086 Sum_probs=127.2
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEecc-CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMW-GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~-ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
++.+++++.++.+.+ .|+..+-+. +|-..+. +. -+.-++-++.+++. ++..+.. . .|. +-.
T Consensus 91 ~s~eeI~~~~~~~~~--~g~~~~~l~~~g~~p~~--~~-~~~~~e~i~~i~~~-~~i~~~~--~----~g~------l~~ 152 (336)
T PRK06256 91 LDIEELIEAAKEAIE--EGAGTFCIVASGRGPSG--KE-VDQVVEAVKAIKEE-TDLEICA--C----LGL------LTE 152 (336)
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEecCCCCCc--hH-HHHHHHHHHHHHhc-CCCcEEe--c----CCc------CCH
Confidence 688999999998887 687655442 2221110 00 01122344555544 3333221 1 122 234
Q ss_pred HHHHHHHhcCCCEEEE-eccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRV-FDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~ri-f~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
+.+++.+++|++.+.+ +.+ | +.+....+++.++++|+ .+...+.+. - .-+.+.+.+
T Consensus 153 e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~G----l----gEt~ed~~~ 220 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIG----M----GESLEDRVE 220 (336)
T ss_pred HHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEe----C----CCCHHHHHH
Confidence 5678888999998876 333 4 23466688999999998 555444332 1 257788889
Q ss_pred HHHHHHHCCCCEEEE------ccc----cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 825 LAKQLVESGAQVLCL------KDM----AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i------~Dt----~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.++.+.+.|++.+.+ +.| ...+.|.++.+++..+|-.+|+..|-+=++-..-++-.- -+++ +||+.+
T Consensus 221 ~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~-~~~~-~g~~~~- 297 (336)
T PRK06256 221 HAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQ-PLGL-GGANSV- 297 (336)
T ss_pred HHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhH-HHHh-ccCcee-
Confidence 999999999987665 233 124678899999999998899888766555422222111 2333 698876
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
-++++=-..|++..++ ..+++..|+..
T Consensus 298 -~~g~~lt~~g~~~~~d-~~~~~~~g~~~ 324 (336)
T PRK06256 298 -IVGNYLTTVGQPATAD-LDMIEDLGFEI 324 (336)
T ss_pred -eECCcccCCCCChHHH-HHHHHHCCCCc
Confidence 3334434566665544 44677777654
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=3.2 Score=50.65 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=90.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..|+.+++.++++.+.+ .|+..|-+.||-. +++.+-++.++.+++. +....+..-|. . +-
T Consensus 44 ~~~~~e~~~~ii~~~~~--~g~~~v~~~GGEP------ll~~~~~~il~~~~~~--g~~~~i~TNG~---l-------l~ 103 (378)
T PRK05301 44 AELSTEEWIRVLREARA--LGALQLHFSGGEP------LLRKDLEELVAHAREL--GLYTNLITSGV---G-------LT 103 (378)
T ss_pred CCCCHHHHHHHHHHHHH--cCCcEEEEECCcc------CCchhHHHHHHHHHHc--CCcEEEECCCc---c-------CC
Confidence 35889999999999888 6999998887764 5666655666666653 33444444332 1 12
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
++.++...+.|++.+.|..--.+ .+....+++.+++.|. .+......+ +.+.+.+
T Consensus 104 ~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~---~v~i~~vv~---------~~N~~~i 171 (378)
T PRK05301 104 EARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGY---PLTLNAVIH---------RHNIDQI 171 (378)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCC---ceEEEEEee---------cCCHHHH
Confidence 34466777889998777554321 2344567778888887 544433333 5788999
Q ss_pred HHHHHHHHHCCCCEEEEc
Q psy15244 823 EDLAKQLVESGAQVLCLK 840 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~ 840 (1427)
.++++.+.+.|++.+.+.
T Consensus 172 ~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 172 PRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999988764
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=92.87 E-value=9.6 Score=42.16 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=103.2
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEecc--CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMW--GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~--ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
+......+.++.+.+ .|++.||+. .|- |-. -+. -.++.++.+++. ++.++...+... + .
T Consensus 8 ~~~~~~~~~~~~~~~--~g~d~i~~~~~Dg~-~~~---~~~-~~~~~v~~i~~~-~~~~v~v~lm~~----------~-~ 68 (210)
T TIGR01163 8 ADFARLGEEVKAVEE--AGADWIHVDVMDGH-FVP---NLT-FGPPVLEALRKY-TDLPIDVHLMVE----------N-P 68 (210)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEcCCCCC-CCC---Ccc-cCHHHHHHHHhc-CCCcEEEEeeeC----------C-H
Confidence 344567778888888 799999985 111 100 111 235778888864 555543322221 1 3
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
..|++.+.++|+|.+.+-+... +.+...++.+++.|. ..... . ++ ....+.+ +++. .++|
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~~--~~~~~~~~~~~~~g~---~~~~~--~-----~~---~t~~e~~----~~~~-~~~d 128 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEAS--EHIHRLLQLIKDLGA---KAGIV--L-----NP---ATPLEFL----EYVL-PDVD 128 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCc--hhHHHHHHHHHHcCC---cEEEE--E-----CC---CCCHHHH----HHHH-hhCC
Confidence 5689999999999977755433 456777788888887 33222 1 22 1223333 3332 3578
Q ss_pred EEEE----ccccCcCCHHHHHHHHHHHHHHc----CCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 836 VLCL----KDMAGLLKPTAAKLLIGSFREKY----PNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 836 ~i~i----~Dt~G~l~P~~~~~lv~~lr~~~----p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+.+ .-+.|-..+....+.++.+++.. |++||.+= .|....|.-.++++|||.+=+.
T Consensus 129 ~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~----GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 129 LVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD----GGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred EEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE----CCcCHHHHHHHHHcCCCEEEEC
Confidence 7655 22344322333445566666543 23566543 3777888888899999987443
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.26 Score=59.18 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|+..+|.++.||.+ .. |..-+.+|-+ .....|.||..|+|.++.|
T Consensus 16 ~g~~~~~~~~~g~~v-----------~~-~~~~~~~e~~----------------------k~~~~~~a~~~g~~~~~~~ 61 (371)
T PRK14875 16 EGKVAGWLVQEGDEV-----------EK-GDELLDVETD----------------------KITNEVEAPAAGTLRRQVA 61 (371)
T ss_pred eEEEEEEEcCCCCEe-----------CC-CCEEEEEEec----------------------ceeEEEecCCCeEEEEEEc
Confidence 578888988999886 22 3332322211 1235699999999999999
Q ss_pred cCCCEEecCCEEEEEEcCC
Q psy15244 1374 KVGQQVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieamK 1392 (1427)
++|+.|+.||+|+.++..+
T Consensus 62 ~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 62 QEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCCCEeCCCCEEEEEecCC
Confidence 9999999999999998653
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.23 Score=68.76 Aligned_cols=65 Identities=29% Similarity=0.527 Sum_probs=59.7
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE-----cCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS-----VMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie-----amKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|.|||+|+|++|+|++||.|++||+|++|| - +|.||.+|+|+++++++|+.|..|++|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~-----~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEM-----PVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeE-----EEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 346899999999999999999999999999853 4 5889999999999999999999999999885
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.1 Score=50.61 Aligned_cols=223 Identities=12% Similarity=0.102 Sum_probs=129.7
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
+..++.+++++.|+.. + .|+..+=+-+|-..+-.+.++ .+.++.+++..|++.+..++ +......+....-.
T Consensus 96 ~~~ls~eeI~~~a~~a-~--~G~~ei~iv~G~~p~~~~e~~----~e~i~~Ik~~~p~i~i~a~s-~~Ei~~~~~~~~~~ 167 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-P--SPITETHIVAGCFPSCNLAYY----EELFSKIKQNFPDLHIKALT-AIEYAYLSKLDNLP 167 (370)
T ss_pred cccCCHHHHHHHHHHH-h--cCCCEEEEEeCcCCCCCHHHH----HHHHHHHHHhCCCeeEEECC-HHHHHHHHhhcCCC
Confidence 4568999999999987 5 588777665554432111121 23467788888877755442 10000001111122
Q ss_pred HHHHHHHHHhcCCCEEEEe--cc------------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGIDIFRVF--DP------------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif--~~------------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
.++.+++.+++|++.+..- .. ....++-.++++.++++|+ .+..++.|.- .-+++
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi---~~~sgmi~G~--------gEt~e 236 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGI---PSNATMLCYH--------RETPE 236 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---cccCceEEeC--------CCCHH
Confidence 4666888999999876642 11 1123556688999999999 6666666641 35778
Q ss_pred HHHHHHHHHHHCCCCEEEE----------cccc-C-------cCCHHHHHHHHHHHH---HHcCCceEEEeecCCcchHH
Q psy15244 821 YYEDLAKQLVESGAQVLCL----------KDMA-G-------LLKPTAAKLLIGSFR---EKYPNILIHVHTHDMAGTGV 879 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i----------~Dt~-G-------~l~P~~~~~lv~~lr---~~~p~ipi~~H~Hnd~GlA~ 879 (1427)
..++.+..+.+.+.+.+.+ ++|- | ...+.....++.-.| .++|.+...+ +..| .
T Consensus 237 drv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~G--~ 311 (370)
T PRK05926 237 DIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYLG--I 311 (370)
T ss_pred HHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhcC--H
Confidence 8888888888886654322 2332 1 133443333333322 2234444444 3334 4
Q ss_pred HHHHHHHHhcCCEEEecccc-----CCC-CCC-CCcHHHHHHHHHhCCC
Q psy15244 880 ATTLACVKAGADIVDVAADS-----MSG-ICS-QPAMGTIVSCLENTDK 921 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~G-----mG~-~tg-n~~lE~vv~~L~~~g~ 921 (1427)
..+..|+.+||+-+++|+.. +.| .++ ..+.+++....+..|+
T Consensus 312 ~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~ 360 (370)
T PRK05926 312 EVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGR 360 (370)
T ss_pred HHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCC
Confidence 56688999999999998753 111 122 1245666666665554
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=92.73 E-value=5.1 Score=46.31 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc------cccCcCCHHH---HHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLK------DMAGLLKPTA---AKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~------Dt~G~l~P~~---~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
..+.+..++.+++..+.|||.|-|. +..++..-.+ +..+|+.+++.+ ++||.+-+=+ ...+.+|+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT~~-----~~v~e~al 93 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFR-----AEVARAAL 93 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeCCC-----HHHHHHHH
Confidence 3689999999999999999999984 2222222233 444578888877 8899886655 45667899
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC------CCC--C-----------hhhHHHHHHHHHHHhCCCCCC
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR------CGI--D-----------LHDVCDYSSYWRKVRELYAPA 947 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~------tgi--d-----------l~~L~~l~~~v~~~~g~~~~~ 947 (1427)
++|+++|+-- +|. ...+. ++..+++.|.. .++ + .+.+..+.+.++.....-++.
T Consensus 94 ~~G~~iINdi-sg~---~~~~~---~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~ 166 (257)
T cd00739 94 EAGADIINDV-SGG---SDDPA---MLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVAR 166 (257)
T ss_pred HhCCCEEEeC-CCC---CCChH---HHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999998743 332 22233 33333333211 111 0 123334455566666666665
Q ss_pred CCcccccch-hhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCC-------ccHHHHHHHHHHCCC---CHHH
Q psy15244 948 HNLLWRCGI-DLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPG-------GQYTNLKFRTMSFGL---DFED 1016 (1427)
Q Consensus 948 ~kpivG~~~-f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pG-------g~~snl~~ql~~~gl---~~~e 1016 (1427)
++=++--++ |... ..+.-.+.+.-..+..+..|-+.|.++.-+++.+-+ +....+...+.+.|. |-.+
T Consensus 167 ~~Ii~DPg~gf~ks-~~~~~~~l~~i~~l~~~~~pil~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~~Ga~iiRvHd 245 (257)
T cd00739 167 NRIILDPGIGFGKT-PEHNLELLRRLDELKQLGLPVLVGASRKSFIGALLGREPKDRDWGTLALSALAAANGADIVRVHD 245 (257)
T ss_pred HHEEEecCCCcccC-HHHHHHHHHHHHHHHhCCCcEEEEecccHHHHHhcCCCccccchhHHHHHHHHHHcCCCEEEeCC
Confidence 553332222 4333 344433333333343345455666655444443322 222344455667776 6555
Q ss_pred HHHHH
Q psy15244 1017 VKRAY 1021 (1427)
Q Consensus 1017 v~~~~ 1021 (1427)
|.+..
T Consensus 246 v~~~~ 250 (257)
T cd00739 246 VKATR 250 (257)
T ss_pred HHHHH
Confidence 55543
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.4 Score=52.61 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=80.4
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++...+.|++.+.|-.. ++.|.. .++.+.+.|+ ..|--|| ..+++.+...++.+.+.|.+.|.
T Consensus 103 vd~l~~~~v~~~KI~S~--~~~n~~-LL~~va~~gk------PvilstG--------~~t~~Ei~~Av~~i~~~g~~~i~ 165 (327)
T TIGR03586 103 VDFLESLDVPAYKIASF--EITDLP-LIRYVAKTGK------PIIMSTG--------IATLEEIQEAVEACREAGCKDLV 165 (327)
T ss_pred HHHHHHcCCCEEEECCc--cccCHH-HHHHHHhcCC------cEEEECC--------CCCHHHHHHHHHHHHHCCCCcEE
Confidence 66667788998887653 333332 3444555677 1223332 46899999999999999987666
Q ss_pred E--ccccCcCCHHHHHHH--HHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 839 L--KDMAGLLKPTAAKLL--IGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 839 i--~Dt~G~l~P~~~~~l--v~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
| | +.+.-+|.....| |..|++.+ ++||++=-|- .| ....++|+.+||++|.
T Consensus 166 LlhC-~s~YP~~~~~~nL~~i~~lk~~f-~~pVG~SDHt-~G--~~~~~aAva~GA~iIE 220 (327)
T TIGR03586 166 LLKC-TSSYPAPLEDANLRTIPDLAERF-NVPVGLSDHT-LG--ILAPVAAVALGACVIE 220 (327)
T ss_pred EEec-CCCCCCCcccCCHHHHHHHHHHh-CCCEEeeCCC-Cc--hHHHHHHHHcCCCEEE
Confidence 6 6 6666666555443 78899999 8999996564 44 5778999999999886
|
|
| >PLN02226 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.3 Score=60.35 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
+|...+|.+++||.+ .. |..-+.+|-+ .....|.||..|+|.+|++
T Consensus 105 eG~I~~w~v~~GD~V-----------~~-Gq~L~~VEtd----------------------K~~~eI~Ap~~G~v~~ilv 150 (463)
T PLN02226 105 DGTLATFLKKPGERV-----------QA-DEAIAQIETD----------------------KVTIDIASPASGVIQEFLV 150 (463)
T ss_pred eEEEEEEEeCCCCEe-----------cC-CCEEEEEEec----------------------ceeeEEecCCCeEEEEEEe
Confidence 577888999999887 22 3322322211 1356799999999999999
Q ss_pred cCCCEEecCCEEEEEEc
Q psy15244 1374 KVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~iea 1390 (1427)
++||.|+.||+|+.|+.
T Consensus 151 ~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 151 KEGDTVEPGTKVAIISK 167 (463)
T ss_pred CCCCEecCCCEEEEecc
Confidence 99999999999999975
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.50 E-value=2.7 Score=48.63 Aligned_cols=212 Identities=12% Similarity=0.105 Sum_probs=127.5
Q ss_pred HHHHHhhcCCccEEeccCCC-chhhhhhccccChHHHH-HHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHh
Q psy15244 687 SPFVANRFNNLYSLEMWGGA-VSHTCLKFLKECPWERL-AELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQ 764 (1427)
Q Consensus 687 a~~l~~~~~G~~~iE~~gga-tfd~~~rfl~e~p~erl-~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~ 764 (1427)
|..+.+ .||..|=..|.. ++.-.++-++...|+.+ ...+.....+.+-.+.=. --||.. |.|+ ...|+.+.+
T Consensus 31 A~la~~--aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~--dtGfG~-~~nv-artV~~~~~ 104 (289)
T COG2513 31 ALLAER--AGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDI--DTGFGE-ALNV-ARTVRELEQ 104 (289)
T ss_pred HHHHHH--cCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEec--cCCCCc-HHHH-HHHHHHHHH
Confidence 334445 799988765432 22223444455556543 333433333333333322 247877 7784 458899999
Q ss_pred cCCCEEEEeccCCh-------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 765 AGIDIFRVFDPLNS-------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 765 ~Gid~~rif~~~nd-------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
+|+--++|=|.... ++.|-.-|++++++.. -....|+--.|-.. .--++.-++-++..++
T Consensus 105 aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~---~~~fvi~ARTda~~----~~~ld~AI~Ra~AY~e 177 (289)
T COG2513 105 AGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARR---DPDFVIIARTDALL----VEGLDDAIERAQAYVE 177 (289)
T ss_pred cCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhcc---CCCeEEEeehHHHH----hccHHHHHHHHHHHHH
Confidence 99999999998873 4566666666666654 12233333322111 1227888899999999
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
+|||.|... |+-.++++..+.++++ . .+|+-+-.+--..+-... .--++|+++|-..... -|+.+..++.
T Consensus 178 AGAD~if~~---al~~~e~i~~f~~av~--~-pl~~N~t~~g~tp~~~~~--~L~~~Gv~~V~~~~~~--~raa~~a~~~ 247 (289)
T COG2513 178 AGADAIFPE---ALTDLEEIRAFAEAVP--V-PLPANITEFGKTPLLTVA--ELAELGVKRVSYGLTA--FRAALKAAEQ 247 (289)
T ss_pred cCCcEEccc---cCCCHHHHHHHHHhcC--C-CeeeEeeccCCCCCcCHH--HHHhcCceEEEECcHH--HHHHHHHHHH
Confidence 999999954 6777777777766665 3 255555444433433333 3346799999554433 4566667777
Q ss_pred HHHHHHhCCC
Q psy15244 912 IVSCLENTDK 921 (1427)
Q Consensus 912 vv~~L~~~g~ 921 (1427)
++..+...|.
T Consensus 248 ~~~~i~~~gt 257 (289)
T COG2513 248 AAREIRREGT 257 (289)
T ss_pred HHHHHHhcCc
Confidence 7777776653
|
|
| >PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.31 Score=59.75 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=50.2
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|...+|.+++||.+ .. |..-+.+|-+- ....|.||..|+|.+++|
T Consensus 58 eg~I~~w~v~~Gd~V-----------~~-Gd~L~~vEtdK----------------------~~~ei~Ap~~G~v~~i~v 103 (418)
T PTZ00144 58 EGTVVEWKKKVGDYV-----------KE-DEVICIIETDK----------------------VSVDIRAPASGVITKIFA 103 (418)
T ss_pred eEEEEEEEeCCCCEe-----------CC-CCEEEEEEEcc----------------------eEEEEecCCCeEEEEEEe
Confidence 588899999999997 22 44334433221 345789999999999999
Q ss_pred cCCCEEecCCEEEEEEcC
Q psy15244 1374 KVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieam 1391 (1427)
++||.|+.|++|++|+.-
T Consensus 104 ~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 104 EEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCCEecCCCEEEEEcCC
Confidence 999999999999999754
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=6.4 Score=44.68 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEE
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+.++.||+..|+.++-.-+- +++ ...+++.+.++|+|.+-+-...+. +.+..+++.+++.|. .+.
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm----------~~~-p~~~i~~~~~~Gad~itvH~ea~~-~~~~~~l~~ik~~G~---~~g 118 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLM----------VSN-PEKWVDDFAKAGASQFTFHIEATE-DDPKAVARKIREAGM---KVG 118 (228)
T ss_pred HHHHHHHhcCCCCCEEEEEC----------CCC-HHHHHHHHHHcCCCEEEEeccCCc-hHHHHHHHHHHHCCC---eEE
Confidence 56788888877887665553 233 455788888999999877665543 337889999999998 665
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHH-----HHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCc
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLA-----KQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMA 875 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a-----~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~ 875 (1427)
.++. |. ++.+.+..+. ..+.-+.++ ....|...-....+.++.+++.++...|.+ |-
T Consensus 119 val~-------p~---t~~e~l~~~l~~~~vD~Vl~m~v~----pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dG 180 (228)
T PTZ00170 119 VAIK-------PK---TPVEVLFPLIDTDLVDMVLVMTVE----PGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DG 180 (228)
T ss_pred EEEC-------CC---CCHHHHHHHHccchhhhHHhhhcc----cCCCCcEecHHHHHHHHHHHHhcccCeEEE----CC
Confidence 5443 32 3444444332 222211111 112233333345556778888776544443 56
Q ss_pred chHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
|.-..|.-.+.++|||++=+ | +.-+++++.++.+..++
T Consensus 181 GI~~~ti~~~~~aGad~iVv---G-saI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 181 GINLETIDIAADAGANVIVA---G-SSIFKAKDRKQAIELLR 218 (228)
T ss_pred CCCHHHHHHHHHcCCCEEEE---c-hHHhCCCCHHHHHHHHH
Confidence 88888999999999998833 2 22345555555555544
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=92.42 E-value=29 Score=42.55 Aligned_cols=215 Identities=10% Similarity=0.043 Sum_probs=128.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhh-cccc-ChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK-FLKE-CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~r-fl~e-~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
.++.+++++.|+.+.+ .|+..+=+..+ .+ ..++ .+++++.++-+.+....+.... ..|+ .
T Consensus 115 ~Ls~EeIl~~a~~~~~--~G~~~~~ivts------~rg~~~e~~~~e~i~eiir~ik~~~l~i~~----s~G~------l 176 (379)
T PLN02389 115 LMSKDDVLEAAKRAKE--AGSTRFCMGAA------WRDTVGRKTNFNQILEYVKEIRGMGMEVCC----TLGM------L 176 (379)
T ss_pred cCCHHHHHHHHHHHHH--cCCCEEEEEec------ccCCCCChhHHHHHHHHHHHHhcCCcEEEE----CCCC------C
Confidence 5899999999998887 68887644210 00 0122 2355554444444333333221 1232 2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
..+.+++.+++|+|.+.+-.-.+ +++.-...++.+++.|+ .+...+.+. - .-+.+..+
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi---~v~sg~IiG----l----gEt~edrv 245 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGI---SVCSGGIIG----L----GEAEEDRV 245 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC---eEeEEEEEC----C----CCCHHHHH
Confidence 34567888899999877644433 23455678899999999 666665554 1 24667777
Q ss_pred HHHHHHHHC--CCCEEEE------ccc--c--CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCC
Q psy15244 824 DLAKQLVES--GAQVLCL------KDM--A--GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891 (1427)
Q Consensus 824 ~~a~~l~~~--Gad~i~i------~Dt--~--G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad 891 (1427)
+.+..+.+. ..+.+.| +.| . ..++|.+..+.|...|-.+|+..|.+-.-- .-++......|+.+||+
T Consensus 246 ~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN 324 (379)
T PLN02389 246 GLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGAN 324 (379)
T ss_pred HHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCC
Confidence 777888777 4565543 244 2 247788899999999888887655432211 11122345789999999
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 892 ~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
.+= ++++==.|...+.++=..+++..|+..
T Consensus 325 ~~~--~g~~~Ltt~g~~~~~d~~~~~~lg~~~ 354 (379)
T PLN02389 325 SIF--TGDKLLTTPNNDFDADQAMFKELGLIP 354 (379)
T ss_pred EEE--ECCcccCCCCCChHHHHHHHHHcCCCc
Confidence 762 222201133345555567778777654
|
|
| >PF13437 HlyD_3: HlyD family secretion protein | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.2 Score=49.26 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.4
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK 1392 (1427)
.|.||+.|.|..+.++.|+.|.+|++|+.|..++
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTD 34 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccc
Confidence 3789999999999999999999999999998753
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.5 Score=52.34 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCc
Q psy15244 718 CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGST 797 (1427)
Q Consensus 718 ~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~ 797 (1427)
-||+.++.|.+...+.-+..+.. |-+.. .++...+.|++.+.|... ++.|.. .++++.+.|+
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~st----------pfd~~--svd~l~~~~v~~~KIaS~--~~~n~p-LL~~~A~~gk--- 134 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLST----------PFDLE--SADFLEDLGVPRFKIPSG--EITNAP-LLKKIARFGK--- 134 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEE----------eCCHH--HHHHHHhcCCCEEEECcc--cccCHH-HHHHHHhcCC---
Confidence 56677777777766555555543 22322 367777889999888654 333322 3455566677
Q ss_pred EEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEE--ccccCcCCHHHHHHH--HHHHHHHcCCceEEEee
Q psy15244 798 IVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ--VLCL--KDMAGLLKPTAAKLL--IGSFREKYPNILIHVHT 871 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad--~i~i--~Dt~G~l~P~~~~~l--v~~lr~~~p~ipi~~H~ 871 (1427)
..|.-|| -.+++.+...++.+.+.|.+ .|.| | +.+.-.|..-..| |..|++.+ ++||++=.
T Consensus 135 ---PvilStG--------matl~Ei~~Av~~i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f-~~pVG~Sd 201 (329)
T TIGR03569 135 ---PVILSTG--------MATLEEIEAAVGVLRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAF-DLPVGYSD 201 (329)
T ss_pred ---cEEEECC--------CCCHHHHHHHHHHHHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHh-CCCEEECC
Confidence 2233343 46899999999999999975 2444 5 5566666554443 78899999 79999966
Q ss_pred cCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 872 HDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 872 Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
|-+ | ....++|+..||++|.-
T Consensus 202 Ht~-G--~~~~~aAvalGA~iIEk 222 (329)
T TIGR03569 202 HTL-G--IEAPIAAVALGATVIEK 222 (329)
T ss_pred CCc-c--HHHHHHHHHcCCCEEEe
Confidence 653 4 56779999999999863
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.18 Score=57.33 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=41.6
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecC
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~ 1412 (1427)
+...++|..-++.|++||+|++||+|+.=-.. -+....||++|+|++|.--+
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK~~-p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFEDKKN-PGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEeeCCC-CCcEEecCCCeEEEEEecCC
Confidence 45578898999999999999999999864211 34568999999999887533
|
The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process |
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=92.18 E-value=3.8 Score=49.59 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=88.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..|+++++.++++.+.+ .|+..|-+.||-- +++++-++-++.+++. +..+.+..-|. . +-
T Consensus 35 ~~l~~e~~~~ii~~~~~--~g~~~v~~~GGEP------ll~~~~~~ii~~~~~~--g~~~~l~TNG~---l-------l~ 94 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAE--LGVLQLHFSGGEP------LARPDLVELVAHARRL--GLYTNLITSGV---G-------LT 94 (358)
T ss_pred CCCCHHHHHHHHHHHHh--cCCcEEEEeCccc------cccccHHHHHHHHHHc--CCeEEEEeCCc---c-------CC
Confidence 35889999999999988 6999998888754 4666655666666653 23344433331 1 12
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
++.++...++|++.+.|..--.+ .+....+++.+++.|. .+......+ +.+.+.+
T Consensus 95 ~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~---~v~v~~vv~---------~~N~~~l 162 (358)
T TIGR02109 95 EARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGL---PLTLNFVIH---------RHNIDQI 162 (358)
T ss_pred HHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCC---ceEEEEEec---------cCCHHHH
Confidence 34567777899998776543321 1233456677777887 444433333 6788999
Q ss_pred HHHHHHHHHCCCCEEEE
Q psy15244 823 EDLAKQLVESGAQVLCL 839 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i 839 (1427)
.++++.+.+.|++.+.+
T Consensus 163 ~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 163 PEIIELAIELGADRVEL 179 (358)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999998876
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.6 Score=47.20 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=62.0
Q ss_pred CEEEEEc----CCHHHHHHHHHHHHcCCEEEEEecCCCcc---Ccccccc------ceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 58 EKILIAN----RSEVAIRVARACNEMGIKSVGIYSEQDKF---SAHRTKV------DQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 58 kkVLIag----rGeia~riiraa~elGi~~vav~s~~d~~---s~~~~~a------De~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
|+|.|+| .+..+.++++.+++.|++++.|....+.. ..+..+. |-++..- ++ ....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~---~~----~~~~~~v~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV---PP----DKVPEIVD 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S----H----HHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc---CH----HHHHHHHH
Confidence 5788998 56679999999999999999997665431 1222222 2222211 00 12456777
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNV 165 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~ea 165 (1427)
-|.+.++..++-..| .++.++.+.+++.|+.++||+---
T Consensus 74 ~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp HHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-HH
T ss_pred HHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcce
Confidence 777788998887776 466788999999999999987543
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.2 Score=51.09 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+.+|||+|+..-++.+++.+.+.|+++++........ . ... ...+..+ ...+.+.+.++++++++++|+
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~-~-~~~-~~~v~~G-------~l~~~~~l~~~l~~~~i~~VI 70 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG-P-ADL-PGPVRVG-------GFGGAEGLAAYLREEGIDLVI 70 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC-c-ccC-CceEEEC-------CCCCHHHHHHHHHHCCCCEEE
Confidence 46789999988889999999999999876554433221 1 111 1122333 223889999999999998887
Q ss_pred eC-CCcccccH-HHHHHHHHCCCcee
Q psy15244 136 PG-YGFLSERE-DFAKAVIGAGLEFI 159 (1427)
Q Consensus 136 pg-~gflsE~~-~~a~~~e~~Gi~fi 159 (1427)
-. .-|..+-. ...++|.+.||+++
T Consensus 71 DATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 71 DATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred ECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 44 23333322 34677888888876
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.6 Score=45.07 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=73.0
Q ss_pred CcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccc
Q psy15244 209 FPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288 (1427)
Q Consensus 209 yPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~q 288 (1427)
-|+.|||....-.--=.++.+.++|...- ....+..+++.+.++-..|+.+.++. |+++.....
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~~---g~vv~~s~Y----- 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIVD---GEVVTGSPY----- 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEEC---CEEEEEeec-----
Confidence 48999999855443334666666655211 12346789999999988899988864 466654221
Q ss_pred cccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcC-CCCeEEEEEEEcCCCcEEEEeeCCCCC
Q psy15244 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLG-YSNAGTVEFLLDKDDNFYFIEVNPRLQ 350 (1427)
Q Consensus 289 r~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg-~~G~~~VEflvd~dG~~yfIEINpRl~ 350 (1427)
+.. +....+ .++.+.+.+.+++.. .-.+..+++=++.+|+.++||+|+=-.
T Consensus 66 ~~~-------~~~~~~----~~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 66 RGD-------WDLEPD----PDVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred CCC-------cccCCC----HHHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCccc
Confidence 110 111122 344555555555442 336788999999888999999999443
|
|
| >COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.37 Score=57.67 Aligned_cols=67 Identities=36% Similarity=0.473 Sum_probs=0.0
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcC-----------------------------------------------
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM----------------------------------------------- 1391 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam----------------------------------------------- 1391 (1427)
.|.+..+|.|.+|.|+..+.|++||+|+.|.--
T Consensus 55 ~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~ 134 (352)
T COG1566 55 PIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQN 134 (352)
T ss_pred EEcCcCceEEEEEEecCCCEecCCCeEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------------------------------------------------------------CceeeeecC
Q psy15244 1392 -----------------------------------------------------------------------KTETLIHAS 1400 (1427)
Q Consensus 1392 -----------------------------------------------------------------------Kme~~i~Ap 1400 (1427)
=--+.|+||
T Consensus 135 ~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP 214 (352)
T COG1566 135 ELERRAELAQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAP 214 (352)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECC
Q ss_pred CCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1401 ADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1401 ~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
++|+|.+..+.+|+.|.+|.+|+.+
T Consensus 215 ~dG~V~~~~v~~G~~V~~G~~l~al 239 (352)
T COG1566 215 VDGYVTNLSVRVGQYVSAGTPLMAL 239 (352)
T ss_pred CCceEEeecccCCCeecCCCceEEE
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=91.94 E-value=12 Score=47.05 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=128.3
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHH----HHHHHhCCC-CceeeeecccccccccC
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERL----AELRELIPN-IPFQMILRGNSLVGYSN 749 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl----~~lr~~~p~-~~~qml~Rg~n~vgy~~ 749 (1427)
..+++.+++++-++.+.+ .|+..+=+-+|-.. ...+++.+ +.+++..+. ..+. . |+...
T Consensus 112 r~~Ls~EEI~~ea~~~~~--~G~~~i~LvsGe~p-------~~~~~eyi~e~i~~I~~~~~~~g~i~----~---v~ini 175 (469)
T PRK09613 112 RKKLTQEEIREEVKALED--MGHKRLALVAGEDP-------PNCDIEYILESIKTIYSTKHGNGEIR----R---VNVNI 175 (469)
T ss_pred ceECCHHHHHHHHHHHHH--CCCCEEEEEeCCCC-------CCCCHHHHHHHHHHHHHhccccCcce----e---eEEEe
Confidence 356899999999999988 78887665444320 12344444 444432211 1110 0 00111
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
.+-+ .+-.++.+++|++.+.+|--+. +.+.=..+++.|+++|+. .+...+-+ +-++
T Consensus 176 g~lt--~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~--~Vg~G~L~----GLge- 246 (469)
T PRK09613 176 APTT--VENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGID--DVGIGVLF----GLYD- 246 (469)
T ss_pred ecCC--HHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCC--eeCeEEEE----cCCC-
Confidence 2222 3347888999999988887664 334445688999999991 13322222 2332
Q ss_pred CCCCHHHHHHHHHHHH---HCCCCEEEEc------cc-----cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH
Q psy15244 815 KKYSLNYYEDLAKQLV---ESGAQVLCLK------DM-----AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~---~~Gad~i~i~------Dt-----~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A 880 (1427)
++++.-.++.-++.|. ..|+|.|.+. +| --.+.+.+..++|..+|=.+|...|-+-++-...+=
T Consensus 247 ~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r-- 324 (469)
T PRK09613 247 YKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELR-- 324 (469)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHH--
Confidence 1233222222233332 2267766543 43 123677899999999999999998989888875533
Q ss_pred HHHHHHHhcCCEEEeccc-cCCCCCC--------C------CcHHHHHHHHHhCCCCC
Q psy15244 881 TTLACVKAGADIVDVAAD-SMSGICS--------Q------PAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~-GmG~~tg--------n------~~lE~vv~~L~~~g~~t 923 (1427)
-..+..|++.+++... +.||-+- | -++++|+..|...|+.+
T Consensus 325 --~~~~~~gvt~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p 380 (469)
T PRK09613 325 --REVLELGVSQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIP 380 (469)
T ss_pred --HHHHhhcceeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeE
Confidence 3556679998864333 4444331 1 16677777777766654
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.58 Score=56.95 Aligned_cols=150 Identities=11% Similarity=0.149 Sum_probs=77.6
Q ss_pred CCCCCEEEEE----c-CCHHHHHHHHHHHHcCCEEEEEecCCCccCcc-----ccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 54 PKTMEKILIA----N-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAH-----RTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 54 ~~~~kkVLIa----g-rGeia~riiraa~elGi~~vav~s~~d~~s~~-----~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
..+++||||+ | .|.++..+++.+.+.|++++++.......... ..+++.. ..+... -..|...+.
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~---~~~v~~--v~~D~~d~~ 123 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS---SAGVKT--VWGDPADVK 123 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh---hcCceE--EEecHHHHH
Confidence 3567899999 7 69999999999999999999887554321000 0000000 000000 012344444
Q ss_pred HHHHhcCCCEEEeCCCcccc-cHHHHHHHHHCCC-ceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCc-cccCCCHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSE-REDFAKAVIGAGL-EFIGPAPNVLKTLGDKVLARDAALKADVPIIPGT-TEPVTDVDKV 200 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE-~~~~a~~~e~~Gi-~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~-~~~v~s~eea 200 (1427)
++....++|.|+-..+...+ ...+.++|.+.|+ .|+-.|...+ .++. .+.|..... ..+..+..++
T Consensus 124 ~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~v--yg~~---------~~~p~~E~~~~~p~~sK~~~ 192 (378)
T PLN00016 124 SKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGV--YKKS---------DEPPHVEGDAVKPKAGHLEV 192 (378)
T ss_pred hhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhh--cCCC---------CCCCCCCCCcCCCcchHHHH
Confidence 44445679988865442211 1256778888887 3554443322 2220 011111100 0011133455
Q ss_pred HHHHHhcCCc-EEEeecCCC
Q psy15244 201 KEFCDEVEFP-VILKAAFGG 219 (1427)
Q Consensus 201 ~~~a~~iGyP-vVVKP~~Gg 219 (1427)
+.++++.++| +++.|..-.
T Consensus 193 E~~l~~~~l~~~ilRp~~vy 212 (378)
T PLN00016 193 EAYLQKLGVNWTSFRPQYIY 212 (378)
T ss_pred HHHHHHcCCCeEEEeceeEE
Confidence 5566677888 577886433
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=5.9 Score=44.30 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+++++.+.. -+..+|++-+- ++...| +-++.+|+.. ++.+-+-+- .. .|-...+
T Consensus 14 ~~~~~~~~~~~~~~---~~~~vk~g~~l-------~~~~G~-~~v~~ir~~~-~i~~D~k~~--------di-~~~~~~~ 72 (215)
T PRK13813 14 DRERALKIAEELDD---YVDAIKVGWPL-------VLASGL-GIIEELKRYA-PVIADLKVA--------DI-PNTNRLI 72 (215)
T ss_pred CHHHHHHHHHhccc---cCCEEEEcHHH-------HHhhCH-HHHHHHHhcC-CEEEEeecc--------cc-HHHHHHH
Confidence 35566677766654 45678887321 223333 5677777653 222111110 00 1224456
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.+.+.|.|.+-+..... .+.+..+++.+++.|. .+-..+..+ .+.....-.+++..++....+.|++...
T Consensus 73 ~~~~~~~gad~vtvh~e~g-~~~l~~~i~~~~~~g~---~~~v~~~~~----~~~~~~~~~~~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 73 CEAVFEAGAWGIIVHGFTG-RDSLKAVVEAAAESGG---KVFVVVEMS----HPGALEFIQPHADKLAKLAQEAGAFGVV 144 (215)
T ss_pred HHHHHhCCCCEEEEcCcCC-HHHHHHHHHHHHhcCC---eEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 6888899999887776644 4678889999999998 555544332 2211122245677777778888987553
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH--HHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA--TTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A--n~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
+. ....+.++.+++..+. ++. . =|-|.... |.-.++++|||++-..- .-...+...+.+..|
T Consensus 145 ~~--------~~~~~~i~~l~~~~~~-~~~--i-vdgGI~~~g~~~~~~~~aGad~iV~Gr----~I~~~~d~~~~~~~l 208 (215)
T PRK13813 145 AP--------ATRPERVRYIRSRLGD-ELK--I-ISPGIGAQGGKAADAIKAGADYVIVGR----SIYNAADPREAAKAI 208 (215)
T ss_pred EC--------CCcchhHHHHHHhcCC-CcE--E-EeCCcCCCCCCHHHHHHcCCCEEEECc----ccCCCCCHHHHHHHH
Confidence 21 1123445677766632 111 1 22344443 47789999999874431 223344555656555
Q ss_pred H
Q psy15244 917 E 917 (1427)
Q Consensus 917 ~ 917 (1427)
+
T Consensus 209 ~ 209 (215)
T PRK13813 209 N 209 (215)
T ss_pred H
Confidence 4
|
|
| >cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.45 Score=48.65 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=39.4
Q ss_pred CCCceecCCCeEEEEEEecCCCE-Eec--C-CEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQ-VKK--N-DVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~-V~~--G-~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..+.|.||..|+|..+.-..-.- ++. | +.|+.+... +....|.=-++++++||.|.+||+|+++.
T Consensus 34 ~~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGid------Tv~l~g~gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 34 SDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGID------TVKLNGEGFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred cCCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeee------eeecCCCceEEEecCCCEEcCCCEEEEEc
Confidence 45789999999997764322111 111 2 222222211 11123444568899999999999999875
|
The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.8 Score=50.21 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-----CC-------
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-----PN------- 813 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-----p~------- 813 (1427)
+.|.+|.++|.+.|-+=.|.- +++.-++.+++|+..|. .||+-|-..+..-. .+
T Consensus 89 e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv---~VEaELG~vgg~e~~~~g~~~~~~~~~~ 165 (347)
T PRK09196 89 ATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGV---SVEGELGCLGSLETGMGGEEDGHGAEGK 165 (347)
T ss_pred HHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeeccCccccccccccCcccccc
Confidence 458899999998876655533 34455788999999999 88887765431100 01
Q ss_pred ----CCCCCHHHHHHHHHHHHHCCCCEEEEcc--ccCcC----CHH---HHHHHHHHHHHHcCCceEEEeecCCc-----
Q psy15244 814 ----KKKYSLNYYEDLAKQLVESGAQVLCLKD--MAGLL----KPT---AAKLLIGSFREKYPNILIHVHTHDMA----- 875 (1427)
Q Consensus 814 ----~~~~~~~~~~~~a~~l~~~Gad~i~i~D--t~G~l----~P~---~~~~lv~~lr~~~p~ipi~~H~Hnd~----- 875 (1427)
...++++...++++ +.|+|.|.++= .=|.- +|. -=.++++.+++.+|++||.+|.=...
T Consensus 166 ~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 166 LSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred cchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHH
Confidence 11345555555443 46899766542 33333 242 34557788998987899999876644
Q ss_pred --------------chHHHHHHHHHHhcCCEEEecc
Q psy15244 876 --------------GTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 876 --------------GlA~An~laAi~AGad~VD~av 897 (1427)
|........|++.|+.-|+...
T Consensus 243 ~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~T 278 (347)
T PRK09196 243 DIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDT 278 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeCh
Confidence 5577888899999998887653
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.63 E-value=2.3 Score=51.21 Aligned_cols=132 Identities=23% Similarity=0.231 Sum_probs=90.7
Q ss_pred HHHHHhcCCCEEEEecc-CC--------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDP-LN--------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~-~n--------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
++.+.++|+|.|-+-.. .+ ..+.++++++.|+++|+ .+.++++.. .. ....+.+.+..+.+
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk---k~~V~~N~~---~~----~~~~~~~~~~l~~l 88 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK---KVYVAVNTL---LH----NDELETLERYLDRL 88 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC---eEEEEeccc---cc----cchhhHHHHHHHHH
Confidence 67788889888766644 11 34579999999999999 666665543 11 23445578999999
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE-EeccccCCCCCCCCc
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV-DVAADSMSGICSQPA 908 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V-D~av~GmG~~tgn~~ 908 (1427)
.++|+|.|.+.|.. +|..+++..|++|||+-+.-+.-.+- .+--.-+.|+..+ ..- --+
T Consensus 89 ~e~GvDaviv~Dpg----------~i~l~~e~~p~l~ih~S~q~~v~N~~-~~~f~~~~G~~rvVl~r---------Els 148 (347)
T COG0826 89 VELGVDAVIVADPG----------LIMLARERGPDLPIHVSTQANVTNAE-TAKFWKELGAKRVVLPR---------ELS 148 (347)
T ss_pred HHcCCCEEEEcCHH----------HHHHHHHhCCCCcEEEeeeEecCCHH-HHHHHHHcCCEEEEeCc---------cCC
Confidence 99999999999942 56778889999999997765544432 2222335676654 222 245
Q ss_pred HHHHHHHHHhCC
Q psy15244 909 MGTIVSCLENTD 920 (1427)
Q Consensus 909 lE~vv~~L~~~g 920 (1427)
++++....+...
T Consensus 149 ~~ei~~i~~~~~ 160 (347)
T COG0826 149 LEEIKEIKEQTP 160 (347)
T ss_pred HHHHHHHHHhCC
Confidence 677777777653
|
|
| >cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase | Back alignment and domain information |
|---|
Probab=91.59 E-value=23 Score=40.07 Aligned_cols=179 Identities=18% Similarity=0.129 Sum_probs=116.5
Q ss_pred HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEE
Q psy15244 720 WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 720 ~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v 799 (1427)
-+.++.|++..+ .++-.-+|..+-=|.....+....+.++.+.+.|++.+-|=... +.+...++.+++.+. .+
T Consensus 44 ~~~~~~lr~~~~-~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~---~~~~~~~~~~~~~~~---ki 116 (225)
T cd00502 44 AEQLSLLRELTP-LPIIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS---ALLEELINSRKKGNT---KI 116 (225)
T ss_pred HHHHHHHHHhCC-CCEEEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc---hHHHHHHHHHHhCCC---EE
Confidence 445667776654 67777788765555555566667778899999999888775544 566777777665555 33
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHc--CCceEEEeecCCcch
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY--PNILIHVHTHDMAGT 877 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~--p~ipi~~H~Hnd~Gl 877 (1427)
- ++|- ||.. + -+.+.+.++.+++.+.|+|++.|+=|+- .+.++.++....++.- ++.|+-.-+ .--+
T Consensus 117 I--~S~H-~f~~---t-p~~~~l~~~~~~~~~~gadivKla~~~~--~~~D~~~ll~~~~~~~~~~~~p~i~~~--MG~~ 185 (225)
T cd00502 117 I--GSYH-DFSG---T-PSDEELVSRLEKMAALGADIVKIAVMAN--SIEDNLRLLKFTRQVKNLYDIPLIAIN--MGEL 185 (225)
T ss_pred E--EEec-cCCC---C-cCHHHHHHHHHHHHHhCCCEEEEEecCC--CHHHHHHHHHHHHHHHhcCCCCEEEEE--cCCC
Confidence 2 3343 2211 1 1667888999999999999999986654 3667777776655442 245654433 2222
Q ss_pred HHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 878 GVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 878 A~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
|..+=+.+-.-|.-+.-+++.. ..-+||++++++...++
T Consensus 186 G~~SRil~~~~gs~~t~~~~~~-~sApGQ~~~~~l~~~~~ 224 (225)
T cd00502 186 GKLSRILSPVFGSPLTYASLPE-PSAPGQLSVEELKQALS 224 (225)
T ss_pred CchhhccccccCCcccccCCCC-CCCCCCcCHHHHHHHHh
Confidence 3344445555777776666654 56899999988876653
|
) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=4.3 Score=48.10 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC----CCCCCCHHHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP----NKKKYSLNYYEDLAK 827 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p----~~~~~~~~~~~~~a~ 827 (1427)
.+++.+|.++|.+.+-+=.|--+ ++.-++.++.|+..|. .||+-|-..+.--+. ...-++++...++++
T Consensus 98 ~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~Gv---sVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~ 174 (321)
T PRK07084 98 FELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDV---TVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK 174 (321)
T ss_pred HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeeecCccCCccCcccccCCHHHHHHHHH
Confidence 34689999999988765444433 3455678889999998 888777665311111 111346666666555
Q ss_pred HHHHCCCCEEEEc--cccCcC-------CHHHHHHHHHHHHHHcCCceEEEeecCC-------------------cchHH
Q psy15244 828 QLVESGAQVLCLK--DMAGLL-------KPTAAKLLIGSFREKYPNILIHVHTHDM-------------------AGTGV 879 (1427)
Q Consensus 828 ~l~~~Gad~i~i~--Dt~G~l-------~P~~~~~lv~~lr~~~p~ipi~~H~Hnd-------------------~GlA~ 879 (1427)
+ .|+|.+.++ -.=|.- .|.-=.++++.+++.++++||.+|.=.. .|..-
T Consensus 175 ~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~ 251 (321)
T PRK07084 175 K---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPE 251 (321)
T ss_pred H---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCH
Confidence 3 699977664 233333 3545567888999998779999987662 37888
Q ss_pred HHHHHHHHhcCCEEEec
Q psy15244 880 ATTLACVKAGADIVDVA 896 (1427)
Q Consensus 880 An~laAi~AGad~VD~a 896 (1427)
.....|++.|+.-|+..
T Consensus 252 e~~~kai~~GI~KINi~ 268 (321)
T PRK07084 252 EQLRKAAKSAVCKINID 268 (321)
T ss_pred HHHHHHHHcCCceeccc
Confidence 89999999999988664
|
|
| >PRK09439 PTS system glucose-specific transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.45 Score=51.21 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=52.6
Q ss_pred eEEEEEECCEEeEe----chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCE-E--ecC-CEEEEEEcCCceee
Q psy15244 1325 RTVFFLYNGQLRSL----DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQ-V--KKN-DVLIVMSVMKTETL 1396 (1427)
Q Consensus 1325 r~v~~elnG~~~~v----d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~-V--~~G-~~l~~ieamKme~~ 1396 (1427)
..++--++|+...+ |.--+......-.|-....+.|.||..|+|..+.-..=.- + ..| +.|+.|--.
T Consensus 21 ~~i~aP~~G~vi~L~~V~D~vFs~k~mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiD----- 95 (169)
T PRK09439 21 IEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGID----- 95 (169)
T ss_pred eEEEecCCeEEEEhHHCCChHhcccCccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeec-----
Confidence 35666788888766 2222221111111222245889999999998775321111 1 113 223222211
Q ss_pred eecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1397 i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+....|.==+.+|++||.|++||+|++++
T Consensus 96 -TV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 96 -TVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred -ccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 11122444567899999999999999875
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=8 Score=45.28 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=105.8
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEc-----c-ccCcCCHHHHHH---HHHHHHHHcCCceE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLK-----D-MAGLLKPTAAKL---LIGSFREKYPNILI 867 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~-----D-t~G~l~P~~~~~---lv~~lr~~~p~ipi 867 (1427)
.+.+.+..|-| +--|.++| +.+..++-++++.+.|||+|-|. - ...+-..++..+ .|++|++.+ ++||
T Consensus 16 ~imGIlNvTpD-SFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I 93 (282)
T PRK11613 16 HVMGILNVTPD-SFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI 93 (282)
T ss_pred eEEEEEcCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE
Confidence 45556666654 11245564 89999999999999999999886 1 112222245444 567777776 7899
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH-------hCCCCCCC-------Ch-hh-HH
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE-------NTDKRCGI-------DL-HD-VC 931 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~-------~~g~~tgi-------dl-~~-L~ 931 (1427)
.+-+-+ ...+.+|+++||++|+-- +|+. .+.+-++++-.. ..|..... |+ +. ..
T Consensus 94 SIDT~~-----~~va~~AL~~GadiINDI-~g~~----d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~ 163 (282)
T PRK11613 94 SVDTSK-----PEVIRESAKAGAHIINDI-RSLS----EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNR 163 (282)
T ss_pred EEECCC-----HHHHHHHHHcCCCEEEEC-CCCC----CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHH
Confidence 886655 455678999999998654 3331 344333332110 01111000 10 01 12
Q ss_pred HHHHHHHHHhCCCCCCCC----cccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCC
Q psy15244 932 DYSSYWRKVRELYAPAHN----LLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPG 997 (1427)
Q Consensus 932 ~l~~~v~~~~g~~~~~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pG 997 (1427)
.+.+.++.....-++.++ |-+| |.... .++-.+.+.-..+..|.+|-+.|.++.-+++.+-|
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiG---F~k~~-~~n~~ll~~l~~l~~lg~Pilvg~SRKsfig~~~~ 229 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFG---FGKNL-SHNYQLLARLAEFHHFNLPLLVGMSRKSMIGQLLN 229 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCC---cCCCH-HHHHHHHHHHHHHHhCCCCEEEEecccHHHHhhcC
Confidence 334555556666666665 4444 54433 44555555545566677677788887776665543
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.52 Score=53.31 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=76.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccC-ccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFS-AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s-~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
+.+|||+|+..-++.+++.+...+.. +.+.|-.+... +....+. ..+..+++.+.+.++.+++++|.++
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~-~~~ss~t~~g~~l~~~~~~---------~~~~G~l~~e~l~~~l~e~~i~llI 71 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVD-IILSSLTGYGAKLAEQIGP---------VRVGGFLGAEGLAAFLREEGIDLLI 71 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCcc-EEEEEcccccccchhccCC---------eeecCcCCHHHHHHHHHHcCCCEEE
Confidence 56899999998999999999999933 33444333221 2111221 1233478999999999999988776
Q ss_pred eCC----CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCC--CCCCccccCCCHHHHHHHHHhcC
Q psy15244 136 PGY----GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVP--IIPGTTEPVTDVDKVKEFCDEVE 208 (1427)
Q Consensus 136 pg~----gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVp--vp~~~~~~v~s~eea~~~a~~iG 208 (1427)
-.. --.|+| .+++|++.||+++- +++=+.. -..+. .+.|.+|+.+.+.+.+
T Consensus 72 DATHPyAa~iS~N--a~~aake~gipy~r------------------~eRP~~~~~gd~~~--~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 72 DATHPYAARISQN--AARAAKETGIPYLR------------------LERPPWAPNGDNWI--EVADIEEAAEAAKQLG 128 (257)
T ss_pred ECCChHHHHHHHH--HHHHHHHhCCcEEE------------------EECCccccCCCceE--EecCHHHHHHHHhccC
Confidence 431 122333 47788888888762 1111111 12333 5788888888877665
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.19 E-value=9.4 Score=44.25 Aligned_cols=124 Identities=16% Similarity=0.256 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcc-ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHh--cCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKD-MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA--GADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~D-t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~A--Gad~V 893 (1427)
-+.++.++.+++..+.|||.|-|.= +.+--.+.++..+|+.+++.+ ++||.+-+-+ ...+.+|+++ |+++|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~plsIDT~~-----~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DVPLCIDSPN-----PAAIEAGLKVAKGPPLI 95 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CCCEEEeCCC-----HHHHHHHHHhCCCCCEE
Confidence 5778999999999999999998862 222222456777888888877 8999886655 4556678887 99998
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCC--------CCC--Chh-hHHHHHHHHHHHhCCCCCCCCccc
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKR--------CGI--DLH-DVCDYSSYWRKVRELYAPAHNLLW 952 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~--------tgi--dl~-~L~~l~~~v~~~~g~~~~~~kpiv 952 (1427)
+..- |.. -..+.++..+++.|.. .|+ +.+ .+..+.+.++.....-+++.+-++
T Consensus 96 NsIs-~~~-----~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Iil 159 (261)
T PRK07535 96 NSVS-AEG-----EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYI 159 (261)
T ss_pred EeCC-CCC-----ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEE
Confidence 7543 221 1234555555554322 111 112 344555567767777777666333
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=6.8 Score=43.97 Aligned_cols=153 Identities=13% Similarity=0.070 Sum_probs=103.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++-+++++.|.+ .|++.||++ +-.++..+-++.+++..|+..+.. |. | - ..+
T Consensus 24 ~~~~~a~~i~~al~~--~Gi~~iEit----------l~~~~~~~~I~~l~~~~p~~~IGA---GT--V------l--~~~ 78 (212)
T PRK05718 24 NKLEDAVPLAKALVA--GGLPVLEVT----------LRTPAALEAIRLIAKEVPEALIGA---GT--V------L--NPE 78 (212)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEe----------cCCccHHHHHHHHHHHCCCCEEEE---ee--c------c--CHH
Confidence 456889999999998 799999996 224566777899999998754332 11 1 0 124
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.|.++|.+.+-.- .+++ ..++.+++.+. .. + | +..|+.. +.++.++|++.+
T Consensus 79 ~a~~a~~aGA~FivsP-~~~~-----~vi~~a~~~~i---~~-----i------P--G~~TptE----i~~a~~~Ga~~v 132 (212)
T PRK05718 79 QLAQAIEAGAQFIVSP-GLTP-----PLLKAAQEGPI---PL-----I------P--GVSTPSE----LMLGMELGLRTF 132 (212)
T ss_pred HHHHHHHcCCCEEECC-CCCH-----HHHHHHHHcCC---CE-----e------C--CCCCHHH----HHHHHHCCCCEE
Confidence 5889999999976433 2222 44566677777 11 1 1 1344443 556888999999
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhc
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AG 889 (1427)
.+-|. +.+- -...++.|+.-+|++++- -+-|....|.-.=+.+|
T Consensus 133 KlFPa-~~~g---g~~~lk~l~~p~p~~~~~----ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 133 KFFPA-EASG---GVKMLKALAGPFPDVRFC----PTGGISPANYRDYLALP 176 (212)
T ss_pred EEccc-hhcc---CHHHHHHHhccCCCCeEE----EeCCCCHHHHHHHHhCC
Confidence 99662 2221 134678888888887765 35677788888888889
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.98 E-value=12 Score=43.26 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCceeeeecccccccccCCCcchH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..+..+..|..+.+ .|.+.|+++++.+ .++.|+|+..+-+.+ .+++++.= .+..
T Consensus 23 d~~~i~~~A~~~~~--~GAdiIDVg~~~~--------~~eE~~r~~~~v~~l~~~~~~plsID----------T~~~--- 79 (261)
T PRK07535 23 DAAFIQKLALKQAE--AGADYLDVNAGTA--------VEEEPETMEWLVETVQEVVDVPLCID----------SPNP--- 79 (261)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEECCCCC--------chhHHHHHHHHHHHHHHhCCCCEEEe----------CCCH---
Confidence 44567777777766 7999999998743 356677765444333 14454321 1222
Q ss_pred HHHHHHHHhc--CCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy15244 756 GAFCRLASQA--GIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833 (1427)
Q Consensus 756 ~~~v~~a~~~--Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G 833 (1427)
+.+++|.+. |.+++.=....++ .....++.+++.|. -+. .++. .+-+.|....-..+++.++++.+.++|
T Consensus 80 -~v~eaaL~~~~G~~iINsIs~~~~--~~~~~~~l~~~~g~---~vv-~m~~-~~~g~P~t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 80 -AAIEAGLKVAKGPPLINSVSAEGE--KLEVVLPLVKKYNA---PVV-ALTM-DDTGIPKDAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred -HHHHHHHHhCCCCCEEEeCCCCCc--cCHHHHHHHHHhCC---CEE-EEec-CCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 346677777 9887654444331 13345566777776 221 1222 111233211122577888888899999
Q ss_pred CC--EEEEccc-cC-c-CCHHH---HHHHHHHHHHHcCCceEEEeecC-CcchH------HHHHHHHHHhcCCE
Q psy15244 834 AQ--VLCLKDM-AG-L-LKPTA---AKLLIGSFREKYPNILIHVHTHD-MAGTG------VATTLACVKAGADI 892 (1427)
Q Consensus 834 ad--~i~i~Dt-~G-~-l~P~~---~~~lv~~lr~~~p~ipi~~H~Hn-d~GlA------~An~laAi~AGad~ 892 (1427)
+. .|.| |. .| . ..+.+ .-+.++.+++.+|++|+-+=.+| .+|++ .+=...|+++|.|.
T Consensus 152 I~~~~Iil-DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~ 224 (261)
T PRK07535 152 IPPEDIYI-DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDS 224 (261)
T ss_pred CCHhHEEE-eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCE
Confidence 94 5544 43 22 1 12233 45566777778888887665555 34442 22233678888774
|
|
| >COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.9 Score=47.95 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=34.0
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCC-------ceeeeecCCCeEE-EEEEecCCCeeCCCCEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMK-------TETLIHASADGVV-KEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------me~~i~Ap~~G~V-~~i~v~~G~~V~~g~~L~~i 1425 (1427)
.|.-.+.+|++||+|++||+|+..--.. +.++|.-.-...+ .-+....+-.+.+|+.++.+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 3444467889999999999988764321 3333322222222 22233344477777777654
|
|
| >TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.23 Score=61.49 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
..|..-+..|++||+|++||+|+.-... +...+.||++|+|++|.-
T Consensus 36 ~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 36 FVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 3477778999999999999999977654 688999999999999953
|
This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=2.8 Score=49.08 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC------CCCCC-CHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP------NKKKY-SLNYYEDL 825 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p------~~~~~-~~~~~~~~ 825 (1427)
+.+++|.+.|++.|-+=.|-.+. +.-++.++.++..|. .+++.+-.-+.-.++ +.+.+ +++...++
T Consensus 88 e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv---~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f 164 (286)
T PRK06801 88 EAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGV---SVEAELGAVGGDEGGALYGEADSAKFTDPQLARDF 164 (286)
T ss_pred HHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC---eEEeecCcccCCCCCcccCCcccccCCCHHHHHHH
Confidence 56899999999998875444442 344566778888888 676665544310011 11123 34555544
Q ss_pred HHHHHHCCCCEEEEccccCcC------CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 826 AKQLVESGAQVLCLKDMAGLL------KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~Dt~G~l------~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ +.|+|.|.+ ..|.. .|.--.++++.+++.. ++|+.+|. .+|....+...++++|++-|+...
T Consensus 165 ~~---~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~-~~PLVlHG--GSgi~~e~~~~~i~~Gi~KINv~T 234 (286)
T PRK06801 165 VD---RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQT-GLPLVLHG--GSGISDADFRRAIELGIHKINFYT 234 (286)
T ss_pred HH---HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEC--CCCCCHHHHHHHHHcCCcEEEehh
Confidence 43 469999988 22211 2333456778888887 78987765 557888999999999999998754
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=90.87 E-value=16 Score=46.16 Aligned_cols=174 Identities=15% Similarity=0.083 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccCh---HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECP---WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p---~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
++.++-|..+.+ .|.+.|.+|++++- +.+ ...++.+++.. +.+++. |..--+
T Consensus 165 ~~i~~~A~~~~~--~GADIIDIG~~st~--------p~~~~v~~~V~~l~~~~-~~pISI--------------DT~~~~ 219 (499)
T TIGR00284 165 DGIEGLAARMER--DGADMVALGTGSFD--------DDPDVVKEKVKTALDAL-DSPVIA--------------DTPTLD 219 (499)
T ss_pred HHHHHHHHHHHH--CCCCEEEECCCcCC--------CcHHHHHHHHHHHHhhC-CCcEEE--------------eCCCHH
Confidence 667777777766 79999999988751 121 12234444332 233332 222234
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.+++|.++|.+.|. ++|. .++....+.+++.|. .+. .+. + . . ..+.+++.+.++.+.++|.+.|
T Consensus 220 v~eaAL~aGAdiIN---sVs~-~~~d~~~~l~a~~g~---~vV-lm~-~----~-~--~~~~~~l~~~ie~a~~~Gi~~I 283 (499)
T TIGR00284 220 ELYEALKAGASGVI---MPDV-ENAVELASEKKLPED---AFV-VVP-G----N-Q--PTNYEELAKAVKKLRTSGYSKV 283 (499)
T ss_pred HHHHHHHcCCCEEE---ECCc-cchhHHHHHHHHcCC---eEE-EEc-C----C-C--CchHHHHHHHHHHHHHCCCCcE
Confidence 57888899999877 3333 245556666777776 221 111 1 1 1 2334899999999999999753
Q ss_pred EEccccCcCCHHHHHHHHHHHH---HHcCCceEEEeec--------CCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFR---EKYPNILIHVHTH--------DMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr---~~~p~ipi~~H~H--------nd~GlA~An~laAi~AGad~VD~av 897 (1427)
|.|-.=...+....+-+..++ +.+ ++|+-+=.= |..|...+.+..|++.||++|=+.=
T Consensus 284 -IlDPglg~~~~~l~~sL~~l~~~r~~~-~~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvhd 352 (499)
T TIGR00284 284 -AADPSLSPPLLGLLESIIRFRRASRLL-NVPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVVE 352 (499)
T ss_pred -EEeCCCCcchHHHHHHHHHHHHHHHhc-CCcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEcC
Confidence 446421122344444444444 466 366522221 3445556666789999999987664
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=90.84 E-value=4.7 Score=47.03 Aligned_cols=130 Identities=14% Similarity=0.145 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~a 826 (1427)
++|.+|+++|.+.+-+=.|.-++ +.-++.++.++..|. .+|+-|-..+ +.++. .-++++...+++
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv---~VEaElG~i~--g~e~~~~~~~~~~T~pe~a~~Fv 157 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGV---SVEAELGRIG--GEEDGVVGDEGLLTDPEEAEEFV 157 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeeec--CccCCcccccccCCCHHHHHHHH
Confidence 56888999999887554444433 345678889999998 8888776664 12221 134566655555
Q ss_pred HHHHHCCCCEEEEcc--ccCcC---CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLKD--MAGLL---KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~D--t~G~l---~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .|+|.|.++= +=|.- .|.-=.++++.+++.+ ++|+.+|. .+|+.--....|++.|+.-|+...
T Consensus 158 ~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~-~vPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~T 227 (276)
T cd00947 158 EE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV-NVPLVLHG--GSGIPDEQIRKAIKLGVCKININT 227 (276)
T ss_pred HH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh-CCCEEEeC--CCCCCHHHHHHHHHcCCeEEEeCh
Confidence 44 5899776641 22222 5666677889999998 88987765 568888899999999999997754
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=90.74 E-value=13 Score=42.96 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=109.0
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC---CCceee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP---NIPFQM 737 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p---~~~~qm 737 (1427)
+|--+|=||.. .++.++.++.|..+.+ .|.+.|++++-+|-...-..-.+..|+|+..+-+.+. ++++..
T Consensus 8 ~tpdSF~dg~~-----~~~~~~~~~~a~~~~~--~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi 80 (257)
T TIGR01496 8 VTPDSFSDGGR-----FLSVDKAVAHAERMLE--EGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV 80 (257)
T ss_pred CCCCCCCCCCC-----CCCHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 44445666643 3677889999988877 7999999986444111111122335667764444332 344332
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC--
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK-- 815 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~-- 815 (1427)
|..--+.+++|.+.|++++.=....+ ....++.+++.|. .+.. +... +.|...
T Consensus 81 --------------DT~~~~vi~~al~~G~~iINsis~~~----~~~~~~l~~~~~~---~vV~--m~~~--g~p~~~~~ 135 (257)
T TIGR01496 81 --------------DTYRAEVARAALEAGADIINDVSGGQ----DPAMLEVAAEYGV---PLVL--MHMR--GTPRTMQE 135 (257)
T ss_pred --------------eCCCHHHHHHHHHcCCCEEEECCCCC----CchhHHHHHHcCC---cEEE--EeCC--CCCccccc
Confidence 11123347788889999876544443 3445566777776 2222 2221 233211
Q ss_pred --CC------CHHHHHHHHHHHHHCCCC--EEEEccc-cCcC-CHHHHHHHHHHHHHHc-CCceEEEe------------
Q psy15244 816 --KY------SLNYYEDLAKQLVESGAQ--VLCLKDM-AGLL-KPTAAKLLIGSFREKY-PNILIHVH------------ 870 (1427)
Q Consensus 816 --~~------~~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l-~P~~~~~lv~~lr~~~-p~ipi~~H------------ 870 (1427)
.| -.+++.+.++.+.++|+. .|.| |- .|.. ++.+..++++.++.-- +++|+-+=
T Consensus 136 ~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iil-DPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~ 214 (257)
T TIGR01496 136 NPHYEDVVEEVLRFLEARAEELVAAGVAAERIIL-DPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLG 214 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcC
Confidence 01 236677778888999984 4443 55 3332 3455556665554321 25664322
Q ss_pred --ecCCcchHHHHHHHHHHhcCCEE
Q psy15244 871 --THDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 871 --~Hnd~GlA~An~laAi~AGad~V 893 (1427)
..+..+..++.+..|++.||++|
T Consensus 215 ~~~~~r~~~t~~~~~~a~~~Ga~ii 239 (257)
T TIGR01496 215 TPPEERLEGTLAASAYAVQKGADIV 239 (257)
T ss_pred CChhhhhHHHHHHHHHHHHcCCCEE
Confidence 12333444555566778888876
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK11556 multidrug efflux system subunit MdtA; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.6 Score=57.73 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=48.9
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|....|+.|+.-..=+....+++. -+..|.++.+|+|.++++++|+.|++||+|++|+
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld 119 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEID 119 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEEC
Confidence 3566677777755555667788874 5788999999999999999999999999999985
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=90.57 E-value=8.3 Score=43.04 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChH-HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v 759 (1427)
++..++++.+.+ .|.+.|++||.-.. .++.. +-++.+|+. .+.|+-+. -|. . ..
T Consensus 11 e~~~~ia~~v~~--~gtDaI~VGGS~gv-------t~~~~~~~v~~ik~~-~~lPvilf-p~~-~-------~~------ 65 (205)
T TIGR01769 11 DEIEKIAKNAKD--AGTDAIMVGGSLGI-------VESNLDQTVKKIKKI-TNLPVILF-PGN-V-------NG------ 65 (205)
T ss_pred HHHHHHHHHHHh--cCCCEEEEcCcCCC-------CHHHHHHHHHHHHhh-cCCCEEEE-CCC-c-------cc------
Confidence 677889999988 89999999875211 22222 234566663 24454432 221 1 11
Q ss_pred HHHHhcCCCEEEEeccCC-----hH-HHHHHHHHHHHHhcCCCcEEEEEEEeecc-----CCCCC-CCCCCHHHHHHHHH
Q psy15244 760 RLASQAGIDIFRVFDPLN-----SV-PNLVKGMDAVQQVTGGSTIVEATICYAGD-----LTNPN-KKKYSLNYYEDLAK 827 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~n-----d~-~~~~~~i~~a~~~G~~~~~v~~~i~~t~d-----~~~p~-~~~~~~~~~~~~a~ 827 (1427)
+..+.|.+-+..-+| |+ ..-..++-.+++.|. ...-++++....+ ++.-. -...+++....++.
T Consensus 66 ---i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~-e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~ 141 (205)
T TIGR01769 66 ---LSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNL-EVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCL 141 (205)
T ss_pred ---cCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCC-cccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHH
Confidence 124566665555455 22 122233334477665 1223344333211 01100 11368888999999
Q ss_pred HHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHH---HHHHHHHHhcCCEE
Q psy15244 828 QLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGV---ATTLACVKAGADIV 893 (1427)
Q Consensus 828 ~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~---An~laAi~AGad~V 893 (1427)
.+..+|++.|+|.|..|...|-. .++++.+|+.. ++|+.+ |-|+ ..+-.++++|||.|
T Consensus 142 aa~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~-~~Pv~v------GGGIrs~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 142 AAKYFGMKWVYLEAGSGASYPVN-PETISLVKKAS-GIPLIV------GGGIRSPEIAYEIVLAGADAI 202 (205)
T ss_pred HHHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhh-CCCEEE------eCCCCCHHHHHHHHHcCCCEE
Confidence 99999999999999988864433 67888898887 777765 3333 34445567899876
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=90.50 E-value=32 Score=41.98 Aligned_cols=212 Identities=10% Similarity=0.064 Sum_probs=128.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChH----HHHHHHHHhCCCCceeeeecccccccccCCC
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPW----ERLAELRELIPNIPFQMILRGNSLVGYSNYS 751 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~----erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~ 751 (1427)
..++.+++++.+..+.+ .|+..+-+.||-+. ...++ +.++.+++..|.+.+.. .|
T Consensus 102 ~~ls~eEI~~~a~~~~~--~Gv~~i~lvgGe~p-------~~~~~e~l~~~i~~Ik~~~p~i~i~~------------g~ 160 (371)
T PRK09240 102 KTLDEEEIEREMAAIKK--LGFEHILLLTGEHE-------AKVGVDYIRRALPIAREYFSSVSIEV------------QP 160 (371)
T ss_pred ccCCHHHHHHHHHHHHh--CCCCEEEEeeCCCC-------CCCCHHHHHHHHHHHHHhCCCceecc------------CC
Confidence 45899999999999887 69998877555432 11233 33455666555543221 12
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
- -.+.++..+++|++.+.+..-.. +++....+++.++++|+. .+...+.+. -+
T Consensus 161 l--t~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~--~v~~g~i~G----lg---- 228 (371)
T PRK09240 161 L--SEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR--KIGLGALLG----LS---- 228 (371)
T ss_pred C--CHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC--eeceEEEec----CC----
Confidence 2 23447888899999988776553 334556788999999981 243333333 12
Q ss_pred CCHHHHHHHHHHHHHCCCC------EEE---EccccC------cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH-
Q psy15244 817 YSLNYYEDLAKQLVESGAQ------VLC---LKDMAG------LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA- 880 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad------~i~---i~Dt~G------~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A- 880 (1427)
-+.+..++++..+..++.+ .|. +....| .+.|.++.++|..+|-.+|+..|-+-+=-...+.-.
T Consensus 229 e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~ 308 (371)
T PRK09240 229 DWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNL 308 (371)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHH
Confidence 1455566666655555432 443 444444 267889999999999889988887766554333211
Q ss_pred --HHHHHHHhcCCEEEeccccCCCC-C--------CCCcHHHHHHHHHhCCCCC
Q psy15244 881 --TTLACVKAGADIVDVAADSMSGI-C--------SQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 881 --n~laAi~AGad~VD~av~GmG~~-t--------gn~~lE~vv~~L~~~g~~t 923 (1427)
.-..++.|| -.+.++|+... . ..-+.++++.+|+..|+++
T Consensus 309 ~~~~~~~~~ag---~~~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~ 359 (371)
T PRK09240 309 IPLGITKMSAG---SSTQPGGYADDHKELEQFEISDDRSVEEVAAALRAKGLQP 359 (371)
T ss_pred HhhcceeeccC---ccCCCCCcCCCCCCcCCccCCCCCCHHHHHHHHHHCCCee
Confidence 001233343 12344455432 1 1347788999999988875
|
|
| >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.1 Score=41.03 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=29.2
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
...|.||..|+|.+++++.|+.|..|+.|+.+
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45799999999999999999999999999864
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=90.39 E-value=4.5 Score=47.38 Aligned_cols=130 Identities=19% Similarity=0.197 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCEEEEeccCChHH-HH---HHHHHHHHHhcCCCcEEEEEEEeeccCCCCC------CCCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVP-NL---VKGMDAVQQVTGGSTIVEATICYAGDLTNPN------KKKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~-~~---~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~------~~~~~~~~~~~~a 826 (1427)
+.+++|.+.|++.+.+=.+-.+.+ |+ ++.++.++..|. .+++.+-..+ +.++ .+-++++...+.+
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv---~Ve~ElG~~g--g~ed~~~g~~~~~t~~eea~~f~ 162 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV---SVEAELGTLG--GIEDGVDEKEAELADPDEAEQFV 162 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEeeCCCc--CccccccccccccCCHHHHHHHH
Confidence 468899999999987766665554 44 566677788887 7776654322 1112 3345777665544
Q ss_pred HHHHHCCCCEEEEc-cc-cCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLK-DM-AGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~-Dt-~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
+ +.|+|.|.+. -| -|.. .|.--.++++.+++.+ ++||-+| ..+|+...|...++++|++-|+...
T Consensus 163 ~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~-~iPlv~h--GgSGi~~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 163 K---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT-NIPLVLH--GASGIPEEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred H---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh-CCCEEEE--CCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3 3599988853 11 1111 2333356778888888 7887555 5678889999999999999998764
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=4.5 Score=47.63 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=89.5
Q ss_pred HHHHHHHhcCCCEEEEeccCChHH----HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC----CCC-CCHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVP----NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN----KKK-YSLNYYEDLAK 827 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~----~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~----~~~-~~~~~~~~~a~ 827 (1427)
+.+++|.+.|++.+-+=.|--+.+ ..++.++.++..|. .+++.+-..+ +.++ .+. ++++...+++
T Consensus 90 ~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv---~vE~ElG~i~--g~ed~~~g~s~~t~peea~~f~- 163 (293)
T PRK07315 90 EDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGI---SVEAEVGTIG--GEEDGIIGKGELAPIEDAKAMV- 163 (293)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEecCccc--CcCccccCccCCCCHHHHHHHH-
Confidence 368899999999887765555443 44566777888887 6666554331 2132 123 6777665544
Q ss_pred HHHHCCCCEEEEc--cccCcC---CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 828 QLVESGAQVLCLK--DMAGLL---KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 828 ~l~~~Gad~i~i~--Dt~G~l---~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
+.|+|.|.+. =.=|.- +|.--.++++.+++.++++||-+|.- +|....|...++++|++-|+....
T Consensus 164 ---~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGG--SGi~~e~~~~~i~~Gi~KiNv~T~ 234 (293)
T PRK07315 164 ---ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGG--SGIPDDQIQEAIKLGVAKVNVNTE 234 (293)
T ss_pred ---HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECC--CCCCHHHHHHHHHcCCCEEEEccH
Confidence 5799998887 332322 24344567888888885699877764 588999999999999999877643
|
|
| >PRK09439 PTS system glucose-specific transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.9 Score=46.41 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=40.2
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEc--CC-----ceeeeecCCCeEEEEEEecCCCeeCCCC-EEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSV--MK-----TETLIHASADGVVKEIFVEVGGQVAQND-LVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~iea--mK-----me~~i~Ap~~G~V~~i~v~~G~~V~~g~-~L~~i~ 1426 (1427)
-+.|.=.+++|++||+|++||+|+...- .| +.+.|.-.-...+..+....|+ +.+|+ ++..++
T Consensus 98 ~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i~~~g~~~~~~vvitn~~~~~~~~~~~~~-v~~g~~~~~~i~ 168 (169)
T PRK09439 98 ELKGEGFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGS-VTAGETPVIRVK 168 (169)
T ss_pred ccCCCceEEEecCCCEEeCCCEEEEEcHHHHHhcCCCCeEEEEEeccccccceecccCc-eecCCeEEEEEe
Confidence 4778889999999999999999998753 22 3444433333333444444554 55565 455553
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=11 Score=45.04 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccc-cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDM-AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVD 894 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt-~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD 894 (1427)
.+++.+++.++.+.+.|++.|.|.+- ........+.++++.+++. +++.+++++ |.- -..+..-.+||++.+.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~----g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAITLSL----GERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceEEEec----CCCCHHHHHHHHHcCCCEEE
Confidence 47999999999999999999999732 2345668899999999987 477666654 222 2333445579999998
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccccc-chhhhhHHHHHHHHHHhhh
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC-GIDLHDVCDYSSYWRKVRE 973 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~-~~f~~~~~~~~~~~~~~~~ 973 (1427)
..+-+.. +++...+.. +.+.+...+..+.+.+. |+.+.. .-++|- +--.+....+...+.+...
T Consensus 145 ~glEs~~--------~~~~~~i~~-----~~s~~~~~~~i~~l~~~-Gi~v~~-~~iiGlpget~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 145 LRHETAD--------KELYAKLHP-----GMSFENRIACLKDLKEL-GYEVGS-GFMVGLPGQTLEDLADDILFLKELDL 209 (323)
T ss_pred eccccCC--------HHHHHHhCC-----CCCHHHHHHHHHHHHHc-CCeecc-eEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 7765542 223332221 23444455544444442 443211 224442 2111334444444444332
Q ss_pred hcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHC-CCCHHHHHHHHHHHHHHcCCC
Q psy15244 974 LYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF-GLDFEDVKRAYRTANFLLGDI 1031 (1427)
Q Consensus 974 ~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~-gl~~~ev~~~~~~v~~~lG~~ 1031 (1427)
.+-.|. .+..+||-. +. +. ....++..+.++..|..+.+.
T Consensus 210 ~~v~~~-----------~~~P~pgTp---l~----~~~~~~~~~~~~~~a~~R~~lp~~ 250 (323)
T PRK07094 210 DMIGIG-----------PFIPHPDTP---LK----DEKGGSLELTLKVLALLRLLLPDA 250 (323)
T ss_pred Ceeeee-----------ccccCCCCC---cc----cCCCCCHHHHHHHHHHHHHhCcCC
Confidence 221121 122345532 21 11 226788899999999999863
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=90.16 E-value=9.3 Score=44.99 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=98.7
Q ss_pred ccccCCCcchHHHHHHHHHhcCCCEEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 745 VGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 745 vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
-||.+-+. +...|++..+.|+.-++|=|... +.+.+..-|++++++.. .....|.--.|-.
T Consensus 86 tGyG~~~~--v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~---~~d~~I~ARTDa~- 159 (294)
T TIGR02319 86 AGYGNAMS--VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARE---DEDFTIIARTDAR- 159 (294)
T ss_pred CCCCCcHH--HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhcc---CCCeEEEEEeccc-
Confidence 36765544 46679999999999999999763 34555555666666543 1122222222211
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceE--EEeecCCcchHHHHHHHHHHhc
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILI--HVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi--~~H~Hnd~GlA~An~laAi~AG 889 (1427)
.....+..++-++...++|||.|.+. |..+++++..+++. + +.|+ .+....... .-+.-...+.|
T Consensus 160 ---~~~g~deaI~Ra~aY~eAGAD~ifi~---~~~~~~ei~~~~~~----~-~~P~~~nv~~~~~~p--~~s~~eL~~lG 226 (294)
T TIGR02319 160 ---ESFGLDEAIRRSREYVAAGADCIFLE---AMLDVEEMKRVRDE----I-DAPLLANMVEGGKTP--WLTTKELESIG 226 (294)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCEEEec---CCCCHHHHHHHHHh----c-CCCeeEEEEecCCCC--CCCHHHHHHcC
Confidence 23578889999999999999999985 67788877666554 4 3454 444332222 12344556679
Q ss_pred CCEEEeccccCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 890 ADIVDVAADSMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 890 ad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
++.|-.....+ ++...++...+..|+..|.
T Consensus 227 ~~~v~~~~~~~--~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 227 YNLAIYPLSGW--MAAASVLRKLFTELREAGT 256 (294)
T ss_pred CcEEEEcHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 99996555443 4455566777777765554
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=90.11 E-value=4.9 Score=46.97 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~~ 824 (1427)
+.|.+|.++|.+.+-+=.|--++ +.-++.++.|+..|. .||+-|-..+. .++. ..++++...+
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv---~VEaElG~vgg--~e~~~~~~~~~~~~T~peea~~ 160 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDC---SVEAELGRLGG--VEDDLSVDEEDALYTDPQEAKE 160 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEEecCC--ccCCCccccchhccCCHHHHHH
Confidence 56899999999887655444443 455788899999998 88888776642 2221 1345555555
Q ss_pred HHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 825 LAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .+.|+|.|.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|+.--....|+..|+.-|+...
T Consensus 161 Fv---~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~-~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 161 FV---EATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV-DVPLVLHG--ASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred HH---HHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh-CCCeEEec--CCCCCHHHHHHHHHcCCeEEEeCc
Confidence 54 367999777641 22221 3555677889999998 89987765 567788899999999999997653
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=90.10 E-value=2.4 Score=48.66 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=58.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEE-ecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGI-YSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav-~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+||||+|+..-++.+++.+.+.|+ +++- .++-.............+.++ .+.+.+.+.++++++++++|+-
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G-------~lg~~~~l~~~l~~~~i~~vID 72 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG-------RLGDEEGLAEFLRENGIDAVID 72 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC-------CCCCHHHHHHHHHhCCCcEEEE
Confidence 589999998889999999999998 3322 221111111011011123333 2338999999999999988764
Q ss_pred C-CCcccccH-HHHHHHHHCCCcee
Q psy15244 137 G-YGFLSERE-DFAKAVIGAGLEFI 159 (1427)
Q Consensus 137 g-~gflsE~~-~~a~~~e~~Gi~fi 159 (1427)
. .-|..+-. ...++|.+.||+++
T Consensus 73 ATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 73 ATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCCchHHHHHHHHHHHHhhcCcceE
Confidence 4 22322222 34678888888876
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=90.10 E-value=13 Score=42.30 Aligned_cols=121 Identities=20% Similarity=0.144 Sum_probs=81.1
Q ss_pred hcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 764 QAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 764 ~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
+.++|.|-|-.++- |.+.+...++.+++.+. -+.+-|. +. .+.....++++.
T Consensus 90 ~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~---PVsvKiR-------~~---~~~~~~~~~a~~ 156 (231)
T TIGR00736 90 AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNK---PIFVKIR-------GN---CIPLDELIDALN 156 (231)
T ss_pred hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCC---cEEEEeC-------CC---CCcchHHHHHHH
Confidence 45788888865542 56778888888886655 3333221 21 233457899999
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCC
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG 901 (1427)
++++|++.|.+-.+.. ..|....+.|+.+++.++++||---.-- .....+++.+++|||.|-++-.-|.
T Consensus 157 l~~aGad~i~Vd~~~~-g~~~a~~~~I~~i~~~~~~ipIIgNGgI---~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYP-GKPYADMDLLKILSEEFNDKIIIGNNSI---DDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHcCCCEEEEeeCCC-CCchhhHHHHHHHHHhcCCCcEEEECCc---CCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 9999999999954333 2355678899999999855886542211 2235566777789999987765553
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=90.04 E-value=13 Score=43.01 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v 759 (1427)
..+...+|+.+.+ .|...|-+-. ...|...+ ++.++.+++.+ +.|+-+ . .+.-+-.+ +
T Consensus 69 ~~~~~~~A~~~~~--~GA~aisvlt------e~~~f~g~-~~~l~~v~~~v-~iPvl~----k------dfi~~~~q--i 126 (260)
T PRK00278 69 DFDPVEIAKAYEA--GGAACLSVLT------DERFFQGS-LEYLRAARAAV-SLPVLR----K------DFIIDPYQ--I 126 (260)
T ss_pred CCCHHHHHHHHHh--CCCeEEEEec------ccccCCCC-HHHHHHHHHhc-CCCEEe----e------eecCCHHH--H
Confidence 3467889998888 6887775511 01111222 56778888764 455332 1 23223233 8
Q ss_pred HHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q psy15244 760 RLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL 839 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i 839 (1427)
+.+.++|.|.+.+-.+.-+.+.++..++.++..|+ .+.+. .++.+.+ +.+.++|++.|++
T Consensus 127 ~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl---~~lve-------------vh~~~E~----~~A~~~gadiIgi 186 (260)
T PRK00278 127 YEARAAGADAILLIVAALDDEQLKELLDYAHSLGL---DVLVE-------------VHDEEEL----ERALKLGAPLIGI 186 (260)
T ss_pred HHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCC---eEEEE-------------eCCHHHH----HHHHHcCCCEEEE
Confidence 99999999999998887556899999999999998 43322 2555544 4466789999998
Q ss_pred cc-ccCcCCHHHHHHHHHHHHHHcCC-ceEEEeecCCcch-HHHHHHHHHHhcCCEE
Q psy15244 840 KD-MAGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGT-GVATTLACVKAGADIV 893 (1427)
Q Consensus 840 ~D-t~G~l~P~~~~~lv~~lr~~~p~-ipi~~H~Hnd~Gl-A~An~laAi~AGad~V 893 (1427)
-- ......|. .+++..+.+.+|+ .++-.=. |. ...+.-.+.++|+|.|
T Consensus 187 n~rdl~~~~~d--~~~~~~l~~~~p~~~~vIaeg----GI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 187 NNRNLKTFEVD--LETTERLAPLIPSDRLVVSES----GIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred CCCCcccccCC--HHHHHHHHHhCCCCCEEEEEe----CCCCHHHHHHHHHcCCCEE
Confidence 53 01122222 3344555555553 3432211 22 3567778889999987
|
|
| >KOG3111|consensus | Back alignment and domain information |
|---|
Probab=89.98 E-value=5.1 Score=43.50 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
..+|+..+++|.+.|-+-.-. .+.....++.+|+.|. .+-.+| .| .++.+++..++.. +|
T Consensus 77 eq~V~~~a~agas~~tfH~E~--~q~~~~lv~~ir~~Gm---k~G~al-------kP---gT~Ve~~~~~~~~-----~D 136 (224)
T KOG3111|consen 77 EQWVDQMAKAGASLFTFHYEA--TQKPAELVEKIREKGM---KVGLAL-------KP---GTPVEDLEPLAEH-----VD 136 (224)
T ss_pred HHHHHHHHhcCcceEEEEEee--ccCHHHHHHHHHHcCC---eeeEEe-------CC---CCcHHHHHHhhcc-----cc
Confidence 446778888999987664433 2236677889999999 665542 56 4677777666542 23
Q ss_pred EEEE---ccccC-cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 836 VLCL---KDMAG-LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 836 ~i~i---~Dt~G-~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
.+-+ .=-.| ----+++-.-|+.||+++|.+.|++ |-|++..|.-+|++|||+.+=+...= -+.++-.+
T Consensus 137 ~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsav----f~a~d~~~ 208 (224)
T KOG3111|consen 137 MVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAV----FGAADPSD 208 (224)
T ss_pred EEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEEeccee----ecCCCHHH
Confidence 2211 11111 1112455666899999999888877 67999999999999999976333222 23345566
Q ss_pred HHHHHHh
Q psy15244 912 IVSCLEN 918 (1427)
Q Consensus 912 vv~~L~~ 918 (1427)
++..|+.
T Consensus 209 vi~~lr~ 215 (224)
T KOG3111|consen 209 VISLLRN 215 (224)
T ss_pred HHHHHHH
Confidence 7666654
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=89.98 E-value=12 Score=41.68 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=106.3
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.|.+ .|+..+|+.- -.++..+.++.+++..|+..+.. |. .. -.+
T Consensus 17 ~~~e~a~~~~~al~~--~Gi~~iEit~----------~t~~a~~~i~~l~~~~~~~~vGA---GT-Vl---------~~~ 71 (204)
T TIGR01182 17 DDVDDALPLAKALIE--GGLRVLEVTL----------RTPVALDAIRLLRKEVPDALIGA---GT-VL---------NPE 71 (204)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEeC----------CCccHHHHHHHHHHHCCCCEEEE---Ee-CC---------CHH
Confidence 367889999999998 8999999852 25677888999999888644332 11 11 123
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.++++|.+.+ ..+..+ ...++++++.|. ..- -| ..|+.. +..+.++|++.+
T Consensus 72 ~a~~a~~aGA~Fi--vsP~~~----~~v~~~~~~~~i---~~i-----PG--------~~TptE----i~~A~~~Ga~~v 125 (204)
T TIGR01182 72 QLRQAVDAGAQFI--VSPGLT----PELAKHAQDHGI---PII-----PG--------VATPSE----IMLALELGITAL 125 (204)
T ss_pred HHHHHHHcCCCEE--ECCCCC----HHHHHHHHHcCC---cEE-----CC--------CCCHHH----HHHHHHCCCCEE
Confidence 4888999999987 222222 256677888888 221 11 344443 335667999988
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
-+-= ++.+- -...+++|+.-+|++++- -+-|....|.-.=+.+|+..+
T Consensus 126 KlFP-A~~~G---G~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 126 KLFP-AEVSG---GVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred EECC-chhcC---CHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 7542 22221 135788899888887765 466888899999999998876
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=89.94 E-value=16 Score=40.54 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=88.0
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
+-++++++++.+.|++.+-+. .++++. +.+..+..+. .+...+ +.|... .+.+..+.-++++.++
T Consensus 17 ~~i~~~~~~a~~~~~~av~v~--p~~v~~---~~~~l~~~~~---~v~~~~------~fp~g~-~~~~~k~~eve~A~~~ 81 (203)
T cd00959 17 EDIRKLCDEAKEYGFAAVCVN--PCFVPL---AREALKGSGV---KVCTVI------GFPLGA-TTTEVKVAEAREAIAD 81 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEEc--HHHHHH---HHHHcCCCCc---EEEEEE------ecCCCC-CcHHHHHHHHHHHHHc
Confidence 346778999999898887655 233332 2233332333 333332 234443 5666666668899999
Q ss_pred CCCEEEEccccCcCCH---HHHHHHHHHHHHHcCCceEEEeecCCcc----hHHHHHHHHHHhcCCEEEeccccCCCCCC
Q psy15244 833 GAQVLCLKDMAGLLKP---TAAKLLIGSFREKYPNILIHVHTHDMAG----TGVATTLACVKAGADIVDVAADSMSGICS 905 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~P---~~~~~lv~~lr~~~p~ipi~~H~Hnd~G----lA~An~laAi~AGad~VD~av~GmG~~tg 905 (1427)
|||.|.+.=-.|.+.. ..+.+.+..+++...++|+-+ ...+.. .=...+..|+++|||+|-++ .|.+ ++
T Consensus 82 GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~--~~ 157 (203)
T cd00959 82 GADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-ILETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG--PG 157 (203)
T ss_pred CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-EEecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC--CC
Confidence 9998887666665432 557778888888765566422 122222 22234567899999999998 4443 34
Q ss_pred CCcHHHHHHHHH
Q psy15244 906 QPAMGTIVSCLE 917 (1427)
Q Consensus 906 n~~lE~vv~~L~ 917 (1427)
.+.++.+-.+.+
T Consensus 158 ~at~~~v~~~~~ 169 (203)
T cd00959 158 GATVEDVKLMKE 169 (203)
T ss_pred CCCHHHHHHHHH
Confidence 466665444433
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.22 Score=58.37 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
.|.++..|.|.+++|++||.|++||+|+.|..
T Consensus 3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp EE--SS-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred EEeCCCCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence 46778888888888888888888888888864
|
; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=5.6 Score=47.68 Aligned_cols=134 Identities=20% Similarity=0.260 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCC-------C----C--
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLT-------N----P-- 812 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~-------~----p-- 812 (1427)
+.|.+|++.|.+.+-+=-|.- +++.-++.+++|+..|. .||+-|-..+... + .
T Consensus 89 e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~Gv---sVEaELG~igg~e~~~~g~ed~~~~~~~ 165 (347)
T PRK13399 89 ATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGV---SVEGELGCLGSLETGEAGEEDGVGAEGK 165 (347)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCC---eEEEEeeeccCcccccccccCCcccccc
Confidence 468999999998876655533 23455678899999999 8888775443100 1 0
Q ss_pred ---CCCCCCHHHHHHHHHHHHHCCCCEEEEc--cccCcC----CHH---HHHHHHHHHHHHcCCceEEEeecCCc-----
Q psy15244 813 ---NKKKYSLNYYEDLAKQLVESGAQVLCLK--DMAGLL----KPT---AAKLLIGSFREKYPNILIHVHTHDMA----- 875 (1427)
Q Consensus 813 ---~~~~~~~~~~~~~a~~l~~~Gad~i~i~--Dt~G~l----~P~---~~~~lv~~lr~~~p~ipi~~H~Hnd~----- 875 (1427)
+..-++++...+++++ .|+|.|.++ =.=|.- .|. --.++++.+++.++++||.+|.=...
T Consensus 166 ~~~~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~ 242 (347)
T PRK13399 166 LSHDQMLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQ 242 (347)
T ss_pred ccccccCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHH
Confidence 1113456666655544 689976654 233443 243 34567888999987799988875532
Q ss_pred --------------chHHHHHHHHHHhcCCEEEec
Q psy15244 876 --------------GTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 876 --------------GlA~An~laAi~AGad~VD~a 896 (1427)
|........|++.|+.-|+..
T Consensus 243 ~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~ 277 (347)
T PRK13399 243 EIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNID 277 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeC
Confidence 344677788888888887664
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=89.79 E-value=14 Score=42.28 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChH-------HH--------------HHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSV-------PN--------------LVKGMDAVQQVTGGSTIVEATICYAGDLTNPN 813 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~-------~~--------------~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~ 813 (1427)
..++++...++|+|.+.+=.+.||. ++ .-..++.+++... .-+ ..+.|. +|.
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~--~pv-~lm~y~----n~~ 88 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNT--IPI-VLMGYY----NPI 88 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCC--CCE-EEEEec----CHH
Confidence 5567888888999999999777752 32 1223344443321 011 122221 221
Q ss_pred CCCCCHHH-HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 814 KKKYSLNY-YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 814 ~~~~~~~~-~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
..| +.++++.+.++|++.+.+.| +.+++..++++.+|+. ++...+=+=.+.-......+... ..+.
T Consensus 89 -----~~~G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~--g~~~i~~i~P~T~~~~i~~i~~~--~~~~ 155 (242)
T cd04724 89 -----LQYGLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEY--GLDLIFLVAPTTPDERIKKIAEL--ASGF 155 (242)
T ss_pred -----HHhCHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhh--CCCC
Confidence 122 34567788899999999999 4678888999999876 45444433333333322333322 3443
Q ss_pred EE-eccc-cCCCCCC-CCcHHHHHHHHHhC
Q psy15244 893 VD-VAAD-SMSGICS-QPAMGTIVSCLENT 919 (1427)
Q Consensus 893 VD-~av~-GmG~~tg-n~~lE~vv~~L~~~ 919 (1427)
|- .|++ +.|+.++ .+.+.+.+..++..
T Consensus 156 vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 156 IYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 32 2433 3444442 45666777777754
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.74 Score=48.56 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=59.0
Q ss_pred ceEEEEEECCEEeEe----chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecC---CCEEecCCEEEEEEcCCceee
Q psy15244 1324 ERTVFFLYNGQLRSL----DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKV---GQQVKKNDVLIVMSVMKTETL 1396 (1427)
Q Consensus 1324 ~r~v~~elnG~~~~v----d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~---Gd~V~~G~~l~~ieamKme~~ 1396 (1427)
...++--++|+...+ |..-+......-.|-....+.|.||..|+|..++-.. |=.-..|-.|++==-|.
T Consensus 5 ~~~i~sP~~G~vv~Ls~VpD~vFs~k~mGdGiAI~P~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiD---- 80 (156)
T COG2190 5 KEEIYSPLSGEVVPLSDVPDPVFSEKMVGDGVAIKPSEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGID---- 80 (156)
T ss_pred cEEEEccCCceEEEchhCCchHhhcccccCcEEEecCCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEecee----
Confidence 345667788988776 3322222222222334456999999999998775432 22223344444311111
Q ss_pred eecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1397 i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+...+|.-=+.+|++||.|++||+|++++
T Consensus 81 -TV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 81 -TVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred -eEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 11234666678999999999999999875
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=89.74 E-value=9.5 Score=44.73 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCccEEeccCCCchhhhhhccc--cCh----HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCC
Q psy15244 695 NNLYSLEMWGGAVSHTCLKFLK--ECP----WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGID 768 (1427)
Q Consensus 695 ~G~~~iE~~ggatfd~~~rfl~--e~p----~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid 768 (1427)
+|+..+=+.|.+.-. .+.+-. --+ +++++.+.... ++|+..=+ --||.+ |.|+. ..|++..++|+.
T Consensus 32 aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~-~iPviaD~----d~GyG~-~~~v~-~tv~~~~~aG~a 103 (285)
T TIGR02317 32 AGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVT-DLPLLVDA----DTGFGE-AFNVA-RTVREMEDAGAA 103 (285)
T ss_pred cCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC----CCCCCC-HHHHH-HHHHHHHHcCCe
Confidence 688888665433211 222211 012 33334444333 34543322 348888 88864 588999999999
Q ss_pred EEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 769 IFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 769 ~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
.++|=|... +.+.+..-|++++++... ....|.--.| -. .....+..++-++...++|||
T Consensus 104 gi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~---~d~~IiARTD---a~-~~~g~deAI~Ra~ay~~AGAD 176 (285)
T TIGR02317 104 AVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRD---EDFVIIARTD---AR-AVEGLDAAIERAKAYVEAGAD 176 (285)
T ss_pred EEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccC---CCEEEEEEcC---cc-cccCHHHHHHHHHHHHHcCCC
Confidence 999999753 445666666777766541 1122222212 11 234688888999999999999
Q ss_pred EEEEccccCcCCHHHHHHHHHHHHHHcCCceE--EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHH
Q psy15244 836 VLCLKDMAGLLKPTAAKLLIGSFREKYPNILI--HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIV 913 (1427)
Q Consensus 836 ~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi--~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv 913 (1427)
.|.+. |..+++++..+.+ ++ ++|+ -+..+...++ -+.-..-+.|++.|-.....+ ++.+.++...+
T Consensus 177 ~vfi~---g~~~~e~i~~~~~----~i-~~Pl~~n~~~~~~~p~--~s~~eL~~lGv~~v~~~~~~~--~aa~~a~~~~~ 244 (285)
T TIGR02317 177 MIFPE---ALTSLEEFRQFAK----AV-KVPLLANMTEFGKTPL--FTADELREAGYKMVIYPVTAF--RAMNKAAEAVY 244 (285)
T ss_pred EEEeC---CCCCHHHHHHHHH----hc-CCCEEEEeccCCCCCC--CCHHHHHHcCCcEEEEchHHH--HHHHHHHHHHH
Confidence 99984 5666776665554 44 3566 3333332221 134455678999995554333 44455666777
Q ss_pred HHHHhCCC
Q psy15244 914 SCLENTDK 921 (1427)
Q Consensus 914 ~~L~~~g~ 921 (1427)
..|+..|.
T Consensus 245 ~~l~~~g~ 252 (285)
T TIGR02317 245 NEIKEHGT 252 (285)
T ss_pred HHHHHcCC
Confidence 77766654
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=18 Score=41.97 Aligned_cols=202 Identities=15% Similarity=0.123 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC-CCCceeeeecccccccccCCCc-chHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI-PNIPFQMILRGNSLVGYSNYSP-AEVG 756 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~-p~~~~qml~Rg~n~vgy~~~~~-nvv~ 756 (1427)
+.+|..++++...+ .|++++=+-.|. ++..++.. .++++.+-+- ..++|.+.+. ...-
T Consensus 37 ~~~d~~~~~~~a~~--~~~~av~v~~~~----------------~~~~~~~~~~~~~l~~~i~--~~~~~~~~~~~~~~~ 96 (267)
T PRK07226 37 GLVDIRDTVNKVAE--GGADAVLMHKGL----------------ARHGHRGYGRDVGLIVHLS--ASTSLSPDPNDKVLV 96 (267)
T ss_pred CcCCHHHHHHHHHh--cCCCEEEeCHhH----------------HhhhccccCCCCcEEEEEc--CCCCCCCCCCcceee
Confidence 55677777777766 588888664321 11112222 2344333222 2334433222 3344
Q ss_pred HHHHHHHhcCCCEEEEeccCCh------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~ 830 (1427)
..++.|++.|+|.+-+.....+ .+.+....+.+++.|. .+-+ +.|.. +-.-.+.++.+.+...++.+.
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~---pl~v-i~~~~--g~~~e~~~~~~~i~~a~~~a~ 170 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGM---PLLA-MMYPR--GPGIKNEYDPEVVAHAARVAA 170 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCC---cEEE-EEecC--CCccCCCccHHHHHHHHHHHH
Confidence 4588999999997666544432 2355566667777787 3322 33331 110112367788888889999
Q ss_pred HCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEE---eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCC
Q psy15244 831 ESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHV---HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQP 907 (1427)
Q Consensus 831 ~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~---H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~ 907 (1427)
++|||.|-.. ..| .+ ++++.+.+.. .+||-. -..+|.-.++.+.-.++++||+.+....+=+ ..+
T Consensus 171 e~GAD~vKt~-~~~--~~----~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~----~~~ 238 (267)
T PRK07226 171 ELGADIVKTN-YTG--DP----ESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVF----QHE 238 (267)
T ss_pred HHCCCEEeeC-CCC--CH----HHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhh----cCC
Confidence 9999998654 111 22 3444444433 456422 2223555678888899999999553332222 235
Q ss_pred cHHHHHHHHHh
Q psy15244 908 AMGTIVSCLEN 918 (1427)
Q Consensus 908 ~lE~vv~~L~~ 918 (1427)
+.++.+..|..
T Consensus 239 ~p~~~~~~l~~ 249 (267)
T PRK07226 239 DPEAITRAISA 249 (267)
T ss_pred CHHHHHHHHHH
Confidence 55666666654
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=89.62 E-value=13 Score=41.79 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeec-ccccccccCCCcchHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILR-GNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~R-g~n~vgy~~~~~nvv~~ 757 (1427)
...+..++++.+.+ .|+..+++++ .+.++.+++. .++++-...| +-. ++..+.+. -..
T Consensus 25 ~~~~i~~~a~~~~~--~G~~~~~~~~---------------~~~~~~i~~~-~~iPil~~~~~~~~--~~~~~ig~-~~~ 83 (219)
T cd04729 25 SPEIMAAMALAAVQ--GGAVGIRANG---------------VEDIRAIRAR-VDLPIIGLIKRDYP--DSEVYITP-TIE 83 (219)
T ss_pred cHHHHHHHHHHHHH--CCCeEEEcCC---------------HHHHHHHHHh-CCCCEEEEEecCCC--CCCceeCC-CHH
Confidence 44678899999888 7998888532 2456666664 4666532222 210 00001111 123
Q ss_pred HHHHHHhcCCCEEEEeccCC---hHHHHHHHHHHHHHhc-CCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy15244 758 FCRLASQAGIDIFRVFDPLN---SVPNLVKGMDAVQQVT-GGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~n---d~~~~~~~i~~a~~~G-~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G 833 (1427)
+++.+.++|+|.+-+-.+.. +-..+...++.+++.| . .+.+ . .++++. ++.+.++|
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~---~iiv----~---------v~t~~e----a~~a~~~G 143 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNC---LLMA----D---------ISTLEE----ALNAAKLG 143 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCC---eEEE----E---------CCCHHH----HHHHHHcC
Confidence 68999999999766543332 1126677788888887 4 2221 1 234443 46777899
Q ss_pred CCEEEEc--cccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEe
Q psy15244 834 AQVLCLK--DMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDV 895 (1427)
Q Consensus 834 ad~i~i~--Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~ 895 (1427)
+|.|.+. +..+.. ......++++.+++.+ ++|+-. ..|.. ..++..++++|||.|=.
T Consensus 144 ~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia----~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 144 FDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIA----EGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred CCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEE----eCCCCCHHHHHHHHHCCCCEEEE
Confidence 9988542 222211 1112346888898887 788765 45663 47888889999988643
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=7.8 Score=45.41 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCEEEEeccCChHH----HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC----CCCCCCHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVP----NLVKGMDAVQQVTGGSTIVEATICYAGDLTNP----NKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~----~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p----~~~~~~~~~~~~~a~~ 828 (1427)
+++++|++.|++.|.+=.+-.+.+ ..++.++.+++.|. .+++-+-.-|.-.++ ..+-++++...+.++
T Consensus 88 e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv---~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~- 163 (281)
T PRK06806 88 EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGA---TVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAE- 163 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEeeeECCccCCcccccceeCCHHHHHHHHH-
Confidence 468999999999988877766543 34567778888888 666655544311111 122456666555443
Q ss_pred HHHCCCCEEEE--ccccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 829 LVESGAQVLCL--KDMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 829 l~~~Gad~i~i--~Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
+.|+|.|.+ -=.-|.- .|.--.++++.+++.. ++|+-+|. .+|....|...++++|++-|++...
T Consensus 164 --~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~-~iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 164 --ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV-HIPLVLHG--GSGISPEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred --hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc-CCCEEEEC--CCCCCHHHHHHHHHcCCcEEEEhHH
Confidence 469999888 3344422 2334456788888887 78977665 5688999999999999999887643
|
|
| >KOG2799|consensus | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.1 Score=52.39 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC-cEEEeecCCCCCc-----------CeEEecCHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF-PVILKAAFGGGGR-----------GMRMVANKDAIEENFK 238 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGGr-----------GV~iV~s~eeL~~a~~ 238 (1427)
.-+...+++++.|+.+|+++ +..|++|+.+.++++|- -+|||+-.-.||| ||++|.+++|.+..-.
T Consensus 26 hey~~~~ll~~~Gv~vp~g~--vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~ 103 (434)
T KOG2799|consen 26 HEYRSAALLRKYGINVPLGY--VAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVAS 103 (434)
T ss_pred HHHHHHHHHHHcCCCCCCCc--ccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHHH
Confidence 34555789999999999998 78999999999999974 3999998666665 6999999999776655
Q ss_pred HH
Q psy15244 239 RA 240 (1427)
Q Consensus 239 ~a 240 (1427)
++
T Consensus 104 qm 105 (434)
T KOG2799|consen 104 QM 105 (434)
T ss_pred Hh
Confidence 44
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=89.46 E-value=4.1 Score=51.32 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
++.+.+.++.+.+.|||+|-|.=-.+.-.|..+...|+.+++.+ ++||.+-+.| ...+.+|+++||++|+ +++
T Consensus 164 l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~pISIDT~~-----~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 164 EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSPVIADTPT-----LDELYEALKAGASGVI-MPD 236 (499)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCcEEEeCCC-----HHHHHHHHHcCCCEEE-ECC
Confidence 48899999999999999999974444344567899999999887 8999998887 4667799999999998 444
Q ss_pred c
Q psy15244 899 S 899 (1427)
Q Consensus 899 G 899 (1427)
|
T Consensus 237 ~ 237 (499)
T TIGR00284 237 V 237 (499)
T ss_pred c
Confidence 4
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=89.44 E-value=20 Score=42.88 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=92.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
.|+.++.+++ +++ .|+..|-+.||-- +++++-++-++.+++.- ..+.+..-| .- ..
T Consensus 58 ~ls~ee~~~~---i~e--~g~~~V~i~GGEP------LL~pdl~eiv~~~~~~g--~~v~l~TNG---~l--------l~ 113 (318)
T TIGR03470 58 RLSVEECLRA---VDE--CGAPVVSIPGGEP------LLHPEIDEIVRGLVARK--KFVYLCTNA---LL--------LE 113 (318)
T ss_pred CCCHHHHHHH---HHH--cCCCEEEEeCccc------cccccHHHHHHHHHHcC--CeEEEecCc---ee--------hH
Confidence 4777776654 455 5888888888754 56666566666665532 223332222 11 12
Q ss_pred HHHHHHHhcCCCEEEEe-ccCCh-----------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVF-DPLNS-----------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif-~~~nd-----------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
+.++...++|...|.|. |+..+ .+...++|+.++++|. .+....... . ..+.+.+.+
T Consensus 114 ~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~---~v~v~~tv~----~----~~n~~ei~~ 182 (318)
T TIGR03470 114 KKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGF---RVTTNTTLF----N----DTDPEEVAE 182 (318)
T ss_pred HHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCC---cEEEEEEEe----C----CCCHHHHHH
Confidence 23455566787766663 33222 3456678888888888 444332221 1 478899999
Q ss_pred HHHHHHHCCCCEEEEc---------cccCcCCHHHHHHHHHHHHHH
Q psy15244 825 LAKQLVESGAQVLCLK---------DMAGLLKPTAAKLLIGSFREK 861 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~---------Dt~G~l~P~~~~~lv~~lr~~ 861 (1427)
+++.+.+.|++.+.+. |..-.+.+.+..+++..+.+.
T Consensus 183 ~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 183 FFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred HHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHHhh
Confidence 9999999999988773 222246677777777776643
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.33 Score=60.20 Aligned_cols=44 Identities=30% Similarity=0.256 Sum_probs=37.6
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~ 1409 (1427)
.|..-+..|++||+|++||+|+.-... +...+.||++|+|++|.
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 355668999999999999999965544 57899999999999995
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.8 Score=48.41 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=58.8
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCC
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSG 902 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~ 902 (1427)
..=++.|+++|+|.| |-+-.++| +.+++..+|+.| ++|+-.-|-| +..++.|+++||++|-++..|
T Consensus 79 ~~Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~--- 144 (287)
T TIGR00343 79 FVEAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA--- 144 (287)
T ss_pred HHHHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC---
Confidence 344889999999999 88889999 689999999999 8998776665 667799999999999999764
Q ss_pred CCCC
Q psy15244 903 ICSQ 906 (1427)
Q Consensus 903 ~tgn 906 (1427)
+|||
T Consensus 145 gTg~ 148 (287)
T TIGR00343 145 GTGN 148 (287)
T ss_pred CCcc
Confidence 4665
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=9.3 Score=44.75 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCCEEEEeccCChH-HHH---HHHHHHHHHhcCCCcEEEEEEEeeccCCCCC-----CC---CCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV-PNL---VKGMDAVQQVTGGSTIVEATICYAGDLTNPN-----KK---KYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~-~~~---~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~-----~~---~~~~~~~~~ 824 (1427)
+.++.|.+.|.+.|-+=.|--+. +|+ ++.++.++..|. .+++-+-..+ +..+ .+ .++++...+
T Consensus 82 e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv---~vE~ElG~vg--~~e~~~~~~~~~~~~t~peea~~ 156 (283)
T PRK08185 82 EDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGV---SVEGELGTIG--NTGTSIEGGVSEIIYTDPEQAED 156 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEeecc--CcccccccccccccCCCHHHHHH
Confidence 45889999999886554444333 344 566677788888 7777664432 1111 01 234544433
Q ss_pred HHHHHHHCCCCEEEEc-cccCcC-----CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 825 LAKQLVESGAQVLCLK-DMAGLL-----KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~-Dt~G~l-----~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .+.|+|.+.++ -|++.. +|.--.++++.+++.+ ++||-+|.-. |..-.....|+..|+.-|+...
T Consensus 157 f~---~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~-~iPLVlHGgs--g~~~e~~~~ai~~GI~KiNi~T 229 (283)
T PRK08185 157 FV---SRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV-DIPLVLHGGS--ANPDAEIAESVQLGVGKINISS 229 (283)
T ss_pred HH---HhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh-CCCEEEECCC--CCCHHHHHHHHHCCCeEEEeCh
Confidence 33 33499988871 122222 3544577888999887 8999888765 5557888999999999997653
|
|
| >PRK11578 macrolide transporter subunit MacA; Provisional | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.87 Score=55.35 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=43.4
Q ss_pred EEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+.-+.|+.|+....=..-..+++- -+..|.|+.+|.|.++++++||.|++||+|+.|+
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld 93 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID 93 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEEC
Confidence 4555566666543322233445544 3568999999999999999999999999999986
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=89.10 E-value=36 Score=37.50 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=102.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccC-CCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWG-GAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~g-gatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+...+..+.++.+.+ .|++.|++.- ...|.-. ..-..+.++.+++.. +.++...+-. .| ..
T Consensus 9 ~d~~~~~~~~~~~~~--~G~~~i~l~~~d~~~~~~----~~~~~~~~~~i~~~~-~~~~~v~l~~----------~d-~~ 70 (211)
T cd00429 9 ADFANLGEELKRLEE--AGADWIHIDVMDGHFVPN----LTFGPPVVKALRKHT-DLPLDVHLMV----------EN-PE 70 (211)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEecccCCCCCc----cccCHHHHHHHHhhC-CCcEEEEeee----------CC-HH
Confidence 555566777777777 7999998731 0011000 111236777888765 3443322211 12 24
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
.|++.+.++|+|.+.+-+..+ +.+...++..++.|. .+...+ .+. .+.+.+.+ +.+ ++|.
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~--~~~~~~~~~~~~~~~---~~g~~~-------~~~---~~~~~~~~----~~~-~~d~ 130 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEAT--DHLHRTIQLIKELGM---KAGVAL-------NPG---TPVEVLEP----YLD-EVDL 130 (211)
T ss_pred HHHHHHHHcCCCEEEECccch--hhHHHHHHHHHHCCC---eEEEEe-------cCC---CCHHHHHH----HHh-hCCE
Confidence 579999999999987776554 456677888888887 443321 121 22333333 222 2676
Q ss_pred EEEc----cccCcCCHHHHHHHHHHHHHHcC----CceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 837 LCLK----DMAGLLKPTAAKLLIGSFREKYP----NILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 837 i~i~----Dt~G~l~P~~~~~lv~~lr~~~p----~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
+.+- =+.|...+....+.++.+|+..+ ++|+.+= .|....|.-.++++|+|.|
T Consensus 131 i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~----GGI~~env~~~~~~gad~i 191 (211)
T cd00429 131 VLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD----GGINLETIPLLAEAGADVL 191 (211)
T ss_pred EEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEE
Confidence 6441 12333344566677777877663 4676553 3777888889999999987
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=88.99 E-value=23 Score=41.86 Aligned_cols=128 Identities=20% Similarity=0.153 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcC-CCEEEEecc-----------CChHHHHHHHHHHHHHhc-CCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 755 VGAFCRLASQAG-IDIFRVFDP-----------LNSVPNLVKGMDAVQQVT-GGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 755 v~~~v~~a~~~G-id~~rif~~-----------~nd~~~~~~~i~~a~~~G-~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
..+..+++.+.| +|.|-|-.+ ..+.+.+.+.++.+++.- . -+.+-+ +| +.+.
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~---pv~vKl-------~~-----~~~~ 170 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV---PVIVKL-------TP-----NVTD 170 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC---CEEEEc-------CC-----Cchh
Confidence 344566666788 999987332 224567778888888763 3 121111 22 3346
Q ss_pred HHHHHHHHHHCCCCEEEEcccc------------------CcCCHH----HHHHHHHHHHHHcCCceEEEeecCCcchHH
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMA------------------GLLKPT----AAKLLIGSFREKYPNILIHVHTHDMAGTGV 879 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~------------------G~l~P~----~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~ 879 (1427)
+.++++.++++|+|.|.+-.|. |.+.+. ...+++..+++.+ ++||-.=.--+.+
T Consensus 171 ~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~--- 246 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSA--- 246 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCH---
Confidence 7889999999999988764432 112111 2467888899887 7888764444333
Q ss_pred HHHHHHHHhcCCEEEeccccCC
Q psy15244 880 ATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 880 An~laAi~AGad~VD~av~GmG 901 (1427)
..+.+++.+|||.|..+-.-+.
T Consensus 247 ~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 247 EDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred HHHHHHHHcCCCceeEcHHHhc
Confidence 4556667789999887765554
|
|
| >PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.93 E-value=1 Score=55.30 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|+..+|.++.|+.+ .. |..-+.+|-+ .....|.||..|+|.+++|
T Consensus 16 eg~i~~w~v~~Gd~V-----------~~-Gd~l~~vEtd----------------------K~~~ei~a~~~G~v~~i~v 61 (407)
T PRK05704 16 EATIATWHKKPGDAV-----------KR-DEVLVEIETD----------------------KVVLEVPAPAAGVLSEILA 61 (407)
T ss_pred eEEEEEEEeCCcCEe-----------CC-CCEEEEEEec----------------------CceeEEecCCCEEEEEEEe
Confidence 578889999999886 22 4333333322 1346789999999999999
Q ss_pred cCCCEEecCCEEEEEEcCC
Q psy15244 1374 KVGQQVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieamK 1392 (1427)
++||.|+.|++|+.|+...
T Consensus 62 ~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 62 EEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCCEeCCCCEEEEEecCC
Confidence 9999999999999998643
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.4 Score=50.89 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
..| ..=++.+.++|+|+| |-+...+| +.+++..+|+.+ ++++-.-|-+ +..++.|+++|+|+|-+|+.
T Consensus 74 ~~~-~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~st-----leEal~a~~~Gad~I~TTl~ 141 (283)
T cd04727 74 IGH-FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGARN-----LGEALRRISEGAAMIRTKGE 141 (283)
T ss_pred hhH-HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCCC-----HHHHHHHHHCCCCEEEecCC
Confidence 344 455889999999999 87777888 688999999999 8887666554 67889999999999999987
Q ss_pred cCCCCCCC
Q psy15244 899 SMSGICSQ 906 (1427)
Q Consensus 899 GmG~~tgn 906 (1427)
| .||+
T Consensus 142 g---yT~~ 146 (283)
T cd04727 142 A---GTGN 146 (283)
T ss_pred C---CCCc
Confidence 4 4554
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.1 Score=52.83 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=42.7
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--ceeeeecCCCeEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK--TETLIHASADGVVKEI 1408 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK--me~~i~Ap~~G~V~~i 1408 (1427)
...|.||-+| ++...++.|+.|++||+|+.|-..= -..+++||.+|+|..+
T Consensus 231 ~~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4568999999 7789999999999999999996543 2346899999999765
|
ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=88.87 E-value=19 Score=38.61 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHH-----HHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNL-----VKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~-----~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
..++++.+.+.|++.+.+-....+.... +......+..+. .+.+.+.+. + ..+++...++.+
T Consensus 14 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~------~~~~~~~~a~~~ 80 (200)
T cd04722 14 PVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDL---PLGVQLAIN----D------AAAAVDIAAAAA 80 (200)
T ss_pred HHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCC---cEEEEEccC----C------chhhhhHHHHHH
Confidence 4556777888888887766544332211 112222333344 222322222 1 122233337888
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
.++|+|.|.|-...+.. |....++++.+++.+|++++..=+|.......+. +.++|++.|...-..-
T Consensus 81 ~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 81 RAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGGG 147 (200)
T ss_pred HHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCcC
Confidence 89999999998887754 8888999999999887788766666554433221 5788999997664433
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=88.79 E-value=22 Score=41.28 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=112.3
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCceeeeecccccccccCCCc--
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIPFQMILRGNSLVGYSNYSP-- 752 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~~qml~Rg~n~vgy~~~~~-- 752 (1427)
++.++.++.+ .+ .|++.+|++.+....-......+ +.++.+++.+ .+..+.+... ...++.+ ++
T Consensus 10 ~~l~~~l~~a---~~--~G~d~vEl~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~~--~~~~~~~-~~~~ 78 (279)
T cd00019 10 FGLENALKRA---KE--IGFDTVAMFLGNPRSWLSRPLKK---ERAEKFKAIAEEGPSICLSVHAP--YLINLAS-PDKE 78 (279)
T ss_pred ccHHHHHHHH---HH--cCCCEEEEEcCCCCccCCCCCCH---HHHHHHHHHHHHcCCCcEEEEcC--ceeccCC-CCHH
Confidence 5555555554 45 59999998643221100011111 4455555544 2345554321 1112211 22
Q ss_pred ------chHHHHHHHHHhcCCCEEEEeccCCh-----------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC-C
Q psy15244 753 ------AEVGAFCRLASQAGIDIFRVFDPLNS-----------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN-K 814 (1427)
Q Consensus 753 ------nvv~~~v~~a~~~Gid~~rif~~~nd-----------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~-~ 814 (1427)
+..+..++.|.+.|++.++++..... ++.+++.++.+++.|. . .++.... .+. .
T Consensus 79 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi---~--l~lEn~~---~~~~~ 150 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGV---V--IALETMA---GQGNE 150 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCC---E--EEEeCCC---CCCCC
Confidence 23466788889999999888655431 1355566666666666 2 2222221 111 1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEE-EEccccCcC-------CHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHH
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVL-CLKDMAGLL-------KPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i-~i~Dt~G~l-------~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laA 885 (1427)
...+.+.+.++++++-. -+.+ .+-|+.=+. +|....+.+..+.+.++ +-..++|.||..+...
T Consensus 151 ~~~t~~~~~~li~~v~~--~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~------ 222 (279)
T cd00019 151 IGSSFEELKEIIDLIKE--KPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG------ 222 (279)
T ss_pred CCCCHHHHHHHHHhcCC--CCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc------
Confidence 13566777777766630 2222 333544322 24456666777766653 2358999999765310
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC-CCCCCh
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK-RCGIDL 927 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~-~tgidl 927 (1427)
+ .. + .-..+ +.|..+...++..|+..|+ +-.+-+
T Consensus 223 ---~-~~-~-~~~~~--G~G~id~~~~l~~L~~~~y~~g~~~l 257 (279)
T cd00019 223 ---S-GK-D-RHEPI--GEGDIDGEELFKELKKDPYQNIPLIL 257 (279)
T ss_pred ---C-CC-c-cccCC--CCCCcCCHHHHHHHHhCcccCCCEEE
Confidence 0 00 0 11222 3466788899999999887 644444
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.71 E-value=8.4 Score=45.15 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCEEEEeccCCh----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~~ 824 (1427)
+.|.+|+++|.+.+-+=.|.-+ ++.-++.++.|+..|. .||+-|-..+. .++. ..++++...+
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv---sVEaElG~igg--~e~~~~~~~~~~~~T~peeA~~ 162 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDA---SVEAELGRLGG--QEDDLVVDEKDAMYTNPDAAAE 162 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeeccC--ccCCcccccccccCCCHHHHHH
Confidence 5689999999997654433333 3455788999999999 88887766542 2221 1346666666
Q ss_pred HHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 825 LAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++++ .|+|.+.++= .=|.- .|.-=.++++.+++.. ++||.+|. .+|+.--....|++.|+.-|+...
T Consensus 163 Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~-~iPLVlHG--gSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 163 FVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV-SIPLVLHG--ASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred HHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh-CCCEEEeC--CCCCCHHHHHHHHHCCCeEEEeCc
Confidence 6554 6999777642 22332 4555567889999887 88886665 668888899999999999998764
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.71 E-value=16 Score=42.27 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH---------------------HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV---------------------PNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNP 812 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~---------------------~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p 812 (1427)
.++++...+.|+|.+-+-.+.||- +.+-..++.+++. .. -. ..++|. +|
T Consensus 27 ~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~---pl-v~m~Y~----Np 98 (256)
T TIGR00262 27 LEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI---PI-GLLTYY----NL 98 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---CE-EEEEec----cH
Confidence 455777788999999999999963 1222334444433 22 12 245554 44
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 813 NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 813 ~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
-- .|- +.++++.+.++|++.+.+.|- .+++..+++..+++. ++...+=+..++-..-...+++...|.-.
T Consensus 99 i~-~~G---~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~--gl~~i~lv~P~T~~eri~~i~~~~~gfiy 168 (256)
T TIGR00262 99 IF-RKG---VEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKH--GVKPIFLVAPNADDERLKQIAEKSQGFVY 168 (256)
T ss_pred Hh-hhh---HHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHC--CCcEEEEECCCCCHHHHHHHHHhCCCCEE
Confidence 10 122 245677888999999999994 568888999999876 56666666666666555566666666655
Q ss_pred EEeccccCCCCC--CCCcHHHHHHHHHhC
Q psy15244 893 VDVAADSMSGIC--SQPAMGTIVSCLENT 919 (1427)
Q Consensus 893 VD~av~GmG~~t--gn~~lE~vv~~L~~~ 919 (1427)
+= |+.|..|-. -++++.+.+..++..
T Consensus 169 ~v-s~~G~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 169 LV-SRAGVTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred EE-ECCCCCCCcccCChhHHHHHHHHHhh
Confidence 43 345665543 345666777777653
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.5 Score=53.24 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcC-CEEEEEecCCCccCcccccc---ceEEEcCCCCCcccCCCCHHHHHHHHHhcCCC
Q psy15244 57 MEKILIANRSEVAIRVARACNEMG-IKSVGIYSEQDKFSAHRTKV---DQAFLVGKGMPPVAAYLNIPEIICIAKNNNVD 132 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elG-i~~vav~s~~d~~s~~~~~a---De~~~i~~~~~~~~~yldi~~Ii~ia~~~~vD 132 (1427)
|++|||+|.|.++..+++.|.+.| .++.+.+...+......... -++..+ +-.+.+++.++.++. |
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~v--------D~~d~~al~~li~~~--d 70 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQV--------DAADVDALVALIKDF--D 70 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEe--------cccChHHHHHHHhcC--C
Confidence 579999999999999999999999 78777765544322211111 112222 235678999999987 7
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCc
Q psy15244 133 AIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGT 190 (1427)
Q Consensus 133 aI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~ 190 (1427)
+|+-.-.+. -+..+.++|.+.|+.++--+..-- +.+..+..++++|+-..++.
T Consensus 71 ~VIn~~p~~-~~~~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a~~Agit~v~~~ 123 (389)
T COG1748 71 LVINAAPPF-VDLTILKACIKTGVDYVDTSYYEE----PPWKLDEEAKKAGITAVLGC 123 (389)
T ss_pred EEEEeCCch-hhHHHHHHHHHhCCCEEEcccCCc----hhhhhhHHHHHcCeEEEccc
Confidence 777653321 234788999999999873322211 13678888999998776654
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.60 E-value=18 Score=42.86 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCCEEEEeccC--------------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL--------------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~--------------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+.++.+.+.|+|.+-+-.+. .+.+.+.+.++.+++.-.. -+.+ - ..| +.+
T Consensus 115 ~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~--Pv~v----K---l~~-----~~~ 180 (299)
T cd02940 115 WTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI--PVIA----K---LTP-----NIT 180 (299)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC--CeEE----E---CCC-----Cch
Confidence 3445566666799988885554 2345677777777764320 1111 1 123 234
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCc------------------------CCH---HHHHHHHHHHHHHc-CCceEEEeec
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGL------------------------LKP---TAAKLLIGSFREKY-PNILIHVHTH 872 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~------------------------l~P---~~~~~lv~~lr~~~-p~ipi~~H~H 872 (1427)
.+.++++.+.++|+|-|.+..|... .-| ..+.+.|..+++.+ +++||-.-.=
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GG 260 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGG 260 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECC
Confidence 6889999999999999987665532 111 12467888899887 3788755333
Q ss_pred CCcchHHHHHHHHHHhcCCEEEeccccCCCCCCC
Q psy15244 873 DMAGTGVATTLACVKAGADIVDVAADSMSGICSQ 906 (1427)
Q Consensus 873 nd~GlA~An~laAi~AGad~VD~av~GmG~~tgn 906 (1427)
=..+ .-+++.+.+||+.|..+-.-|.++++.
T Consensus 261 I~~~---~da~~~l~aGA~~V~i~ta~~~~g~~~ 291 (299)
T cd02940 261 IESW---EDAAEFLLLGASVVQVCTAVMNQGFTI 291 (299)
T ss_pred CCCH---HHHHHHHHcCCChheEceeecccCCcH
Confidence 3333 345666679999999988888776553
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.45 Score=58.92 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=32.3
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
+...|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus 57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 45689999999999999999999999999999964
|
Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters. |
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=14 Score=44.72 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCH----HHHHHHHHHHHHHcCCceEEE-------eecCCcchHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP----TAAKLLIGSFREKYPNILIHV-------HTHDMAGTGVATTLA 884 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P----~~~~~lv~~lr~~~p~ipi~~-------H~Hnd~GlA~An~la 884 (1427)
..+.+.+++.++++.+.|++.++|. .| ..| +...++++.+|+.+|++.|+. |.=...|+.+--.+.
T Consensus 79 ~ls~eeI~~~a~~a~~~G~~ei~iv--~G-~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 79 TMSHEEILEIVKNSVKRGIKEVHIV--SA-HNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe--cc-CCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence 4688999999999999999999997 34 334 567789999999886444332 222267888855554
Q ss_pred -HHHhcCCEEEeccccCC-------CCCCCCcHHHHHHH---HHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccc
Q psy15244 885 -CVKAGADIVDVAADSMS-------GICSQPAMGTIVSC---LENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953 (1427)
Q Consensus 885 -Ai~AGad~VD~av~GmG-------~~tgn~~lE~vv~~---L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG 953 (1427)
-.+||++.+..+-.-+= =+++..+.+..+.. .+..|+.+.--+ ++|
T Consensus 156 ~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~-----------------------l~G 212 (353)
T PRK08444 156 DMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATM-----------------------LFG 212 (353)
T ss_pred HHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCcccee-----------------------EEe
Confidence 44689987653100000 03444454444443 334454432111 233
Q ss_pred cchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHC-CCCHHHHHHHHHHHHHHcCCCC
Q psy15244 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF-GLDFEDVKRAYRTANFLLGDII 1032 (1427)
Q Consensus 954 ~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~-gl~~~ev~~~~~~v~~~lG~~~ 1032 (1427)
-+ +......+.+...|..-. +.++.+.-+.+.=+|.|- .+ ... +....|.++.++-.|-.|.+++
T Consensus 213 ~g---Et~edrv~hl~~Lr~Lq~-----~t~gf~~fIp~~f~~~~t--~l----~~~~~~~~~e~Lr~iAi~Rl~L~~i~ 278 (353)
T PRK08444 213 HI---ENREHRIDHMLRLRDLQD-----KTGGFNAFIPLVYQRENN--YL----KVEKFPSSQEILKTIAISRILLDNIP 278 (353)
T ss_pred cC---CCHHHHHHHHHHHHHhcc-----ccCCceEEEecccCCCCC--cC----CCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 33 333344455555544321 111222223232223221 22 111 2367889999999999999876
Q ss_pred ccccchhhHHH-HHHHHHHcC
Q psy15244 1033 KCTPSSKVVAD-LAIFMTQEK 1052 (1427)
Q Consensus 1033 ~vTP~sq~vg~-~a~~~v~~~ 1052 (1427)
-+-.++-..|- .|+.....|
T Consensus 279 ni~a~w~~~g~~~~q~~L~~G 299 (353)
T PRK08444 279 HIKAYWATLTLNLALVAQEFG 299 (353)
T ss_pred ccccccccCcHHHHHHHHhcC
Confidence 66444433332 444444433
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=16 Score=43.07 Aligned_cols=208 Identities=13% Similarity=0.160 Sum_probs=117.4
Q ss_pred HHHHhhcCCccEEeccCCCchhhhhhccc--cChHHH----HHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHH
Q psy15244 688 PFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPWER----LAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRL 761 (1427)
Q Consensus 688 ~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~er----l~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~ 761 (1427)
....+ .|+..|=+.|.+.-...+.+-. --+|+. ++.|...+ ++|+.. =+ --||. -|.|+ ...|++
T Consensus 31 ri~e~--~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~-~iPvia--D~--d~GyG-~~~~v-~r~V~~ 101 (292)
T PRK11320 31 LLAER--AGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC-DLPLLV--DI--DTGFG-GAFNI-ARTVKS 101 (292)
T ss_pred HHHHH--cCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEE--EC--CCCCC-CHHHH-HHHHHH
Confidence 34445 6988886655332112222211 123433 33333332 244332 22 24777 67774 568899
Q ss_pred HHhcCCCEEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 762 ASQAGIDIFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 762 a~~~Gid~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
..++|+.-++|=|... +.+.+..-|++++++.. -....|.--.| -. .....+..++-++.
T Consensus 102 ~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~---~~d~~IiARTD---a~-~~~g~deAI~Ra~a 174 (292)
T PRK11320 102 MIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART---DPDFVIMARTD---AL-AVEGLDAAIERAQA 174 (292)
T ss_pred HHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc---CCCeEEEEecC---cc-cccCHHHHHHHHHH
Confidence 9999999999999752 45566666676766543 11122222212 11 13568889999999
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCc
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPA 908 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~ 908 (1427)
..++|||.|.+. |.-+++++.++.+.+ ++|+-+-.........-+.-.--+.|++.|-.....+ ++...+
T Consensus 175 Y~eAGAD~ifi~---~~~~~~~i~~~~~~~-----~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~--~aa~~a 244 (292)
T PRK11320 175 YVEAGADMIFPE---AMTELEMYRRFADAV-----KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAF--RAMNKA 244 (292)
T ss_pred HHHcCCCEEEec---CCCCHHHHHHHHHhc-----CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHH--HHHHHH
Confidence 999999999985 566777777666544 4566332221111111123345567999996554433 334445
Q ss_pred HHHHHHHHHhCCC
Q psy15244 909 MGTIVSCLENTDK 921 (1427)
Q Consensus 909 lE~vv~~L~~~g~ 921 (1427)
+..++..++..|.
T Consensus 245 ~~~~~~~l~~~g~ 257 (292)
T PRK11320 245 AENVYEAIRRDGT 257 (292)
T ss_pred HHHHHHHHHHcCC
Confidence 6666666665554
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=16 Score=41.94 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=113.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
=+.++++++|+.+.+ .|+..+=. |-+-|.--+++-+. .+.|+.|.+.....-+..+.. +-+.
T Consensus 26 Es~e~~~~~a~~~~~--~g~~~~r~g~~kpRts~~sf~G~G---~~gl~~L~~~~~~~Gl~~~Te----------v~d~- 89 (250)
T PRK13397 26 ESYDHIRLAASSAKK--LGYNYFRGGAYKPRTSAASFQGLG---LQGIRYLHEVCQEFGLLSVSE----------IMSE- 89 (250)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEecccCCCCCCcccCCCC---HHHHHHHHHHHHHcCCCEEEe----------eCCH-
Confidence 466889999999998 68766642 22222222222222 456777776654444443332 1222
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
..++.+.+ .+|++.|-... ..|. ..++++.+.|+ -+- --+| .-.+++.+...++.+.+.|.+
T Consensus 90 -~~v~~~~e-~vdilqIgs~~--~~n~-~LL~~va~tgk---PVi---lk~G-------~~~t~~e~~~A~e~i~~~Gn~ 151 (250)
T PRK13397 90 -RQLEEAYD-YLDVIQVGARN--MQNF-EFLKTLSHIDK---PIL---FKRG-------LMATIEEYLGALSYLQDTGKS 151 (250)
T ss_pred -HHHHHHHh-cCCEEEECccc--ccCH-HHHHHHHccCC---eEE---EeCC-------CCCCHHHHHHHHHHHHHcCCC
Confidence 22677767 59988886543 3332 23444555676 221 1221 147889999999999999998
Q ss_pred EEEEcc--ccCcCCHHH-HH--HHHHHHHHHcCCceEEE-eecCCcc---hHHHHHHHHHHhcCC--EEEecccc
Q psy15244 836 VLCLKD--MAGLLKPTA-AK--LLIGSFREKYPNILIHV-HTHDMAG---TGVATTLACVKAGAD--IVDVAADS 899 (1427)
Q Consensus 836 ~i~i~D--t~G~l~P~~-~~--~lv~~lr~~~p~ipi~~-H~Hnd~G---lA~An~laAi~AGad--~VD~av~G 899 (1427)
.|.|+- +.|.-+|.+ .. .-+..+|+.+ ++||.+ -+|- .| +-.+.+.+|+.+||| +|+.-.++
T Consensus 152 ~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~-~lPVivd~SHs-~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P 224 (250)
T PRK13397 152 NIILCERGVRGYDVETRNMLDIMAVPIIQQKT-DLPIIVDVSHS-TGRRDLLLPAAKIAKAVGANGIMMEVHPDP 224 (250)
T ss_pred eEEEEccccCCCCCccccccCHHHHHHHHHHh-CCCeEECCCCC-CcccchHHHHHHHHHHhCCCEEEEEecCCc
Confidence 888886 444444433 22 3467888877 789655 2344 33 344778999999999 88776554
|
|
| >TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.52 Score=56.24 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=31.3
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|.||.+|+|.+++|++||.|++||+|++|+
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld 74 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLD 74 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEEC
Confidence 577999999999999999999999999999986
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=88.29 E-value=47 Score=39.89 Aligned_cols=219 Identities=13% Similarity=0.041 Sum_probs=118.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhc----cc----cChHHHHHHHHHhCCCCceeeeeccccccccc
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKF----LK----ECPWERLAELRELIPNIPFQMILRGNSLVGYS 748 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rf----l~----e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~ 748 (1427)
.++.+++++.++.+.+ .|+..+-+.||-..+-.+.+ +. ++..+.++.+.+......+ ....
T Consensus 40 ~ls~eei~~~~~~~~~--~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~---~~~~------ 108 (336)
T PRK06245 40 LLSPEEVKEILRRGAD--AGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGL---LPHT------ 108 (336)
T ss_pred cCCHHHHHHHHHHHHH--CCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC---Cccc------
Confidence 5899999999999988 79999888777542222111 11 2344556555543321100 0001
Q ss_pred CCCcchHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 749 NYSPAEVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 749 ~~~~nvv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
.+..+-.+.++..++.|++.--...+.+ .......+++.+++.|. .+...+.|. + .
T Consensus 109 -~~~~lt~e~i~~Lk~ag~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi---~~~~~~i~G--~-g--- 178 (336)
T PRK06245 109 -NAGILTREEMEKLKEVNASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKI---PFTTGILIG--I-G--- 178 (336)
T ss_pred -cCCCCCHHHHHHHHHhCCCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCC---ceeeeeeeE--C-C---
Confidence 1222334445555554433111112222 12334567788888888 565556655 1 1
Q ss_pred CCCCHHHHHH---HHHHHH-HC-CCCEEEE------ccc----cCcCCHHHHHHHHHHHHHHcCC-ceEEEeecCCcchH
Q psy15244 815 KKYSLNYYED---LAKQLV-ES-GAQVLCL------KDM----AGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGTG 878 (1427)
Q Consensus 815 ~~~~~~~~~~---~a~~l~-~~-Gad~i~i------~Dt----~G~l~P~~~~~lv~~lr~~~p~-ipi~~H~Hnd~GlA 878 (1427)
-+.+..++ .++.+. +. |++.+.+ ..| .....+.+..+++...|..+|+ +.|..- -++|.
T Consensus 179 --Et~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~~i~i~~~--~~~~~- 253 (336)
T PRK06245 179 --ETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPDISIQVP--PNLNR- 253 (336)
T ss_pred --CCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCCCceEecC--Cccch-
Confidence 23344444 444443 22 2444331 122 1235668888888888888853 333222 24444
Q ss_pred HHHHHHHHHhcCCEEEeccccCCCCCC----CCcHHHHHHHHHhCCCC
Q psy15244 879 VATTLACVKAGADIVDVAADSMSGICS----QPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 879 ~An~laAi~AGad~VD~av~GmG~~tg----n~~lE~vv~~L~~~g~~ 922 (1427)
.-...++.+||+-+++++..-|+--. .++.++++.+++..|+.
T Consensus 254 -~~~~~~L~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 300 (336)
T PRK06245 254 -DTGLLLLDAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAGWP 300 (336)
T ss_pred -HHHHHHHhcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcCCC
Confidence 33445699999999888764333211 35788999988887654
|
|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=37 Score=39.37 Aligned_cols=208 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH-
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC- 759 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v- 759 (1427)
.++...++.+.+ .|++.+|+|.+.-.......+.+.-.+.++++.+...=.......-+.-........+.+.+..+
T Consensus 12 ~~~~~~l~~~~~--~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~ 89 (281)
T PRK01060 12 GGLEGAVAEAAE--IGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRD 89 (281)
T ss_pred CCHHHHHHHHHH--cCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHH
Q ss_pred ------HHHHhcCCCEEEEeccCC--------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC--CCHHHHH
Q psy15244 760 ------RLASQAGIDIFRVFDPLN--------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK--YSLNYYE 823 (1427)
Q Consensus 760 ------~~a~~~Gid~~rif~~~n--------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~--~~~~~~~ 823 (1427)
+.|.+.|++.+.+..... .++.+.++++.+.+... -+..+|... ....+. .+.+.+.
T Consensus 90 ~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~---gv~l~iEn~----~~~~~~~~~~~~~~~ 162 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQ---GVTIVLENT----AGQGSELGRRFEELA 162 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCC---CCEEEEecC----CCCCCcccCCHHHHH
Q ss_pred HHHHHHHHCCCCE-EEEc-ccc-----CcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 824 DLAKQLVESGAQV-LCLK-DMA-----GLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 824 ~~a~~l~~~Gad~-i~i~-Dt~-----G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++++.+ +-+. +.++ |+. |.-.+....+++..+.+.++ +--.++|.||+.+
T Consensus 163 ~l~~~v---~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~------------------- 220 (281)
T PRK01060 163 RIIDGV---EDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKN------------------- 220 (281)
T ss_pred HHHHhc---CCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCC-------------------
Q ss_pred ccccCCCCC--------CCCcHHHHHHHHHhCCCC
Q psy15244 896 AADSMSGIC--------SQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 896 av~GmG~~t--------gn~~lE~vv~~L~~~g~~ 922 (1427)
+.|++. |..+...++.+|+..|++
T Consensus 221 ---~~~~~~d~H~~~G~G~id~~~~~~~L~~~~y~ 252 (281)
T PRK01060 221 ---EFGSRKDRHANLGEGTIGFDALRYIVHDPRFD 252 (281)
T ss_pred ---cccCCCCcccCCcCCcCCHHHHHHHHhCcccC
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=88.19 E-value=13 Score=43.05 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCH-----------HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP-----------TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P-----------~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
.+.+..++.++++.+.|||+|-|. ++...| +++..+|+.+++.+ ++||.+-+=+ ...+.+|
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG--~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT~~-----~~v~~aa 92 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIG--GESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDTFN-----AEVAEAA 92 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC--CCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCc-----HHHHHHH
Confidence 589999999999999999999886 233333 45777888888776 8899876654 4666789
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC--------CCCCC-----------hhhHHHHHHHHHHHhCCCCC
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK--------RCGID-----------LHDVCDYSSYWRKVRELYAP 946 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~--------~tgid-----------l~~L~~l~~~v~~~~g~~~~ 946 (1427)
+++|+++|+..- |. ...+.+..++ ++.+. ..+.+ -+.+..+.+.+++....-++
T Consensus 93 L~~g~~iINdis-~~---~~~~~~~~l~---~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~ 165 (258)
T cd00423 93 LKAGADIINDVS-GG---RGDPEMAPLA---AEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIP 165 (258)
T ss_pred HHhCCCEEEeCC-CC---CCChHHHHHH---HHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999987553 22 2223433333 33221 11111 11244445555556555555
Q ss_pred CCC----cccccchhhhhHHHHHHHHHHhhhhcCCC-CCCCCCcCcccEEEec
Q psy15244 947 AHN----LLWRCGIDLHDVCDYSSYWRKVRELYAPF-ECTDLKAASSEAYLYE 994 (1427)
Q Consensus 947 ~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~~f-~~~~~~g~~~~v~~~~ 994 (1427)
.++ |.+|- .. ...+.-.+.+.-..|..| ..|-+.|.++.-...+
T Consensus 166 ~~~IilDPg~g~---~k-~~~~~~~~l~~i~~~~~~~g~Pil~G~Snksf~~~ 214 (258)
T cd00423 166 PEDIILDPGIGF---GK-TEEHNLELLRRLDAFRELPGLPLLLGVSRKSFLGD 214 (258)
T ss_pred HHHEEEeCCCCc---cC-CHHHHHHHHHHHHHHHhcCCCcEEEEeccchhhcc
Confidence 555 55552 22 223333344443445555 4466666665555543
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=16 Score=43.84 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=86.4
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCC-ceeeeecccccccccCCCcchH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNI-PFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~-~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.++.+++..+++.+.+ .|+..|-+.||-- +++.+=.+-++.+++. +.. .+.+..-|. .+
T Consensus 44 ~ls~eei~~li~~~~~--~Gv~~I~~tGGEP------llr~dl~~li~~i~~~-~~l~~i~itTNG~-----------ll 103 (329)
T PRK13361 44 VLSLEELAWLAQAFTE--LGVRKIRLTGGEP------LVRRGCDQLVARLGKL-PGLEELSLTTNGS-----------RL 103 (329)
T ss_pred CCCHHHHHHHHHHHHH--CCCCEEEEECcCC------CccccHHHHHHHHHhC-CCCceEEEEeChh-----------HH
Confidence 5899999999999988 7999999888754 4555544445555543 332 244433331 12
Q ss_pred HHHHHHHHhcCCCEEEEeccC-C-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPL-N-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~-n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...++|++.+.|..-. + +++.+..+++.+++.|.. .+....... + ..+.+.+.
T Consensus 104 ~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~--~v~in~v~~-----~---g~N~~ei~ 173 (329)
T PRK13361 104 ARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFE--RIKLNAVIL-----R---GQNDDEVL 173 (329)
T ss_pred HHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCC--ceEEEEEEE-----C---CCCHHHHH
Confidence 345777788999988775432 2 245677788888888862 122221111 1 36778999
Q ss_pred HHHHHHHHCCCCEEE
Q psy15244 824 DLAKQLVESGAQVLC 838 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~ 838 (1427)
++++.+.+.|++...
T Consensus 174 ~~~~~~~~~gi~~~~ 188 (329)
T PRK13361 174 DLVEFCRERGLDIAF 188 (329)
T ss_pred HHHHHHHhcCCeEEE
Confidence 999999999998543
|
|
| >COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.16 E-value=1.1 Score=55.17 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=48.9
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
+|...+|.++.||++ .. |+.-+.+|- |+ ...+|-||..|+|.++++
T Consensus 16 EG~I~~W~~k~GD~V-----------~~-gd~L~eVeT-------DK---------------a~~EV~ap~~G~l~~i~~ 61 (404)
T COG0508 16 EGTIVEWLKKVGDKV-----------KE-GDVLVEVET-------DK---------------ATMEVPAPDAGVLAKILV 61 (404)
T ss_pred eEEEEEEecCCCCee-----------cC-CCeeEEEEc-------Cc---------------eeEEecCCCCeEEEEEec
Confidence 688999999999997 22 322222221 11 235789999999999999
Q ss_pred cCCCEEecCCEEEEEEcC
Q psy15244 1374 KVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieam 1391 (1427)
++||.|.-|++|+.|+.-
T Consensus 62 ~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 62 EEGDTVPVGAVIARIEEE 79 (404)
T ss_pred cCCCEEcCCCeEEEEecC
Confidence 999999999999999874
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=7.1 Score=48.62 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=84.1
Q ss_pred HHHHHhcCCCEEEEecc---------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDP---------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~---------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
++.|+++|+|.|-+-.. .-..+.++++++.+++.|. .+-.++..- +. ..+.+.+.+..+.+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~---kvyvt~n~i-----~~--e~el~~~~~~l~~l 85 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGK---KFYVVVNIA-----PH--NAKLKTFIRDLEPV 85 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCC---EEEEEecCc-----CC--HHHHHHHHHHHHHH
Confidence 78899999999888322 1134789999999999998 554443211 11 24567788889999
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcc-hHHHHHHHHHHhcCCEEEeccccCCCCCCCCc
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAG-TGVATTLACVKAGADIVDVAADSMSGICSQPA 908 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~G-lA~An~laAi~AGad~VD~av~GmG~~tgn~~ 908 (1427)
.++|+|.|.+.|. | ++..+++..|+++||+-+.-+.- ...++.+ .+.|++.|-.+- --+
T Consensus 86 ~~~gvDgvIV~d~-G---------~l~~~ke~~p~l~ih~stqlni~N~~a~~f~--~~lG~~rvvLSr--------ELs 145 (443)
T PRK15452 86 IAMKPDALIMSDP-G---------LIMMVREHFPEMPIHLSVQANAVNWATVKFW--QQMGLTRVILSR--------ELS 145 (443)
T ss_pred HhCCCCEEEEcCH-H---------HHHHHHHhCCCCeEEEEecccCCCHHHHHHH--HHCCCcEEEECC--------cCC
Confidence 9999999999983 3 34566777788988775432222 2222333 357998875443 235
Q ss_pred HHHHHHHH
Q psy15244 909 MGTIVSCL 916 (1427)
Q Consensus 909 lE~vv~~L 916 (1427)
++++-...
T Consensus 146 l~EI~~i~ 153 (443)
T PRK15452 146 LEEIEEIR 153 (443)
T ss_pred HHHHHHHH
Confidence 66665544
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=61 Score=37.99 Aligned_cols=208 Identities=11% Similarity=0.042 Sum_probs=128.5
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec-cCCCchhhhhhccccChHHHH----HHHHHhCCCCceeeeecccccccccCCCc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM-WGGAVSHTCLKFLKECPWERL----AELRELIPNIPFQMILRGNSLVGYSNYSP 752 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~-~ggatfd~~~rfl~e~p~erl----~~lr~~~p~~~~qml~Rg~n~vgy~~~~~ 752 (1427)
++.+++++.|+...+ .|+..+=+ .+|-++ ++..++++ +.+++..|++.+.. + .|+.
T Consensus 40 ~s~eeI~~~a~~a~~--~g~~~~~lv~sg~~~-------~~~~~e~~~ei~~~ik~~~p~l~i~~-s-----~G~~---- 100 (279)
T PRK08508 40 KDIEQIVQEAKMAKA--NGALGFCLVTSGRGL-------DDKKLEYVAEAAKAVKKEVPGLHLIA-C-----NGTA---- 100 (279)
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEeccCCC-------CcccHHHHHHHHHHHHhhCCCcEEEe-c-----CCCC----
Confidence 789999999998776 58876654 333322 23345554 45555555543211 1 1322
Q ss_pred chHHHHHHHHHhcCCCEEEEeccC-----------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPL-----------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~-----------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
..+.+++..++|+|.+.+-.-. .+++...+.++.++++|+ .+...+.+.- .-+.+.
T Consensus 101 --~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi---~v~sg~I~Gl--------GEt~ed 167 (279)
T PRK08508 101 --SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL---GLCSGGIFGL--------GESWED 167 (279)
T ss_pred --CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC---eecceeEEec--------CCCHHH
Confidence 2445778889999988853221 234556667888999999 6666655541 357889
Q ss_pred HHHHHHHHHHCCCCEEEE------cccc---CcCCHHHHHHHHHHHHHHcCCceEEEeec--CCcchHHHHHHHHHHhcC
Q psy15244 822 YEDLAKQLVESGAQVLCL------KDMA---GLLKPTAAKLLIGSFREKYPNILIHVHTH--DMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i------~Dt~---G~l~P~~~~~lv~~lr~~~p~ipi~~H~H--nd~GlA~An~laAi~AGa 890 (1427)
.++.+..+.+.+.+.+-+ ..|- .-+.|.++..++...|-.+|+..|-+=.= ..+| ..-..++.|||
T Consensus 168 ~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~---~~~~~~~~~g~ 244 (279)
T PRK08508 168 RISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFG---ERQYEIFEAGA 244 (279)
T ss_pred HHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhch---hhHHHHHhcCC
Confidence 999999999999884432 2221 13678888888888887788766655331 1111 12356888998
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
+.+ -+..+=-..| .+.++=..+++..|+..
T Consensus 245 n~~--~~g~~lt~~g-~~~~~d~~~~~~~~~~~ 274 (279)
T PRK08508 245 NAI--VIGDYLTTKG-EAPKKDIEKLKSLGFEI 274 (279)
T ss_pred cce--eecCcccCCC-CChHHHHHHHHHcCCCc
Confidence 874 3444423333 45555566777777653
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=87.94 E-value=21 Score=38.74 Aligned_cols=144 Identities=14% Similarity=0.076 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Ga 834 (1427)
....++.+.+.|++.+.+.- +.++...+.+..... .+-+.+. .+. +....+...+.++.+.++|+
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g-----~~i~~~~~~~~~~~~---~v~~~v~------~~~-~~~~~~~~~~~a~~a~~~Ga 79 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP-----GYVRLAADALAGSDV---PVIVVVG------FPT-GLTTTEVKVAEVEEAIDLGA 79 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH-----HHHHHHHHHhCCCCC---eEEEEec------CCC-CCCcHHHHHHHHHHHHHcCC
Confidence 55668888899999988775 333333333221012 2222211 221 11347888899999999999
Q ss_pred CEEEEccccCcCC---HHHHHHHHHHHHHHc-CCceEEEee--cCCcchHHHH--HHHHHHhcCCEEEeccccCCCCCCC
Q psy15244 835 QVLCLKDMAGLLK---PTAAKLLIGSFREKY-PNILIHVHT--HDMAGTGVAT--TLACVKAGADIVDVAADSMSGICSQ 906 (1427)
Q Consensus 835 d~i~i~Dt~G~l~---P~~~~~lv~~lr~~~-p~ipi~~H~--Hnd~GlA~An--~laAi~AGad~VD~av~GmG~~tgn 906 (1427)
|.+.+.-..+... ++.+.+.++.+.+.. +++|+-+.. +.+....... +..+.+.|++.|..+.... +++
T Consensus 80 d~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~---~~~ 156 (201)
T cd00945 80 DEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG---GGG 156 (201)
T ss_pred CEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC---CCC
Confidence 9988765554433 577888888998884 367765433 2221222111 2234679999999887433 244
Q ss_pred CcHHHHHHHH
Q psy15244 907 PAMGTIVSCL 916 (1427)
Q Consensus 907 ~~lE~vv~~L 916 (1427)
..++.+....
T Consensus 157 ~~~~~~~~i~ 166 (201)
T cd00945 157 ATVEDVKLMK 166 (201)
T ss_pred CCHHHHHHHH
Confidence 4555544433
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.93 E-value=9.5 Score=42.63 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC-CceeeeecccccccccCCCcchHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN-IPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~-~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
+.++.+++++.+.+ .|+..+|+. +-.++..+.++.+++..++ ..+.. | .| +..+
T Consensus 20 ~~~~~~~~~~a~~~--gGi~~iEvt----------~~~~~~~~~i~~l~~~~~~~~~iGa---G--TV--------~~~~ 74 (206)
T PRK09140 20 TPDEALAHVGALIE--AGFRAIEIP----------LNSPDPFDSIAALVKALGDRALIGA---G--TV--------LSPE 74 (206)
T ss_pred CHHHHHHHHHHHHH--CCCCEEEEe----------CCCccHHHHHHHHHHHcCCCcEEeE---E--ec--------CCHH
Confidence 56889999999988 899999985 2345667789999988874 22211 1 11 1234
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.|.++|.+.+.. +..+.+ .+++++..|. .+-.. .++++. +.++.++|+|.|
T Consensus 75 ~~~~a~~aGA~fivs--p~~~~~----v~~~~~~~~~---~~~~G-------------~~t~~E----~~~A~~~Gad~v 128 (206)
T PRK09140 75 QVDRLADAGGRLIVT--PNTDPE----VIRRAVALGM---VVMPG-------------VATPTE----AFAALRAGAQAL 128 (206)
T ss_pred HHHHHHHcCCCEEEC--CCCCHH----HHHHHHHCCC---cEEcc-------------cCCHHH----HHHHHHcCCCEE
Confidence 589999999998765 333333 3344556666 22111 355544 345667899999
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.+--+ +.+.|. .++.+++.+| ++|+-.= -|....|.-.-+++|++.|=
T Consensus 129 k~Fpa-~~~G~~----~l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 129 KLFPA-SQLGPA----GIKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred EECCC-CCCCHH----HHHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEE
Confidence 87322 223344 4566666665 5776442 37888999999999999874
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=87.91 E-value=6.8 Score=46.81 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeec----------cCCC---------CCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAG----------DLTN---------PNKKK 816 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~----------d~~~---------p~~~~ 816 (1427)
....+.++.+|+..+|-+-+..+.. ++.++ +.|. ..-..+.++| |+.- .....
T Consensus 45 ~~~~~~~l~~GvTtv~d~g~~~~~~-~~~~~----~~g~---~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (342)
T cd01299 45 TRQARAALRAGFTTVRDAGGADYGL-LRDAI----DAGL---IPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVV 116 (342)
T ss_pred HHHHHHHHhCCCcEEEeCCCcchHH-HHHHH----HcCC---ccCCceeecchhhcccCCCCccccccccccccCCccee
Confidence 3457788889999988665544333 33333 3333 1111111111 1100 01113
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccC-----------cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAG-----------LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G-----------~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
.+++...+.++++.+.|++.|-+.=+-+ .+.++....+++..++. ++++.+|++.+ .....+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~~-----~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYGA-----EAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCCH-----HHHHHH
Confidence 4578888899999999999887664322 46788888888887765 78999999864 345578
Q ss_pred HHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 886 VKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 886 i~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
+++|++.+.=+. .-.++.+..|+..|.
T Consensus 190 l~~G~~~i~H~~---------~~~~~~~~~l~~~g~ 216 (342)
T cd01299 190 IRAGVDTIEHGF---------LIDDETIELMKEKGI 216 (342)
T ss_pred HHcCCCEEeecC---------CCCHHHHHHHHHCCc
Confidence 889988664321 112456666766654
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=87.79 E-value=4.4 Score=49.69 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCc------cc-cccceEEEcCCCCCcccCCCCHHHHHHHH
Q psy15244 55 KTMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSA------HR-TKVDQAFLVGKGMPPVAAYLNIPEIICIA 126 (1427)
Q Consensus 55 ~~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~------~~-~~aDe~~~i~~~~~~~~~yldi~~Ii~ia 126 (1427)
...+||||.| .|.++..+++.+.+.|++++++..+...... .. ....-.+. ..+..|.+.+.+++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v-------~~Dl~d~~~l~~~~ 130 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVV-------FGDVTDADSLRKVL 130 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEE-------EeeCCCHHHHHHHH
Confidence 3467999999 5999999999999999999888654432110 00 00010111 12356778888888
Q ss_pred Hhc--CCCEEEeCC
Q psy15244 127 KNN--NVDAIHPGY 138 (1427)
Q Consensus 127 ~~~--~vDaI~pg~ 138 (1427)
+.. ++|.|+-..
T Consensus 131 ~~~~~~~D~Vi~~a 144 (390)
T PLN02657 131 FSEGDPVDVVVSCL 144 (390)
T ss_pred HHhCCCCcEEEECC
Confidence 765 699998543
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=87.77 E-value=4.3 Score=49.60 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV 792 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~ 792 (1427)
.+++.+.++++.+.+.|++.|++.|..-. ...+...++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 45566777888888888888888887763 34566666665543
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=50 Score=38.77 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=96.3
Q ss_pred EEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHH----HHHHhCCCCce
Q psy15244 660 LLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLA----ELRELIPNIPF 735 (1427)
Q Consensus 660 ~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~----~lr~~~p~~~~ 735 (1427)
.+|--+|=||.+. ++.+..++-|..+-+ .|.+.|++||.+|-..+-.--.+..|+|+. .|++.. ++++
T Consensus 22 NvTpDSFsdgg~~-----~~~~~a~~~a~~~~~--~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I 93 (282)
T PRK11613 22 NVTPDSFSDGGTH-----NSLIDAVKHANLMIN--AGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI 93 (282)
T ss_pred cCCCCCCCCCCCC-----CCHHHHHHHHHHHHH--CCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE
Confidence 4566668888763 466778887777766 699999999876622221111223466654 233221 3333
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
+. ..|- -+.+++|.++|+++++=..++++- +|.. .+++.|. - ..++.+ -+.|...
T Consensus 94 SI----------DT~~----~~va~~AL~~GadiINDI~g~~d~-~~~~---~~a~~~~---~--vVlmh~--~g~p~~~ 148 (282)
T PRK11613 94 SV----------DTSK----PEVIRESAKAGAHIINDIRSLSEP-GALE---AAAETGL---P--VCLMHM--QGNPKTM 148 (282)
T ss_pred EE----------ECCC----HHHHHHHHHcCCCEEEECCCCCCH-HHHH---HHHHcCC---C--EEEEcC--CCCCCcc
Confidence 22 2232 334778888999998666666543 3322 2455555 1 223332 1233211
Q ss_pred ----CCC------HHHHHHHHHHHHHCCCC--EEEEccc-cCcCC-HHHHHHHHHHHHH--HcCCceE
Q psy15244 816 ----KYS------LNYYEDLAKQLVESGAQ--VLCLKDM-AGLLK-PTAAKLLIGSFRE--KYPNILI 867 (1427)
Q Consensus 816 ----~~~------~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l~-P~~~~~lv~~lr~--~~p~ipi 867 (1427)
.|+ .+++.+.++.+.++|+. .|.+ |- .|..+ +.+-.++++.+.. .+ +.|+
T Consensus 149 ~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~k~~~~n~~ll~~l~~l~~l-g~Pi 214 (282)
T PRK11613 149 QEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL-DPGFGFGKNLSHNYQLLARLAEFHHF-NLPL 214 (282)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcCCCHHHHHHHHHHHHHHHhC-CCCE
Confidence 111 36788888899999986 4433 54 24433 4566677766643 23 5664
|
|
| >PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed | Back alignment and domain information |
|---|
Probab=87.74 E-value=1 Score=55.13 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=45.7
Q ss_pred EEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.-..|+.++.-..-.....+++. .+..|.++.+|+|.++.+++||.|++||+|+.|+
T Consensus 38 V~v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld 95 (385)
T PRK09578 38 ATVVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRID 95 (385)
T ss_pred eEEEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEEC
Confidence 444566666644444555677765 5789999999999999999999999999999986
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.74 E-value=2.6 Score=53.28 Aligned_cols=69 Identities=29% Similarity=0.397 Sum_probs=55.7
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
.+.++.+.++|++.|.+-++-|. +..+.+.++.+++.+|++||.+ -.++....+..++++|||+|++.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 78899999999998866444454 4678899999999999999887 335556778899999999999754
|
|
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=87.71 E-value=21 Score=42.68 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=104.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc--ChHHHHHHHHHhCCCCc-eeeeecccccccccCCCcc
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE--CPWERLAELRELIPNIP-FQMILRGNSLVGYSNYSPA 753 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e--~p~erl~~lr~~~p~~~-~qml~Rg~n~vgy~~~~~n 753 (1427)
.++.++..++.+++... .|+..+-+.||--+ +.. +=++-++.+++ .+... +.+..|+. ...|.-
T Consensus 118 ~l~~~e~~~~i~~i~~~-~~I~~VilSGGDPl------~~~~~~L~~ll~~l~~-i~~v~~iri~Tr~~-----v~~p~r 184 (321)
T TIGR03822 118 VLSPAELDAAFAYIADH-PEIWEVILTGGDPL------VLSPRRLGDIMARLAA-IDHVKIVRFHTRVP-----VADPAR 184 (321)
T ss_pred cCCHHHHHHHHHHHHhC-CCccEEEEeCCCcc------cCCHHHHHHHHHHHHh-CCCccEEEEeCCCc-----ccChhh
Confidence 36778899998888742 68988888887542 221 11233444544 34332 33333321 112334
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
+-.+.++...++|..+ .|....|+. +....+++.++++|. .+........ .. ..+.+.+.++.+.+
T Consensus 185 it~ell~~L~~~g~~v-~i~l~~~h~~el~~~~~~ai~~L~~~Gi---~v~~q~vLl~---gv---Nd~~~~l~~l~~~l 254 (321)
T TIGR03822 185 VTPALIAALKTSGKTV-YVALHANHARELTAEARAACARLIDAGI---PMVSQSVLLR---GV---NDDPETLAALMRAF 254 (321)
T ss_pred cCHHHHHHHHHcCCcE-EEEecCCChhhcCHHHHHHHHHHHHcCC---EEEEEeeEeC---CC---CCCHHHHHHHHHHH
Confidence 4567788888889653 455555544 456788889999998 4443222221 11 36788899999999
Q ss_pred HHCCCC--EEEEccccCc-----CCHHHHHHHHHHHHHHcCC
Q psy15244 830 VESGAQ--VLCLKDMAGL-----LKPTAAKLLIGSFREKYPN 864 (1427)
Q Consensus 830 ~~~Gad--~i~i~Dt~G~-----l~P~~~~~lv~~lr~~~p~ 864 (1427)
.++|+. .+...|.++. ..+.+..+++..+++.+++
T Consensus 255 ~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 255 VECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG 296 (321)
T ss_pred HhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 999987 4566777732 5567899999999998864
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=87.62 E-value=58 Score=39.69 Aligned_cols=214 Identities=9% Similarity=0.046 Sum_probs=122.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhh-hhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHT-CLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~-~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
..++.+++++.++.+.+ .|+..+=+-||-+... .+.+ -.+.++.+++..|.+.+.. .| +
T Consensus 101 ~~Ls~eEI~~~a~~~~~--~Gv~~i~lvgGe~p~~~~~e~----l~eii~~Ik~~~p~i~Iei------------~~--l 160 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKK--SGFKEILLVTGESEKAAGVEY----IAEAIKLAREYFSSLAIEV------------QP--L 160 (366)
T ss_pred CcCCHHHHHHHHHHHHh--CCCCEEEEeeCCCCCCCCHHH----HHHHHHHHHHhCCcccccc------------cc--C
Confidence 45799999999999988 6998877654432210 0111 1234566666665444321 11 2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC---------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN---------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSL 819 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n---------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~ 819 (1427)
-.+.++..+++|++.+.++.-.. +.+.-..+++.++++|+. .+...+.+. -+. +.
T Consensus 161 t~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~--~v~~g~i~G----l~e----~~ 230 (366)
T TIGR02351 161 NEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR--KIGIGALLG----LDD----WR 230 (366)
T ss_pred CHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC--eeceeEEEe----Cch----hH
Confidence 23447888899999998865553 334446688999999981 133333332 221 33
Q ss_pred HHHHHHHHHHHHCCC------CEEE---Ecc------ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 820 NYYEDLAKQLVESGA------QVLC---LKD------MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Ga------d~i~---i~D------t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
...++++..+..++. +.|. |.. ....++|..+.+++..+|-.+|+..|-+-+=-..-+. -.
T Consensus 231 ~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr----d~ 306 (366)
T TIGR02351 231 TDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR----DN 306 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH----HH
Confidence 333444444333332 2322 222 2345778999999999998899888777654432221 01
Q ss_pred HHHhcCCEEEe----ccccCCCCCC---------CCcHHHHHHHHHhCCCCC
Q psy15244 885 CVKAGADIVDV----AADSMSGICS---------QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 885 Ai~AGad~VD~----av~GmG~~tg---------n~~lE~vv~~L~~~g~~t 923 (1427)
.+..|+..+.+ .++|+....| +-++++++.+|+..|+++
T Consensus 307 ~~~~~~~~~~a~~~~~~G~y~~~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~ 358 (366)
T TIGR02351 307 VIPLGITKMSAGSSTEPGGYSSEKKGLEQFEISDERSVAEVEEDLRSKGLQP 358 (366)
T ss_pred HHhhcceeeccCcccCCCCcCCCCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence 11233333221 2334433223 147788899998888775
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=87.57 E-value=17 Score=43.67 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccC-cCCHHHHHHHHHHHHHHcCCceEEEee---------cCCcchHHHHHH-H
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAG-LLKPTAAKLLIGSFREKYPNILIHVHT---------HDMAGTGVATTL-A 884 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G-~l~P~~~~~lv~~lr~~~p~ipi~~H~---------Hnd~GlA~An~l-a 884 (1427)
..+++.+++.++.+.+.|++.|+|.+-.- .+.++.+.++++.+++..|++. +|+ -...|+-....+ .
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~--~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIH--IHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcC--CCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 57899999999999999999999953211 2344556789999998875443 332 123455433344 3
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHH
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDY 964 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~ 964 (1427)
--+||++.++. .| .|.+-..+.+.-.....+.+...+..+...+ .|+++.. .-++|-+=-.+..-.|
T Consensus 149 Lk~aG~~~~~~----~g-------~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~-~Gi~v~~-~~iiGlgEt~ed~~~~ 215 (340)
T TIGR03699 149 LKEAGLDSIPG----GG-------AEILSDRVRKIISPKKISSEEWLEVMETAHK-LGLPTTA-TMMFGHVETLEDRIEH 215 (340)
T ss_pred HHHcCCCcCCC----Cc-------ccccCHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCCccc-eeEeeCCCCHHHHHHH
Confidence 44689997752 11 1111111111100111233333333333322 3443321 2255532111334444
Q ss_pred HHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccchhhHH-
Q psy15244 965 SSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVA- 1042 (1427)
Q Consensus 965 ~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg- 1042 (1427)
...+.+.......|. .-+-+. ..+|..+.+ .-.....+.++.++..|-.+.+++.++-+-...|
T Consensus 216 l~~l~~l~~~~~~~~--------~fIP~~f~p~~tpl~~------~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~~~~g~ 281 (340)
T TIGR03699 216 LERIRELQDKTGGFT--------AFIPWTFQPGNTELGK------KRPATSTEYLKVLAISRIFLDNIPNIQASWVTQGK 281 (340)
T ss_pred HHHHHHhchhhCCee--------EEEeecccCCCCcccC------CCCCCHHHHHHHHHHHHHcCCCCCcccCCccccCh
Confidence 444444433332221 001110 012322111 0123678899999999999998766666555566
Q ss_pred HHHHHHHH
Q psy15244 1043 DLAIFMTQ 1050 (1427)
Q Consensus 1043 ~~a~~~v~ 1050 (1427)
+++.+...
T Consensus 282 ~~~~~~l~ 289 (340)
T TIGR03699 282 EVGQLALH 289 (340)
T ss_pred HHHHHHHh
Confidence 44444343
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.3 Score=49.27 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
++-..|+.+ ++.++++|+|.| |-+-.++| +.+++..+|+.| ++|+-.-+-| +..++.|+++|+|+|-+
T Consensus 80 k~Righ~~E-a~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~~-----l~EAlrai~~GadmI~T 147 (293)
T PRK04180 80 KARIGHFVE-AQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGARN-----LGEALRRIAEGAAMIRT 147 (293)
T ss_pred eehhhHHHH-HHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCeeec
Confidence 444555554 889999999999 88888999 679999999999 8887766655 67779999999999988
Q ss_pred c
Q psy15244 896 A 896 (1427)
Q Consensus 896 a 896 (1427)
+
T Consensus 148 t 148 (293)
T PRK04180 148 K 148 (293)
T ss_pred c
Confidence 7
|
|
| >PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.62 Score=48.93 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=38.3
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCcee-eeecCCCeEEEEEEecC
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTET-LIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~-~i~Ap~~G~V~~i~v~~ 1412 (1427)
|..|..+.+.+.+|+.|++||.|+.+.+-|-|. .++||++|+|.-+.--+
T Consensus 86 ~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p 136 (150)
T PF09891_consen 86 PVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIP 136 (150)
T ss_dssp EEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEET
T ss_pred EecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecC
Confidence 667888889999999999999999999999887 69999999998765433
|
; PDB: 3D4R_D. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=87.48 E-value=4.6 Score=46.20 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCc
Q psy15244 718 CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGST 797 (1427)
Q Consensus 718 ~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~ 797 (1427)
-|++..+.|.+.+.+..+..++. |-+ .+-++...+.|++.+.|...- +.|+. .++++.+.|+
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~st----------pfd--~~s~d~l~~~~~~~~KIaS~d--l~n~~-lL~~~A~tgk--- 114 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFST----------PFD--EESVDFLEELGVPAYKIASGD--LTNLP-LLEYIAKTGK--- 114 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEE----------E-S--HHHHHHHHHHT-SEEEE-GGG--TT-HH-HHHHHHTT-S---
T ss_pred CCHHHHHHHHHHHHHcCCEEEEC----------CCC--HHHHHHHHHcCCCEEEecccc--ccCHH-HHHHHHHhCC---
Confidence 44555555555554444444442 222 122566667788888876542 22222 3455666787
Q ss_pred EEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-EccccCcCCHHHHHH--HHHHHHHHcCCceEEEeecCC
Q psy15244 798 IVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC-LKDMAGLLKPTAAKL--LIGSFREKYPNILIHVHTHDM 874 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~-i~Dt~G~l~P~~~~~--lv~~lr~~~p~ipi~~H~Hnd 874 (1427)
..|.-|| ..+++.+.+.++.+.+.|..-|+ +-=+.+.=+|.+-.. .+..||+.+ ++||++=-|..
T Consensus 115 ---PvIlSTG--------~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f-~~~vG~SDHt~ 182 (241)
T PF03102_consen 115 ---PVILSTG--------MSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERF-GVPVGYSDHTD 182 (241)
T ss_dssp ----EEEE-T--------T--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHS-TSEEEEEE-SS
T ss_pred ---cEEEECC--------CCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhc-CCCEEeCCCCC
Confidence 2333443 68999999999999777765444 444556666655444 489999999 59999999988
Q ss_pred cchHHHHHHHHHHhcCCEEE
Q psy15244 875 AGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD 894 (1427)
| ....++|+..||.+|.
T Consensus 183 -g--~~~~~~AvalGA~vIE 199 (241)
T PF03102_consen 183 -G--IEAPIAAVALGARVIE 199 (241)
T ss_dssp -S--SHHHHHHHHTT-SEEE
T ss_pred -C--cHHHHHHHHcCCeEEE
Confidence 4 4557899999999984
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.44 E-value=5.7 Score=44.57 Aligned_cols=68 Identities=31% Similarity=0.303 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.+.+...++++.+.+.|++.|-|. +-+| ...+.|+.+++++|++-|+..+=-|. ..+-.|++|||+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEE
Confidence 678999999999999999999986 5666 57788999999999999999887776 66789999999998
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.39 E-value=3.7 Score=47.66 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV 792 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~ 792 (1427)
++++.+.++++++.+.|++.|++.|+.-- .+.+...+..+++.
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 56666777888888888888888887763 45666666666543
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK09859 multidrug efflux system protein MdtE; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.1 Score=54.89 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=47.1
Q ss_pred EEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.-..|+.++....-+....+++-+ +..|.++.+|+|.++++++|+.|++||+|++|+
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld 93 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQID 93 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEEC
Confidence 4445667776555556667777654 778999999999999999999999999999986
|
|
| >TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) | Back alignment and domain information |
|---|
Probab=87.33 E-value=1.6 Score=53.62 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=48.7
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|...+|.+++||.+ .. |..-..+|-+ .....|.||..|+|.++++
T Consensus 14 eg~i~~w~v~~Gd~V-----------~~-g~~l~~vEtd----------------------K~~~ei~a~~~G~v~~i~~ 59 (403)
T TIGR01347 14 EGTVAEWHKKVGDTV-----------KR-DENIVEIETD----------------------KVVLEVPSPADGVLQEILF 59 (403)
T ss_pred eEEEEEEEeCCcCEe-----------CC-CCEEEEEEEc----------------------ceeeEEecCCCEEEEEEEe
Confidence 577889999999987 22 3322222211 1346789999999999999
Q ss_pred cCCCEEecCCEEEEEEcC
Q psy15244 1374 KVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~ieam 1391 (1427)
++|+.|+.|++|+.|+..
T Consensus 60 ~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 60 KEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCCCEeCCCCEEEEEecC
Confidence 999999999999999864
|
dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=87.26 E-value=18 Score=41.74 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=92.0
Q ss_pred CcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC---CCceeeeecc
Q psy15244 665 TFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP---NIPFQMILRG 741 (1427)
Q Consensus 665 TlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p---~~~~qml~Rg 741 (1427)
.+.||.+ ..+.+..++.|..+-+ .|.+.|++++++|-..+-.--.++.|+|+..+-+.+. +.++..
T Consensus 13 sf~~~~~-----~~~~~~~~~~a~~~~~--~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSI---- 81 (258)
T cd00423 13 SFSDGGK-----FLSLDKALEHARRMVE--EGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISV---- 81 (258)
T ss_pred chhhccc-----cCCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEE----
Confidence 4556543 2567888888888877 7999999998876332211113355677655444432 333322
Q ss_pred cccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC----CCC
Q psy15244 742 NSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK----KKY 817 (1427)
Q Consensus 742 ~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~----~~~ 817 (1427)
..+ .-+.+++|.+.|.+++.=....++= ...++.+++.|. -+ .++...+ .|.. ..|
T Consensus 82 ------DT~----~~~v~~aaL~~g~~iINdis~~~~~---~~~~~l~~~~~~---~v--V~m~~~~--~~~~~~~~~~~ 141 (258)
T cd00423 82 ------DTF----NAEVAEAALKAGADIINDVSGGRGD---PEMAPLAAEYGA---PV--VLMHMDG--TPQTMQNNPYY 141 (258)
T ss_pred ------eCC----cHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHHHHHcCC---CE--EEECcCC--CCcccccCCCc
Confidence 112 2334778888998876655444311 344566777776 22 1222211 1100 001
Q ss_pred ------CHHHHHHHHHHHHHCCCC--EEEEccccCcCC---HHHHHHHHHHH---HHHcCCceE
Q psy15244 818 ------SLNYYEDLAKQLVESGAQ--VLCLKDMAGLLK---PTAAKLLIGSF---REKYPNILI 867 (1427)
Q Consensus 818 ------~~~~~~~~a~~l~~~Gad--~i~i~Dt~G~l~---P~~~~~lv~~l---r~~~p~ipi 867 (1427)
-.+++.+.++.+.++|+. .|.| |. |+.. +..-..+++.+ ++. |+.|+
T Consensus 142 ~~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil-DP-g~g~~k~~~~~~~~l~~i~~~~~~-~g~Pi 202 (258)
T cd00423 142 ADVVDEVVEFLEERVEAATEAGIPPEDIIL-DP-GIGFGKTEEHNLELLRRLDAFREL-PGLPL 202 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eC-CCCccCCHHHHHHHHHHHHHHHhc-CCCcE
Confidence 157888889999999953 4443 53 3332 23333444444 433 56674
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=3.5 Score=48.86 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=52.8
Q ss_pred EEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
||||.| .|.++..+++.+.+.|++++++..+..........--+.+. .++.|.+.+.+..+ ++|+|+-.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~--------~Dl~d~~~l~~al~--g~d~Vi~~ 71 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVY--------GDLSLPETLPPSFK--GVTAIIDA 71 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEE--------CCCCCHHHHHHHHC--CCCEEEEC
Confidence 899999 69999999999999999988886543221100000011111 23456666666554 58887754
Q ss_pred CCcccc--------c----HHHHHHHHHCCC
Q psy15244 138 YGFLSE--------R----EDFAKAVIGAGL 156 (1427)
Q Consensus 138 ~gflsE--------~----~~~a~~~e~~Gi 156 (1427)
.+.... | ..+.++|.+.|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gv 102 (317)
T CHL00194 72 STSRPSDLYNAKQIDWDGKLALIEAAKAAKI 102 (317)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHcCC
Confidence 332111 1 235667777776
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.08 E-value=19 Score=39.74 Aligned_cols=156 Identities=23% Similarity=0.269 Sum_probs=89.7
Q ss_pred cccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 742 NSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 742 ~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
+-+-|-.-+...++-+...+|...|.--+|+- .++|+..++..++ .-. - .|- -.|. |+...+=-.
T Consensus 22 Qal~~~pl~~~~iv~~mA~Aa~~gGAvgiR~~-gv~dIkai~~~v~----vPI-----I-GIi-Krd~--~~s~v~ITp- 86 (229)
T COG3010 22 QALPGEPLDSPEIVAAMALAAEQGGAVGIRIE-GVEDIKAIRAVVD----VPI-----I-GII-KRDY--PDSPVRITP- 86 (229)
T ss_pred ecCCCCCCcchhHHHHHHHHHHhCCcceEeec-chhhHHHHHhhCC----CCe-----E-EEE-ecCC--CCCCceecc-
Confidence 33444444556777777888888999999986 4444443333222 211 1 111 1121 111111112
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHH-HHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPT-AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~-~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
+++=+++|.++|+++|++ |-.=--.|. ...++++. .++|+.-+-..|-+ +.-.+.|.++|+|+|-+|++|.
T Consensus 87 tlkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~~l~MAD~St-----~ee~l~a~~~G~D~IGTTLsGY 158 (229)
T COG3010 87 TLKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPGQLAMADCST-----FEEGLNAHKLGFDIIGTTLSGY 158 (229)
T ss_pred cHHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCCcEEEeccCC-----HHHHHHHHHcCCcEEecccccc
Confidence 344577888999999997 555567777 77778777 23444433333322 4566889999999999999998
Q ss_pred CCCCCCC--cHHHHHHHHHhCC
Q psy15244 901 SGICSQP--AMGTIVSCLENTD 920 (1427)
Q Consensus 901 G~~tgn~--~lE~vv~~L~~~g 920 (1427)
-+-+=+| +--+++..|...|
T Consensus 159 T~~~~~~~~pDf~lvk~l~~~~ 180 (229)
T COG3010 159 TGYTEKPTEPDFQLVKQLSDAG 180 (229)
T ss_pred cCCCCCCCCCcHHHHHHHHhCC
Confidence 6633233 2223444444443
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=2.2 Score=48.41 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHH--HHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTA--AKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~--~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.|+..+.+-++++.+.|+|.+-+==|=|...|.- -.+.+++||+..|++++.+|.|-+..... .-.+.++|||+|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~--i~~~~~~Gad~i- 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKW--VDDFAKAGASQF- 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHH--HHHHHHcCCCEE-
Confidence 5667788899999999999755433448888863 34688999988889999999993332222 256778999998
Q ss_pred eccccCCCCCCCCc-HHHHHHHHHhCCCCCCCCh
Q psy15244 895 VAADSMSGICSQPA-MGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 895 ~av~GmG~~tgn~~-lE~vv~~L~~~g~~tgidl 927 (1427)
|+-.-+ ... +...+..++..|...|+.+
T Consensus 93 -tvH~ea----~~~~~~~~l~~ik~~G~~~gval 121 (228)
T PTZ00170 93 -TFHIEA----TEDDPKAVARKIREAGMKVGVAI 121 (228)
T ss_pred -EEeccC----CchHHHHHHHHHHHCCCeEEEEE
Confidence 443322 123 5677888887776665544
|
|
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.91 E-value=13 Score=43.40 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=105.2
Q ss_pred EEEEEEEeeccCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccccCcCCH------HHHH---HHHHHHHHHcCCceE
Q psy15244 798 IVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP------TAAK---LLIGSFREKYPNILI 867 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~-~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P------~~~~---~lv~~lr~~~p~ipi 867 (1427)
++.+.+..|-|=+ -|.++ .+.+..++-++++.+.|||+|-|.=-..--.+ +++. ..|++|++. +++|
T Consensus 3 ~iMGIlNvTPDSF-sDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~I 79 (279)
T PRK13753 3 TVFGILNLTEDSF-FDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRV 79 (279)
T ss_pred eEEEEEeCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcE
Confidence 3445555554411 13455 48899999999999999999977532221111 2455 566666654 4677
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH------h-CCCC------CCCCh-hhHHHH
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE------N-TDKR------CGIDL-HDVCDY 933 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~------~-~g~~------tgidl-~~L~~l 933 (1427)
.+ ||+-- ..+.+|+++||++|+-- +|+ . .|.+..+++... + .|.. ...+. .-+.++
T Consensus 80 SI---DT~~~--~va~~al~aGadiINDV-sg~---~-d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev 149 (279)
T PRK13753 80 SI---DSFQP--ETQRYALKRGVGYLNDI-QGF---P-DPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEI 149 (279)
T ss_pred EE---ECCCH--HHHHHHHHcCCCEEEeC-CCC---C-chHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHH
Confidence 77 44443 34468999999997643 332 3 566666555431 1 1110 11111 123445
Q ss_pred HHHHH----HHhCCCCCCCC----cccccchhhhhHHHHHHHHHHhhhhcC-CCCCCCCCcCcccEEEecCCC
Q psy15244 934 SSYWR----KVRELYAPAHN----LLWRCGIDLHDVCDYSSYWRKVRELYA-PFECTDLKAASSEAYLYEIPG 997 (1427)
Q Consensus 934 ~~~v~----~~~g~~~~~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~-~f~~~~~~g~~~~v~~~~~pG 997 (1427)
..+++ .....-++.++ |-+| .+..+...++-.+.+.-..+. .|..|-+.|.++.-+++++-|
T Consensus 150 ~~~l~~~i~~~~~~Gi~~~~IilDPGiG--F~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig~~~~ 220 (279)
T PRK13753 150 VRFFEARVSALRRSGVAADRLILDPGMG--FFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVG 220 (279)
T ss_pred HHHHHHHHHHHHHcCCChhhEEEeCCCC--CCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHHHHcC
Confidence 55443 45555566666 5445 222334455656666655565 366677788888877776654
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=86.81 E-value=20 Score=42.33 Aligned_cols=129 Identities=16% Similarity=0.271 Sum_probs=82.1
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCC-ceeeeecccccccccCCCcchH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNI-PFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~-~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.++.+++..+++.+.. .|+..|-+.||-- +++.+-.+-++.+++. +. .+.+..-|. ..
T Consensus 39 ~ls~eei~~~i~~~~~--~gi~~I~~tGGEP------ll~~~l~~iv~~l~~~--g~~~v~i~TNG~-----------ll 97 (302)
T TIGR02668 39 ELSPEEIERIVRVASE--FGVRKVKITGGEP------LLRKDLIEIIRRIKDY--GIKDVSMTTNGI-----------LL 97 (302)
T ss_pred cCCHHHHHHHHHHHHH--cCCCEEEEECccc------ccccCHHHHHHHHHhC--CCceEEEEcCch-----------HH
Confidence 4889999999988877 6999988877753 4555555555666553 22 344433221 12
Q ss_pred HHHHHHHHhcCCCEEEEe-ccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVF-DPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif-~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...+.|++.+.|. ++++ .++.+...++.++++|.. .+...+... + ..+.+.+.
T Consensus 98 ~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~--~v~i~~v~~-----~---g~n~~ei~ 167 (302)
T TIGR02668 98 EKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLT--PVKLNMVVL-----K---GINDNEIP 167 (302)
T ss_pred HHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCC--cEEEEEEEe-----C---CCCHHHHH
Confidence 345667778999988874 4443 245666777888888761 133322222 1 15677788
Q ss_pred HHHHHHHHCCCCE
Q psy15244 824 DLAKQLVESGAQV 836 (1427)
Q Consensus 824 ~~a~~l~~~Gad~ 836 (1427)
++++.+.+.|++.
T Consensus 168 ~~~~~~~~~g~~~ 180 (302)
T TIGR02668 168 DMVEFAAEGGAIL 180 (302)
T ss_pred HHHHHHHhcCCEE
Confidence 8888888888874
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.78 E-value=11 Score=44.10 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~ 823 (1427)
.+.|.+|+++|.+.+-+=-|.-++ +.-++.++.|+..|. .+|+-|-..+ +.++. ..++++...
T Consensus 87 ~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv---~VEaElG~vg--g~e~~~~~~~~~~~~T~peea~ 161 (284)
T PRK09195 87 FDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDV---SVEAELGRLG--GQEDDLQVDEADALYTDPAQAR 161 (284)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeccc--CcccCcccccccccCCCHHHHH
Confidence 356999999999887554444433 345678889999998 7887766554 12221 134666666
Q ss_pred HHHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 824 DLAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++++ +.|+|.+.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|+.-.....|++.|+.-|+...
T Consensus 162 ~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~-~vPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 162 EFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV-NIPLVLHG--ASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred HHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh-CCCeEEec--CCCCCHHHHHHHHHcCCeEEEeCc
Confidence 6555 56999776642 22332 3555567888899888 89987765 568888999999999999987753
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=86.76 E-value=21 Score=43.39 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+.+.++.+|+.+.+ .|+..+=. |-+-|.- +.| ..-+++.++.|++......+..+.. +-+...
T Consensus 130 ~~~~~~~~A~~lk~--~g~~~~r~~~~kpRtsp--~~f-~g~~~e~l~~L~~~~~~~Gl~~~t~----------v~d~~~ 194 (360)
T PRK12595 130 SYEQVEAVAKALKA--KGLKLLRGGAFKPRTSP--YDF-QGLGVEGLKILKQVADEYGLAVISE----------IVNPAD 194 (360)
T ss_pred CHHHHHHHHHHHHH--cCCcEEEccccCCCCCC--ccc-cCCCHHHHHHHHHHHHHcCCCEEEe----------eCCHHH
Confidence 56889999999988 67655432 1111111 112 2234677777777665554444432 223222
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC-CCHHHHHHHHHHHHHCCCC
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK-YSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~-~~~~~~~~~a~~l~~~Gad 835 (1427)
++.+.+. +|++.|-... +.|. ..++++.+.|+ -+ +--+| - .+++.+...++.+.+.|.+
T Consensus 195 --~~~l~~~-vd~lkI~s~~--~~n~-~LL~~~a~~gk---PV---ilk~G--------~~~t~~e~~~Ave~i~~~Gn~ 254 (360)
T PRK12595 195 --VEVALDY-VDVIQIGARN--MQNF-ELLKAAGRVNK---PV---LLKRG--------LSATIEEFIYAAEYIMSQGNG 254 (360)
T ss_pred --HHHHHHh-CCeEEECccc--ccCH-HHHHHHHccCC---cE---EEeCC--------CCCCHHHHHHHHHHHHHCCCC
Confidence 7777777 8888775543 3332 34555666677 22 22222 3 6899999999999999998
Q ss_pred EEEEcc--ccCcCCH--HH-HHHHHHHHHHHcCCceEEE-eecCCcc---hHHHHHHHHHHhcCC--EEEeccccCCCCC
Q psy15244 836 VLCLKD--MAGLLKP--TA-AKLLIGSFREKYPNILIHV-HTHDMAG---TGVATTLACVKAGAD--IVDVAADSMSGIC 904 (1427)
Q Consensus 836 ~i~i~D--t~G~l~P--~~-~~~lv~~lr~~~p~ipi~~-H~Hnd~G---lA~An~laAi~AGad--~VD~av~GmG~~t 904 (1427)
.|.|+. +...-+| .. =-.-+..||+.+ ++||++ =.|- .| +....+++|+.+||| +|+.=.+
T Consensus 255 ~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~d------ 326 (360)
T PRK12595 255 QIILCERGIRTYEKATRNTLDISAVPILKQET-HLPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHPD------ 326 (360)
T ss_pred CEEEECCccCCCCCCCCCCcCHHHHHHHHHHh-CCCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecCC------
Confidence 889987 1111111 11 122366788887 899999 4554 55 667789999999997 6665542
Q ss_pred CCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHH
Q psy15244 905 SQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKV 940 (1427)
Q Consensus 905 gn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~ 940 (1427)
|.. ........++++.|.++.+.+.++
T Consensus 327 --p~~-------a~~D~~~sl~p~el~~l~~~i~~~ 353 (360)
T PRK12595 327 --PAV-------ALSDSAQQMDIPEFDRFLDELKPL 353 (360)
T ss_pred --CCC-------CCCchhhhCCHHHHHHHHHHHHHH
Confidence 221 111222456776666666655544
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.75 E-value=6.4 Score=46.31 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE----------ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCL----------KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i----------~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
.+.+.+.+.++.+.++|+|.|-| .|..| -.|..+.++++++|+.+ ++||.+-.--+..-...-+.++.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~ 176 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAE 176 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHH
Confidence 44666777777777777776655 12222 57899999999999998 88988876544333344455678
Q ss_pred HhcCCEEEe
Q psy15244 887 KAGADIVDV 895 (1427)
Q Consensus 887 ~AGad~VD~ 895 (1427)
++|||.|+.
T Consensus 177 ~~G~d~i~~ 185 (296)
T cd04740 177 EAGADGLTL 185 (296)
T ss_pred HcCCCEEEE
Confidence 899998855
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria | Back alignment and domain information |
|---|
Probab=86.56 E-value=0.56 Score=48.47 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=0.0
Q ss_pred ceecCCCeEEEEEE-ecCCCEEec--CCEEEEEEcCCceeeeecCCCeEEE-----------------------------
Q psy15244 1359 EIGAPMPGNIIEVK-VKVGQQVKK--NDVLIVMSVMKTETLIHASADGVVK----------------------------- 1406 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~-V~~Gd~V~~--G~~l~~ieamKme~~i~Ap~~G~V~----------------------------- 1406 (1427)
.|.||+.|+++.+. |.+.---++ |+-+++.-+-. .|.||++|+|.
T Consensus 4 ~i~aPv~G~vi~l~~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~ 80 (132)
T PF00358_consen 4 TIYAPVSGKVIPLEEVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVK 80 (132)
T ss_dssp EEE-SSSEEEEEGGGSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGG
T ss_pred EEEeeCCcEEEEhhhCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhh
Q ss_pred ------EEEecCCCeeCCCCEEEEEe
Q psy15244 1407 ------EIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1407 ------~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+.+|++||.|.+||+|+++.
T Consensus 81 L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 81 LNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp GTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred cCCcceEEEEeCCCEEECCCEEEEEc
|
The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F .... |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=86.44 E-value=33 Score=39.77 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=110.0
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHH----HHHHhCCCCcee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLA----ELRELIPNIPFQ 736 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~----~lr~~~p~~~~q 736 (1427)
+|--+|=||.+ .++.++.++.|..+-+ .|.+.|++|+.+|-..+-.--.+..|+|+. .+++.. +.++.
T Consensus 9 ~tpdSF~dg~~-----~~~~~~~~~~a~~~~~--~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plS 80 (257)
T cd00739 9 VTPDSFSDGGR-----FLSLDKAVAHAEKMIA--EGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLIS 80 (257)
T ss_pred CCCCCCCCCCC-----CCCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEE
Confidence 44445667764 3677889999988877 799999998755511110011233466653 333322 34332
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC-
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK- 815 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~- 815 (1427)
. ..+ .-+.+++|.+.|.+++.=....++- ...++.+++.|. -+. ++... +.|...
T Consensus 81 I----------DT~----~~~v~e~al~~G~~iINdisg~~~~---~~~~~l~~~~~~---~vV--~m~~~--g~p~~~~ 136 (257)
T cd00739 81 V----------DTF----RAEVARAALEAGADIINDVSGGSDD---PAMLEVAAEYGA---PLV--LMHMR--GTPKTMQ 136 (257)
T ss_pred E----------eCC----CHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHHHHHcCC---CEE--EECCC--CCCcccc
Confidence 2 112 2334778888899987744443311 344556667776 222 12221 233110
Q ss_pred ---CC------CHHHHHHHHHHHHHCCCC--EEEEcccc-CcCC-HHHHHHHHHHHHH--HcCCceE--EE---------
Q psy15244 816 ---KY------SLNYYEDLAKQLVESGAQ--VLCLKDMA-GLLK-PTAAKLLIGSFRE--KYPNILI--HV--------- 869 (1427)
Q Consensus 816 ---~~------~~~~~~~~a~~l~~~Gad--~i~i~Dt~-G~l~-P~~~~~lv~~lr~--~~p~ipi--~~--------- 869 (1427)
.| -.+++.+.++.+.++|+. .|.+ |-. |..+ +.+-.++++.++. ++ +.|+ ++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~gf~ks~~~~~~~l~~i~~l~~~-~~pil~G~SrkSfig~~ 214 (257)
T cd00739 137 ENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGIGFGKTPEHNLELLRRLDELKQL-GLPVLVGASRKSFIGAL 214 (257)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCCCcccCHHHHHHHHHHHHHHHhC-CCcEEEEecccHHHHHh
Confidence 01 235677777888899985 5443 542 4332 4455555555542 23 4553 22
Q ss_pred ---eecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 870 ---HTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 870 ---H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
..++..+..++.+..|++.||+++=+
T Consensus 215 ~~~~~~~r~~~t~~~~~~~~~~Ga~iiRv 243 (257)
T cd00739 215 LGREPKDRDWGTLALSALAAANGADIVRV 243 (257)
T ss_pred cCCCccccchhHHHHHHHHHHcCCCEEEe
Confidence 23455566667777788889888743
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.43 E-value=2.6 Score=46.75 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceE--EEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILI--HVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi--~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.++.+...++++.+ +-|++.|-+ +.-+.+|. ..+.++.||+.+|+..+ ++|++ |-|. -..-+++++|||+|
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~-g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNE-GIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHh-CHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCCEE
Confidence 47889999999999 778887665 32344444 46789999998875554 55555 3332 24577899999998
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
- +.+.. ++..+++++...+..|...++++
T Consensus 81 ~--vh~~~---~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 81 T--VLGVA---DDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred E--EeccC---CHHHHHHHHHHHHHcCCEEEEEe
Confidence 4 33332 22346788888888887766543
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.42 E-value=17 Score=40.56 Aligned_cols=173 Identities=21% Similarity=0.182 Sum_probs=115.0
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
..+.++.+.+++.+.+ .++.||+|-+-. ...=.+.++.||+..|+..+-.=+.-. |.=.
T Consensus 12 ~~~l~~Ai~~a~~v~~---~~diiEvGTpLi--------k~eG~~aV~~lr~~~pd~~IvAD~Kt~----------D~G~ 70 (217)
T COG0269 12 LLDLEEAIEIAEEVAD---YVDIIEVGTPLI--------KAEGMRAVRALRELFPDKIIVADLKTA----------DAGA 70 (217)
T ss_pred ccCHHHHHHHHHHhhh---cceEEEeCcHHH--------HHhhHHHHHHHHHHCCCCeEEeeeeec----------chhH
Confidence 3677888999999887 499999985421 111236688999999987754433211 1223
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
-.++.|.++|.|++-|.. +.+...++.+++.+++.|+ .+..-+ .+ ..| ..+.++.+.++|+|.
T Consensus 71 ~e~~ma~~aGAd~~tV~g-~A~~~TI~~~i~~A~~~~~---~v~iDl--~~--------~~~---~~~~~~~l~~~gvd~ 133 (217)
T COG0269 71 IEARMAFEAGADWVTVLG-AADDATIKKAIKVAKEYGK---EVQIDL--IG--------VWD---PEQRAKWLKELGVDQ 133 (217)
T ss_pred HHHHHHHHcCCCEEEEEe-cCCHHHHHHHHHHHHHcCC---eEEEEe--ec--------CCC---HHHHHHHHHHhCCCE
Confidence 458899999999988765 4578889999999999998 655432 21 122 335667777799998
Q ss_pred EEEc-----cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 837 LCLK-----DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 837 i~i~-----Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
+.+= =++|.--+..--..++.+.+. +..+.+ +-|...-+.-.....|+++|
T Consensus 134 ~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAV----aGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 134 VILHRGRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAV----AGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred EEEEecccHhhcCCCccHHHHHHHHHhhcc--CceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence 7762 234544333333333333322 245544 45888899999999999887
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.32 E-value=3 Score=56.68 Aligned_cols=169 Identities=14% Similarity=0.054 Sum_probs=101.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcC-CE------------EEEEec-CCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMG-IK------------SVGIYS-EQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elG-i~------------~vav~s-~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
..++||||+|.|-++..+++.+.+.+ ++ .++|.+ +... ...+++..-.+ ....-++.|.+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~---a~~la~~~~~~---~~v~lDv~D~e 640 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD---AKETVEGIENA---EAVQLDVSDSE 640 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH---HHHHHHhcCCC---ceEEeecCCHH
Confidence 34789999999999999999998753 33 233322 2211 11122211000 00112367788
Q ss_pred HHHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH-
Q psy15244 121 EIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK- 199 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee- 199 (1427)
.+.++++. +|+|+....+ .-+..++.+|.++|..++--+...- +-..+.+.++++|+....+. +.--..+.
T Consensus 641 ~L~~~v~~--~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~----e~~~L~e~Ak~AGV~~m~e~-GlDPGid~~ 712 (1042)
T PLN02819 641 SLLKYVSQ--VDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSE----EMSALDSKAKEAGITILCEM-GLDPGIDHM 712 (1042)
T ss_pred HHHHhhcC--CCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHH----HHHHHHHHHHHcCCEEEECC-ccCHHHHHH
Confidence 88887775 8999877443 2457899999999999875542211 22456788899999987765 22223344
Q ss_pred -HHHHHHhc----CCcEEEeecCCC--------CCcCeEEecCHHHHHHHH
Q psy15244 200 -VKEFCDEV----EFPVILKAAFGG--------GGRGMRMVANKDAIEENF 237 (1427)
Q Consensus 200 -a~~~a~~i----GyPvVVKP~~Gg--------GGrGV~iV~s~eeL~~a~ 237 (1427)
+.+.+++. |-...++...|| .--+-.+-.|++.+..++
T Consensus 713 lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~ 763 (1042)
T PLN02819 713 MAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAG 763 (1042)
T ss_pred HHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHh
Confidence 44455544 666666666655 223444556666655544
|
|
| >TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component | Back alignment and domain information |
|---|
Probab=86.24 E-value=2 Score=55.59 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEc--CC-----ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSV--MK-----TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~iea--mK-----me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
-+.|+-.+.+|++||+|++||+|+...- .| +.+.|.-.-......+....+..++.||.++.+
T Consensus 540 ~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 540 ELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred ccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 4667777899999999999999998753 22 344444333344445556667788999987764
|
This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=86.22 E-value=6.7 Score=45.23 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCccEEeccCCCchhhhhhcccc--ChH----HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 685 KVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE--CPW----ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 685 ~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e--~p~----erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
.-|+.+++ +|++.|=++.+ .--+.+.+-+- -.+ ...+.+++..+. -+++--...-+|.+-++++++..
T Consensus 23 ~sA~l~e~--aG~d~i~vGds-~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~---p~viaD~~fg~y~~~~~~av~~a 96 (254)
T cd06557 23 PTAKLADE--AGVDVILVGDS-LGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPR---ALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred HHHHHHHH--cCCCEEEECHH-HHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCC---CeEEEeCCCCcccCCHHHHHHHH
Confidence 45666777 79999854322 11112222111 112 223334443332 22221111234666677777766
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEE-------eeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATIC-------YAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~-------~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
++...++|++.+.|=+. ..+...|+++.++|. -+.+.|- +.+++.-..++....+.+++-++.+.+
T Consensus 97 ~r~~~~aGa~aVkiEd~----~~~~~~I~al~~agi---pV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~ 169 (254)
T cd06557 97 ARLMKEAGADAVKLEGG----AEVAETIRALVDAGI---PVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEE 169 (254)
T ss_pred HHHHHHhCCeEEEEcCc----HHHHHHHHHHHHcCC---CeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHH
Confidence 77777799999999887 356677888888886 2221111 111111111112226788899999999
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCce
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNIL 866 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ip 866 (1427)
+||+.|.+- +.|. ++.+.+.+++ ++|
T Consensus 170 AGA~~i~lE-----~v~~---~~~~~i~~~v-~iP 195 (254)
T cd06557 170 AGAFALVLE-----CVPA---ELAKEITEAL-SIP 195 (254)
T ss_pred CCCCEEEEc-----CCCH---HHHHHHHHhC-CCC
Confidence 999999986 2243 3666666776 466
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=0.83 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=31.4
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|.++.+|+|.+++|++||.|++||+|+.|+
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld 80 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRID 80 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEEC
Confidence 678999999999999999999999999999986
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=17 Score=42.70 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~a 826 (1427)
+.+.+|.+.|.+.+-+=.|--++ +.-++.++.|+..|. .||+-|-..+. .++. .-++++...+++
T Consensus 91 e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv---~VEaElG~igg--~ed~~~~~~~~yT~peeA~~Fv 165 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNV---SVEAELGTVGG--QEDDVIAEGVIYADPAECKHLV 165 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeccCC--ccCCcccccccCCCHHHHHHHH
Confidence 45889999999887655444443 455788999999999 88888776642 2221 124676666655
Q ss_pred HHHHHCCCCEEEEc--cccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 827 KQLVESGAQVLCLK--DMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~--Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ .|+|.+.++ -.=|.- .|.--.++++.+++.+ ++||.+|. .+|+.-.....|+..|+.-|+...
T Consensus 166 ~~---TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~-~iPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 166 EA---TGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT-GVPLVLHG--GTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred HH---hCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH-CCCEEEeC--CCCCCHHHHHHHHHcCCeEEEeCh
Confidence 44 599977763 122221 3555567888899988 89987765 578888999999999999997653
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=86.08 E-value=16 Score=49.12 Aligned_cols=78 Identities=23% Similarity=0.368 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCc---CCHHHHHHHHHHHHHHcCCceEEE-------eecCCcchHHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGL---LKPTAAKLLIGSFREKYPNILIHV-------HTHDMAGTGVATTLAC 885 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lr~~~p~ipi~~-------H~Hnd~GlA~An~laA 885 (1427)
..+++.+++.++++.+.|+..|+|. .|. +....+.++++++|+++|++.||. |.=..+|+.+.-++..
T Consensus 556 ~Ls~eeI~~~a~ea~~~G~tev~i~--gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~ 633 (843)
T PRK09234 556 TLSLDEVADRAWEAWVAGATEVCMQ--GGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTA 633 (843)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe--cCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHH
Confidence 4689999999999999999999998 353 233567788999999987554431 2235678888888755
Q ss_pred H-HhcCCEEEe
Q psy15244 886 V-KAGADIVDV 895 (1427)
Q Consensus 886 i-~AGad~VD~ 895 (1427)
+ +||++.+..
T Consensus 634 LkeAGLds~pg 644 (843)
T PRK09234 634 LREAGLDTIPG 644 (843)
T ss_pred HHHhCcCccCC
Confidence 5 689988863
|
|
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
Probab=86.05 E-value=38 Score=38.69 Aligned_cols=199 Identities=12% Similarity=0.024 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccc--c---ccCCCc----
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLV--G---YSNYSP---- 752 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~v--g---y~~~~~---- 752 (1427)
+..++.+.+.+ .|++.||+|.+. +..++.++.+.+. .+..+.++.-..+.. + +...|+
T Consensus 15 ~l~e~~~~~~e--~G~~~vEl~~~~----------~~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T TIGR03234 15 PFLERFAAAAQ--AGFTGVEYLFPY----------DWDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEE 81 (254)
T ss_pred CHHHHHHHHHH--cCCCEEEecCCc----------cCCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHH
Confidence 34455666667 799999998531 1123444433321 233333332111100 0 001122
Q ss_pred --chHHHHHHHHHhcCCCEEEEeccCC-----hH-------HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCC
Q psy15244 753 --AEVGAFCRLASQAGIDIFRVFDPLN-----SV-------PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYS 818 (1427)
Q Consensus 753 --nvv~~~v~~a~~~Gid~~rif~~~n-----d~-------~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~ 818 (1427)
+-.+..++.|.+.|...+++..... .- +.|+..++.|++.|. .+ ++.....+..|...-.+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi---~l--~lE~~~~~~~~~~~l~t 156 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL---TL--LIEPINSFDMPGFFLTT 156 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---EE--EEEECCcccCCCChhcC
Confidence 2344577788888999888764422 11 256777778888887 32 22211111122111245
Q ss_pred HHHHHHHHHHHHHCCCCEE-EEccccCcCCH-HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 819 LNYYEDLAKQLVESGAQVL-CLKDMAGLLKP-TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i-~i~Dt~G~l~P-~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+...++++++ +-+.+ ..-|+.-...- ....++++.+. +--.|+|..|+.|.
T Consensus 157 ~~~~~~li~~v---~~~~~~i~~D~~h~~~~~e~~~~~i~~~~----~~i~~vHi~D~~~~------------------- 210 (254)
T TIGR03234 157 TEQALAVIDDV---GRENLKLQYDLYHMQRMGGDLARTLAAYA----AHIGHVQIADNPGR------------------- 210 (254)
T ss_pred HHHHHHHHHHh---CCCCEeEeeehhhhhhhCCCHHHHHHHhh----ccEeEEEeCCCCCC-------------------
Confidence 56666655554 33333 33465433211 11223333332 34468888875321
Q ss_pred cccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 897 ADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 897 v~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
... +.|.-+...++..|+..|++--+.+
T Consensus 211 -~~~--G~G~id~~~il~~L~~~gy~g~~~~ 238 (254)
T TIGR03234 211 -HEP--GTGEINYRFLFAVLDRLGYDGWVGL 238 (254)
T ss_pred -CCC--CCCccCHHHHHHHHHHCCCCceEEE
Confidence 012 3578899999999999887754444
|
This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA. |
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=86.00 E-value=77 Score=37.93 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=118.8
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcc----c----cChHHHHHHHHHhCC-CCceeeeecccccc
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFL----K----ECPWERLAELRELIP-NIPFQMILRGNSLV 745 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl----~----e~p~erl~~lr~~~p-~~~~qml~Rg~n~v 745 (1427)
+..++.+++++.++.+.+ .|+..+-+-+|-..+..+..+ . ..+.+.+..+.+.+. .+.+.. .
T Consensus 32 ~~~l~~eeI~~~a~~~~~--~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~~~---~---- 102 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAA--AGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGLLP---H---- 102 (322)
T ss_pred cccCCHHHHHHHHHHHHH--CCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCCcc---c----
Confidence 357899999999999888 699988777665433321110 0 012233322222221 111100 0
Q ss_pred cccCCCcchHHHHHHHHHhcCCCEEEEe----------------ccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccC
Q psy15244 746 GYSNYSPAEVGAFCRLASQAGIDIFRVF----------------DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDL 809 (1427)
Q Consensus 746 gy~~~~~nvv~~~v~~a~~~Gid~~rif----------------~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~ 809 (1427)
-.+..+-.+.++..+++|++. .+. .+-.+...-...++.+++.|+ .+..++.|. +
T Consensus 103 ---~~~g~lt~e~l~~Lk~aG~~~-~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi---~~~s~~i~G--~ 173 (322)
T TIGR03550 103 ---TNPGVMSRDELARLKPVNASM-GLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKI---PFTTGILIG--I 173 (322)
T ss_pred ---cCCCCCCHHHHHHHHhhCCCC-CcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCC---CccceeeEe--C
Confidence 011222344466666666442 111 111112344677889999999 666666654 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-----CCEEEE------cccc----CcCCHHHHHHHHHHHHHHcC-CceEEEeecC
Q psy15244 810 TNPNKKKYSLNYYEDLAKQLVESG-----AQVLCL------KDMA----GLLKPTAAKLLIGSFREKYP-NILIHVHTHD 873 (1427)
Q Consensus 810 ~~p~~~~~~~~~~~~~a~~l~~~G-----ad~i~i------~Dt~----G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hn 873 (1427)
.-+.+..++.+..+.+.+ ++.+.+ +.|- ..+.+.+...++...|=.+| ...|-.-.
T Consensus 174 ------gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~-- 245 (322)
T TIGR03550 174 ------GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP-- 245 (322)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC--
Confidence 135555555555544432 543221 2342 23567777777777776664 33333322
Q ss_pred CcchHHHHHHHHHHhcCCEEEeccc--cCCCC-CCC-CcHHHHHHHHHhCCCCC
Q psy15244 874 MAGTGVATTLACVKAGADIVDVAAD--SMSGI-CSQ-PAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 874 d~GlA~An~laAi~AGad~VD~av~--GmG~~-tgn-~~lE~vv~~L~~~g~~t 923 (1427)
.+|.- ....|+.+||+-+++|+. +-.+. .+. .+.++++.+++..|+.+
T Consensus 246 ~l~~~--~~~~~L~~Gand~~gt~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~p 297 (322)
T TIGR03550 246 NLNRE--DYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAGFTL 297 (322)
T ss_pred ccChH--HHHHHHhcCCccccCcccCchhhcCCCCCCCCHHHHHHHHHHcCCCc
Confidence 33311 357789999999999954 32221 222 47889999998877654
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=85.81 E-value=20 Score=41.58 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc------ChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 683 LKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE------CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 683 ~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e------~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
--.-|..+++ +|++.|=++... --+.+.+-+. +-....+.+++..++.. +.--...-+|.. ++..++
T Consensus 24 D~~sA~i~~~--aG~d~ilvGdSl-gm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~---vv~DmPf~sy~~-~e~a~~ 96 (263)
T TIGR00222 24 DYSFAKLFAD--AGVDVILVGDSL-GMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCL---IVTDLPFMSYAT-PEQALK 96 (263)
T ss_pred CHHHHHHHHH--cCCCEEEECccH-hHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCce---EEeCCCcCCCCC-HHHHHH
Confidence 3456777888 799998775321 1122222111 11223345555545433 222223346764 666666
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEE-------EEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEAT-------ICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~-------i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
.-.+...+.|++.+.|=+. ..+...++.+.+.|. -|.+. ....++|.-..++....+.+++-++++
T Consensus 97 na~rl~~eaGa~aVkiEgg----~~~~~~i~~l~~~gI---pV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~ 169 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG----EWLVETVQMLTERGV---PVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALAL 169 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc----HhHHHHHHHHHHCCC---CEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHH
Confidence 5555555699999999987 334556688888888 33311 111122222222223456888999999
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCce
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNIL 866 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ip 866 (1427)
+++||+.|.+- +.|. ++.+.+.+++ ++|
T Consensus 170 e~AGA~~ivlE-----~vp~---~~a~~It~~l-~iP 197 (263)
T TIGR00222 170 EEAGAQLLVLE-----CVPV---ELAAKITEAL-AIP 197 (263)
T ss_pred HHcCCCEEEEc-----CCcH---HHHHHHHHhC-CCC
Confidence 99999999986 3442 4555666666 466
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK15136 multidrug efflux system protein EmrA; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=0.91 Score=55.66 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=31.6
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|.++++|+|.+++|++||.|++||+|++|+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD 93 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLD 93 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEEC
Confidence 778999999999999999999999999999986
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=85.72 E-value=14 Score=44.30 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=109.9
Q ss_pred cCHHHHHHHHHHHHhhcCCccE-EeccCCCchhhhhhccccChH-HHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYS-LEMWGGAVSHTCLKFLKECPW-ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~-iE~~ggatfd~~~rfl~e~p~-erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
+..+.+..|.++-.+ .+-.. |++..+ .++|+.-..+ ..++.+.+..+.+|+.+.+ .+..+
T Consensus 24 ~n~e~~~aii~AAEe--~~sPvIlq~s~~-----~~~~~g~~~~~~~~~~~ae~~~~VPValHL--------DHg~~--- 85 (347)
T TIGR01521 24 NNMEQMRAIMEAADK--TDSPVILQASRG-----ARSYAGAPFLRHLILAAIEEYPHIPVVMHQ--------DHGNS--- 85 (347)
T ss_pred CCHHHHHHHHHHHHH--hCCCEEEECCcc-----hhhhCCHHHHHHHHHHHHHhCCCCcEEEEC--------CCCCC---
Confidence 344555555555555 34433 444332 2334332222 2334455555556666543 22222
Q ss_pred HHHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-----CC------
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-----PN------ 813 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-----p~------ 813 (1427)
.+.|.+|+++|.+.+-+=.|.- +++.-++.+++|+..|. .||+-|-..+..-. .+
T Consensus 86 ~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv---sVEaELG~igg~e~~~~g~~d~~~~~~ 162 (347)
T TIGR01521 86 PATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGA---SVEGELGCLGSLETGMGEAEDGHGFEG 162 (347)
T ss_pred HHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEeeecccccccccccccCccccc
Confidence 2468999999998876554432 34455678899999999 78887766531100 01
Q ss_pred -----CCCCCHHHHHHHHHHHHHCCCCEEEEc--cccCcCC----HH---HHHHHHHHHHHHcCCceEEEeecCCcc---
Q psy15244 814 -----KKKYSLNYYEDLAKQLVESGAQVLCLK--DMAGLLK----PT---AAKLLIGSFREKYPNILIHVHTHDMAG--- 876 (1427)
Q Consensus 814 -----~~~~~~~~~~~~a~~l~~~Gad~i~i~--Dt~G~l~----P~---~~~~lv~~lr~~~p~ipi~~H~Hnd~G--- 876 (1427)
...++++...++++ +.|+|.+.++ =.=|.-+ |. --.++++.++++++++||.+|.=....
T Consensus 163 ~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~ 239 (347)
T TIGR01521 163 VLDHSQLLTDPEEAADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEW 239 (347)
T ss_pred ccchhhcCCCHHHHHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHh
Confidence 11345555555444 4588876654 2334432 42 335567889888867998888654322
Q ss_pred ----------------hHHHHHHHHHHhcCCEEEec
Q psy15244 877 ----------------TGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 877 ----------------lA~An~laAi~AGad~VD~a 896 (1427)
.-......|++.|+.-|+..
T Consensus 240 ~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 240 LDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred hHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeC
Confidence 22567777777777777654
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=18 Score=44.02 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHH-HHHHHHHHhcCCEE
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGV-ATTLACVKAGADIV 893 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~-An~laAi~AGad~V 893 (1427)
-+..+.-.+-++++.+.|.+.+.|.-.+..-......++|..++..+| +.|.++ +|.|. .+.+.++..|+|.+
T Consensus 191 g~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl-----~Gvg~P~~i~~~v~~GvD~F 265 (366)
T PRK00112 191 GVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYL-----MGVGTPEDLVEGVARGVDMF 265 (366)
T ss_pred CccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEe-----cCCCCHHHHHHHHHcCCCEE
Confidence 467777788899999999999999886544577888999999998886 788666 34444 68899999999999
Q ss_pred EeccccCCCCCCCC
Q psy15244 894 DVAADSMSGICSQP 907 (1427)
Q Consensus 894 D~av~GmG~~tgn~ 907 (1427)
|++.--.-.+-|.+
T Consensus 266 D~~~p~r~Ar~G~a 279 (366)
T PRK00112 266 DCVMPTRNARNGTL 279 (366)
T ss_pred eeCCccccccCCce
Confidence 99987777766654
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=85.65 E-value=23 Score=40.69 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=106.3
Q ss_pred HHHHHHhhcCCccEEeccCCCchhhhhhccc--cChHHH-HHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHH
Q psy15244 686 VSPFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPWER-LAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLA 762 (1427)
Q Consensus 686 ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~er-l~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a 762 (1427)
-|+.+++ .|++.|=++|.+. -.++.+-+ .-+++. +..++...+.+.+-+..=+ -.||.+. ++ +.+.+++.
T Consensus 21 sA~~~e~--~G~~ai~~s~~~~-~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~--~~G~g~~-~~-~~~~v~~~ 93 (243)
T cd00377 21 SARLAER--AGFKAIYTSGAGV-AASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADA--DTGYGNA-LN-VARTVREL 93 (243)
T ss_pred HHHHHHH--cCCCEEEeccHHH-HHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEc--CCCCCCH-HH-HHHHHHHH
Confidence 3455666 6999887765332 22222222 223433 3344443343333333323 2467643 45 44558888
Q ss_pred HhcCCCEEEEeccCC-------------hHHHHHHHHHHHHHhcCCCcE-EEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 763 SQAGIDIFRVFDPLN-------------SVPNLVKGMDAVQQVTGGSTI-VEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 763 ~~~Gid~~rif~~~n-------------d~~~~~~~i~~a~~~G~~~~~-v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
.+.|++.+.|=|... +.+.+..-+++++++-. . .+..|.--.|-. ..+....+..++.++.
T Consensus 94 ~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~---~~~~~~IiARTDa~--~~~~~~~~eai~Ra~a 168 (243)
T cd00377 94 EEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD---DLPDFVIIARTDAL--LAGEEGLDEAIERAKA 168 (243)
T ss_pred HHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh---ccCCeEEEEEcCch--hccCCCHHHHHHHHHH
Confidence 899999999955442 44555555555555433 1 112222221210 1113679999999999
Q ss_pred HHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 829 LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
..++|||.+.+. |..+++.+..+ .++. ++|+-+....... .-+.-.-.+.|+++|-...
T Consensus 169 y~~AGAD~v~v~---~~~~~~~~~~~----~~~~-~~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~ 227 (243)
T cd00377 169 YAEAGADGIFVE---GLKDPEEIRAF----AEAP-DVPLNVNMTPGGN--LLTVAELAELGVRRVSYGL 227 (243)
T ss_pred HHHcCCCEEEeC---CCCCHHHHHHH----HhcC-CCCEEEEecCCCC--CCCHHHHHHCCCeEEEECh
Confidence 999999999874 44466555554 4444 7898887655432 1233445567888885544
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
Probab=85.62 E-value=13 Score=42.53 Aligned_cols=113 Identities=13% Similarity=0.009 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC--------CCCCCCCHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN--------PNKKKYSLNYYEDLA 826 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~--------p~~~~~~~~~~~~~a 826 (1427)
..+.++.++++|.+.+-+..+.. ..+....+.+++.|+ .+...-++.+++.. |+......+.+.+.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~--~~~~~l~~~l~~~gl---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD--WDAEALKARLAAAGL---EQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAI 90 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc--CCHHHHHHHHHHcCC---eEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHH
Confidence 56778999999999999976432 234555566778898 54432223222211 111011135666778
Q ss_pred HHHHHCCCCEEEEccccCc----CCHHH-HHHHHHHHHHHc-----CCceEEEeecCC
Q psy15244 827 KQLVESGAQVLCLKDMAGL----LKPTA-AKLLIGSFREKY-----PNILIHVHTHDM 874 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~Dt~G~----l~P~~-~~~lv~~lr~~~-----p~ipi~~H~Hnd 874 (1427)
+.+.++|+..|.+. .|. ....+ -..+++.+++.. -++.|.++.||.
T Consensus 91 ~~a~~lg~~~i~~~--~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 91 AYARALGCPQVNCL--AGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHhCCCEEEEC--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 88888999998874 232 12233 233334444321 178888888853
|
This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=85.54 E-value=16 Score=43.09 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEE-------ccccC---cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESG-AQVLCL-------KDMAG---LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLAC 885 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~G-ad~i~i-------~Dt~G---~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laA 885 (1427)
.+.+.|.+.++.+.++| +|.|-| +.. | ...|+...++++++|+.+ ++||.+..=.+.--...-+-.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g-g~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l 178 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG-GMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAA 178 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC-ccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHH
Confidence 56778888888888887 887766 210 2 236899999999999998 8999887654433333444567
Q ss_pred HHhcCCEEEe
Q psy15244 886 VKAGADIVDV 895 (1427)
Q Consensus 886 i~AGad~VD~ 895 (1427)
.++|+|.|+.
T Consensus 179 ~~~G~d~i~~ 188 (301)
T PRK07259 179 EEAGADGLSL 188 (301)
T ss_pred HHcCCCEEEE
Confidence 7899998865
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.49 E-value=54 Score=39.16 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=103.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
-++.+++..+++...+ .|+..|=..||-- .++.|--+-++.+++. .--.+.|- .|.+ ...
T Consensus 42 ~Ls~eei~~~~~~~~~--~Gv~kvRlTGGEP------llR~dl~eIi~~l~~~-~~~~islT---TNG~--------~L~ 101 (322)
T COG2896 42 LLSLEEIRRLVRAFAE--LGVEKVRLTGGEP------LLRKDLDEIIARLARL-GIRDLSLT---TNGV--------LLA 101 (322)
T ss_pred cCCHHHHHHHHHHHHH--cCcceEEEeCCCc------hhhcCHHHHHHHHhhc-ccceEEEe---cchh--------hHH
Confidence 4789999999999988 7999999987742 3455544444555443 11113332 2332 244
Q ss_pred HHHHHHHhcCCCEEEEeccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
.+.+..+++|++.++|..-.=| +......|++|.++|..+..+...+. + ..+.+.+.+
T Consensus 102 ~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~-------k---gvNd~ei~~ 171 (322)
T COG2896 102 RRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLM-------K---GVNDDEIED 171 (322)
T ss_pred HHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEe-------c---CCCHHHHHH
Confidence 5677888999999998644332 34667889999999994444443322 1 278899999
Q ss_pred HHHHHHHCCCC--EEEEccccC-----cCCHHHHHHHHHHHHHHcCCceEE
Q psy15244 825 LAKQLVESGAQ--VLCLKDMAG-----LLKPTAAKLLIGSFREKYPNILIH 868 (1427)
Q Consensus 825 ~a~~l~~~Gad--~i~i~Dt~G-----~l~P~~~~~lv~~lr~~~p~ipi~ 868 (1427)
+++-+.+.|+. .|-+-|+-. .-......++...+.+.++-.++-
T Consensus 172 l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 222 (322)
T COG2896 172 LLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVR 222 (322)
T ss_pred HHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccc
Confidence 99999999975 566777653 111122445555555555434443
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.47 E-value=7 Score=46.17 Aligned_cols=77 Identities=25% Similarity=0.208 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE---c-cc---cC-----cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCL---K-DM---AG-----LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i---~-Dt---~G-----~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
++.+.|.++++.+.+.|+|.|-| | .+ -| .-.|+.+.++++++|+.. ++||.+-..-+.---..-+-+
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHH
Confidence 57889999999999889997776 2 11 11 256999999999999987 788888766444333334445
Q ss_pred HHHhcCCEEE
Q psy15244 885 CVKAGADIVD 894 (1427)
Q Consensus 885 Ai~AGad~VD 894 (1427)
+.++|||.|-
T Consensus 189 ~~~~Gadgi~ 198 (299)
T cd02940 189 AKEGGADGVS 198 (299)
T ss_pred HHHcCCCEEE
Confidence 7789999874
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=85.42 E-value=27 Score=41.85 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=99.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCC-ceeeeecccccccccCCCcch
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNI-PFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~-~~qml~Rg~n~vgy~~~~~nv 754 (1427)
..++.+++..+++.+.+ .|+..|-+.||.- +++.+-.+.++.+++ .++. .+.+...|. .
T Consensus 41 ~~ls~eei~~~i~~~~~--~gv~~V~ltGGEP------ll~~~l~~li~~i~~-~~gi~~v~itTNG~-----------l 100 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVG--LGVRKVRLTGGEP------LLRKDLVELVARLAA-LPGIEDIALTTNGL-----------L 100 (334)
T ss_pred CCCCHHHHHHHHHHHHH--CCCCEEEEECccc------cccCCHHHHHHHHHh-cCCCCeEEEEeCch-----------h
Confidence 35899999999999887 6999998888753 455555555666554 3344 344433331 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccC-C------------hHHHHHHHHHHHHHhcCCCcE-EEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL-N------------SVPNLVKGMDAVQQVTGGSTI-VEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~-n------------d~~~~~~~i~~a~~~G~~~~~-v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+.++...++|++.+.|..-. + +++....+++.++++|. . +...+... + ..+.+
T Consensus 101 l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~---~~v~in~vv~-----~---g~n~~ 169 (334)
T TIGR02666 101 LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGL---EPVKLNTVVM-----R---GVNDD 169 (334)
T ss_pred HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCC---CcEEEEEEEe-----C---CCCHH
Confidence 2345777888999988875432 2 24566778888888888 3 33332222 1 25778
Q ss_pred HHHHHHHHHHHCCCC--EEEEccccCcCC--H---HHHHHHHHHHHHHcC
Q psy15244 821 YYEDLAKQLVESGAQ--VLCLKDMAGLLK--P---TAAKLLIGSFREKYP 863 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad--~i~i~Dt~G~l~--P---~~~~~lv~~lr~~~p 863 (1427)
.+.++++.+.+.|++ .+.+....+... . ....++++.+++.++
T Consensus 170 ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~ 219 (334)
T TIGR02666 170 EIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSADEILERLEQAFG 219 (334)
T ss_pred HHHHHHHHHHhcCCeEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence 888999999999986 233444433211 0 125567777777763
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=85.42 E-value=3.4 Score=50.00 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcH
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAM 909 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~l 909 (1427)
.|.+.+.=+=.-++-+|++..++|..||+..|+.||++-.=-..+....... +.++|+|.| +++|.+|+||..+.
T Consensus 171 ~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~I--tIDG~~GGTGAap~ 245 (368)
T PF01645_consen 171 PGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFI--TIDGAEGGTGAAPL 245 (368)
T ss_dssp TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEE--EEE-TT---SSEEC
T ss_pred CCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEE--EEeCCCCCCCCCch
Confidence 4777777777777889999999999999999999999987665555544333 899999999 89999999998753
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=5.7 Score=46.71 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=30.4
Q ss_pred CcchHHHHHHHHHhcCCCEEEEeccCCh--HHHHHHHHHHHHHh
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRVFDPLNS--VPNLVKGMDAVQQV 792 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~rif~~~nd--~~~~~~~i~~a~~~ 792 (1427)
+++.+..+++.+.+.|+|.|++.|.+-- ...+...++.+++.
T Consensus 153 ~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 153 PPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 4556777888888888888888888773 34666666666654
|
|
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=37 Score=39.75 Aligned_cols=202 Identities=15% Similarity=0.215 Sum_probs=108.7
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CCceeee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NIPFQMI 738 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~~~qml 738 (1427)
+|--+|=||.+. ++.+..++=+..+-+ .|.+.|++||.+|-..+-.--.|..|+|+..+-+.+. +.+
T Consensus 10 vTPDSFsDGg~~-----~~~d~a~~~a~~m~~--~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~---- 78 (279)
T PRK13753 10 LTEDSFFDESRR-----LDPAGAVTAAIEMLR--VGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR---- 78 (279)
T ss_pred CCCCCCCCCCCC-----CCHHHHHHHHHHHHH--CCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc----
Confidence 445567788652 566777777777766 6999999999877332211112234665533323221 122
Q ss_pred ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeecc-CC-CCC--C
Q psy15244 739 LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGD-LT-NPN--K 814 (1427)
Q Consensus 739 ~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d-~~-~p~--~ 814 (1427)
+....|-. +-+++|.++|+|++.=...+++ ..|. +.+.+.+. -..++.... =+ .+. .
T Consensus 79 ------ISIDT~~~----~va~~al~aGadiINDVsg~~d-~~~~---~vva~~~~-----~vVlmH~~~~~~~~~~~~~ 139 (279)
T PRK13753 79 ------VSIDSFQP----ETQRYALKRGVGYLNDIQGFPD-PALY---PDIAEADC-----RLVVMHSAQRDGIATRTGH 139 (279)
T ss_pred ------EEEECCCH----HHHHHHHHcCCCEEEeCCCCCc-hHHH---HHHHHcCC-----CEEEEecCCCCCCCCcccC
Confidence 22222333 3467888999999876666653 3333 33444554 123333310 00 010 1
Q ss_pred CCC------CHHHHHHHHHHHHHCCC--CEEEEccccCcC---CHHHHHHHHHHHHHH---cCCceEEE-----------
Q psy15244 815 KKY------SLNYYEDLAKQLVESGA--QVLCLKDMAGLL---KPTAAKLLIGSFREK---YPNILIHV----------- 869 (1427)
Q Consensus 815 ~~~------~~~~~~~~a~~l~~~Ga--d~i~i~Dt~G~l---~P~~~~~lv~~lr~~---~p~ipi~~----------- 869 (1427)
..| -.+|+.+.++.+.++|+ +.|.|==-.|.. ++++-.+|++.+.+- + +.||-+
T Consensus 140 ~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~-g~PvLvg~SRKsfig~~ 218 (279)
T PRK13753 140 LRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSAL-GLPLLVSVSRKSFLGAT 218 (279)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhC-CCceEEEccHhHHHHHH
Confidence 112 13466667777888998 466665456653 567777787775433 4 566422
Q ss_pred ---eecCCcchHHHHHHHHHHhcCCEE
Q psy15244 870 ---HTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 870 ---H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
..++-..-.+|....|+..||++|
T Consensus 219 ~~~~~~~R~~~T~a~~~~a~~~Ga~iv 245 (279)
T PRK13753 219 VGLPVKDLGPASLAAELHAIGNGADYV 245 (279)
T ss_pred cCCChhhhhHhHHHHHHHHHHcCCCEE
Confidence 222333334445555666777765
|
|
| >PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2 | Back alignment and domain information |
|---|
Probab=85.19 E-value=20 Score=40.85 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.+.+.-.+.++++.+.+.+.+.|.-........+..++|+.+.+.+| +.|++++.- | ...+.+.++..|+|.+|+
T Consensus 65 ~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~G~---~-~P~~i~~~v~~GvD~fDs 140 (238)
T PF01702_consen 65 DDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLLGV---G-TPEEILEAVYLGVDLFDS 140 (238)
T ss_dssp T-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEETTB-----SHHHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceeccCC---C-CHHHHHHHHHcCCcEEcc
Confidence 56667788889998877999999877766678899999999998886 888877322 2 567889999999999999
Q ss_pred cccc
Q psy15244 896 AADS 899 (1427)
Q Consensus 896 av~G 899 (1427)
+..-
T Consensus 141 ~~p~ 144 (238)
T PF01702_consen 141 SYPT 144 (238)
T ss_dssp SHHH
T ss_pred hHHH
Confidence 9743
|
4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A .... |
| >KOG2157|consensus | Back alignment and domain information |
|---|
Probab=85.19 E-value=3.3 Score=51.85 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=40.8
Q ss_pred CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC-CCcEEEEeeccCC
Q psy15244 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG-KDDMLVEKYIDRP 262 (1427)
Q Consensus 208 GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg-~~~vlVEeyIegg 262 (1427)
....|+||..-.-|+|++++++.+++...+.....+ .+.. ++.+.+++||+.+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~--~s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF--ISENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccc--ccccccccceeeeeccCc
Confidence 467999999999999999999999998876532211 1111 5788999999877
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.17 E-value=59 Score=38.40 Aligned_cols=189 Identities=14% Similarity=0.195 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEEccccC--cCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 817 YSLNYYEDLAKQLVES-GAQVLCLKDMAG--LLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~-Gad~i~i~Dt~G--~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
-+++|+++..+..++. |-..=..-|--| ++.|. +.+||++|++. |.+. +.+.+|-++ |.---.-+-.+||.|.
T Consensus 141 Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~-l~~lVqalk~~-~~v~vVSmQTng~~-L~~~lv~eLeeAGLdR 217 (414)
T COG2100 141 VDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPH-LVDLVQALKEH-KGVEVVSMQTNGVL-LSKKLVDELEEAGLDR 217 (414)
T ss_pred ecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchh-HHHHHHHHhcC-CCceEEEEeeCcee-ccHHHHHHHHHhCCce
Confidence 4566777666666654 222222334333 23333 45566666654 4444 355554332 2222333455799999
Q ss_pred EEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhh
Q psy15244 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVR 972 (1427)
Q Consensus 893 VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~ 972 (1427)
|+.|++++- +.++.+|.+. ..+|+++..++++++.+ +++.+-. .|++=-|+...+.-.+..+..++-
T Consensus 218 iNlSv~aLD--------pk~Ak~L~G~---~dYdv~kvle~aE~i~~-a~idvlI-aPv~lPG~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 218 INLSVDALD--------PKLAKMLAGR---KDYDVKKVLEVAEYIAN-AGIDVLI-APVWLPGVNDDEMPKIIEWAREIG 284 (414)
T ss_pred EEeecccCC--------HHHHHHhcCc---cccCHHHHHHHHHHHHh-CCCCEEE-eeeecCCcChHHHHHHHHHHHHhC
Confidence 999999884 2455555443 34899999999999988 7777543 366666666677777777666652
Q ss_pred hhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCCCcc
Q psy15244 973 ELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL-DFEDVKRAYRTANFLLGDIIKC 1034 (1427)
Q Consensus 973 ~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl-~~~ev~~~~~~v~~~lG~~~~v 1034 (1427)
. -....|..+ -....|+. |... ..... .|.|-.+-+.+.-++.|..+++
T Consensus 285 a-Gkk~p~lgi----Qkyipyk~-GRkp-------~~~k~~~fkeFYrwLrelEketg~kpLi 334 (414)
T COG2100 285 A-GKKWPPLGI----QKYIPYKF-GRKP-------VIAKVWPFKEFYRWLRELEKETGVKPLI 334 (414)
T ss_pred C-CCCCCCcce----EEeeeecc-cCCc-------cccccCcHHHHHHHHHHHHHHhCCCccc
Confidence 1 111110110 01111111 2110 01112 6778778888888899998866
|
|
| >PRK09989 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=59 Score=37.35 Aligned_cols=198 Identities=10% Similarity=0.016 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccc-cc--cc--cCCCc----
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNS-LV--GY--SNYSP---- 752 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n-~v--gy--~~~~~---- 752 (1427)
...+.++.+.+ .||+.||+++.. . -+++.++++.+.. +..+..+..+.. .. .+ ..-+.
T Consensus 16 ~l~~~l~~~~~--~Gfd~VEl~~~~---------~-~~~~~~~~~l~~~-Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK09989 16 PFIERFAAARK--AGFDAVEFLFPY---------D-YSTLQIQKQLEQN-HLTLALFNTAPGDINAGEWGLSALPGREHE 82 (258)
T ss_pred CHHHHHHHHHH--cCCCEEEECCcc---------c-CCHHHHHHHHHHc-CCcEEEeccCCCccCCCCCcccCCCccHHH
Confidence 35566667777 799999997532 1 2244454443321 222222221110 00 01 01111
Q ss_pred --chHHHHHHHHHhcCCCEEEEeccC-----C-------hHHHHHHHHHHHHHhcCCCcEEEE-EEEeeccCCCCCCCCC
Q psy15244 753 --AEVGAFCRLASQAGIDIFRVFDPL-----N-------SVPNLVKGMDAVQQVTGGSTIVEA-TICYAGDLTNPNKKKY 817 (1427)
Q Consensus 753 --nvv~~~v~~a~~~Gid~~rif~~~-----n-------d~~~~~~~i~~a~~~G~~~~~v~~-~i~~t~d~~~p~~~~~ 817 (1427)
+..+..++.|.+.|.+.++++... + -+++++...+.+++.|. .... .+... ..+...-.
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l~lE~l~~~---~~~~~~~~ 156 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGK---RILVEALSPG---VKPHYLFS 156 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---EEEEEeCCCC---CCCCCccC
Confidence 124566677788899988876432 1 23566777778888887 3211 11100 00110012
Q ss_pred CHHHHHHHHHHHHHCCCCEE-EEccccCcCCHH-HHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 818 SLNYYEDLAKQLVESGAQVL-CLKDMAGLLKPT-AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 818 ~~~~~~~~a~~l~~~Gad~i-~i~Dt~G~l~P~-~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+.+...+++ .+.+.+.+ ..-|+.-...+. ...++++... +--.|+|.+|..+ .
T Consensus 157 ~~~~~~~ll---~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~----~ri~hvHi~D~~~------------------~ 211 (258)
T PRK09989 157 SQYQALAIV---EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYA----GKYAHVQIAGLPD------------------R 211 (258)
T ss_pred CHHHHHHHH---HHcCCCCeEEEeehHhHHHcCCCHHHHHHHhh----hhEEEEEECCCCC------------------C
Confidence 333344444 34454433 455765544331 2333343333 3335888886321 1
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
.. .| .|.-+...++.+|+..|++--+.+
T Consensus 212 ~~--pG--~G~id~~~i~~al~~~Gy~g~is~ 239 (258)
T PRK09989 212 HE--PD--DGEINYPWLFRLFDEVGYQGWIGC 239 (258)
T ss_pred CC--CC--CCCcCHHHHHHHHHHcCCCeEEEE
Confidence 11 22 467788899999999887643333
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.14 E-value=4.2 Score=48.56 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccc-cceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTK-VDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~-aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
++-++|+|.|-|..+...++-|+.+|.++++++..++......++ ||+.+.-. +. ...+..++. +|+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~----------~~-~~~~~~~~~-~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS----------DS-DALEAVKEI-ADA 232 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC----------Cc-hhhHHhHhh-CcE
Confidence 557899999999999999999999999999999998877667777 67665521 11 222222222 999
Q ss_pred EEeCCCcccccHHHHHHHHHCC-CceeCCCH-HHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE
Q psy15244 134 IHPGYGFLSEREDFAKAVIGAG-LEFIGPAP-NVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV 211 (1427)
Q Consensus 134 I~pg~gflsE~~~~a~~~e~~G-i~fiGps~-eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv 211 (1427)
|+-..+ -.......+.+...| +..+|... .... .-..+.-+++ ++.+.-+..+...+.+|+.+|+.+.+.
T Consensus 233 ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~---~~~~~~li~~--~~~i~GS~~g~~~d~~e~l~f~~~g~I-- 304 (339)
T COG1064 233 IIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIP---LLPAFLLILK--EISIVGSLVGTRADLEEALDFAAEGKI-- 304 (339)
T ss_pred EEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccC---CCCHHHhhhc--CeEEEEEecCCHHHHHHHHHHHHhCCc--
Confidence 987665 211123445555555 33455442 1110 0111112222 233222222234566777777776652
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHH
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQS 242 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ 242 (1427)
||.-. .....+|..++|+++.+
T Consensus 305 --kp~i~-------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 305 --KPEIL-------ETIPLDEINEAYERMEK 326 (339)
T ss_pred --eeeEE-------eeECHHHHHHHHHHHHc
Confidence 33211 35578889999988754
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.12 E-value=22 Score=45.28 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCCh------HHHHHHHHHH------HHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNS------VPNLVKGMDA------VQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd------~~~~~~~i~~------a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
-..+-++...++++..+-|.+.-+. ...+...+++ +++... ...|-+++... ..
T Consensus 183 sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~-~l~vgaavg~~-------------~~ 248 (505)
T PLN02274 183 DLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDG-KLLVGAAIGTR-------------ES 248 (505)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCC-CEEEEEEEcCC-------------cc
Confidence 3445566666777777766654332 2344444443 122222 12344443322 12
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
..+-+++|.++|+|.|.| |++- ..-..+-++|+.+|+.+|+++|-.=.= .....+..|+++|||.|=+++
T Consensus 249 ~~~r~~~l~~ag~d~i~i-D~~~-g~~~~~~~~i~~ik~~~p~~~vi~g~v----~t~e~a~~a~~aGaD~i~vg~ 318 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVL-DSSQ-GDSIYQLEMIKYIKKTYPELDVIGGNV----VTMYQAQNLIQAGVDGLRVGM 318 (505)
T ss_pred HHHHHHHHHHcCCCEEEE-eCCC-CCcHHHHHHHHHHHHhCCCCcEEEecC----CCHHHHHHHHHcCcCEEEECC
Confidence 357899999999999988 7753 333455689999999999888743111 123457889999999997743
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=84.86 E-value=14 Score=42.32 Aligned_cols=120 Identities=20% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHHhcCCCEEEEeccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHH
Q psy15244 759 CRLASQAGIDIFRVFDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLA 826 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a 826 (1427)
.+.+.++|+|.+-+.++... ++.|...++.+.+.-. .+....| .|+.+-.+++...+.+
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-------~~pviaD--~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-------LALIVAD--LPFGAYGAPTAAFELA 95 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-------CCCEEEe--CCCCCCcCHHHHHHHH
Confidence 45556789999988887652 3344444444443221 0112223 2333233668889999
Q ss_pred HHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCC------cc-------------hHHHHHHHHHH
Q psy15244 827 KQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDM------AG-------------TGVATTLACVK 887 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd------~G-------------lA~An~laAi~ 887 (1427)
+++.++||+.|.|-|.. +..+.|+++++. .++|--|+=-+ +| -++.-+.+-.+
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~ 167 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAP 167 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHH
Confidence 99999999999999963 455678888866 37777665432 22 33555667778
Q ss_pred hcCCEEEe
Q psy15244 888 AGADIVDV 895 (1427)
Q Consensus 888 AGad~VD~ 895 (1427)
||||.|=.
T Consensus 168 AGAd~i~~ 175 (240)
T cd06556 168 AGADLIVM 175 (240)
T ss_pred cCCCEEEE
Confidence 99988743
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=29 Score=41.95 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=107.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
=+.++.+++|+.+.+ .|...+=- |-+-|.- +-|..-. .+.|+.|++....+-+..+..- -+
T Consensus 112 Es~eq~l~~A~~lk~--~g~~~~r~g~~kpRtsp--~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev----------~d-- 174 (352)
T PRK13396 112 ENEEMIVETAKRVKA--AGAKFLRGGAYKPRTSP--YAFQGHG-ESALELLAAAREATGLGIITEV----------MD-- 174 (352)
T ss_pred cCHHHHHHHHHHHHH--cCCCEEEeeeecCCCCC--cccCCch-HHHHHHHHHHHHHcCCcEEEee----------CC--
Confidence 456788999999998 57765542 1111111 2232222 5666666665544444444321 12
Q ss_pred HHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
...++.+.+. +|++.|-.. ++.|.. .++++.+.|+ -+ +.-+| .-.+++.+...++.+.+.|-+
T Consensus 175 ~~~v~~~~~~-~d~lqIga~--~~~n~~-LL~~va~t~k---PV---llk~G-------~~~t~ee~~~A~e~i~~~Gn~ 237 (352)
T PRK13396 175 AADLEKIAEV-ADVIQVGAR--NMQNFS-LLKKVGAQDK---PV---LLKRG-------MAATIDEWLMAAEYILAAGNP 237 (352)
T ss_pred HHHHHHHHhh-CCeEEECcc--cccCHH-HHHHHHccCC---eE---EEeCC-------CCCCHHHHHHHHHHHHHcCCC
Confidence 1226666666 788777544 333322 3555556676 22 22222 124899999999999999999
Q ss_pred EEEEccc-----c-CcCCHHHH--HHHHHHHHHHcCCceEEE---eecCCcchHHHHHHHHHHhcCC--EEEecc
Q psy15244 836 VLCLKDM-----A-GLLKPTAA--KLLIGSFREKYPNILIHV---HTHDMAGTGVATTLACVKAGAD--IVDVAA 897 (1427)
Q Consensus 836 ~i~i~Dt-----~-G~l~P~~~--~~lv~~lr~~~p~ipi~~---H~Hnd~GlA~An~laAi~AGad--~VD~av 897 (1427)
.|.||.. . +. |... -..+..+|+.+ ++||-+ |.=-...+..+.+++|+.+||| +|+.=.
T Consensus 238 ~viL~erG~rtf~s~y--~~~~~dl~ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 238 NVILCERGIRTFDRQY--TRNTLDLSVIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred eEEEEecCCccCcCCC--CCCCcCHHHHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 8888865 2 22 2222 22366778777 789844 2223333455788999999999 877544
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=84.73 E-value=6.9 Score=44.42 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChH--HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSV--PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~--~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
.+..+++++.+.+.|.+.+-|.+..-++ +.....|+.+++.|+ .+-.-+-.- +..++ ...+++.+++.++..
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~---~v~~EvG~K--~~~~~-~~~~~~~~i~~~~~~ 143 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGF---MVLSEVGKK--SPEKD-SELTPDDRIKLINKD 143 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCC---eEecccccc--CCccc-ccCCHHHHHHHHHHH
Confidence 3568889999999999999999987765 467789999999999 443322222 11112 257889999999999
Q ss_pred HHCCCCE-----------EEEccccCcCCHHHHHHHHHH
Q psy15244 830 VESGAQV-----------LCLKDMAGLLKPTAAKLLIGS 857 (1427)
Q Consensus 830 ~~~Gad~-----------i~i~Dt~G~l~P~~~~~lv~~ 857 (1427)
.++||+. +.|+|..|-.....+.+++..
T Consensus 144 LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~ 182 (237)
T TIGR03849 144 LEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAEN 182 (237)
T ss_pred HHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhh
Confidence 9999985 466777777777766666553
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=34 Score=40.03 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcccc-CcCCH--HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH-HhcCCE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMA-GLLKP--TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV-KAGADI 892 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~-G~l~P--~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi-~AGad~ 892 (1427)
.+++.+++.++++.+.|++.+++.++. |.-.+ +.+.++++.+|++.|++ |.|...|+...-.+..+ +||++.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l----~i~~s~G~~~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGL----HLIACNGTASVEQLKELKKAGIFS 115 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCc----EEEecCCCCCHHHHHHHHHcCCCE
Confidence 588999999999999999999985322 22222 45677888888877543 44446788888888888 899999
Q ss_pred EEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhh
Q psy15244 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVR 972 (1427)
Q Consensus 893 VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~ 972 (1427)
+...+-. +. + .+. ...++-++....+..+...+ .|+.+-. --++|-+==.+..-.|...+.+.-
T Consensus 116 ~~~~lEt-~~--------~---~~~--~i~~~~~~~~~l~~i~~a~~-~Gi~v~s-g~I~GlGEt~ed~~~~l~~lr~L~ 179 (279)
T PRK08508 116 YNHNLET-SK--------E---FFP--KICTTHTWEERFQTCENAKE-AGLGLCS-GGIFGLGESWEDRISFLKSLASLS 179 (279)
T ss_pred Ecccccc-hH--------H---Hhc--CCCCCCCHHHHHHHHHHHHH-cCCeecc-eeEEecCCCHHHHHHHHHHHHcCC
Confidence 8774332 11 1 111 22344556665655555533 4543322 234554321233333333332221
Q ss_pred hhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccc-h-hhHHHH
Q psy15244 973 ELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPS-S-KVVADL 1044 (1427)
Q Consensus 973 ~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~-s-q~vg~~ 1044 (1427)
...-|+. +++.+||-. + ....+...+.++.++-.|-.|.+.-...+. - .+.|++
T Consensus 180 ~~svpl~-----------~~~p~~~t~---~----~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~ 235 (279)
T PRK08508 180 PHSTPIN-----------FFIPNPALP---L----KAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGER 235 (279)
T ss_pred CCEEeeC-----------CcCCCCCCC---C----CCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhh
Confidence 1112222 234555532 1 111246778999999999998765544444 2 334553
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=84.65 E-value=46 Score=40.74 Aligned_cols=157 Identities=10% Similarity=0.156 Sum_probs=94.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc-eeeeecccccccccCCCcchH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP-FQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~-~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.++.+++..++..+.+ .|+..|-+.||-- +++.+-.+-++.+++. ++.. +.+..-| +. .
T Consensus 89 ~ls~eei~~~i~~~~~--~Gv~~I~~tGGEP------llr~dl~eli~~l~~~-~gi~~i~itTNG-----~l------L 148 (373)
T PLN02951 89 LLSQDEIVRLAGLFVA--AGVDKIRLTGGEP------TLRKDIEDICLQLSSL-KGLKTLAMTTNG-----IT------L 148 (373)
T ss_pred cCCHHHHHHHHHHHHH--CCCCEEEEECCCC------cchhhHHHHHHHHHhc-CCCceEEEeeCc-----ch------H
Confidence 3889999999998887 7999998877743 3444433444444442 4443 3332222 11 2
Q ss_pred HHHHHHHHhcCCCEEEEecc-CC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDP-LN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~-~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+.++...++|++.+.|..- ++ .++.....++.+++.|.. .+...+... + ..+.+.+.
T Consensus 149 ~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~--~vkin~vv~-----~---g~N~~Ei~ 218 (373)
T PLN02951 149 SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYN--PVKVNCVVM-----R---GFNDDEIC 218 (373)
T ss_pred HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--cEEEEEEec-----C---CCCHHHHH
Confidence 23466777899998887643 32 134566778888888862 233222221 1 36778899
Q ss_pred HHHHHHHHCCCCE--EEEccccCcC--C--HHHHHHHHHHHHHHcC
Q psy15244 824 DLAKQLVESGAQV--LCLKDMAGLL--K--PTAAKLLIGSFREKYP 863 (1427)
Q Consensus 824 ~~a~~l~~~Gad~--i~i~Dt~G~l--~--P~~~~~lv~~lr~~~p 863 (1427)
++++.+.+.|++. |.+.-+.|.. . .....++...|++.+|
T Consensus 219 ~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 219 DFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred HHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 9999999988753 4444443321 1 1125667777777764
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=84.64 E-value=38 Score=41.07 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCc-CCHHHHHHHHHHHHHHcCCceEEEe-------ecCCcchHHHHHHH-HH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGL-LKPTAAKLLIGSFREKYPNILIHVH-------THDMAGTGVATTLA-CV 886 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~-l~P~~~~~lv~~lr~~~p~ipi~~H-------~Hnd~GlA~An~la-Ai 886 (1427)
+.+++.+++.++++.+.|++.++|.+-... +..+.+.++++.+|+.+|++.++.- .=+..|+.....+. -.
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 368999999999999999999999732222 2236788999999999875554441 12346776666555 44
Q ss_pred HhcCCEEE
Q psy15244 887 KAGADIVD 894 (1427)
Q Consensus 887 ~AGad~VD 894 (1427)
+||++.+.
T Consensus 158 eAGld~~~ 165 (351)
T TIGR03700 158 EAGLDSMP 165 (351)
T ss_pred HcCCCcCC
Confidence 68999876
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
|---|
Probab=84.59 E-value=1.1 Score=53.08 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=30.1
Q ss_pred eeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1395 TLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1395 ~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.++.+|.|.+++|++||.|++||+|+.|+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld 79 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTID 79 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEEC
Confidence 45999999999999999999999999999986
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=84.58 E-value=45 Score=38.55 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=117.5
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHH-hCCCCceee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRE-LIPNIPFQM 737 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~-~~p~~~~qm 737 (1427)
+.=+|-|+=.|- ..+.+|+.++.+...+ .|++++=+-.+. ++...+ ...++++.+
T Consensus 20 ~~aiDh~~l~gp------~~~~~~~~~~~~~a~~--~~~~~v~~~p~~----------------~~~~~~~~~~~~~~~~ 75 (258)
T TIGR01949 20 IVPMDHGVSNGP------IKGLVDIRKTVNEVAE--GGADAVLLHKGI----------------VRRGHRGYGKDVGLII 75 (258)
T ss_pred EEECCCccccCC------CCCcCCHHHHHHHHHh--cCCCEEEeCcch----------------hhhcccccCCCCcEEE
Confidence 345677765552 1345677777777766 588888664321 111111 123455433
Q ss_pred eecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 738 ILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 738 l~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
-+-+....|...... ..-..++.|++.|++.+.+-+... .++.+....+.+++.|. .+-+ +.+.. .
T Consensus 76 ~~~~~~~~g~~~~~~-~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~---~liv-~~~~~---G 147 (258)
T TIGR01949 76 HLSASTSLSPDPNDK-RIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGV---PLLA-MMYPR---G 147 (258)
T ss_pred EEcCCCCCCCCCCcc-eeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC---CEEE-EEecc---C
Confidence 222222233222221 233358899999999877766532 22345555566666776 2222 23320 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEee-c--CCcchHHHHHHHHHHh
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHT-H--DMAGTGVATTLACVKA 888 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~-H--nd~GlA~An~laAi~A 888 (1427)
......+.+.+...++.+.++|||.|.+. .. ..++ .++.+.+.. .+||-.=. - +|...++.|.-.++++
T Consensus 148 vh~~~~~~~~~~~~~~~a~~~GADyikt~-~~--~~~~----~l~~~~~~~-~iPVva~GGi~~~~~~~~~~~i~~~~~a 219 (258)
T TIGR01949 148 PHIDDRDPELVAHAARLGAELGADIVKTP-YT--GDID----SFRDVVKGC-PAPVVVAGGPKTNSDREFLQMIKDAMEA 219 (258)
T ss_pred cccccccHHHHHHHHHHHHHHCCCEEecc-CC--CCHH----HHHHHHHhC-CCcEEEecCCCCCCHHHHHHHHHHHHHc
Confidence 11112455667777788889999999975 11 2223 344444444 46664422 2 2566778999999999
Q ss_pred cCCEEEeccccCCCCCCCCcHHHHHHHHHh
Q psy15244 889 GADIVDVAADSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 889 Gad~VD~av~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
||+.+-+.-+= ..+++..+.+..|..
T Consensus 220 Ga~Gia~g~~i----~~~~dp~~~~~~l~~ 245 (258)
T TIGR01949 220 GAAGVAVGRNI----FQHDDPVGITKAVCK 245 (258)
T ss_pred CCcEEehhhHh----hcCCCHHHHHHHHHH
Confidence 99965433222 234555566665554
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.58 E-value=20 Score=42.11 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--------CCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK--------KKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~--------~~~~~~~~~ 823 (1427)
.+.|.+|.++|.+.+-+=.|--++ +.-++.+++|+..|. .||+-|-..+. .++. ..++++...
T Consensus 87 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv---~VEaElG~igg--~ed~~~~~~~~~~~T~peea~ 161 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDC---SVEAELGRLGG--VEDDMSVDAESAFLTDPQEAK 161 (286)
T ss_pred HHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEEEeeCC--ccCCcccccchhcCCCHHHHH
Confidence 346889999999887554444443 455788899999999 88877766542 2221 134566555
Q ss_pred HHHHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 824 DLAKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++++ +.|+|.|.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|..--....|++.|+.-|+..
T Consensus 162 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~-~vPLVLHG--gSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 162 RFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV-DVPLVLHG--ASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred HHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh-CCCEEEeC--CCCCCHHHHHHHHHcCCeEEEeC
Confidence 5543 45999777641 22222 4666678899999998 89987765 56777889999999999998765
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=84.57 E-value=15 Score=41.53 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGA 834 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Ga 834 (1427)
..++++.+.+.|+|.+.+-+.. . ...++.+++.+. .+-. . .++. +.++.+.+.|+
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~-~----~~~~~~~~~~~i---~~i~----~---------v~~~----~~~~~~~~~ga 123 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGP-P----AEVVERLKAAGI---KVIP----T---------VTSV----EEARKAEAAGA 123 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCC-C----HHHHHHHHHcCC---EEEE----e---------CCCH----HHHHHHHHcCC
Confidence 5678999999999999886652 1 334555666565 3211 1 1222 44566777899
Q ss_pred CEEEEcc--ccCcCCHH--HHHHHHHHHHHHcCCceEEEeecCCcchHH-HHHHHHHHhcCCEEEeccccCCCCCCCCcH
Q psy15244 835 QVLCLKD--MAGLLKPT--AAKLLIGSFREKYPNILIHVHTHDMAGTGV-ATTLACVKAGADIVDVAADSMSGICSQPAM 909 (1427)
Q Consensus 835 d~i~i~D--t~G~l~P~--~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~-An~laAi~AGad~VD~av~GmG~~tgn~~l 909 (1427)
|.|.+-. +.|...+. ...++++.+++.+ ++||-... |... .|+..++++||+.|.+.-.=+. ....+..
T Consensus 124 d~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~G----GI~~~~~v~~~l~~GadgV~vgS~l~~-~~e~~~~ 197 (236)
T cd04730 124 DALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAG----GIADGRGIAAALALGADGVQMGTRFLA-TEESGAS 197 (236)
T ss_pred CEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEEC----CCCCHHHHHHHHHcCCcEEEEchhhhc-CcccCCC
Confidence 9887633 22433332 3467888888877 78887754 6654 7888889999999988644443 3333444
Q ss_pred HHHHHHHHhC
Q psy15244 910 GTIVSCLENT 919 (1427)
Q Consensus 910 E~vv~~L~~~ 919 (1427)
..+...|...
T Consensus 198 ~~~~~~~~~~ 207 (236)
T cd04730 198 PAYKQALLAA 207 (236)
T ss_pred HHHHHHHHcC
Confidence 5566666655
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein | Back alignment and domain information |
|---|
Probab=84.54 E-value=1.7 Score=54.46 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
..|.++..|.|.+++|++||.|++||+|+.|..
T Consensus 60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 356666666666666666666666666666643
|
This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=84.47 E-value=25 Score=40.68 Aligned_cols=164 Identities=12% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC-CCceeeeecccccccccCCCcchHHHH
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP-NIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p-~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
.+++.+.++.+.+ .|+..+-+--|.. .+...++++.+|+.++ +..+.+ -+ | -+|+ .+...+|
T Consensus 86 ~~~~~~~~~~~~~--~G~~~~KiKvg~~--------~~~d~~~v~~vr~~~g~~~~l~v--Da-n-~~~~---~~~a~~~ 148 (265)
T cd03315 86 PAEVAEEARRALE--AGFRTFKLKVGRD--------PARDVAVVAALREAVGDDAELRV--DA-N-RGWT---PKQAIRA 148 (265)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEecCCC--------HHHHHHHHHHHHHhcCCCCEEEE--eC-C-CCcC---HHHHHHH
Confidence 4666666665555 5988777633321 1345788999999886 454432 22 2 2343 3345667
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++...+.|++.+.--.+..+++.+...- +..+. .|+..+ +-++...+.+ .+..-.+|.|.
T Consensus 149 ~~~l~~~~i~~iEeP~~~~d~~~~~~l~---~~~~i-------pia~dE-------~~~~~~~~~~---~i~~~~~d~v~ 208 (265)
T cd03315 149 LRALEDLGLDYVEQPLPADDLEGRAALA---RATDT-------PIMADE-------SAFTPHDAFR---ELALGAADAVN 208 (265)
T ss_pred HHHHHhcCCCEEECCCCcccHHHHHHHH---hhCCC-------CEEECC-------CCCCHHHHHH---HHHhCCCCEEE
Confidence 8888888998887655555666554432 22233 233322 2455555443 23334578777
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
++=+ =+.-...+.++....+ .. ++++.+|+|...|++.+.++
T Consensus 209 ~k~~-~~GGi~~~~~~~~~A~-~~-gi~~~~~~~~~s~i~~~a~~ 250 (265)
T cd03315 209 IKTA-KTGGLTKAQRVLAVAE-AL-GLPVMVGSMIESGLGTLANA 250 (265)
T ss_pred Eecc-cccCHHHHHHHHHHHH-Hc-CCcEEecCccchHHHHHHHH
Confidence 6532 2222334555555444 44 79999999988888876654
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=84.46 E-value=27 Score=41.44 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.+++.+.++.+.+ .|+..+.+--|.. .+...++++.+|+.+++..+. +-+. -+|+. +...++
T Consensus 134 ~~~~~~~~~~~~~~--~Gf~~iKik~g~~--------~~~d~~~v~~lr~~~g~~~l~--vD~n--~~~~~---~~A~~~ 196 (316)
T cd03319 134 TPEAMAAAAKKAAK--RGFPLLKIKLGGD--------LEDDIERIRAIREAAPDARLR--VDAN--QGWTP---EEAVEL 196 (316)
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEEeCCC--------hhhHHHHHHHHHHhCCCCeEE--EeCC--CCcCH---HHHHHH
Confidence 35666666666655 5999988732211 145678999999988744333 2221 23432 335667
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++...+.++..+.=..+.++++.+.+. .+..+. .|+..+ +-++...+.++ +..-++|.+.
T Consensus 197 ~~~l~~~~l~~iEeP~~~~d~~~~~~L---~~~~~i-------pIa~~E-------~~~~~~~~~~~---~~~~~~d~v~ 256 (316)
T cd03319 197 LRELAELGVELIEQPVPAGDDDGLAYL---RDKSPL-------PIMADE-------SCFSAADAARL---AGGGAYDGIN 256 (316)
T ss_pred HHHHHhcCCCEEECCCCCCCHHHHHHH---HhcCCC-------CEEEeC-------CCCCHHHHHHH---HhcCCCCEEE
Confidence 787778888777644444566655542 122233 223222 24555554432 3335678776
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
++ ..=+.-...+.++....+ .. ++++.+|+|...+++.+.++
T Consensus 257 ~~-~~~~GGi~~~~~~~~~a~-~~-gi~~~~~~~~~~~i~~~a~~ 298 (316)
T cd03319 257 IK-LMKTGGLTEALRIADLAR-AA-GLKVMVGCMVESSLSIAAAA 298 (316)
T ss_pred Ee-ccccCCHHHHHHHHHHHH-Hc-CCCEEEECchhhHHHHHHHH
Confidence 64 333333445555544444 45 79999999988888776443
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15030 multidrug efflux system transporter AcrA; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=1.7 Score=53.38 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=42.0
Q ss_pred EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1371 VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1371 v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|+.++.-..=.....+++.. +..|.++.+|+|.++.+++||.|++||+|++|+
T Consensus 43 ~~v~~~~~~~~~~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld 97 (397)
T PRK15030 43 VTVKTEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQID 97 (397)
T ss_pred EeeeEeecceeEEEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEEC
Confidence 3444444323333445667644 788999999999999999999999999999986
|
|
| >PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=2 Score=55.61 Aligned_cols=73 Identities=21% Similarity=0.424 Sum_probs=0.0
Q ss_pred cCCCCCCCceecCCCeEEEEEEecCCCEEec---CCEEEEEEcCCceeeeecCCCeEEEEEE------------------
Q psy15244 1351 KADSDTAGEIGAPMPGNIIEVKVKVGQQVKK---NDVLIVMSVMKTETLIHASADGVVKEIF------------------ 1409 (1427)
Q Consensus 1351 ~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~---G~~l~~ieamKme~~i~Ap~~G~V~~i~------------------ 1409 (1427)
.........|.||+.|+++.+.=-+-..-.+ |+-+++.-. +..|.||++|+|+.+.
T Consensus 492 ~~~~~~~~~v~aP~~G~vi~l~~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLI 568 (648)
T PRK10255 492 VPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVV 568 (648)
T ss_pred cccccCceEEEecCCcEEEEcccCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEE
Q ss_pred -----------------ecCCCeeCCCCEEEEEe
Q psy15244 1410 -----------------VEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1410 -----------------v~~G~~V~~g~~L~~i~ 1426 (1427)
|++||+|++||+|++++
T Consensus 569 HiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 569 HMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred EeccchhccCCCCceEEecCCCEEcCCCEEEEEc
|
|
| >PRK09997 hydroxypyruvate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=53 Score=37.72 Aligned_cols=201 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCC------
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYS------ 751 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~------ 751 (1427)
++.-+.....+.+.+ .||+.||+|+.. ..++-+-.+.+.+.--.+....+..+...-+...+.
T Consensus 12 ~~~~~l~~~l~~~a~--~Gf~~VEl~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK09997 12 FGEYDFLARFEKAAQ--CGFRGVEFMFPY---------DYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGRE 80 (258)
T ss_pred ccCCCHHHHHHHHHH--hCCCEEEEcCCC---------CCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcH
Q ss_pred ---cchHHHHHHHHHhcCCCEEEEeccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCC
Q psy15244 752 ---PAEVGAFCRLASQAGIDIFRVFDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKK 816 (1427)
Q Consensus 752 ---~nvv~~~v~~a~~~Gid~~rif~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~ 816 (1427)
.+..++.++.|.+.|.+.++++..... .+.+..+.+.+++.|. ..++-.-..+..|...-
T Consensus 81 ~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-----~l~lE~~n~~~~~~~~~ 155 (258)
T PRK09997 81 EEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDI-----LLLIEPINHFDIPGFHL 155 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-----EEEEEeCCCcCCCCCcc
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCH-HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP-TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P-~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.+.+...++++.+. .-..--.-|+.=.... ....+.++.+.+.+ .|+|.+|..+-+
T Consensus 156 ~~~~~~~~ll~~v~--~~~v~l~~D~~h~~~~g~~~~~~~~~~~~ri----~~vHikD~~~~~----------------- 212 (258)
T PRK09997 156 TGTRQALKLIDDVG--CCNLKIQYDIYHMQRMEGELTNTMTQWADKI----GHLQIADNPHRG----------------- 212 (258)
T ss_pred CCHHHHHHHHHHhC--CCCEEEEeEHHHhhhcCCcHHHHHHHhhCcc----cEEEeCCCCCCC-----------------
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
-=+.|.-+...++.+|+..|++
T Consensus 213 -----~~G~G~id~~~i~~aL~~~Gy~ 234 (258)
T PRK09997 213 -----EPGTGEINYDYLFKVIENSDYN 234 (258)
T ss_pred -----CCCCCcCCHHHHHHHHHHhCCC
|
|
| >PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins | Back alignment and domain information |
|---|
Probab=84.32 E-value=2.9 Score=51.16 Aligned_cols=75 Identities=32% Similarity=0.360 Sum_probs=49.6
Q ss_pred EEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEE-------EecCCCEEecCCEEE--EEEcCCceeee
Q psy15244 1327 VFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEV-------KVKVGQQVKKNDVLI--VMSVMKTETLI 1397 (1427)
Q Consensus 1327 v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v-------~V~~Gd~V~~G~~l~--~ieamKme~~i 1397 (1427)
+-++++|....|.-..... .+..+...|.+|.|--+|+|.++ .|++||.|++||+|+ .++....+..
T Consensus 162 V~i~~~GT~l~I~v~E~~~---p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~- 237 (385)
T PF06898_consen 162 VGIEIKGTRLIIEVVEKVD---PEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE- 237 (385)
T ss_pred EEEEEEeeEEEEEEEEcCC---CCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE-
Confidence 5566677766552111111 13344567899999999999975 789999999999998 5555444444
Q ss_pred ecCCCeEEE
Q psy15244 1398 HASADGVVK 1406 (1427)
Q Consensus 1398 ~Ap~~G~V~ 1406 (1427)
-+.+|.|.
T Consensus 238 -v~A~G~V~ 245 (385)
T PF06898_consen 238 -VHADGDVK 245 (385)
T ss_pred -ECCcEEEE
Confidence 44566664
|
YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown []. |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.28 E-value=19 Score=42.32 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC------CCCCHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK------KKYSLNYYEDL 825 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~------~~~~~~~~~~~ 825 (1427)
.+++.+|.+.|.+.+-+=.|--++ +.-++.++.|+..|. .||+-|-..+. .++. ..++++...++
T Consensus 90 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv---~VEaElG~vgg--~ed~~~~~~~~yT~peea~~F 164 (286)
T PRK08610 90 FEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGV---SVEAELGTVGG--QEDDVVADGIIYADPKECQEL 164 (286)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeccCC--ccCCCCCcccccCCHHHHHHH
Confidence 345889999999887665554444 345678889999998 88888776642 2221 12467766666
Q ss_pred HHHHHHCCCCEEEEcc--ccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 826 AKQLVESGAQVLCLKD--MAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~D--t~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ +.|+|.+.++= .=|.- .|.-=.++++.+++.+ ++||.+|. .+|..-.....|+..|+.-|+...
T Consensus 165 v~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~-~vPLVLHG--gSG~~~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 165 VE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST-GLPLVLHG--GTGIPTKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred HH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH-CCCEEEeC--CCCCCHHHHHHHHHCCCeEEEecc
Confidence 54 56999776642 22222 2444466788888888 89987765 578888999999999999987653
|
|
| >PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=3 Score=53.98 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=40.4
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCC-------ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-------TETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
.+.|+=.+.+|++||+|++||+|+...--+ ..+.+.-.-......+....+..|+.||.++.+
T Consensus 556 ~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 556 KLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred hcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 456777789999999999999999875322 222322222222233444556678889987764
|
|
| >TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit | Back alignment and domain information |
|---|
Probab=84.23 E-value=0.88 Score=56.56 Aligned_cols=43 Identities=33% Similarity=0.312 Sum_probs=36.5
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~ 1409 (1427)
|.--+..|++||+|++||+|+..+. .....|.||++|+|++|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence 4455789999999999999998833 258899999999999885
|
The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=84.16 E-value=59 Score=39.67 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=125.5
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
++.+-..+.++...+.|++.+-+-.+...-.. .+.++.+.+.+. .+.. ..+. +.+.+. ++.+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~-~e~i~~i~~~~~---~~~i-~~~~---------r~~~~d----i~~a 81 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEE-RAVIRAIVALGL---PARL-MAWC---------RARDAD----IEAA 81 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHH-HHHHHHHHHcCC---CcEE-EEEc---------CCCHHH----HHHH
Confidence 45555667788888999999999655432211 234455555544 1111 1111 334333 4667
Q ss_pred HHCCCCEEEEccccCc--------CCHHH----HHHHHHHHHHHcCCceEEEeecCC----cchHHHHHHHHHHhcCCEE
Q psy15244 830 VESGAQVLCLKDMAGL--------LKPTA----AKLLIGSFREKYPNILIHVHTHDM----AGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~--------l~P~~----~~~lv~~lr~~~p~ipi~~H~Hnd----~GlA~An~laAi~AGad~V 893 (1427)
.++|++.|.|...+.- .++.+ +.+.|+..|+. +..+.+.+=|. ....+..+.++.++|++.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 7889999998886531 23333 33555555554 46666665443 3444455567888999987
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhh
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVR 972 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~ 972 (1427)
.. .-.-|..-.-.+.+++..++.. +...+++ +-|-+.-. .+..+....
T Consensus 160 ~l--~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H--------------------------~HNd~GlA---~ANalaA~~ 208 (365)
T TIGR02660 160 RF--ADTVGILDPFSTYELVRALRQAVDLPLEMH--------------------------AHNDLGMA---TANTLAAVR 208 (365)
T ss_pred EE--cccCCCCCHHHHHHHHHHHHHhcCCeEEEE--------------------------ecCCCChH---HHHHHHHHH
Confidence 32 2222222222344455554432 1111111 11111111 122222221
Q ss_pred hhcCCCCCCCCCcCcccEEEecCCCccHH-HHHHHH-HHCCC----CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHH
Q psy15244 973 ELYAPFECTDLKAASSEAYLYEIPGGQYT-NLKFRT-MSFGL----DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAI 1046 (1427)
Q Consensus 973 ~~Y~~f~~~~~~g~~~~v~~~~~pGg~~s-nl~~ql-~~~gl----~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~ 1046 (1427)
.--..++ ..+.| +|+-+|-.-. .+...| ..+|. +++.+.+....+.+.+|.++. |..=+||..|+
T Consensus 209 aGa~~vd-~tl~G------iGeraGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~--~~~p~vG~~~f 279 (365)
T TIGR02660 209 AGATHVN-TTVNG------LGERAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIP--PQKPVVGESVF 279 (365)
T ss_pred hCCCEEE-EEeec------cccccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC--CCCCcccHhHH
Confidence 1112233 22222 3454553321 233334 44465 788888888889999998753 45669999884
Q ss_pred HHHHcCCChh
Q psy15244 1047 FMTQEKLSYR 1056 (1427)
Q Consensus 1047 ~~v~~~~~~~ 1056 (1427)
- -..|.--+
T Consensus 280 ~-h~sGiH~~ 288 (365)
T TIGR02660 280 T-HESGIHVD 288 (365)
T ss_pred H-hccchhHH
Confidence 3 33454433
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.12 E-value=66 Score=39.28 Aligned_cols=232 Identities=11% Similarity=0.071 Sum_probs=131.8
Q ss_pred CcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccc-cCCCcc
Q psy15244 675 ATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGY-SNYSPA 753 (1427)
Q Consensus 675 a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy-~~~~~n 753 (1427)
+.-|+.+++++.++.+.+ .|+..+=+-||-.-+..+.|. -+-++.+++..|++.+-.+.-+. +-| .+....
T Consensus 87 ~y~Ls~eeI~~~~~~~~~--~G~~Evli~gG~~p~~~~~y~----~~~~~~ik~~~p~~~i~a~s~~e--i~~~~~~~~~ 158 (370)
T COG1060 87 AYTLSPEEILEEVREAVK--RGITEVLIVGGEHPELSLEYY----EELFRTIKEEFPDLHIHALSAGE--ILFLAREGGL 158 (370)
T ss_pred ccccCHHHHHHHHHHHHH--cCCeEEEEecCcCCCcchHHH----HHHHHHHHHhCcchhhcccCHHH--hHHHHhccCC
Confidence 456999999999999998 799999888876544433322 13457778777866554443220 111 111222
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSL 819 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~ 819 (1427)
..++.+++.+++|+|.+=.+-+-= +.+.=.+.++.|.++|+ ...+++.|.+ -++ +.+.
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI---~~tatml~Gh---~E~--~ed~ 230 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGI---PTTATMLLGH---VET--REDR 230 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---CccceeEEEe---cCC--HHHH
Confidence 356668888899998653332211 22233467788999999 5566777763 111 2222
Q ss_pred HHHHHHHHHHHH-C-CCCEEEE-----cccc---Cc---CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHH
Q psy15244 820 NYYEDLAKQLVE-S-GAQVLCL-----KDMA---GL---LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 820 ~~~~~~a~~l~~-~-Gad~i~i-----~Dt~---G~---l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
-.-+.-++.+.+ . |...+.+ +.+. .. ..+.+....|...|--+ +..|...-=-..-+++.-..+|+
T Consensus 231 ~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l-~~~i~~~~a~w~~~g~~~~~~~l 309 (370)
T COG1060 231 IDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFL-DNNISNIQASWLRDGVILAQAAL 309 (370)
T ss_pred HHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHc-cCccccccCcccccchHHHHHHH
Confidence 222333344443 3 3433322 1221 12 23344444444444333 22222222233444555678899
Q ss_pred HhcCCEEEecccc--CCCCCC-----CCcHHHHHHHHHhCCCCC
Q psy15244 887 KAGADIVDVAADS--MSGICS-----QPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 887 ~AGad~VD~av~G--mG~~tg-----n~~lE~vv~~L~~~g~~t 923 (1427)
.+||+=+.+++.. .--.+| .++.++++.+++..|+.+
T Consensus 310 ~~GanD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p 353 (370)
T COG1060 310 LSGANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAGRIP 353 (370)
T ss_pred HhCcccCcCCCcccccccccccccCCCCCHHHHHHHHHHcCCCe
Confidence 9999988777655 333355 778899999999887654
|
|
| >COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.11 E-value=1 Score=52.60 Aligned_cols=51 Identities=29% Similarity=0.342 Sum_probs=39.6
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-ceeeeecCCCeEEEEEEecC
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-TETLIHASADGVVKEIFVEV 1412 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-me~~i~Ap~~G~V~~i~v~~ 1412 (1427)
++-|+.|.=-++.|++||.|++||+|++ .-| --.-++||.+|+|.+|+-.+
T Consensus 32 lg~ey~gmrp~mkV~~gD~VkkGq~LfE--dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 32 LGEEYVGMRPSMKVREGDAVKKGQVLFE--DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred ccccccCCCCcceeccCCeeeccceeee--cccCCCeEEeccCCceEEEeeccc
Confidence 3446667667899999999999999985 344 34468999999999887443
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=83.96 E-value=30 Score=41.83 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=91.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchh---hhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCc
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSH---TCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSP 752 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd---~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~ 752 (1427)
.+.+.++..++|+.+.+ .|+..+=+.++.+-| ....+ -.+-++.|++..|.+.+..+..+- .|
T Consensus 128 ~~~d~~Ep~~vA~~v~~--~Glk~vvltSg~rddl~D~ga~~----~~elir~Ir~~~P~i~Ie~L~pdf--~~------ 193 (349)
T PLN02428 128 PPPDPDEPENVAEAIAS--WGVDYVVLTSVDRDDLPDGGSGH----FAETVRRLKQLKPEILVEALVPDF--RG------ 193 (349)
T ss_pred CCCChhhHHHHHHHHHH--cCCCEEEEEEcCCCCCCcccHHH----HHHHHHHHHHhCCCcEEEEeCccc--cC------
Confidence 46678888899999888 799888777775422 11111 124567888888888777764321 00
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCC------------hHHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLN------------SVPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYS 818 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~n------------d~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~ 818 (1427)
-.+.++..+++|.|++..-.-.+ +.+.....++.+++. |. .+..++.+. + --+
T Consensus 194 --d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi---~tkSg~MvG--L------GET 260 (349)
T PLN02428 194 --DLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGL---LTKTSIMLG--L------GET 260 (349)
T ss_pred --CHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC---eEEEeEEEe--c------CCC
Confidence 15568888899999876443221 334556677778887 77 555565554 2 146
Q ss_pred HHHHHHHHHHHHHCCCCEEEEc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLK 840 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~ 840 (1427)
.+.+.++++.+.+.|+|++.|.
T Consensus 261 ~Edv~e~l~~Lrelgvd~vtig 282 (349)
T PLN02428 261 DEEVVQTMEDLRAAGVDVVTFG 282 (349)
T ss_pred HHHHHHHHHHHHHcCCCEEeec
Confidence 7888888888888898888653
|
|
| >KOG2156|consensus | Back alignment and domain information |
|---|
Probab=83.90 E-value=3.7 Score=50.34 Aligned_cols=65 Identities=22% Similarity=0.418 Sum_probs=48.0
Q ss_pred CCCCCCccccCCCHHHHHHHHHhc-CCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCC
Q psy15244 184 VPIIPGTTEPVTDVDKVKEFCDEV-EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP 262 (1427)
Q Consensus 184 Vpvp~~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIegg 262 (1427)
++.-|.++....+.+++.+.+++. .-=+||||...+-|.|+++++...++.. +.+++||+||+.+
T Consensus 280 f~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yieRP 345 (662)
T KOG2156|consen 280 FGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIERP 345 (662)
T ss_pred cCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhhcc
Confidence 444444445778889988887763 2228999999999999999999876542 4567888888755
|
|
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
Probab=83.83 E-value=77 Score=36.79 Aligned_cols=203 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC--CCCceeeeecccc-cccccCCCcc------
Q psy15244 683 LKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI--PNIPFQMILRGNS-LVGYSNYSPA------ 753 (1427)
Q Consensus 683 ~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~--p~~~~qml~Rg~n-~vgy~~~~~n------ 753 (1427)
..+..+.+.+ .|++.||+| ....+.....+..++ +.++.+++.+ -+..+..++-+.. ...+.+..+.
T Consensus 18 ~~e~l~~~~~--~G~~~VEl~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~ 93 (279)
T TIGR00542 18 WLERLQLAKT--CGFDFVEMS-VDETDDRLSRLDWSR-EQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGL 93 (279)
T ss_pred HHHHHHHHHH--cCCCEEEEe-cCCccchhhccCCCH-HHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHH
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccC------------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 754 -EVGAFCRLASQAGIDIFRVFDPL------------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 754 -vv~~~v~~a~~~Gid~~rif~~~------------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+..++.|.+.|.+.++++..- +-++.++..++.|++.|. .+++- .-+.....+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-------~l~lE---~~~~~~~~t~~ 163 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-------TLAVE---IMDTPFMSSIS 163 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-------EEEEe---eCCCchhcCHH
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
.++++++.+ -.-..-.+-|+.-+..-.. .....++..- +--.|+|.+|..+ ......
T Consensus 164 ~~~~li~~v--~~~~v~~~~D~~h~~~~~~--~~~~~i~~~~-~~i~~vHikD~~~------------------~~~~~~ 220 (279)
T TIGR00542 164 KWLKWDHYL--NSPWFTLYPDIGNLSAWDN--DVQMELQLGI-DKIVAIHLKDTKP------------------GQFKDV 220 (279)
T ss_pred HHHHHHHHc--CCCceEEEeCcChhhhccC--CHHHHHHHhh-hhEEEEEeCCCCC------------------CccCCc
Q ss_pred CCCCCCCcHHHHHHHHHhCCCC
Q psy15244 901 SGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 901 G~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
-=+.|..+...++.+|+..|++
T Consensus 221 p~G~G~id~~~~~~aL~~~gy~ 242 (279)
T TIGR00542 221 PFGEGCVDFERCFKTLKQLNYR 242 (279)
T ss_pred CCCCCccCHHHHHHHHHHhCCc
|
This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.83 E-value=39 Score=38.12 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=99.6
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
.-+..+++.|.+.|..-+.|. -+++...+ ++++.... ..+|... +.|.. ..+.+-=+.-++.+.+.
T Consensus 24 ~~I~~l~~eA~~~~f~avCV~--P~~V~~A~---~~l~g~~~------~~v~tVi--gFP~G-~~~t~~K~~Ea~~ai~~ 89 (228)
T COG0274 24 EDIARLCAEAKEYGFAAVCVN--PSYVPLAK---EALKGSTV------VRVCTVI--GFPLG-ANTTAVKAAEAREAIEN 89 (228)
T ss_pred HHHHHHHHHHHhhCceEEEEC--cchHHHHH---HHhccCCC------eEEEEec--CCCCC-CChHHHHHHHHHHHHHc
Confidence 346778999999996555443 33444333 33332211 2345553 35543 34455445567888899
Q ss_pred CCCEEEEccccCcCC---HHHHHHHHHHHHHHcCC-ce----EEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCC
Q psy15244 833 GAQVLCLKDMAGLLK---PTAAKLLIGSFREKYPN-IL----IHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC 904 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~---P~~~~~lv~~lr~~~p~-ip----i~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~t 904 (1427)
|||.|-+.=..|.++ .+.+++-|+++++..++ ++ |+.-.=++.-+ ...+..|++||||.|-+|..-- +
T Consensus 90 GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~-~~A~~i~~~aGAdFVKTSTGf~---~ 165 (228)
T COG0274 90 GADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEK-RKACEIAIEAGADFVKTSTGFS---A 165 (228)
T ss_pred CCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHH-HHHHHHHHHhCCCEEEcCCCCC---C
Confidence 999887665556544 57788889999988865 23 34444445555 6677789999999999986332 7
Q ss_pred CCCcHHHHHHHHHhCCCCCCCC
Q psy15244 905 SQPAMGTIVSCLENTDKRCGID 926 (1427)
Q Consensus 905 gn~~lE~vv~~L~~~g~~tgid 926 (1427)
+++.+|.+-.+.+..|...|+.
T Consensus 166 ~gAT~edv~lM~~~vg~~vgvK 187 (228)
T COG0274 166 GGATVEDVKLMKETVGGRVGVK 187 (228)
T ss_pred CCCCHHHHHHHHHHhccCceee
Confidence 7888888877777655554443
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.77 E-value=16 Score=44.52 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
++++...+.+.+. -+.+.+.+.++.+++.+. .+-. +.++..+.++++.++++|+|.
T Consensus 103 ~aa~~~~e~~~~~-------~~p~l~~~ii~~vr~a~V---tvki--------------Rl~~~~~~e~a~~l~eAGad~ 158 (369)
T TIGR01304 103 AATRLLQELHAAP-------LKPELLGERIAEVRDSGV---ITAV--------------RVSPQNAREIAPIVVKAGADL 158 (369)
T ss_pred HHHHHHHHcCCCc-------cChHHHHHHHHHHHhcce---EEEE--------------ecCCcCHHHHHHHHHHCCCCE
Confidence 4556566666554 256778888888888764 2221 223357889999999999999
Q ss_pred EEEcccc-------CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 837 LCLKDMA-------GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 837 i~i~Dt~-------G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
|.|-.+. |-..|..+.+++ +++ ++||-. .+ ......++.++++|||.|.
T Consensus 159 I~ihgrt~~q~~~sg~~~p~~l~~~i----~~~-~IPVI~---G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 159 LVIQGTLVSAEHVSTSGEPLNLKEFI----GEL-DVPVIA---GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred EEEeccchhhhccCCCCCHHHHHHHH----HHC-CCCEEE---eC-CCCHHHHHHHHHcCCCEEE
Confidence 9986542 445676555444 345 688753 22 3335667888899999997
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=83.75 E-value=93 Score=36.10 Aligned_cols=223 Identities=10% Similarity=-0.004 Sum_probs=112.6
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CC
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NI 733 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~ 733 (1427)
+=++.|.+--|+.+ ++.++.++.+ .+ .|++.||++.+. ++....-..-++ +.++.+++... +.
T Consensus 7 ~~~~~~~~~~~~~~--------~~~~e~~~~~---~~--~G~~~iEl~~~~-~~~~~~~~~~~~-~~~~~l~~~l~~~gl 71 (283)
T PRK13209 7 QIPLGIYEKALPAG--------ECWLEKLAIA---KT--AGFDFVEMSVDE-SDERLARLDWSR-EQRLALVNALVETGF 71 (283)
T ss_pred cccceeecccCCCC--------CCHHHHHHHH---HH--cCCCeEEEecCc-cccchhccCCCH-HHHHHHHHHHHHcCC
Confidence 33445555444433 4555555554 45 699999997532 111000011122 23445555443 33
Q ss_pred ceeeeeccccc-ccccCCCcc-------hHHHHHHHHHhcCCCEEEEeccCC--------h----HHHHHHHHHHHHHhc
Q psy15244 734 PFQMILRGNSL-VGYSNYSPA-------EVGAFCRLASQAGIDIFRVFDPLN--------S----VPNLVKGMDAVQQVT 793 (1427)
Q Consensus 734 ~~qml~Rg~n~-vgy~~~~~n-------vv~~~v~~a~~~Gid~~rif~~~n--------d----~~~~~~~i~~a~~~G 793 (1427)
.+.+++-+... ..+..-.+. ..+..++.|.+.|++.+++..... + ++.++..++.+++.|
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~G 151 (283)
T PRK13209 72 RVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRAS 151 (283)
T ss_pred ceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34333211110 011111111 245667888899999998753221 0 346677788888888
Q ss_pred CCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ccccCcCCHHHHHHHHHHHHHHcCCceEEEeec
Q psy15244 794 GGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL-KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTH 872 (1427)
Q Consensus 794 ~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i-~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~H 872 (1427)
. .+ ++-- .+.....+.+...++++.+ +-..+.+ -|+.=+..-. ......++. ..+--.++|.+
T Consensus 152 V---~i----~iE~---~~~~~~~~~~~~~~ll~~v---~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHik 215 (283)
T PRK13209 152 V---TL----AFEI---MDTPFMNSISKALGYAHYL---NSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVK 215 (283)
T ss_pred C---EE----EEee---cCCcccCCHHHHHHHHHHh---CCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEec
Confidence 7 22 2221 1112234666666666554 4344444 3654332110 012233432 33556799999
Q ss_pred CCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 873 DMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 873 nd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
|..+- +-+. ..+ +.|..+...++.+|+..|++-.+-+
T Consensus 216 D~~~~-----------~~~~-----~~~--G~G~id~~~i~~~L~~~gy~g~~~~ 252 (283)
T PRK13209 216 DTKPG-----------VFKN-----VPF--GEGVVDFERCFKTLKQSGYCGPYLI 252 (283)
T ss_pred cCCCC-----------CCce-----eCC--CCCccCHHHHHHHHHHcCCCceEEE
Confidence 97531 1111 123 3467889999999999887654444
|
|
| >PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3 | Back alignment and domain information |
|---|
Probab=83.65 E-value=2 Score=50.35 Aligned_cols=67 Identities=27% Similarity=0.358 Sum_probs=55.2
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEE--EEEEcCC-c-eeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVL--IVMSVMK-T-ETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l--~~ieamK-m-e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
....+.||..| ++...++.||.|++||+| ..+-+.- - ..+|+||.+|+|. .....-.|..|+.|+.+
T Consensus 219 ~~~~~~a~~~G-~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v 289 (292)
T PF04952_consen 219 DPEWVRAPAGG-LFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKV 289 (292)
T ss_dssp GCCEEESSSSE-EEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEE
T ss_pred cceeecCCccE-EEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEE
Confidence 45678999999 778999999999999999 6554433 3 3589999999984 67788899999999876
|
5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A .... |
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=83.57 E-value=4.9 Score=48.52 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEcc-ccCcCCHHHHH--------HHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 820 NYYEDLAKQLVESGAQVLCLKD-MAGLLKPTAAK--------LLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Gad~i~i~D-t~G~l~P~~~~--------~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
+...++++...++||+.+.|.| ++|++.|+... ++++.+++..|++++-+|.+.+. ...-.-.+.|+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~ 254 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV 254 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC
Confidence 3456777777889999999999 66677777654 34456666555678899988774 12223345688
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
+.+..--. .++++....+.
T Consensus 255 ~~i~~d~~--------~dl~e~~~~~g 273 (345)
T PLN02433 255 DVIGLDWT--------VDMADARRRLG 273 (345)
T ss_pred CEEEcCCC--------CCHHHHHHHhC
Confidence 87753221 56666655554
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.53 E-value=9.4 Score=44.76 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-Ecccc-CcCCHHHHHHHHHHH
Q psy15244 781 NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC-LKDMA-GLLKPTAAKLLIGSF 858 (1427)
Q Consensus 781 ~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~-i~Dt~-G~l~P~~~~~lv~~l 858 (1427)
+|+..++.|++.|+ -+ + ++. -++.+.+..+++.+++.++..|- +.... -.+....+..++..+
T Consensus 5 ~~k~iL~~A~~~~y---AV-~--AfN---------~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~ 69 (286)
T PRK12738 5 STKYLLQDAQANGY---AV-P--AFN---------IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAY 69 (286)
T ss_pred cHHHHHHHHHHCCc---eE-E--EEE---------eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHH
Confidence 46778888998887 22 2 333 47889999999999999887543 32211 123345677888888
Q ss_pred HHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE--EEecc
Q psy15244 859 REKYPNILIHVHTHDMAGTGVATTLACVKAGADI--VDVAA 897 (1427)
Q Consensus 859 r~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~--VD~av 897 (1427)
.++. ++|+.+|. |.|........|+++|.+- +|+|-
T Consensus 70 a~~~-~VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~ 107 (286)
T PRK12738 70 STTY-NMPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSH 107 (286)
T ss_pred HHHC-CCCEEEEC--CCCCCHHHHHHHHHcCCCeEeecCCC
Confidence 8888 89988776 5566788999999999985 56554
|
|
| >PRK03598 putative efflux pump membrane fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=83.52 E-value=1.3 Score=53.05 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=31.1
Q ss_pred eeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1394 ETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1394 e~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+..|.|+.+|+|++++|++||.|++||+|++|+
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld 75 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELD 75 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEC
Confidence 567999999999999999999999999999986
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=83.51 E-value=12 Score=41.47 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=97.7
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.|.+ .|+..+|+.- -.++..+-++.+++..|+..+..- .| -+ .+
T Consensus 17 ~~~~~a~~~~~al~~--gGi~~iEiT~----------~t~~a~~~I~~l~~~~p~~~vGAG-----TV------~~--~e 71 (196)
T PF01081_consen 17 DDPEDAVPIAEALIE--GGIRAIEITL----------RTPNALEAIEALRKEFPDLLVGAG-----TV------LT--AE 71 (196)
T ss_dssp SSGGGHHHHHHHHHH--TT--EEEEET----------TSTTHHHHHHHHHHHHTTSEEEEE-----S--------S--HH
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEec----------CCccHHHHHHHHHHHCCCCeeEEE-----ec------cC--HH
Confidence 456889999999998 8999999852 245677888999999997654431 11 11 23
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
-++.|.++|.+.+- .+.- -.+.++++++.+. ..-.. ..|+.. +.++.++|++.+
T Consensus 72 ~a~~a~~aGA~Fiv--SP~~----~~~v~~~~~~~~i---~~iPG-------------~~TptE----i~~A~~~G~~~v 125 (196)
T PF01081_consen 72 QAEAAIAAGAQFIV--SPGF----DPEVIEYAREYGI---PYIPG-------------VMTPTE----IMQALEAGADIV 125 (196)
T ss_dssp HHHHHHHHT-SEEE--ESS------HHHHHHHHHHTS---EEEEE-------------ESSHHH----HHHHHHTT-SEE
T ss_pred HHHHHHHcCCCEEE--CCCC----CHHHHHHHHHcCC---cccCC-------------cCCHHH----HHHHHHCCCCEE
Confidence 48899999998742 2222 2445677888898 33322 133333 335668999988
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
-+- -++.+- -...+++|+.-+|++++- -+-|....|+-.=+++|+..+
T Consensus 126 K~F-PA~~~G---G~~~ik~l~~p~p~~~~~----ptGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 126 KLF-PAGALG---GPSYIKALRGPFPDLPFM----PTGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp EET-TTTTTT---HHHHHHHHHTTTTT-EEE----EBSS--TTTHHHHHTSTTBSE
T ss_pred EEe-cchhcC---cHHHHHHHhccCCCCeEE----EcCCCCHHHHHHHHhCCCEEE
Confidence 764 122222 245788888888888764 345666778888889997655
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=83.47 E-value=46 Score=42.54 Aligned_cols=137 Identities=13% Similarity=0.081 Sum_probs=79.5
Q ss_pred ccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 741 GNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 741 g~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
|....|. .++.+...+.++...+.|++.|-+-.+...-... ..++.+.+.+. .+..+ .++ +...+
T Consensus 15 G~Q~~g~-~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~-~~v~~i~~~~~---~~~i~-a~~---------r~~~~ 79 (513)
T PRK00915 15 GEQSPGA-SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDF-EAVKRIARTVK---NSTVC-GLA---------RAVKK 79 (513)
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHH-HHHHHHHhhCC---CCEEE-EEc---------cCCHH
Confidence 3334444 4555557778888889999999996644322221 22333333333 11111 111 33445
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCc--------CCHHH----HHHHHHHHHHHcCCceEEEeecC----CcchHHHHHHH
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGL--------LKPTA----AKLLIGSFREKYPNILIHVHTHD----MAGTGVATTLA 884 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~--------l~P~~----~~~lv~~lr~~~p~ipi~~H~Hn----d~GlA~An~la 884 (1427)
.+...++.+.++|+++|.+...+.- .++++ +.+.|+.+|+. +..+.|.+=| +....+..+-+
T Consensus 80 did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r~d~~~l~~~~~~ 157 (513)
T PRK00915 80 DIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATRTDLDFLCRVVEA 157 (513)
T ss_pred HHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCHHHHHHHHHH
Confidence 5555666677889999888765521 22333 34556666655 4566676633 34556667778
Q ss_pred HHHhcCCEEE
Q psy15244 885 CVKAGADIVD 894 (1427)
Q Consensus 885 Ai~AGad~VD 894 (1427)
+.++||+.|.
T Consensus 158 ~~~~Ga~~i~ 167 (513)
T PRK00915 158 AIDAGATTIN 167 (513)
T ss_pred HHHcCCCEEE
Confidence 8899999874
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=83.46 E-value=86 Score=35.51 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhcCCccEEec--cCCCchhhhhhccccCh--HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 682 DLKKVSPFVANRFNNLYSLEM--WGGAVSHTCLKFLKECP--WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~--~ggatfd~~~rfl~e~p--~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
+..+.++.+.+ .|+..+-+ -.+. |...-- .+.++.+++. ++..+...+-- +.| ..
T Consensus 21 ~l~~~l~~~~~--~g~~~ihld~~d~~-------f~~~~~~g~~~~~~l~~~-~~~~~~vhlmv-------~~p----~d 79 (229)
T PLN02334 21 NLAEEAKRVLD--AGADWLHVDVMDGH-------FVPNLTIGPPVVKALRKH-TDAPLDCHLMV-------TNP----ED 79 (229)
T ss_pred HHHHHHHHHHH--cCCCEEEEecccCC-------cCCccccCHHHHHHHHhc-CCCcEEEEecc-------CCH----HH
Confidence 45555666666 57776654 1111 111111 2567777766 55543333211 112 34
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC-CCE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG-AQV 836 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G-ad~ 836 (1427)
+++.+.++|.|.+-+-.....-+.....++.++..|. .+..++ +| +++ .+.++.+.+.| +|.
T Consensus 80 ~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~---~iGls~-------~~----~t~---~~~~~~~~~~~~~Dy 142 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGM---KAGVVL-------NP----GTP---VEAVEPVVEKGLVDM 142 (229)
T ss_pred HHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCC---eEEEEE-------CC----CCC---HHHHHHHHhccCCCE
Confidence 6888899999998333331011345677788888887 554432 22 121 13344555554 897
Q ss_pred EEE---c-cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHH
Q psy15244 837 LCL---K-DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTI 912 (1427)
Q Consensus 837 i~i---~-Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~v 912 (1427)
|.+ - .+.|-..+....+.++.+++..+++||.+ +-|.-..|.-..+++|||.|=+. + .-.+.++.++.
T Consensus 143 i~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vvvg-s---ai~~~~d~~~~ 214 (229)
T PLN02334 143 VLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIVAG-S---AVFGAPDYAEV 214 (229)
T ss_pred EEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEEEC-h---HHhCCCCHHHH
Confidence 733 2 23343344566677888888766677655 44777889999999999998333 1 23344555555
Q ss_pred HHHHH
Q psy15244 913 VSCLE 917 (1427)
Q Consensus 913 v~~L~ 917 (1427)
+..|+
T Consensus 215 ~~~l~ 219 (229)
T PLN02334 215 ISGLR 219 (229)
T ss_pred HHHHH
Confidence 54443
|
|
| >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein | Back alignment and domain information |
|---|
Probab=83.37 E-value=1 Score=56.34 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=36.9
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.+-.+-...|..+..|.... | .++.+|+|.+|+|++||.|++||+|+.|+
T Consensus 41 ~~~~~~v~a~G~v~p~~~~~~-v---------q~~~~G~v~~i~V~eG~~V~~G~~L~~ld 91 (457)
T TIGR01000 41 AKKEIVIRTTGTIEPAKILSK-I---------QSTSNNAIKENYLKENKFVKKGDLLVVYD 91 (457)
T ss_pred EeeeEEEEEeEEEEecCceEE-E---------EcCCCcEEEEEEcCCCCEecCCCEEEEEC
Confidence 344445555555555555322 2 35788999999999999999999999986
|
This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.37 E-value=9.4 Score=45.71 Aligned_cols=70 Identities=27% Similarity=0.363 Sum_probs=52.4
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
..+.++.+.++|++.|.| |++. ..+....++|+.+|+.+|+++|.+ +|- .....+..++++|||.|.+.+
T Consensus 95 ~~~~~~~l~eagv~~I~v-d~~~-G~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 95 DKERAEALVEAGVDVIVI-DSAH-GHSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECC
Confidence 456788889999998876 3332 244678889999999998888876 222 334666888999999998754
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=83.36 E-value=22 Score=44.34 Aligned_cols=120 Identities=12% Similarity=0.149 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHH-----HHCC----CCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHH
Q psy15244 817 YSLNYYEDLAKQL-----VESG----AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVK 887 (1427)
Q Consensus 817 ~~~~~~~~~a~~l-----~~~G----ad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~ 887 (1427)
.+.+.+.+.++.+ ...| ||.|+|....| .|+.+...|+.+++.. ++||.+-+-| ...+.+|++
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~-dvPLSIDT~d-----pevleaAle 173 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETT-DLPLILCSED-----PAVLKAALE 173 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhc-CCCEEEeCCC-----HHHHHHHHH
Confidence 4556777777766 4445 99999999988 8999999999999887 8999998744 567789999
Q ss_pred hcCC---EEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccccc
Q psy15244 888 AGAD---IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954 (1427)
Q Consensus 888 AGad---~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~ 954 (1427)
+|++ .|.+.- .-++++++......+....+....+..+.+.+++....-+ ..+++--
T Consensus 174 agad~~plI~Sat--------~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~~~~~~GI--~dIILDP 233 (450)
T PRK04165 174 VVADRKPLLYAAT--------KENYEEMAELAKEYNCPLVVKAPNLEELKELVEKLQAAGI--KDLVLDP 233 (450)
T ss_pred hcCCCCceEEecC--------cchHHHHHHHHHHcCCcEEEEchhHHHHHHHHHHHHHcCC--CcEEECC
Confidence 9998 443321 1356677766666543322211113334444444433333 4555533
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=83.16 E-value=39 Score=40.41 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=81.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..++.+++.++++.+.+ .|+..|-+.||-- +++.+-.+-++.+++..+...+.+...|. ..
T Consensus 47 ~~ls~eei~~~i~~~~~--~gi~~I~~tGGEP------ll~~~l~~li~~i~~~~~~~~i~itTNG~-----------ll 107 (331)
T PRK00164 47 ELLSLEEIERLVRAFVA--LGVRKVRLTGGEP------LLRKDLEDIIAALAALPGIRDLALTTNGY-----------LL 107 (331)
T ss_pred ccCCHHHHHHHHHHHHH--CCCCEEEEECCCC------cCccCHHHHHHHHHhcCCCceEEEEcCch-----------hH
Confidence 35889999999998887 6999999888753 34555445556665542223344433331 12
Q ss_pred HHHHHHHHhcCCCEEEEec-cCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFD-PLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~-~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.++++...++|++.+.|.. +++ .++.+.++++.+++.|.. .+....... + ..+.+.+.
T Consensus 108 ~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~--~v~i~~vv~-----~---g~n~~ei~ 177 (331)
T PRK00164 108 ARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLT--PVKVNAVLM-----K---GVNDDEIP 177 (331)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCC--cEEEEEEEE-----C---CCCHHHHH
Confidence 3457777889999877764 322 245666777777777751 222222211 1 24556777
Q ss_pred HHHHHHHHCCCCE
Q psy15244 824 DLAKQLVESGAQV 836 (1427)
Q Consensus 824 ~~a~~l~~~Gad~ 836 (1427)
++++.+.+.|++.
T Consensus 178 ~l~~~~~~~gv~v 190 (331)
T PRK00164 178 DLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHHHhCCCeE
Confidence 7888788888763
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=83.11 E-value=76 Score=37.68 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCc-CCHHHHHHHHHHHHHHcCCceEEEee---c------CCcchHHHHHHHH
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGL-LKPTAAKLLIGSFREKYPNILIHVHT---H------DMAGTGVATTLAC 885 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~-l~P~~~~~lv~~lr~~~p~ipi~~H~---H------nd~GlA~An~laA 885 (1427)
..+++.+++.++++.+.|++.|+|.+-... ..++.+.++++.+|+..|++. +|+ + ...|+...-.++.
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~--~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVH--IHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCce--EEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999842222 455778999999999975444 332 1 2355555555544
Q ss_pred H-HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHH
Q psy15244 886 V-KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDY 964 (1427)
Q Consensus 886 i-~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~ 964 (1427)
+ +||++.+. +.| .|.+-..+...-...+...+...++.+...+ .|+++. ..-++|-+--....-.|
T Consensus 113 LkeAGl~~i~----~~g-------~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~-~Gi~~~-s~~iiG~~Et~ed~~~~ 179 (309)
T TIGR00423 113 LKKAGLDSMP----GTG-------AEILDDSVRRKICPNKLSSDEWLEVIKTAHR-LGIPTT-ATMMFGHVENPEHRVEH 179 (309)
T ss_pred HHHcCCCcCC----CCc-------chhcCHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCCce-eeEEecCCCCHHHHHHH
Confidence 4 58998774 111 1222111111111112233333333333322 244333 22355544211222233
Q ss_pred HHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCCCccccchhhHHH
Q psy15244 965 SSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGLDFEDVKRAYRTANFLLGDIIKCTPSSKVVAD 1043 (1427)
Q Consensus 965 ~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~ 1043 (1427)
...+.+....+..|. .-+-+- ..+|+- -+..+ ..-.....|.++.++-.|-.|..++.++-+--..|.
T Consensus 180 l~~lr~l~~~~~~f~--------~fiP~~f~~~~t~--~l~~~-~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~~~l~~ 248 (309)
T TIGR00423 180 LLRIRKIQEKTGGFT--------EFIPLPFQPENNP--YLEGE-VRKGASGIDDLKVIAISRILLNNIRNIQASWVKLGL 248 (309)
T ss_pred HHHHHhhchhhCCee--------eEEeeeecCCCCh--hhccC-CCCCCCHHHHHHHHHHHHHhcCCCccceecchhcCH
Confidence 333333332333332 111111 113321 01100 001237788999999999999877766665544443
Q ss_pred H-HHHHHH---cCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhC
Q psy15244 1044 L-AIFMTQ---EKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLD 1096 (1427)
Q Consensus 1044 ~-a~~~v~---~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~ 1096 (1427)
. ++.... |++.+ + ..+++ +.=..| -+.|++.=++++.+.+-+
T Consensus 249 ~~~~~~l~~Gand~~g--------t-~~~e~-v~~~ag-~~~~~~~~~~~l~~~~~~ 294 (309)
T TIGR00423 249 KLAQVALEFGANDLGG--------T-LMEEN-ISKAAG-AKSGVGLTVEELIEAIKD 294 (309)
T ss_pred HHHHHHHhCCCccCCc--------c-cccce-eccccC-CCCCCCCCHHHHHHHHHH
Confidence 2 333333 33332 1 23333 222334 234445556677665543
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=12 Score=44.33 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCc--CCHHHHHHHHHHH
Q psy15244 781 NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGL--LKPTAAKLLIGSF 858 (1427)
Q Consensus 781 ~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~--l~P~~~~~lv~~l 858 (1427)
++++.++.|++.++ +.-+|. .++.+.+..+++.+++.+...|--...... +-...+..+++.+
T Consensus 4 ~~k~lL~~A~~~~y------aV~AfN---------~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ 68 (307)
T PRK05835 4 KGNEILLKAHKEGY------GVGAFN---------FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIM 68 (307)
T ss_pred CHHHHHHHHHHCCc------eEEEEE---------ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHH
Q ss_pred HHHcCCceEEEeecCCcchHHHHHHHHHHhcCC--EEEeccccC
Q psy15244 859 REKYPNILIHVHTHDMAGTGVATTLACVKAGAD--IVDVAADSM 900 (1427)
Q Consensus 859 r~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad--~VD~av~Gm 900 (1427)
.+..+.+|+.+|. |.|.-......|+++|.+ ++|+|-.++
T Consensus 69 a~~~~~VPValHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ 110 (307)
T PRK05835 69 CERYPHIPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAF 110 (307)
T ss_pred HHhcCCCeEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCH
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1427 | ||||
| 3ho8_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 0.0 | ||
| 3ho8_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 1e-108 | ||
| 3ho8_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 2e-08 | ||
| 3bg5_A | 1173 | Crystal Structure Of Staphylococcus Aureus Pyruvate | 0.0 | ||
| 3bg5_A | 1173 | Crystal Structure Of Staphylococcus Aureus Pyruvate | 1e-108 | ||
| 3bg5_A | 1173 | Crystal Structure Of Staphylococcus Aureus Pyruvate | 2e-08 | ||
| 4hnt_A | 1173 | Crystal Structure Of F403a Mutant Of S. Aureus Pyru | 0.0 | ||
| 4hnt_A | 1173 | Crystal Structure Of F403a Mutant Of S. Aureus Pyru | 1e-108 | ||
| 4hnt_A | 1173 | Crystal Structure Of F403a Mutant Of S. Aureus Pyru | 2e-08 | ||
| 3hb9_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 0.0 | ||
| 3hb9_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 1e-107 | ||
| 3hb9_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 1e-08 | ||
| 4hnu_A | 1173 | Crystal Structure Of K442e Mutant Of S. Aureus Pyru | 0.0 | ||
| 4hnu_A | 1173 | Crystal Structure Of K442e Mutant Of S. Aureus Pyru | 1e-108 | ||
| 4hnu_A | 1173 | Crystal Structure Of K442e Mutant Of S. Aureus Pyru | 2e-08 | ||
| 3hbl_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 0.0 | ||
| 3hbl_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 1e-107 | ||
| 3hbl_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 2e-08 | ||
| 4hnv_A | 1173 | Crystal Structure Of R54e Mutant Of S. Aureus Pyruv | 0.0 | ||
| 4hnv_A | 1173 | Crystal Structure Of R54e Mutant Of S. Aureus Pyruv | 1e-108 | ||
| 4hnv_A | 1173 | Crystal Structure Of R54e Mutant Of S. Aureus Pyruv | 2e-08 | ||
| 2qf7_A | 1165 | Crystal Structure Of A Complete Multifunctional Pyr | 0.0 | ||
| 2qf7_A | 1165 | Crystal Structure Of A Complete Multifunctional Pyr | 2e-10 | ||
| 3tw7_A | 1165 | Structure Of Rhizobium Etli Pyruvate Carboxylase T8 | 0.0 | ||
| 3tw7_A | 1165 | Structure Of Rhizobium Etli Pyruvate Carboxylase T8 | 2e-10 | ||
| 3bg3_A | 718 | Crystal Structure Of Human Pyruvate Carboxylase (Mi | 1e-144 | ||
| 3bg3_A | 718 | Crystal Structure Of Human Pyruvate Carboxylase (Mi | 5e-15 | ||
| 3bg9_A | 718 | Crystal Structure Of Human Pyruvate Carboxylase (Mi | 1e-143 | ||
| 3bg9_A | 718 | Crystal Structure Of Human Pyruvate Carboxylase (Mi | 4e-14 | ||
| 2dzd_A | 461 | Crystal Structure Of The Biotin Carboxylase Domain | 1e-128 | ||
| 1ulz_A | 451 | Crystal Structure Of The Biotin Carboxylase Subunit | 1e-110 | ||
| 2vpq_A | 451 | Crystal Structure Of Biotin Carboxylase From S. Aur | 1e-100 | ||
| 2vqd_A | 464 | Crystal Structure Of Biotin Carboxylase From Pseudo | 4e-94 | ||
| 3u9s_A | 655 | Crystal Structure Of P. Aeruginosa 3-methylcrotonyl | 1e-93 | ||
| 3n6r_A | 681 | Crystal Structure Of The Holoenzyme Of Propionyl-co | 2e-92 | ||
| 3rup_B | 452 | Crystal Structure Of E.Coli Biotin Carboxylase In C | 1e-91 | ||
| 3jzf_A | 486 | Crystal Structure Of Biotin Carboxylase From E. Col | 1e-91 | ||
| 1bnc_A | 449 | Three-Dimensional Structure Of The Biotin Carboxyla | 1e-91 | ||
| 3g8c_A | 444 | Crystal Stucture Of Biotin Carboxylase In Complex W | 1e-91 | ||
| 2gpw_A | 469 | Crystal Structure Of The Biotin Carboxylase Subunit | 1e-91 | ||
| 1dv2_A | 452 | The Structure Of Biotin Carboxylase, Mutant E288k, | 3e-91 | ||
| 2gps_A | 469 | Crystal Structure Of The Biotin Carboxylase Subunit | 4e-91 | ||
| 3g8d_A | 444 | Crystal Structure Of The Biotin Carboxylase Subunit | 5e-91 | ||
| 3rv4_A | 452 | Crystal Structure Of E.Coli Biotin Carboxylase R16e | 6e-91 | ||
| 3ouz_A | 446 | Crystal Structure Of Biotin Carboxylase-Adp Complex | 1e-82 | ||
| 3va7_A | 1236 | Crystal Structure Of The Kluyveromyces Lactis Urea | 4e-81 | ||
| 2nx9_A | 464 | Crystal Structure Of The Carboxyltransferase Domain | 2e-56 | ||
| 2yl2_A | 540 | Crystal Structure Of Human Acetyl-Coa Carboxylase 1 | 1e-49 | ||
| 3gid_A | 540 | The Biotin Carboxylase (Bc) Domain Of Human Acetyl- | 1e-49 | ||
| 3jrw_A | 587 | Phosphorylated Bc Domain Of Acc2 Length = 587 | 2e-49 | ||
| 3jrx_A | 587 | Crystal Structure Of The Bc Domain Of Acc2 In Compl | 2e-49 | ||
| 2hjw_A | 573 | Crystal Structure Of The Bc Domain Of Acc2 Length = | 2e-49 | ||
| 1rqe_A | 539 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 2e-45 | ||
| 1w93_A | 553 | Crystal Structure Of Biotin Carboxylase Domain Of A | 2e-44 | ||
| 1w96_A | 554 | Crystal Structure Of Biotin Carboxylase Domain Of A | 2e-44 | ||
| 1s3h_A | 539 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 3e-44 | ||
| 1u5j_A | 539 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 3e-44 | ||
| 1rr2_A | 473 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 7e-44 | ||
| 1rqh_A | 472 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 7e-44 | ||
| 1rqb_A | 539 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 9e-37 | ||
| 2cqy_A | 108 | Solution Structure Of B Domain From Human Propionyl | 1e-10 | ||
| 1a9x_A | 1073 | Carbamoyl Phosphate Synthetase: Caught In The Act O | 6e-09 | ||
| 1a9x_A | 1073 | Carbamoyl Phosphate Synthetase: Caught In The Act O | 5e-05 | ||
| 1ce8_A | 1073 | Carbamoyl Phosphate Synthetase From Escherichis Col | 3e-08 | ||
| 1ce8_A | 1073 | Carbamoyl Phosphate Synthetase From Escherichis Col | 5e-05 | ||
| 1jdb_B | 1073 | Carbamoyl Phosphate Synthetase From Escherichia Col | 3e-08 | ||
| 1jdb_B | 1073 | Carbamoyl Phosphate Synthetase From Escherichia Col | 5e-05 | ||
| 1ydo_A | 307 | Crystal Structure Of The Bacillis Subtilis Hmg-Coa | 4e-05 | ||
| 3vot_A | 425 | Crystal Structure Of L-Amino Acid Ligase From Bacil | 4e-04 | ||
| 3ble_A | 337 | Crystal Structure Of The Catalytic Domain Of Licms | 7e-04 | ||
| 2cw6_A | 298 | Crystal Structure Of Human Hmg-Coa Lyase: Insights | 9e-04 |
| >pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150 | Back alignment and structure |
|
| >pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150 | Back alignment and structure |
|
| >pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150 | Back alignment and structure |
|
| >pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150 | Back alignment and structure |
|
| >pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
|
| >pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165 | Back alignment and structure |
|
| >pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165 | Back alignment and structure |
|
| >pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165 | Back alignment and structure |
|
| >pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165 | Back alignment and structure |
|
| >pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The Biotin Carboxylase Domain At The N-Terminus) Length = 718 | Back alignment and structure |
|
| >pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The Biotin Carboxylase Domain At The N-Terminus) Length = 718 | Back alignment and structure |
|
| >pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The Biotin Carboxylase Domain At The N-Terminus) F1077a Mutant Length = 718 | Back alignment and structure |
|
| >pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The Biotin Carboxylase Domain At The N-Terminus) F1077a Mutant Length = 718 | Back alignment and structure |
|
| >pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of Pyruvate Carboxylase Length = 461 | Back alignment and structure |
|
| >pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of Pyruvate Carboxylase Length = 451 | Back alignment and structure |
|
| >pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus Complexed With Amppnp Length = 451 | Back alignment and structure |
|
| >pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas Aeruginosa Complexed With Ampcp Length = 464 | Back alignment and structure |
|
| >pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex Length = 655 | Back alignment and structure |
|
| >pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681 | Back alignment and structure |
|
| >pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In Complex With Benzimidazoles Series Length = 486 | Back alignment and structure |
|
| >pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase Subunit Of Acetyl-Coa Carboxylase Length = 449 | Back alignment and structure |
|
| >pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With Biotin, Bicarbonate, Adp And Mg Ion Length = 444 | Back alignment and structure |
|
| >pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 | Back alignment and structure |
|
| >pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 | Back alignment and structure |
|
| >pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 | Back alignment and structure |
|
| >pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli Length = 444 | Back alignment and structure |
|
| >pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From Campylobacter Jejuni Length = 446 | Back alignment and structure |
|
| >pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea Carboxylase Length = 1236 | Back alignment and structure |
|
| >pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae Length = 464 | Back alignment and structure |
|
| >pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain Length = 540 | Back alignment and structure |
|
| >pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa Carboxylase 2 (Acc2) In Complex With Soraphen A Length = 540 | Back alignment and structure |
|
| >pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2 Length = 587 | Back alignment and structure |
|
| >pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With Soraphen A Length = 587 | Back alignment and structure |
|
| >pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 Length = 573 | Back alignment and structure |
|
| >pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit Bound To Oxaloacetate Length = 539 | Back alignment and structure |
|
| >pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae Length = 553 | Back alignment and structure |
|
| >pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae In Complex With Soraphen A Length = 554 | Back alignment and structure |
|
| >pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit A59t Length = 539 | Back alignment and structure |
|
| >pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit, Met186ile Length = 539 | Back alignment and structure |
|
| >pdb|1RQB|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit Length = 539 | Back alignment and structure |
|
| >pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa Carboxylase Alpha Subunit Length = 108 | Back alignment and structure |
|
| >pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073 | Back alignment and structure |
|
| >pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073 | Back alignment and structure |
|
| >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 | Back alignment and structure |
|
| >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 | Back alignment and structure |
|
| >pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073 | Back alignment and structure |
|
| >pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073 | Back alignment and structure |
|
| >pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase, Northeast Structural Genomics Target Sr181. Length = 307 | Back alignment and structure |
|
| >pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus Licheniformis Length = 425 | Back alignment and structure |
|
| >pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In Complexed With Malonate Length = 337 | Back alignment and structure |
|
| >pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into Catalysis And The Molecular Basis For Hydroxymethylglutaric Aciduria Length = 298 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1427 | |||
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 0.0 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 1e-42 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 0.0 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 3e-41 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 0.0 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 0.0 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 7e-39 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 0.0 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 0.0 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 0.0 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 0.0 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 0.0 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 4e-22 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 0.0 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 2e-21 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 0.0 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 0.0 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 6e-17 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 0.0 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 0.0 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 0.0 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 1e-179 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 4e-45 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 2e-31 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 9e-31 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 8e-29 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 9e-29 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 7e-28 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 1e-26 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 5e-26 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 2e-24 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 4e-17 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 3e-15 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 6e-15 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 2e-14 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 1e-13 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 2e-13 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 3e-13 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 5e-13 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 7e-13 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 9e-13 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 1e-12 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 1e-12 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 1e-11 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 4e-11 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 5e-11 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 6e-11 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 7e-11 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 7e-11 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 1e-10 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 2e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 9e-10 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 1e-09 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 1e-09 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 2e-09 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 3e-09 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 4e-09 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 8e-09 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 1e-08 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 2e-08 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 2e-08 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 2e-08 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 2e-08 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 2e-08 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 2e-08 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 3e-08 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 6e-08 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 6e-08 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 9e-08 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 1e-07 | |
| 3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase comp | 6e-07 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 1e-06 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 1e-06 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 2e-06 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 2e-06 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 2e-06 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 2e-06 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 1e-05 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 6e-05 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 2e-04 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 2e-04 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 3e-04 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 4e-04 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 7e-04 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 7e-04 |
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 | Back alignment and structure |
|---|
Score = 1378 bits (3569), Expect = 0.0
Identities = 466/1211 (38%), Positives = 661/1211 (54%), Gaps = 171/1211 (14%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
K ++K+L+ANR E+AIR+ RA E+ I +V IYS +DK S HR K D+++LVG + P
Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
+YLNI II +AK NVDAIHPGYGFLSE E FA+ G++FIGP L GDKV
Sbjct: 62 SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVK 121
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR A+KAD+P+IPGT P+ + KEF +E FP+++KA GGGG+GMR+V + +E
Sbjct: 122 ARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELE 181
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
+ F RA+SEA SFG ++ +E+YID P+HIEVQ++GD++G++VHL+ERDCS+QRR+QKV
Sbjct: 182 DAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKV 241
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
+++AP+ +S ++R I + +++L +++ Y NAGTVEFL+ D F+FIEVNPR+QVEHT
Sbjct: 242 VEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSG-DEFFFIEVNPRVQVEHT 300
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLC---QEKITPQGCAIQCHLRTEDPKRNFQPST 411
++E +TGID+V++QI +A G L + Q+ IT G AIQC + TEDP +F P T
Sbjct: 301 ITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDT 360
Query: 412 GRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQ 471
G + + G+R+D+ + G +ISP YDSLL K+ H ++K + EKM R+L E +
Sbjct: 361 GTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMR 420
Query: 472 VSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531
+ GV TN+PFL+NV +KKF SG+ T FI++ P+L + R K L +IG +
Sbjct: 421 IRGVKTNIPFLINVMKNKKFTSGDY-TTKFIEETPELFDIQPSLD-RGTKTLEYIGNVTI 478
Query: 532 NGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQAN 591
NG KP I K +
Sbjct: 479 NGFPNVEK-RPKPDYELASI----------------------------PTVSSSKIASFS 509
Query: 592 GYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVN 651
G ++LL +G V+K V
Sbjct: 510 GTKQLLDEVGPKGVAEWVKKQDDV------------------------------------ 533
Query: 652 SVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTC 711
LLTDTTFRDAHQSLLATRVRT D+ ++ A+ F + +SLEMWGGA
Sbjct: 534 --------LLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVA 585
Query: 712 LKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771
FLKE PWERL LR+ IPN+ FQM+LR ++ VGY NY + F + +++AGID+FR
Sbjct: 586 YNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFR 645
Query: 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK-KKYSLNYYEDLAKQLV 830
+FD LN V + +AVQ+ G I E TICY GD+ NP + Y+L YY LAK+L
Sbjct: 646 IFDSLNWVDQMKVANEAVQE-AGK--ISEGTICYTGDILNPERSNIYTLEYYVKLAKELE 702
Query: 831 ESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGA 890
G +L +KDMAGLLKP AA LIG + ++ IH+HTHD +G G+ T + AG
Sbjct: 703 REGFHILAIKDMAGLLKPKAAYELIGELKSA-VDLPIHLHTHDTSGNGLLTYKQAIDAGV 761
Query: 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950
DI+D A SMSG+ SQP+ ++ L +
Sbjct: 762 DIIDTAVASMSGLTSQPSANSLYYALNGFPR----------------------------- 792
Query: 951 LWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSF 1010
D+ + S YW VR Y+ FE D+K+ ++E Y +E+PGGQY+NL + S
Sbjct: 793 --HLRTDIEGMESLSHYWSTVRTYYSDFES-DIKSPNTEIYQHEMPGGQYSNLSQQAKSL 849
Query: 1011 GLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFP 1068
GL F++VK YR NFL GDI+K PSSKVV D+A++M Q L + V+ + K+ FP
Sbjct: 850 GLGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFP 909
Query: 1069 KSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKL 1128
+SV FF+G IG+P GF K LQ +L + R E+
Sbjct: 910 ESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALT-ARPGEYLE----------------- 951
Query: 1129 IFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAE---FDPIMACDCRENEPVKMNELI 1185
PVD F + E P+ D ++ ++
Sbjct: 952 -----------------PVD-------FEKVRELLEEEQQGPVTEQDI-------ISYVL 980
Query: 1186 FPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDH 1245
+PK +++++ R+++G + L T F G GE E G + +ISE +++
Sbjct: 981 YPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISE-PDEN 1039
Query: 1246 GERTVFFLYNG 1256
G RT+++ NG
Sbjct: 1040 GNRTIYYAMNG 1050
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 1e-42
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNK 1342
F G GE E G + +ISE +++G RT+++ NGQ R + D+N
Sbjct: 1004 PTFFFGMRNGETVEIEIDKGKRLIIKLETISE-PDENGNRTIYYAMNGQARRIYIKDENV 1062
Query: 1343 AKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASAD 1402
++ KAD IGA MPG++ EVKV VG+ VK N L++ MK ET I A D
Sbjct: 1063 HTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFD 1122
Query: 1403 GVVKEIFVEVGGQVAQNDLVVVLD 1426
GV+K++ V G +A DL++ ++
Sbjct: 1123 GVIKQVTVNNGDTIATGDLLIEIE 1146
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 | Back alignment and structure |
|---|
Score = 1367 bits (3539), Expect = 0.0
Identities = 452/1215 (37%), Positives = 642/1215 (52%), Gaps = 172/1215 (14%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG----- 109
+ KIL+ANRSE+AIRV RA NE+GIK+V I++E+DK + HR K D+++ VG+G
Sbjct: 12 GPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLAR 71
Query: 110 -MPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKT 168
+ P+ +YL+I E+I +AK + DAIHPGYG LSE +F A AG+ FIGP + ++
Sbjct: 72 DLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQ 131
Query: 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
LG+KV AR+ A+ VP++P T D+ +V + + +PV+LKA++GGGGRGMR++
Sbjct: 132 LGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIR 191
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288
++ + + A+ EA+A+FGKD++ +EK ++R RH+E QILGD +G+VVHL+ERDCS+Q
Sbjct: 192 SEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQ 251
Query: 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDD-NFYFIEVNP 347
RR QKV++ APA +S + R + S+++A + Y AGTVE+L+D D FYFIEVNP
Sbjct: 252 RRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNP 311
Query: 348 RLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLC---QEKITPQGCAIQCHLRTEDPK 404
R+QVEHT++E +TGID+V++QI I G ++ QE I G A+QC + TEDP+
Sbjct: 312 RIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPE 371
Query: 405 RNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMR 464
NF P GR+ + + GIR+D Y G I+ YD LL K+ + +M
Sbjct: 372 HNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMD 431
Query: 465 RALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILR 524
RAL E ++ GV TNL FL + KF T FID P+L ++ Q R K+L
Sbjct: 432 RALREFRIRGVATNLTFLEAIIGHPKFRDNSY-TTRFIDTTPELFQQVKRQD-RATKLLT 489
Query: 525 FIGETLVNG-PMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKY 583
++ + VNG P PV+ Y
Sbjct: 490 YLADVTVNGHPEAKDRPKPLENAARPVVP------------------------------Y 519
Query: 584 LIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVM 643
+G ++LL +G +F +R K V
Sbjct: 520 ANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRV---------------------------- 551
Query: 644 MGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMW 703
LLTDTT RD HQSLLATR+RTYD+ +++ ++ NL SLE W
Sbjct: 552 ----------------LLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECW 595
Query: 704 GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLAS 763
GGA ++FL E PWERLA +RE PN+ QM+LRG + VGY+NY V F R A+
Sbjct: 596 GGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAA 655
Query: 764 QAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823
+ GID+FRVFD LN V N+ MDA+ + + EA ICY GD+ N + KY L YY
Sbjct: 656 KGGIDLFRVFDCLNWVENMRVSMDAIAE-ENK--LCEAAICYTGDILNSARPKYDLKYYT 712
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
+LA +L ++GA ++ +KDMAGLLKP AAK+L + RE + IH HTHD +G AT L
Sbjct: 713 NLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREA-TGLPIHFHTHDTSGIAAATVL 771
Query: 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVREL 943
A V+AG D VD A D++SG SQP +G+IV L +++
Sbjct: 772 AAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSER---------------------- 809
Query: 944 YAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNL 1003
G+D + S YW VR YA FE DLK +SE YL+E+PGGQ+TNL
Sbjct: 810 ---------DPGLDPAWIRRISFYWEAVRNQYAAFES-DLKGPASEVYLHEMPGGQFTNL 859
Query: 1004 KFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMEN 1061
K + S GL+ + V +AY AN + GDI+K TPSSKVV D+A+ M + L+ DV+
Sbjct: 860 KEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSP 919
Query: 1062 ADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDE 1121
++ FP+SV +G +G+P G+P+ LQ+K L + R
Sbjct: 920 DREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKG-EKPYTVRPGSLLK---------- 968
Query: 1122 PFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKM 1181
D A + + + + + E
Sbjct: 969 ------------------------EAD-------LDAE--RKVIEKKLEREVSDFEFA-- 993
Query: 1182 NELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEH 1241
+ L++PK F D +GPV LPT + G GEE + + G T + ++S
Sbjct: 994 SYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSA- 1052
Query: 1242 LNDHGERTVFFLYNG 1256
+ G TVFF NG
Sbjct: 1053 TDSQGMVTVFFELNG 1067
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-41
Identities = 53/144 (36%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 1286 RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKN- 1341
+ G GEE + + G T + ++S + G TVFF NGQ R + D+
Sbjct: 1021 PAYFYGLADGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAH 1079
Query: 1342 KAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASA 1401
A +R KA+ A +GAPMPG I V V GQ V DVL+ + MK ET IHA
Sbjct: 1080 GATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEK 1139
Query: 1402 DGVVKEIFVEVGGQVAQNDLVVVL 1425
DG + E+ V+ G Q+ DL+ V
Sbjct: 1140 DGTIAEVLVKAGDQIDAKDLLAVY 1163
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461 | Back alignment and structure |
|---|
Score = 738 bits (1909), Expect = 0.0
Identities = 241/459 (52%), Positives = 320/459 (69%), Gaps = 5/459 (1%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVA 114
+ + K+L+ANR E+AIRV RAC E+GI++V IYS++D S HR K D+A+LVG+G P+
Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63
Query: 115 AYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVL 174
AYL+I II IAK ++VDAIHPGYGFLSE FAK G+ FIGP N L GDKV
Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVK 123
Query: 175 ARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIE 234
AR AA+ A +P+IPG+ PV ++ V F + +P+I+KAA GGGGRGMR+V +K ++
Sbjct: 124 ARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVK 183
Query: 235 ENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294
E F+RA+SEA A+FG D++ VEK I+ P+HIEVQILGD G++VHLYERDCS+QRR+QKV
Sbjct: 184 EAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKV 243
Query: 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354
+++AP+ +S +R I E +V+L +S+GY NAGTVEFL+ D FYFIEVNPR+QVEHT
Sbjct: 244 VEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPRIQVEHT 302
Query: 355 LSEEITGIDVVQSQIKIAQGKSLTELGLC---QEKITPQGCAIQCHLRTEDPKRNFQPST 411
++E ITGID+VQSQI IA G SL + QE I G AIQ + TEDP NF P T
Sbjct: 303 ITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDT 362
Query: 412 GRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQ 471
G++ + G+R+D+ + G I+P YDSLL K+ T++ + KM R L E +
Sbjct: 363 GKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFR 422
Query: 472 VSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
+ G+ TN+PFL NV KFLSGE +T+FID P+L
Sbjct: 423 IRGIKTNIPFLENVVQHPKFLSGEY-DTSFIDTTPELFV 460
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 | Back alignment and structure |
|---|
Score = 679 bits (1755), Expect = 0.0
Identities = 297/770 (38%), Positives = 399/770 (51%), Gaps = 159/770 (20%)
Query: 490 KFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDP 549
SG + +D+NP+L + Q R K+L ++G +VNGP TP+ V P DP
Sbjct: 9 HHSSGLVPRGSHMDENPELFQLRPAQN-RAQKLLHYLGHVMVNGPTTPIPVKASPSPTDP 67
Query: 550 VIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTV 609
V+ + P G+R +L G F
Sbjct: 68 VVPA------------------------------VPIGPPPAGFRDILLREGPEGF---- 93
Query: 610 RKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDA 669
+VR +LL DTTFRDA
Sbjct: 94 ----------------------------------------ARAVRNHPGLLLMDTTFRDA 113
Query: 670 HQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELREL 729
HQSLLATRVRT+DLKK++P+VA+ F+ L+S+E WGGA ++FL ECPW RL ELREL
Sbjct: 114 HQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELREL 173
Query: 730 IPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAV 789
IPNIPFQM+LRG + VGY+NY V FC +A + G+D+FRVFD LN +PN++ GM+A
Sbjct: 174 IPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAA 233
Query: 790 QQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPT 849
GG +VEA I Y GD+ +P++ KYSL YY LA++LV +G +LC+KDMAGLLKPT
Sbjct: 234 GS-AGG--VVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPT 290
Query: 850 AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAM 909
A +L+ S R+++P++ +H+HTHD +G GVA LAC +AGAD+VDVAADSMSG+ SQP+M
Sbjct: 291 ACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSM 350
Query: 910 GTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWR 969
G +V+C T + + V DYS YW
Sbjct: 351 GALVACTRGTP-------------------------------LDTEVPMERVFDYSEYWE 379
Query: 970 KVRELYAPFEC-TDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD--FEDVKRAYRTANF 1026
R LYA F+C +K+ +S+ Y EIPGGQYTNL F+ S GL F++VK+AY AN
Sbjct: 380 GARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQ 439
Query: 1027 LLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGF 1086
+LGD+IK TPSSK+V DLA FM Q LS + A+++ FP+SV EF QG IG P+ GF
Sbjct: 440 MLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGF 499
Query: 1087 PKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGP 1146
P+ + KVL L + + R P
Sbjct: 500 PEPFRSKVLKDLP-----------RV---EGR---------------------------P 518
Query: 1147 VDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKL 1206
LP + E + E V ++ ++P F F FGP+D L
Sbjct: 519 GASLPPLDL---QALEKELVDRHGEEVTP-EDV-LSAAMYPDVFAHFKDFTATFGPLDSL 573
Query: 1207 PTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNG 1256
TR+FL GP I EEF E + G T ++ L++S+ LN G+R VFF NG
Sbjct: 574 NTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNG 622
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 7e-39
Identities = 59/150 (39%), Positives = 90/150 (60%), Gaps = 4/150 (2%)
Query: 1280 LRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL- 1338
L + R+FL GP I EEF E + G T ++ L++S+ LN G+R VFF NGQLRS+
Sbjct: 570 LDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLRSIL 628
Query: 1339 --DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETL 1396
D K++ KA D G+IGAPMPG +I++KV G +V K L V+S MK ET+
Sbjct: 629 VKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETV 688
Query: 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
+ + +G V+++ V + +DL++ ++
Sbjct: 689 VTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451 | Back alignment and structure |
|---|
Score = 654 bits (1689), Expect = 0.0
Identities = 195/454 (42%), Positives = 307/454 (67%), Gaps = 7/454 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+ K+L+ANR E+A+R+ RAC E+GI +V IY+E + + H D+A+++G P+ Y
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGT--DPLDTY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LN II +A DAIHPGYGFL+E +FAK AG+ FIGP V++ +GDK ++
Sbjct: 60 LNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSK 119
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+ KA VP++PG+ + +++ K E+ +PV+LKA GGGGRG+R+ N++ + +N
Sbjct: 120 EVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKN 179
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+++A EA +FG+ D+L+EK+I+ P+HIE Q+LGDK+G+V+HL ERDCS+QRR QK+++
Sbjct: 180 YEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVE 239
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
IAP+ ++ R+ + AK +GY NAGT+EF+ D++ N YFIE+N R+QVEH +S
Sbjct: 240 IAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVS 299
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E +TGID+V+ QIKIA G+ L + QE + G AI+C + EDPK+NF PST ++
Sbjct: 300 EMVTGIDIVKWQIKIAAGE---PLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIER 356
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ P GIRV+ + G +++P YDS++AK+I T+ + E+MR ALE +++GV
Sbjct: 357 YYVPGGFGIRVEHAA-ARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVK 415
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
T +P L+N+ +K F +G+ T +++++P++ E
Sbjct: 416 TTIPLLINIMKEKDFKAGK-FTTKYLEEHPEVFE 448
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 | Back alignment and structure |
|---|
Score = 632 bits (1634), Expect = 0.0
Identities = 187/455 (41%), Positives = 294/455 (64%), Gaps = 7/455 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
M+K+LIANR E+A+R+ RAC ++GI++V IYSE DK + H D+A+ VG +Y
Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPT-LSKDSY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP I+ IA + D +HPGYGFL+E DFA+ L+FIGP+ ++ +G K +A+
Sbjct: 60 LNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAK 119
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+KA+VP++PG+ + DV + K+ ++ +PVI+KA GGGG+G+R+ ++ +E
Sbjct: 120 AEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETG 179
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
F+ + EA +FG + +EK+I+ RHIE+QI+GD YG+V+HL ERDC++QRR QK+++
Sbjct: 180 FRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVE 239
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQVEHTL 355
AP+ + R + +VR AK++ Y NAGT+EF+ D D+ FYF+E+N R+QVEH +
Sbjct: 240 EAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E +TGID+V+ Q+++A G L QE I G AI+ + E+P +NF PS G+++
Sbjct: 300 TEMVTGIDLVKLQLQVAMGD---VLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIE 356
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
+ P G+R++S+C Y I P YDS++AK+I+H T + RAL E V G+
Sbjct: 357 QYLAPGGYGVRIESAC-YTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGI 415
Query: 476 TTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
T +PF + + ++ F SG+ TNF++ N + +
Sbjct: 416 DTTIPFHIKLLNNDIFRSGK-FNTNFLEQNSIMND 449
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446 | Back alignment and structure |
|---|
Score = 628 bits (1622), Expect = 0.0
Identities = 186/449 (41%), Positives = 284/449 (63%), Gaps = 8/449 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++ ILIANR E+A+R R EMG K++ +YSE DK + + D + +GK +Y
Sbjct: 6 IKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKA-RSSESY 64
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ DAI PGYGFLSE ++F + ++FIGP+ + + DK A+
Sbjct: 65 LNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAK 124
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
+A VP+IPG+ + + K+ E+ +PVILKAA GGGGRGMR+V N+ +E+
Sbjct: 125 QVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKA 184
Query: 237 FKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296
+ A+SEA+ +FG M +EKYI PRHIEVQ++GD +G+V+H+ ERDCSMQRR+QK+I+
Sbjct: 185 YWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIE 244
Query: 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356
+PA + R + ET+++ AK++GY AGT EFL+DK+ +FYFIE+N RLQVEH +S
Sbjct: 245 ESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQVEHCVS 304
Query: 357 EEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
E ++GID+++ IK+A+G +L QE I G +I+C + ED K F PS G++
Sbjct: 305 EMVSGIDIIEQMIKVAEGYALPS----QESIKLNGHSIECRITAEDSK-TFLPSPGKITK 359
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVT 476
+ PA +R++S C Y + YDS++ K++V + KM+ AL+E +SG+
Sbjct: 360 YIPPAGRNVRMESHC-YQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISGIK 418
Query: 477 TNLPFLLNVFDDKKFLSGEALETNFIDDN 505
T F L++ ++ F++ +TN++ +
Sbjct: 419 TTKDFHLSMMENPDFINNN-YDTNYLARH 446
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449 | Back alignment and structure |
|---|
Score = 614 bits (1586), Expect = 0.0
Identities = 180/450 (40%), Positives = 279/450 (62%), Gaps = 9/450 (2%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +GDKV A
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAI 120
Query: 177 DAALKADVPIIPGTTEPV-TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
A KA VP +PG+ P+ D+DK + + +PVI+KA+ GGGGRGMR+V + +
Sbjct: 121 AAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQ 180
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQRR+QKV+
Sbjct: 181 SISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 240
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
+ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+QVEH +
Sbjct: 241 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE-NGEFYFIEMNTRIQVEHPV 299
Query: 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLD 415
+E ITG+D+++ Q++IA G+ L + QE++ +G A++C + EDP F PS G++
Sbjct: 300 TEMITGVDLIKEQLRIAAGQ---PLSIKQEEVHVRGHAVECRINAEDPN-TFLPSPGKIT 355
Query: 416 VFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV 475
F P G+R +S Y G + P YDS++ K+I + + +M+ AL+E + G+
Sbjct: 356 RFHAPGGFGVRWESHI-YAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGI 414
Query: 476 TTNLPFLLNVFDDKKFLSGEALETNFIDDN 505
TN+ + + +D+ F G ++++
Sbjct: 415 KTNVDLQIRIMNDENFQHGG-TNIHYLEKK 443
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 | Back alignment and structure |
|---|
Score = 593 bits (1531), Expect = 0.0
Identities = 187/474 (39%), Positives = 287/474 (60%), Gaps = 27/474 (5%)
Query: 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYL 117
KILIANR E+A RV + +MGI +V IYS+ DK + H D+A +G P +Y+
Sbjct: 3 NKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIG-PPPANQSYI 61
Query: 118 NIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARD 177
I +++ + A+HPGYGFLSE FA+A+ G+ F+GP ++ +GDK+ ++
Sbjct: 62 VIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKK 121
Query: 178 AALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENF 237
A +A+V +PG + D D+ + +++ +PV++KA+ GGGG+GMR+ N E F
Sbjct: 122 IAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGF 181
Query: 238 KRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297
+ +++EA SFG D + +EK++ +PRHIE+Q+L D +G+ ++L ER+CS+QRR QKV++
Sbjct: 182 QSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEE 241
Query: 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSE 357
AP+ + + R A+ E +V LAK++GY++AGTVEF++D NFYF+E+N RLQVEH ++E
Sbjct: 242 APSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVEHPVTE 301
Query: 358 EITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVF 417
ITG+D+V+ I++A G+ L + Q + G AI+ L EDP R F PS GRL +
Sbjct: 302 LITGVDLVEQMIRVAAGE---PLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRY 358
Query: 418 TDPASI--------------------GIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYK 457
PA +R D+ Y G +IS YD ++AK+ T
Sbjct: 359 RPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGV-YEGGEISMYYDPMIAKLCTWAPTRA 417
Query: 458 SSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLE 510
++ E MR AL+ +V G+ NLPFL V D KF+SG+ + T FI + P+ E
Sbjct: 418 AAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGD-MTTAFIAEEYPEGFE 470
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-22
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 1318 HLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQ 1377
+ G + + L + + K DT+ + PMPG I++V V+VGQ
Sbjct: 579 RIRTRGADLKVHVRTPRQAELAR------LMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQ 632
Query: 1378 QVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
+V++ L + MK E ++ A GVV +I G +A +D+++ +
Sbjct: 633 EVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Length = 554 | Back alignment and structure |
|---|
Score = 586 bits (1514), Expect = 0.0
Identities = 141/515 (27%), Positives = 229/515 (44%), Gaps = 72/515 (13%)
Query: 55 KTMEKILIANRSEVAIRVARACNEMGIK-----------SVGIYSEQDKFSAHRTKVDQA 103
+ KILIAN A++ R+ + + ++ + + + + DQ
Sbjct: 45 TVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQY 104
Query: 104 FLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAV--IGAGLEFIGP 161
V G Y N+ I+ IA+ +VDA+ G+G SE + + + FIGP
Sbjct: 105 IEVPGG-TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGP 163
Query: 162 APNVLKTLGDKVLARDAALKADVPIIPGTTEP------------------------VTDV 197
N +++LGDK+ + A A VP IP + T
Sbjct: 164 PGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSP 223
Query: 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEK 257
+ + + FPV++KA+ GGGG+G+R V EE+F +A + + K
Sbjct: 224 EDGLQKAKRIGFPVMIKASEGGGGKGIRQVER----EEDFIALYHQAANEIPGSPIFIMK 279
Query: 258 YIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVR 317
R RH+EVQ+L D+YG + L+ RDCS+QRR+QK+I+ AP + + +VR
Sbjct: 280 LAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVR 339
Query: 318 LAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKS 376
L K +GY +AGTVE+L D FYF+E+NPRLQVEH +E ++G+++ +Q++IA G
Sbjct: 340 LGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIP 399
Query: 377 L--------------------------TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPS 410
+ + Q + P+G C + +EDP F+PS
Sbjct: 400 MHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPS 459
Query: 411 TGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEET 470
G L +S + S I DS I ++S + M AL+E
Sbjct: 460 GGTLHELNFRSSSNVWGYFSV-GNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKEL 518
Query: 471 QVSG-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
+ G T + +L+ + + + F + T ++DD
Sbjct: 519 SIRGDFRTTVEYLIKLLETEDFEDNT-ITTGWLDD 552
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 | Back alignment and structure |
|---|
Score = 595 bits (1537), Expect = 0.0
Identities = 175/470 (37%), Positives = 267/470 (56%), Gaps = 11/470 (2%)
Query: 37 QQQRFPVRRCGCKPPPPPKTM-EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSA 95
R K E +LIANR E+A+R+ + MGIKSV +YS+ DK+S
Sbjct: 10 HSSGLVPRGSHMASEAQKKKPFETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQ 69
Query: 96 HRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAG 155
H T D + + G YL+I +II AK AI PGYGFLSE DF+
Sbjct: 70 HVTDADFSVALH-GRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQEN 128
Query: 156 LEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215
+ F+GP+ + ++ LG K AR+ A +A VP++PG+ + D + KE ++E+PV++K+
Sbjct: 129 IVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKS 187
Query: 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275
GGGG G++ V ++D IE F+ Q + + FG + +E++++ RH+E+Q++GD +G
Sbjct: 188 TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFG 247
Query: 276 DVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335
+ + ERDCS+QRR QKVI+ PA ++ + R + S RL L Y AGTVEF+ D
Sbjct: 248 KAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYD 307
Query: 336 KDDN-FYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAI 394
+ + FYF+EVN RLQVEH ++E +TG+D+V+ ++IA S KI G +I
Sbjct: 308 EQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDS---PDFDNTKIEVSGASI 364
Query: 395 QCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454
+ L E+P ++F+PS G+L + P+ RVD+ G +S +YD LAKIIVH
Sbjct: 365 EARLYAENPVKDFRPSPGQLTSVSFPS--WARVDTWV-KKGTNVSAEYDPTLAKIIVHGK 421
Query: 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
+ K+ +AL ET V G TN+ +L ++ K F + + T +D
Sbjct: 422 DRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAK-VATKVLDS 470
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 6e-17
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 1354 SDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG 1413
D A + + G + VG V+ D +I++ MKTE ++ A+ G V +I + G
Sbjct: 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNG 1223
Query: 1414 GQVAQNDLVVVL 1425
V DLV V+
Sbjct: 1224 DMVEAGDLVAVI 1235
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Length = 587 | Back alignment and structure |
|---|
Score = 558 bits (1439), Expect = 0.0
Identities = 147/564 (26%), Positives = 253/564 (44%), Gaps = 70/564 (12%)
Query: 1 MRRAEKERVTTMLGFLGATRHAMKSLTRWIRPNLLVQQQRFPVRRCG--CKPPPPPKTME 58
MR + R + G + + + + R L + F V + +E
Sbjct: 1 MRGSGSMRGS---GSMRPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGDRVIE 57
Query: 59 KILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQDKF--SAHRTKVDQAFLVG 107
K+LIAN A++ R+ NE I+ V + + +D + + D V
Sbjct: 58 KVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVP 117
Query: 108 KGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLK 167
G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP +
Sbjct: 118 GG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 176
Query: 168 TLGDKVLARDAALKADVPIIPGTTEP---------------------------VTDVDKV 200
LGDK+ + A VP +P + V DVD+
Sbjct: 177 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236
Query: 201 KEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYID 260
E + + FP+++KA+ GGGG+G+R + + F++ QSE + + K
Sbjct: 237 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMKLAQ 292
Query: 261 RPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAK 320
RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + ++RLAK
Sbjct: 293 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAK 352
Query: 321 SLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL--- 377
++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G L
Sbjct: 353 TVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRL 412
Query: 378 ----------------TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPA 421
+G I + +E+P F+PS+G + +
Sbjct: 413 KDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRS 472
Query: 422 SIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-VTTNLP 480
S + S + DS + + M AL+E + G T +
Sbjct: 473 SKNVWGYFSV-AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVE 531
Query: 481 FLLNVFDDKKFLSGEALETNFIDD 504
+L+N+ + + F + + ++T ++D
Sbjct: 532 YLINLLETESFQNND-IDTGWLDY 554
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Length = 540 | Back alignment and structure |
|---|
Score = 554 bits (1431), Expect = 0.0
Identities = 139/509 (27%), Positives = 237/509 (46%), Gaps = 66/509 (12%)
Query: 55 KTM-EKILIANRSEVAIRVARAC---------NEMGIKSVGIYSEQDKF--SAHRTKVDQ 102
+ EK+LIAN A++ R+ NE I+ V + + +D + + D
Sbjct: 37 DRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADH 96
Query: 103 AFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPA 162
V G P Y N+ I+ IAK V A+ G+G SE + + G+ F+GP
Sbjct: 97 YVPVPGG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPP 155
Query: 163 PNVLKTLGDKVLARDAALKADVPIIPGTTEP---------------------------VT 195
+ LGDK+ + A VP +P + V
Sbjct: 156 SEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVK 215
Query: 196 DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLV 255
DVD+ E + + FP+++KA+ GGGG+G+R + + F++ QSE + +
Sbjct: 216 DVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFL 271
Query: 256 EKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETS 315
K RH+EVQIL D+YG+ V L+ RDCS+QRR+QK+++ APA +++ + + + +
Sbjct: 272 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCA 331
Query: 316 VRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375
+RLAK++GY +AGTVE+L +D +F+F+E+NPRLQVEH +E I +++ +Q++IA G
Sbjct: 332 IRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGV 391
Query: 376 SL-------------------TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDV 416
L +G I + +E+P F+PS+G +
Sbjct: 392 PLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQE 451
Query: 417 FTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-V 475
+S + S + DS + + M AL+E + G
Sbjct: 452 LNFRSSKNVWGYFSV-AATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDF 510
Query: 476 TTNLPFLLNVFDDKKFLSGEALETNFIDD 504
T + +L+N+ + + F + + ++T ++D
Sbjct: 511 RTTVEYLINLLETESFQNND-IDTGWLDY 538
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Length = 539 | Back alignment and structure |
|---|
Score = 548 bits (1415), Expect = 0.0
Identities = 130/535 (24%), Positives = 216/535 (40%), Gaps = 73/535 (13%)
Query: 648 EFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAV 707
V + + + +T+ RDAHQSL+ATR+ D+ + +S+E WGGA
Sbjct: 14 PREIEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDA--AGYWSVECWGGAT 71
Query: 708 SHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGI 767
+C++FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+
Sbjct: 72 YDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGM 131
Query: 768 DIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827
D+FRVFD +N N+ M AV++ G + TICY +++ Y LA
Sbjct: 132 DVFRVFDAMNDPRNMAHAMAAVKK-AGK--HAQGTICYTIS------PVHTVEGYVKLAG 182
Query: 828 QLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACV 886
QL++ GA + LKDMA LLKP A +I + ++ Y I++H H G + + +
Sbjct: 183 QLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI 242
Query: 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946
+AG D+VD A SMS ++ LE T
Sbjct: 243 EAGVDVVDTAISSMSLGPGHNPTESVAEMLEGTG-------------------------- 276
Query: 947 AHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFR 1006
+ +D + +++ +R Y FE + + +IPGG +N++ +
Sbjct: 277 -----YTTNLDYDRLHKIRDHFKAIRPKYKKFE--SKTLVDTSIFKSQIPGGMLSNMESQ 329
Query: 1007 TMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADK 1064
+ G + ++V G TPSS++V A+F +
Sbjct: 330 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVM----------MGEY 379
Query: 1065 IIFPKSVTEFFQGSIGEPYQGFPKKLQEKVL-------------DSLKDHALERKAEFDP 1111
+ G G K+ + D L ++ E
Sbjct: 380 KRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSKEAAT 439
Query: 1112 IMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFD 1166
+ + +++ + +FP+ F + R GP T A E
Sbjct: 440 LKGFNGTDED--VLTYALFPQVAPVFFEHR-AEGPHSVALTDAQLKAEAEGDEKS 491
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Length = 464 | Back alignment and structure |
|---|
Score = 539 bits (1391), Expect = e-179
Identities = 138/508 (27%), Positives = 230/508 (45%), Gaps = 70/508 (13%)
Query: 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK 713
+ +K + +TD RDAHQSL ATR+R D+ ++ + +SLE WGGA +C++
Sbjct: 3 QAIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQI--GYWSLECWGGATFDSCIR 60
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
FL E PW+RL L++ +PN P QM+LRG +L+GY +Y+ V F A + G+D+FRVF
Sbjct: 61 FLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVF 120
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
D +N V N+ + + AV++ G + T+CY ++L + D+A+QL E G
Sbjct: 121 DAMNDVRNMQQALQAVKK-MGA--HAQGTLCYTTS------PVHNLQTWVDVAQQLAELG 171
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893
+ LKDMAG+L P AA+ L+ + +++ ++ +H+H H AG T L ++AG D V
Sbjct: 172 VDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRV 230
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953
D A SMSG PA ++V+ L+ T +
Sbjct: 231 DTAISSMSGTYGHPATESLVATLQGTG-------------------------------YD 259
Query: 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGLD 1013
G+D+ + ++Y+R VR+ Y FE +K + + + ++PGG TN++ +
Sbjct: 260 TGLDIAKLEQIAAYFRDVRKKYHAFE-GMMKGSDARILVAQVPGGMLTNMESQLKQQNAL 318
Query: 1014 --FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSV 1071
+ V LG + TP+S++V A+ Y+ K
Sbjct: 319 DKLDLVLEEIPRVREELGFLPLVTPTSQIVGTQAVINVVLGERYKT---------ITKET 369
Query: 1072 TEFFQGSIGEPYQGFPKKLQEKVL-----------DSLKDHALERKAEFDPIMACDYRED 1120
+ +G G+ +LQ +VL D + + +
Sbjct: 370 SGVLKGEYGKTPAPVNTELQARVLAGAEAITCRPADLIAAEMPTLQDRVLQQAKEQHITL 429
Query: 1121 EPFK----MNKLIFPKATKKFMKFRDEF 1144
+ +F + KF+ R
Sbjct: 430 AENAIDDVLTIALFDQVGWKFLANRHNL 457
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 4e-45
Identities = 41/105 (39%), Positives = 64/105 (60%)
Query: 167 KTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRM 226
+ GDK+ ++ A KA+V IPG V D ++ E+ +PV++KA+ GGGG+GMR+
Sbjct: 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRI 63
Query: 227 VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILG 271
+ + + F+ + EA +SFG D +L+EK+ID PRHI G
Sbjct: 64 AWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-31
Identities = 47/327 (14%), Positives = 99/327 (30%), Gaps = 39/327 (11%)
Query: 57 MEK--ILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPV 113
M+K +LI + + + ++ DQ ++V P +
Sbjct: 2 MQKPHLLITSAGRRAKLVEYFVKEFKTGRVSTADC--SPLASALYMADQHYIV----PKI 55
Query: 114 AAYLNIPEIICIAKNNNVDAIHPGYG----FLSE-REDFAKAVIGAGLEFIGPAPNVLKT 168
I ++ + ++ V A+ L++ E F G+ I +
Sbjct: 56 DEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAI----GVTVIVSPYAACEL 111
Query: 169 LGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
DK + L+ + T + EV+ PV +K G +R V
Sbjct: 112 CFDKYTMYEYCLRQGIAHAR--TYATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVE 169
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288
+ +E+ F + D++V++ + + V D V
Sbjct: 170 TVEEVEQLFSK----------NTDLIVQELLVGQ-ELGVDAYVDLISGKVT-----SIFI 213
Query: 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348
+ + ++ +RD + E + G + D Y E+NPR
Sbjct: 214 KE-KLTMRAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDL-FDVAGTLYLSEINPR 271
Query: 349 LQVEHTLSEEITGIDVVQSQIKIAQGK 375
+ + E G++ + +
Sbjct: 272 FGGGYPHAYE-CGVNFPAQLYRNLMHE 297
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 9e-31
Identities = 68/426 (15%), Positives = 142/426 (33%), Gaps = 52/426 (12%)
Query: 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLN 118
++LI + + +A E+GI ++ + + D+ + N
Sbjct: 9 RLLILGAGRGQLGLYKAAKELGIHTI-AGTMPNAHKPCLNLADEISYMD--------ISN 59
Query: 119 IPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLE---FIGPAPNVLKTLGDKVLA 175
E+ K+ N+D + D + + +G GDK
Sbjct: 60 PDEVEQKVKDLNLDGA------ATCCLDTGIVSLARICDKENLVGLNEEAAIMCGDKYKM 113
Query: 176 RDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
++A K +V V + +++K + ++ PVI+KA G +G+ + ++ +
Sbjct: 114 KEAFKKYNVNTARHFV--VRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAID 171
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV- 294
F + + +VE++I+ Q K DV+ +
Sbjct: 172 GFNETMN---LTKRD-YCIVEEFIEGY-EFGAQAFVYK-NDVLFV----MPHGDETYMSH 221
Query: 295 ----IQIAPAQDMSVSVRDAITETSVRLAKSLGYSN-AGTVEFLLDKDDNFYFIEVNPRL 349
+ D+ + + + K+LG +N A V+ +L KD+ Y IE+ R+
Sbjct: 222 TAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMIL-KDNEVYIIELTGRV 280
Query: 350 QVEHT--LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNF 407
L E GI+ + +A ++ + K G A
Sbjct: 281 GANCLPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMII---------E 331
Query: 408 QPSTGRLDVFTDPASIGIRVDSSCPY--PGLQISPDYDSL--LAKIIVHTATYKSSCEKM 463
+G L + + + + +I +S + +IIV T +K+
Sbjct: 332 TEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKL 391
Query: 464 RRALEE 469
+
Sbjct: 392 DVIINN 397
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 8e-29
Identities = 65/386 (16%), Positives = 124/386 (32%), Gaps = 36/386 (9%)
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLAR 176
+ +I+ +A+ DAI A L G + DK R
Sbjct: 89 EVVEQIVKVAEMFGADAITTNNELFIA----PMAKACERLGLRGAGVQAAENARDKNKMR 144
Query: 177 DAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236
DA KA V I VT ++ + +E+ P+ILK + G+ ++ + + E+
Sbjct: 145 DAFNKAGVKSIKNKR--VTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDE 202
Query: 237 FKRAQS------EALASFGKDDMLVEKYIDRPRHIEVQILGDKY----------GDVVHL 280
F R A + + E+++ Q G G+ +
Sbjct: 203 FNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPI 262
Query: 281 YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT-VEFLLDKDDN 339
D + Q + + I P+ + + I E + + + LG N T E L K+
Sbjct: 263 AIHDKTPQIGFTETSHITPS-ILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMKNRE 321
Query: 340 FYFIEVNPRLQVEHT--LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCH 397
IE R + +++ G+D+ Q + + +L P A
Sbjct: 322 PGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDGLLDQEPYYVADCHL 381
Query: 398 LRTEDPKRNFQPSTGRLDVFTDP-------ASIGIRVDSSCPYPGLQISP---DYDSLLA 447
+ P T V V S PG + + + +A
Sbjct: 382 YPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIA 441
Query: 448 KIIVHTATYKSSCEKMRRALEETQVS 473
+ + + E +R+ + +++
Sbjct: 442 AFELKGSNSQDVAESIRQIQQHAKLT 467
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 9e-29
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 1350 SKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409
+ A GEI AP+ G + ++ VK G VK ++V+ MK ET I+A DG V+++
Sbjct: 1 AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Query: 1410 VEVGGQVAQNDLVVVL 1425
V+ V ++ +
Sbjct: 61 VKERDAVQGGQGLIKI 76
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-28
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 1339 DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIH 1398
+ S T+ + +PMPG ++ V VK G V + + V+ MK + +
Sbjct: 7 HSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMT 66
Query: 1399 ASADGVVKEIFVEVGGQVAQNDLVVVLD 1426
A G VK + + G V + DL+V L+
Sbjct: 67 AGKTGTVKSVHCQAGDTVGEGDLLVELE 94
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 1350 SKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409
+ +T G APM G I +V VK G +VK D L+VM MK E I + DG VK++F
Sbjct: 7 GVSSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVF 66
Query: 1410 VEVGGQVAQNDLVVVLD 1426
G Q ++ +V +
Sbjct: 67 YREGAQANRHTPLVEFE 83
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-26
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 1355 DTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414
+ + APMPG ++ V V+VG +V+ L+V+ MK E I + DGVVK I V+ G
Sbjct: 3 VSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE 62
Query: 1415 QVAQNDLVVVL 1425
V ++ L
Sbjct: 63 AVDTGQPLIEL 73
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 2e-24
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQN 1419
+ M GN+ +V VK G Q++K + ++ MK E I A G+VKE+ + G V +
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEG 61
Query: 1420 DLVVVLD 1426
D+++ L
Sbjct: 62 DVLLELS 68
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-17
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 1353 DSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEV 1412
++D + +P G + + V+ G V+ M VMK ++ G VK I
Sbjct: 2 END-PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRP 59
Query: 1413 GGQVAQNDLVVVLDV 1427
G + +V L++
Sbjct: 60 GAVLEAGCVVARLEL 74
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 3e-15
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411
+ + +P G + + V+ G V+ M VMK ++ G VK I
Sbjct: 12 EKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KR 70
Query: 1412 VGGQVAQNDLVVVLDV 1427
G + +V L++
Sbjct: 71 PGAVLEAGCVVARLEL 86
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 6e-15
Identities = 41/252 (16%), Positives = 77/252 (30%), Gaps = 42/252 (16%)
Query: 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKAD 183
+ K++ I P FL E +G + + DK L+ +
Sbjct: 66 YLEKSDAFLIIAPEDDFLLYT---LTKKAEKYCENLGSSSRAIAVTSDKWELYKK-LRGE 121
Query: 184 VPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSE 243
V + P T + + + I+K G G+
Sbjct: 122 VQV------PQTSLRPL-------DCKFIIKPRTACAGEGIGFSDEVP------------ 156
Query: 244 ALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDM 303
D + +++I+ ++ V + + + + E+ + RY + A +
Sbjct: 157 -------DGHIAQEFIE-GINLSVSLAVGEDVKCLSVNEQIIN-NFRYAGAVVPAR---I 204
Query: 304 SVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGID 363
S V+ + E +VR + + N G V + D Y IE+N RL G
Sbjct: 205 SDEVKREVVEEAVRAVECVEGLN-GYVGVDIVYSDQPYVIEINARLTTPVVAFSRAYGAS 263
Query: 364 VVQSQIKIAQGK 375
V
Sbjct: 264 VADLLAGGEVKH 275
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} Length = 320 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 29/295 (9%)
Query: 659 ILLTDTTFRDAHQSLLATRVR-TYDLKKVSPFVANRFNNL--YSLEMWGGAVSHTCLKFL 715
+ + D T RD T + N L LE+
Sbjct: 3 LKILDCTLRDGGY---YTNWDFNSKIVDA---YILAMNELPIDYLEVGYRNKPSKEYMGK 56
Query: 716 KECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDP 775
+ + + + ++ N +P ++ L +D+ R+
Sbjct: 57 FGYTPVSVLKH------LRNISTKKIAIMLNEKNTTPEDLNHL-LLPIIGLVDMIRIAID 109
Query: 776 LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835
N+ + + + + V + Y ++ + ++ A
Sbjct: 110 PQ---NIDRAIVLAKAIKTMGFEVGFNVMYMSK--------WAEMNGFLSKLKAIDKIAD 158
Query: 836 VLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895
+ C+ D G + P K L+ R+ Y ++ + H HD G+ ++ + G D +D
Sbjct: 159 LFCMVDSFGGITPKEVKNLLKEVRK-YTHVPVGFHGHDNLQLGLINSITAIDDGIDFIDA 217
Query: 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNL 950
M M +++ L N +D + + + + + + E Y NL
Sbjct: 218 TITGMGRGAGNLKMELLLTYL-NKHHGLNVDFNVLGNIITTFTPLLEKYQWGTNL 271
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 27/196 (13%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P L+ D++ + VP P PV + ++E V P +LK GG
Sbjct: 86 PPAKALEVAQDRLREKTFFQGLGVPTPP--FHPVDGPEDLEEGLKRVGLPALLKTRRGGY 143
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
G+G +V ++ EAL + G +++E ++ R + + + + G+V
Sbjct: 144 DGKGQALVRTEEEAL--------EALKALGGRGLILEGFVPFDREVSLLAVRGRTGEVAF 195
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
L E + + +APA S +++ ++R ++L Y G +EF
Sbjct: 196 YPLVE---NRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDY--VGVLALEFFQV 250
Query: 336 KDDNFYFIEVN---PR 348
++ + N PR
Sbjct: 251 GEE----LLFNEMAPR 262
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Length = 403 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 37/193 (19%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P+ ++T+ +K ++ K +P+ ++ + +++ +P++LK+
Sbjct: 113 PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAY 172
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
GRG V ++D I EAL + + EK+ + V ++ K +V+
Sbjct: 173 DGRGNFRVNSQDDIP--------EALEALKDRPLYAEKWAYFKMELAVIVVKTK-DEVLS 223
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
E ++Q + APA+++S ++ E + + + G VE L
Sbjct: 224 YPTVE---TVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDG--KGVFGVEMFLL 278
Query: 336 KDDNFYFIEVNPR 348
+DD+ E+ R
Sbjct: 279 EDDSIMLCEIASR 291
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-13
Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 38/250 (15%)
Query: 113 VAAYLNIPEIICIAKNNNVDAIHPGYGFLSERE----DFAKAVIGAGLEFIGPAPNVLKT 168
V L+ + + + I P E E D + GL + P K
Sbjct: 57 VINMLDGDALRRVVELEKPHYIVP------EIEAIATDMLIQLEEEGLNVV-PCARATKL 109
Query: 169 LGDKVLARDAAL-KADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMV 227
++ R A + +P +E ++ +P I+K G+G +
Sbjct: 110 TMNREGIRRLAAEELQLPTST--YRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFI 167
Query: 228 ANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD-----VVHLYE 282
+ + + + +K AQ A G ++VE + I + + G V H
Sbjct: 168 RSAEQLAQAWKYAQQGGRA--GAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGH--- 222
Query: 283 RDCSMQRR--YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLDKDD 338
Q Y++ Q P Q MS + E + ++ +LG G VE + D+
Sbjct: 223 ----RQEDGDYRESWQ--PQQ-MSPLALERAQEIARKVVLALGG--YGLFGVELFVCGDE 273
Query: 339 NFYFIEVNPR 348
F EV+PR
Sbjct: 274 -VIFSEVSPR 282
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 17/237 (7%)
Query: 129 NNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIP 188
V S A+ + G+ + P V++ GDK A KA +P
Sbjct: 47 EGVTVALERCVSQSRGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVALAKAGLPQPK 105
Query: 189 GTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASF 248
T TD ++ + +PV+LK G GR + E L F
Sbjct: 106 --TALATDREEALRLMEAFGYPVVLKPVIGSWGRL--LAXXXXXXXXXXXXXXKEVLGGF 161
Query: 249 GKDDMLVEKYIDRP-RHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSV 307
+++Y+++P R I V ++G++ + R + Q + +
Sbjct: 162 QHQLFYIQEYVEKPGRDIRVFVVGER---AIAAIYR---RSAHWITNTA-RGGQAENCPL 214
Query: 308 RDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDV 364
+ + SV+ A+++G V+ + EVN ++ ++ S TG+D+
Sbjct: 215 TEEVARLSVKAAEAVGGGVVA-VDLFES-ERGLLVNEVNHTMEFKN--SVHTTGVDI 267
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 7e-13
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 33/192 (17%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK + + VP P T V D ++ P+ +K A G +
Sbjct: 107 DKFRTKLVWQQTGVPTPPFET--VMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLK 164
Query: 227 VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL------ 280
V DA+ A A+ ++VEK I+ I GD ++ +
Sbjct: 165 VKTADALPAALSEA-----ATHD-KIVIVEKSIEGGGEYTACIAGDLDLPLIKIVPAGEF 218
Query: 281 ------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
Y + + +Y + P + + + R LG ++ G +F+L
Sbjct: 219 YDYHAKYVANDT---QY-----LIPC-GLPAEQETELKRIARRAFDVLGCTDWGRADFML 269
Query: 335 DKDDNFYFIEVN 346
D N YF+EVN
Sbjct: 270 DAAGNAYFLEVN 281
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 9e-13
Identities = 52/248 (20%), Positives = 92/248 (37%), Gaps = 29/248 (11%)
Query: 113 VAAYLNIPEIICIAKNNNVDAIHPGYGFLSERE----DFAKAVIGAGLEFIGPAPNVLKT 168
V ++ + + + DAI P E E D G + P
Sbjct: 65 VGNMMDKDFLWSVVEREKPDAIIP------EIEAINLDALFEFEKDGYFVV-PNARATWI 117
Query: 169 LGDKVLARDAALK-ADVPIIPGTTE--PVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225
+ R+ +K A VP T+ T +D++ E C+++ +P KA G+G
Sbjct: 118 AMHRERLRETLVKEAKVP----TSRYMYATTLDELYEACEKIGYPCHTKAIMSSSGKGSY 173
Query: 226 MVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQI---LGDKYGDVVHLYE 282
V + I + ++ A+++A S K ++VE++ID + + V +
Sbjct: 174 FVKGPEDIPKAWEEAKTKARGSAEK--IIVEEHIDFDVEVTELAVRHFDENGEIVTTFPK 231
Query: 283 RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLDKDDNF 340
Q PA+ +S + + R+ LG G VE + K D
Sbjct: 232 PVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGG--LGIFGVEMFV-KGDKV 287
Query: 341 YFIEVNPR 348
+ EV+PR
Sbjct: 288 WANEVSPR 295
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Length = 389 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 21/193 (10%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
+L ++ ++A KA +P+ V + +++ E E+ +P +LK GG
Sbjct: 102 QGSQLLSKTQNRFTEKNAIEKAGLPVAT--YRLVQNQEQLTEAIAELSYPSVLKTTTGGY 159
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
G+G ++ ++ ++E A + ++EK++ + + V ++ G+
Sbjct: 160 DGKGQVVLRSEADVDE--------ARKLANAAECILEKWVPFEKEVSVIVIRSVSGETKV 211
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
+ E ++ I PA ++ + + LA L GT VE
Sbjct: 212 FPVAE---NIHVNNILHESIVPA-RITEELSQKAIAYAKVLADELEL--VGTLAVEMFAT 265
Query: 336 KDDNFYFIEVNPR 348
D Y E+ PR
Sbjct: 266 ADGEIYINELAPR 278
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Length = 419 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 35/202 (17%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIP-GTTEPVTDVDKVKEFCDEVEFPVILKAAFGG 219
PA + D++ + + VP+ P E + + + + P ILK A G
Sbjct: 123 PAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAVLPGILKTARLG 182
Query: 220 -GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV- 277
G+G V+ +A A+ G ++EK + + I G
Sbjct: 183 YDGKGQVRVSTAREAR--------DAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSA 234
Query: 278 -------VHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAG 328
VH + ++ I PA + + + +VR+A +LGY G
Sbjct: 235 AFPLAQNVH---HNGILAL--------TIVPAPAADTARVEEAQQAAVRIADTLGY--VG 281
Query: 329 T--VEFLLDKDDNFYFIEVNPR 348
VEF + +D +F E+ PR
Sbjct: 282 VLCVEFFVLEDGSFVANEMAPR 303
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQ 1418
E+ P + EV VKVG +V LI + K + A GVVKE+ V VG +V
Sbjct: 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKT 63
Query: 1419 NDLVVVLDV 1427
L+++ +V
Sbjct: 64 GSLIMIFEV 72
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 38/194 (19%), Positives = 68/194 (35%), Gaps = 28/194 (14%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK L ++ + V D++ V +KAA G G+
Sbjct: 135 DKALTKELLTVNGIRNTKYIV--VDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISR 192
Query: 227 VANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHLYERDC 285
V N + E + F D +L+E+ ++ R +EV ++G+ V +
Sbjct: 193 VTNAEEYTEALSDS-------FQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTV 245
Query: 286 SMQRR----------YQ---KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEF 332
Q + V PA +S V + + ++ K L ++F
Sbjct: 246 PNQGSGDGWYDYNNKFVDNSAVHFQIPA-QLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304
Query: 333 LLDKDDNFYFIEVN 346
LLD+++ Y E N
Sbjct: 305 LLDENNVPYLGEPN 318
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 5e-11
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 33/193 (17%)
Query: 171 DKVLARDAALKADVP-----IIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225
DK+ ++ A +P + DK + PVI+K + G GM
Sbjct: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155
Query: 226 MVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL----- 280
V ++A+++ + A +++L+EK++ V ILG++ + +
Sbjct: 156 KVVAENALQDALRLA-----FQHD-EEVLIEKWLS-GPEFTVAILGEEILPSIRIQPSGT 208
Query: 281 -------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFL 333
+ D + +Y PA + S + ++ +LG G ++ +
Sbjct: 209 FYDYEAKFLSDET---QY-----FCPA-GLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259
Query: 334 LDKDDNFYFIEVN 346
LD D FY +E N
Sbjct: 260 LDSDGQFYLLEAN 272
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 6e-11
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427
+ EV VKVG +V LI + K + A GVVKE+ V VG +V L+++ +V
Sbjct: 17 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 7e-11
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427
+IE+ VK G ++ L+V+ K + + GVVK + V++G ++ + D ++ L+
Sbjct: 15 VIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 7e-11
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427
II V+V VG + +D LI + K + A GVVKE+ V+VG ++++ L+VV++
Sbjct: 18 IIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Length = 377 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
++ L D++ ++ A ++P V + + + + + +P I+K FGG
Sbjct: 100 QGYQAIQLLQDRLTEKETLKSAGTKVVP--FISVKESTDIDKAIETLGYPFIVKTRFGGY 157
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
G+G ++ N+ ++ E + + EKY++ + + + + +
Sbjct: 158 DGKGQVLINNEKDLQ--------EGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITF 209
Query: 280 LYERDCSMQRRYQKVIQ-----------IAPAQDMSVSVRDAITETSVRLAKSLGYSNAG 328
+ + + I PA+ + E ++ +S+ + G
Sbjct: 210 -FP-----------LQENEHRNQILFKTIVPAR---IDKTAEAKEQVNKIIQSIHF--IG 252
Query: 329 T--VEFLLDKDDNFYFIEVNPR 348
T VEF +D ++ Y E+ PR
Sbjct: 253 TFTVEFFIDSNNQLYVNEIAPR 274
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Length = 380 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
P+P L+ + DK + ++ K +P V ++ E FPV+ KA GG
Sbjct: 90 PSPYTLEIIQDKFVQKEFLKKNGIP-----VPEYKLVKDLESDVREFGFPVVQKARKGGY 144
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
GRG+ ++ N+ +E K +E++++ + + V + ++ G++
Sbjct: 145 DGRGVFIIKNEKDLENAIKGE------------TYLEEFVEIEKELAVMVARNEKGEIAC 192
Query: 280 --LYERDCSMQRRYQKVI---QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEF 332
+ E M I IAPA+ + E + + ++L G +E
Sbjct: 193 YPVVE----MYFDEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEG--VGIFGIEM 245
Query: 333 LLDKDDNFYFIEVNPR 348
L K E+ PR
Sbjct: 246 FLTKQGEILVNEIAPR 261
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 6e-10
Identities = 88/663 (13%), Positives = 183/663 (27%), Gaps = 175/663 (26%)
Query: 81 IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNV-----DAIH 135
+ + QD + +K + ++ + + + V + +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLR 88
Query: 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDK-VLARDAAL--KADVPIIPGTTE 192
Y FL E P+ + + L D + K +V + +
Sbjct: 89 INYKFLMSP--IKT-------EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----Q 135
Query: 193 PVTDV-DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEAL--ASFG 249
P + + E V++ G G G VA + + + +
Sbjct: 136 PYLKLRQALLE--LRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 250 KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRD 309
+ P + +++L + + + I S++
Sbjct: 191 NC--------NSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---------SIQA 232
Query: 310 AITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQI 369
+ RL KS Y N LL + V++ ++ + + +I
Sbjct: 233 ELR----RLLKSKPYENC-----LLVLLN------------VQN--AKAWNAFN-LSCKI 268
Query: 370 KI-AQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVD 428
+ + K +T+ A H+ + P + + R
Sbjct: 269 LLTTRFKQVTDFL---------SAATTTHISLDHHSMTLTPDEV-KSLLLK--YLDCRPQ 316
Query: 429 SSCPYPGLQISPDYDSLL-AKIIVHTATYK----SSCEKMRRALE---ETQVSGVTTNLP 480
P L +P S++ I AT+ +C+K+ +E +
Sbjct: 317 DL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 481 FLLNVFDDKKFLSGEALE---TNFIDDNPQ----------LLERNSYQ-TCRDMKILRFI 526
L+VF + L + I + L+E+ + T I
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--- 432
Query: 527 GETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKY--- 583
L + VK N + V + D ++ D +Y
Sbjct: 433 -----------LELKVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLD---QYFYS 475
Query: 584 -----LIKKPQA---NGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLAT--R 633
L +R + F+ +K++H D+T +A S+L T +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFR---FLE--QKIRH----DSTAWNASGSILNTLQQ 526
Query: 634 VRTY----------------DLKKVMMGAGEFVNSVR----KLKHILL---TDTTFRDAH 670
++ Y + + E N + L I L + F +AH
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEE--NLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 671 QSL 673
+ +
Sbjct: 585 KQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 102/684 (14%), Positives = 194/684 (28%), Gaps = 240/684 (35%)
Query: 273 KYGDVVHLYER------DCS-MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS 325
+Y D++ ++E DC +Q + ++ + + +DA++ T +RL +L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGT-LRLFWTLLSK 74
Query: 326 NAGTVE-FL---LDKDDNF------------------YFIEVN--------------PRL 349
V+ F+ L + F Y + + RL
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 350 QVEHTLSEEITGIDVVQSQIKIA------QGKS-LTELGLCQEKITPQ-GCAI------Q 395
Q L + + + + + GK+ + K+ + I
Sbjct: 135 QPYLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 396 CHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYP-----------GLQISPDY-D 443
C+ E Q +L DP + R D S L S Y +
Sbjct: 192 CN-SPETVLEMLQ----KLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 444 SLL-------AKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPFLLN-----VFDDKKF 491
LL AK + SC + L T+ VT L
Sbjct: 246 CLLVLLNVQNAKAW---NAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 492 LSGEALE--TNFIDDNPQLLERNSYQTCRDMKI----LRFIGETLVNGPMTP---LYVNV 542
E ++D PQ L R + L I E++ +G T +VN
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPR---EVL---TTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 543 KPVNVDPVIDRTVSKFET--------SCADFVSDMNERSKIRTDTDEKYLIKKPQANGYR 594
+ +I+ +++ E + F + I P
Sbjct: 353 DKLTT--IIESSLNVLEPAEYRKMFDRLSVFPPS----AHI------------PT----- 389
Query: 595 KLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLA-----TRVRTYDLKKVMMGAGEF 649
LL ++ + V + + L SL+ + + +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHK--------YSLVEKQPKESTISIPSI---------- 431
Query: 650 VNSVRKLKHILLTDTTFRDAHQSLLA--TRVRTYDLKKVSPFVANR--FNNL-YSLEMWG 704
+ + H+S++ +T+D + P ++ ++++ +
Sbjct: 432 ------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH------ 479
Query: 705 GAVSHTCLKFLKEC-PWERLAELRELIPNIPF-QMILRGNS---------------LVGY 747
H LK ER+ R + + F + +R +S L Y
Sbjct: 480 ----H-----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 748 SNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLV--KGMDAVQQVTGGSTIVEATICY 805
Y + RL + I F P NL+ K D ++
Sbjct: 531 KPYICDNDPKYERLVN----AILD-FLP-KIEENLICSKYTDLLRIA------------- 571
Query: 806 AGDLTNPNKKKYSLNYYEDLAKQL 829
L ++ +E+ KQ+
Sbjct: 572 ---LMAEDE-----AIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 6e-07
Identities = 69/504 (13%), Positives = 141/504 (27%), Gaps = 134/504 (26%)
Query: 932 DYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTD-LKAASSEA 990
Y ++ + ++ A + D DV D + + + E + + + +
Sbjct: 15 QYQ--YKDILSVFEDA----FVDNFDCKDVQDM------PKSILSKEEIDHIIMSKDAVS 62
Query: 991 YLYEIPGGQYTNLKFRTMSFGLDF-EDVKRA-YRTANFLLGDIIKCT--PSSKVVADLAI 1046
+ + L + F E+V R Y FL+ I PS
Sbjct: 63 GTLRL----FWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKTEQRQPS--------- 106
Query: 1047 FMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQE-------------- 1092
MT+ + RD + N +++ +V+ +PY + L E
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVS------RLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 1093 --K---VLDSLKDHALERKAEFDPI----MACDYREDEPFKMNKLIFPKATKKFMKFRDE 1143
K LD + ++ K +F I + + +M + + + + R +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSD 218
Query: 1144 FGPVDKLPT--------RIFFHALERKA--------------EFDPIMACDCR-----EN 1176
KL R+ F+ C+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCKILLTTRF 274
Query: 1177 EPVKMNELIFPKATKKFM-KFRDEFGPVDKLPTRIFLNGPNIGEEFSC---EFKTGDTAY 1232
+ V + L T + P + + L + E T +
Sbjct: 275 KQV-TDFLSAATTTHISLDHHSMTLTPDEVK--SLLLK--YLDCRPQDLPREVLTTNPRR 329
Query: 1233 VTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTS-----PSDVFA-FLRLKSER 1286
++ I+E + D + + N L I+++S P++ F RL
Sbjct: 330 LSI--IAESIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAEYRKMFDRLS--- 379
Query: 1287 IFLNGPNIGEE----FSCEFKTGDTAYVTTLSISEHL-NDHGERTVFFLYNGQLRSLDKN 1341
+F +I + D V L + + + + L K
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 1342 KA-----KKL----KLRSKADSDT 1356
+ + + + DSD
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 3e-06
Identities = 83/594 (13%), Positives = 166/594 (27%), Gaps = 169/594 (28%)
Query: 438 ISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV-TTNLPFL-LNVFDDKKFLS-G 494
+ +Y L++ I T + S M + Q + N F NV + +L
Sbjct: 87 LRINYKFLMSPI--KTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 495 EALETNFIDDNPQLLERNSY----------------QTCRDMKILRFIGETLVNGPMTPL 538
+AL L C K+ + + +
Sbjct: 142 QAL---------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-----DFKI--F 185
Query: 539 YVNVKPVNVDPVIDRTVSKFETSCADFVSDMNER----SKIRTDTDE-----KYLIKKPQ 589
++N+K N + + + + R S I+ + L+K
Sbjct: 186 WLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 590 ANGYRKLLQVMGAGEFVTTVRKLKH------VLLTDTTFRDAHQSLLATRVRTYDLKKVM 643
Y L V+ V + +LLT T F+ L A L
Sbjct: 243 ---YENCLLVL---LNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHS 295
Query: 644 MGAGEFVNSVRKLKHILL--TDTTFRD----AHQ------SLLATRVR----------TY 681
M ++K +LL D +D S++A +R
Sbjct: 296 MTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ--MIL 739
+ K++ + + N L E ++ ++RL+ +IP ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEY-------------RKM-FDRLSVFPPSA-HIPTILLSLI 395
Query: 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGST-- 797
+ V S + S+P++ ++ ++
Sbjct: 396 WFDV----IKSDVMVVVNKLHKYSLVEKQ---PKESTISIPSIY--LELKVKLENEYALH 446
Query: 798 --IVEA---TICY-AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAA 851
IV+ + + DL P +Y ++ + L + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---IGHHLKN--------IEHPERMT---- 491
Query: 852 KLLIGSFREKYPNI------LIHVHTHDMAGTGVATTLACVKAGAD-IVDVAADSMSGIC 904
FR + + + H T A + TL +K I D
Sbjct: 492 -----LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---------- 536
Query: 905 SQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWR-----KVRELYAPAHNLLWR 953
+ P +V+ + + + +L Y+ R + ++ AH + R
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLI-CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 6e-06
Identities = 65/429 (15%), Positives = 128/429 (29%), Gaps = 123/429 (28%)
Query: 1048 MTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEK-VLDSLKDHALERK 1106
+ + Y+D++ F+ F K V D K ++ K
Sbjct: 11 TGEHQYQYKDILSV-------------FE-------DAFVDNFDCKDVQDMPK--SILSK 48
Query: 1107 AEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDK--LPTRIFFHALERKAE 1164
E D I+ ++ + K + KF +E ++ L + I +R+
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPS 106
Query: 1165 FDPIMACDCRE---NEPVKMNELIFPKAT----KKFMKFRD---EFGPVDKLPTRIFLNG 1214
M + R+ N+ +F K + ++K R E P + ++G
Sbjct: 107 MMTRMYIEQRDRLYNDNQ-----VFAKYNVSRLQPYLKLRQALLELRPAKN----VLIDG 157
Query: 1215 -PNIG-----------EEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNT 1262
G + C+ + L++ N + TV + L
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLK---NCNSPETVLEMLQKLLYQID 210
Query: 1263 YNLQQILKTSPS------DVFAFLR-LKSERIFLNG---------PNIGEEF--SCEFKT 1304
N S + + A LR L + + N F SC K
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KI 268
Query: 1305 GDTAYVTT--LSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKL----------KLRSKA 1352
+TT +++ L+ T + +L ++ K L L +
Sbjct: 269 ----LLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1353 DSDTAGEIGAPMPGNIIEVKVKVG----QQVKKNDVLIVMSVMKTETLIHASAD----GV 1404
+ P +II ++ G K ++ K T+I +S +
Sbjct: 323 LT------TNPRRLSIIAESIRDGLATWDNWKH------VNCDKLTTIIESSLNVLEPAE 370
Query: 1405 VKEIFVEVG 1413
+++F +
Sbjct: 371 YRKMFDRLS 379
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Length = 334 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 31/225 (13%), Positives = 78/225 (34%), Gaps = 37/225 (16%)
Query: 148 AKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV 207
+ V + + G VL+ D+ L R KA + + P +V E D++
Sbjct: 78 IELVENMKVPYFGNK-RVLRWESDRNLERKWLKKAGIRV------P-----EVYEDPDDI 125
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYID------- 260
E PVI+K GG+G + + + ++ ++ +++Y+
Sbjct: 126 EKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE-DLKNIQIQEYVLGVPVYPH 184
Query: 261 ---RPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAP----AQDMSVSVRDAITE 313
E++++ ++ + + Q + ++ + +R+++
Sbjct: 185 YFYSKVREELELMSIDRRYESNVDAIGR-IPAKDQLEFDMDITYTVIGNIPIVLRESLLM 243
Query: 314 TSVRLAKSL---------GYSNAGTVEFLLDKDDNFYFIEVNPRL 349
+ + + G +E + D F E++ R+
Sbjct: 244 DVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARI 288
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 1e-09
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 46/217 (21%)
Query: 194 VTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDM 253
VT ++ E E+ +P++++A++ GGR M +V + E + +R A++ +
Sbjct: 695 VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYD----EADLRRYFQTAVSVSNDAPV 750
Query: 254 LVEKYIDRPRHIEVQILGDKYG-DVV------HLYER------D--CSMQRRYQKVIQIA 298
L++ ++D ++V + D G V+ H+ E+ D CS+
Sbjct: 751 LLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHI-EQAGVHSGDSACSL----------- 796
Query: 299 PAQDMSVSVRDAITETSVRLAKSL---GYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT- 354
PA +S ++D + + +LA L G N V+F + K++ Y IEVNPR T
Sbjct: 797 PAYTLSQEIQDVMRQQVQKLAFELQVRGLMN---VQFAV-KNNEVYLIEVNPR--AARTV 850
Query: 355 --LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITP 389
+S + TG+ + + ++ GKSL E G+ +E I P
Sbjct: 851 PFVS-KATGVPLAKVAARVMAGKSLAEQGVTKEVIPP 886
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Length = 355 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-09
Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 30/196 (15%)
Query: 161 PAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGG- 219
+V + D++ + K +P P + + + + D + I+K GG
Sbjct: 69 VNRDVFPIIADRLTQKQLFDKLHLPTAP--WQLLAERSEWPAVFDRLGELAIVKRRTGGY 126
Query: 220 GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH 279
GRG + + + +G + +VE+ I+ + + G V
Sbjct: 127 DGRGQWRLRANETEQ--------LPAECYG--ECIVEQGINFSGEVSLVGARGFDGSTVF 176
Query: 280 --LYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT--VEFLLD 335
L ++ + +A Q + + E + + LGY G +E +
Sbjct: 177 YPLTH---NLHQDGILRTSVAFPQ-ANAQQQARAEEMLSAIMQELGY--VGVMAMECFVT 230
Query: 336 KDDNFYFIEVN---PR 348
+ +N PR
Sbjct: 231 PQG----LLINELAPR 242
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Length = 361 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 43/314 (13%), Positives = 98/314 (31%), Gaps = 54/314 (17%)
Query: 66 SEVAIRVARACNEMGIKSVGIYSEQ-DKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124
S ++ + + G +V I + D D+ V + +I
Sbjct: 26 SHTSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDN-------FSDIKNEEI 78
Query: 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADV 184
K +++I +G + G +L+ ++ L +A +
Sbjct: 79 QEKLRELNSIVVPHGSFIAYCGLDNVENSFLVPMFGNR-RILRWESERSLEGKLLREAGL 137
Query: 185 PIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSE- 243
+ P ++++ VI+K GGRG + ++ + + + +
Sbjct: 138 RVPKKYESP-----------EDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRG 186
Query: 244 ALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ---IAPA 300
L + +E+Y+ + + D V L M +RY+ I PA
Sbjct: 187 ILTDEDIANAHIEEYVVGT-NFCIHYFYSPLKDEVEL----LGMDKRYESNIDGLVRIPA 241
Query: 301 QDM---------------SVSVRDAITETSVRLAKSL----------GYSNAGTVEFLLD 335
+D V +R+++ + L G ++ L +
Sbjct: 242 KDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCN 301
Query: 336 KDDNFYFIEVNPRL 349
++ E++ R+
Sbjct: 302 ENLELVVFEMSARV 315
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Length = 344 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 25/203 (12%)
Query: 154 AGLEFIG-PAPNVLKTL---GDKVLARDAALKADVPIIPGTTEPVTD---VDKVKEFCDE 206
GL++ G PA N L ++ K +K + P+ + K
Sbjct: 109 IGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL-GPEKFPLVEQTFFPNHKPMVTA 167
Query: 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIE 266
FPV++K G G V N+ ++ + + K E +ID I
Sbjct: 168 PHFPVVVKLGHAHAGMGKIKVENQLDFQDITS------VVAMAKTYATTEAFIDSKYDIR 221
Query: 267 VQILGDKYGDVVHLYERDCSMQRRYQKVIQ--IAPAQDMSVSVRDAITETSVRLAKSLGY 324
+Q +G Y M+ + A V++ + ++ G
Sbjct: 222 IQKIGSNYK---------AYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGG 272
Query: 325 SNAGTVEFLLDKDDNFYFIEVNP 347
+ V+ + KD Y IEV
Sbjct: 273 LDICAVKAVHSKDGRDYIIEVMD 295
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 8e-09
Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 26/189 (13%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L A A + + D+ +PV +K A G G++ V +
Sbjct: 132 DKSLTYIVAKNAGIATPAFWV--INKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNSA 187
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVV----------- 278
D ++ + A D +L+E+ + + +LG+ VV
Sbjct: 188 DELDYAIESA-------RQYDSKILIEQAVS-GCEVGCAVLGNSAALVVGEVDQIRLQYG 239
Query: 279 -HLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337
++ ++ + + PA D+S R I ET ++ K+LG V+ L +
Sbjct: 240 IFRIHQEVEPEKGSENAVITVPA-DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDN 298
Query: 338 DNFYFIEVN 346
EVN
Sbjct: 299 GRIVLNEVN 307
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 32/192 (16%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L A A + T VT +K+ D++ +PV +K A G G+ VA +
Sbjct: 132 DKSLTYLVARSAGIATPNFWT--VTADEKIPT--DQLTYPVFVKPARSGSSFGVSKVARE 187
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL--------- 280
+ ++ + A D +L+E+ + I ++G+ +
Sbjct: 188 EDLQGAVEAA-------REYDSKVLIEEAVI-GTEIGCAVMGNGPELITGEVDQITLSHG 239
Query: 281 ---YE---RDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
S + PA D+S + R + +T+ + ++LG V+ L
Sbjct: 240 FFKIHQESTPESGSDNSAVTV---PA-DISTTSRSLVQDTAKAVYRALGCRGLSRVDLFL 295
Query: 335 DKDDNFYFIEVN 346
+D EVN
Sbjct: 296 TEDGKVVLNEVN 307
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Length = 307 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 31/188 (16%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK +++ + + D + D++ FP+++K GG G+++V +K
Sbjct: 97 DKNISKKILRYEGIETPDWIELTKME-DLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDK 155
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL---------- 280
D + + + ++++EKYI I I K ++ +
Sbjct: 156 DELISMLETV-----FEWD-SEVVIEKYIK-GEEITCSIFDGKQLPIISIRHAAEFFDYN 208
Query: 281 --YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDD 338
Y+ + ++ +++ + + S+ K+L S V+ ++ D
Sbjct: 209 AKYDDAST---------IEEVI-ELPAELKERVNKASLACYKALKCSVYARVDMMVK-DG 257
Query: 339 NFYFIEVN 346
Y +EVN
Sbjct: 258 IPYVMEVN 265
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 38/196 (19%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK +A+ A + + P D + P+ +K A G G+
Sbjct: 159 DKDMAKRVLRDARLAVAPFVC--FDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQ 216
Query: 227 VANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL----- 280
V DA A D +LVE + R IE +LG+
Sbjct: 217 VRTADAFAAALALA-------LAYDHKVLVEAAVA-GREIECAVLGNAVPHASVCGEVVV 268
Query: 281 ----------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330
Y + + + PA D+ + I + +V+ ++LG + V
Sbjct: 269 HDAFYSYATKYISEHGAEI-------VIPA-DIDAQTQQRIQQIAVQAYQALGCAGMARV 320
Query: 331 EFLLDKDDNFYFIEVN 346
+ L D EVN
Sbjct: 321 DVFLCADGRIVINEVN 336
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 38/196 (19%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMRM 226
DK +A+ A + I P T +T ++ EVE P+ +K A G G+
Sbjct: 140 DKDVAKRLLRDAGLNIAPFIT--LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSK 197
Query: 227 VANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL----- 280
VAN+ ++ A F D ++VE+ I R IE +LG+
Sbjct: 198 VANEAQYQQAVALA-------FEFDHKVVVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249
Query: 281 ----------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330
Y D Q + PA + V D I +++ ++LG + V
Sbjct: 250 NSEFYAYDTKYIDDNGAQV-------VVPA-QIPSEVNDKIRAIAIQAYQTLGCAGMARV 301
Query: 331 EFLLDKDDNFYFIEVN 346
+ L D+ E+N
Sbjct: 302 DVFLTADNEVVINEIN 317
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 20/186 (10%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVK-EFCDEVEFPVILKAAFGGGGRGMRMVAN 229
+K L + A + + + + ++ FP I+K + G G+ +V
Sbjct: 149 NKYLTKLYAKDLGIKTLDYVL--LNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNVVKE 206
Query: 230 KDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM- 287
+ + A F +L+E +I + + K E
Sbjct: 207 EKELIYALDSA-------FEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQE 259
Query: 288 ----QRRYQ--KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFY 341
+++Y + A +S ++ + + E +L L +F + ++ Y
Sbjct: 260 FLDFKQKYLDFSRNKAPKA-SLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVY 317
Query: 342 FIEVNP 347
E+NP
Sbjct: 318 LNEINP 323
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 38/192 (19%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L++ +A VP++P V + + P +K A G G+ V
Sbjct: 118 DKDLSKRVLAQAGVPVVPWVA--VRKGEPPVV---PFDPPFFVKPANTGSSVGISRVERF 172
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHL--------- 280
+E A F D+ +VEK + R +EV +LG+ +G+ +
Sbjct: 173 QDLEAALALA-------FRYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPF 225
Query: 281 ------YERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
Y + + I PA + ++ + E +++ K LG V+F L
Sbjct: 226 YDYETKYTPGRA-------ELLI-PA-PLDPGTQETVQELALKAYKVLGVRGMARVDFFL 276
Query: 335 DKDDNFYFIEVN 346
+ Y E+N
Sbjct: 277 A-EGELYLNELN 287
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Length = 337 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 818 SLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGT 877
S +Y + L + L + + + L D G+L P + S +KYP+I H H+
Sbjct: 167 SPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDL 226
Query: 878 GVATTLACVKAGADIVDV 895
VA +L ++AG +
Sbjct: 227 SVANSLQAIRAGVKGLHA 244
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Length = 345 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 823 EDLAKQ---LVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTG 878
E LA+Q + GA + + D G + + + +F+ + +H H G
Sbjct: 149 EKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLG 208
Query: 879 VATTLACVKAGADIVDVAADSMSGI------CSQPAMGTIVSCLENTDKRCGIDLHDVCD 932
VA ++ V+ G D VD S++G+ + ++ E G DL+ + D
Sbjct: 209 VANSIVAVEEGCDRVDA---SLAGMGAGAGNA---PLEVFIAVAERLGWNHGTDLYTLMD 262
Query: 933 YSSYWRKVREL 943
+ VR L
Sbjct: 263 AAD--DIVRPL 271
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Length = 309 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 27/202 (13%)
Query: 155 GLEFIG-PAPNVLKTL---GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV--- 207
G+++ G P+ N L+++ DK + + G P+ + + +
Sbjct: 93 GMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTL-GGEKFPLIEQTYYPNHREMLTLP 151
Query: 208 EFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEV 267
FPV++K G G V N ++ + + + E +ID I V
Sbjct: 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIAS------VVALTQTYATAEPFIDAKYDIRV 205
Query: 268 QILGDKYGDVVHLYERDCSMQRRYQK---VIQIAPAQDMSVSVRDAITETSVRLAKSLGY 324
Q +G+ Y + R A +++ D ++ G
Sbjct: 206 QKIGNNYK----------AYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDACSEMFGG 255
Query: 325 SNAGTVEFLLDKDDNFYFIEVN 346
+ V+ + KD Y EV
Sbjct: 256 LDICAVKAVHGKDGKDYIFEVM 277
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 6e-08
Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 53/204 (25%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE-----FPVILKAAFGGGGRGMR 225
+K L + +P++ T ++ D + + + +KA G
Sbjct: 140 EKDLTKTVLRAGGIPVVDWHT--LSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATL 197
Query: 226 MVANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGD------------ 272
V + + K F DD ++VE I R IE +LG+
Sbjct: 198 PVKTETEFTKAVKEV-------FRYDDRLMVEPRIR-GREIECAVLGNGAPKASLPGEII 249
Query: 273 ----------KYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL 322
KY D D+S SV I + ++ K +
Sbjct: 250 PHHDYYSYDAKYLDP--------------NGATTTTSV-DLSESVTKQIQQIAIDAFKMV 294
Query: 323 GYSNAGTVEFLLDKDDNFYFIEVN 346
S V+F + ++ E+N
Sbjct: 295 HCSGMARVDFFVTPNNKVLVNEIN 318
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 171 DKVLARDAALKADVPIIPGTT----EPVTDVDKV-KEFCDEVEFPVILKAAFGGGGRGMR 225
DK++ + +P +P + E + K D++ +PV +K A G G+
Sbjct: 129 DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGIS 188
Query: 226 MVANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDVVHLYERD 284
N+ ++E K A F D +++E+ ++ R IEV +LG+ Y + E
Sbjct: 189 KCNNEAELKEGIKEA-------FQFDRKLVIEQGVN-AREIEVAVLGNDYPEATWPGEVV 240
Query: 285 CSM-----QRRYQ--KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD 337
+ + +Y+ KV PA D+ V+ + ++ K+ S +F + +D
Sbjct: 241 KDVAFYDYKSKYKDGKVQLQIPA-DLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTED 299
Query: 338 DNFYFIEVN 346
+ Y E N
Sbjct: 300 NQIYINETN 308
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 54/204 (26%)
Query: 171 DKVLARDAALKA-DVPIIPGTTEPVTDVDKVKEFCDEVE----FPVILKAAFGGGGRGMR 225
DK+ A +P + + + + ++ EVE +PV +K A G G+
Sbjct: 161 DKITTNQVLESATTIPQVAYVA--LIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 218
Query: 226 MVANKDAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGD------------ 272
N+ +++ A D +L+E+ +D R IEV ILG+
Sbjct: 219 KAENRTDLKQAIALA-------LKYDSRVLIEQGVD-AREIEVGILGNTDVKTTLPGEIV 270
Query: 273 ----------KYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL 322
KY D K+ PA ++ + + + + + ++L
Sbjct: 271 KDVAFYDYEAKYID---------------NKITMAIPA-EIDPVIVEKMRDYAATAFRTL 314
Query: 323 GYSNAGTVEFLLDKDDNFYFIEVN 346
G +F L +D Y E+N
Sbjct: 315 GCCGLSRCDFFLTEDGKVYLNELN 338
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 6e-07
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I++ VK G +V ++DVL + K I + G V EI V G ++ L
Sbjct: 17 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 76
Query: 1426 DV 1427
D
Sbjct: 77 DA 78
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Length = 295 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 1e-06
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
+ +QL G + L D G P ++ + P + H HD G +
Sbjct: 159 SVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIR 218
Query: 884 ACVKAGADIVDVAADSMSGI--CSQP----AMGTI-----VSCLENTDKRCGIDLHDVCD 932
++ G + D S+ G+ C P A G + V L G+DL +
Sbjct: 219 VSLEKGLRVFDA---SVGGLGGC--PFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRS 273
Query: 933 YSSYWRKV-RELYAPAHNLL 951
+ + + ++ A H+
Sbjct: 274 AGLFTQALRQDKAALEHHHH 293
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 373 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 26/192 (13%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK + +P+ ++ C+ + PV +K A GG G+ V++
Sbjct: 151 DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSW 210
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPRHIEVQILGDKYGDV-------VHLYE 282
D + RA D ++VE I R +E +L G + + +
Sbjct: 211 DQLPAAVARA-------RRHDPKVIVEAAIS-GRELECGVLEMPDGTLEASTLGEIRVAG 262
Query: 283 RDCSMQRRY--------QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334
Y PA + V +AI + ++R ++ V+F L
Sbjct: 263 VRGREDSFYDFATKYLDDAAELDVPA-KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 321
Query: 335 DKDDNFYFIEVN 346
DD E+N
Sbjct: 322 T-DDGPVINEIN 332
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-06
Identities = 59/346 (17%), Positives = 106/346 (30%), Gaps = 35/346 (10%)
Query: 10 TTMLGFLGATRHAMKSLTRWIRPNLLVQQQRFPVRRCGCKPPPPPKTMEKILIANRSEVA 69
+ GF + +A+K T Q G ++I
Sbjct: 72 SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGS----GGAGRGGAAARVLLVIDEPHTDW 127
Query: 70 IRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNN 129
+ + G + I EQ +FS G + N +++ ++
Sbjct: 128 AKYFKGKKIHG--EIDIKVEQAEFSDLNLVA---HANGGFSVDMEVLRNGVKVV---RSL 179
Query: 130 NVDAIHPGYGFLSEREDFAKAVIGAGLEFIG-PAPNVLKTLG---DK--VLARDAALKAD 183
D + S + + GL++ G P+ N L ++ DK V A+ L
Sbjct: 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKK 239
Query: 184 VPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSE 243
+ T KE +PV++K G G V N+ ++
Sbjct: 240 LGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQD------IA 293
Query: 244 ALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ--IAPAQ 301
++ + K E +ID + VQ +G Y M+ + A
Sbjct: 294 SVVALTKTYATAEPFIDAKYDVRVQKIGQNYK---------AYMRTSVSGNWKTNTGSAM 344
Query: 302 DMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP 347
+++ D ++ G + VE L KD + IEV
Sbjct: 345 LEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVG 390
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Length = 307 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
L++ L E G L L D G P + ++ + ++P I +H HD GT +A +
Sbjct: 161 RLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMV 220
Query: 884 ACVKAGADIVD 894
++ G + D
Sbjct: 221 TALQMGITVFD 231
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Length = 298 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
++ K+ G + L D G+ P K ++ + ++ P + VH HD G +A TL
Sbjct: 160 EVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTL 219
Query: 884 ACVKAGADIVD 894
++ G +VD
Sbjct: 220 MALQMGVSVVD 230
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Length = 302 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL 883
+A++L + G + L D G+ A + LI + + P + H HD G +A
Sbjct: 163 WVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIY 222
Query: 884 ACVKAGADIVD 894
A + G + D
Sbjct: 223 ASLLEGIAVFD 233
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Length = 80 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV 1416
P P + ++VGQ+V D L ++ MK I A G VK I VE G V
Sbjct: 18 TPSPDA--KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPV 70
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* Length = 382 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 823 EDLAK--QLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGV 879
+DL + V + L D G+ P L+ R + I H H+ G +
Sbjct: 145 QDLLAVYEAVAPYVDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAI 204
Query: 880 ATTLACVKAGADIVDVAADSMSGI 903
A ++AGA VD ++ GI
Sbjct: 205 ANAYEAIEAGATHVDT---TILGI 225
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Length = 370 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-04
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+E+GA + + D G P + K PN + H H+ G VA +LA +
Sbjct: 167 IEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAAL 226
Query: 887 KAGADIVDV 895
K GA V+
Sbjct: 227 KGGARQVEC 235
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I+ VK G V+K+ L+ + K I + G + +I G V ++ +
Sbjct: 16 GEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQI 75
Query: 1426 D 1426
D
Sbjct: 76 D 76
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
+ E VK G V + D + + K I + DGV+K+++ + +V +
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
Query: 1426 DV 1427
+
Sbjct: 79 ET 80
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Length = 423 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889
+ G + + D G P LI + R + I H H+ G +A ++AG
Sbjct: 190 DKIGVNRVGIADTVGCATPRQVYDLIRTLRGV-VSCDIECHFHNDTGMAIANAYCALEAG 248
Query: 890 ADIVDVAADSMSGI 903
A +D S+ GI
Sbjct: 249 ATHIDT---SILGI 259
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Length = 293 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+++GA V+ + D G PT L R + + H HD G A LA +
Sbjct: 160 IDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAI 219
Query: 887 KAGADIVDV 895
+ GA V+
Sbjct: 220 ENGARRVEG 228
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Length = 325 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACV 886
+E+GA V+ + D G + P I + NI ++ H H+ G A +LA +
Sbjct: 161 IEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAAL 220
Query: 887 KAGADIVDV 895
+ GA V+
Sbjct: 221 QNGARQVEC 229
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1427 | |||
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 100.0 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 100.0 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 100.0 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 100.0 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 100.0 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 100.0 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 100.0 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 100.0 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 100.0 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 100.0 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 100.0 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 100.0 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 100.0 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 100.0 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 100.0 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 100.0 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 100.0 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 100.0 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 100.0 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 100.0 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 100.0 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 100.0 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 100.0 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 100.0 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 100.0 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 100.0 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 100.0 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 100.0 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 100.0 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 100.0 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 100.0 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 100.0 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 100.0 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 100.0 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 100.0 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 100.0 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 100.0 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 100.0 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 100.0 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 100.0 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 100.0 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 100.0 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 100.0 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 100.0 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 100.0 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 100.0 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 100.0 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 100.0 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 99.97 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 99.97 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 99.97 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 99.97 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 99.97 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 99.97 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 99.96 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 99.96 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 99.96 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 99.96 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 99.96 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 99.96 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 99.95 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.95 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 99.94 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.94 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 99.93 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.9 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 99.88 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.82 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.78 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 99.76 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 99.75 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 99.75 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 99.71 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.71 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 99.7 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.61 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.59 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.58 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.55 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 99.54 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 99.47 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 99.41 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 99.35 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 99.35 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 99.35 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 99.34 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 99.33 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.31 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 99.31 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 99.29 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 99.28 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 99.28 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 99.27 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 99.25 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 99.24 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.24 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.24 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.22 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 99.2 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 99.19 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 99.18 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 99.16 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 99.13 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.11 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 99.1 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 99.1 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 98.99 | |
| 1zko_A | 136 | Glycine cleavage system H protein; TM0212, structu | 98.87 | |
| 3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase comp | 98.78 | |
| 1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitoch | 98.71 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 98.67 | |
| 1hpc_A | 131 | H protein of the glycine cleavage system; transit | 98.39 | |
| 3a7l_A | 128 | H-protein, glycine cleavage system H protein; lipo | 98.24 | |
| 1onl_A | 128 | Glycine cleavage system H protein; hybrid barrel-s | 98.2 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.03 | |
| 3ne5_B | 413 | Cation efflux system protein CUSB; transmembrane h | 97.78 | |
| 3lnn_A | 359 | Membrane fusion protein (MFP) heavy metal cation Z | 97.75 | |
| 2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, | 97.6 | |
| 3klr_A | 125 | Glycine cleavage system H protein; antiparallel be | 97.59 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 97.56 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 97.52 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 97.43 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 97.4 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 97.37 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 97.36 | |
| 1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransf | 97.32 | |
| 1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, | 97.3 | |
| 3mxu_A | 143 | Glycine cleavage system H protein; seattle structu | 97.28 | |
| 3tzu_A | 137 | GCVH, glycine cleavage system H protein 1; ssgcid, | 97.24 | |
| 2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase | 97.23 | |
| 1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phospho | 97.13 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 96.98 | |
| 4dk0_A | 369 | Putative MACA; alpha-hairpin, lipoyl, beta-barrel, | 96.93 | |
| 3cdx_A | 354 | Succinylglutamatedesuccinylase/aspartoacylase; str | 96.91 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 96.85 | |
| 3hgb_A | 155 | Glycine cleavage system H protein; ssgcid, niaid, | 96.58 | |
| 3na6_A | 331 | Succinylglutamate desuccinylase/aspartoacylase; st | 96.55 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 96.39 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 96.38 | |
| 3mwd_A | 425 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 96.35 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 96.11 | |
| 3fmc_A | 368 | Putative succinylglutamate desuccinylase / aspart; | 96.08 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 96.02 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 95.86 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 95.76 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 95.67 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 95.63 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 95.61 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 95.29 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 95.27 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 95.26 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 94.98 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 94.92 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 94.88 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 94.83 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 94.83 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 94.81 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 94.66 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 94.62 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 94.57 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 94.53 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 94.52 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 94.41 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 94.23 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 94.19 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 94.09 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 93.87 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 93.72 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 93.6 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 93.56 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 93.49 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 93.49 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 93.48 | |
| 2qj8_A | 332 | MLR6093 protein; structural genomics, joint center | 93.47 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 93.38 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 93.22 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 93.09 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 92.86 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 92.86 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 92.79 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 92.7 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 92.68 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 92.49 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.48 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 92.36 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 92.32 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 92.18 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 92.14 | |
| 2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase | 92.11 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.08 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 91.95 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 91.86 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 91.81 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 91.78 | |
| 1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransf | 91.68 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 91.6 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 91.33 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 91.08 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.06 | |
| 1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phospho | 90.94 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 90.92 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 90.78 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 90.77 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 90.72 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 90.64 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 90.54 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 90.48 | |
| 3our_B | 183 | EIIA, phosphotransferase system IIA component; exh | 90.44 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 90.2 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 90.16 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 90.08 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 90.02 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 89.86 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 89.83 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 89.79 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 89.73 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 89.63 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 89.63 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 89.62 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 89.51 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 89.49 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 89.48 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 89.47 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 89.41 | |
| 3ngf_A | 269 | AP endonuclease, family 2; structural genomics, se | 89.36 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 89.22 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 89.06 | |
| 3our_B | 183 | EIIA, phosphotransferase system IIA component; exh | 89.02 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 88.77 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 88.61 | |
| 3lnn_A | 359 | Membrane fusion protein (MFP) heavy metal cation Z | 88.52 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 88.49 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 88.44 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 88.34 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 88.3 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 88.18 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 88.17 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 88.12 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 88.11 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 88.05 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 88.02 | |
| 2xha_A | 193 | NUSG, transcription antitermination protein NUSG; | 87.99 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 87.96 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 87.85 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 87.75 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 87.74 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 87.71 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 87.69 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 87.68 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 87.62 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 87.21 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 87.17 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 87.04 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 86.91 | |
| 3qxb_A | 316 | Putative xylose isomerase; structural genomics, jo | 86.84 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 86.77 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 86.65 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 86.65 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 86.38 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 86.37 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 86.35 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 86.35 | |
| 1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, | 86.32 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 86.23 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 86.18 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 86.14 | |
| 1lt8_A | 406 | Betaine-homocysteine methyltransferase; homocystei | 85.89 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 85.79 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 85.71 | |
| 2xha_A | 193 | NUSG, transcription antitermination protein NUSG; | 85.68 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 85.47 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 85.27 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 85.22 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 85.2 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 85.18 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 85.09 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 85.0 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 84.97 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 84.92 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 84.9 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 84.86 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 84.65 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 84.55 | |
| 3d4r_A | 169 | Domain of unknown function from the PFAM-B_34464; | 84.47 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 84.22 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 84.05 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 83.98 | |
| 3ne5_B | 413 | Cation efflux system protein CUSB; transmembrane h | 83.96 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 83.92 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 83.68 | |
| 3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase comp | 83.67 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 83.63 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 83.59 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 83.56 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 83.5 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 83.43 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 83.34 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 83.29 | |
| 4dk0_A | 369 | Putative MACA; alpha-hairpin, lipoyl, beta-barrel, | 83.26 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 83.09 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 83.01 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 82.94 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 82.93 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 82.9 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 82.75 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 82.75 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 82.61 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 82.59 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 82.54 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 82.54 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 82.54 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 82.46 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 82.4 | |
| 1k77_A | 260 | EC1530, hypothetical protein YGBM; TIM barrel, str | 82.32 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 82.28 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 82.27 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 82.26 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 82.24 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 82.22 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 82.16 | |
| 2ocz_A | 231 | 3-dehydroquinate dehydratase; structural genomics, | 82.1 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 82.01 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 81.89 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 81.87 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 81.8 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 81.76 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 81.75 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 81.72 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 81.71 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 81.54 | |
| 2xhc_A | 352 | Transcription antitermination protein NUSG; 2.45A | 81.53 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 81.48 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 81.48 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 81.39 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 81.29 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 81.23 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 81.14 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 81.01 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 80.99 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 80.75 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 80.68 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 80.68 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 80.6 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 80.56 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 80.53 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 80.53 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 80.45 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 80.42 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 80.38 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 80.36 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 80.33 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 80.26 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 80.15 |
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-221 Score=2167.03 Aligned_cols=1135 Identities=44% Similarity=0.761 Sum_probs=1053.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+||+||||+|||++|++++|+|+++|++++++++++|..+.|.++||++|+++.+..+..+|+|++.|+++|+++++|+|
T Consensus 2 ~~~kkVLIagrGeia~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI 81 (1150)
T 3hbl_A 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAI 81 (1150)
T ss_dssp -CCCEEEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999999999999999999999999999999998666778899999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
||||||++|++.++++|+++|++|+||++++++.++||..+|++|+++|||+|+++...+.+.+++.++++++|||+|||
T Consensus 82 ~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGyPvVVK 161 (1150)
T 3hbl_A 82 HPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 161 (1150)
T ss_dssp ECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSSEEEE
T ss_pred EECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999997556889999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|+.|+||+||++|++.+||.++++.+.+++...|+++.+|+|+||++++|++|++++|++|+++++++|+|+++++|++.
T Consensus 162 P~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~ 241 (1150)
T 3hbl_A 162 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKV 241 (1150)
T ss_dssp CCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEE
T ss_pred eCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEEeeccceeccCcee
Confidence 99999999999999999999999988777777788899999999997799999999999999999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
++.+|++.++++.+++|.+.+.++++++||+|++|+||+++++ ++||||||||+|++|+++|+++|+|++++++++++|
T Consensus 242 ~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d-~~y~iEINpR~~g~~~vte~~tGvDlv~~~i~ia~G 320 (1150)
T 3hbl_A 242 VEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAG 320 (1150)
T ss_dssp EEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-EEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-eEEEEEEeCCCCCCcceeehhcCCCHHHHHHHHHCC
Confidence 9999998899999999999999999999999999999999987 799999999999999999999999999999999999
Q ss_pred CCCcc--ccc-cccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 375 KSLTE--LGL-CQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 375 ~~l~~--l~l-~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
++|+. +++ .|..+..+||||+||+|+|||.++|.|++|+|+.+++|+++|+|+|+++++.|+.|+++|||++|||++
T Consensus 321 ~~L~~~~~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~v~~~yds~lakvi~ 400 (1150)
T 3hbl_A 321 ADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 400 (1150)
T ss_dssp CCTTSTTTCCCCGGGCCCCSEEEEEEECSEEGGGTSEECCCCCCEEECCCCTTEEEEESSCSSSCCCCTTSCCCSEEEEE
T ss_pred CCCCccccccccccccccceEEEEEEEeccCCccccCCCCceEEEEEcCCCCceeccccccccCCEeCCcCCCceeEEEE
Confidence 99874 344 577889999999999999999999999999999999999999999987789999999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 452 HTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
||+|+++|++||.+||++++|+|++|||+||+++|.||+|++| +++|+||++||+||++...+ +|++|||+|+++++|
T Consensus 401 ~g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 478 (1150)
T 3hbl_A 401 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSG-DYTTKFIEETPELFDIQPSL-DRGTKTLEYIGNVTI 478 (1150)
T ss_dssp EESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHHCHHHHHS-CCCTTHHHHCGGGGCCCCCC-CHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHhceEEeCccCCHHHHHHHhCCHHHcCC-CcccchhhCCHhhccCCCcc-chHHHHHHHhhheee
Confidence 9999999999999999999999999999999999999999999 99999999999999998776 999999999999999
Q ss_pred cCCCCCCcccCCCCCCCCCcccccCcccccccccccccccccccccCccccccccCCCC-CchHHHHHhhCCCcchheee
Q psy15244 532 NGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQA-NGYRKLLQVMGAGEFVTTVR 610 (1427)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 610 (1427)
||+++... ..+|....|.+|.+.. ..|+| .||||+|+++||
T Consensus 479 ~~~~~~~~-~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~-------- 520 (1150)
T 3hbl_A 479 NGFPNVEK-RPKPDYELASIPTVSS-----------------------------SKIASFSGTKQLLDEVGP-------- 520 (1150)
T ss_dssp HCCTTSCC-CCCCCCCCCCCCCCCH-----------------------------HHHHTCCCHHHHHHHHHH--------
T ss_pred cCCCcccC-CCCCCCCCCCCCCCCC-----------------------------CCCCCCCCHHHHHHhhCH--------
Confidence 99874332 2345555566664321 01445 899999999999
Q ss_pred ccceeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHH
Q psy15244 611 KLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFV 690 (1427)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l 690 (1427)
++|++||+++++|+|+||||||||||++++||+++||++||+.|
T Consensus 521 ------------------------------------~~~~~~~~~~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L 564 (1150)
T 3hbl_A 521 ------------------------------------KGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKT 564 (1150)
T ss_dssp ------------------------------------HHHHHHHTTCSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHhCCceEEEECccchhhccCCCcCCCHHHHHHHHHHH
Confidence 69999999999999999999999999998999999999999999
Q ss_pred HhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEE
Q psy15244 691 ANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIF 770 (1427)
Q Consensus 691 ~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~ 770 (1427)
+++..|+++||+|||++|+++++|++++||++++.+++.+||+++|||+||+|.+||++||+|++++|+++|+++|+|+|
T Consensus 565 ~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~i 644 (1150)
T 3hbl_A 565 ADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVF 644 (1150)
T ss_dssp HHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred HHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHHHHHHHHhCCcCEE
Confidence 99666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHH
Q psy15244 771 RVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP-NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPT 849 (1427)
Q Consensus 771 rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p-~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~ 849 (1427)
|||+++||+++++.+++.+++.|. .+++++||++|+.+| +.++|+++||+++++++.++|||+|+||||+|+++|.
T Consensus 645 rif~~~sd~~~~~~~~~~~~e~g~---~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~ 721 (1150)
T 3hbl_A 645 RIFDSLNWVDQMKVANEAVQEAGK---ISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPK 721 (1150)
T ss_dssp EEECTTCCGGGGHHHHHHHHHTTC---EEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH
T ss_pred EEEeeCCHHHHHHHHHHHHHHHhh---heeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHH
Confidence 999999999999999999999999 999999999988887 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhh
Q psy15244 850 AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHD 929 (1427)
Q Consensus 850 ~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~ 929 (1427)
+++++|++||+++ ++||++|+|||+|||+||+++|++|||++||+|++|||||||||+||+|+++|+.+|++|++|+
T Consensus 722 ~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~ai~GlG~~~gn~~lE~lv~~L~~~g~~tgidl-- 798 (1150)
T 3hbl_A 722 AAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDI-- 798 (1150)
T ss_dssp HHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCSBTSCCBHHHHHHHTTTSSCCBCSCH--
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEEEeccccCCCCCCccHHHHHHHHHhcCCCcCccH--
Confidence 9999999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHH
Q psy15244 930 VCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMS 1009 (1427)
Q Consensus 930 L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~ 1009 (1427)
..+...++||.+++..|.+|+ +.+++.+.+||.|||||||+|||++||++
T Consensus 799 -----------------------------~~l~~~~~~~~~~~~~y~~~~-~~~~~~~~~v~~~~~PGg~~snl~~q~~~ 848 (1150)
T 3hbl_A 799 -----------------------------EGMESLSHYWSTVRTYYSDFE-SDIKSPNTEIYQHEMPGGQYSNLSQQAKS 848 (1150)
T ss_dssp -----------------------------HHHHHHHHHHHHHHGGGGGGC-CSCCSCCTTHHHHCCCSSHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHhhhcccc-CCCCCCccceEEeeCCCchhhHHHHHHHH
Confidence 555566777778899999999 88999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCC
Q psy15244 1010 FGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFP 1087 (1427)
Q Consensus 1010 ~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~ 1087 (1427)
+|+ +|+||+++|++||++||||||||||||||||||+|||+|||+++++.++.++++||+||++|++|+||+||+|||
T Consensus 849 ~g~~~~~~~v~~~~~~v~~~~g~~~~vtp~sq~vg~~a~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~G~~g~~~~~~~ 928 (1150)
T 3hbl_A 849 LGLGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFN 928 (1150)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHHHHTTCCTTHHHHSGGGCCCCHHHHHHTTTSSCCCTTCCC
T ss_pred CCcHhHHHHHHHHHHHHHHHcCCCceECchhHHHHHHHHHHHHcCCChhhhhcccccccCCHHHHHHhCcCCCCCCCCCC
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCC
Q psy15244 1088 KKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDP 1167 (1427)
Q Consensus 1088 ~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~ 1167 (1427)
++|+++||+|++++++||+++ ++|.||+++ ++ ++.+++| .+
T Consensus 929 ~~~~~~~~~~~~~~~~rp~~~-----------~~~~d~~~~-----~~---~~~~~~~--------------------~~ 969 (1150)
T 3hbl_A 929 KDLQAVILKGQEALTARPGEY-----------LEPVDFEKV-----RE---LLEEEQQ--------------------GP 969 (1150)
T ss_dssp HHHHHHHHTTCCCCSSCGGGG-----------SCCCCHHHH-----HH---HHHHHSC--------------------SC
T ss_pred HHHHHHHhcCCCCccCCcccc-----------CChhhHHHH-----HH---HHHHhhC--------------------CC
Confidence 999999999999999999999 999998888 87 7777777 35
Q ss_pred ccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcc
Q psy15244 1168 IMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGE 1247 (1427)
Q Consensus 1168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~ 1247 (1427)
.++|| +|+|+|||+++.+|+++|++|||++.|||+.||+|+++|+++.+++++||++.|+
T Consensus 970 ~~~~~-------~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~------------- 1029 (1150)
T 3hbl_A 970 VTEQD-------IISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIK------------- 1029 (1150)
T ss_dssp CCHHH-------HHHHHHSHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEEEEEETTEEEEEE-------------
T ss_pred CCHHH-------HHHHHcCCHHHHHHHHHHHhcCCcccCCchhhhcCCCCCceEEEEccCCcEEEEE-------------
Confidence 78999 9999999999999999999999999999999999999999999999999999998
Q ss_pred eeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEE
Q psy15244 1248 RTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTV 1327 (1427)
Q Consensus 1248 r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v 1327 (1427)
+.++++++.+ |.+++
T Consensus 1030 ----------------------------------------------------------------l~~~~~~~~~-g~~~~ 1044 (1150)
T 3hbl_A 1030 ----------------------------------------------------------------LETISEPDEN-GNRTI 1044 (1150)
T ss_dssp ----------------------------------------------------------------EEEECCCCTT-SEEEE
T ss_pred ----------------------------------------------------------------ecccCCCCCC-CceEE
Confidence 4455554444 77777
Q ss_pred EEEECCEEeEe---chhhhhhhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeE
Q psy15244 1328 FFLYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGV 1404 (1427)
Q Consensus 1328 ~~elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~ 1404 (1427)
+|++||+.+.| |..........+++++.++.+|.|||+|+|++|+|++||.|++||+|++|||||||++|+||.+|+
T Consensus 1045 ~~e~nG~~~~v~v~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~ 1124 (1150)
T 3hbl_A 1045 YYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGV 1124 (1150)
T ss_dssp EEEETTEEEEEEEECCCSSSCCCCCCBCCTTCSSEEECSSSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEE
T ss_pred EEEECCeEEEEecccccccccccccccCCCCCCceeecCceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeE
Confidence 77777777776 333222333456788889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeCCCCEEEEEe
Q psy15244 1405 VKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1405 V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|++++|++|+.|+.|++|++|+
T Consensus 1125 v~~i~v~~G~~V~~g~~l~~i~ 1146 (1150)
T 3hbl_A 1125 IKQVTVNNGDTIATGDLLIEIE 1146 (1150)
T ss_dssp EEEECCCTTCEECTTBEEEEEC
T ss_pred EEEEEeCCCCEeCCCCEEEEEe
Confidence 9999999999999999999986
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-209 Score=2061.21 Aligned_cols=1135 Identities=43% Similarity=0.727 Sum_probs=986.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCC------CCcccCCCCHHHHHHHHHh
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKG------MPPVAAYLNIPEIICIAKN 128 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~------~~~~~~yldi~~Ii~ia~~ 128 (1427)
.|++||||+||||||++++|+|+++|++++++++++|..++|.++||++|+++.. ..+..+|+|++.|+++|++
T Consensus 12 ~~~~~~lianrGeia~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~ 91 (1165)
T 2qf7_A 12 GPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKL 91 (1165)
T ss_dssp CCCCEEEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHH
T ss_pred CcceEEEEcCCcHHHHHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999888999999999999743 3566789999999999999
Q ss_pred cCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcC
Q psy15244 129 NNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVE 208 (1427)
Q Consensus 129 ~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iG 208 (1427)
+++|+|||||||++|++.+++.|++.|++|+||++++++.++||..+|++|+++|||+|++....+.+.+++.++++++|
T Consensus 92 ~~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~ig 171 (1165)
T 2qf7_A 92 SGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIG 171 (1165)
T ss_dssp HTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC---------------------
T ss_pred hCCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999986335788999999999999
Q ss_pred CcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccc
Q psy15244 209 FPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288 (1427)
Q Consensus 209 yPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~q 288 (1427)
||+||||..|+||+||++|++.+||.++++.+.+++...|+++.++||+||++++|++|++++|++|+++++++|+|+++
T Consensus 172 yPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~ 251 (1165)
T 2qf7_A 172 YPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQ 251 (1165)
T ss_dssp ------------------------------------------------CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEEEeecccce
Confidence 99999999999999999999999999999999888878888899999999998899999999999999999999999999
Q ss_pred cccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEc-CCCcEEEEeeCCCCCCchhHHHHHhCCCHHHH
Q psy15244 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQS 367 (1427)
Q Consensus 289 r~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd-~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~ 367 (1427)
+++++.++.+|++.++++.+++|.+.+.++++++||+|++++||+++ ++|++||||||||+|++|+++++++|+|++++
T Consensus 252 r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~~~vte~~tGiDl~~~ 331 (1165)
T 2qf7_A 252 RRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKA 331 (1165)
T ss_dssp ETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHH
T ss_pred ecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcCCCCCchhhhhhhCCCHHHH
Confidence 99999999999988999999999999999999999999999999999 78899999999999999999999999999999
Q ss_pred HHHHHcCCCCccc--cc-cccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCcc
Q psy15244 368 QIKIAQGKSLTEL--GL-CQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDS 444 (1427)
Q Consensus 368 ~i~iA~G~~l~~l--~l-~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds 444 (1427)
++++++|.+++++ ++ .|+.+..+|||++|||++|+|.++|.|++|+|..+++|+++|+|++.+..+.|+.|+++|||
T Consensus 332 ~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~~~~~~gvrvd~g~~~~G~~v~~~~d~ 411 (1165)
T 2qf7_A 332 QIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDP 411 (1165)
T ss_dssp HHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEECCCCTTEEEECCSCCTTCEECSSSCC
T ss_pred HHHHHcCCCccccccccccccccccCcEEEEEEEEecCCccCcCCCCcEEEEEecCCCCceEeeeccCCCCCEeCCCCCC
Confidence 9999999998754 23 46667789999999999999999999999999999999889999996555789999999999
Q ss_pred ceEEEEEEcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcCCcchhHHHHHHH
Q psy15244 445 LLAKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILR 524 (1427)
Q Consensus 445 ~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~ 524 (1427)
++|+|+++|+|+++|+++|+++|++++|+|++|||+||+++|.||+|++| +++|+||+++|+||...... +|++|||+
T Consensus 412 ~l~~vi~~g~t~~eA~~~~~~al~~i~i~G~~tni~~~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~-~~~~~~~~ 489 (1165)
T 2qf7_A 412 LLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDN-SYTTRFIDTTPELFQQVKRQ-DRATKLLT 489 (1165)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHTSHHHHTT-CCCTTTTTTCGGGGCCCCCC-CHHHHHHH
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhcEEEecccCCHHHHHHHhcCHHhhcC-CccchhhhcChhhhcCcccc-chHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999998877 99999999
Q ss_pred HHHHhhhcCCCCCCcccCCCCCC--CCCcccccCcccccccccccccccccccccCccccccccCCCCCchHHHHHhhCC
Q psy15244 525 FIGETLVNGPMTPLYVNVKPVNV--DPVIDRTVSKFETSCADFVSDMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGA 602 (1427)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1427)
||+|++|||+++.... .+|... .|.+|.+.. ..+|.||||+|+++||
T Consensus 490 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 538 (1165)
T 2qf7_A 490 YLADVTVNGHPEAKDR-PKPLENAARPVVPYANG------------------------------NGVKDGTKQLLDTLGP 538 (1165)
T ss_dssp HHHHHHHHCCTTTTTS-CCCCSSCCCCCCCCC-C------------------------------CSCCCCHHHHHHHHCH
T ss_pred HHHHheecCCCccccC-CCCCCCcCCCCCCCCCC------------------------------CCCCCCHHHHHHhhCH
Confidence 9999999998875543 334333 355654211 1237999999999999
Q ss_pred CcchheeeccceeEeecccccccchhhhhccccccccccccccccccccccccCCCeEEeecCcccCCCCCCCcccCHHH
Q psy15244 603 GEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAGEFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYD 682 (1427)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d 682 (1427)
++|++|++++++|+|+|||||||+||+++++|+++|
T Consensus 539 --------------------------------------------~~~~~~~~~~~~v~i~DtTLRDG~Qs~~~~~~~~~d 574 (1165)
T 2qf7_A 539 --------------------------------------------KKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYD 574 (1165)
T ss_dssp --------------------------------------------HHHHHHHHHCSSCEEEECTTTHHHHHHHTTCCCHHH
T ss_pred --------------------------------------------HHHHHHhhcCCceEEEecccccccccCCcccCCHHH
Confidence 699999999999999999999999999888999999
Q ss_pred HHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHH
Q psy15244 683 LKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLA 762 (1427)
Q Consensus 683 ~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a 762 (1427)
|++||+.|+++..|+++||+||||+|++|+||++++||++++.+++.+||+++|||+||+|++||++||+|++++|+++|
T Consensus 575 kl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~~i~~a 654 (1165)
T 2qf7_A 575 IARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQA 654 (1165)
T ss_dssp HHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHHHHHHH
Confidence 99999999996568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccc
Q psy15244 763 SQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDM 842 (1427)
Q Consensus 763 ~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt 842 (1427)
+++|+|+||||+++||+++|+.+++++++.|. .+++++||++||.||+++.++++||+++++++.++|||+|+||||
T Consensus 655 ~~~g~d~irif~sl~~~~~~~~~i~~~~~~g~---~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT 731 (1165)
T 2qf7_A 655 AKGGIDLFRVFDCLNWVENMRVSMDAIAEENK---LCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDM 731 (1165)
T ss_dssp HHHTCCEEEEECTTCCGGGGHHHHHHHHHTTC---EEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEET
T ss_pred HhcCcCEEEEEeeHHHHHHHHHHHHHHHhccc---eEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 99999999999999999999999999999999 999999999999999877799999999999999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 843 AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 843 ~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
+|+++|.+++++|++||+++ +++|++|||||+|||+||+++|++|||++||+|++|||||+|||+||+|+++|+.+|++
T Consensus 732 ~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti~GlGe~~Gn~~le~vv~~L~~~g~~ 810 (1165)
T 2qf7_A 732 AGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERD 810 (1165)
T ss_dssp TCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCSBTSCCBHHHHHHHHTTSTTC
T ss_pred cCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEecccccCCCccchhHHHHHHHHHhcCCC
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHH
Q psy15244 923 CGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTN 1002 (1427)
Q Consensus 923 tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~sn 1002 (1427)
+++|+++|. ..+++|.+.+..|.||+ +.+.+.++++|.|++||||+||
T Consensus 811 tgidl~~L~-------------------------------~~s~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~pGG~~sn 858 (1165)
T 2qf7_A 811 PGLDPAWIR-------------------------------RISFYWEAVRNQYAAFE-SDLKGPASEVYLHEMPGGQFTN 858 (1165)
T ss_dssp CCCCHHHHH-------------------------------HHHHHHHHHHGGGGGGC-CCCCSCCTTHHHHCCCHHHHHH
T ss_pred ccccHHHHH-------------------------------HHHHHHHHHhhhccCCC-CCccCCccceEeccCCCccHHH
Confidence 999995555 44555566777888999 8899999999999999999999
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHHHHhccccC
Q psy15244 1003 LKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIG 1080 (1427)
Q Consensus 1003 l~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g 1080 (1427)
+++|++++|+ +|++|+++|++||+++|||++|||+||||||||+|||++|++++++.+++++++||+||++|++|+||
T Consensus 859 l~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~vtp~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 938 (1165)
T 2qf7_A 859 LKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLG 938 (1165)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTSCCCSTTHHHHHHHHHHHHHHHTCCHHHHHCTTSCCCCCHHHHHHHHTTTC
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHcCCCccCCChhHHHHHHHHHHHHcCCChhhhccccccccCCHHHHHHhCcCCC
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCCCchhcccccc
Q psy15244 1081 EPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALE 1160 (1427)
Q Consensus 1081 ~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~ 1160 (1427)
+||+|||++|++++|++++++++||+++ ++|.||+++ ++ ++.+++|
T Consensus 939 ~~~~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~~~~~~~~-----~~---~~~~~~~--------------- 984 (1165)
T 2qf7_A 939 QPPSGWPEALQKKALKGEKPYTVRPGSL-----------LKEADLDAE-----RK---VIEKKLE--------------- 984 (1165)
T ss_dssp CCTTCCCHHHHHHHHTTCCCCCSCGGGG-----------SCCCCHHHH-----HH---HHHHHHT---------------
T ss_pred CCCCCCCHHHHHHHhCCCCcCcCCcccc-----------CCcccHHHH-----HH---HHHHhhc---------------
Confidence 9999999999999999999999999999 999898888 87 6766666
Q ss_pred cccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeeccccc
Q psy15244 1161 RKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISE 1240 (1427)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~ 1240 (1427)
+..++|| +|+|+|||+++.+|++++++||+++.|||+.||+|+++|+++.+++++||++.++
T Consensus 985 -----~~~~~~~-------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~------ 1046 (1165)
T 2qf7_A 985 -----REVSDFE-------FASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIV------ 1046 (1165)
T ss_dssp -----SCCCHHH-------HHHHHHCHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEEEEEETTEEEEEE------
T ss_pred -----CCCCHHH-------HHHHHcCcHHHHHHHHHHHhcCCcccCCchhhhcCCCcCceeeecccCCccceeE------
Confidence 3468899 9999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccccceeccCCCCCcceeeeeecCCcceEEEeecccccc
Q psy15244 1241 HLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLN 1320 (1427)
Q Consensus 1241 ~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~ 1320 (1427)
+.++++++.
T Consensus 1047 -----------------------------------------------------------------------~~~~~~~~~ 1055 (1165)
T 2qf7_A 1047 -----------------------------------------------------------------------NQAVSATDS 1055 (1165)
T ss_dssp -----------------------------------------------------------------------EEEECCCCT
T ss_pred -----------------------------------------------------------------------ecccCCCcc
Confidence 444444444
Q ss_pred cCCceEEEEEECCEEeEe---chhhhh-hhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceee
Q psy15244 1321 DHGERTVFFLYNGQLRSL---DKNKAK-KLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETL 1396 (1427)
Q Consensus 1321 ~~g~r~v~~elnG~~~~v---d~~~~~-~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~ 1396 (1427)
.|.++++|++||+.+.| +..... .....+++++.++.+|.|||+|+|++|.|++||.|++||+|++||+||||++
T Consensus 1056 -~g~~~~~~evnG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~ 1134 (1165)
T 2qf7_A 1056 -QGMVTVFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETA 1134 (1165)
T ss_dssp -TSEEEEEEEETTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEE
T ss_pred -CCceEEEEEECCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcccceEE
Confidence 37778888888888777 332221 1223456677788999999999999999999999999999999999999999
Q ss_pred eecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1397 IHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1397 i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.||.+|+|+++.+++|+.|+.|++|++|+
T Consensus 1135 i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1135 IHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp EECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred EEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 999999999999999999999999999875
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-141 Score=1331.50 Aligned_cols=705 Identities=46% Similarity=0.826 Sum_probs=611.0
Q ss_pred CcccccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCcccccCccccccccccc
Q psy15244 488 DKKFLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLVNGPMTPLYVNVKPVNVDPVIDRTVSKFETSCADFVS 567 (1427)
Q Consensus 488 ~~~f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1427)
|..-.+| +|+|+|||+|||||++...+ ||++|||+||+|++|||+++......++....|.+|.+..
T Consensus 8 ~~~~~~g-~~~t~fi~~~p~l~~~~~~~-~~~~~~l~~~~~~~vn~~~~~~~~~~~~~~~~~~~p~~~~----------- 74 (718)
T 3bg3_A 8 HHHSSGL-VPRGSHMDENPELFQLRPAQ-NRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPI----------- 74 (718)
T ss_dssp ---------------------------C-HHHHHHHHHHHHHHHHCCSSCCCSSCCCCSSCCCCCCCCS-----------
T ss_pred cccccCC-CeeeeeccCCHHHhCCCccC-ChHHHHHHHHHHheecCCCccccCCCCCCCCCCCCCCCcc-----------
Confidence 3445678 99999999999999999887 9999999999999999997766543232222355654211
Q ss_pred ccccccccccCccccccccCCCCCchHHHHHhhCCCcchheeeccceeEeecccccccchhhhhcccccccccccccccc
Q psy15244 568 DMNERSKIRTDTDEKYLIKKPQANGYRKLLQVMGAGEFVTTVRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKVMMGAG 647 (1427)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 647 (1427)
.++|.||||+|+++|| +
T Consensus 75 -------------------~~~~~g~r~~l~~~gp--------------------------------------------~ 91 (718)
T 3bg3_A 75 -------------------GPPPAGFRDILLREGP--------------------------------------------E 91 (718)
T ss_dssp -------------------SCCCCCHHHHHHHHHH--------------------------------------------H
T ss_pred -------------------CCCCCCHHHHHHHhCH--------------------------------------------H
Confidence 1237899999999999 6
Q ss_pred ccccccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHH
Q psy15244 648 EFVNSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELR 727 (1427)
Q Consensus 648 ~~~~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr 727 (1427)
+|++||+++++|+|+|||||||+||++++||+++||++||+.|+++..|+++||+||||+||+|++|++++||++++.++
T Consensus 92 ~~~~~~~~~~~I~I~DTTLRDG~Qs~~~~r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~ 171 (718)
T 3bg3_A 92 GFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELR 171 (718)
T ss_dssp HHHHHHHHCCSCEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHhccCCeEEeecCCChhhCCCCCcCCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHH
Confidence 99999999999999999999999999989999999999999999966689999999999999999999999999999999
Q ss_pred HhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy15244 728 ELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAG 807 (1427)
Q Consensus 728 ~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~ 807 (1427)
+.+||+++|||+||+|++||++||+|+++.|+++|+++|+|+||||+++|++++++.+++++++.|. .+++++||++
T Consensus 172 ~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~---~v~~~i~~~~ 248 (718)
T 3bg3_A 172 ELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGG---VVEAAISYTG 248 (718)
T ss_dssp HHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTS---EEEEEEECCS
T ss_pred HHcccchHHHHhcccccccccccCCcchHHHHHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCC---eEEEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHH
Q psy15244 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVK 887 (1427)
Q Consensus 808 d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~ 887 (1427)
||.||.++.|+++||+++++++.++|||+|+||||+|+++|.+++++|++||+++|+++|++|||||+|||+||+++|++
T Consensus 249 d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAve 328 (718)
T 3bg3_A 249 DVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQ 328 (718)
T ss_dssp CTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHH
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHH
Q psy15244 888 AGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSY 967 (1427)
Q Consensus 888 AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~ 967 (1427)
|||++||+|++|||||+|||+||+|+++|+.+|+++++|+++|.++++++++
T Consensus 329 AGa~~VD~ti~GlGertGN~~lE~vv~~L~~~g~~tgidl~~L~~~s~~v~~---------------------------- 380 (718)
T 3bg3_A 329 AGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEG---------------------------- 380 (718)
T ss_dssp TTCSEEEEBCGGGCSTTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHH----------------------------
T ss_pred hCCCEEEecCcccccccCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999777766666555
Q ss_pred HHHhhhhcCCCC-CCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHH
Q psy15244 968 WRKVRELYAPFE-CTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADL 1044 (1427)
Q Consensus 968 ~~~~~~~Y~~f~-~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~ 1044 (1427)
.+..|.||+ .+.+.+.+.++|.|++||||+||+++|++++|+ +|++|+++|++||++|||+++|||+|||||||
T Consensus 381 ---~~~~~~~~~~~~~~~g~~~~v~~~e~pGg~~snl~~q~~~~G~~~~~~~v~~~~~~v~~~lG~~~~Vtp~Sq~vg~~ 457 (718)
T 3bg3_A 381 ---ARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDL 457 (718)
T ss_dssp ---HHHHTGGGCGGGTCCSCCTTHHHHCCCHHHHHHHHGGGTTTSCTTHHHHHHHHHHHHHHHTTSCCCCTTHHHHHHHH
T ss_pred ---HhCCCcCCcCCccccccccceeeccCcchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCccCCcHhHHHHHH
Confidence 444555554 256778899999999999999999999999999 69999999999999999999999999999999
Q ss_pred HHHHHHcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccc
Q psy15244 1045 AIFMTQEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFK 1124 (1427)
Q Consensus 1045 a~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d 1124 (1427)
|+|||++|++++++.++.+.++||+||++|++|+||+||+|||++|+++||++++++++||+++ ++|.|
T Consensus 458 A~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------l~~~d 526 (718)
T 3bg3_A 458 AQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGAS-----------LPPLD 526 (718)
T ss_dssp HHHHHHTTCCHHHHHHHTTTCCCCHHHHHHTTTSSCCCSSCCCHHHHHHHHSSSCCCCSCHHHH-----------SCCCC
T ss_pred HHHHHHcCCChHHhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCCCcccc-----------CCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99989
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
|+++ ++ ++.+++| .+.++|| +|+|+|||+++.+|++++++||+++
T Consensus 527 ~~~~-----~~---~~~~~~~--------------------~~~~~ed-------~l~~~~~p~~~~~~~~~~~~~g~~~ 571 (718)
T 3bg3_A 527 LQAL-----EK---ELVDRHG--------------------EEVTPED-------VLSAAMYPDVFAHFKDFTATFGPLD 571 (718)
T ss_dssp SSHH-----HH---HHHHHTC--------------------SCCCHHH-------HHHHHHCHHHHHHHHHHHHHSCCCT
T ss_pred HHHH-----HH---HHHHHhc--------------------cCCCHHH-------HHHHHhCchhHHHHHHHHHhcCCcc
Confidence 9888 88 6777776 3478899 9999999999999999999999999
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
.|||+.||+|+++|+++.+++++||++.++
T Consensus 572 ~l~~~~~~~~~~~~~~~~v~i~~Gk~~~i~-------------------------------------------------- 601 (718)
T 3bg3_A 572 SLNTRLFLQGPKIAEEFEVELERGKTLHIK-------------------------------------------------- 601 (718)
T ss_dssp TSCHHHHHHCCCBTCEEEEECTTSCEEEEE--------------------------------------------------
T ss_pred cCcchhhhcCCCcCceeeeecccCceeEEE--------------------------------------------------
Confidence 999999999999999999999999999988
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEe---chhhhhhhhccccCCCCCCCcee
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSL---DKNKAKKLKLRSKADSDTAGEIG 1361 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~v---d~~~~~~~~~~~~a~~~~~~~V~ 1361 (1427)
+.++++++. .|.++++|++||+.+.| +.........++++++.++.+|.
T Consensus 602 ---------------------------l~~i~~~~~-~g~~~~~vevnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~v~ 653 (718)
T 3bg3_A 602 ---------------------------ALAVSDLNR-AGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIG 653 (718)
T ss_dssp ---------------------------EEEEEEECT-TSEEEEEEESSSSEEEEEEECGGGTCC-----CCCCCSSSCEE
T ss_pred ---------------------------ecccCCccc-CCcEEEEEEECCEEEEEEEeccCccccccccccCCCCCCceEe
Confidence 222332222 25555555555555554 11111111113356666788999
Q ss_pred cCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1362 APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|||+|+|++|.|++||.|++||+|++||+||||++|+||.+|+|.++.+++|+.|+.|++|++|+
T Consensus 654 ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 654 APMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999874
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-98 Score=900.53 Aligned_cols=450 Identities=31% Similarity=0.532 Sum_probs=416.7
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
.+++|+|+|||||||+||+++++|+++||++|++.|++ +|+++||+|+|++|++++||++++||++++.+++.+|+++
T Consensus 4 ~~~~V~I~DtTLRDG~Qs~~~~~~~~~dkl~Ia~~L~~--~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~ 81 (464)
T 2nx9_A 4 AIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQ--IGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTP 81 (464)
T ss_dssp CCCCCEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHT--SCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSC
T ss_pred CCCCcEEEECCccccccCCCCcCCCHHHHHHHHHHHHH--cCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCe
Confidence 45789999999999999998889999999999999999 7999999999999999999999999999999999999999
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
+|||+||.|.+||++||+|+++.|+++|+++|+|+||||+++||++|++.+++++++.|. .+++++||+. +
T Consensus 82 l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~---~v~~~i~~~~---~--- 152 (464)
T 2nx9_A 82 LQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGA---HAQGTLCYTT---S--- 152 (464)
T ss_dssp EEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTC---EEEEEEECCC---C---
T ss_pred EEEEeccccccCcccccchhhHHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCC---EEEEEEEeee---C---
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999882 2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.+|+++|++++++++.++|||+|+||||+|+++|.+++++|++|++++ +++|++|||||+|+|+||+++|++|||++||
T Consensus 153 ~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD 231 (464)
T 2nx9_A 153 PVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRVD 231 (464)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 379999999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhh
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVREL 974 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~ 974 (1427)
+|++|||+|+||++||+|+++|+.+|+++++|+++|.++ +++|.+.+..
T Consensus 232 ~ti~g~gertGN~~lE~lv~~L~~~g~~tgidl~~L~~i-------------------------------s~~v~~~~~~ 280 (464)
T 2nx9_A 232 TAISSMSGTYGHPATESLVATLQGTGYDTGLDIAKLEQI-------------------------------AAYFRDVRKK 280 (464)
T ss_dssp EBCGGGCSTTSCCBHHHHHHHHTTSTTCCCCCHHHHHHH-------------------------------HHHHHHHHHH
T ss_pred EeccccCCCCcCHHHHHHHHHHHhcCCCcccCHHHHHHH-------------------------------HHHHHHHHhh
Confidence 999999999999999999999999999999999655544 5555556777
Q ss_pred cCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcC
Q psy15244 975 YAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052 (1427)
Q Consensus 975 Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~ 1052 (1427)
|.||+ +.+++.++++|.|++||||+||+.+|++++|+ +|++|+++|++||+++||||||||+||+||+||+|||.+|
T Consensus 281 ~~~~~-~~~~g~~~~v~~~~~pGg~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~~g~~A~~~vl~~ 359 (464)
T 2nx9_A 281 YHAFE-GMMKGSDARILVAQVPGGMLTNMESQLKQQNALDKLDLVLEEIPRVREELGFLPLVTPTSQIVGTQAVINVVLG 359 (464)
T ss_dssp TGGGC-CSCCSCCTHHHHHCCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHTTTCCSCTTHHHHHHHHHHHHHHTS
T ss_pred ccccc-CCCcCCcCCeEEecCCCchHhHHHHHHHHcCCHhHHHHHHHHHHHHHHHcCCCcccCchhHhhHHHHHHHHHcC
Confidence 99999 89999999999999999999999999999999 9999999999999999999999999999999999999887
Q ss_pred CChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHHhCCCCCcccCCCCCCCccccccccCCCccccccccChh
Q psy15244 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPK 1132 (1427)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~ 1132 (1427)
.+|+ +||+||++|++|+||+||+|||++|+++||++++++++||++. ++| ||+++
T Consensus 360 ~~~~---------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~~~-----------~~~-~~~~~---- 414 (464)
T 2nx9_A 360 ERYK---------TITKETSGVLKGEYGKTPAPVNTELQARVLAGAEAITCRPADL-----------IAA-EMPTL---- 414 (464)
T ss_dssp STTS---------SCCHHHHHHHTTTTCCCSSCCCHHHHHHHHTTCCCCCSCGGGS-----------SCC-CHHHH----
T ss_pred Cccc---------cCCHHHHHHhCCCCCCCCCCCCHHHHHHHhCCCCCCCCCcccc-----------CCc-CHHHH----
Confidence 6664 7999999999999999999999999999999999999999999 888 88887
Q ss_pred hHHHHHhHhhhcCCCCCCCchhcccccccccccCCccc---cccccCccchhhhhcCchhHHHHHHHhhccC
Q psy15244 1133 ATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMA---CDCRENEPVKMNELIFPKATKKFMKFRDEFG 1201 (1427)
Q Consensus 1133 ~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 1201 (1427)
++++.+.....| .++++ || +|+|+|||+++.+|++++++|-
T Consensus 415 -~~~~~~~~~~~~--------------------~~~~~~~~ed-------~l~~~~~p~~~~~~~~~~~~~~ 458 (464)
T 2nx9_A 415 -QDRVLQQAKEQH--------------------ITLAENAIDD-------VLTIALFDQVGWKFLANRHNLE 458 (464)
T ss_dssp -HHHHHHHHHHTT--------------------CCCCSSHHHH-------HHHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHhcccc--------------------cccccccHHH-------HHHHHcCcHHHHHHHHhhcccc
Confidence 774333322222 23566 88 9999999999999999999874
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-95 Score=887.03 Aligned_cols=444 Identities=29% Similarity=0.464 Sum_probs=409.6
Q ss_pred cccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC
Q psy15244 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN 732 (1427)
Q Consensus 653 ~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~ 732 (1427)
++++++|+|+|||||||+||+++++|+++||++|++.|++ +|+++||+|+|++|++++||++++||++++.+++.+|+
T Consensus 19 ~~~~~~V~I~DtTLRDG~Qs~~~~~~~tedKl~Ia~~L~~--~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~ 96 (539)
T 1rqb_A 19 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDA--AGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPN 96 (539)
T ss_dssp CCCSEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHH--TTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTT
T ss_pred CCCCCceEEEECCCCchhccCCCCCCCHHHHHHHHHHHHH--cCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCC
Confidence 4566789999999999999998889999999999999999 79999999999999999999999999999999999999
Q ss_pred CceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC
Q psy15244 733 IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP 812 (1427)
Q Consensus 733 ~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p 812 (1427)
+++|||+||.|.+||++||+|+++.|++++.++|+|+||||+++||++|++.+++++++.|. .+++++||+.
T Consensus 97 ~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~---~v~~~i~~~~----- 168 (539)
T 1rqb_A 97 SRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGK---HAQGTICYTI----- 168 (539)
T ss_dssp SCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTC---EEEEEEECCC-----
T ss_pred CEEEEEeccccccCcccCcccccHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHCCC---eEEEEEEeee-----
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999882
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCC
Q psy15244 813 NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGAD 891 (1427)
Q Consensus 813 ~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad 891 (1427)
.++|+++|++++++++.++|||+|+||||+|+++|.+++++|++|++++| +++|++|+|||+|+|+||+++|++|||+
T Consensus 169 -~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~ 247 (539)
T 1rqb_A 169 -SPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVD 247 (539)
T ss_dssp -STTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCS
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCC
Confidence 23799999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHh
Q psy15244 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKV 971 (1427)
Q Consensus 892 ~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~ 971 (1427)
+||+|++|||+|+||++||+|+++|+.+|+++++|+++|.++++++ .+.
T Consensus 248 ~VD~ti~g~GertGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v-------------------------------~~~ 296 (539)
T 1rqb_A 248 VVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHF-------------------------------KAI 296 (539)
T ss_dssp EEEEBCGGGCSTTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHH-------------------------------HHH
T ss_pred EEEEeccccCCCccChhHHHHHHHHHhcCCCchhhHHHHHHHHHHH-------------------------------HHH
Confidence 9999999999999999999999999999999999996666555554 445
Q ss_pred hhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHH
Q psy15244 972 RELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMT 1049 (1427)
Q Consensus 972 ~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v 1049 (1427)
+..|.||. +.+. .++++|.|++||||+||+.+|++++|+ +|++|+++|++||+++||||+|||+||+||+||+|||
T Consensus 297 ~~~~~~~~-~~~~-~~~~v~~he~pGG~~Snl~~q~~~~G~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~vg~~A~~~v 374 (539)
T 1rqb_A 297 RPKYKKFE-SKTL-VDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNV 374 (539)
T ss_dssp GGGGGGGC-CSCS-CCCTHHHHCCCHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHTTCCCCCTTHHHHHHHHHHHHH
T ss_pred hCCCcCCC-CCcc-CCCceEEecCCcchhhHHHHHHHHcCcHHHHHHHHHHHHHHHHHcCCCcccCchhhhHHHHHHHHH
Confidence 66677777 5555 678889999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HcCCChhhhhhccccccccHhHHHHhccccCCCCCCCCHhHHHHH---hCCCCCcccCCCCCCCccccccccCCCccccc
Q psy15244 1050 QEKLSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKV---LDSLKDHALERKAEFDPIMACDYREDEPFKMN 1126 (1427)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~~~~~~~~~~~~~~---l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~ 1126 (1427)
+.|. | .+||+||++|++|+||+||+|||++|+++| |++ +++++||+++ ++| ||+
T Consensus 375 ~~~~-~---------~~~~~~~~~~~~G~~G~~p~~~~~~~~~~~~~~l~~-~~~~~rp~~~-----------l~~-~~~ 431 (539)
T 1rqb_A 375 MMGE-Y---------KRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGK-KPITQRPADL-----------LPP-EWE 431 (539)
T ss_dssp HHCT-T---------SSCCHHHHHHHTTTTCCCSSCCCHHHHHHHHHHHCC-CCCCSCGGGG-----------CCC-CHH
T ss_pred hcCc-c---------ccCCHHHHHHhCcCCCCCCCCCCHHHHHHHHHHhCC-CCCCCCcccc-----------CCc-CHH
Confidence 9873 3 479999999999999999999999999999 998 8999999999 888 777
Q ss_pred cccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhh
Q psy15244 1127 KLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRD 1198 (1427)
Q Consensus 1127 ~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 1198 (1427)
++ ++++..+.++ + .++|| +|+|+|||+++.+|+++|+
T Consensus 432 ~~-----~~~~~~~~~~-~----------------------~~~ed-------~l~~~~~p~~~~~~~~~~~ 468 (539)
T 1rqb_A 432 KQ-----SKEAATLKGF-N----------------------GTDED-------VLTYALFPQVAPVFFEHRA 468 (539)
T ss_dssp HH-----HHHHTTSTTC-C----------------------SSHHH-------HHHHHHCTTTHHHHHHHGG
T ss_pred HH-----HHHHHHHhhh-c----------------------CCHHH-------HHHHHhCcHHHHHHHHhhh
Confidence 76 5510002211 1 47789 9999999999999999997
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-83 Score=796.19 Aligned_cols=450 Identities=31% Similarity=0.516 Sum_probs=397.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHc---------CCEEEEEecCCC--ccCccccccceEEEcCCCCCcccCCCCHHHH
Q psy15244 54 PKTMEKILIANRSEVAIRVARACNEM---------GIKSVGIYSEQD--KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEI 122 (1427)
Q Consensus 54 ~~~~kkVLIagrGeia~riiraa~el---------Gi~~vav~s~~d--~~s~~~~~aDe~~~i~~~~~~~~~yldi~~I 122 (1427)
.+||+||||+|||+||++++|+|+++ |+++|++|++.| ..+++.++||++++++ +....++|+|++.|
T Consensus 53 ~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~-~~~~~~syld~~~I 131 (587)
T 3jrx_A 53 DRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVP-GGPNNNNYANVELI 131 (587)
T ss_dssp CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECC-CSSGGGTTTCHHHH
T ss_pred CcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCEEEEeC-CCCccccccCHHHH
Confidence 47899999999999999999999987 899999999766 7899999999999998 55667899999999
Q ss_pred HHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc-----------
Q psy15244 123 ICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTT----------- 191 (1427)
Q Consensus 123 i~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~----------- 191 (1427)
+++|++.++|+|||||||++||+.++++|++.|++|+||++++++.++||..+|++|+++|||+|++..
T Consensus 132 l~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~ 211 (587)
T 3jrx_A 132 VDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDD 211 (587)
T ss_dssp HHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC----
T ss_pred HHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ----------------ccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEE
Q psy15244 192 ----------------EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLV 255 (1427)
Q Consensus 192 ----------------~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlV 255 (1427)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+||.++++.+.+++. ++.+||
T Consensus 212 ~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~----~~~vlV 287 (587)
T 3jrx_A 212 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIP----GSPIFL 287 (587)
T ss_dssp --CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHST----TCCEEE
T ss_pred cccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhcc----CCCEEE
Confidence 127899999999999999999999999999999999999999999998876532 578999
Q ss_pred EeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Q psy15244 256 EKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335 (1427)
Q Consensus 256 EeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd 335 (1427)
|+||++++|++|++++|++|+++++++|+|++|++++|.++.+|++.++++.+++|.+.+.++++++||+|++++||+++
T Consensus 288 EeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d 367 (587)
T 3jrx_A 288 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS 367 (587)
T ss_dssp EECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEC
T ss_pred EEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEe
Confidence 99999779999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcccc-----------------ccccC--cccceEEEEE
Q psy15244 336 KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELG-----------------LCQEK--ITPQGCAIQC 396 (1427)
Q Consensus 336 ~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~-----------------l~q~~--i~~~g~ai~~ 396 (1427)
++|++||||||||+|++|+++|+++|+|++++|+++++|++|++++ +.|++ +..+||||+|
T Consensus 368 ~dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~ 447 (587)
T 3jrx_A 368 QDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAA 447 (587)
T ss_dssp SSSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEE
T ss_pred CCCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccchhcccccccccccccccccccccccCCCCceEEEE
Confidence 8899999999999999999999999999999999999999997432 33333 6789999999
Q ss_pred EeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc-c
Q psy15244 397 HLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-V 475 (1427)
Q Consensus 397 ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G-v 475 (1427)
|||||||.++|.|++|+|+.+.+|++++||...+....| .|++|||||+||||+||.||++|+++|.+||++++|+| +
T Consensus 448 Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~-~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~ 526 (587)
T 3jrx_A 448 RITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATG-GLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDF 526 (587)
T ss_dssp EEEC----------CCCCEEEECSSCTTEEEEECCC-----------CCEEEEEEEESSHHHHHHHHHHHHHHHHHSSTT
T ss_pred eecccCccccCCCCCcEEEEEEeCCCCceEEeccccccC-CcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEEeCCC
Confidence 999999999999999999999999999998654444444 59999999999999999999999999999999999999 8
Q ss_pred ccCHHHHHhhcCCcccccCCccccccccCc-chhhh
Q psy15244 476 TTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLE 510 (1427)
Q Consensus 476 ~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~ 510 (1427)
+||++||++||.||+|++| +++|+||+++ .+++.
T Consensus 527 ~tn~~~~~~~~~~~~f~~g-~~~t~~~~~~~~~~~~ 561 (587)
T 3jrx_A 527 RTTVEYLINLLETESFQNN-DIDTGWLDYLIAEKVQ 561 (587)
T ss_dssp SSTTHHHHHHHTSHHHHTT-CSCCGGGGC-------
T ss_pred CCcHHHHHHHhCChhhccC-CcchhHHhHhhhhhcc
Confidence 9999999999999999999 9999999987 45554
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-81 Score=780.88 Aligned_cols=445 Identities=31% Similarity=0.520 Sum_probs=372.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHc---------CCEEEEEecCCC--ccCccccccceEEEcCCCCCcccCCCCHHHH
Q psy15244 54 PKTMEKILIANRSEVAIRVARACNEM---------GIKSVGIYSEQD--KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEI 122 (1427)
Q Consensus 54 ~~~~kkVLIagrGeia~riiraa~el---------Gi~~vav~s~~d--~~s~~~~~aDe~~~i~~~~~~~~~yldi~~I 122 (1427)
.+||+||||+|||+||++++|+|+++ |+++|++|++.| ..+++.++||++++++ +....++|+|++.|
T Consensus 37 ~~~~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i~-~~~~~~sy~d~~~i 115 (540)
T 3glk_A 37 DRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVP-GGPNNNNYANVELI 115 (540)
T ss_dssp SCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECC-CSSGGGTTTCHHHH
T ss_pred cccccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEeC-CCCcccccccHHHH
Confidence 47899999999999999999999987 899999999766 7799999999999998 55667899999999
Q ss_pred HHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc-----------
Q psy15244 123 ICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTT----------- 191 (1427)
Q Consensus 123 i~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~----------- 191 (1427)
+++|++.++|+|||||||++|++.++++|++.|++|+||++++++.++||..+|++|+++|||+|++..
T Consensus 116 i~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~ 195 (540)
T 3glk_A 116 VDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDD 195 (540)
T ss_dssp HHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTT
T ss_pred HHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ----------------ccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEE
Q psy15244 192 ----------------EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLV 255 (1427)
Q Consensus 192 ----------------~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlV 255 (1427)
..+.+.+++.++++++|||+||||+.|+||+||++|++.+||.++++.+.+++ .++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~----~~~~vlV 271 (540)
T 3glk_A 196 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPIFL 271 (540)
T ss_dssp C----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHS----TTCCEEE
T ss_pred cccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhc----cCCCEEE
Confidence 12788999999999999999999999999999999999999999999887653 2578999
Q ss_pred EeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Q psy15244 256 EKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD 335 (1427)
Q Consensus 256 EeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd 335 (1427)
|+||++++|++|++++|++|+++++++|+|++|++++|.++.+|++.++++.+++|.+.+.++++++||+|++++||+++
T Consensus 272 Ee~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d 351 (540)
T 3glk_A 272 MKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYS 351 (540)
T ss_dssp EECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred EEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEc
Confidence 99999779999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcccc-----------------ccccC--cccceEEEEE
Q psy15244 336 KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELG-----------------LCQEK--ITPQGCAIQC 396 (1427)
Q Consensus 336 ~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~-----------------l~q~~--i~~~g~ai~~ 396 (1427)
++|++||||||||+|++|++++++||+|++++|+++++|++|++++ +.|.. +..+||||+|
T Consensus 352 ~dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~aie~ 431 (540)
T 3glk_A 352 QDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAA 431 (540)
T ss_dssp TTSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSCCSCCCSCCC----CCCSEEEEE
T ss_pred CCCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCcccccccccccccccccccccccccccccCCCceeEEEE
Confidence 8899999999999999999999999999999999999999997432 22332 6689999999
Q ss_pred EeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcc-c
Q psy15244 397 HLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSG-V 475 (1427)
Q Consensus 397 ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~G-v 475 (1427)
|||||||.++|.|++|+|+.+.+|+++++|...+....| .|+++||||+||||+||+||++|++||.+||++++|+| +
T Consensus 432 ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~-~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~ 510 (540)
T 3glk_A 432 RITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATG-GLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDF 510 (540)
T ss_dssp EEC------------CCEEECCCSSCCSEEEEEEC-------------CEEEEEEEESSHHHHHHHHHHHHHHHTCC---
T ss_pred EEeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCC-CCCCccCcccceEEEEcCCHHHHHHHHHHHHhccEEeccc
Confidence 999999999999999999999999999998754444444 58999999999999999999999999999999999999 8
Q ss_pred ccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 476 TTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 476 ~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+||++||++||.||+|++| +++|+||+++
T Consensus 511 ~tn~~~~~~~~~~~~f~~~-~~~t~~~~~~ 539 (540)
T 3glk_A 511 RTTVEYLINLLETESFQNN-DIDTGWLDYL 539 (540)
T ss_dssp -HHHHHHHHHHHSHHHHHT-CC--------
T ss_pred CCcHHHHHHHhCChhhcCC-Cccchhhhhc
Confidence 9999999999999999999 9999999864
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-81 Score=795.36 Aligned_cols=452 Identities=41% Similarity=0.730 Sum_probs=366.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
||+||||+|||++|++++++|+++|++++++|++.|..++|.++||++++++ +....++|+|++.|+++|+++++|+||
T Consensus 1 m~~kiLIanrGeia~riiraar~lGi~~vav~sd~d~~a~~~~~aD~~~~i~-p~~~~~syld~~~i~~~a~~~~~daI~ 79 (681)
T 3n6r_A 1 MFNKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIG-PPPANQSYIVIDKVMAAIRATGAQAVH 79 (681)
T ss_dssp -CCCBCBSCCHHHHHHHHHHHGGGSCCBCCEECSTTSSCHHHHHSSCCEECS-SSSGGGTTSCHHHHHHHHHHTCCSCCB
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEEcCCCCCChhHHhCCEEEEcC-CCCcccCccCHHHHHHHHHHhCcCEEE
Confidence 6899999999999999999999999999999999999999999999999998 556678999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|||||++|++.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++...+.+.+++.++++++|||+||||
T Consensus 80 pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igyPvVvKp 159 (681)
T 3n6r_A 80 PGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKA 159 (681)
T ss_dssp CCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC--------------------------
T ss_pred ECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999864568899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
..|+||+||++|++.+||.++++.+.+++...|+++.+++|+||++++|++|++++|++|+++++++|+|+++++|++.+
T Consensus 160 ~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~ 239 (681)
T 3n6r_A 160 SAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVV 239 (681)
T ss_dssp -------------------------------------------CCSCEEEEEEEECCSSSCCEEEEEEECCCEETTEECE
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEeeeecceeccCccEE
Confidence 99999999999999999999999999998889999999999999977999999999999999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++.+++|.+.+.++++++||+|++|+||+++++|++||||||||+|++|+++|+++|+|++++++++++|+
T Consensus 240 e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~dg~~~~lEiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~ 319 (681)
T 3n6r_A 240 EEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGE 319 (681)
T ss_dssp EEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTSCCCCCEEECSCCTTHHHHHHHHTCCHHHHHHHHHTSC
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeCCCCEEEEecccccCCCcHHhHHHhCCCHHHHHHHHHCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCC-C-------------------CcccccCCCcCCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPA-S-------------------IGIRVDSSCPYPG 435 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~-~-------------------~gvr~d~~~~~~G 435 (1427)
+++ +.|+++..+||+++||+|+|||.++|.|++|+|..+++|. + +|||+|+ .+++|
T Consensus 320 ~l~---~~~~~~~~~g~ai~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~~~~~~~vr~d~-~~~~g 395 (681)
T 3n6r_A 320 PLS---ITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDT-GVYEG 395 (681)
T ss_dssp CCS---SCTTTCCCCSEEEEEEEESEEGGGTTEECCEECSCEECCCC--------------------CCEEEEE-SCCTT
T ss_pred CCC---CCccccceeEEEEEEEEecCCcccccCCCCcEEEEEECCCCCcccccccccccccccccCCCcEEEEc-cccCC
Confidence 875 5688889999999999999999999999999999999987 4 4899995 47899
Q ss_pred ceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc-chhhhcCC
Q psy15244 436 LQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN-PQLLERNS 513 (1427)
Q Consensus 436 ~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~-~~l~~~~~ 513 (1427)
+.|+++||||+||||+||+||++|+++|.+||++++|+|++||++||+++|.||+|++| +++|+||+++ +++|....
T Consensus 396 ~~v~~~yd~~iak~i~~g~~r~~a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~ 473 (681)
T 3n6r_A 396 GEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISG-DMTTAFIAEEYPEGFEGVN 473 (681)
T ss_dssp CEECTTSCCEEEEEEEEESSHHHHHHHHHHHHHHCEECSSCCSHHHHHHHHHCHHHHHC-CCCSSHHHHHCTTSCCCCC
T ss_pred CccCCCCCCceeEEEEEcCCHHHHHHHHHHHHhcCEEECccCCHHHHHHHhCCHhhccC-CcccchhhhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999998 78887643
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-76 Score=722.75 Aligned_cols=445 Identities=41% Similarity=0.740 Sum_probs=424.9
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCC
Q psy15244 53 PPKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVD 132 (1427)
Q Consensus 53 ~~~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vD 132 (1427)
|.+||+||||+|+|+++++++++|+++|+++++++++++..+++.++||+.++++ +....++|+|.+.|+++|+++++|
T Consensus 2 n~m~~~kiLI~g~g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~-~~~~~~~~~d~~~l~~~~~~~~~d 80 (446)
T 3ouz_A 2 NAMEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIG-KARSSESYLNIPAIIAAAEIAEAD 80 (446)
T ss_dssp CTTCCCEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEE-CCTTTTGGGCHHHHHHHHHHHTCS
T ss_pred CccccceEEEECCCHHHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcC-CCCccccccCHHHHHHHHHHhCcC
Confidence 4467999999999999999999999999999999999998899999999999987 455667899999999999999999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEE
Q psy15244 133 AIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVI 212 (1427)
Q Consensus 133 aI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvV 212 (1427)
+|||+|||++|+..+++.|++.|++++||++++++.++||..+|++|+++|||+|++....+.+.+++.++++++|||+|
T Consensus 81 ~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~Pvv 160 (446)
T 3ouz_A 81 AIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVI 160 (446)
T ss_dssp EEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSEE
T ss_pred EEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999863357999999999999999999
Q ss_pred EeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccc
Q psy15244 213 LKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQ 292 (1427)
Q Consensus 213 VKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~q 292 (1427)
|||..|+||+||++|++.+||.++++.+.+++...|+++.+++|+||++++|+++++++|++|+++++++++|+++++++
T Consensus 161 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~ 240 (446)
T 3ouz_A 161 LKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQ 240 (446)
T ss_dssp EEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTE
T ss_pred EEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeceeeeeecCc
Confidence 99999999999999999999999999999998888999999999999977999999999999999999999999999999
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
+.++.+|++.++++.++++.+.+.++++++||+|++|+||+++++|++||||||||++++|+++++++|+|+++++++++
T Consensus 241 ~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~~iEiNpR~~g~~~~~~~~~G~dl~~~~~~~~ 320 (446)
T 3ouz_A 241 KLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVA 320 (446)
T ss_dssp EEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCTTHHHHHHHHCCCHHHHHHHHH
T ss_pred eEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCEEEEEeECCCCCcceeeeeeeCCCHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEE
Q psy15244 373 QGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVH 452 (1427)
Q Consensus 373 ~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~ 452 (1427)
+|++++ .+.++..+||+++||+++|+| ..|.|++|++..+++|+++++|++ ..+++|+.|+++|||++|+|+++
T Consensus 321 ~G~~l~----~~~~~~~~g~ai~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr~~-~~~~~G~~v~~~~d~~~~~vi~~ 394 (446)
T 3ouz_A 321 EGYALP----SQESIKLNGHSIECRITAEDS-KTFLPSPGKITKYIPPAGRNVRME-SHCYQDYSVPAYYDSMIGKLVVW 394 (446)
T ss_dssp TTCCCC----CGGGCCCCSEEEEEEEESBCT-TTCCBCCEECSEEECCCSTTEEEE-ECCCTTCEECTTTCCEEEEEEEE
T ss_pred CCCCCC----cCCCCCcceEEEEEEeeccCC-CccCCCCcEEeEEecCCCCCEEEE-cccccCCEeCCccCCcceEEEEE
Confidence 999885 356678899999999999999 899999999999999999999999 45789999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 453 TATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 453 G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
|+|+++|++++.++|++++|+|++||++||+++|.||+|++| +++|+||++|
T Consensus 395 g~~~~~a~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 446 (446)
T 3ouz_A 395 AEDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINN-NYDTNYLARH 446 (446)
T ss_dssp ESSHHHHHHHHHHHHHHCEEESSCCTHHHHHHHHTCHHHHTT-CCCTTHHHHC
T ss_pred cCCHHHHHHHHHHHHhhCEEeCccCCHHHHHHHhCChhhccC-CccccccccC
Confidence 999999999999999999999999999999999999999999 9999999864
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-72 Score=742.71 Aligned_cols=445 Identities=39% Similarity=0.686 Sum_probs=355.9
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCC
Q psy15244 52 PPPKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNV 131 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~v 131 (1427)
+.++||+||||+|||++|++++++|+++|++++++++++|..+++.++||++++++ +....++|+|.+.|+++|+++++
T Consensus 26 ~~~~m~kkILI~grGeia~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~-p~~~~~syld~~~Il~~a~~~~i 104 (1236)
T 3va7_A 26 QKKKPFETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALH-GRTAAETYLDIDKIINAAKKTGA 104 (1236)
T ss_dssp --CCSCSEEEECCCHHHHHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECC-CSSTTTTTTCHHHHHHHHHHTTC
T ss_pred CccCCCCEEEEEcCCHHHHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeC-CCcccccccCHHHHHHHHHHhCC
Confidence 44578999999999999999999999999999999999999999999999999997 44566889999999999999999
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE
Q psy15244 132 DAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV 211 (1427)
Q Consensus 132 DaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv 211 (1427)
|+|||||||++|+..+++.|++.|++|+||++++++.++||..+|++|+++|||+||++ ..+.+.+++.++++++|||+
T Consensus 105 DaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~-~~v~s~eea~~~a~~iGyPv 183 (1236)
T 3va7_A 105 QAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPV 183 (1236)
T ss_dssp SEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC-----------------------
T ss_pred CEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCee-EecCCHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999975 46889999999999999999
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccccccc
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY 291 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~ 291 (1427)
||||..|+||+||++|++.+||.++++.+.+++...|++..++|||||++++|++|++++|++|++++++++||++++++
T Consensus 184 VVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~ 263 (1236)
T 3va7_A 184 MVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRN 263 (1236)
T ss_dssp -------------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEEETT
T ss_pred EEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecCCceEEEEeeeeeeeeecC
Confidence 99999999999999999999999999999888888888999999999997799999999999999999999999999999
Q ss_pred ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCC-CcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHH
Q psy15244 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKD-DNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 292 qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~d-G~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~ 370 (1427)
+++++.+|++.++++.+++|.+.+.++++++||+|++++||+++++ |++||||||||+|++|+++++++|+|+++++++
T Consensus 264 ~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~g~~~~te~vtGvDlv~~~l~ 343 (1236)
T 3va7_A 264 QKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLR 343 (1236)
T ss_dssp EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHH
T ss_pred cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCCCccHHHHHHHCCCHHHHHHH
Confidence 9999999998899999999999999999999999999999999974 889999999999999999999999999999999
Q ss_pred HHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEE
Q psy15244 371 IAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKII 450 (1427)
Q Consensus 371 iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi 450 (1427)
+++|++++ +.+..+..+|||++||+|+|||.++|.|++|++..+..|.+ +|++ .+++.|+.|+++|||++|+|+
T Consensus 344 ~a~G~~l~---~~~~~~~~~g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g--vrvd-~~v~~G~~V~~~yds~la~vi 417 (1236)
T 3va7_A 344 IAANDSPD---FDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFPSW--ARVD-TWVKKGTNVSAEYDPTLAKII 417 (1236)
T ss_dssp HHTTCCCC---GGGCCCCCCSEEEEEEEESEETTTTTEECCEECCEEECCTT--SEEE-ECCCTTCEECSSSCCEEEEEE
T ss_pred HHCCCCCC---CccccccccceEEEEEEecCCcccccCCCCceEEEEEcCCc--cEec-ccccCCCEeCCCCCCceEEEE
Confidence 99999874 45666778999999999999999999999999999998865 8888 457899999999999999999
Q ss_pred EEcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 451 VHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 451 ~~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
++|+|+++|+++|+++|++++|+|++|||+||+++|.||+|++| +++|+||+++
T Consensus 418 ~~g~~r~eA~~~~~~al~~~~i~G~~tn~~~~~~~~~~~~f~~~-~~~t~~~~~~ 471 (1236)
T 3va7_A 418 VHGKDRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEA-KVATKVLDSF 471 (1236)
T ss_dssp EEESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHHCHHHHHT-CCCTTGGGGC
T ss_pred EEeCCHHHHHHHHHHHhhCEEEeCcccCHHHHHHHhCCHHHhCC-CCcchhhhhc
Confidence 99999999999999999999999999999999999999999999 9999999986
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-68 Score=655.87 Aligned_cols=454 Identities=53% Similarity=0.880 Sum_probs=423.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+||+||||+|+|+++++++++|+++|+++++++++++..+++.+++|+.+.++.+..+..+|.|.+.|+++|+++++|+|
T Consensus 4 ~~~k~ILI~g~g~~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v 83 (461)
T 2dzd_A 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAI 83 (461)
T ss_dssp CCCSEEEECSCHHHHHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEE
T ss_pred CcCcEEEEECCcHHHHHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999999999999998888788999999999987544566789999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
+|++|+++|++.+++.|++.|++++||++++++.++||..+|++|+++|||+|++....+.+.+++.++++++|||+|||
T Consensus 84 ~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvK 163 (461)
T 2dzd_A 84 HPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIK 163 (461)
T ss_dssp ECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSCEEEE
T ss_pred EECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999985225789999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|..|+||+||++|++.+|+.++++.+.+++...|++..+++|+||++++|+++++++|++|+++++++++|+.++++++.
T Consensus 164 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~ 243 (461)
T 2dzd_A 164 AALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKV 243 (461)
T ss_dssp ESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEECTTCCEEEEEEEEEEEEETTEEE
T ss_pred eCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEEcCCCCEEEEEeccccccccccce
Confidence 99999999999999999999999998887777788899999999997799999999998899999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
.+.+|++.++++.++++.+.+.++++++||.|.+++||++++ |++||||||||+|++++++++++|+|++++++++++|
T Consensus 244 ~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G 322 (461)
T 2dzd_A 244 VEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADG 322 (461)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-TEEEEEEEESSCCGGGHHHHHHHCCCHHHHHHHHHTT
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCEEEEEEECCCCCceeeEEeecCCCHHHHHHHHHcC
Confidence 999999889999999999999999999999999999999998 7799999999999999999999999999999999999
Q ss_pred CCCcccc--c-cccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEE
Q psy15244 375 KSLTELG--L-CQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 375 ~~l~~l~--l-~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
+++++.. + .+..+..+|+++++|+++++|..+|.|..|.+..++.|+++++|++......|+.|+++|||++++|++
T Consensus 323 ~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~~G~~i~~~~~~~~~~v~~ 402 (461)
T 2dzd_A 323 CSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLST 402 (461)
T ss_dssp CCTTSTTTCCCCGGGCCCCSEEEEEEEESEEGGGTTEECCEECSEEECCCCTTEEEEESSCSTTCEECSSSCCEEEEEEE
T ss_pred CCccccccccccccccccceeEEEeeecccCCccCccCCCCeeeEEecCCCCCeEeecccccCCCCcCcccchhhheeEE
Confidence 9987542 2 233467789999999999999888999999999999998899999855568999999999999999999
Q ss_pred EcCCHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhh
Q psy15244 452 HTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~ 510 (1427)
+|+|+++|++++++++++++|+|++|||+|+.+++.||+|++| +++|+||+++++||.
T Consensus 403 ~g~~~~~a~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 460 (461)
T 2dzd_A 403 WALTFEQAARKMLRNLREFRIRGIKTNIPFLENVVQHPKFLSG-EYDTSFIDTTPELFV 460 (461)
T ss_dssp EESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHHSHHHHTS-CCCTTHHHHCGGGGC
T ss_pred EcCCHHHHHHHHHHHHHhcEEeCCcCCHHHHHHHhCChhhhCC-Cccchhhhcchhhhc
Confidence 9999999999999999999999999999999999999999999 999999999988875
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-66 Score=636.90 Aligned_cols=450 Identities=44% Similarity=0.816 Sum_probs=417.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+|+|+++++++++|+++|+++++++++++..+++.+++|+.+.++ +. ...+|.|.+.|+++|+++++|+|+
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~-p~-~~~~~~d~~~l~~~~~~~~~d~v~ 78 (451)
T 1ulz_A 1 MVNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIG-TD-PLDTYLNKQRIINLALEVGADAIH 78 (451)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECC-SS-TTHHHHCHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcC-CC-cccccCCHHHHHHHHHHcCCCEEE
Confidence 5889999999999999999999999999999988887788899999999886 22 456788999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|++|+++|++.+++.|++.|++++||++++++.++||..+|++|+++|||+|++....+.+.+++.++++++|||+||||
T Consensus 79 ~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp 158 (451)
T 1ulz_A 79 PGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKA 158 (451)
T ss_dssp CCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEE
T ss_pred ECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999852257899999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEE
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~i 295 (1427)
..|+||+||++|++.+|+.++++.+..++...|++..+++|+||++++|++++++++++|+++++.+|+|+.++++++..
T Consensus 159 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~ 238 (451)
T 1ulz_A 159 TAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLV 238 (451)
T ss_dssp CSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEE
T ss_pred CCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCCCCEEEEeeeecccccccccce
Confidence 99999999999999999999999988877778888899999999977999999999988999999999999999999999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 296 e~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
+.+|++.++++..+++.+.+.++++++||.|++++||+++++|++||||||||+++++++++.++|+|++++++++++|.
T Consensus 239 ~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~ 318 (451)
T 1ulz_A 239 EIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGE 318 (451)
T ss_dssp EEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred eECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeCCCCEEEEEeeCCCCccchHHHHHhCCCHHHHHHHHHcCC
Confidence 99999779999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.+..+...++++++|+++++|...|.|..|++..+..|.+++++++ .+.+.|..+.+++|+++|+|+++|+|
T Consensus 319 ~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~-~~~~~g~~~~~~~~~~~g~v~~~g~~ 394 (451)
T 1ulz_A 319 PLT---IKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVE-HAAARGFEVTPYYDSMIAKLITWAPT 394 (451)
T ss_dssp CCC---CCGGGCCCCSEEEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEE-ECCCTTCBCCSSSCCEEEEEEEEESS
T ss_pred CCC---CccccCCCceEEEEEeccccCcccCcCCCCceeceEECCCCCCcccc-cCccCCCEecccccchheEEEEECCC
Confidence 875 23444566789999999999998889999999998888887888877 44689999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcC
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERN 512 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~ 512 (1427)
+++|++++++++++++++|++|||+||+++|.||+|++| +++|+||++++++|++.
T Consensus 395 ~~ea~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 450 (451)
T 1ulz_A 395 WDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAG-KFTTKYLEEHPEVFEYE 450 (451)
T ss_dssp HHHHHHHHHHHHHTCEECSSCCSHHHHHHHHHCHHHHHT-CCCTTTTTTCGGGGCCC
T ss_pred HHHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhcC-CCcchhhhhhHhhcccC
Confidence 999999999999999999999999999999999999999 99999999998888763
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-66 Score=631.22 Aligned_cols=443 Identities=42% Similarity=0.784 Sum_probs=412.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
|+||||+|+|+++++++++|+++|+++++++++.+..+++.+++|+.+.++ +.....+|.|.+.|+++|+++++|+|+|
T Consensus 1 ~k~ilI~g~g~~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~-~~~~~~~~~d~~~l~~~~~~~~~d~v~~ 79 (451)
T 2vpq_A 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVG-PTLSKDSYLNIPNILSIATSTGCDGVHP 79 (451)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEE-CSSGGGTTTCHHHHHHHHHHTTCSEEEC
T ss_pred CceEEEeCCCHHHHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcC-CCCccccccCHHHHHHHHHHcCCCEEEE
Confidence 579999999999999999999999999999988887788889999999986 4445578999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
++|+++|++.+++.+++.|++++||++++++.++||..+|++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus 80 ~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~ 159 (451)
T 2vpq_A 80 GYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKAT 159 (451)
T ss_dssp CSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEET
T ss_pred CCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCCcEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997523578999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
.|+||+||++|++.+|+.++++.+.+++...|++..+++|+||++++|++++++++++|+++++.+++|+.+++|++..+
T Consensus 160 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~ 239 (451)
T 2vpq_A 160 AGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVE 239 (451)
T ss_dssp TCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEE
T ss_pred CCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCCCCEEEEeccccchhccccceEE
Confidence 99999999999999999999999887777778889999999999769999999999889999999999999999999999
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEc-CCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd-~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
.+|++.++++.++++.+.+.++++++||.|++++||+++ ++|++||||||||+++++++++.++|+|++++++++++|.
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~ 319 (451)
T 2vpq_A 240 EAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGD 319 (451)
T ss_dssp EESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCCceehhhHHhCCCHHHHHHHHHCCC
Confidence 999977999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTAT 455 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~ 455 (1427)
+++ +.+.++..+++++.||+++++|...|.|.+|++..+..|.+++++++ .+.+.|..+++.+++++|+|+++|+|
T Consensus 320 ~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~-~~~~~g~~~~~~~~~~~g~v~~~g~~ 395 (451)
T 2vpq_A 320 VLP---YKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIE-SACYTNYTIPPYYDSMVAKLIIHEPT 395 (451)
T ss_dssp CCS---CCGGGCCCCSEEEEEEEESEEGGGTTEECCSBCSEEECCCSTTEEEE-CCCCTTCBCCTTTCCEEEEEEEEESS
T ss_pred CCC---CcccccCcCceEeeeEeeeeccccccCCCCCEEeEEECCCCCCcccc-cccccCCccCcccccccEEEEEEeCC
Confidence 875 23445667899999999999998889999999998888877888887 45688999999999999999999999
Q ss_pred HHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 456 YKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 456 ~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
+++|++++++++++++|+|++||++||+++|.||+|++| +++|+||+++
T Consensus 396 ~~ea~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 444 (451)
T 2vpq_A 396 RDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSG-KFNTNFLEQN 444 (451)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCSHHHHHHHHTCHHHHHT-CCCTTTTTTS
T ss_pred HHHHHHHHHHHHhccEEeCcCCCHHHHHHHhCCHhhhcC-CCccHHHhhh
Confidence 999999999999999999999999999999999999999 9999999987
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-66 Score=650.94 Aligned_cols=443 Identities=32% Similarity=0.522 Sum_probs=402.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHc---------CCEEEEEecCCC--ccCccccccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEM---------GIKSVGIYSEQD--KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~el---------Gi~~vav~s~~d--~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
+|++||||+|+|+++++++++|+++ |++++++++..| ..+++.++||+.+.++ +....++|+|.+.|+
T Consensus 45 ~~~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~~~~~~aD~~~~ip-~~~~~~~y~d~~~l~ 123 (554)
T 1w96_A 45 TVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVP-GGTNNNNYANVDLIV 123 (554)
T ss_dssp BCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECC-CSSGGGTTTCHHHHH
T ss_pred ccccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEEEEecccccccCChhhhhCCEEEEcC-CCCccccccCHHHHH
Confidence 6799999999999999999999998 667788887443 6678899999999997 445567899999999
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCC--CceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccc---------
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAG--LEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTE--------- 192 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~G--i~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~--------- 192 (1427)
++|+++++|+|+|++||++|++.++..|++.| ++++||++++++.++||..++++|+++|||+|++...
T Consensus 124 ~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~ 203 (554)
T 1w96_A 124 DIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDE 203 (554)
T ss_dssp HHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECT
T ss_pred HHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccc
Confidence 99999999999999999999999999999999 9999999999999999999999999999999998631
Q ss_pred ---------------cCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEe
Q psy15244 193 ---------------PVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEK 257 (1427)
Q Consensus 193 ---------------~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEe 257 (1427)
.+.+.+++.++++++|||+||||..|+||+||++|++.+||.++++.+.+++ .+..++||+
T Consensus 204 ~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~----~~~~vlvEe 279 (554)
T 1w96_A 204 KTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEI----PGSPIFIMK 279 (554)
T ss_dssp TTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHS----TTCCEEEEE
T ss_pred cccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhc----cCCCEEEEE
Confidence 1478899999999999999999999999999999999999999998877653 257899999
Q ss_pred eccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEc-C
Q psy15244 258 YIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-K 336 (1427)
Q Consensus 258 yIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd-~ 336 (1427)
||++++|++|++++|++|+++++++++|+.++++++.++.+|++.++++.++++.+.+.++++++||.|++++||+++ +
T Consensus 280 ~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~ 359 (554)
T 1w96_A 280 LAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHD 359 (554)
T ss_dssp CCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTT
T ss_pred ecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeeeCCCcCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC
Confidence 999889999999999889999999999999999999999999977899999999999999999999999999999998 6
Q ss_pred CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcccc-----------------cc---------ccCcccc
Q psy15244 337 DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELG-----------------LC---------QEKITPQ 390 (1427)
Q Consensus 337 dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~-----------------l~---------q~~i~~~ 390 (1427)
+|++||||||||+|++|+++++++|+|++++++++++|.+++.++ +. |..+...
T Consensus 360 dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 439 (554)
T 1w96_A 360 DGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPK 439 (554)
T ss_dssp TCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHHHHHCCCCCCC
T ss_pred CCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCcccccchhhhccCCccccccccccccccccccccccCCCC
Confidence 888999999999999999999999999999999999999886431 21 2245678
Q ss_pred eEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhcc
Q psy15244 391 GCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEET 470 (1427)
Q Consensus 391 g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~ 470 (1427)
||+++||+++++|.++|.|.+|++..+..|..++++++ .....|+.|+++|||++|+|+++|+|+++|++++.++++++
T Consensus 440 g~~i~~r~~~~~~~~~~~p~~G~i~~~~~~~~~~v~~~-~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i 518 (554)
T 1w96_A 440 GHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGY-FSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKEL 518 (554)
T ss_dssp SEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSEEEE-EEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEccCCCCCcccCCeEEeEEecCCCCCEEEe-eecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999888877888775 34578999999999999999999999999999999999999
Q ss_pred EEcc-cccCHHHHHhhcCCcccccCCccccccccC
Q psy15244 471 QVSG-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504 (1427)
Q Consensus 471 ~I~G-v~tni~~l~~~l~~~~f~~g~~~~t~~i~~ 504 (1427)
+|+| ++|||+||++||+||+|++| +++|+||++
T Consensus 519 ~i~g~~~~~i~~~~~~~~~~~f~~~-~~~t~~~~~ 552 (554)
T 1w96_A 519 SIRGDFRTTVEYLIKLLETEDFEDN-TITTGWLDD 552 (554)
T ss_dssp TTCC----CCHHHHHHHTSHHHHTT-CCCTTHHHH
T ss_pred EEEeeccCCHHHHHHHhcCHhhhcC-CccchHhhh
Confidence 9999 99999999999999999999 999999975
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=618.95 Aligned_cols=442 Identities=40% Similarity=0.747 Sum_probs=409.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
||+||||+|+|+++++++++|+++|+++++++++.+..+++.+++|+.+.++ +.....+|.|.+.|+++|+++++|+|+
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~-p~~~~~~~~d~~~l~~~~~~~~~d~v~ 79 (449)
T 2w70_A 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIG-PAPSVKSYLNIPAIISAAEITGAVAIH 79 (449)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEE-CSSGGGTTTCHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEeCCcHHHHHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcC-CCCccccccCHHHHHHHHHHcCCCEEE
Confidence 6899999999999999999999999999999988887788899999999875 344556899999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHH-HHHHHhcCCcEEEe
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKV-KEFCDEVEFPVILK 214 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea-~~~a~~iGyPvVVK 214 (1427)
|++|+++|++.+++.|++.|++++||++++++.++||..+|++|+++|||+|++....+.+.+++ .++++++|||+|||
T Consensus 80 ~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~PvvvK 159 (449)
T 2w70_A 80 PGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159 (449)
T ss_dssp CCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSEEEE
T ss_pred ECCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCCcEEEE
Confidence 99999999998999999999999999999999999999999999999999999852257888999 89999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
|..|+||+||++|++.+|+.++++.+..++...|++..+++|+||++++|++|+++++++|+++++.+|+|+.++++++.
T Consensus 160 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~ 239 (449)
T 2w70_A 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKV 239 (449)
T ss_dssp ETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEE
T ss_pred ECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEcCCCCEEEEeceecccccCCcce
Confidence 99999999999999999999999998887777788889999999997799999999998899999999999999999999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
.+.+|++.++++..+++.+.+.++++++||.|++++||++++ |++||||||||+++++++++.++|+|++++++++++|
T Consensus 240 ~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G 318 (449)
T 2w70_A 240 VEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAG 318 (449)
T ss_dssp EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHHT
T ss_pred eeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCEEEEEEECCCCccchHHHHHhCCCHHHHHHHHHCC
Confidence 999999779999999999999999999999999999999998 7799999999999999999999999999999999999
Q ss_pred CCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcC
Q psy15244 375 KSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 375 ~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~ 454 (1427)
.+++ +.+.++...++++++++++++| ..|.|..|.+..+..|..++++++ ...+.|..+++++++++|+|+++|+
T Consensus 319 ~~l~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~v~~~-~~~~~g~~~~~~~~~~~~~v~~~g~ 393 (449)
T 2w70_A 319 QPLS---IKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 393 (449)
T ss_dssp CCCS---SCGGGCCCCSEEEEEEEECBCT-TTCCBCCEECCEEECCCSTTEEEE-CCCCTTCEECSSSCSEEEEEEEEES
T ss_pred CCCC---CchhccccceeEEEEeecccCc-cccCCCCCEeceEECCCCCcEEEE-eccccCCEeccccCcceEEEEEEcC
Confidence 9875 3344556679999999999999 889999999988888887888877 4567899999999999999999999
Q ss_pred CHHHHHHHHHHHhhccEEcccccCHHHHHhhcCCcccccCCccccccccCc
Q psy15244 455 TYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDN 505 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~ 505 (1427)
|+++|++++++++++++++|++|||+||+++|+||+|++| +++|+||+++
T Consensus 394 ~~~~a~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 443 (449)
T 2w70_A 394 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHG-GTNIHYLEKK 443 (449)
T ss_dssp SHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHTCHHHHHC-CCCTTHHHHH
T ss_pred CHHHHHHHHHHHHhhcEEeCcCCCHHHHHHHHcChhhccC-Cceehhhhhh
Confidence 9999999999999999999999999999999999999999 9999999875
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-61 Score=566.85 Aligned_cols=333 Identities=18% Similarity=0.229 Sum_probs=256.3
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
..++|+|+|||||||+|++. .+|+++||++|++.|++ +|+++||+|+++ .++.+|++++.+++..+++.
T Consensus 9 ~~~~v~I~DtTLRDG~Q~~~-~~~~~~~Kl~ia~~L~~--~Gv~~IE~g~p~--------~~~~d~e~v~~i~~~~~~~~ 77 (370)
T 3rmj_A 9 QTNRVIIFDTTLRDGEQSPG-AAMTKEEKIRVARQLEK--LGVDIIEAGFAA--------ASPGDFEAVNAIAKTITKST 77 (370)
T ss_dssp -CCBCEEEECCCCCCTTSTT-CCCCHHHHHHHHHHHHH--HTCSEEEEEEGG--------GCHHHHHHHHHHHTTCSSSE
T ss_pred CCCCEEEEECCCCccccCCC-CCcCHHHHHHHHHHHHH--cCCCEEEEeCCC--------CCHHHHHHHHHHHHhCCCCe
Confidence 35789999999999999997 58999999999999999 799999998643 36789999999999999999
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHh----cCCCEEEEeccCChHHH--------------HHHHHHHHHHhcCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQ----AGIDIFRVFDPLNSVPN--------------LVKGMDAVQQVTGGS 796 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~----~Gid~~rif~~~nd~~~--------------~~~~i~~a~~~G~~~ 796 (1427)
+++|+|+. ..++++|.+ +|+++|++|.++||+++ +..+++++++.|.
T Consensus 78 i~~l~r~~-------------~~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~-- 142 (370)
T 3rmj_A 78 VCSLSRAI-------------ERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTD-- 142 (370)
T ss_dssp EEEEEESS-------------HHHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCS--
T ss_pred EEEEecCC-------------HHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 99999862 344677766 99999999999999873 3456778888887
Q ss_pred cEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC---ceEEEeecC
Q psy15244 797 TIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN---ILIHVHTHD 873 (1427)
Q Consensus 797 ~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~---ipi~~H~Hn 873 (1427)
.+ +|. +||.++++++|++++++.+.++||++|+||||+|+++|.+++++|+++++++|+ ++|++||||
T Consensus 143 -~v----~~~----~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hn 213 (370)
T 3rmj_A 143 -DV----EFS----CEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHN 213 (370)
T ss_dssp -CE----EEE----EETGGGSCHHHHHHHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBC
T ss_pred -EE----EEe----cCCCCccCHHHHHHHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCC
Confidence 44 233 778889999999999999999999999999999999999999999999999986 899999999
Q ss_pred CcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHHhCCCCCCCC
Q psy15244 874 MAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN----TDKRCGIDLHDVCDYSSYWRKVRELYAPAHN 949 (1427)
Q Consensus 874 d~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~----~g~~tgidl~~L~~l~~~v~~~~g~~~~~~k 949 (1427)
|+|||+||+++|++|||++||+|++|||||+||++||+|+++|+. +|++|++|+++|.++++++++.+|+++++|+
T Consensus 214 d~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~ 293 (370)
T 3rmj_A 214 DLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNK 293 (370)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHTHHHHCCBCCCCGGGHHHHHHHHHHHHTCCCCSSC
T ss_pred CCChHHHHHHHHHHhCCCEEEEeccccCcccccccHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999974 4999999999999999999999999999999
Q ss_pred cccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCc-CcccEEEecCCCccHHHHHHHHHHCCC--C-HHHHHHHHHHHH
Q psy15244 950 LLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKA-ASSEAYLYEIPGGQYTNLKFRTMSFGL--D-FEDVKRAYRTAN 1025 (1427)
Q Consensus 950 pivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g-~~~~v~~~~~pGg~~snl~~ql~~~gl--~-~~ev~~~~~~v~ 1025 (1427)
|+||.|+|+|++|+|++++.|++.+|+||+ |+..| ..++++++++||. +++..+|+++|+ . .+++.+.+.+++
T Consensus 294 p~vG~~aF~h~sGiH~d~i~k~~~~Ye~~~-P~~vG~~~~~i~~~~~sG~--~~i~~~l~~~g~~~~~~~~~~~~~~~~k 370 (370)
T 3rmj_A 294 AIVGANAFSHESGIHQDGVLKHRETYEIMS-AESVGWATNRLSLGKLSGR--NAFKTKLADLGIELESEEALNAAFARFK 370 (370)
T ss_dssp TTTSTTTTC--------------CCSCCCC-HHHHTCC------------------------------------------
T ss_pred CccchhHHHhcccccHHHHHhCchhccccC-HHHcCCCCceEeccCCCCH--HHHHHHHHHcCCCCCcHHHHHHHHHHhC
Confidence 999999999999999999999999999999 67777 5779999999996 599999999999 3 456666666553
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-57 Score=538.71 Aligned_cols=336 Identities=14% Similarity=0.151 Sum_probs=272.9
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
|++|+|+|||||||+|++. ++|+++||++|++.|++ +|+++||+|+|+. .+..++.++.+++..+++.+
T Consensus 1 m~~v~I~DtTLRDG~Q~~~-~~~~~~~k~~ia~~L~~--~Gv~~IE~g~p~~--------~~~~~~~~~~i~~~~~~~~v 69 (382)
T 2ztj_A 1 MREWKIIDSTLREGEQFEK-ANFSTQDKVEIAKALDE--FGIEYIEVTTPVA--------SPQSRKDAEVLASLGLKAKV 69 (382)
T ss_dssp CCCCEEEEEEETGGGGSTT-CCCCHHHHHHHHHHHHH--HTCSEEEECCTTS--------CHHHHHHHHHHHTSCCSSEE
T ss_pred CCceEEEECCCCcccCCCC-CCcCHHHHHHHHHHHHH--cCcCEEEEcCCcC--------CHHHHHHHHHHHhcCCCcEE
Confidence 3579999999999999986 79999999999999999 7999999998764 23346778888888889999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCCh-------------HHHHHHHHHHHHHhcCCCcEEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNS-------------VPNLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd-------------~~~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
++++|+ +++ .+++|.++|+++|++|+++|+ ++++..+++++++.|. ..++.
T Consensus 70 ~~~~r~--------~~~-----di~~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~---~~~v~ 133 (382)
T 2ztj_A 70 VTHIQC--------RLD-----AAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAP---HVEVR 133 (382)
T ss_dssp EEEEES--------CHH-----HHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCT---TSEEE
T ss_pred EEEccc--------Chh-----hHHHHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---CEEEE
Confidence 999986 233 388999999999999999998 6788999999999993 23444
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHc-CCceEEEeecCCcchHHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An 881 (1427)
++++ +.++++++|++++++++.++ |++|+||||+|+++|.+++++|+.|++.+ |+++|++|||||+|||+||
T Consensus 134 ~~~e------d~~~~~~~~~~~~~~~~~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN 206 (382)
T 2ztj_A 134 FSAE------DTFRSEEQDLLAVYEAVAPY-VDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIAN 206 (382)
T ss_dssp EEET------TTTTSCHHHHHHHHHHHGGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHH
T ss_pred EEEE------eCCCCCHHHHHHHHHHHHHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHH
Confidence 4554 45689999999999999999 99999999999999999999999999985 6999999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC---CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhh
Q psy15244 882 TLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT---DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDL 958 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~---g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~ 958 (1427)
+++|++|||++||+|++|||||+||++||+|+++|+.+ |+++++|+++|.++++++++.+|+++|+++|++|.++|+
T Consensus 207 ~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv~~L~~~~~~g~~t~idl~~L~~~s~~v~~~~~~~~~~~~p~vG~~~f~ 286 (382)
T 2ztj_A 207 AYEAIEAGATHVDTTILGIGERNGITPLGGFLARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNNYITGETAFS 286 (382)
T ss_dssp HHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHHTCCCCTTCTTTSTTTTE
T ss_pred HHHHHHhCCCEEEEccccccccccchhHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCcCCCcCCcchhh
Confidence 99999999999999999999999999999999999754 478999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHc
Q psy15244 959 HDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLL 1028 (1427)
Q Consensus 959 ~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~l 1028 (1427)
|++|+|.+++.|++..|++|+ |+..|..+.++.+ +++|.+ ++...|+++|+ ..+++.+.+.+++++-
T Consensus 287 h~sGiH~~g~~k~~~~Ye~~~-P~~vG~~~~v~~~s~~sG~~--av~~~l~~~g~~~~~~~~~~~~~~vk~~~ 356 (382)
T 2ztj_A 287 HKAGMHLKAIYINPEAYEPYP-PEVFGVKRKLIIASRLTGRH--AIKARAEELGLHYGEEELHRVTQHIKALA 356 (382)
T ss_dssp ECCHHHHHHHHHCGGGGCSSC-GGGGTCCCEECCC--------------------------------------
T ss_pred eecccCCchhhcChhhhcccC-HHHcCCccEEEecccchhHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7778888888885 789986 89999999999 6667777777777654
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=533.64 Aligned_cols=335 Identities=15% Similarity=0.108 Sum_probs=288.9
Q ss_pred cccccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC
Q psy15244 651 NSVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI 730 (1427)
Q Consensus 651 ~~~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~ 730 (1427)
++..++++|+|+|||||||+|++. ..|++++|++|++.|++ +|++.||++.++. .+..|+.++.+.+..
T Consensus 32 ~~~~~~~~V~I~DtTLRDG~Q~~~-~~~s~eeKl~Ia~~L~~--~Gv~~IEvG~P~a--------sp~d~~~~~~i~~~~ 100 (423)
T 3ivs_A 32 DFLSRVNNFSIIESTLREGEQFAN-AFFDTEKKIQIAKALDN--FGVDYIELTSPVA--------SEQSRQDCEAICKLG 100 (423)
T ss_dssp GGGCCTTSCEEEECTTTGGGGSTT-CCCCHHHHHHHHHHHHH--HTCSEEEECCTTS--------CHHHHHHHHHHHTSC
T ss_pred ccccCCCcEEEEECCCCCCCCCCC-CCcCHHHHHHHHHHHHH--cCCCEEEEeeccc--------CHHHHHHHHHHHhcC
Confidence 344567889999999999999986 68999999999999999 7999999976542 445677888888776
Q ss_pred CCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCC
Q psy15244 731 PNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGS 796 (1427)
Q Consensus 731 p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~ 796 (1427)
.+..+..++|.. ...+++|.++|++.++||.+.|+.+ .+..+++++++.|.
T Consensus 101 ~~~~v~~~~r~~-------------~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~-- 165 (423)
T 3ivs_A 101 LKCKILTHIRCH-------------MDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGI-- 165 (423)
T ss_dssp CSSEEEEEEESC-------------HHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTC--
T ss_pred CCCEEEEeeccC-------------hhhHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC--
Confidence 666666666642 2348999999999999999999853 45567889999998
Q ss_pred cEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcc
Q psy15244 797 TIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAG 876 (1427)
Q Consensus 797 ~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~G 876 (1427)
.+++.. ++.++++++|++++++.+.++|+++|+||||+|+++|.+++++|+.|++.+ +++|++|+|||+|
T Consensus 166 -~V~~~~--------eda~r~d~~~~~~v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~G 235 (423)
T 3ivs_A 166 -EVRFSS--------EDSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVV-SCDIECHFHNDTG 235 (423)
T ss_dssp -EEEEEE--------ESGGGSCHHHHHHHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHC-SSEEEEEEBCTTS
T ss_pred -EEEEEE--------ccCcCCCHHHHHHHHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhhc-CCeEEEEECCCCc
Confidence 766542 345589999999999999999999999999999999999999999999987 8999999999999
Q ss_pred hHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC---CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccc
Q psy15244 877 TGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT---DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~---g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG 953 (1427)
||+||+++|++|||++||+|++|||||+||++||+|+++|... ++++++|++.|.++++++++++|+++|+|||+||
T Consensus 236 lAvAN~laAv~aGa~~vd~ti~GlGERaGNa~Le~vv~~L~~~~~~~~~~~idl~~L~~is~~v~~~~~~~v~~~kpivG 315 (423)
T 3ivs_A 236 MAIANAYCALEAGATHIDTSILGIGERNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQIPFNNYITG 315 (423)
T ss_dssp CHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHTTCCCCTTCTTTS
T ss_pred hHHHHHHHHHHhCCCEEEEecccccCcccchhHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchh
Confidence 9999999999999999999999999999999999999998753 6789999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEe-cCCCccHHHHHHHHHHCCC--CHHHHHHHHHHH
Q psy15244 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLY-EIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTA 1024 (1427)
Q Consensus 954 ~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~-~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v 1024 (1427)
.|+|+|++|+|++++.|++.+|+||+ |+..|.+++++++ +++|.. +++..|+++|+ ..+++.+.+.++
T Consensus 316 ~~aFah~sGiH~dgilk~~~tYe~~~-Pe~vG~~r~~~v~~k~SG~~--~i~~~l~~lG~~l~~~~~~~~~~~v 386 (423)
T 3ivs_A 316 MCAFTHKAGIHAKAILANPSTYEILK-PEDFGMSRYVHVGSRLTGWN--AIKSRAEQLNLHLTDAQAKELTVRI 386 (423)
T ss_dssp TTTTEEECSGGGGGSSSCGGGCCSSC-GGGGTCCCCEEESSCCCTHH--HHHHHHHHTTCCC---CTTTSSTTT
T ss_pred HhHHHhhcchhHHHHhCCccccCCcC-HHHcCCcceEEeccccCCHH--HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 8888888999985 999974 99999999999 333333444343
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=519.58 Aligned_cols=290 Identities=17% Similarity=0.185 Sum_probs=227.4
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
..++|+|+|||||||+|++ +++|+++||++|++.|++ +|+++||+|.++ .++++|++++.+++..+++.
T Consensus 3 ~~~~v~I~DttlRDG~Q~~-~~~~~~~~Kl~ia~~L~~--~Gv~~IE~g~p~--------~~~~d~e~v~~i~~~~~~~~ 71 (325)
T 3eeg_A 3 LGKRIFVFDTTLRDGEQVP-GCQLNTEEKIIVAKALDE--LGVDVIEAGFPV--------SSPGDFNSVVEITKAVTRPT 71 (325)
T ss_dssp -CEECEEEECGGGCC--------CCTTHHHHHHHHHHH--HTCSEEEEECTT--------SCHHHHHHHHHHHHHCCSSE
T ss_pred CCCceEEEECCCCCcccCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCC--------CCHhHHHHHHHHHHhCCCCE
Confidence 3467999999999999998 589999999999999999 799999999653 36778999999999999999
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhc----CCCEEEEeccCChHHH--------------HHHHHHHHHHhcCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQA----GIDIFRVFDPLNSVPN--------------LVKGMDAVQQVTGGS 796 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~----Gid~~rif~~~nd~~~--------------~~~~i~~a~~~G~~~ 796 (1427)
+++|+|+. .+++++|.++ |+++|++|+++||+++ +..+++++++.|.
T Consensus 72 i~~l~r~~-------------~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~-- 136 (325)
T 3eeg_A 72 ICALTRAK-------------EADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVH-- 136 (325)
T ss_dssp EEEECCSC-------------HHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSS--
T ss_pred EEEeecCC-------------HHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--
Confidence 99999873 4567888887 9999999999999874 3578999999998
Q ss_pred cEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC---ceEEEeecC
Q psy15244 797 TIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN---ILIHVHTHD 873 (1427)
Q Consensus 797 ~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~---ipi~~H~Hn 873 (1427)
.+ +|. +|+.++++++|++++++++.++|+++|+||||+|+++|.+++++|+++++++|+ ++|++|+||
T Consensus 137 -~v----~f~----~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hn 207 (325)
T 3eeg_A 137 -EV----EFF----CEDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHN 207 (325)
T ss_dssp -EE----EEE----EETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCC
T ss_pred -EE----EEE----ccccccchHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCC
Confidence 54 333 778889999999999999999999999999999999999999999999999986 999999999
Q ss_pred CcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHHhCCCCCCCC
Q psy15244 874 MAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN----TDKRCGIDLHDVCDYSSYWRKVRELYAPAHN 949 (1427)
Q Consensus 874 d~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~----~g~~tgidl~~L~~l~~~v~~~~g~~~~~~k 949 (1427)
|+|||+||+++|+++||++||+|++||||++||++||+|+++|+. +|++|++|+++|.++++++++.+|+++++++
T Consensus 208 d~GlA~AN~laA~~aGa~~vd~tv~GlGer~GN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~ 287 (325)
T 3eeg_A 208 DLGLATANSLAALQNGARQVECTINGIGERAGNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLMRMQVQSNK 287 (325)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEEBGGGCCSTTCCCBHHHHHHHHHHTHHHHCEECCCCGGGHHHHHHHHHHHTTC------
T ss_pred CCCHHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999985 5899999999999999999999999999999
Q ss_pred cccccchhhhhHHHHHHHHHHhhhhcCCCC
Q psy15244 950 LLWRCGIDLHDVCDYSSYWRKVRELYAPFE 979 (1427)
Q Consensus 950 pivG~~~f~~~~~~~~~~~~~~~~~Y~~f~ 979 (1427)
|+||.++|+|++|+|++++.|++.+|+||+
T Consensus 288 p~vG~~af~h~sGiH~~~~~k~~~~ye~~~ 317 (325)
T 3eeg_A 288 AIVGRNAFAHSSGIHQDGFLKHRETYEIID 317 (325)
T ss_dssp ------------------------------
T ss_pred CccchhHHHHhccccHHHHhcChhhcCCCC
Confidence 999999999999999999999999999998
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-56 Score=528.03 Aligned_cols=328 Identities=15% Similarity=0.196 Sum_probs=294.9
Q ss_pred ccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEec-----cCCCchhhhhhccccChHHHHHHHHH
Q psy15244 654 RKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEM-----WGGAVSHTCLKFLKECPWERLAELRE 728 (1427)
Q Consensus 654 ~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~-----~ggatfd~~~rfl~e~p~erl~~lr~ 728 (1427)
+.+++|+|+|||||||+|++ +++|++++|++|++.|++ +|+++||+ |++++|+. +|..+++|+.++.+++
T Consensus 4 ~~~~~v~i~DttlRDG~Q~~-~~~~~~e~k~~i~~~L~~--~Gvd~IEvG~~~g~p~ssp~~--g~~~~~~~e~l~~i~~ 78 (345)
T 1nvm_A 4 NPSKKLYISDVTLRDGSHAI-RHQYTLDDVRAIARALDK--AKVDSIEVAHGDGLQGSSFNY--GFGRHTDLEYIEAVAG 78 (345)
T ss_dssp CCCCBCEEEECTTTHHHHHT-TTCCCHHHHHHHHHHHHH--HTCSEEECSCTTSTTCCBTTT--BCCSSCHHHHHHHHHT
T ss_pred CCCCCcEEEECCCCcccCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCCCCCcc--cCCCCCHHHHHHHHHh
Confidence 34578999999999999996 699999999999999999 79999999 78888883 8889999999999999
Q ss_pred hCCCCceeee-ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy15244 729 LIPNIPFQMI-LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAG 807 (1427)
Q Consensus 729 ~~p~~~~qml-~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~ 807 (1427)
.+|++++++| .++.+ ..+|+++|.++|+|.++|++++|++++++.+++++++.|. .+++.++.+
T Consensus 79 ~~~~~~i~~l~~p~~~-----------~~~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~---~v~~~~~~a- 143 (345)
T 1nvm_A 79 EISHAQIATLLLPGIG-----------SVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGM---DTVGFLMMS- 143 (345)
T ss_dssp TCSSSEEEEEECBTTB-----------CHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTC---EEEEEEEST-
T ss_pred hCCCCEEEEEecCCcc-----------cHHHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCC---EEEEEEEeC-
Confidence 9999999999 44321 3568999999999999999999999999999999999999 887776532
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHH
Q psy15244 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 808 d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
++++++|+.++++.+.++|+++|+|+||+|.++|.+++++|+++|+++| ++||++|+|||+|+|+||+++|+
T Consensus 144 -------~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~ 216 (345)
T 1nvm_A 144 -------HMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAV 216 (345)
T ss_dssp -------TSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999996 89999999999999999999999
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSS 966 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~ 966 (1427)
++||++||+|++|||+|+||++||+++++|+.+|+++++|+++|.++++++++..
T Consensus 217 ~aGa~~vd~tv~GlG~~aGN~~le~lv~~L~~~g~~~~idl~~l~~~~~~~~~~~------------------------- 271 (345)
T 1nvm_A 217 EEGCDRVDASLAGMGAGAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPL------------------------- 271 (345)
T ss_dssp HTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGG-------------------------
T ss_pred HcCCCEEEecchhccCCccCcCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999988888887764410
Q ss_pred HHHHhhhhcCCCCCCCCCcCcccEEEecCCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHH
Q psy15244 967 YWRKVRELYAPFECTDLKAASSEAYLYEIPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADL 1044 (1427)
Q Consensus 967 ~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~ 1044 (1427)
+.. + .+.++++|.|++ ||++||+.+|++++|+ +|+. .+++.++|++.||||+||+|||+
T Consensus 272 -----~~~--~------~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~v~~~~~~i~d~ 332 (345)
T 1nvm_A 272 -----QDR--P------VRVDRETLGLGY-AGVYSSFLRHAEIAAAKYNLKT-----LDILVELGHRRMVGGQEDMIVDV 332 (345)
T ss_dssp -----CSS--C------CSCCHHHHHHHH-HTCCTTHHHHHHHHHHHHTCCH-----HHHHHHHHHHTCCTTCTHHHHHH
T ss_pred -----hcC--C------CCCChHHHheec-cccchhHHHHHHHHHHhcCCCH-----HHHHHHcCCCceECCcHHHHHHH
Confidence 000 1 235688999999 9999999999999888 6544 47788999999999999999999
Q ss_pred HHHHHHcC
Q psy15244 1045 AIFMTQEK 1052 (1427)
Q Consensus 1045 a~~~v~~~ 1052 (1427)
|+|||+|+
T Consensus 333 a~~~~~~~ 340 (345)
T 1nvm_A 333 ALDLLAAH 340 (345)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99999975
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=516.28 Aligned_cols=298 Identities=15% Similarity=0.173 Sum_probs=263.2
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHH-HHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHH------
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSP-FVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRE------ 728 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~-~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~------ 728 (1427)
.++|+|+|||||||+|++. ..|++++|++|++ .|++ +|+++||+|++++ +++||++++.+++
T Consensus 17 ~~~v~I~DtTlRDG~Q~~~-~~~~~~~k~~i~~~~L~~--~Gv~~IE~g~~~~--------~~~~~~~v~~~~~~~~~~~ 85 (337)
T 3ble_A 17 ETRLEILDVTLRDGEQTRG-VSFSTSEKLNIAKFLLQK--LNVDRVEIASARV--------SKGELETVQKIMEWAATEQ 85 (337)
T ss_dssp --CCEEEECHHHHHTTSTT-CCCCHHHHHHHHHHHHHT--TCCSEEEEEETTS--------CTTHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCCCCCC-CCcCHHHHHHHHHHHHHH--cCCCEEEEeCCCC--------ChhHHHHHHHHHhhhhhhc
Confidence 3579999999999999997 5699999999999 9999 8999999998764 6899999999998
Q ss_pred hCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcC
Q psy15244 729 LIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTG 794 (1427)
Q Consensus 729 ~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~ 794 (1427)
..|++.+++|+|+. + ++++|.++|+|.|+||.++|+.+ ++..+++++++.|.
T Consensus 86 ~~~~~~i~~l~~~~-------------~-~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~ 151 (337)
T 3ble_A 86 LTERIEILGFVDGN-------------K-TVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGL 151 (337)
T ss_dssp CGGGEEEEEESSTT-------------H-HHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEccch-------------h-hHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 57888999998863 1 59999999999999999999874 67788999999999
Q ss_pred CCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCC
Q psy15244 795 GSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDM 874 (1427)
Q Consensus 795 ~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd 874 (1427)
.+++.+++ +|+.++++++|++++++++.++|+++|+||||+|+++|.+++++|+++++++|+++|++|+|||
T Consensus 152 ---~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd 223 (337)
T 3ble_A 152 ---KINVYLED-----WSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHND 223 (337)
T ss_dssp ---EEEEEEET-----HHHHHHHCHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCT
T ss_pred ---EEEEEEEE-----CCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 77766543 2335689999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccc
Q psy15244 875 AGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENT-DKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWR 953 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~-g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG 953 (1427)
+|||+||+++|++|||++||+|++||||++||++||+|+++|+.+ |+++++|+++|.++++++++.+|+++++++|++|
T Consensus 224 ~GlA~AN~laAv~aGa~~vd~tv~GlG~~aGN~~~E~lv~~L~~~~g~~tgidl~~L~~~~~~v~~~~~~~~~~~~~~vg 303 (337)
T 3ble_A 224 YDLSVANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTIHDKSNSKTNINEIAITEASRLVEVFSGKRISANRPIVG 303 (337)
T ss_dssp TSCHHHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHHHHHSSCCCCCCGGGHHHHHHHHHHHHCCCCCTTCTTTS
T ss_pred cchHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCCCccchh
Confidence 999999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCc
Q psy15244 954 CGIDLHDVCDYSSYWRKVRELYAPFECTDLKAAS 987 (1427)
Q Consensus 954 ~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~ 987 (1427)
.++|+|++|+|.+++.+++..|+||+ |+..|..
T Consensus 304 ~~~f~h~~GiH~~g~~k~~~~ye~~~-P~~vG~~ 336 (337)
T 3ble_A 304 EDVFTQTAGVHADGDKKGNLYANPIL-PERFGRK 336 (337)
T ss_dssp TTTTCC------------CTTCCSCC-GGGGTCC
T ss_pred hhhhheecccCcCceeCCccccCCCC-hHHcCCC
Confidence 99999999999999999999999999 6666653
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=497.45 Aligned_cols=330 Identities=13% Similarity=0.117 Sum_probs=273.7
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CC
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PN 732 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~ 732 (1427)
.+.+.|+|||||||+|++. ..|++++|++|++.|++ +||+.||+|.++. ++..++.++.+.+.. ++
T Consensus 69 ~~~p~i~DtTLRDGeQ~~g-~~~s~eeKl~Ia~~L~~--lGVd~IEaGfP~a--------sp~D~e~v~~i~~~~l~~~~ 137 (644)
T 3hq1_A 69 DRAPLWCAVDLRDGNQALI-DPMSPARKRRMFDLLVR--MGYKEIEVGFPSA--------SQTDFDFVREIIEQGAIPDD 137 (644)
T ss_dssp CSCCEEEECCCCCCGGGCS-SCCCHHHHHHHHHHHHH--HTCSEEEEECTTT--------CHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCEEEECCCCccccCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------ChhHHHHHHHHHhcCCCCCC
Confidence 4678999999999999985 78999999999999999 7999999987654 344577788887764 47
Q ss_pred CceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH-----------HHH---HHHHHHHHhcCCCcE
Q psy15244 733 IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP-----------NLV---KGMDAVQQVTGGSTI 798 (1427)
Q Consensus 733 ~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~-----------~~~---~~i~~a~~~G~~~~~ 798 (1427)
+.++.|.|+. ...++..++.+..+|.+++++|.+.|+++ +++ .+++.+++.+.....
T Consensus 138 ~~i~aL~r~~---------~~did~a~eal~~a~~~~Vhif~stSd~h~~~~l~~s~eevle~~~~~v~~a~~~~~~~~~ 208 (644)
T 3hq1_A 138 VTIQVLTQCR---------PELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPG 208 (644)
T ss_dssp CEEEEEEESC---------HHHHHHHHHHHTTCSEEEEEEEEECCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred eEEEEEecCC---------HhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhccC
Confidence 8899998853 22234444455568999999999999886 333 344445555430001
Q ss_pred EEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC---CCC---EEEEccccCcCCHHHHHHHHHHHHHHcC---CceEEE
Q psy15244 799 VEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES---GAQ---VLCLKDMAGLLKPTAAKLLIGSFREKYP---NILIHV 869 (1427)
Q Consensus 799 v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~---Gad---~i~i~Dt~G~l~P~~~~~lv~~lr~~~p---~ipi~~ 869 (1427)
+...+.|. .++.++.+++|++++++.+.++ |++ +|+|+||+|+++|..++++|+.|++++| +++|++
T Consensus 209 ~~~~v~fs----~Edasrtd~dfl~ev~~aa~eaG~~Gad~~~~I~LpDTvG~~tP~~~~~li~~l~~~v~~~~~v~l~v 284 (644)
T 3hq1_A 209 TQWRFEYS----PESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSL 284 (644)
T ss_dssp SEEEEEEE----EETGGGSCHHHHHHHHHHHHHHHCCCSSSCEEEEEEESSCCSCHHHHHHHHHHHHHHSTTGGGEEEEE
T ss_pred ceEEEEEc----CcccCCCCHHHHHHHHHHHHHhcCCCCCceeEEEecCCCcccCHHHHHHHHHHHHHhcccccCceEEE
Confidence 11222343 5677899999999999999985 678 8999999999999999999999999997 589999
Q ss_pred eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCC
Q psy15244 870 HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHN 949 (1427)
Q Consensus 870 H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~k 949 (1427)
|||||+|||+||+++|++|||++||+|++|+|+|+||++||+|+++|+.+|+++++|+++|.++++++++++|+++++||
T Consensus 285 H~HND~GlAvANslaAv~AGA~~Vdgti~G~GERaGNa~LE~lv~~L~~~Gi~tgidl~~L~~is~~ve~~~g~~v~~~k 364 (644)
T 3hq1_A 285 HPHNDRGTAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERH 364 (644)
T ss_dssp EEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHHSCCCCTTC
T ss_pred ecCCCCCcHHHHHHHHHHhCCCEEEecCCCCCccccCccHHHHHHHHHhcccCCccCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhHHHHHHHHHHhhh--------------------hcCCCCCCCCCcCccc--EEEecCCCccHHHHHHHH
Q psy15244 950 LLWRCGIDLHDVCDYSSYWRKVRE--------------------LYAPFECTDLKAASSE--AYLYEIPGGQYTNLKFRT 1007 (1427)
Q Consensus 950 pivG~~~f~~~~~~~~~~~~~~~~--------------------~Y~~f~~~~~~g~~~~--v~~~~~pGg~~snl~~ql 1007 (1427)
|+||.++|+|++|+|+|+++|++. .|+||+ |+.+|.+++ +.++++||.. ++...|
T Consensus 365 piVG~~aFah~SGiHqdailK~~~~~~~~~~~~~~~~~~~~w~~tYe~id-Pe~VG~~~~~vi~v~~~SGk~--~v~~~l 441 (644)
T 3hq1_A 365 PYGGDLVYTAFSGSHQDAINKGLDAMKLDADAADCDVDDMLWQVPYLPID-PRDVGRTYEAVIRVNSQSGKG--GVAYIM 441 (644)
T ss_dssp TTTSTTTTEECCHHHHHHHHHHHHHHHHHHHHTTCCGGGSCCCCTTCSSC-GGGGTCCCEECC-------CC--CHHHHH
T ss_pred ccccccceeecccccHHHHhcCchhhhhhhhcccccccccccccccccCC-HHHcCCcceeEEeccCcCCHH--HHHHHH
Confidence 999999999999999999999974 799999 777777765 4479999986 888899
Q ss_pred H-HCCC
Q psy15244 1008 M-SFGL 1012 (1427)
Q Consensus 1008 ~-~~gl 1012 (1427)
+ ++|+
T Consensus 442 ~~~lG~ 447 (644)
T 3hq1_A 442 KTDHGL 447 (644)
T ss_dssp HHHHCC
T ss_pred HHhcCC
Confidence 8 6999
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-49 Score=473.92 Aligned_cols=388 Identities=18% Similarity=0.206 Sum_probs=324.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.+++||||+|+|+++++++++|+++|+++++++. ++..+++..++|+.+.++ |.|.+.|+++++++++|+|
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~-~~~~~~~~~~ad~~~~~~--------~~d~~~l~~~~~~~~~d~v 75 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTM-PNAHKPCLNLADEISYMD--------ISNPDEVEQKVKDLNLDGA 75 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEEC-SSCCHHHHHHCSEEEECC--------TTCHHHHHHHTTTSCCSEE
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcC-CCCCCcchhhCCeEEEec--------CCCHHHHHHHHHHcCCCEE
Confidence 4578999999999999999999999999999954 444578889999998875 6789999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
+|+ ++.++...+++.+++.|++ ||++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 76 ~~~-~~~~~~~~~a~~~~~~gl~--g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvK 150 (403)
T 4dim_A 76 ATC-CLDTGIVSLARICDKENLV--GLNEEAAIMCGDKYKMKEAFKKYNVNTARHF--VVRNENELKNALENLKLPVIVK 150 (403)
T ss_dssp ECC-SCSTTHHHHHHHHHHHTCS--SCCHHHHHHHHCHHHHHHHHHHHTCCCCCEE--CCCSHHHHHHHHHTSCSSEEEE
T ss_pred EeC-CcchhHHHHHHHHHHcCcC--CCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHhcCCCCEEEE
Confidence 998 7777888899999999984 9999999999999999999999999999987 7899999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeec-cc-cccccc
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERD-CS-MQRRYQ 292 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd-~s-~qr~~q 292 (1427)
|..|+||+||++|++.+||.++++.+.+.+ .++.+++|+||+ |.|+++.++.. +|++..+.... .. ...+..
T Consensus 151 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~----~~~~~lvEe~i~-g~e~sv~~~~~-~g~~~~~~~~~~~~~~~~~~~ 224 (403)
T 4dim_A 151 ATDLQGSKGIYIAKKEEEAIDGFNETMNLT----KRDYCIVEEFIE-GYEFGAQAFVY-KNDVLFVMPHGDETYMSHTAV 224 (403)
T ss_dssp CSCC-----CEEESSHHHHHHHHHHHHHHC----SSSCCEEEECCC-SEEEEEEEEEE-TTEEEEEEEEEEEEEESSSEE
T ss_pred ECCCCCCCCEEEECCHHHHHHHHHHHHhcC----cCCcEEEEEccC-CcEEEEEEEEE-CCEEEEEEEecceeccCCCCc
Confidence 999999999999999999999998876642 357899999999 78999999975 35665543211 11 111233
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEEEEcCCCcEEEEeeCCCCCCch--hHHHHHhCCCHHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSN-AGTVEFLLDKDDNFYFIEVNPRLQVEH--TLSEEITGIDVVQSQI 369 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G-~~~VEflvd~dG~~yfIEINpRl~ge~--~vte~~tGiDLv~~~i 369 (1427)
...+..|+ .++++.++++.+.+.++++++||.| ++|+||+++ +|++||||||||+++++ .+++.++|+|++++++
T Consensus 225 ~~~~~~p~-~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~-~~~~~~iEiN~R~~~~~~~~~~~~~~G~d~~~~~~ 302 (403)
T 4dim_A 225 PVGHYVPL-DVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILK-DNEVYIIELTGRVGANCLPELVEINYGIEYYKMIA 302 (403)
T ss_dssp EEEEEESC-CSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEE-TTEEEEEEEESSCCSTTHHHHHHHHHTSCHHHHHH
T ss_pred ceeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEE-CCcEEEEEEcCCCCCCcHHHHHHHHhCcCHHHHHH
Confidence 44566787 4999999999999999999999997 999999998 57799999999999985 5788999999999999
Q ss_pred HHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCccccc--CCCcCCCceecccCcc--c
Q psy15244 370 KIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVD--SSCPYPGLQISPDYDS--L 445 (1427)
Q Consensus 370 ~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d--~~~~~~G~~I~~~~Ds--~ 445 (1427)
++++|.++++ +.+......++ ++||++. |.|.+|++..+..|...+.+++ .....+|+.|+++||| +
T Consensus 303 ~~~~G~~~~~--~~~~~~~~~~~-~~~~~~~------~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~ 373 (403)
T 4dim_A 303 SMAISENPLV--FWSQKSKENKA-GLARMII------ETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDC 373 (403)
T ss_dssp HHHTTCCTHH--HHTTCCSSCCE-EEEEEEC------CSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGC
T ss_pred HHHcCCCccc--ccccccccccc-ceEEEEE------ecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCce
Confidence 9999998743 33443334443 5788863 6788999999888776655543 1346899999999999 7
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhccEEc
Q psy15244 446 LAKIIVHTATYKSSCEKMRRALEETQVS 473 (1427)
Q Consensus 446 l~kvi~~G~~~~eA~~r~~raL~e~~I~ 473 (1427)
+|+|+++|+|+++|++++.+++++++|+
T Consensus 374 ~g~vi~~~~~~~~a~~~~~~~~~~~~i~ 401 (403)
T 4dim_A 374 IGQIIVKEETLDKCKDKLDVIINNINII 401 (403)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHTTEEEE
T ss_pred eEEEEEEeCCHHHHHHHHHHHhccEEEE
Confidence 9999999999999999999999999875
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=458.61 Aligned_cols=282 Identities=14% Similarity=0.158 Sum_probs=251.8
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEecc----CCCchhhhhhccccChHHHHHHHHHhCCCC
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMW----GGAVSHTCLKFLKECPWERLAELRELIPNI 733 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~----ggatfd~~~rfl~e~p~erl~~lr~~~p~~ 733 (1427)
+|+|+|||||||+|++ +++|++++|++|++.|++ +|+++||+| ++++|+++++|+ ||++++.+++ +|++
T Consensus 2 ~V~I~DtTlRDG~Qs~-~~~~~~~~k~~ia~~L~~--aGv~~IEvg~~~~p~~~f~~~~~~~---~~e~l~~i~~-~~~~ 74 (320)
T 3dxi_A 2 SLKILDCTLRDGGYYT-NWDFNSKIVDAYILAMNE--LPIDYLEVGYRNKPSKEYMGKFGYT---PVSVLKHLRN-ISTK 74 (320)
T ss_dssp -CEEEECHHHHHGGGG-TTCCCHHHHHHHHHHHHT--TTCCEEEEEECCSCCSSCCCHHHHC---CHHHHHHHHH-HCCS
T ss_pred eEEEEECCcCccccCC-CCcCCHHHHHHHHHHHHH--hCCCEEEEecccCCccccccccccC---hHHHHHHHhh-ccCC
Confidence 5899999999999997 699999999999999999 899999999 789999999996 7999999998 7999
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN 813 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~ 813 (1427)
+++||+|+.| .||+|+.+.|. +.++|+|.||||+++++++.+.++++++++.|. .+++.+|++ +|.
T Consensus 75 ~~~~L~r~~~-----~~~~dv~~~~~--a~~~Gvd~~ri~~~~~nle~~~~~v~~ak~~G~---~v~~~~~~~----~~~ 140 (320)
T 3dxi_A 75 KIAIMLNEKN-----TTPEDLNHLLL--PIIGLVDMIRIAIDPQNIDRAIVLAKAIKTMGF---EVGFNVMYM----SKW 140 (320)
T ss_dssp EEEEEEEGGG-----CCGGGHHHHHG--GGTTTCSEEEEEECGGGHHHHHHHHHHHHTTTC---EEEEEECCT----TTG
T ss_pred eEEEEecCCC-----CChhhHHHHHH--hhhcCCCEEEEEecHHHHHHHHHHHHHHHHCCC---EEEEEEEeC----CCC
Confidence 9999999987 57889877554 456999999999999999999999999999999 899988875 442
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 814 KKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 814 ~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.+++++++.+.+ .++|+++|+||||+|+++|.+++++|+++++++ ++||++|+|||+|+|+||+++|+++||++|
T Consensus 141 ---~~~~~~l~~~~~-~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hn~~G~a~an~laA~~aGa~~v 215 (320)
T 3dxi_A 141 ---AEMNGFLSKLKA-IDKIADLFCMVDSFGGITPKEVKNLLKEVRKYT-HVPVGFHGHDNLQLGLINSITAIDDGIDFI 215 (320)
T ss_dssp ---GGSTTSGGGGGG-GTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHC-CSCEEEECBCTTSCHHHHHHHHHHTTCSEE
T ss_pred ---CCHHHHHHHHHH-hhCCCCEEEECcccCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCCCccHHHHHHHHHHhCCCEE
Confidence 234456666666 467999999999999999999999999999999 699999999999999999999999999999
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccchhhhhHH---HHHHHHHH
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVC---DYSSYWRK 970 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~---~~~~~~~~ 970 (1427)
|+|++|||||+||++||+|+++|+. ++++++|+..|.+++++++++. +|+++|.|+|.+.+| .|.+|...
T Consensus 216 d~si~GlG~~~GN~~~E~lv~~L~~-~~~~~~dl~~l~~~~~~~~~~~------~~~~~g~~~~~~~sg~~g~H~~~i~~ 288 (320)
T 3dxi_A 216 DATITGMGRGAGNLKMELLLTYLNK-HHGLNVDFNVLGNIITTFTPLL------EKYQWGTNLPYMLSGANNIPQKEVMD 288 (320)
T ss_dssp EEBGGGCSSTTCBCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHHHHHH------HHHCCSCCHHHHHHHHTTCCHHHHHH
T ss_pred EEeccccCCcccchhHHHHHHHHHh-ccCCCcCHHHHHHHHHHHHHHH------HhcCCCCchhhHHHhccCCCHHHHHH
Confidence 9999999999999999999999998 6788999999999999999985 678999998877666 77887766
Q ss_pred hh
Q psy15244 971 VR 972 (1427)
Q Consensus 971 ~~ 972 (1427)
.+
T Consensus 289 ~~ 290 (320)
T 3dxi_A 289 WV 290 (320)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=449.40 Aligned_cols=275 Identities=18% Similarity=0.206 Sum_probs=249.3
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
.++|+|+|||||||+|+++ ++|++++|++|++.|++ +|++.||+|+++... .+.++ .++|+.++.+++. +++.+
T Consensus 4 ~~~v~i~DtTlRDG~Q~~~-~~~~~e~k~~i~~~L~~--~Gv~~IE~g~~~~~~-~~p~~-~d~~~~~~~~~~~-~~~~~ 77 (307)
T 1ydo_A 4 PKKVTIKEVGPRDGLQNEP-VWIATEDKITWINQLSR--TGLSYIEITSFVHPK-WIPAL-RDAIDVAKGIDRE-KGVTY 77 (307)
T ss_dssp CSBCEEEECHHHHTGGGSS-SCCCHHHHHHHHHHHHT--TTCSEEEEEECSCTT-TCGGG-TTHHHHHHHSCCC-TTCEE
T ss_pred CCceEEEECCCCCCcCCCC-CCCCHHHHHHHHHHHHH--cCCCEEEECCCcCcc-ccccc-CCHHHHHHHhhhc-CCCeE
Confidence 3579999999999999997 88999999999999999 899999999765432 23444 5888887777654 88889
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChH--------------HHHHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSV--------------PNLVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~--------------~~~~~~i~~a~~~G~~~~~v~~ 801 (1427)
++|++ | ...+++|.++|++.|+||+++|+. +.+..+++++++.|. .+++
T Consensus 78 ~~l~~------------~--~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~---~v~~ 140 (307)
T 1ydo_A 78 AALVP------------N--QRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANL---TTRA 140 (307)
T ss_dssp EEECC------------S--HHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTC---EEEE
T ss_pred EEEeC------------C--HHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---EEEE
Confidence 88874 2 234999999999999999999986 356788999999999 9999
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
+++++ |++|+.++++++|++++++.+.++|+++|+|+||+|+++|.+++++|+++++.+|+++|++|+|||+|||+||
T Consensus 141 ~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN 218 (307)
T 1ydo_A 141 YLSTV--FGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALAN 218 (307)
T ss_dssp EEECT--TCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHH
T ss_pred EEEEE--ecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHH
Confidence 99998 7899999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCcccccc
Q psy15244 882 TLACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCG 955 (1427)
Q Consensus 882 ~laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~ 955 (1427)
+++|+++||++||+|++|||| ++||++||+|+++|+.+|+++++|+++|.++++++++.+|++++++.|..+..
T Consensus 219 ~laAv~aGa~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~~g~~t~idl~~L~~~~~~v~~~~~~~~~~~~~~~~~~ 298 (307)
T 1ydo_A 219 MVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQVFKS 298 (307)
T ss_dssp HHHHHHHTCCEEEEBGGGCCEETTEEEEECBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHTC
T ss_pred HHHHHHhCCCEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhHHHHHH
Confidence 999999999999999999999 89999999999999999999999999999999999999999999977766443
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-47 Score=503.82 Aligned_cols=434 Identities=19% Similarity=0.320 Sum_probs=366.7
Q ss_pred CCCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 52 PPPKTMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
|...+++||||+|+|++ +.+++++|+++|+++++++++++....+..+||+.|..+ .+.+
T Consensus 2 ~~~~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p---------~~~e 72 (1073)
T 1a9x_A 2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEP---------IHWE 72 (1073)
T ss_dssp CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSC---------CCHH
T ss_pred CCCCCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECC---------CCHH
Confidence 44456899999999987 668999999999999999999998788899999987532 4789
Q ss_pred HHHHHHHhcCCCEEEeCCCc-ccccH--HHHH--HHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC
Q psy15244 121 EIICIAKNNNVDAIHPGYGF-LSERE--DFAK--AVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT 195 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gf-lsE~~--~~a~--~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~ 195 (1427)
.|.+++++.++|+|+|++|+ ..++. .+++ .|++.|++++||++++++.+.||..+|++|+++|||+|++. .+.
T Consensus 73 ~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~ 150 (1073)
T 1a9x_A 73 VVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSG--IAH 150 (1073)
T ss_dssp HHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEE--EES
T ss_pred HHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEE--EEC
Confidence 99999999999999999985 12222 2343 78899999999999999999999999999999999999987 789
Q ss_pred CHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 196 DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 196 s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
+.+++.++++++|||+||||..|+||+|+++|++.+||.++++.+... ...+.++||+||+|++|+++++++|++|
T Consensus 151 ~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~----~~~~~vlvEe~I~G~~E~~v~v~~d~~g 226 (1073)
T 1a9x_A 151 TMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDL----SPTKELLIDESLIGWKEYEMEVVRDKND 226 (1073)
T ss_dssp SHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH----CTTSCEEEEECCTTSEEEEEEEEECTTC
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhh----CCCCcEEEEEccCCCeEEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999876653 2357899999999779999999999999
Q ss_pred cEEEeeeecccccc------ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcC-CCcEEEEeeCC
Q psy15244 276 DVVHLYERDCSMQR------RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDK-DDNFYFIEVNP 347 (1427)
Q Consensus 276 ~vv~l~erd~s~qr------~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~-dG~~yfIEINp 347 (1427)
+++++ |++++ +.+..++.+|++.++++.++++.+.+.++++++||. |.+++||++++ +|++|||||||
T Consensus 227 ~~v~~----~~~e~~dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~~~viEiNp 302 (1073)
T 1a9x_A 227 NCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302 (1073)
T ss_dssp CEEEE----EEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEES
T ss_pred CEEEE----EEEecccCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCCEEEEEecC
Confidence 98877 44443 335677888998899999999999999999999999 99999999997 68999999999
Q ss_pred CCCCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecC-CCCCccCCCCCceeeeeCCCCCccc
Q psy15244 348 RLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTE-DPKRNFQPSTGRLDVFTDPASIGIR 426 (1427)
Q Consensus 348 Rl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~ae-dp~~~f~P~~G~i~~~~~p~~~gvr 426 (1427)
|+++++.+++.+||+|+++.++++++|.+++++. . +++.+ +|. .|.|..+.+. ...| +..
T Consensus 303 R~~~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~---~-----------~i~~~~~~a-~f~p~~~~v~-~~ip---~~~ 363 (1073)
T 1a9x_A 303 RVSRSSALASKATGFPIAKVAAKLAVGYTLDELM---N-----------DITGGRTPA-SFEPSIDYVV-TKIP---RFN 363 (1073)
T ss_dssp SCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSB---C-----------TTTTTCSBS-CSCCBCSSEE-EEEE---ECC
T ss_pred CCCccHHHHHHHhCCCHHHHHHHHHcCCChHHhh---c-----------cccCccCHH-HcccCCCcEE-EEcc---ccc
Confidence 9999999999999999999999999999987531 1 23444 554 6889888763 2222 222
Q ss_pred ccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEcccccC--------HHHHHhhcCCcc--------
Q psy15244 427 VDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTN--------LPFLLNVFDDKK-------- 490 (1427)
Q Consensus 427 ~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~tn--------i~~l~~~l~~~~-------- 490 (1427)
++ .....+..+.+.++| +|+|+++|+|+++|++||.++|+ +.++|+.+| ++++.+.|.||.
T Consensus 364 ~~-~~~~~~~~~~~~~~~-~G~v~~~g~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~ 440 (1073)
T 1a9x_A 364 FE-KFAGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGLE-VGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIA 440 (1073)
T ss_dssp GG-GCTTSCCBCCSSCCC-CEEEEEEESSHHHHHHHHHHHSS-SSCSSSCCSSCTTCTTHHHHHHHHHHTCBTTHHHHHH
T ss_pred cc-ccCCCCcccCCCccC-cEEEEEEcCCHHHHHHHHHHhhc-ccccCcCccccccccccHHHHHHHHhCCCccHHHHHH
Confidence 33 112345677788887 89999999999999999999997 889999755 678998999998
Q ss_pred --cccCCccccccccCcchhhhcCCcchhHHHHHHHHHHHhhh
Q psy15244 491 --FLSGEALETNFIDDNPQLLERNSYQTCRDMKILRFIGETLV 531 (1427)
Q Consensus 491 --f~~g~~~~t~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 531 (1427)
|+.|++ +++..++.+++++++++..+|+++...+.-
T Consensus 441 ~a~~~g~~-----~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~ 478 (1073)
T 1a9x_A 441 DAFRAGLS-----VDGVFNLTNIDRWFLVQIEELVRLEEKVAE 478 (1073)
T ss_dssp HHHHTTBC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-----HHHHHHhhccCHHHHHHHHHHHHHHHHHHh
Confidence 788843 556678899999998999999988877753
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=439.59 Aligned_cols=263 Identities=17% Similarity=0.216 Sum_probs=223.1
Q ss_pred CCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCce
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPF 735 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~ 735 (1427)
+++|+|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|+++. ++++|+.++.+++..+++.+
T Consensus 3 m~~v~I~DttlRDG~Q~~-~~~~~~~~K~~i~~~L~~--~Gv~~IE~g~p~~--------~~~d~e~v~~i~~~~~~~~i 71 (293)
T 3ewb_X 3 LKKIQFFDTTLRDGEQTP-GVNFDVKEKIQIALQLEK--LGIDVIEAGFPIS--------SPGDFECVKAIAKAIKHCSV 71 (293)
T ss_dssp CEEEEEEECTTTCCC------CCCHHHHHHHHHHHHH--HTCSEEEEECGGG--------CHHHHHHHHHHHHHCCSSEE
T ss_pred CCeeEEEECCCCCcCcCC-CCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCC--------CccHHHHHHHHHHhcCCCEE
Confidence 467999999999999998 689999999999999999 7999999997652 56899999999999999999
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHH--------------HHHHHHHHHHhcCCCcEEEE
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPN--------------LVKGMDAVQQVTGGSTIVEA 801 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~--------------~~~~i~~a~~~G~~~~~v~~ 801 (1427)
++|+|+. .++ ++..++....+|+++|++|.++||+++ ++++++++++.|. .+++
T Consensus 72 ~~l~~~~--------~~d-i~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~---~v~~ 139 (293)
T 3ewb_X 72 TGLARCV--------EGD-IDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFD---VVQF 139 (293)
T ss_dssp EEEEESS--------HHH-HHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCS---CEEE
T ss_pred EEEecCC--------HHH-HHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCC---EEEE
Confidence 9999863 111 333444444479999999999999873 5778889999998 6654
Q ss_pred EEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC---ceEEEeecCCcchH
Q psy15244 802 TICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN---ILIHVHTHDMAGTG 878 (1427)
Q Consensus 802 ~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~---ipi~~H~Hnd~GlA 878 (1427)
. .++.++++++|++++++.+.++|+++|+||||+|+++|.+++++|+.+++++|+ ++|++|+|||+|||
T Consensus 140 ~--------~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla 211 (293)
T 3ewb_X 140 S--------PEDATRSDRAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMA 211 (293)
T ss_dssp E--------EETGGGSCHHHHHHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCH
T ss_pred E--------eccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChH
Confidence 3 334568999999999999999999999999999999999999999999999984 78999999999999
Q ss_pred HHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHHhCCCCCCCC
Q psy15244 879 VATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN----TDKRCGIDLHDVCDYSSYWRKVRELYAPAHN 949 (1427)
Q Consensus 879 ~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~----~g~~tgidl~~L~~l~~~v~~~~g~~~~~~k 949 (1427)
+||+++|+++||++||+|++||||++||++||+|+++|+. +|++|++|+++|.++++++++.+|+++++|+
T Consensus 212 ~AN~laA~~aGa~~vd~sv~GlGeraGN~~~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~ 286 (293)
T 3ewb_X 212 TANALAAIENGARRVEGTINGIGERAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLSGMPVPRNE 286 (293)
T ss_dssp HHHHHHHHHTTCCEEEEBGGGCCTTTCBCBHHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHHHHC---------
T ss_pred HHHHHHHHHhCCCEEEeeccccccccccHhHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999999999999999999985 5999999999999999999999999999985
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=432.47 Aligned_cols=273 Identities=18% Similarity=0.186 Sum_probs=248.3
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
..++|+|+|||||||+|++ +++|++++|++|++.|++ +|++.||+|+++.. ..++++ .++|+.++.+++ .++++
T Consensus 5 ~~~~v~i~D~tlRDG~Q~~-~~~~~~e~k~~i~~~L~~--~Gv~~IE~g~~~~~-~~~~~~-~d~~~~~~~~~~-~~~~~ 78 (302)
T 2ftp_A 5 LPKKVRLVEVGPRDGLQNE-KQPIEVADKIRLVDDLSA--AGLDYIEVGSFVSP-KWVPQM-AGSAEVFAGIRQ-RPGVT 78 (302)
T ss_dssp CCSBCEEEECTTTHHHHTS-SSCCCHHHHHHHHHHHHH--TTCSEEEEEECSCT-TTCGGG-TTHHHHHHHSCC-CTTSE
T ss_pred CCCCcEEEeCCCCCCccCC-CCCCCHHHHHHHHHHHHH--cCcCEEEECCCcCc-cccccc-cCHHHHHHHhhh-cCCCE
Confidence 3467999999999999998 589999999999999999 89999999975542 235566 478887777765 37888
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEE
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+++|++ | .+++++|.++|++.|+||++.|+++ .++++++++++.|. .++
T Consensus 79 ~~~l~~------------~--~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~---~V~ 141 (302)
T 2ftp_A 79 YAALAP------------N--LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQV---RVR 141 (302)
T ss_dssp EEEECC------------S--HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTC---EEE
T ss_pred EEEEeC------------C--HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEE
Confidence 888762 2 3569999999999999999999864 45788999999999 999
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A 880 (1427)
+.|+++ |++|+.++++++|++++++.+.++|+|+|+|+||.|+++|..++++++.+++.+|++||++|+|||+|+|+|
T Consensus 142 ~~l~~~--~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~A 219 (302)
T 2ftp_A 142 GYISCV--LGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALA 219 (302)
T ss_dssp EEEECT--TCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHH
T ss_pred EEEEEE--eeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHH
Confidence 999998 678999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccc
Q psy15244 881 TTLACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLW 952 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpiv 952 (1427)
|+++|+++||++||+|++|||| |+||++||+|+++|+.+|+++++|+++|.++++++++.+|++++++.|..
T Consensus 220 n~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (302)
T 2ftp_A 220 NIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSRAAKA 297 (302)
T ss_dssp HHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCCCCSCHHHHH
T ss_pred HHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCccchhh
Confidence 9999999999999999999999 89999999999999999999999999999999999999999999987755
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=431.13 Aligned_cols=273 Identities=19% Similarity=0.227 Sum_probs=247.1
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCcee
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQ 736 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~q 736 (1427)
++|+|+|||||||+|++. ++|++++|++|++.|++ +|++.||+|++.... .+.++ .|+|+.++.+++ .++++++
T Consensus 4 ~~v~i~D~tlRDG~Q~~~-~~~~~e~k~~i~~~L~~--~Gv~~IE~g~~~~~~-~~p~~-~d~~~~~~~~~~-~~~~~~~ 77 (298)
T 2cw6_A 4 KRVKIVEVGPRDGLQNEK-NIVSTPVKIKLIDMLSE--AGLSVIETTSFVSPK-WVPQM-GDHTEVLKGIQK-FPGINYP 77 (298)
T ss_dssp SBCEEEECTTTHHHHTCS-SCCCHHHHHHHHHHHHH--TTCSEECCEECCCTT-TCGGG-TTHHHHHHHSCC-CTTCBCC
T ss_pred CceEEEECCCCcccCCCC-CCCCHHHHHHHHHHHHH--cCcCEEEECCCcCcc-ccccc-CCHHHHHHHHhh-CCCCEEE
Confidence 579999999999999985 88999999999999999 899999999765421 13444 477877777765 6788887
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH--------------HHHHHHHHHHHhcCCCcEEEEE
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP--------------NLVKGMDAVQQVTGGSTIVEAT 802 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~--------------~~~~~i~~a~~~G~~~~~v~~~ 802 (1427)
+|+. | .+.+++|.++|++.++||+++|+.+ .+..+++++++.|. .+++.
T Consensus 78 ~l~~------------~--~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~---~v~~~ 140 (298)
T 2cw6_A 78 VLTP------------N--LKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANI---SVRGY 140 (298)
T ss_dssp EECC------------S--HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTC---EEEEE
T ss_pred EEcC------------C--HHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC---eEEEE
Confidence 7651 2 3349999999999999999999874 55678999999999 99999
Q ss_pred EEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH
Q psy15244 803 ICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882 (1427)
Q Consensus 803 i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~ 882 (1427)
++|+ |++|+.++++++|+.++++.+.++|+++|+|+||+|+++|.+++++|+.+++.+|+++|++|+|||+|||+||+
T Consensus 141 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~ 218 (298)
T 2cw6_A 141 VSCA--LGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANT 218 (298)
T ss_dssp EETT--TCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHH
T ss_pred EEEE--eeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHH
Confidence 9998 78999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCCCccccc
Q psy15244 883 LACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAHNLLWRC 954 (1427)
Q Consensus 883 laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~ 954 (1427)
++|+++||++||+|++|||| ++||+++|+++++|+.+|+++++|+++|.++++++++.+|++++++.|..|.
T Consensus 219 laA~~aGa~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (298)
T 2cw6_A 219 LMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATC 296 (298)
T ss_dssp HHHHHTTCCEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHHHHHTTCCCCCHHHHHHC
T ss_pred HHHHHhCCCEEEeecccccCCCCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhhhhhc
Confidence 99999999999999999999 8999999999999999999999999999999999999999999998877664
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=439.11 Aligned_cols=400 Identities=18% Similarity=0.229 Sum_probs=314.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+..|+|+|+|+|.....++++|+++|++++++++.++..+.+...+|+.+.++. ....+.+ .+.+.+++++.++|+|
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~-~~d~~~~--~~~~~~~~~~~~id~V 79 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPL-FEDEEAA--MDVVRQTFVEFPFDGV 79 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECT-TTCHHHH--HHHHHHHHHHSCCSEE
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCC-CCCHHHH--HHHHHHhhhhcCCCEE
Confidence 347899999999888899999999999999999999988888889999988751 1111112 4566777888999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
+|+.++.. ...+.+++.+|++ ||++++++.++||..+|++|+++|||+|++. .+.+.+++.+ .++|||+|||
T Consensus 80 ~~~~e~~~--~~~a~l~e~lglp--g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~--~~~g~P~vvK 151 (425)
T 3vot_A 80 MTLFEPAL--PFTAKAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFH--EFHTLADLEN--RKLSYPLVVK 151 (425)
T ss_dssp ECCCGGGH--HHHHHHHHHTTCS--SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EESSGGGGTT--CCCCSSEEEE
T ss_pred EECCchhH--HHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHCCCCCCcee--ccCcHHHHHH--hhcCCcEEEE
Confidence 99876533 3456778888987 9999999999999999999999999999986 6788887753 5789999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHH-----HccCCCcEEEEeeccCCceEEEEEEecc-cccEEEeeeeccccc
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEAL-----ASFGKDDMLVEKYIDRPRHIEVQILGDK-YGDVVHLYERDCSMQ 288 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~-----~~fg~~~vlVEeyIeggreieVqvl~Dg-~G~vv~l~erd~s~q 288 (1427)
|+.|+||+||++|++.+||.++++.+..... ...++..+++|+||+ |+|++|+++.++ ...++.+.++.++.+
T Consensus 152 p~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~-G~e~sv~~~~~~g~~~~~~~~~~~~~~~ 230 (425)
T 3vot_A 152 PVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID-GPEFAIETLSIQGNVHVLSIGYKGNSKG 230 (425)
T ss_dssp ESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC-SCEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred ECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec-CcEEEEEEEEeCCcEEEEeEEEEeccCC
Confidence 9999999999999999999999998765432 223567899999999 789999999753 333455678888888
Q ss_pred cccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEEEEcCCCcEEEEeeCCCCCCc---hhHHHHHhCCCH
Q psy15244 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NAGTVEFLLDKDDNFYFIEVNPRLQVE---HTLSEEITGIDV 364 (1427)
Q Consensus 289 r~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~~~VEflvd~dG~~yfIEINpRl~ge---~~vte~~tGiDL 364 (1427)
..+++..+..|++ ++++.++++.+.+.++++++|+. |++|+||+++++|++||||||||++|. |.++++++|+|+
T Consensus 231 ~~~~~~~~~~Pa~-l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~ 309 (425)
T 3vot_A 231 PFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEVGARIGGSGVSHYIVKESTGINF 309 (425)
T ss_dssp SBCCCCEEEESCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEEESSCGGGGHHHHHHHHHHCCCH
T ss_pred CccccceEeeccc-CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEEecCCCCCCchHHHHHHHHCCCH
Confidence 8888888999994 99999999999999999999996 999999999999999999999999875 568899999999
Q ss_pred HHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeC----CCCCcc-cccCCCcCCCceec
Q psy15244 365 VQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTD----PASIGI-RVDSSCPYPGLQIS 439 (1427)
Q Consensus 365 v~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~----p~~~gv-r~d~~~~~~G~~I~ 439 (1427)
++++++.++|...... + ........++....+. .+.+|++..+.. ...++| ++. ....+|+.|.
T Consensus 310 ~~~~i~~alg~~~~~~-~-~~~~~~~~~~~~~~~~--------~~~~G~~~~i~g~~~~~~~p~v~~~~-~~~~~G~~v~ 378 (425)
T 3vot_A 310 MQLVLQNALKPLESSE-F-EGEIRPVRTAGNYIIP--------VQGSGTFEKIDGLEEVKQRQEVKRVF-QFMRRGAKIL 378 (425)
T ss_dssp HHHHHHHHHSCCCGGG-S-CSCCCCSSEEEEEECC--------CCSCEEEEEEETHHHHHTCTTEEEEE-ECCCTTCEEC
T ss_pred HHHHHHHHCCCccccc-c-ccccccceEEEEEEEc--------CCCCeEEEecCCHHHHhcCCCeEEEE-EEecCCCEeC
Confidence 9999999999754321 1 1222334444443332 244576665432 123454 333 3467899998
Q ss_pred cc--CccceEEEEEEcCCHHHHHHHHHHHhhccEEcccccCH
Q psy15244 440 PD--YDSLLAKIIVHTATYKSSCEKMRRALEETQVSGVTTNL 479 (1427)
Q Consensus 440 ~~--~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv~tni 479 (1427)
++ +++++|+|+++|+|+++|.+++++++++++|. .++||
T Consensus 379 ~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~i~-~~~~i 419 (425)
T 3vot_A 379 PYPHFSGYPGFILTSHHSYEECEAFYRELDDELHII-YQNNL 419 (425)
T ss_dssp CTTCCCCCSEEEEEEESSHHHHHHHHHHHHHHCEEE-ECC--
T ss_pred CCCCCCCeEEEEEEEECCHHHHHHHHHHHhCccEEE-EeCCC
Confidence 65 45679999999999999999999999999985 34444
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=434.51 Aligned_cols=356 Identities=16% Similarity=0.145 Sum_probs=281.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
||||||+|+|..++.++++|+++|+++++++++++ +++..+||+.++++ .+.+.+.++.+++ ++|+|+|
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~--~~~~~~aD~~~~~~-------~~~d~~~~~~~~~--~~D~v~~ 69 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ--ALIRNYADEFYCFD-------VIKEPEKLLELSK--RVDAVLP 69 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT--CTTTTTSSEEEECC-------TTTCHHHHHHHHT--SSSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--ChhHhhCCEEEECC-------CCcCHHHHHHHhc--CCCEEEE
Confidence 78999999999999999999999999999987776 67788999999976 2456777777665 6999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
++|+.+++..+++.+++.|++ +||++++++.++||..+|++|+++|||+|++. .+|||+||||+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~---------------~ig~P~vvKp~ 133 (363)
T 4ffl_A 70 VNENLACIEFLNSIKEKFSCP-VLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR---------------PSKPPYFVKPP 133 (363)
T ss_dssp CCCCHHHHHHHHHHGGGCSSC-BCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS---------------CSSSCEEEECS
T ss_pred CCCChhHHHHHHHHHHHCCCc-cCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce---------------ecCCCEEEEEC
Confidence 999988777777777877775 69999999999999999999999999999874 36899999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQ 296 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie 296 (1427)
.|+||+|++++++.+++.. ....+++|+||+ |+|++|++++|+++.+++...++|..++.+++...
T Consensus 134 ~g~g~~gv~~v~~~~~~~~-------------~~~~~~~ee~i~-g~e~sv~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
T 4ffl_A 134 CESSSVGARIIYDDKDLEG-------------LEPDTLVEEYVE-GEVVSLEVVGDGSHFAVVKETLVHIDETYDCHMVT 199 (363)
T ss_dssp SCCTTTTCEEEC------C-------------CCTTCEEEECCC-SEEEEEEEEEESSCEEECCCEEEEECTTSCEEEEE
T ss_pred CCCCCcCeEEeccHHHhhh-------------hccchhhhhhcc-CcEEEEEEEEECCeEEEEEEEEeccCCcccceeec
Confidence 9999999999999988653 246899999999 89999999999888777777788887777776655
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchh-HHHHHhCCCHHHHHHHHHcCC
Q psy15244 297 IAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT-LSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 297 ~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~-vte~~tGiDLv~~~i~iA~G~ 375 (1427)
.+|. . +++.+.+.++++++||.|++++||+++++| +||||||||++++++ +++++||+|++++++++++|.
T Consensus 200 p~~~---~----~~~~~~a~~~~~~l~~~G~~~vef~~~~~~-~~viEiN~R~~g~~~~~~~~~~g~dl~~~~~~~~~g~ 271 (363)
T 4ffl_A 200 PLPA---N----PLFRQISHDLAANLPLKGIMDVEAIFGPKG-LRVIEIDARFPSQTPTVVYYSSGINLIELLFRAFTDG 271 (363)
T ss_dssp ECCC---C----HHHHHHHHHHHHTTTCEEEEEEEEEEETTE-EEEEEEECSCCSSHHHHHHHHHCCCHHHHHHHHTTTC
T ss_pred chhH---H----HHHHHHHHHHHHhCCccceeeeeeEEeCCe-EEEEEEeCCCCCChHHHHHHHHCcCHHHHHHHHHCCC
Confidence 4443 2 467889999999999999999999999765 999999999998865 899999999999999999999
Q ss_pred CCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCC-ceecccCccceEEEEEEcC
Q psy15244 376 SLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPG-LQISPDYDSLLAKIIVHTA 454 (1427)
Q Consensus 376 ~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G-~~I~~~~Ds~l~kvi~~G~ 454 (1427)
+++. ......++++.+++.++++ ..+.|..+.+. ..+...++... ..+ ....+.+++++++|+++|+
T Consensus 272 ~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~v~~vi~~G~ 339 (363)
T 4ffl_A 272 VEEI-----RAIPENKYCIYEHLMFGEN-GVLIPVGEQVL--SMGSDYGKFYE----EPGIEIFLCKGEYPVFTMVFWGK 339 (363)
T ss_dssp CCCC---------CCCEEEEEEEEECGG-GBEEECCHHHH--TTCSEEEEEEE----ETTEEEEEEESSSCEEEEEEEES
T ss_pred CCCc-----cccCCCceEEEEEEecCCC-CccCCCCceEE--ecCCCeeEEEe----cCCCCCEecCCCCceEEEEEEEC
Confidence 8752 2334456677777776553 23444433221 11111111111 111 1234678999999999999
Q ss_pred CHHHHHHHHHHHhhccEEc
Q psy15244 455 TYKSSCEKMRRALEETQVS 473 (1427)
Q Consensus 455 ~~~eA~~r~~raL~e~~I~ 473 (1427)
|++||++|++++|++++.+
T Consensus 340 ~~~eA~~k~~~al~~i~~~ 358 (363)
T 4ffl_A 340 DREETGAKRCKGLSVLKER 358 (363)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988653
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=425.60 Aligned_cols=382 Identities=16% Similarity=0.204 Sum_probs=308.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.+++||||+|+|+++++++++++++|++++++++.++ +++...+|+.+.++ |.|.+.|+++++++++|+|
T Consensus 9 ~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~--~~~~~~~d~~~~~~--------~~d~~~l~~~~~~~~~d~v 78 (391)
T 1kjq_A 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD--APAMHVAHRSHVIN--------MLDGDALRRVVELEKPHYI 78 (391)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT--CGGGGGSSEEEECC--------TTCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC--CchhhhccceEECC--------CCCHHHHHHHHHHcCCCEE
Confidence 3467999999999999999999999999999988776 46678899988764 6788999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHH-HhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEE
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAA-LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVIL 213 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a-~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVV 213 (1427)
+|++++... .+++.+++.|+ ++||++++++.++||..+|+++ +++|||+|++. .+.+.+++.++++++|||+||
T Consensus 79 ~~~~e~~~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vv 153 (391)
T 1kjq_A 79 VPEIEAIAT--DMLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYR--FADSESLFREAVADIGYPCIV 153 (391)
T ss_dssp EECSSCSCH--HHHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEE--EESSHHHHHHHHHHHCSSEEE
T ss_pred EECCCcCCH--HHHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCee--eeCCHHHHHHHHHhcCCCEEE
Confidence 999987764 46788899999 5799999999999999999999 89999999986 688999999999999999999
Q ss_pred eecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccce
Q psy15244 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293 (1427)
Q Consensus 214 KP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk 293 (1427)
||..|+||+||++|++.+|+.++++.+...+.. ++..+++|+||++++|+++.++.+++| +. +...-......+..
T Consensus 154 Kp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~g-~~-~~~~~~~~~~~~~~ 229 (391)
T 1kjq_A 154 KPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRA--GAGRVIVEGVVKFDFEITLLTVSAVDG-VH-FCAPVGHRQEDGDY 229 (391)
T ss_dssp EESCC---CCCEEECSGGGHHHHHHHHHHHSGG--GCCCEEEEECCCCSEEEEEEEEEETTE-EE-ECCCEEEEEETTEE
T ss_pred EeCCCCCCCCeEEECCHHHHHHHHHHHHhhccc--CCCCEEEEEecCCCeEEEEEEEEeCCC-eE-EccCcceEEECCEE
Confidence 999999999999999999999999887654321 357899999999889999999998766 22 22100001111222
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
...+.|++ ++++..+++.+.+.++++++||.|++++||+++++ ++||||||||++++..++...+|+|++++++++++
T Consensus 230 ~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~~~~~g~~~~~~~~~~~~ 307 (391)
T 1kjq_A 230 RESWQPQQ-MSPLALERAQEIARKVVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFL 307 (391)
T ss_dssp EEEEECCC-CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT-EEEEEEEESSCCGGGGGHHHHBSSCHHHHHHHHHT
T ss_pred EEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEECCCCCCcceeeeecCcCHHHHHHHHHc
Confidence 23456874 89999999999999999999999999999999987 69999999999988666666779999999999999
Q ss_pred CCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 374 GKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
|.++++ +...++++.+++++++|.. +....|....+. |+ ..++++. .. .+.+++.+|+|+++|
T Consensus 308 G~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-pg-~~v~~~~---~~----~~~~~~~lg~v~~~g 370 (391)
T 1kjq_A 308 GLPVGG-------IRQYGPAASAVILPQLTSQ-NVTFDNVQNAVG-AD-LQIRLFG---KP----EIDGSRRLGVALATA 370 (391)
T ss_dssp TCCCCC-------CCBCSSEEEEEECCEEEES-SCEEECGGGSCB-TT-EEEEECC---CC----CEEEECCCEEEEEEC
T ss_pred CCCCCC-------ccccCcEEEEEEEccCccc-ccccccHHHHhC-CC-CEEEEec---cC----CCCCCCeEEEEEEec
Confidence 998752 2345678889999987632 222224333333 42 3455541 12 256788899999999
Q ss_pred CCHHHHHHHHHHHhhccEEcc
Q psy15244 454 ATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~~I~G 474 (1427)
+|+++|++++++++++++++|
T Consensus 371 ~~~~~a~~~~~~~~~~i~~~~ 391 (391)
T 1kjq_A 371 ESVVDAIERAKHAAGQVKVQG 391 (391)
T ss_dssp SSHHHHHHHHHHHHHHCEEEC
T ss_pred CCHHHHHHHHHHHHhhheecC
Confidence 999999999999999999874
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=426.52 Aligned_cols=395 Identities=16% Similarity=0.192 Sum_probs=306.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.+++||||+|+|+++++++++++++|++++++++.++ +++...+|+.+.++ |.|.+.|++++++.++|+|
T Consensus 17 ~~~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~--~~~~~~ad~~~~~~--------~~d~~~l~~~~~~~~~d~V 86 (433)
T 2dwc_A 17 DSAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYAN--APAMQVAHRSYVGN--------MMDKDFLWSVVEREKPDAI 86 (433)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTT--CHHHHHSSEEEESC--------TTCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--ChhhhhcceEEECC--------CCCHHHHHHHHHHcCCCEE
Confidence 3467999999999999999999999999999998877 45677899988764 6789999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHH-HhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEE
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAA-LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVIL 213 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a-~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVV 213 (1427)
+|++++.+. .+++.+++.|+ ++||++++++.++||..+|+++ +++|||+|++. .+.+.+++.++++++|||+||
T Consensus 87 ~~~~e~~~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vv 161 (433)
T 2dwc_A 87 IPEIEAINL--DALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYM--YATTLDELYEACEKIGYPCHT 161 (433)
T ss_dssp EECSSCSCH--HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEE--EESSHHHHHHHHHHHCSSEEE
T ss_pred EECcccCCH--HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCee--EeCCHHHHHHHHHhcCCCEEE
Confidence 999997763 57788999999 6799999999999999999999 89999999986 688999999999999999999
Q ss_pred eecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecc--cccEEE-eeeeccccccc
Q psy15244 214 KAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK--YGDVVH-LYERDCSMQRR 290 (1427)
Q Consensus 214 KP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg--~G~vv~-l~erd~s~qr~ 290 (1427)
||..|+||+||++|++.+|+.++++.+..++.. ++..+++|+||++++|++|.++.+. +|+++. +...-......
T Consensus 162 Kp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~~~ 239 (433)
T 2dwc_A 162 KAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARG--SAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVGHYQID 239 (433)
T ss_dssp EECCC------EEECSGGGHHHHHHC-----------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEEECCEEEEESS
T ss_pred EECCCcCCCCeEEECCHHHHHHHHHHHHhhccc--CCCCEEEEccCCCCeeEEEEEEecccCCCCEeEEEecccceEEEc
Confidence 999999999999999999999999876554211 3578999999998899999999875 677432 22110011112
Q ss_pred cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchh--HHHHHhCCCHHHHH
Q psy15244 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT--LSEEITGIDVVQSQ 368 (1427)
Q Consensus 291 ~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~--vte~~tGiDLv~~~ 368 (1427)
+.......|++ ++++..+++.+.+.++++++||.|++++||+++++ ++||||||||++++.. +...++|+|+++++
T Consensus 240 ~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~~~~~~~g~~~~~~~ 317 (433)
T 2dwc_A 240 GDYHASWQPAE-ISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-KVWANEVSPRPHDTGMVTLASHPPGFSEFALH 317 (433)
T ss_dssp SSEEEEEESCC-CCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT-EEEEEEEESSCCGGGGGHHHHSCTTCSHHHHH
T ss_pred CEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEeCCcCCCcceehhHhccCCCHHHHH
Confidence 23344556885 99999999999999999999999999999999987 6999999999998743 33456799999999
Q ss_pred HHHHcCCCCcccc-ccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceE
Q psy15244 369 IKIAQGKSLTELG-LCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLA 447 (1427)
Q Consensus 369 i~iA~G~~l~~l~-l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~ 447 (1427)
+++++|.+++... ..+..+...++++.|++++++|. .+....|....+..|+ ..++++. ..+ ..+++.+|
T Consensus 318 ~~~~~G~~l~~~~~~~~~~~~~~~~a~~~~v~~~~~~-~~~~i~g~~~~~~~pg-~~v~~~~---~~~----~~~~~~lg 388 (433)
T 2dwc_A 318 LRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSG-YSPRFRGLVKALSVPN-ATVRLFG---KPE----AYVGRRLG 388 (433)
T ss_dssp HHHHHTCCCCCEEETTEEEECCSSCEEEEEEECSSCE-ESCEEECHHHHTTSTT-EEEEECC---CSE----ECTTCEEE
T ss_pred HHHHcCCCCCcccccccccccccccEEEEEEEcCCCC-cCcCcchHHHHhhCCC-cEEEEec---CCC----CCCCCeEE
Confidence 9999999875210 00123455678889999998863 1222224322233343 2445541 111 35678899
Q ss_pred EEEEEcCCHHHHHHHHHHHhhccEEccccc
Q psy15244 448 KIIVHTATYKSSCEKMRRALEETQVSGVTT 477 (1427)
Q Consensus 448 kvi~~G~~~~eA~~r~~raL~e~~I~Gv~t 477 (1427)
+|+++|+|+++|++++.++++.++++|..-
T Consensus 389 ~v~~~g~~~~ea~~~~~~~~~~i~~~~~~~ 418 (433)
T 2dwc_A 389 IALAWDKDVEVAKRKAEMVAHMIELRTRSS 418 (433)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEECTTS
T ss_pred EEEEEeCCHHHHHHHHHHHHhheEEEeecc
Confidence 999999999999999999999999999753
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-42 Score=406.74 Aligned_cols=359 Identities=17% Similarity=0.248 Sum_probs=296.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY 138 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~ 138 (1427)
||||+|+|+++++++++++++|++++++++.++ +++..++|+ +.+ +|.|.+.+++++ .++|+|+|++
T Consensus 1 ~iliiG~g~~g~~~~~a~~~~G~~v~~~~~~~~--~~~~~~a~~-~~~--------~~~d~~~l~~~~--~~~d~v~~~~ 67 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGYPLGLSFRFLDPSPE--ACAGQVGEL-VVG--------EFLDEGALLRFA--EGLALVTYEF 67 (369)
T ss_dssp CEEEECCSHHHHHHHHHHTTBTCCEEEEESCTT--CGGGGTSEE-EEC--------CTTCHHHHHHHH--TTCSEEEECC
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--ChHHHhhce-Eec--------CCCCHHHHHHHH--hCCCEEEECC
Confidence 699999999999999999999999999987655 455668887 543 368899999999 6899999999
Q ss_pred CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCC
Q psy15244 139 GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFG 218 (1427)
Q Consensus 139 gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~G 218 (1427)
++. +..+++.+++.| ++||++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||+||||..|
T Consensus 68 e~~--~~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~ 141 (369)
T 3aw8_A 68 ENV--PVEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFH--PVDGPEDLEEGLKRVGLPALLKTRRG 141 (369)
T ss_dssp TTC--CHHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEE--EESSHHHHHHHHTTTCSSEEEEECCC
T ss_pred CCc--CHHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCce--eeCCHHHHHHHHHHcCCCEEEEEcCC
Confidence 875 367888899999 679999999999999999999999999999987 68899999999999999999999999
Q ss_pred C-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEE
Q psy15244 219 G-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQI 297 (1427)
Q Consensus 219 g-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~ 297 (1427)
+ ||+||++|++.+|+.++++.+ ++..+++|+||++|+|++++++.|++|+++.+ ...+..++.+....+.
T Consensus 142 ~~~g~Gv~~v~~~~el~~~~~~~--------~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~-~~~~~~~~~~~~~~~~ 212 (369)
T 3aw8_A 142 GYDGKGQALVRTEEEALEALKAL--------GGRGLILEGFVPFDREVSLLAVRGRTGEVAFY-PLVENRHWGGILRLSL 212 (369)
T ss_dssp ------EEEECSHHHHHHHHTTT--------CSSSEEEEECCCCSEEEEEEEEECTTSCEEEC-CCEEEEEETTEEEEEE
T ss_pred CCCcceEEEECCHHHHHHHHHhc--------CCCcEEEEEcCCCCEEEEEEEEECCCCCEEEE-CCeeeeeeCCEEEEEE
Confidence 9 999999999999999888643 35789999999988999999999988887754 3334556666666788
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCC
Q psy15244 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377 (1427)
Q Consensus 298 aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l 377 (1427)
+|++.++++..+++.+.+.++++++||+|++++||++++ |++||||+|||+++++..+.+++|+|+++.+++.++|.++
T Consensus 213 ~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~~~~~~~~~~~~g~~l 291 (369)
T 3aw8_A 213 APAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG-EELLFNEMAPRVHNSGHWTIEGAETSQFENHLRAVLGLPL 291 (369)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHHTCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEEeCCcCCccceeeeeecCCHHHHHHHHHcCCCC
Confidence 899669999999999999999999999999999999998 7799999999999988778889999999999999999988
Q ss_pred ccccccccCcccceEEEEEEeecCCCCCccCCCCCceeee-eCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCH
Q psy15244 378 TELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVF-TDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATY 456 (1427)
Q Consensus 378 ~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~-~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~ 456 (1427)
+... ..++++.+++++++| + +..+ ..|+. .+.+ + |..+++ .+.+|+|+++|+|+
T Consensus 292 ~~~~-------~~~~~~~~~~~~~~~--------~-~~~~~~~p~~-~~~~-----~-g~~~~~--~~~lg~v~~~g~~~ 346 (369)
T 3aw8_A 292 GSTA-------PRGQSAMVNLIGEKP--------P-FAEVLKVEGA-HLHW-----Y-GKAVRP--GRKVGHITLRRDGL 346 (369)
T ss_dssp CCCC-------BCSEEEEEEEESCCC--------C-HHHHHTSTTE-EEEE-----C-CCCCCT--TCEEEEEEEEESSH
T ss_pred CCcc-------ccccEEEEEEeCCCc--------h-HHHhccCCCc-EEEE-----e-cCCCCC--CCeEEEEEEEcCCH
Confidence 6421 235688899998762 1 1111 12211 1222 2 222222 36699999999999
Q ss_pred HHHHHHHHHHhhccE
Q psy15244 457 KSSCEKMRRALEETQ 471 (1427)
Q Consensus 457 ~eA~~r~~raL~e~~ 471 (1427)
++|+++++++++.++
T Consensus 347 ~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 347 KALEEGLARLSRLVS 361 (369)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999876
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=406.03 Aligned_cols=265 Identities=16% Similarity=0.183 Sum_probs=237.4
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccc--cChHHHHHHHHHhCCCCc
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPWERLAELRELIPNIP 734 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~erl~~lr~~~p~~~ 734 (1427)
++|+|+|||||||+|++.. .|++++|++|++.|++ +|++.||+|++.. .+|+. +++|+.++.+++. ++++
T Consensus 3 ~~v~i~d~tlRDG~Q~~~~-~~~~e~k~~i~~~L~~--~Gv~~IE~g~~~~----~~~~p~~~~~~e~~~~i~~~-~~~~ 74 (295)
T 1ydn_A 3 EHVEIVEMAARDGLQNEKR-FVPTADKIALINRLSD--CGYARIEATSFVS----PKWVPQLADSREVMAGIRRA-DGVR 74 (295)
T ss_dssp CBCEEEECTTTHHHHTSSS-CCCHHHHHHHHHHHTT--TTCSEEEEEECSC----TTTCGGGTTHHHHHHHSCCC-SSSE
T ss_pred CceEEEECCCCccccCCCC-CcCHHHHHHHHHHHHH--cCcCEEEEccCcC----ccccccccCHHHHHHHHHhC-CCCE
Confidence 5799999999999999974 5999999999999999 8999999987543 23322 4899999998765 7889
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHHHHHHHhcCCCcEEE
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+++|+ . | .+.+++|.++|++.++||++.| .+++++++++++++.|. .++
T Consensus 75 v~~l~--~----------n--~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~---~V~ 137 (295)
T 1ydn_A 75 YSVLV--P----------N--MKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGL---AIR 137 (295)
T ss_dssp EEEEC--S----------S--HHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTC---EEE
T ss_pred EEEEe--C----------C--HHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC---eEE
Confidence 98886 2 2 3458999999999999999999 45677888999999999 999
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHH
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~A 880 (1427)
+.++++ |++|+.++++++|+.++++.+.++|+|+|+|+||.|.++|.+++++++.+++.+|++||++|+|||+|+|+|
T Consensus 138 ~~l~~~--~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~a 215 (295)
T 1ydn_A 138 GYVSCV--VECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALD 215 (295)
T ss_dssp EEEECS--SEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHH
T ss_pred EEEEEE--ecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHH
Confidence 999998 568998999999999999999999999999999999999999999999999999779999999999999999
Q ss_pred HHHHHHHhcCCEEEeccccCCC------CCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCCC
Q psy15244 881 TTLACVKAGADIVDVAADSMSG------ICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAH 948 (1427)
Q Consensus 881 n~laAi~AGad~VD~av~GmG~------~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~~ 948 (1427)
|+++|+++||+.||+|++|||| ++||+++|+++++|+.+|+++++|+++|.++++++++.++.+.+..
T Consensus 216 n~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~~~~~ 289 (295)
T 1ydn_A 216 NIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQALRQDKAALE 289 (295)
T ss_dssp HHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCcc
Confidence 9999999999999999999999 8999999999999999999999999999999999999999887653
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=410.34 Aligned_cols=374 Identities=15% Similarity=0.173 Sum_probs=296.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
+.+||||+|+|+++++++++|+++|+++++++.+++ +++..+||+.+.. +|.|.+.|+++++ ++|+|+
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~--~p~~~~ad~~~~~--------~~~d~~~l~~~a~--~~D~V~ 101 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA--SPAGAVADRHLRA--------AYDDEAALAELAG--LCEAVS 101 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT--CHHHHHSSEEECC--------CTTCHHHHHHHHH--HCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc--CchhhhCCEEEEC--------CcCCHHHHHHHHh--cCCEEE
Confidence 468999999999999999999999999998865544 7788899988763 4789999999995 599999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHh----cCCcE
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDE----VEFPV 211 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~----iGyPv 211 (1427)
+++ ...+..+++.+++. .++||++++++.+.||..+|++++++|||+|++. .+.+.+++.+++++ + ||+
T Consensus 102 ~~~--e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~v~~~~e~~~~~~~~~~~~-~P~ 174 (419)
T 4e4t_A 102 TEF--ENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHV--VIESAAALAALDDAALDAV-LPG 174 (419)
T ss_dssp ECC--TTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEE--EECSHHHHHTSCHHHHHTT-CSE
T ss_pred Ecc--CcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHHHHhhcccc-CCE
Confidence 654 45667888888887 4789999999999999999999999999999987 78999999998888 9 999
Q ss_pred EEeec-CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccc
Q psy15244 212 ILKAA-FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290 (1427)
Q Consensus 212 VVKP~-~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~ 290 (1427)
||||+ .|+||+|+++|++.+|+.++++.+ ++..+++|+||++++|+++.+++|.+|+++.+...+ ..++.
T Consensus 175 VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~~~e-~~~~~ 245 (419)
T 4e4t_A 175 ILKTARLGYDGKGQVRVSTAREARDAHAAL--------GGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQ-NVHHN 245 (419)
T ss_dssp EEEESSSCCTTTTEEEECSHHHHHHHHHHT--------TTCCEEEEECCCEEEEEEEEEEECTTSCEEECCCEE-EEEET
T ss_pred EEEecCCCCCCCceEEECCHHHHHHHHHhc--------CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEEeCeE-EEeeC
Confidence 99999 899999999999999999988643 468999999999889999999999888887653211 11222
Q ss_pred cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHH
Q psy15244 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 291 ~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~ 370 (1427)
......++|++.++++..+++.+.+.+++++|||.|++++||+++++|++||+|||||+++++++++.++|+|+++++++
T Consensus 246 g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~~t~~~~~~s~~~~~~r 325 (419)
T 4e4t_A 246 GILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVR 325 (419)
T ss_dssp TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeCCCCEEEEEEeCCCCCCCCeEeeccCCCHHHHHHH
Confidence 22334477986699999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHcCCCCccccccccCcccceEEEEEEeecCCCC----CccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccce
Q psy15244 371 IAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPK----RNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLL 446 (1427)
Q Consensus 371 iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~----~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l 446 (1427)
+++|.+|+++.+ ...++...+....-. .+.....+.-..+..|+ ..+++.+. + ...+ ...+
T Consensus 326 a~~G~pl~~~~~-------~~~~~m~n~lg~~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~ygk---~--~~~~--~rkm 390 (419)
T 4e4t_A 326 AMTRMPLGNPRQ-------HSPAAMLNILGDVWFPNGAAAGAVTPPWDTVAAMPA-AHLHLYGK---E--EARV--GRKM 390 (419)
T ss_dssp HHTTCCCCCCCB-------CSCEEEEEEEGGGGCTTCGGGCCCCCCHHHHHTSTT-EEEEECCC---S--CCCT--TCEE
T ss_pred HHcCCCCCCccc-------cCCeEEEEEecCccccccccccccchHHHHHHhCCC-CEEEECCC---C--CCCC--CCce
Confidence 999999864322 222555666654210 00000112111122222 22444311 1 1111 2348
Q ss_pred EEEEEEcCCHHHHHHHHHHHhhccEE
Q psy15244 447 AKIIVHTATYKSSCEKMRRALEETQV 472 (1427)
Q Consensus 447 ~kvi~~G~~~~eA~~r~~raL~e~~I 472 (1427)
|+|++.|+|.++|++++.++.+.++|
T Consensus 391 Ghv~~~~~~~~~~~~~a~~~~~~l~~ 416 (419)
T 4e4t_A 391 GHVNFTAEMRDDAVAAATACAQLLRV 416 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999987765
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=406.00 Aligned_cols=373 Identities=14% Similarity=0.183 Sum_probs=300.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
+.+||||+|+|+++++++++|+++|+++++++ .++ ++..++||+... ...+|.|.+.|.+++++ +|+|.
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~--~p~~~~ad~~~~------~~~~~~d~~~l~~~a~~--~d~i~ 91 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN--SPAKQISAHDGH------VTGSFKEREAVRQLAKT--CDVVT 91 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT--CTTGGGCCSSCC------EESCTTCHHHHHHHHTT--CSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC--CcHHHhccccce------eecCCCCHHHHHHHHHh--CCEEE
Confidence 36899999999999999999999999999998 554 667778884211 23468999999999987 78888
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCC--CHHHHHHHHHhcCCcEEE
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVT--DVDKVKEFCDEVEFPVIL 213 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~--s~eea~~~a~~iGyPvVV 213 (1427)
+.++.. ...+++.+++ |++ +||++++++.+.||..+|++++++|||+|++. .+. +.+++.++++++|||+||
T Consensus 92 ~e~e~~--~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~~~g~P~Vv 165 (403)
T 3k5i_A 92 AEIEHV--DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHR--ELVENTPAELAKVGEQLGYPLML 165 (403)
T ss_dssp ESSSCS--CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEE--EESSCCHHHHHHHHHHHCSSEEE
T ss_pred ECCCCC--CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEE--EEcCCCHHHHHHHHHHhCCCEEE
Confidence 765543 4677888888 998 89999999999999999999999999999987 566 999999999999999999
Q ss_pred eecCCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccc
Q psy15244 214 KAAFGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQ 292 (1427)
Q Consensus 214 KP~~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~q 292 (1427)
||..|+ ||+|+++|++.+|+.++++.+ ++..+++|+||++++|++|.++.|++| +..+...+..++.+.
T Consensus 166 Kp~~gg~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~E~sv~v~~~~~g--~~~~p~~~~~~~~g~ 235 (403)
T 3k5i_A 166 KSKTMAYDGRGNFRVNSQDDIPEALEAL--------KDRPLYAEKWAYFKMELAVIVVKTKDE--VLSYPTVETVQEDSI 235 (403)
T ss_dssp EESSSCCTTTTEEEECSTTSHHHHHHHT--------TTSCEEEEECCCEEEEEEEEEEECSSC--EEECCCEEEEEETTE
T ss_pred EeCCCCcCCCCEEEECCHHHHHHHHHhc--------CCCcEEEecCCCCCeEEEEEEEEcCCC--EEEeCCeeeEEeCCE
Confidence 999998 999999999999999988642 367899999999889999999999887 556677778888888
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 293 KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 293 k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
......|++.++++..+++.+.+.+++++|||.|++++||+++++|++||+|||||++++..++...+|+|+++++++.+
T Consensus 236 ~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~~~~~~s~~~~~~ra~ 315 (403)
T 3k5i_A 236 CKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCALSQFDAHLRAI 315 (403)
T ss_dssp EEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceeeeecCCCHHHHHHHHH
Confidence 88889999669999999999999999999999999999999998899999999999998744555668999999999999
Q ss_pred cCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEE
Q psy15244 373 QGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVH 452 (1427)
Q Consensus 373 ~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~ 452 (1427)
+|.|+++. .....+.++.+.+..++... ....+.-..+..|+ ..+++.+. ....+ ...+|+|++.
T Consensus 316 ~G~pl~~~-----~~~~~~~a~m~nilg~~~~~--~~~~~~~~~~~~p~-~~~~~ygk-----~~~~~--~rkmGhv~~~ 380 (403)
T 3k5i_A 316 LDLPIPAQ-----SLEIRQPSIMLNIIGGAAPD--THLQAAECALSIPN-ASIHLYSK-----GAAKP--GRKMGHITVT 380 (403)
T ss_dssp TTCCCCGG-----GGSBSSCEEEEEEECCSSSS--HHHHHHHHHTTSTT-EEEEECCC-----CSCCT--TCEEEEEEEE
T ss_pred cCCCCCcc-----cccCCCcEEEEEEecCCccc--cchhHHHHHhcCCC-CEEEECCC-----CCCCC--CCeeEEEEEE
Confidence 99998643 22334457777787654311 00001111111221 12344311 11111 3448999999
Q ss_pred cCCHHHHHHHHHHHhhcc
Q psy15244 453 TATYKSSCEKMRRALEET 470 (1427)
Q Consensus 453 G~~~~eA~~r~~raL~e~ 470 (1427)
|+|.++|++++.++++.+
T Consensus 381 ~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 381 APTMHEAETHIQPLIDVV 398 (403)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhh
Confidence 999999999999998764
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=394.81 Aligned_cols=368 Identities=18% Similarity=0.236 Sum_probs=289.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
|+||||+|+|..+..++++++++|+++++++++++. +...++|+.+.++ |.|.+.+.+++ .++|+|+|
T Consensus 1 M~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~--------~~d~~~l~~~~--~~~d~v~~ 68 (380)
T 3ax6_A 1 MKKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTPRS--PAGQVADEQIVAG--------FFDSERIEDLV--KGSDVTTY 68 (380)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTC--TTGGGSSEEEECC--------TTCHHHHHHHH--HTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC--chhhhCceEEECC--------CCCHHHHHHHH--hcCCEEEe
Confidence 579999999999999999999999999999876653 4556888877643 67889999999 56999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
+++... ..+++.+++.|++ +||+++++..++||..+|++++++|||+|++. .+.+.++ +++++|||+||||.
T Consensus 69 ~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~---~~~~~~~P~vvKp~ 140 (380)
T 3ax6_A 69 DLEHID--VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYK--LVKDLES---DVREFGFPVVQKAR 140 (380)
T ss_dssp SCSCSC--HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEE--ECSSHHH---HHHTTCSSEEEEES
T ss_pred cccCCC--HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeE--EeCCHHH---HHHhcCCCEEEEec
Confidence 987654 5677889999998 68999999999999999999999999999986 6778776 67789999999999
Q ss_pred CCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccc--ccccce
Q psy15244 217 FGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSM--QRRYQK 293 (1427)
Q Consensus 217 ~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~--qr~~qk 293 (1427)
.|+ ||+|++++++.+|+.++++ ..+++|+||++++|++|.++.|++|+++.+... +.. ++.+..
T Consensus 141 ~~~y~g~Gv~~v~~~~el~~~~~------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~~~-~~~~~~~~~~~ 207 (380)
T 3ax6_A 141 KGGYDGRGVFIIKNEKDLENAIK------------GETYLEEFVEIEKELAVMVARNEKGEIACYPVV-EMYFDEDANIC 207 (380)
T ss_dssp CCC-----EEEECSGGGGGGCCC------------SSEEEEECCCEEEEEEEEEEECSSCCEEEEEEE-EEC--------
T ss_pred CCCCCCCCeEEECCHHHHHHHhc------------CCEEEEeccCCCeeEEEEEEECCCCCEEEECCe-eeeecccCCee
Confidence 999 9999999999999876553 589999999988999999999988887654321 223 334444
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.....|++ ++++..+++.+.+.++++++||.|.+++||+++++|++||+|+|||+++++..+...+|+|+++.+++.++
T Consensus 208 ~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (380)
T 3ax6_A 208 DTVIAPAR-IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIM 286 (380)
T ss_dssp CEEEESCS-SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEESSCCGGGTHHHHHBSSCHHHHHHHHHT
T ss_pred EEEECCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEecCCCCCCceeehhhccccHHHHHHHHHh
Confidence 45677885 89999999999999999999999999999999998999999999999998778888999999999999999
Q ss_pred CCCCccccccccCcccceEEEEEEeecCCCC-CccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEE
Q psy15244 374 GKSLTELGLCQEKITPQGCAIQCHLRTEDPK-RNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVH 452 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~-~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~ 452 (1427)
|.+++...+ . +.++.+++++.+.. ..+....| +..+..| ++++. ..|..++. ..+.+|+|++.
T Consensus 287 g~~l~~~~~-----~--~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~p---~~~~~----~~g~~~~~-~~~~lg~v~~~ 350 (380)
T 3ax6_A 287 NLPLGSTEL-----L--IPAVMVNLLGEEGYYGKPALIGL-EEALAIE---GLSLH----FYGKKETR-PYRKMGHFTVV 350 (380)
T ss_dssp TCCCCCCCB-----C--SCEEEEEEEBCTTCCBSEEEESH-HHHHTST---TEEEE----ECCCSCBC-BTCEEEEEEEE
T ss_pred CCCCCCccc-----c--CceEEEEEecccccccccccchh-HHHhcCC---CCEEE----ecCCCCCC-CCCeeEEEEEE
Confidence 998864321 1 22567888876642 11111223 2223223 33332 12222222 34569999999
Q ss_pred cCCHHHHHHHHHHHhhccEEcc
Q psy15244 453 TATYKSSCEKMRRALEETQVSG 474 (1427)
Q Consensus 453 G~~~~eA~~r~~raL~e~~I~G 474 (1427)
|+|+++|.++++++++.++++-
T Consensus 351 g~~~~~a~~~~~~~~~~i~~~~ 372 (380)
T 3ax6_A 351 DRDVERALEKALRAKKILKVVS 372 (380)
T ss_dssp CSSHHHHHHHHHHHTTTCEEEE
T ss_pred eCCHHHHHHHHHHHHhhhhhhc
Confidence 9999999999999999999864
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=402.18 Aligned_cols=376 Identities=20% Similarity=0.291 Sum_probs=307.2
Q ss_pred CEEEEEecCCCccC--ccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCccccc--HHHHHHHHHCCC
Q psy15244 81 IKSVGIYSEQDKFS--AHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSER--EDFAKAVIGAGL 156 (1427)
Q Consensus 81 i~~vav~s~~d~~s--~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~--~~~a~~~e~~Gi 156 (1427)
+.+|+++++.|..+ ++...||+.|+++.. .....++.++.|+++|+++++|+|||+ +|+ ..+++.+++.|+
T Consensus 52 ~~~Vav~~~~D~~~~~p~~~~Ad~~~~~~~~-~~~~~~~~i~~I~~~a~~~~id~Vip~----sE~~l~~~a~~~e~~Gi 126 (474)
T 3vmm_A 52 KYSVAVIKDKDYFKSLADFEHPDSIYWAHED-HNKPEEEVVEQIVKVAEMFGADAITTN----NELFIAPMAKACERLGL 126 (474)
T ss_dssp HHEEEEEECGGGCSSGGGGCCCSCCSSCCSC-CCCCHHHHHHHHHHHHHHTTCSEEEES----CGGGHHHHHHHHHHTTC
T ss_pred ceEEEEEeCCCcccCCcchhhcCeEEEecCC-CCCchHHHHHHHHHHHHHcCCCEEEEC----CcccHHHHHHHHHHcCC
Confidence 45688888877654 448899999988522 222334568999999999999999994 566 689999999999
Q ss_pred ceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHH
Q psy15244 157 EFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEEN 236 (1427)
Q Consensus 157 ~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a 236 (1427)
+ ||++++++.++||..+|++|+++|||+|++. .+.+.+++.++++++|||+||||..|+||+||+++++.+||.++
T Consensus 127 ~--g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a 202 (474)
T 3vmm_A 127 R--GAGVQAAENARDKNKMRDAFNKAGVKSIKNK--RVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDE 202 (474)
T ss_dssp C--CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEE--EECSHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHH
T ss_pred C--CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHH
Confidence 8 9999999999999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-------ccCCCcEEEEeeccCCce-----------EEEE-EEecccccEEEeeeeccccccccceEEEE
Q psy15244 237 FKRAQSEALA-------SFGKDDMLVEKYIDRPRH-----------IEVQ-ILGDKYGDVVHLYERDCSMQRRYQKVIQI 297 (1427)
Q Consensus 237 ~~~a~~ea~~-------~fg~~~vlVEeyIeggre-----------ieVq-vl~Dg~G~vv~l~erd~s~qr~~qk~ie~ 297 (1427)
++.+.+++.. ++ ++.++|||||+|.+| +++. ++.|+++.++++.+++|+.+ +++.++.
T Consensus 203 ~~~~~~~~~~~~~~~a~~~-~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~~~--~~~~~~~ 279 (474)
T 3vmm_A 203 FNRVNDYLKSINVPKAVTF-EAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIG--FTETSHI 279 (474)
T ss_dssp HHHHHHHHTTSCCCTTCCC-SCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEECCCBT--TBCCEEE
T ss_pred HHHHHHHHhhccccccccC-CCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeeccCCC--ccceEEE
Confidence 9998876553 33 378999999996664 7886 45677777788889999877 7888899
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeE-EEEEEEcCCCcEEEEeeCCCCCC--chhHHHHHhCCCHHHHHHHHHc-
Q psy15244 298 APAQDMSVSVRDAITETSVRLAKSLGYSNAG-TVEFLLDKDDNFYFIEVNPRLQV--EHTLSEEITGIDVVQSQIKIAQ- 373 (1427)
Q Consensus 298 aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~-~VEflvd~dG~~yfIEINpRl~g--e~~vte~~tGiDLv~~~i~iA~- 373 (1427)
+|+ .++++.+++|.+.+.++++++||+|.+ |+||+++++|++||||||||++| ++++++.++|+|++++++++++
T Consensus 280 ~Pa-~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a~~ 358 (474)
T 3vmm_A 280 TPS-ILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCF 358 (474)
T ss_dssp ESC-CCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEGGGEEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ECC-CCCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcCCCCEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHHcC
Confidence 999 699999999999999999999999988 69999998899999999999994 5899999999999999999999
Q ss_pred CCCCccccccccCcc-cceEEEEEEeecCCCCCc--cCCCCCc--eeeeeCCCCCc----ccccCCCc----CCCceecc
Q psy15244 374 GKSLTELGLCQEKIT-PQGCAIQCHLRTEDPKRN--FQPSTGR--LDVFTDPASIG----IRVDSSCP----YPGLQISP 440 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~-~~g~ai~~ri~aedp~~~--f~P~~G~--i~~~~~p~~~g----vr~d~~~~----~~G~~I~~ 440 (1427)
|++++ +.+..+. ..+++..|+++.+++... +.|..+. |..+.-|.+.- +.++.... +.-+.+..
T Consensus 359 G~~l~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
T 3vmm_A 359 GKDAD---LPDGLLDQEPYYVADCHLYPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFE 435 (474)
T ss_dssp GGGSC---CCSSCCCCCSSEEEEEEECHHHHHHTTSSCTTCEEEEEEEEECCTTCCCTTCEEEEEEECCTTEEECTTSCG
T ss_pred CCCCC---CCcccccCCCceeEEEEEeccccccccccCCcccceeecceecccceecccceEeeccCCCCCceEEEEeeh
Confidence 99875 4455554 467888999987776322 2233322 44455554322 22221112 23344557
Q ss_pred cCccceEEEEEEcCCHHHHHHHHHHHhhccEEc
Q psy15244 441 DYDSLLAKIIVHTATYKSSCEKMRRALEETQVS 473 (1427)
Q Consensus 441 ~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~ 473 (1427)
.|||.++.++ +|.++++..+.++++++...+.
T Consensus 436 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 467 (474)
T 3vmm_A 436 AFNSIAAFEL-KGSNSQDVAESIRQIQQHAKLT 467 (474)
T ss_dssp GGCCCEEEEE-EESCHHHHHHHHHHHHHHCEEE
T ss_pred hccCceeEEe-ccccHHHHHHHHHHHHHhhhhh
Confidence 7999888666 9999999999999999988775
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=391.11 Aligned_cols=381 Identities=17% Similarity=0.216 Sum_probs=291.8
Q ss_pred EEEEEcCCHHHHHHHHHH-HHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIANRSEVAIRVARAC-NEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIagrGeia~riiraa-~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
||||+|.|.....+++++ +++|++++++++. + ..+...++ .+. .+|.|.+.|+++|+++++|+|+|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~-~--~~~~~~~~-~~~--------~~~~d~~~l~~~~~~~~~d~v~~~ 69 (424)
T 2yw2_A 2 KVLVVGNGGREHAIAWKVAQSPLVKELYVAKG-N--AGIWEIAK-RVD--------ISPTDVEKLAEFAKNEGVDFTIVG 69 (424)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTCSEEEEEEC-C--TTGGGTSE-EEC--------SCTTCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHhhCCCCCEEEEECC-C--cchhhhcc-ccc--------CCcCCHHHHHHHHHHcCCCEEEEC
Confidence 899999995444455444 5789998877653 2 22333454 221 246889999999999999999997
Q ss_pred CCcccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 138 YGFLSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 138 ~gflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
. |+. .+++.|++.|++++||++++++.++||..+|++|+++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 70 ~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~PvvvK 143 (424)
T 2yw2_A 70 P----EAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYE--VFTDFEKAKEYVEKVGAPIVVK 143 (424)
T ss_dssp S----HHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEE--EESCHHHHHHHHHHHCSSEEEE
T ss_pred C----chHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHHcCCcEEEE
Confidence 4 554 477889999999999999999999999999999999999999986 6889999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccc
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQ 292 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~q 292 (1427)
|..|+||+||++|++.+|+.++++.+... ..|| +..+++|+||+ |+|++|.++.|+ +.++.. ..+++++
T Consensus 144 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-g~E~sv~~~~~G--~~~~~~----~~~~~~~ 214 (424)
T 2yw2_A 144 ADGLAAGKGAVVCETVEKAIETLDRFLNK--KIFGKSSERVVIEEFLE-GEEASYIVMING--DRYVPL----PTSQDHK 214 (424)
T ss_dssp ESSCCTTCSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCC-SEEEEEEEEEET--TEEEEC----CCBEECC
T ss_pred eCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCC-CcEEEEEEEEcC--CEEEee----cceeecc
Confidence 99999999999999999999999876542 2344 36899999999 899999999864 433332 2222333
Q ss_pred e------------EEEEccCCCCCHHHHHHHH-HHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-h
Q psy15244 293 K------------VIQIAPAQDMSVSVRDAIT-ETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-H 353 (1427)
Q Consensus 293 k------------~ie~aPa~~l~~e~~~~l~-~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ge-~ 353 (1427)
+ ....+|++.++++.++++. +.+.++++++ +|.|++++||+++++| +||||||||+++. +
T Consensus 215 ~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~ 293 (424)
T 2yw2_A 215 RLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG-PKVLEFNVRLGDPEA 293 (424)
T ss_dssp EEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTTH
T ss_pred ccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecCCCCcHH
Confidence 2 2356788668999988884 6777777765 7889999999999988 9999999999965 4
Q ss_pred hHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCC-CCCcccccCCC
Q psy15244 354 TLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDP-ASIGIRVDSSC 431 (1427)
Q Consensus 354 ~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p-~~~gvr~d~~~ 431 (1427)
...+..+|+|+++.+++++.|. ++++ ....++++.++++++++.. .|..|. |..+..+ ..+++++.
T Consensus 294 ~~i~~~~g~d~~~~~~~~~~g~-l~~~------~~~~~~a~~~~~~~~g~~~--~~~~g~~i~~~~~~~~~~~~~~~--- 361 (424)
T 2yw2_A 294 QPILMRVKNDFLETLLNFYEGK-DVHI------KEDERYALDVVLASRGYPE--KPETGKIIHGLDYLKSMEDVVVF--- 361 (424)
T ss_dssp HHHHHTBCSCHHHHHHHHHTTC-CCCC------CBCSSEEEEEEEECTTTTS--SCCCCCBCBCHHHHHTSTTEEEE---
T ss_pred HHHHHHhCCCHHHHHHHHHcCC-CCcc------cccCCcEEEEEEecCCCCC--CCCCCCcCcCcccccCCCCeEEE---
Confidence 4556679999999999999997 4422 1123678999999875432 355565 4433321 13455442
Q ss_pred cCCCceec----ccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHH
Q psy15244 432 PYPGLQIS----PDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLP 480 (1427)
Q Consensus 432 ~~~G~~I~----~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~ 480 (1427)
..|..+. ......+++|+++|+|+++|++++++++++++++|. +++|.
T Consensus 362 -~~g~~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~r~di~ 415 (424)
T 2yw2_A 362 -HAGTKKEGNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCFEGMHYRKDIG 415 (424)
T ss_dssp -ESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBCTTCBCCSCTT
T ss_pred -EcceEeeCCEEEecCCcEEEEEEEeCCHHHHHHHHHHHHhcceeCCcEEcchhh
Confidence 2354432 112345889999999999999999999999999996 55554
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=385.33 Aligned_cols=376 Identities=16% Similarity=0.204 Sum_probs=291.1
Q ss_pred EEEEEcCCHHHHHHHHHH-HHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIANRSEVAIRVARAC-NEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIagrGeia~riiraa-~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
||||+|.|.....+++++ +++|++++++++... .....++ . + . +|.|.+.|+++|+++++|+|+|+
T Consensus 2 kililG~g~r~~a~a~~l~~~~g~~~v~~~~~~~---~~~~~~~-~--~------~-~~~d~~~l~~~~~~~~~d~v~~~ 68 (417)
T 2ip4_A 2 KVLVVGSGGREHALLWKAAQSPRVKRLYAAPGNA---GMEALAE-L--V------P-WNGDVEALADWALAEGIDLTLVG 68 (417)
T ss_dssp EEEEEESSHHHHHHHHHHHTCSSCCEEEEEECCT---TGGGTSE-E--C------C-CCSCHHHHHHHHHHHTCCEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEECCCc---chhhhcc-c--C------C-CccCHHHHHHHHHHcCCCEEEEC
Confidence 799999996566666766 458999887764322 1222333 2 2 1 47889999999999999999998
Q ss_pred CCcccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 138 YGFLSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 138 ~gflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
. |+. .+++.|++.|++++||++++++.++||..+|++|+++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 69 ~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~vvK 142 (417)
T 2ip4_A 69 P----EAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYR--VFREPLEALAYLEEVGVPVVVK 142 (417)
T ss_dssp S----SHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEE--EESSHHHHHHHHHHHCSSEEEE
T ss_pred C----chHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHcCCCEEEE
Confidence 5 443 477889999999999999999999999999999999999999986 6889999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccc--
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQ-- 292 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~q-- 292 (1427)
|..|+||+||+++++.+|+.++++.+. ...|+ ..+++|+||+ |+|++|.++.|+ +.++.+ ...++++
T Consensus 143 p~~~~gg~Gv~~v~~~~el~~~~~~~~---~~~~~-~~~lvEe~i~-g~E~sv~~~~~G--~~~~~~----~~~~~~~~~ 211 (417)
T 2ip4_A 143 DSGLAAGKGVTVAFDLHQAKQAVANIL---NRAEG-GEVVVEEYLE-GEEATVLALTDG--ETILPL----LPSQDHKRL 211 (417)
T ss_dssp CTTSCSSTTCEEESCHHHHHHHHHHHT---TSSSC-CCEEEEECCC-SCEEEEEEEESS--SCEEEC----CCBEECCEE
T ss_pred ECCCCCCCCEEEeCCHHHHHHHHHHHH---hhccC-CeEEEEECcc-CcEEEEEEEEeC--CEEEEc----chheechhh
Confidence 999999999999999999999987664 12343 7899999999 889999999864 433332 1122222
Q ss_pred ----------eEEEEccCCCCCHHHHHHH-HHHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhH
Q psy15244 293 ----------KVIQIAPAQDMSVSVRDAI-TETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTL 355 (1427)
Q Consensus 293 ----------k~ie~aPa~~l~~e~~~~l-~~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~v 355 (1427)
.....+|++ ++++.++++ .+.+.++++++ +|.|++++||+++++| +||||||||+++. +..
T Consensus 212 ~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~ 289 (417)
T 2ip4_A 212 LDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-PKVLEFNARFGDPEAQA 289 (417)
T ss_dssp ETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-EEEEEEESSCCTTHHHH
T ss_pred ccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-eEEEEEecCCCCcHHHH
Confidence 234568986 999988888 56677777765 7889999999999988 9999999999976 334
Q ss_pred HHHHhCCCHHHHHHHHHcCCCCccccccccCcc-cceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCcccccCCCcC
Q psy15244 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKIT-PQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIGIRVDSSCPY 433 (1427)
Q Consensus 356 te~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~-~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~gvr~d~~~~~ 433 (1427)
....+|+|+++.+++++.|. +++.. +. ..++++.+++.++++.. .|..|. |..+..+ +++++. .
T Consensus 290 i~~~~g~d~~~~~~~~~~g~-l~~~~-----~~~~~~~~~~~~l~~~~~~~--~~~~g~~i~~~~~~--~~v~~~----~ 355 (417)
T 2ip4_A 290 LLPLLENDLVELALRVAEGR-LAGTR-----LSWKEGAAACVVLAAPGYPE--SPRKGIPLHVPEPP--EGVLVF----H 355 (417)
T ss_dssp HTTTBCSCHHHHHHHHHHTC-GGGCC-----CCBCSSEEEEEEEECTTTTT--SCCCCCBCBCCCCC--TTEEEE----E
T ss_pred HHHHhCCCHHHHHHHHHcCC-CCcCC-----ccccCCcEEEEEEeCCCCCC--CCCCCCcccccCCC--CCeEEE----E
Confidence 45569999999999999997 43221 22 23678888888776432 466676 5555443 455443 2
Q ss_pred CCceec-----ccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 434 PGLQIS-----PDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 434 ~G~~I~-----~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
.|..+. ... +.+|+|+++|+|+++|++++++++++++++|. +++|..
T Consensus 356 ~g~~~~~~~~~~~~-~rv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~r~dig~ 409 (417)
T 2ip4_A 356 AGTRREGGRLVSAG-GRVLNVVGLGRDLKEALERAYAYIPQVGFPGAVYRRDIGR 409 (417)
T ss_dssp SSEEESSSSEEECS-SEEEEEEEEESSHHHHHHHHHHHGGGSBCTTCBCCSCTTH
T ss_pred CceEeeCCeEEecC-CcEEEEEEEcCCHHHHHHHHHHHHhcCccCCcEEccchhh
Confidence 455432 122 33899999999999999999999999999995 677764
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=395.00 Aligned_cols=394 Identities=14% Similarity=0.201 Sum_probs=292.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHH-HHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 55 KTMEKILIANRSEVAIRVARAC-NEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa-~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
.|++||||+|+|.....+++.+ +++|++++++....+ ++. ..++ ...+. .+|.|.+.|+++|+++++|+
T Consensus 22 ~m~~~IlIlG~g~r~~al~~~~a~~~g~~~v~~~~~~~--~~~-~~~~-~~~~~------~~~~d~~~l~~~~~~~~~d~ 91 (452)
T 2qk4_A 22 SMAARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNA--GTA-CSEK-ISNTA------ISISDHTALAQFCKEKKIEF 91 (452)
T ss_dssp CCSEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCG--GGS-BSSS-EEECC------CCSSCHHHHHHHHHHHTCCE
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCh--hhh-hhcc-ccccc------cCCCCHHHHHHHHHHcCCCE
Confidence 3567999999997666666654 668999877765433 222 3333 32332 25788999999999999999
Q ss_pred EEeCCCcccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc
Q psy15244 134 IHPGYGFLSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP 210 (1427)
Q Consensus 134 I~pg~gflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP 210 (1427)
|+|+. |+. .+++.|++.|++++||++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||
T Consensus 92 V~~~~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P 165 (452)
T 2qk4_A 92 VVVGP----EAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWK--AFTKPEEACSFILSADFP 165 (452)
T ss_dssp EEECS----SHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEE--EESSHHHHHHHHHHCSSC
T ss_pred EEECC----cHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhCCCC
Confidence 99975 443 577888999999999999999999999999999999999999987 688999999999999999
Q ss_pred -EEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeee-ecc-
Q psy15244 211 -VILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE-RDC- 285 (1427)
Q Consensus 211 -vVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e-rd~- 285 (1427)
+||||..|+||+||++|++.+|+.++++.+... ..|| +..++||+||+ |+|++|.++.|+. .++++.. ++.
T Consensus 166 ~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-G~E~sv~~~~dG~-~~~~~~~~~~~~ 241 (452)
T 2qk4_A 166 ALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQE--KAFGAAGETIVIEELLD-GEEVSCLCFTDGK-TVAPMPPAQDHK 241 (452)
T ss_dssp EEEEEESBC---CCEEECSSHHHHHHHHHHHTTC---------CCEEEEECCC-SEEEEEEEEECSS-CEEECCCBEEEE
T ss_pred eEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCC-CCeEEEEEEECCC-EEEEcceeeecc
Confidence 999999999999999999999999999876432 2244 36899999999 8999999998643 3544432 110
Q ss_pred cc-----ccccceEEEEccCCCCCHHHHHHHH-HHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-h
Q psy15244 286 SM-----QRRYQKVIQIAPAQDMSVSVRDAIT-ETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-H 353 (1427)
Q Consensus 286 s~-----qr~~qk~ie~aPa~~l~~e~~~~l~-~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ge-~ 353 (1427)
.. ..........+|++.++++..+++. +.+.+++++| +|.|++++||+++++| +||||||||+++. +
T Consensus 242 ~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~~~~~~ 320 (452)
T 2qk4_A 242 RLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG-PKVLEFNCRFGDPEC 320 (452)
T ss_dssp EEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTE-EEEEEEESSCCTTTH
T ss_pred cccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEeccCCCcHH
Confidence 00 0112234466888668999888886 5777777664 6789999999999988 9999999999976 4
Q ss_pred hHHHHHhCCCHHHHHHHHHcCCCCccccccccCcc-cceE-EEEEEeecCCCCCccCCCCC-ceeeeeCCCCCcccccCC
Q psy15244 354 TLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKIT-PQGC-AIQCHLRTEDPKRNFQPSTG-RLDVFTDPASIGIRVDSS 430 (1427)
Q Consensus 354 ~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~-~~g~-ai~~ri~aedp~~~f~P~~G-~i~~~~~p~~~gvr~d~~ 430 (1427)
......+|+|+++.+++++.|. +++.. +. ..++ ++.++++++++.. .|..| .|..+..+..+++++.
T Consensus 321 ~~i~~~~g~d~~~~~~~~~~g~-l~~~~-----~~~~~~~~a~~~~l~~~g~~~--~~~~g~~i~~l~~~~~~~v~~~-- 390 (452)
T 2qk4_A 321 QVILPLLKSDLYEVIQSTLDGL-LCTSL-----PVWLENHTALTVVMASKGYPG--DYTKGVEITGFPEAQALGLEVF-- 390 (452)
T ss_dssp HHHGGGBCSCHHHHHHHHHTTC-GGGGC-----CCBCTTCEEEEEEEECTTTTS--SCCCSCBCBCHHHHHHTTCEEE--
T ss_pred HHHHHHhCCCHHHHHHHHHcCC-CCccc-----ceecCCCcEEEEEEECCCCCC--CCCCCCcccCccccCCCCcEEE--
Confidence 3355668999999999999986 44321 22 2245 8889999876532 45666 4554433222455543
Q ss_pred CcCCCceec----ccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 431 CPYPGLQIS----PDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 431 ~~~~G~~I~----~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
..|..++ ......+++|+++|+|+++|+++++++++.++++|. +++|..
T Consensus 391 --~~G~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~r~di~~ 445 (452)
T 2qk4_A 391 --HAGTALKNGKVVTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKDIGF 445 (452)
T ss_dssp --ESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBCTTCBCCSCTTH
T ss_pred --ECcEEeeCCeEEecCCeEEEEEEecCCHHHHHHHHHHHHhhcccCCcEEchhcch
Confidence 2455542 112234799999999999999999999999999995 677753
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=376.90 Aligned_cols=361 Identities=16% Similarity=0.212 Sum_probs=286.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
+.++|+|+|+|.++.+++++|+++|+++++++.+++ ++...++|+.+.. +|.|.+.+.+++++ +|+|.
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~--~~~~~~ad~~~~~--------~~~d~~~l~~~~~~--~dvI~ 80 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN--SPCAQVADIEIVA--------SYDDLKAIQHLAEI--SDVVT 80 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT--CTTTTTCSEEEEC--------CTTCHHHHHHHHHT--CSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--CchHHhCCceEec--------CcCCHHHHHHHHHh--CCEee
Confidence 457999999999999999999999999999977665 5677889988764 47889999999986 78886
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
+++ ......+++.+++.|+ +||++++++.+.||..+|++++++|||+|++. .+.+.+++.++++++|||+||||
T Consensus 81 ~~~--e~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp 154 (389)
T 3q2o_A 81 YEF--ENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYR--LVQNQEQLTEAIAELSYPSVLKT 154 (389)
T ss_dssp ESC--CCCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEEE
T ss_pred ecc--ccccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhcCCCEEEEe
Confidence 554 4456678888988886 79999999999999999999999999999987 78999999999999999999999
Q ss_pred cCCCC-CcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE
Q psy15244 216 AFGGG-GRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV 294 (1427)
Q Consensus 216 ~~GgG-GrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ 294 (1427)
..|++ |+|++++++.+||.++++.+. +.++++|+||++++|++|.++.|.+|+++.+...++ .++.+...
T Consensus 155 ~~~~~~g~Gv~~v~~~~el~~~~~~~~--------~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~e~-~~~~g~~~ 225 (389)
T 3q2o_A 155 TTGGYDGKGQVVLRSEADVDEARKLAN--------AAECILEKWVPFEKEVSVIVIRSVSGETKVFPVAEN-IHVNNILH 225 (389)
T ss_dssp SSCCSSSCCEEEESSGGGHHHHHHHHH--------HSCEEEEECCCCSEEEEEEEEECTTCCEEECCCEEE-EEETTEEE
T ss_pred CCCCCCCCCeEEECCHHHHHHHHHhcC--------CCCEEEEecccCceEEEEEEEEcCCCCEEEecCeee-EEcCCceE
Confidence 99975 899999999999999887642 368999999997799999999998888776543322 33334445
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
....|+ .++++..+++.+.+.++++++|+.|++++||+++++|++||+|||||++++.+++..++|+|+++.+++.++|
T Consensus 226 ~~~~p~-~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~~~~~~~g~~~~~~~~r~~lg 304 (389)
T 3q2o_A 226 ESIVPA-RITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICN 304 (389)
T ss_dssp EEEESC-SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHHT
T ss_pred EEECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCCCCchhHHHHHcCCCHHHHHHHHHcC
Confidence 556777 5999999999999999999999999999999999889999999999999998888899999999999999999
Q ss_pred CCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeee-eCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 375 KSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVF-TDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 375 ~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~-~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
.+|+++.+. ..++...+..... .+....+ ..| +..+++. + .. ...+ ....|+|++.|
T Consensus 305 ~~l~~~~~~-------~~~~~~~~~g~~~-------~~~~~~~~~~p-~~~~~ly-g--k~--~~~~--~r~~G~v~~~~ 362 (389)
T 3q2o_A 305 LPLGETNLL-------KPVVMVNILGEHI-------EGVLRQVNRLT-GCYLHLY-G--KE--EAKA--QRKMGHVNILN 362 (389)
T ss_dssp CCCCCCCBC-------SCEEEEEEEHHHH-------HHHHHTGGGCT-TEEEEEC-C--CS--SCCT--TSEEEEEEEEC
T ss_pred CCCCCcccc-------CcEEEEEEecCch-------hhHHHHHHhCC-CCEEEEC-C--CC--CCCC--CCeeEEEEEEc
Confidence 998753321 1133333332110 0000111 111 1122222 1 00 0111 12289999999
Q ss_pred CCHHHHHHHHHHH
Q psy15244 454 ATYKSSCEKMRRA 466 (1427)
Q Consensus 454 ~~~~eA~~r~~ra 466 (1427)
+|.++|++++..+
T Consensus 363 ~~~~~a~~~a~~~ 375 (389)
T 3q2o_A 363 DNIEVALEKAKSL 375 (389)
T ss_dssp SSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998765
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=385.85 Aligned_cols=379 Identities=13% Similarity=0.091 Sum_probs=283.6
Q ss_pred CCCEEEEEcCCHHHHHHHHH-HHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIANRSEVAIRVARA-CNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riira-a~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+.+||||+|+|.....++.+ ++++| +++++.. ++....+|+. + |.+.|+++|++.++|+|
T Consensus 14 ~~~~vlviG~Ggr~~a~a~~~a~~~g-~v~~~~~-----np~~~~~d~~--i-----------d~~~l~~~~~~~~~d~V 74 (412)
T 1vkz_A 14 KAVRVHILGSGGREHAIGWAFAKQGY-EVHFYPG-----NAGTKRDGTN--H-----------PYEGEKTLKAIPEEDIV 74 (412)
T ss_dssp --CEEEEEECSHHHHHHHHHHHHTTC-EEEEEEC-----CTTGGGTSEE--C-----------CCCTHHHHHTSCSSCEE
T ss_pred ccCEEEEECCCHHHHHHHHHHHhCCC-CEEEECC-----Chhhhccccc--C-----------CHHHHHHHHHHcCCCEE
Confidence 35699999999555454544 57889 8877732 2344566654 2 35789999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
+|+. |++.++..++.++. ++||++++++.++||..+|++|+++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 75 ~~~~----E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~e~~~~~~~~g~PvvvK 147 (412)
T 1vkz_A 75 IPGS----EEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFE--VAETPEELREKIKKFSPPYVIK 147 (412)
T ss_dssp CCSS----GGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHTTSCSSEEEE
T ss_pred EECC----cHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEE--EECCHHHHHHHHHhcCCCEEEE
Confidence 9963 56555678888887 789999999999999999999999999999986 6899999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC-CcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccc---
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK-DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR--- 290 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~-~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~--- 290 (1427)
|..|+||+||++|++.+|+.++++.+.... ..|++ +.++|||||+ |+|++|+++.|++ .++.+. ..+..++.
T Consensus 148 p~~~~gg~Gv~~v~~~~el~~a~~~~~~~~-~~~g~~~~vlvEe~i~-G~E~sv~~~~dg~-~~~~~~-~~~~~~~~~~~ 223 (412)
T 1vkz_A 148 ADGLARGKGVLILDSKEETIEKGSKLIIGE-LIKGVKGPVVIDEFLA-GNELSAMAVVNGR-NFVILP-FVRDYKRLMDG 223 (412)
T ss_dssp ESSCCSSCCEEEESSHHHHHHHHHHHHHTS-SSTTCCSCEEEEECCC-SEEEEEEEEEETT-EEEECC-CCEECCEEETT
T ss_pred eCCCCCCCCEEEECCHHHHHHHHHHHHhhc-cccCCCCeEEEEECCc-CcEEEEEEEECCC-EEEEee-eeEeeeeccCC
Confidence 999999999999999999999998775431 03543 5899999999 8999999999754 333332 12222222
Q ss_pred -----cceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHHH
Q psy15244 291 -----YQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEEI 359 (1427)
Q Consensus 291 -----~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~~ 359 (1427)
...+.+++|++ ++++.++++.+.+.+++++| +|.|++++||+++++| +||||||||+++. +..++..
T Consensus 224 ~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~~~~~ 301 (412)
T 1vkz_A 224 DRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD-PYILEYNVRLGDPETEVIVTL 301 (412)
T ss_dssp TEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHHHHHHH
T ss_pred CCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC-cEEEEEecCCCCCcceeehhh
Confidence 12345778997 99999999999999999999 8899999999999988 9999999999965 6667777
Q ss_pred hCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceec
Q psy15244 360 TGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQIS 439 (1427)
Q Consensus 360 tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~ 439 (1427)
+|+|+.+.+++++.|. ++++. . ..+++ .|+++++++. .+.|..|.+..+..|+ .+++. +....+..+.
T Consensus 302 ~g~d~~~~~~~~~~g~-l~~~~-----~-~~~~a-~~~~l~~~~~-~~~~~~g~~i~l~~~~--~v~~~-g~~~~~~~~~ 369 (412)
T 1vkz_A 302 NPEGFVNAVLEGYRGG-KMEPV-----E-PRGFA-VDVVLAARGY-PDAPEKGKEITLPEEG--LIFFA-GVAEKDGKLV 369 (412)
T ss_dssp CHHHHHHHHHHHHHTS-CCCCC-----C-CCSEE-EEEEEECTTT-TTSCCCCCBCBCCSSC--CEEES-SEEEETTEEE
T ss_pred cCCCHHHHHHHHhcCC-Ccccc-----c-cCCeE-EEEEEecCCC-CCCCCCCCEeeeCCCC--cEEEC-cccccCCeEE
Confidence 9999999999999886 43221 1 12455 4677766532 2446677643343332 23322 1111122233
Q ss_pred ccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCH
Q psy15244 440 PDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNL 479 (1427)
Q Consensus 440 ~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni 479 (1427)
.. ++.+|+|+++|+|+++|++++++++++++++|+ +++|
T Consensus 370 ~~-~~~vg~v~~~g~~~~ea~~~~~~~~~~i~~~g~~~r~di 410 (412)
T 1vkz_A 370 TN-GGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDI 410 (412)
T ss_dssp EC-SSEEEEEEEEESSHHHHHHHHHHHHHHCBCTTCBCCTTC
T ss_pred eC-CCcEEEEEEeCCCHHHHHHHHHHHhcceeeCCCEecCCC
Confidence 33 456999999999999999999999999999996 5554
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=372.85 Aligned_cols=336 Identities=12% Similarity=0.145 Sum_probs=269.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
||||+|+|+|+.+++++.+|+++|+++ ++.+++ ++. +. .+ + ++|+|+|
T Consensus 1 Mk~igilGgGqlg~m~~~aa~~lG~~v--~~~~~~--a~~-------~~-----------~~------l----~~d~it~ 48 (355)
T 3eth_A 1 MKQVCVLGNGQLGRMLRQAGEPLGIAV--WPVGLD--AEP-------AA-----------VP------F----QQSVITA 48 (355)
T ss_dssp CCEEEEESCSHHHHHHHHHHGGGTCEE--EEECTT--CCG-------GG-----------CC------C----TTSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEE--ECCCCC--CCc-------eE-----------Ec------c----cCCEEEE
Confidence 578999999999999999999999998 343333 221 01 11 1 7999999
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
.+++++.. +++.+++.| ++||++++++.+.||..+|++++++|||+|++. .+.+.+++.++++++|||+||||+
T Consensus 49 e~e~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~--~v~~~~e~~~~~~~~G~P~VvKp~ 122 (355)
T 3eth_A 49 EIERWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRR 122 (355)
T ss_dssp SCSCCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEE--EECCGGGHHHHHHHHCSEEEEEES
T ss_pred CcCCcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEE--EECCHHHHHHHHHHcCCCEEEEec
Confidence 99998754 577888887 579999999999999999999999999999987 789999999999999999999999
Q ss_pred CC-CCCcCeEEecC--HHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccce
Q psy15244 217 FG-GGGRGMRMVAN--KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293 (1427)
Q Consensus 217 ~G-gGGrGV~iV~s--~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk 293 (1427)
.+ +||+|+++|++ .+||.+++ ++ .+++|+||++++|++|++++|.+|+++++. ..+.+++.+..
T Consensus 123 ~~G~~GkGv~~v~~~~~~el~~a~----------~~--~vivEe~I~~~~Eisv~v~~~~~G~~~~~p-~~e~~~~~g~~ 189 (355)
T 3eth_A 123 TGGYDGRGQWRLRANETEQLPAEC----------YG--ECIVEQGINFSGEVSLVGARGFDGSTVFYP-LTHNLHQDGIL 189 (355)
T ss_dssp SSCCTTTTEEEEETTCGGGSCGGG----------TT--TEEEEECCCCSEEEEEEEEECTTSCEEECC-CEEEEEETTEE
T ss_pred CCCCCCCeEEEEcCCCHHHHHHHh----------hC--CEEEEEccCCCcEEEEEEEEcCCCCEEEEC-CEEEEeeCCeE
Confidence 85 78999999999 99988743 33 699999999889999999999888877542 22345555554
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.....|+ .++++.++++.+.+.+++++|||.|+++|||++++ +++||+|||||+++++++|...+++|+++++++.++
T Consensus 190 ~~~~~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~-~~~~v~EinpR~~~sg~~t~~~~~~s~fe~~~ra~~ 267 (355)
T 3eth_A 190 RTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAMECFVTP-QGLLINELAPRVHNSGHWTQNGASISQFELHLRAIT 267 (355)
T ss_dssp EEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHHHSSSCHHHHHHHHHT
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEeeCCCCCCccEEeeeecCCHHHHHHHHHc
Confidence 4445555 69999999999999999999999999999999996 469999999999999999999999999999999999
Q ss_pred CCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEc
Q psy15244 374 GKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHT 453 (1427)
Q Consensus 374 G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G 453 (1427)
|.|++++. ..+.++.+.|..++. .-.....|+ ..+++.+ ....+ ...+|+|++.|
T Consensus 268 G~pl~~~~-------~~~~~~m~nilg~~~---------~~~~~~~p~-~~~~~yg------k~~r~--~rkmGhv~~~~ 322 (355)
T 3eth_A 268 DLPLPQPV-------VNNPSVMINLIGSDV---------NYDWLKLPL-VHLHWYD------KEVRP--GRKVGHLNLTD 322 (355)
T ss_dssp TCCCCCCC-------CCSCEEEEEEESCCC---------CGGGGGSTT-CEEEECC------CCCCT--TCEEEEEEEEC
T ss_pred CCCCCCcc-------ccCceEEEEEecchH---------HHHHHhCCC-CEEEEcC------CCCCC--CCeeEEEEEEc
Confidence 99986432 233366677776541 111112222 2344441 12222 34499999999
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy15244 454 ATYKSSCEKMRRALEET 470 (1427)
Q Consensus 454 ~~~~eA~~r~~raL~e~ 470 (1427)
.|.+++++++.++.+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~ 339 (355)
T 3eth_A 323 SDTSRLTATLEALIPLL 339 (355)
T ss_dssp SCHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998765
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=372.63 Aligned_cols=361 Identities=18% Similarity=0.269 Sum_probs=283.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 55 KTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 55 ~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.+.++|||+|+|+++.+++++|+++|+++++++.+++ ++....||+.+.. +|.|.+.+.+++++ +|+|
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~--~p~~~~ad~~~~~--------~~~d~~~l~~~~~~--~dvi 77 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED--CPCRYVAHEFIQA--------KYDDEKALNQLGQK--CDVI 77 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT--CTTGGGSSEEEEC--------CTTCHHHHHHHHHH--CSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--ChhhhhCCEEEEC--------CCCCHHHHHHHHHh--CCcc
Confidence 3468999999999999999999999999999977666 6777889998764 37889999999987 7888
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
.++++. -....+..+++.+ .++|++++++.+.||..+|++++++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 78 ~~~~E~--~~~~~l~~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~g~P~vvK 151 (377)
T 3orq_A 78 TYEFEN--ISAQQLKLLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFI--SVKESTDIDKAIETLGYPFIVK 151 (377)
T ss_dssp EESSTT--SCHHHHHHHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEE--EECSSTHHHHHHHHTCSSEEEE
T ss_pred eecccc--cCHHHHHHHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHHcCCCEEEE
Confidence 765532 2234455555554 467999999999999999999999999999987 6889999999999999999999
Q ss_pred ecCCC-CCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccce
Q psy15244 215 AAFGG-GGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQK 293 (1427)
Q Consensus 215 P~~Gg-GGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk 293 (1427)
|..|+ ||+|+++|++.+|+.++++.+. +..+++|+||++.+|++|.++.+.+|++..+...+. .++.+..
T Consensus 152 p~~gg~~g~Gv~~v~~~~el~~a~~~~~--------~~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~e~-~~~~g~~ 222 (377)
T 3orq_A 152 TRFGGYDGKGQVLINNEKDLQEGFKLIE--------TSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQEN-EHRNQIL 222 (377)
T ss_dssp ESSSCCTTTTEEEECSTTSHHHHHHHHT--------TSCEEEEECCCEEEEEEEEEEECGGGCEEECCCEEE-EEETTEE
T ss_pred eCCCCCCCCCeEEECCHHHHHHHHHhcC--------CCcEEEEccCCCCEEEEEEEEEeCCCCEEEECCEeE-EEECCEE
Confidence 99998 9999999999999999887642 378999999996699999999877788766533222 3333444
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 294 VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 294 ~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.....|+ .+++ .+++.+.+.+++++|||.|++++||+++++|++||+|||||++++..+|...+++|+++.+++.++
T Consensus 223 ~~~~~Pa-~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v~EinpR~~~sg~~t~~~~~~s~f~~~~ra~~ 299 (377)
T 3orq_A 223 FKTIVPA-RIDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVT 299 (377)
T ss_dssp EEEEESC-SSCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHT
T ss_pred EEEECCC-CCCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEeeCCcCCCCcEeehhcCCCHHHHHHHHHc
Confidence 5567788 4666 789999999999999999999999999988999999999999998778878899999999999999
Q ss_pred CCCCcc-ccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCC-CcCCCceecccCccceEEEEE
Q psy15244 374 GKSLTE-LGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSS-CPYPGLQISPDYDSLLAKIIV 451 (1427)
Q Consensus 374 G~~l~~-l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~-~~~~G~~I~~~~Ds~l~kvi~ 451 (1427)
|.++++ +.+ ...++...+..++. .+.-..+..-.+..+++.+. ...+| ..+|+|++
T Consensus 300 G~pl~~~~~~-------~~~~~m~n~lg~~~-------~~~~~~~~~~~~~~~~~ygk~~~~~~--------rkmGhv~~ 357 (377)
T 3orq_A 300 GQSLPNSIEL-------LKPAVMMNLLGKDL-------DLLENEFNEHPEWHLHIYGKSERKDS--------RKMGHMTV 357 (377)
T ss_dssp TCCCCSCCCB-------SSCEEEEEEEHHHH-------HHHGGGGGGCGGGCEEECCCSSCCTT--------SEEEEEEE
T ss_pred CCCCCccccc-------cccEEEEEEeCccc-------hhHHHHHhhCCCCEEEECCCCCCCCC--------CeeEEEEE
Confidence 999864 321 22355555654321 01111111111223444411 11223 34899999
Q ss_pred EcCCHHHHHHHHHHHh
Q psy15244 452 HTATYKSSCEKMRRAL 467 (1427)
Q Consensus 452 ~G~~~~eA~~r~~raL 467 (1427)
.|+|.+++++++..-+
T Consensus 358 ~~~~~~~~~~~~~~~~ 373 (377)
T 3orq_A 358 LTNDVNQTEQDMYAKF 373 (377)
T ss_dssp ECSCHHHHHHHHHHHT
T ss_pred EcCCHHHHHHHhHHhh
Confidence 9999999999887644
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=369.34 Aligned_cols=399 Identities=15% Similarity=0.162 Sum_probs=288.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCC-EEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGI-KSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi-~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+||||+|.|.....+++++++.+. ..+.+.. .+ .-....++ ...+. -++.|.+.|+++|+++++|+|+
T Consensus 3 ~mkvlviG~ggre~ala~~l~~s~~v~~v~~~p-gn--~g~~~~~~-~~~~~------~~~~d~~~l~~~a~~~~id~vv 72 (431)
T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPLADKIYVAP-GN--AGTALEPT-LENVD------IAATDIAGLLAFAQSHDIGLTI 72 (431)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEE-CC--HHHHHCTT-CEECC------CCTTCHHHHHHHHHHTTEEEEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEEC-CC--HHHhhhcc-cceec------CCcCCHHHHHHHHHHhCcCEEE
Confidence 4699999999777789999988864 3333332 11 11112222 11121 2357899999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|+++... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++. .+++.+++.++++++|||+||||
T Consensus 73 ~g~e~~l-~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~--~~~~~~ea~~~~~~~g~PvVvKp 149 (431)
T 3mjf_A 73 VGPEAPL-VIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQ--NFTDVEAALAYVRQKGAPIVIKA 149 (431)
T ss_dssp ECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEE--EESCHHHHHHHHHHHCSSEEEEE
T ss_pred ECCchHH-HHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeE--eeCCHHHHHHHHHHcCCeEEEEE
Confidence 9864211 12478899999999999999999999999999999999999999986 78999999999999999999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeeee-ccc-c----
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER-DCS-M---- 287 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~er-d~s-~---- 287 (1427)
..|+||+||+++++.+|+.++++.+... ..|+ +..++|||||+ |+|++|.++.|+. +++.+... +.. .
T Consensus 150 ~~~~gg~GV~iv~~~~el~~a~~~~~~~--~~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~ 225 (431)
T 3mjf_A 150 DGLAAGKGVIVAMTQEEAETAVNDMLAG--NAFGDAGHRIVVEEFLD-GEEASFIVMVDGE-NVLPMATSQDHKRVGDGD 225 (431)
T ss_dssp SSSCTTCSEEEECSHHHHHHHHHHHHTT--HHHHCCCCCEEEEECCC-SEEEEEEEEEESS-CEEECCCBEECCEEETTT
T ss_pred CCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccccCCCCeEEEEEeeC-CcEEEEEEEEcCC-EEEEEEeeEeceecccCC
Confidence 9999999999999999999999887632 2343 46899999999 7999999999875 66665321 100 0
Q ss_pred -ccccceEEEEccCCCCCHHHHHHHHHH----HHHHHHHcCC--CCeEEEEEEEcCCCcEEEEeeCCCCCC-chhHHHHH
Q psy15244 288 -QRRYQKVIQIAPAQDMSVSVRDAITET----SVRLAKSLGY--SNAGTVEFLLDKDDNFYFIEVNPRLQV-EHTLSEEI 359 (1427)
Q Consensus 288 -qr~~qk~ie~aPa~~l~~e~~~~l~~~----a~~l~~alg~--~G~~~VEflvd~dG~~yfIEINpRl~g-e~~vte~~ 359 (1427)
..+...+...+|++.++++..+++.+. +.++++++|+ +|++++||+++++|++||||+|||++. +..++...
T Consensus 226 ~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g~~~viEiN~R~G~~~~~~i~~~ 305 (431)
T 3mjf_A 226 TGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLR 305 (431)
T ss_dssp EEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTSCEEEEEECGGGSTTTHHHHHHH
T ss_pred CCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHH
Confidence 011122355789977999999988886 6777777665 799999999999899999999999973 24555688
Q ss_pred hCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCc-eeeeeCCCCCccccc-CCC-cCCC-
Q psy15244 360 TGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGR-LDVFTDPASIGIRVD-SSC-PYPG- 435 (1427)
Q Consensus 360 tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~-i~~~~~p~~~gvr~d-~~~-~~~G- 435 (1427)
+|+|+++.+++++.|.. +++++.+. .++++...+ +..... -.+..|. |..+.....+++.+. .+. ...|
T Consensus 306 ~g~dl~~~~~~~~~G~l-~~~~~~~~----~~~a~~vv~-a~~gyp-~~~~~g~~i~~~~~~~~~~~~~~~ag~~~~~~~ 378 (431)
T 3mjf_A 306 MRSDLVELCLAGTQGKL-NEKTSDWD----ERPSLGVVL-AAGGYP-ADYRQGDVIHGLPQQEVKDGKVFHAGTKLNGNH 378 (431)
T ss_dssp BCSCHHHHHHHHHTTCG-GGCCCCBC----SSCEEEEEE-EETTTT-SCCCCCCBCBCCCSSCBTTEEEEESSEEECTTS
T ss_pred HCCCHHHHHHHHHcCCC-CCCCcccc----CCcEEEEEe-cCCCcC-ccCCCCCEeeCCccccCCCcEEEEeeeEecCCC
Confidence 99999999999999983 33333332 233433333 222111 1223332 332322111243222 111 1223
Q ss_pred ceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 436 LQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 436 ~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
..++ .++.++.|++.|+|.++|+++++++++.++++|. +++|.+
T Consensus 379 ~~~~--~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~~~~~~r~dig~ 424 (431)
T 3mjf_A 379 EVVT--NGGRVLCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKDIGY 424 (431)
T ss_dssp CEEE--CSSEEEEEEEECSSHHHHHHHHHHHHTTCBCTTEECCSCTTH
T ss_pred EEEe--cCCeEEEEEEecCCHHHHHHHHHHHhccCCCCCceeehhhHH
Confidence 3332 2456899999999999999999999999999995 778865
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=371.16 Aligned_cols=393 Identities=11% Similarity=0.138 Sum_probs=292.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcC-CEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMG-IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elG-i~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+..||||+|.|.....+++++++.+ +..+.+.. . .+....+++.+.+ ++.|.+.|+++|+++++|+|
T Consensus 20 ~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~p--g--n~g~~~~~~~~~i--------~~~d~~~l~~~a~~~~id~v 87 (442)
T 3lp8_A 20 GSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAP--G--REGMSGLADIIDI--------DINSTIEVIQVCKKEKIELV 87 (442)
T ss_dssp CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEE--C--CGGGTTTSEECCC--------CTTCHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCCEEEEEC--C--ChHHhhccceeec--------CcCCHHHHHHHHHHhCCCEE
Confidence 3569999999977778999998874 45555542 2 2233344554332 46889999999999999999
Q ss_pred EeCCCcccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE
Q psy15244 135 HPGYGFLSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV 211 (1427)
Q Consensus 135 ~pg~gflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv 211 (1427)
+|+. |++ .+++.+++.|++++||+++++++++||..+|++|+++|||+|++. .+.+.+++.++++++|||+
T Consensus 88 v~g~----E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~--~~~~~~ea~~~~~~~g~Pv 161 (442)
T 3lp8_A 88 VIGP----ETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYG--YFVDTNSAYKFIDKHKLPL 161 (442)
T ss_dssp EECS----HHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEE--EESSHHHHHHHHHHSCSSE
T ss_pred EECC----cHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEE--EECCHHHHHHHHHHcCCcE
Confidence 9975 444 478889999999999999999999999999999999999999986 7899999999999999999
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeee-ecccc-
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE-RDCSM- 287 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e-rd~s~- 287 (1427)
||||..|+||+||+++++.+|+.++++.+... ..|+ +..++|||||+ |+|+++.++.|+. +++.+.. ++...
T Consensus 162 VvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~--~~~g~~~~~vlvEe~i~-G~E~sv~~~~dg~-~~~~~~~~~~~~~~ 237 (442)
T 3lp8_A 162 VVKADGLAQGKGTVICHTHEEAYNAVDAMLVH--HKFGEAGCAIIIEEFLE-GKEISFFTLVDGS-NPVILGVAQDYKTI 237 (442)
T ss_dssp EEEESSCCTTTSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCC-SEEEEEEEEEESS-CEEEEEEEEECCEE
T ss_pred EEeECCCCCCCeEEEeCCHHHHHHHHHHHHhh--cccCCCCCeEEEEEeec-CcEEEEEEEECCC-eEEEeEEeEeeeec
Confidence 99999999999999999999999999877631 2344 36899999999 8999999999864 4544322 11110
Q ss_pred -----ccccceEEEEccCCCCCHHHHHHHHHH----HHHHHHHcCC--CCeEEEEEEEcCCCcEEEEeeCCCCCC-chhH
Q psy15244 288 -----QRRYQKVIQIAPAQDMSVSVRDAITET----SVRLAKSLGY--SNAGTVEFLLDKDDNFYFIEVNPRLQV-EHTL 355 (1427)
Q Consensus 288 -----qr~~qk~ie~aPa~~l~~e~~~~l~~~----a~~l~~alg~--~G~~~VEflvd~dG~~yfIEINpRl~g-e~~v 355 (1427)
..+...+...+|++.++++..+++.+. +.++++++|+ .|++++||+++++| +||||+|||+++ +++.
T Consensus 238 ~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~ 316 (442)
T 3lp8_A 238 GDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE-PKLLEYNVRFGDPETQS 316 (442)
T ss_dssp EGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHHH
T ss_pred ccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eEEEEEecCCCCCchhh
Confidence 111223467789977999999999887 8888899887 79999999999988 999999999994 5778
Q ss_pred HHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCC-ceeeeeC-CCCCcccccC-CC-
Q psy15244 356 SEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTG-RLDVFTD-PASIGIRVDS-SC- 431 (1427)
Q Consensus 356 te~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G-~i~~~~~-p~~~gvr~d~-~~- 431 (1427)
+...+|.|+++.+++++.|.. +++.+.+. .++++ |.+.+..... ..+..| .|+.+.. ...+++.+.. +.
T Consensus 317 ~~~~~~~dl~~~~~~~~~G~l-~~~~~~~~----~~~a~-~vv~a~~gyp-~~~~~g~~i~g~~~~~~~~~~~~~~ag~~ 389 (442)
T 3lp8_A 317 ILPRLNSDFLKLLSLTAKGKL-GNESVELS----KKAAL-CVVVASRGYP-GEYKKNSIINGIENIEKLPNVQLLHAGTR 389 (442)
T ss_dssp HGGGBCSCHHHHHHHHHHTCC-SSCCCCBC----SCEEE-EEEEEETTTT-SSCCSSCEEBSHHHHHTCSSEEEEESSEE
T ss_pred hHHHhCCCHHHHHHHHHcCCC-CCCCceec----cCcEE-EEEEccCCCC-CCCCCCCEeeCCcccccCCCcEEEEeeee
Confidence 888899999999999999973 33222222 23343 3344433211 122333 2332221 1123332221 11
Q ss_pred cCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHH
Q psy15244 432 PYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLP 480 (1427)
Q Consensus 432 ~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~ 480 (1427)
...|..+ . .+..++.|++.|+|.++|+++++++++.++++|. +++|.
T Consensus 390 ~~~~~~~-~-~ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~~~~~~r~dig 438 (442)
T 3lp8_A 390 REGNNWV-S-DSGRVINVVAQGENLASAKHQAYAALDLLDWPDGIYRYDIG 438 (442)
T ss_dssp EETTEEE-E-CSSEEEEEEEEESSHHHHHHHHHHHHTTCBCTTEECCSCTT
T ss_pred ccCCeEE-e-cCCeEEEEEEecCCHHHHHHHHHHHhcccCCCCCcccCccC
Confidence 1122222 2 2455899999999999999999999999999995 66664
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=366.77 Aligned_cols=386 Identities=16% Similarity=0.205 Sum_probs=278.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHH-HHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIANRSEVAIRVARAC-NEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa-~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
+.+||||+|.|.....+++++ +++|++++++++... .....++ . +. .++.|.+.|+++|+++++|+|
T Consensus 20 ~~~~iliiG~g~r~~a~a~~~~~~~g~~~v~~~~~~~---~~~~~~~-~--~~------~~~~d~~~l~~~~~~~~~d~v 87 (451)
T 2yrx_A 20 SHMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNP---GIADVAE-L--VH------IDELDIEALVQFAKQQAIDLT 87 (451)
T ss_dssp SSEEEEEEECSHHHHHHHHHHHTCTTEEEEEEEECCT---TGGGTSE-E--CC------CCTTCHHHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCh---hhhhhCc-e--ec------cCCCCHHHHHHHHHHcCCCEE
Confidence 356999999996555565555 568999887765321 1223344 2 21 236789999999999999999
Q ss_pred EeCCCcccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE
Q psy15244 135 HPGYGFLSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV 211 (1427)
Q Consensus 135 ~pg~gflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv 211 (1427)
+|+. |+. .+++.+++.|++++||++++++.++||..+|++|+++|||+|++. .+.+.+++.+++++++||+
T Consensus 88 i~~~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~Pv 161 (451)
T 2yrx_A 88 IVGP----EAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHA--AFTSYEEAKAYIEQKGAPI 161 (451)
T ss_dssp EECS----HHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EESCHHHHHHHHHHHCSSE
T ss_pred EECC----chHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHhcCCcE
Confidence 9975 443 467888999999999999999999999999999999999999986 6889999999999999999
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeee--eccc-
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE--RDCS- 286 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e--rd~s- 286 (1427)
||||..|+||+||++|++.+|+.++++.+... ..|+ +..++||+||+ |+|++|.++.|+ +.+.... ++..
T Consensus 162 VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-G~E~sv~~~~dG--~~~~~~~~~~~~~~ 236 (451)
T 2yrx_A 162 VIKADGLAAGKGVTVAQTVEEALAAAKAALVD--GQFGTAGSQVVIEEYLE-GEEFSFMAFVNG--EKVYPLAIAQDHKR 236 (451)
T ss_dssp EEEECC----CCEEEESSHHHHHHHHHHHHHH--SCCBTTBCCEEEEECCC-SEEEEEEEEEET--TEEEECCCBEECCE
T ss_pred EEEeCCCCCCCcEEEECCHHHHHHHHHHHHhc--cccCCCCCeEEEEECCc-CcEEEEEEEEcC--CEEEEeeeEEeccc
Confidence 99999999999999999999999999877552 2354 37899999999 899999999874 4433321 1100
Q ss_pred c-----ccccceEEEEccCCCCCHHHHHHH-HHHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hh
Q psy15244 287 M-----QRRYQKVIQIAPAQDMSVSVRDAI-TETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HT 354 (1427)
Q Consensus 287 ~-----qr~~qk~ie~aPa~~l~~e~~~~l-~~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~ 354 (1427)
. ..+........|++.++++..+++ .+.+.++++++ +|.|++++||+++++| +||||||||+++. +.
T Consensus 237 ~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~ 315 (451)
T 2yrx_A 237 AYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG-PKVIEFNARFGDPEAQ 315 (451)
T ss_dssp EETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHH
T ss_pred cccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecCCCCcHHH
Confidence 0 001122345678866899988888 66677777655 6789999999999988 9999999999976 44
Q ss_pred HHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCC-CCCccCCCCCc-eeeeeCCCCCcccccCCCc
Q psy15244 355 LSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTED-PKRNFQPSTGR-LDVFTDPASIGIRVDSSCP 432 (1427)
Q Consensus 355 vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aed-p~~~f~P~~G~-i~~~~~p~~~gvr~d~~~~ 432 (1427)
..+..+|+|+++.+++++.|... ++ .. ..++++..++.+.. | ..|..|. |..+.... +++++.
T Consensus 316 ~i~~~~g~d~~~~~~~~~~g~~~-~~--~~----~~~~~~~~~l~~~g~p---~~~~~g~~i~~~~~~~-~~~~v~---- 380 (451)
T 2yrx_A 316 VVLPRLKTDLVEAVLAVMDGKEL-EL--EW----TDEAVLGVVLAAKGYP---GAYERGAEIRGLDRIS-PDALLF---- 380 (451)
T ss_dssp HHGGGBCSCHHHHHHHHHTTCCC-CC--CB----CSSEEEEEEEEETTTT---SSCCCCCEEBCGGGSC-TTSEEE----
T ss_pred HHHHHcCCCHHHHHHHHhcCCCC-Cc--cc----cCCceEEEEEecCCcC---CCCCCCCcCcCccccC-CCCEEE----
Confidence 45667999999999999999743 22 11 12345555554321 1 0122332 22221111 343332
Q ss_pred CCCceec----ccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHH
Q psy15244 433 YPGLQIS----PDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLP 480 (1427)
Q Consensus 433 ~~G~~I~----~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~ 480 (1427)
..|..+. ......+|+|++.|+|+++|+++++++++.++++|. +++|.
T Consensus 381 ~~G~~~~~~~~~~~~~rvg~v~~~g~~~~ea~~~~~~~~~~i~~~~~~~r~dig 434 (451)
T 2yrx_A 381 HAGTKREGGAWYTNGGRVLLLAAKGETLAKAKEKAYEQLAAIDCDGLFYRRDIG 434 (451)
T ss_dssp ESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBCTTEECCSCTT
T ss_pred eCcccccCCeEEcCCCeEEEEEEEeCCHHHHHHHHHHHhhccccCCeEechhhh
Confidence 1233321 111355999999999999999999999999999985 66665
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=366.76 Aligned_cols=388 Identities=17% Similarity=0.231 Sum_probs=283.1
Q ss_pred EEEEEcCCHHHHHHHHHH-HHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIANRSEVAIRVARAC-NEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIagrGeia~riiraa-~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
||||+|+|.....+++++ +++|++++++++. + ......+| . +. .++.|.+.|+++|+++++|+|+|+
T Consensus 2 ~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~-~--~~~~~~~~-~--~~------~~~~d~~~l~~~~~~~~~d~v~~~ 69 (422)
T 2xcl_A 2 NVLIIGKGGREHTLAWKAAQSSLVENVFAAPG-N--DGMAASAQ-L--VN------IEESDHAGLVSFAKQNQVGLTIVG 69 (422)
T ss_dssp EEEEEECSHHHHHHHHHHTTCTTCSEEEEEEC-C--GGGTTTCE-E--CC------CCTTCHHHHHHHHHHTTEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEeCC-C--hhhhhhcc-c--cc------cCcCCHHHHHHHHHHcCCCEEEEC
Confidence 799999996666666665 4579998888654 2 22334555 2 21 246789999999999999999997
Q ss_pred CCcccccH---HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEe
Q psy15244 138 YGFLSERE---DFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILK 214 (1427)
Q Consensus 138 ~gflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVK 214 (1427)
. |+. .+++.+++.|++++||++++++.++||..+|++++++|||+|++. .+.+.+++.++++++|||+|||
T Consensus 70 ~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~vvK 143 (422)
T 2xcl_A 70 P----EVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYE--TFTSFDEAKAYVQEKGAPIVIK 143 (422)
T ss_dssp S----HHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEE--EESCHHHHHHHHHHHCSSEEEE
T ss_pred C----cHHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHhcCCCEEEE
Confidence 5 443 567888999999999999999999999999999999999999986 6889999999999999999999
Q ss_pred ecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC--CCcEEEEeeccCCceEEEEEEecccccEEEeee-ec----ccc
Q psy15244 215 AAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG--KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE-RD----CSM 287 (1427)
Q Consensus 215 P~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg--~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e-rd----~s~ 287 (1427)
|..|+||+||+++++.+|+.++++.+... ..|+ +..+++|+||+ |+|++|.++.|+. .+..+.. ++ +..
T Consensus 144 p~~~~~g~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~-g~E~sv~~~~dG~-~~~~~~~~~~~~~~~~~ 219 (422)
T 2xcl_A 144 ADGLAAGKGVTVAMTEEEAIACLHDFLED--EKFGDASASVVIEEYLS-GEEFSLMAFVKGE-KVYPMVIAQDHKRAFDG 219 (422)
T ss_dssp ESSCGGGTCEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCC-SEEEEEEEEEETT-EEEECCCBEEEEEEEGG
T ss_pred eCCCCCCCcEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCc-CcEEEEEEEEcCC-EEEecceeeeeehhcCC
Confidence 99999999999999999999999876541 1243 36899999999 8999999998753 2222211 11 000
Q ss_pred --ccccceEEEEccCCCCCHHHHHHHHH-HHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-hhHHHH
Q psy15244 288 --QRRYQKVIQIAPAQDMSVSVRDAITE-TSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-HTLSEE 358 (1427)
Q Consensus 288 --qr~~qk~ie~aPa~~l~~e~~~~l~~-~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ge-~~vte~ 358 (1427)
..+........|++.++++..+++.+ .+.++++++ +|.|++++||+++++| +||||+|||+++. +...+.
T Consensus 220 ~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g-~~viEiN~R~g~~~~~~i~~ 298 (422)
T 2xcl_A 220 DKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG-SKVIEFNARFGDPETQVVLP 298 (422)
T ss_dssp GEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTTHHHHGG
T ss_pred CCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC-cEEEEEecCCCCcHHHHHHH
Confidence 01122334667886689998888854 677777665 6789999999999988 9999999999976 444566
Q ss_pred HhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCC-CCCccCCCCCc-eeeeeCCCCCccccc-CCCcCCC
Q psy15244 359 ITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTED-PKRNFQPSTGR-LDVFTDPASIGIRVD-SSCPYPG 435 (1427)
Q Consensus 359 ~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aed-p~~~f~P~~G~-i~~~~~p~~~gvr~d-~~~~~~G 435 (1427)
.+|+|+.+.+++++.|.. +++ .+ ..++++.+++.+.. |. .|..|. |..+.... +++++. .+....+
T Consensus 299 ~~g~d~~~~~~~~~~g~l-~~~--~~----~~~~~~~~~~~~~g~~~---~~~~g~~i~~~~~~~-~~~~~~~~g~~~~~ 367 (422)
T 2xcl_A 299 RMESDLVQVLLDLLDDKE-VDL--RW----KDTAAVSVVLASEGYPE---SYAKGTPIGSLAAET-EQVVVFHAGTKAEG 367 (422)
T ss_dssp GBCSCHHHHHHHHHTTCC-CCC--CB----CSCEEEEEEEEETTTTS---CCCSCCBCCCCCCCS-SSEEEEESSEEECS
T ss_pred hcCCCHHHHHHHHHcCCc-Ccc--cc----cCCceEEEEEECCCCCC---CCCCCCcccCcccCC-CCcEEEEeeeEeeC
Confidence 799999999999999863 322 11 12345555555431 11 112221 22121111 455442 1110011
Q ss_pred ceecccCccceEEEEEEcCCHHHHHHHHHHHhhccEEccc--ccCHHH
Q psy15244 436 LQISPDYDSLLAKIIVHTATYKSSCEKMRRALEETQVSGV--TTNLPF 481 (1427)
Q Consensus 436 ~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e~~I~Gv--~tni~~ 481 (1427)
..+...++. +++|+++|+|+++|+++++++++.++++|. +++|..
T Consensus 368 ~~~~~~~~r-~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~r~di~~ 414 (422)
T 2xcl_A 368 GEFVTNGGR-VANVTAFDETFEAARDRVYKAVDEIFKPGLFFRKDIGA 414 (422)
T ss_dssp SSEEECSSE-EEEEEEEESSHHHHHHHHHHHHHHHCCTTEECCSCTTH
T ss_pred CEEEeCCCc-eEEEEEEeCCHHHHHHHHHHHHhcceeCCcEecchhhH
Confidence 223334455 889999999999999999999999999994 777763
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=400.23 Aligned_cols=366 Identities=20% Similarity=0.344 Sum_probs=287.1
Q ss_pred CCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 56 TMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 56 ~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
+.+||||+|+|++ +.+++++|+++|+++++++++++..+.+...+|+.|..+ .+.+.+++
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p---------~~~e~v~~ 628 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEP---------VTLEDVLE 628 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCC---------CSHHHHHH
T ss_pred cCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEEEEecCCcccccccccccEEEecc---------chhhhhhh
Confidence 5679999999985 457899999999999999999988777788899887532 56899999
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
+++..++|+|+|.+|... ...+++.|++.|++++||+++++..+.||..++++++++|||+|++. .+.+.+++.+++
T Consensus 629 i~~~e~~d~Vi~~~g~~~-~~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~--~~~s~eea~~~~ 705 (1073)
T 1a9x_A 629 IVRIEKPKGVIVQYGGQT-PLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANA--TVTAIEMAVEKA 705 (1073)
T ss_dssp HHHHHCCSEEECSSSTHH-HHTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEE--ECCSHHHHHHHH
T ss_pred hhhhcCcceEEeecCCch-HHHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCce--EECCHHHHHHHH
Confidence 999999999999887522 12578899999999999999999999999999999999999999987 789999999999
Q ss_pred HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEE-eeee
Q psy15244 205 DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVH-LYER 283 (1427)
Q Consensus 205 ~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~-l~er 283 (1427)
+++|||+||||..|+||+||++|++.+||.++++.+.. .+++.+++||+||++.+|++|++++|+.+.++. +.+.
T Consensus 706 ~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~----~~~~~~vlvEefI~g~~E~~V~~l~d~~~v~~~~i~e~ 781 (1073)
T 1a9x_A 706 KEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVS----VSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEH 781 (1073)
T ss_dssp HHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------EEEBCCTTCEEEEEEEEECSSCEEEEEEEEE
T ss_pred HHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHh----hCCCCcEEEEEccCCCcEEEEEEEEECCeEEEEeeEEE
Confidence 99999999999999999999999999999999876542 234578999999996669999999987543322 2221
Q ss_pred ccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCC
Q psy15244 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGID 363 (1427)
Q Consensus 284 d~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiD 363 (1427)
-.....+........|++.++++..+++.+.+.++++++|++|.+++||+++ +|++||||||||+++++++++.++|+|
T Consensus 782 ~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~-~~~~~viEvNpR~~~~~~~~~~~tGi~ 860 (1073)
T 1a9x_A 782 IEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK-NNEVYLIEVNPRAARTVPFVSKATGVP 860 (1073)
T ss_dssp SSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCEEEEEEECSCCTTHHHHHHHHSCC
T ss_pred EeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CCeEEEEEEECCCccHHHHHHHHHCcC
Confidence 1111112233456678778999999999999999999999999999999997 577999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCc
Q psy15244 364 VVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYD 443 (1427)
Q Consensus 364 Lv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~D 443 (1427)
+++.++++++|.+++++++.+... +.+++++++++. |..-+|. | ...| |...
T Consensus 861 l~~~~~~~~~G~~l~~~~~~~~~~-~~~~~vk~~~~~------f~~~~~~--------------d---~~lg----~~~~ 912 (1073)
T 1a9x_A 861 LAKVAARVMAGKSLAEQGVTKEVI-PPYYSVKEVVLP------FNKFPGV--------------D---PLLG----PEMR 912 (1073)
T ss_dssp HHHHHHHHHTTCCHHHHTCCSCCC-CSSEEEEEEECG------GGGCTTS--------------C---CCCC----SSCC
T ss_pred HHHHHHHHHcCCCchhcccCcCcC-CCeEEEEeccCC------cccCCCC--------------c---CCCC----Cccc
Confidence 999999999999998766644433 378899998862 2111110 0 0011 1112
Q ss_pred cceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 444 SLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 444 s~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
| .|.+++.|.|.++|..++..+.
T Consensus 913 s-tGev~g~~~~~~~a~~ka~~~~ 935 (1073)
T 1a9x_A 913 S-TGEVMGVGRTFAEAFAKAQLGS 935 (1073)
T ss_dssp C-CEEEEEEESSHHHHHHHHHHHT
T ss_pred c-cCceEEecCCHHHHHHhhHHhc
Confidence 2 5789999999999999988776
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=323.01 Aligned_cols=292 Identities=14% Similarity=0.167 Sum_probs=214.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHc-C-CEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEM-G-IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~el-G-i~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
+.+||||+|+|.. ..+++++++. | +++++++++++ ++....+|+.+.++. ..+....+.++++++++++|+
T Consensus 3 ~~~~Ili~g~g~~-~~l~~~l~~~~~~~~v~~~d~~~~--~~~~~~~d~~~~~~~----~~~~~~~~~l~~~~~~~~~d~ 75 (331)
T 2pn1_A 3 QKPHLLITSAGRR-AKLVEYFVKEFKTGRVSTADCSPL--ASALYMADQHYIVPK----IDEVEYIDHLLTLCQDEGVTA 75 (331)
T ss_dssp TCCEEEEESCTTC-HHHHHHHHHHCCSSEEEEEESCTT--CGGGGGSSSEEECCC----TTSTTHHHHHHHHHHHHTCCE
T ss_pred ccceEEEecCCch-HHHHHHHHHhcCCCEEEEEeCCCc--chhHHhhhceecCCC----CCChhHHHHHHHHHHHcCCCE
Confidence 3569999998865 5688888886 7 89998877665 455668999888751 112234899999999999999
Q ss_pred EEeCCCcccc-cHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH--HhcCCc
Q psy15244 134 IHPGYGFLSE-REDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC--DEVEFP 210 (1427)
Q Consensus 134 I~pg~gflsE-~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a--~~iGyP 210 (1427)
|+|+++.... .+.+++.++..|++++||+++++..+.||..++++++++|||+|++. .+.+++.+++ +.++||
T Consensus 76 vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~----~~~~~~~~~~~~~~~~~P 151 (331)
T 2pn1_A 76 LLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTY----ATMASFEEALAAGEVQLP 151 (331)
T ss_dssp EEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEE----SSHHHHHHHHHTTSSCSC
T ss_pred EEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEE----ecHHHhhhhhhcccCCCC
Confidence 9998763221 12346677888999999999999999999999999999999999975 2567777666 478999
Q ss_pred EEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEec-ccccEEEeeeecccccc
Q psy15244 211 VILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGD-KYGDVVHLYERDCSMQR 289 (1427)
Q Consensus 211 vVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~D-g~G~vv~l~erd~s~qr 289 (1427)
+||||..|+||+|++++++.+|+.++++. ...+++|+||+ |+|+++.++.| .+|+++.++.+.+...+
T Consensus 152 ~vvKp~~g~g~~gv~~v~~~~el~~~~~~----------~~~~lvee~i~-G~e~~v~~~~d~~~G~~~~~~~~~~~~~~ 220 (331)
T 2pn1_A 152 VFVKPRNGSASIEVRRVETVEEVEQLFSK----------NTDLIVQELLV-GQELGVDAYVDLISGKVTSIFIKEKLTMR 220 (331)
T ss_dssp EEEEESBC---------------------------------CEEEEECCC-SEEEEEEEEECTTTCCEEEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCCeEEeCCHHHHHHHHHh----------CCCeEEEecCC-CcEEEEEEEEecCCCeEEEEEEEEEEEec
Confidence 99999999999999999999999887653 25899999999 69999999998 77888876655443322
Q ss_pred ccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHH
Q psy15244 290 RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQI 369 (1427)
Q Consensus 290 ~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i 369 (1427)
.. .. ...+.+ . .+++.+.+.++++++||.|.+++||+. .+|++||||||||+++.+.+ +..+|+|++++++
T Consensus 221 ~g-~~-~~~~~~-~----~~~~~~~~~~~~~~lg~~G~~~vd~~~-~~g~~~~iEiN~R~~g~~~~-~~~~G~~~~~~~~ 291 (331)
T 2pn1_A 221 AG-ET-DKSRSV-L----RDDVFELVEHVLDGSGLVGPLDFDLFD-VAGTLYLSEINPRFGGGYPH-AYECGVNFPAQLY 291 (331)
T ss_dssp TT-EE-EEEEEE-C----CHHHHHHHHHHHTTTCCCEEEEEEEEE-ETTEEEEEEEESSCCTTHHH-HHHTTCCHHHHHH
T ss_pred CC-ce-eEeEEe-c----cHHHHHHHHHHHHHhCCcceEEEEEEE-cCCCEEEEEEeCCCCCchHH-HHHcCCCHHHHHH
Confidence 22 12 122211 2 256888999999999999999999996 46789999999999998764 6789999999999
Q ss_pred HHHcCCCCc
Q psy15244 370 KIAQGKSLT 378 (1427)
Q Consensus 370 ~iA~G~~l~ 378 (1427)
++++|.+++
T Consensus 292 ~~~~g~~~~ 300 (331)
T 2pn1_A 292 RNLMHEINV 300 (331)
T ss_dssp HHHTTCCCC
T ss_pred HHHcCCCCC
Confidence 999999864
|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=329.15 Aligned_cols=301 Identities=19% Similarity=0.149 Sum_probs=225.1
Q ss_pred CCEEEEEcCC-----H----HHHHHHHHHHHcCCEEEEEecCCCccCccc-----------cccceEE----EcCCCCCc
Q psy15244 57 MEKILIANRS-----E----VAIRVARACNEMGIKSVGIYSEQDKFSAHR-----------TKVDQAF----LVGKGMPP 112 (1427)
Q Consensus 57 ~kkVLIagrG-----e----ia~riiraa~elGi~~vav~s~~d~~s~~~-----------~~aDe~~----~i~~~~~~ 112 (1427)
.|||.|+-+| + .|..+++++++.||+++.|+.+.+....+. ..+|..+ .+. ....
T Consensus 3 kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (357)
T 4fu0_A 3 NKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWFEDSKNLCPVVVS-QNRS 81 (357)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECSCTHHHHTTCGGGCGGGEEEEEEC-CCTT
T ss_pred CCEEEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEEeCCCceeecCCCHHHhhcCcchhhhhcccccccc-cccc
Confidence 4688777433 2 245689999999999999986655321111 1111111 111 0000
Q ss_pred ccCCCCHHHHHHHHHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc
Q psy15244 113 VAAYLNIPEIICIAKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTT 191 (1427)
Q Consensus 113 ~~~yldi~~Ii~ia~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~ 191 (1427)
...+ .+.+....+..++|+|+|. +|++.|+..++..|+.+||+|+||++.++.++.||..+|++++++|||+|++.
T Consensus 82 ~~~~--~~~~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~- 158 (357)
T 4fu0_A 82 VKGF--LEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSV- 158 (357)
T ss_dssp TCEE--EEC----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEE-
T ss_pred ccch--hhhhhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEE-
Confidence 0001 1233344556789999998 89999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCH---HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEE
Q psy15244 192 EPVTDV---DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQ 268 (1427)
Q Consensus 192 ~~v~s~---eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVq 268 (1427)
.+.+. .++.++++++|||+||||+.|+||+||++|++.+||.++++.+.. .+..+++|+||+ |+|++|+
T Consensus 159 -~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~------~~~~vlvE~~i~-G~e~~v~ 230 (357)
T 4fu0_A 159 -TFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFE------HDTEVIVEETIN-GFEVGCA 230 (357)
T ss_dssp -EEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTT------TCSEEEEEECCC-SEEEEEE
T ss_pred -eecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhc------cCCeEEEEEecC-CEEEEEE
Confidence 33332 345567789999999999999999999999999999999876543 267899999998 9999999
Q ss_pred EEecccccEEEee--eeccccccccce-----EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEE
Q psy15244 269 ILGDKYGDVVHLY--ERDCSMQRRYQK-----VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFY 341 (1427)
Q Consensus 269 vl~Dg~G~vv~l~--erd~s~qr~~qk-----~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~y 341 (1427)
+++++.+.+..+. ...+...++.+| .....|+ .++++..+++.+.|.+++++||++|.++|||++|++|++|
T Consensus 231 vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa-~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~ 309 (357)
T 4fu0_A 231 VLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPA-RIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIV 309 (357)
T ss_dssp EEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSC-SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEE
T ss_pred EEecCCceEEEEEEEEcccccccccccccCCCceEecCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEE
Confidence 9998765443332 233344433332 3345566 6999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCc----hhHHHHHhCCCHHHHHHH
Q psy15244 342 FIEVNPRLQVE----HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 342 fIEINpRl~ge----~~vte~~tGiDLv~~~i~ 370 (1427)
|+|||||++-. .|..-.++|+|+.+..-+
T Consensus 310 vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 342 (357)
T 4fu0_A 310 FNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDK 342 (357)
T ss_dssp EEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHH
Confidence 99999999743 244445689987765444
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=304.10 Aligned_cols=279 Identities=19% Similarity=0.218 Sum_probs=219.5
Q ss_pred CCCCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHH
Q psy15244 55 KTMEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICI 125 (1427)
Q Consensus 55 ~~~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~i 125 (1427)
.|++||+|+.+|. .+..+++++++.|++++.++..... . ..
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~------------------------~--~~---- 60 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP------------------------L--SA---- 60 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSC------------------------T--TH----
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCch------------------------H--HH----
Confidence 4677899987653 4678999999999999999733210 0 01
Q ss_pred HHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Q psy15244 126 AKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFC 204 (1427)
Q Consensus 126 a~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a 204 (1427)
.++.++|+|+|. .|...|+..++..++..|++++|++++++..+.||..++++++++|||+|++. .+.+.+++.+++
T Consensus 61 l~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~ 138 (317)
T 4eg0_A 61 LKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFE--TVMRGDDYAARA 138 (317)
T ss_dssp HHHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEETTSCHHHHH
T ss_pred hhhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEE--EEECchhHHHHH
Confidence 134679999997 45556888899999999999999999999999999999999999999999987 566666676666
Q ss_pred ----HhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEe
Q psy15244 205 ----DEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHL 280 (1427)
Q Consensus 205 ----~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l 280 (1427)
+.+|||+||||..|+||+|+++|++.+||.++++.+.. .+..++||+||+.|+|++|.+++|+.+.++.+
T Consensus 139 ~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~i~~G~E~~v~vl~~~~~~~~~i 212 (317)
T 4eg0_A 139 TDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT------HDKIVIVEKSIEGGGEYTACIAGDLDLPLIKI 212 (317)
T ss_dssp HHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTT------TCSEEEEEECCCSSEEEEEEEETTCCCCCEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------CCCeEEEEcCCCCCcEEEEEEECCcccceEEE
Confidence 88999999999999999999999999999999876532 25789999999978999999999876666665
Q ss_pred eeecc--ccccc--cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----
Q psy15244 281 YERDC--SMQRR--YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE---- 352 (1427)
Q Consensus 281 ~erd~--s~qr~--~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge---- 352 (1427)
..... ..... ........|+ .++++..+++.+.+.++++++|++|.+++||+++++|++||||||||++-.
T Consensus 213 ~~~~~~~~~~~k~~~g~~~~~~P~-~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~ 291 (317)
T 4eg0_A 213 VPAGEFYDYHAKYVANDTQYLIPC-GLPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSL 291 (317)
T ss_dssp EC---------------CEEESSC-SSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSH
T ss_pred eeCCceechhhcccCCCeeEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccH
Confidence 43221 11111 1233467788 599999999999999999999999999999999988999999999999843
Q ss_pred hhHHHHHhCCCHHHHHHHHH
Q psy15244 353 HTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 353 ~~vte~~tGiDLv~~~i~iA 372 (1427)
.+.....+|+|+.+...++.
T Consensus 292 ~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 292 PPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 34445568999998877764
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=301.49 Aligned_cols=302 Identities=17% Similarity=0.154 Sum_probs=227.8
Q ss_pred CCEEEEEcCC---H------HHHHHHHHH-HHcCCEEEEEecCCCccCcc-------------cccc-ceEEEcCCCCCc
Q psy15244 57 MEKILIANRS---E------VAIRVARAC-NEMGIKSVGIYSEQDKFSAH-------------RTKV-DQAFLVGKGMPP 112 (1427)
Q Consensus 57 ~kkVLIagrG---e------ia~riiraa-~elGi~~vav~s~~d~~s~~-------------~~~a-De~~~i~~~~~~ 112 (1427)
++||+|+.+| | .|..+++++ ++.|++++.|+.+.+..-.. ..+. +.. + ...
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~- 77 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFM---K-TVD- 77 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHH---T-SCC-
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhccccc---c-ccc-
Confidence 3578888755 2 367799999 99999999998766431110 0011 000 0 000
Q ss_pred ccCCCCHHHHHHHHHhcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCcc
Q psy15244 113 VAAYLNIPEIICIAKNNNVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTT 191 (1427)
Q Consensus 113 ~~~yldi~~Ii~ia~~~~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~ 191 (1427)
...|.+...++. +..++|+|+|.. |...|+..++..++..|++++|++++++..+.||..+|++++++|||+|++.
T Consensus 78 ~~~~~~~~~~~~--~~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~- 154 (377)
T 1ehi_A 78 ASDPLARIHALK--SAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYI- 154 (377)
T ss_dssp TTCTTCTTGGGG--TTCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEE-
T ss_pred cccccCcchhhc--cccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEE-
Confidence 000111111111 235799999996 7778888889999999999999999999999999999999999999999986
Q ss_pred ccCCCHHH----HHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEE
Q psy15244 192 EPVTDVDK----VKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEV 267 (1427)
Q Consensus 192 ~~v~s~ee----a~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieV 267 (1427)
.+.+.++ +.++++.+|||+||||..|+||+||++|++.+||..+++.+.. .+..++||+||+|.+|++|
T Consensus 155 -~~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~G~~E~~v 227 (377)
T 1ehi_A 155 -VVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ------YDYKVLIEEAVNGARELEV 227 (377)
T ss_dssp -EECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTT------TCSCEEEEECCCCSCEEEE
T ss_pred -EEeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHh------cCCcEEEEcCCCCCceEEE
Confidence 4555544 6667788999999999999999999999999999999876532 1568999999994499999
Q ss_pred EEEecccccEEEeeeeccc-------cccc---c--c-eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEE
Q psy15244 268 QILGDKYGDVVHLYERDCS-------MQRR---Y--Q-KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334 (1427)
Q Consensus 268 qvl~Dg~G~vv~l~erd~s-------~qr~---~--q-k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflv 334 (1427)
.+++|+++.++...+..+. +.+. + . ......|+. ++++..+++.+.+.+++++||+.|.+++||++
T Consensus 228 ~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 306 (377)
T 1ehi_A 228 GVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDFLL 306 (377)
T ss_dssp EEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 9999876666666665441 1111 1 1 245677884 99999999999999999999999999999999
Q ss_pred cCCCcEEEEeeCCCCCCch----hHHHHHhCCCHHHH---HHHHHcC
Q psy15244 335 DKDDNFYFIEVNPRLQVEH----TLSEEITGIDVVQS---QIKIAQG 374 (1427)
Q Consensus 335 d~dG~~yfIEINpRl~ge~----~vte~~tGiDLv~~---~i~iA~G 374 (1427)
+++|++||+|||||++... +....++|+|+.+. ++..|++
T Consensus 307 ~~~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~li~~al~ 353 (377)
T 1ehi_A 307 DENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFE 353 (377)
T ss_dssp CTTCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHHHHHHHHH
T ss_pred eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9889999999999999652 33344799999554 5555554
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=292.67 Aligned_cols=273 Identities=19% Similarity=0.303 Sum_probs=218.3
Q ss_pred CCCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHH
Q psy15244 56 TMEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIA 126 (1427)
Q Consensus 56 ~~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia 126 (1427)
|++||+|++.|. .+..++++++++|+++++++.+... ... +
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~---~~~---------------------------~ 50 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD---VTQ---------------------------L 50 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSC---GGG---------------------------T
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchH---HHH---------------------------h
Confidence 356899999876 6788999999999999988765211 000 0
Q ss_pred HhcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---
Q psy15244 127 KNNNVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKE--- 202 (1427)
Q Consensus 127 ~~~~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~--- 202 (1427)
.+.++|+|++.. +...|+..++..++..|++++||+++++..+.||..++++++++|||+|++. .+.+. ++.+
T Consensus 51 ~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~--~~~~~-~~~~~~~ 127 (306)
T 1iow_A 51 KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWV--ALTRA-EFEKGLS 127 (306)
T ss_dssp TTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EEEHH-HHHHCCC
T ss_pred hccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeE--EEchh-hhhccch
Confidence 124688888874 3334666778889999999999999999999999999999999999999986 45666 6666
Q ss_pred -----HHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccE
Q psy15244 203 -----FCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 203 -----~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~v 277 (1427)
++++++||+||||..|+||+|++++++.+|+.++++.+.. + +..+++|+||+ |+|++|.++. |++
T Consensus 128 ~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~-----~-~~~~lvee~i~-g~e~~v~~~~---g~~ 197 (306)
T 1iow_A 128 DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-----H-DEEVLIEKWLS-GPEFTVAILG---EEI 197 (306)
T ss_dssp THHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT-----T-CSEEEEEECCC-CCEEEEEEET---TEE
T ss_pred hhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----h-CCCEEEEeCcC-CEEEEEEEEC---CCc
Confidence 7788999999999999999999999999999998876532 1 57899999999 8999999993 344
Q ss_pred EEeeeec-----cccccc--cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCC
Q psy15244 278 VHLYERD-----CSMQRR--YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQ 350 (1427)
Q Consensus 278 v~l~erd-----~s~qr~--~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ 350 (1427)
+.+.+.. +....+ ........|+ .++++..+++.+.+.++++++|+.|.+++||+++++|++||+|||||++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~rpg 276 (306)
T 1iow_A 198 LPSIRIQPSGTFYDYEAKFLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 (306)
T ss_dssp CCCEEEECSSSSSCHHHHHTCSCCEEESSC-CCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESSCC
T ss_pred cceEEEEeCCCeEchhheecCCCeeEEcCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCCCC
Confidence 4443321 111111 1345567788 4899999999999999999999999999999999989999999999998
Q ss_pred Cc-h---hHHHHHhCCCHHHHHHHHH
Q psy15244 351 VE-H---TLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 351 ge-~---~vte~~tGiDLv~~~i~iA 372 (1427)
+. + +.....+|+|+.+..+++.
T Consensus 277 ~~~~s~~p~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 277 MTSHSLVPMAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp CSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 75 2 3445679999999998865
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=304.62 Aligned_cols=299 Identities=19% Similarity=0.223 Sum_probs=222.2
Q ss_pred CCEEEEEcCC---------HHHHHHHHHHHHcCCEEEEEecCCCccCcccc----ccc--eEEEcCCCCCcccCCCCHHH
Q psy15244 57 MEKILIANRS---------EVAIRVARACNEMGIKSVGIYSEQDKFSAHRT----KVD--QAFLVGKGMPPVAAYLNIPE 121 (1427)
Q Consensus 57 ~kkVLIagrG---------eia~riiraa~elGi~~vav~s~~d~~s~~~~----~aD--e~~~i~~~~~~~~~yldi~~ 121 (1427)
++||+|+.+| ..|..+++++++.|++++.++.+++....... .++ ..+.++.+ ....+ ..
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~ 77 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENG--EALEI---SQ 77 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGS--EEECS---SG
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhccccc--ccccc---cc
Confidence 4578887755 24678999999999999999877653211000 000 00000000 00001 11
Q ss_pred HHHH-HHhcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH-
Q psy15244 122 IICI-AKNNNVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD- 198 (1427)
Q Consensus 122 Ii~i-a~~~~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e- 198 (1427)
++.. .+..++|+|+|.. |...|+..++..++..|++++||+++++..+.||..++++++++|||+|++. .+.+.+
T Consensus 78 ~~~~~~~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~ 155 (364)
T 2i87_A 78 LLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYI--SFLRSEY 155 (364)
T ss_dssp GGGBCTTSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEE--EEEHHHH
T ss_pred cccccccccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhh
Confidence 2111 1356799999985 7778888889999999999999999999999999999999999999999986 455554
Q ss_pred ------HHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEec
Q psy15244 199 ------KVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGD 272 (1427)
Q Consensus 199 ------ea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~D 272 (1427)
++.++++++|||+||||..|+||+||++|++.+||..+++.+.. .+..++||+||+ |+|++|.++++
T Consensus 156 ~~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~I~-G~E~~v~vl~~ 228 (364)
T 2i87_A 156 EKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ------FDRKLVIEQGVN-AREIEVAVLGN 228 (364)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT------TCSEEEEEECCC-CEEEEEEEEES
T ss_pred cccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEEeCcc-CeEEEEEEEcC
Confidence 46677788999999999999999999999999999999876542 257899999999 79999999998
Q ss_pred ccccEEEeeeecc--ccccccce-----EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEee
Q psy15244 273 KYGDVVHLYERDC--SMQRRYQK-----VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEV 345 (1427)
Q Consensus 273 g~G~vv~l~erd~--s~qr~~qk-----~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEI 345 (1427)
+++.++...+..+ ...+...+ .....|+ .++++..+++.+.+.+++++||+.|.+++||+++++|++||+||
T Consensus 229 ~~~~~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEi 307 (364)
T 2i87_A 229 DYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPA-DLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINET 307 (364)
T ss_dssp SSCEECCCEEECCSCCC-----------CCEESSC-SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEE
T ss_pred CCcEEeeeEEEecCCCcCCHHHcccCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCEEEEEE
Confidence 7554444444332 11111111 2345788 49999999999999999999999999999999998899999999
Q ss_pred CCCCCCch----hHHHHHhCCCHHHHHHH
Q psy15244 346 NPRLQVEH----TLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 346 NpRl~ge~----~vte~~tGiDLv~~~i~ 370 (1427)
|||+++.. +....++|+|+.+...+
T Consensus 308 N~rpg~t~~s~~p~~~~~~G~~~~~l~~~ 336 (364)
T 2i87_A 308 NAMPGFTAFSMYPKLWENMGLSYPELITK 336 (364)
T ss_dssp ESSCCCSTTSHHHHHHHHTTCCHHHHHHH
T ss_pred eCCCCCCchhHHHHHHHHhCCCHHHHHHH
Confidence 99999752 33445689998665444
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=301.50 Aligned_cols=234 Identities=22% Similarity=0.276 Sum_probs=197.9
Q ss_pred hcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH----HHHH
Q psy15244 128 NNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD----KVKE 202 (1427)
Q Consensus 128 ~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e----ea~~ 202 (1427)
..++|+|+|+ +|...|+..++..|+.+|++++|+++.++..+.||..+|++++++|||+|++. .+.+.+ ++.+
T Consensus 96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~ 173 (364)
T 3i12_A 96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFI--TLTRTNRHAFSFAE 173 (364)
T ss_dssp CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EEETTTGGGCCHHH
T ss_pred cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEEccccchhhHHH
Confidence 3579999999 79999999999999999999999999999999999999999999999999987 556655 7778
Q ss_pred HHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeee
Q psy15244 203 FCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE 282 (1427)
Q Consensus 203 ~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e 282 (1427)
+++++|||+||||..|+||+|+++|++.+||.++++.+... +..++||+||+ |+|++|.++.|+.+.+....+
T Consensus 174 ~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~~e 246 (364)
T 3i12_A 174 VESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF------DHKVVVEQGIK-GREIECAVLGNDNPQASTCGE 246 (364)
T ss_dssp HHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH------CSEEEEEECCC-SEEEEEEEEESSSCEEEEEEE
T ss_pred HHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc------CCcEEEEcCcC-CeEEEEEEEeCCCceEeeeEE
Confidence 88899999999999999999999999999999999877543 57899999999 699999999987655555444
Q ss_pred e---cc--cccccc---ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc--
Q psy15244 283 R---DC--SMQRRY---QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-- 352 (1427)
Q Consensus 283 r---d~--s~qr~~---qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge-- 352 (1427)
. ++ .+...+ .......|+ .++++..+++.+.+.++++++|++|.+++||+++++|++||+|||+|++..
T Consensus 247 i~~~~~~~~~~~ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~ 325 (364)
T 3i12_A 247 IVLNSEFYAYDTKYIDDNGAQVVVPA-QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTNI 325 (364)
T ss_dssp EECCTTCC--TTTTSGGGGCEEESSC-SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred EecCCCccCHHHcccCCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCEEEEEeeCCCCCCCC
Confidence 2 11 111111 125677888 499999999999999999999999999999999988999999999988853
Q ss_pred --hhHHHHHhCCCHHHHHHHH
Q psy15244 353 --HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 353 --~~vte~~tGiDLv~~~i~i 371 (1427)
.+....++|+|+.+...++
T Consensus 326 s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 326 SMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp CHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHhCcCHHHHHHHH
Confidence 3444566899988866554
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=302.06 Aligned_cols=234 Identities=21% Similarity=0.235 Sum_probs=196.6
Q ss_pred hcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH----HHHH
Q psy15244 128 NNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD----KVKE 202 (1427)
Q Consensus 128 ~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e----ea~~ 202 (1427)
..++|+|+|+ +|...|+..++..|+..|++++|+++.++..+.||..+|++++++|||+|++. .+.+.+ ++.+
T Consensus 115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~ 192 (386)
T 3e5n_A 115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFV--CFDRHTAAHADVDT 192 (386)
T ss_dssp CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEE--EEEHHHHTTCCHHH
T ss_pred cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcccchhhHHH
Confidence 4579999999 89999998999999999999999999999999999999999999999999986 566666 6778
Q ss_pred HHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeee
Q psy15244 203 FCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE 282 (1427)
Q Consensus 203 ~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e 282 (1427)
+++.+|||+||||..|+||+|+++|++.+||.++++.+.. .+..++||+||+ |+|++|.+++++...++...+
T Consensus 193 ~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~------~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~ge 265 (386)
T 3e5n_A 193 LIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA------YDHKVLVEAAVA-GREIECAVLGNAVPHASVCGE 265 (386)
T ss_dssp HHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTT------TCSEEEEEECCC-SEEEEEEEECSSSCEEEEEEE
T ss_pred HHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHh------CCCcEEEEcCCC-CeEEEEEEEeCCCceEEEeEE
Confidence 8889999999999999999999999999999999876542 257899999999 799999999987666665555
Q ss_pred ecccc--ccccce------EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc--
Q psy15244 283 RDCSM--QRRYQK------VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-- 352 (1427)
Q Consensus 283 rd~s~--qr~~qk------~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge-- 352 (1427)
..+.. .....+ .....|+ .++++..+++.+.+.++++++|++|.+++||+++++|++||+|||||++-.
T Consensus 266 i~~~~~~~d~~~ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~ 344 (386)
T 3e5n_A 266 VVVHDAFYSYATKYISEHGAEIVIPA-DIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRI 344 (386)
T ss_dssp ECC-----------------CEESSC-SSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred EEeCCcccchhcccCCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCCcc
Confidence 54431 111111 3456688 499999999999999999999999999999999999999999999999843
Q ss_pred --hhHHHHHhCCCHHHHHHHH
Q psy15244 353 --HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 353 --~~vte~~tGiDLv~~~i~i 371 (1427)
.|....++|+|+.+...++
T Consensus 345 S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 345 SVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp CHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHH
Confidence 3444556899988766544
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=295.76 Aligned_cols=299 Identities=17% Similarity=0.196 Sum_probs=213.9
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCc-cccccceEE---EcCCCCCcc--cCCCCHHH
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSA-HRTKVDQAF---LVGKGMPPV--AAYLNIPE 121 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~-~~~~aDe~~---~i~~~~~~~--~~yldi~~ 121 (1427)
++||+|+-+|. .|..+++++++.|++++.++.+.+..-. .....+... .+. ..... ....+...
T Consensus 37 ~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 115 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLM-TNDTIIASQKIKPSD 115 (383)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCC-CTTSCCGGGEECGGG
T ss_pred CCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccc-ccccccccccccccc
Confidence 34777765432 4667899999999999999876542110 000000000 000 00000 00000001
Q ss_pred HHHHHHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCC-CCCCCCccccCCCH--
Q psy15244 122 IICIAKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKAD-VPIIPGTTEPVTDV-- 197 (1427)
Q Consensus 122 Ii~ia~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aG-Vpvp~~~~~~v~s~-- 197 (1427)
++ .++|.|+|. .|...|+..++..++..|++++|+++.++..+.||..+|++++++| ||+|++. .+.+.
T Consensus 116 ~~-----~~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~--~~~~~~~ 188 (383)
T 3k3p_A 116 IY-----EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYV--ALIEGEP 188 (383)
T ss_dssp GC-----CTTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEE--EEETTSC
T ss_pred cc-----cCCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEE--EEeCccc
Confidence 10 369999997 4666688899999999999999999999999999999999999999 9999986 34443
Q ss_pred --HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc
Q psy15244 198 --DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG 275 (1427)
Q Consensus 198 --eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G 275 (1427)
+++.++++++|||+||||..|+||+||++|++.+||.++++.+... +..++||+||+ |+|++|.+++|+..
T Consensus 189 ~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~------~~~vlVEe~I~-G~E~~v~vl~d~~~ 261 (383)
T 3k3p_A 189 LESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY------DSRVLIEQGVD-AREIEVGILGNTDV 261 (383)
T ss_dssp HHHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH------CSEEEEEECCC-SEEEEEEEEESSSC
T ss_pred hhHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC------CCeEEEEcCCC-CeEEEEEEEeCCCe
Confidence 5677788899999999999999999999999999999999877643 57899999999 89999999988654
Q ss_pred cEEEeeeec--ccccccc-----ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCC
Q psy15244 276 DVVHLYERD--CSMQRRY-----QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPR 348 (1427)
Q Consensus 276 ~vv~l~erd--~s~qr~~-----qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpR 348 (1427)
.+..+.+.. +.+.... .......|+. ++++..+++.+.+.++++++|++|.+++||+++++|++||+|||||
T Consensus 262 ~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtr 340 (383)
T 3k3p_A 262 KTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTM 340 (383)
T ss_dssp EECCCEEEC-----------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESS
T ss_pred eEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCC
Confidence 433333321 1111111 2345677884 9999999999999999999999999999999998899999999999
Q ss_pred CCCc----hhHHHHHhCCCHHHHHHHH
Q psy15244 349 LQVE----HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 349 l~ge----~~vte~~tGiDLv~~~i~i 371 (1427)
++-. .+....++|+|+.+...++
T Consensus 341 PG~t~~S~~p~~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 341 PGFTQWSMYPLLWENMGLSYSVLIEEL 367 (383)
T ss_dssp CCCC--CHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 9833 4555566899987765554
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=285.62 Aligned_cols=271 Identities=16% Similarity=0.195 Sum_probs=208.2
Q ss_pred CEEEEEcCC---------HHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHh
Q psy15244 58 EKILIANRS---------EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKN 128 (1427)
Q Consensus 58 kkVLIagrG---------eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~ 128 (1427)
+||+|+.+| ..+..+++++++.|++++.++.+.... . +.+.
T Consensus 4 m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~---------------------------~---~~~~ 53 (307)
T 3r5x_A 4 MRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMD---------------------------L---IEKA 53 (307)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGG---------------------------H---HHHT
T ss_pred cEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchh---------------------------H---HHhc
Confidence 378887766 346678999999999999887642110 0 1233
Q ss_pred cCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHH-HHHh
Q psy15244 129 NNVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKE-FCDE 206 (1427)
Q Consensus 129 ~~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~-~a~~ 206 (1427)
.++|+|+|+. |...|+..++..++..|++++||+++++..+.||..++++++++|||+|++. .+.+.+++.. +++.
T Consensus 54 ~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~ 131 (307)
T 3r5x_A 54 KDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWI--ELTKMEDLNFDELDK 131 (307)
T ss_dssp TTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEESSSCCCHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEeChhhhhHHHHHh
Confidence 5799999985 3334677788899999999999999999999999999999999999999986 5556555543 6788
Q ss_pred cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccc
Q psy15244 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS 286 (1427)
Q Consensus 207 iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s 286 (1427)
++||+||||..|+||+||+++++.+++.++++.+... +..+++|+||+ |+|++|.++.+ +++.+.+..+.
T Consensus 132 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvee~i~-G~e~~v~v~~g---~~~~~~~~~~~ 201 (307)
T 3r5x_A 132 LGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW------DSEVVIEKYIK-GEEITCSIFDG---KQLPIISIRHA 201 (307)
T ss_dssp HCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH------CSEEEEEECCC-SEEEEEEEETT---EECCCEEEEEE
T ss_pred cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEECCcC-CEEEEEEEECC---EEeeEEEEEcC
Confidence 9999999999999999999999999999999876543 57899999999 79999999643 34333222221
Q ss_pred cc--cccceE----EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHH
Q psy15244 287 MQ--RRYQKV----IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLS 356 (1427)
Q Consensus 287 ~q--r~~qk~----ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vt 356 (1427)
.+ ....+. ....|+ .++++..+++.+.+.++++++|++|.+++||+++ +|++||||||||++.. .+..
T Consensus 202 ~~~~~~~~~~~~~g~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s~~~~~ 279 (307)
T 3r5x_A 202 AEFFDYNAKYDDASTIEEVI-ELPAELKERVNKASLACYKALKCSVYARVDMMVK-DGIPYVMEVNTLPGMTQASLLPKS 279 (307)
T ss_dssp EEEETTEEEEEEEEEEEEEC-CCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-TTEEEEEEEESSCCCSTTSHHHHH
T ss_pred CcccChhhcCCCCCCeEecC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCeEEEEEEcCCCCCCccCHHHHH
Confidence 11 221222 222377 5899999999999999999999999999999999 5889999999999853 3445
Q ss_pred HHHhCCCHHHHHHHHH
Q psy15244 357 EEITGIDVVQSQIKIA 372 (1427)
Q Consensus 357 e~~tGiDLv~~~i~iA 372 (1427)
...+|+|+.+...++.
T Consensus 280 ~~~~G~~~~~li~~ll 295 (307)
T 3r5x_A 280 ADAAGIHYSKLLDMII 295 (307)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 6679999988666553
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=292.09 Aligned_cols=233 Identities=18% Similarity=0.199 Sum_probs=186.9
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH----HHHH
Q psy15244 129 NNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK----VKEF 203 (1427)
Q Consensus 129 ~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee----a~~~ 203 (1427)
.++|+|+|. .|...|+..++..|+..||+++|+++.++..+.||..+|++++++|||+|++. .+.+.++ +.++
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~ 174 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWH--TLSPRDATEGVYQRL 174 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCE--EECTTSCCTTHHHHH
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEE--EEechhhhhhHHHHH
Confidence 579999998 57778998999999999999999999999999999999999999999999986 4554442 5567
Q ss_pred HHhcCCc-EEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeee
Q psy15244 204 CDEVEFP-VILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE 282 (1427)
Q Consensus 204 a~~iGyP-vVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e 282 (1427)
++++||| +||||+.|+||+||++|++.+||.++++.+.+ .+..++||+||+ |+|++|.+++++...+....+
T Consensus 175 ~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~------~~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~~e 247 (372)
T 3tqt_A 175 LDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR------YDDRLMVEPRIR-GREIECAVLGNGAPKASLPGE 247 (372)
T ss_dssp HHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTT------TCSCEEEEECCC-SEEEEEEEEESSSCEECCCEE
T ss_pred HHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh------cCCCEEEECCCC-CEEEEEEEEeCCCceEeeeEE
Confidence 7899999 99999999999999999999999999876542 157899999999 899999999986422222222
Q ss_pred ec-----ccccccc--ce-EEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc--
Q psy15244 283 RD-----CSMQRRY--QK-VIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-- 352 (1427)
Q Consensus 283 rd-----~s~qr~~--qk-~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge-- 352 (1427)
.. +.++.++ .. .....|+ .++++..+++.+.|.+++++||++|.+++||+++++|++||+|||||++-.
T Consensus 248 i~~~~~~~d~~~ky~~g~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~ 326 (372)
T 3tqt_A 248 IIPHHDYYSYDAKYLDPNGATTTTSV-DLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTIPGFTNI 326 (372)
T ss_dssp EECC---------------CEEESCC-CCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred EecCCCccchhhcccCCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCCCcEEEEEEECCCCcCcc
Confidence 11 1222222 22 5567788 499999999999999999999999999999999998999999999999833
Q ss_pred --hhHHHHHhCCCHHHHHHHH
Q psy15244 353 --HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 353 --~~vte~~tGiDLv~~~i~i 371 (1427)
.|....++|+|+.+...++
T Consensus 327 S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 327 SMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp CHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHH
Confidence 4445667899987766544
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=294.31 Aligned_cols=297 Identities=19% Similarity=0.186 Sum_probs=221.1
Q ss_pred CCEEEEEcCCH---------HHHHHHHHHHHcCCEEEEEecCCCccCccc-----ccc----ceEEEcCCCCCcccCCCC
Q psy15244 57 MEKILIANRSE---------VAIRVARACNEMGIKSVGIYSEQDKFSAHR-----TKV----DQAFLVGKGMPPVAAYLN 118 (1427)
Q Consensus 57 ~kkVLIagrGe---------ia~riiraa~elGi~~vav~s~~d~~s~~~-----~~a----De~~~i~~~~~~~~~yld 118 (1427)
.+||+|+.+|. .|..+++++++.|++++.++.+++...... .+. |..+..+.+ ....
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--- 77 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDK--KMHG--- 77 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCT--TTCE---
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceeccccc--cccc---
Confidence 45788887653 377899999999999999987665311100 011 222222100 0000
Q ss_pred HHHH-HHH--HHhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccC
Q psy15244 119 IPEI-ICI--AKNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPV 194 (1427)
Q Consensus 119 i~~I-i~i--a~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v 194 (1427)
.+ +.. .+..++|+|+|. .|...|+..++..++..|++++|++++++..+.||..++++++++|||+|++. .+
T Consensus 78 --~~~~~~~~~~~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~ 153 (343)
T 1e4e_A 78 --LLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW--VI 153 (343)
T ss_dssp --EEEEETTEEEEEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EE
T ss_pred --ceeecccccccccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEE--EE
Confidence 01 000 123579999998 45566777889999999999999999999999999999999999999999986 45
Q ss_pred CCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccc
Q psy15244 195 TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 195 ~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
.+.+++. .+++|||+||||..|+||+||++|++.+||..+++.+.. .+..++||+||+ |+|++|.+++++.
T Consensus 154 ~~~~~~~--~~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~I~-G~E~~v~vl~~~~ 224 (343)
T 1e4e_A 154 NKDDRPV--AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ------YDSKILIEQAVS-GCEVGCAVLGNSA 224 (343)
T ss_dssp CTTCCCC--GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT------TCSSEEEEECCC-SEEEEEEEEEETT
T ss_pred echhhhh--hhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEEeCcC-CeEEEEEEEeCCC
Confidence 5554432 267899999999999999999999999999999876532 257899999999 8999999999865
Q ss_pred ccEE-Eeeeecc-----ccccc------cceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEE
Q psy15244 275 GDVV-HLYERDC-----SMQRR------YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYF 342 (1427)
Q Consensus 275 G~vv-~l~erd~-----s~qr~------~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yf 342 (1427)
+..+ .+.+..+ .+... ........|+ .++++..+++.+.+.+++++||+.|.+++||+++++|++||
T Consensus 225 ~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~v 303 (343)
T 1e4e_A 225 ALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPA-DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVL 303 (343)
T ss_dssp CCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSC-SSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCEEE
T ss_pred CeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCCEEE
Confidence 4211 1223221 11111 1234566788 49999999999999999999999999999999998999999
Q ss_pred EeeCCCCCCc----hhHHHHHhCCCHHHHHHHHH
Q psy15244 343 IEVNPRLQVE----HTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 343 IEINpRl~ge----~~vte~~tGiDLv~~~i~iA 372 (1427)
+|||||++.. .+....++|+|+.+...++.
T Consensus 304 iEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 304 NEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp EEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999975 24445567999988776653
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=295.27 Aligned_cols=288 Identities=19% Similarity=0.173 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCccCccc-----cccc----eEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCC
Q psy15244 68 VAIRVARACNEMGIKSVGIYSEQDKFSAHR-----TKVD----QAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY 138 (1427)
Q Consensus 68 ia~riiraa~elGi~~vav~s~~d~~s~~~-----~~aD----e~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~ 138 (1427)
.|..+++++++.|++++.++.+.+..-... .... .....+ . ........... ...++.++|.|+|..
T Consensus 23 sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~D~v~~~l 98 (346)
T 3se7_A 23 SAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSP-D-RSVHGLLVLEQ--GKYETIRLDLVLPVL 98 (346)
T ss_dssp HHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECC-C-TTTCEEEEEET--TEEEEEECSEEEECC
T ss_pred HHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceecc-C-ccCccceeccc--ccccccCCCEEEEcc
Confidence 466789999999999999987655211000 0000 000000 0 00000000000 002245799999994
Q ss_pred -CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 139 -GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 139 -gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
|...|+..++..++..|++++|+++.++..+.||..++++++++|||+|++. .+.+.+ ..+++.+|||+||||..
T Consensus 99 hG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~--~~~~~~lg~PvvvKP~~ 174 (346)
T 3se7_A 99 HGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFW--TVTADE--KIPTDQLTYPVFVKPAR 174 (346)
T ss_dssp CSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EEETTS--CCCTTTCCSSEEEEESS
T ss_pred CCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEcCcH--HHHHHhcCCCEEEEeCC
Confidence 8888998999999999999999999999999999999999999999999986 444443 33466889999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEeccccc-EEEeeeeccc------cccc
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD-VVHLYERDCS------MQRR 290 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~-vv~l~erd~s------~qr~ 290 (1427)
|+||+|+++|++.+||.++++.+.. .+..++||+||+ |+|++|.++.++.+. +..+.+..+. .|++
T Consensus 175 ~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~-G~E~~v~vl~~~~~~~~~~~~e~~~~~~~~d~~q~~ 247 (346)
T 3se7_A 175 SGSSFGVSKVAREEDLQGAVEAARE------YDSKVLIEEAVI-GTEIGCAVMGNGPELITGEVDQITLSHGFFKIHQES 247 (346)
T ss_dssp CCTTTTCEEECSHHHHHHHHHHHTT------TCSEEEEEECCC-SEEEEEEEEEETTEEEECCCEEECCC----------
T ss_pred CCCCcCEEEECCHHHHHHHHHHHHh------CCCcEEEEeCcC-CEEEEEEEEecCCCeEEEeeEEEecCCCCcCcccch
Confidence 9999999999999999999887543 257899999999 899999999986542 2223333221 1111
Q ss_pred cc-----eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhC
Q psy15244 291 YQ-----KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITG 361 (1427)
Q Consensus 291 ~q-----k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tG 361 (1427)
.. ......|+ .++++..+++.+.+.++++++|++|.+++||+++++|++||+|||||++.. .+....++|
T Consensus 248 ~~ky~~~~~~~~~pa-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G 326 (346)
T 3se7_A 248 TPESGSDNSAVTVPA-DISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRYPRMMTAAG 326 (346)
T ss_dssp ----CGGGSCEESSC-CCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHHHHHHTT
T ss_pred hccccCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhC
Confidence 11 23356788 599999999999999999999999999999999999999999999998853 344456799
Q ss_pred CCHHHHHHHH
Q psy15244 362 IDVVQSQIKI 371 (1427)
Q Consensus 362 iDLv~~~i~i 371 (1427)
+|+.+...++
T Consensus 327 ~~~~~l~~~l 336 (346)
T 3se7_A 327 LSRADVIDRL 336 (346)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998866554
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=290.53 Aligned_cols=230 Identities=20% Similarity=0.257 Sum_probs=190.4
Q ss_pred CCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHH--HHHHHHh
Q psy15244 130 NVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDK--VKEFCDE 206 (1427)
Q Consensus 130 ~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ee--a~~~a~~ 206 (1427)
++|+|+|.. |...|+..++..++.+|++++|+++.++..+.||..+|++++++|||+|++. .+.+.++ ....+++
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~~ 186 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA--VLRPPRSTLHRQECER 186 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEE--EECTTCCCCCHHHHHH
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EEECcccchhHHHHHh
Confidence 699999995 8888999999999999999999999999999999999999999999999986 4554443 1334678
Q ss_pred cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccc--cEEEeeeec
Q psy15244 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYG--DVVHLYERD 284 (1427)
Q Consensus 207 iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G--~vv~l~erd 284 (1427)
+|||+||||+.|+||+||++|++.+||.++++.+.+. +..++||+||+ |+|++|.+++++.+ .+..+.+..
T Consensus 187 lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~-G~E~~v~vl~~~~~~~~~~~~~ei~ 259 (373)
T 3lwb_A 187 LGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH------DPKVIVEAAIS-GRELECGVLEMPDGTLEASTLGEIR 259 (373)
T ss_dssp HCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT------CSSEEEEECCE-EEEEEEEEEECTTSCEEECCCEEEE
T ss_pred cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEeCCCC-CeEEEEEEEECCCCceEEeeeeEEE
Confidence 9999999999999999999999999999999876532 57899999999 89999999998766 333344443
Q ss_pred cc--------ccccc-----ceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCC
Q psy15244 285 CS--------MQRRY-----QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQV 351 (1427)
Q Consensus 285 ~s--------~qr~~-----qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~g 351 (1427)
++ +.+.. .......|+ .++++..+++.+.+.+++++||++|.+++||+++++|+ ||+|||||++.
T Consensus 260 ~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~PG~ 337 (373)
T 3lwb_A 260 VAGVRGREDSFYDFATKYLDDAAELDVPA-KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGP-VINEINTMPGF 337 (373)
T ss_dssp CCSTTCSEESSSCHHHHHTCTTCEEESSC-CCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE-EEEEEESSCCC
T ss_pred ccCCCCccccccchhhcccCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCC-EEEEecCCCCC
Confidence 33 22211 123556788 49999999999999999999999999999999999998 99999999984
Q ss_pred c----hhHHHHHhCCCHHHHHHH
Q psy15244 352 E----HTLSEEITGIDVVQSQIK 370 (1427)
Q Consensus 352 e----~~vte~~tGiDLv~~~i~ 370 (1427)
. .+....++|+|+.+...+
T Consensus 338 t~~S~~p~~~~a~Gi~~~~li~~ 360 (373)
T 3lwb_A 338 TTISMYPRMWAASGVDYPTLLAT 360 (373)
T ss_dssp STTSHHHHHHHHTTCCHHHHHHH
T ss_pred CcccHHHHHHHHhCCCHHHHHHH
Confidence 3 233456799997665433
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=279.66 Aligned_cols=231 Identities=20% Similarity=0.284 Sum_probs=189.8
Q ss_pred hcCCCEEEeCC-CcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHh
Q psy15244 128 NNNVDAIHPGY-GFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDE 206 (1427)
Q Consensus 128 ~~~vDaI~pg~-gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~ 206 (1427)
..++|+|+|+. |...|+..++..++..|++++||+++++..+.||..++++++++|||+|++. .+.+.++. .. +
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~--~~-~ 148 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV--AVRKGEPP--VV-P 148 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEETTSCC--CC-C
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEECchhh--hh-c
Confidence 56799999996 8888988899999999999999999999999999999999999999999986 44444331 22 7
Q ss_pred cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecc-
Q psy15244 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDC- 285 (1427)
Q Consensus 207 iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~- 285 (1427)
+|||+||||..|+||+|+++|++.+||.++++.+.+ .+..++||+||+|.+|+++.++++++++++...+..+
T Consensus 149 ~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~ 222 (322)
T 2fb9_A 149 FDPPFFVKPANTGSSVGISRVERFQDLEAALALAFR------YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYE 222 (322)
T ss_dssp SCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTT------TCSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEeeC
Confidence 899999999999999999999999999999876532 2578999999994399999999987655655544431
Q ss_pred -ccccccc-----eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-h---hH
Q psy15244 286 -SMQRRYQ-----KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-H---TL 355 (1427)
Q Consensus 286 -s~qr~~q-----k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge-~---~v 355 (1427)
...+... ......|+ .++++..+++.+.+.++++++|+.|.+++||+++ +|++||+|||||++.. + +.
T Consensus 223 ~~~~~~~~k~~~g~~~~~~Pa-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s~~p~ 300 (322)
T 2fb9_A 223 APFYDYETKYTPGRAELLIPA-PLDPGTQETVQELALKAYKVLGVRGMARVDFFLA-EGELYLNELNTIPGFTPTSMYPR 300 (322)
T ss_dssp CCEEETTTEEECCEEEEESSC-CCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSCHHHH
T ss_pred CCccCHHHcccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-CCcEEEEEEECCCCCCcccHHHH
Confidence 2222222 23456788 4899999999999999999999999999999999 8999999999999975 2 33
Q ss_pred HHHHhCCCHHHHHHHH
Q psy15244 356 SEEITGIDVVQSQIKI 371 (1427)
Q Consensus 356 te~~tGiDLv~~~i~i 371 (1427)
...++|+|+.+...++
T Consensus 301 ~~~~~G~~~~~l~~~l 316 (322)
T 2fb9_A 301 LFEAGGVAYPELLRRL 316 (322)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3456899988876654
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=267.23 Aligned_cols=272 Identities=18% Similarity=0.243 Sum_probs=202.3
Q ss_pred EEEEc--CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCC-EEEe
Q psy15244 60 ILIAN--RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVD-AIHP 136 (1427)
Q Consensus 60 VLIag--rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vD-aI~p 136 (1427)
|+|++ .+..+..++++|+++|+++++++..++.. .++|. + ....++| ++++
T Consensus 2 I~il~~~~~~~~~~~~~a~~~~G~~v~~~~~~~~~~----~~~~~-------------~---------~~~~~~d~~~~~ 55 (280)
T 1uc8_A 2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPALPM----VLGER-------------P---------KELEGVTVALER 55 (280)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTCCEEEEEGGGCCE----ETTBC-------------C---------GGGTTCCEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCcEEEEehhhcee----eccCC-------------C---------cccCCCCEEEEC
Confidence 77777 46778899999999999999998765531 11111 1 1224689 8888
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeec
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAA 216 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~ 216 (1427)
.++.. ++..+++.++..|+++++ +++++..+.||..++++++++|||+|++. .+.+.+++.++++++|||+|+||.
T Consensus 56 ~~~~~-~~~~~~~~l~~~g~~~~~-~~~~~~~~~dK~~~~~~l~~~gi~~p~~~--~~~~~~~~~~~~~~~~~p~vvKp~ 131 (280)
T 1uc8_A 56 CVSQS-RGLAAARYLTALGIPVVN-RPEVIEACGDKWATSVALAKAGLPQPKTA--LATDREEALRLMEAFGYPVVLKPV 131 (280)
T ss_dssp CSSHH-HHHHHHHHHHHTTCCEES-CHHHHHHHHBHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEECS
T ss_pred Cccch-hhHHHHHHHHHCCCceeC-CHHHHHHhCCHHHHHHHHHHcCcCCCCeE--eeCCHHHHHHHHHHhCCCEEEEEC
Confidence 87632 666788999999999885 59999999999999999999999999986 678999999999999999999999
Q ss_pred CCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC-CceEEEEEEecccccEEEeeeeccc-cccccceE
Q psy15244 217 FGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDR-PRHIEVQILGDKYGDVVHLYERDCS-MQRRYQKV 294 (1427)
Q Consensus 217 ~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg-greieVqvl~Dg~G~vv~l~erd~s-~qr~~qk~ 294 (1427)
.|+||+|++++++.+|+.++++.+. ....+.+..+++|+||++ +.++++.++. |+++....+... ...+....
T Consensus 132 ~g~~~~gv~~v~~~~el~~~~~~~~--~~~~~~~~~~lvqe~i~~~~~e~~v~v~~---~~~~~~~~~~~~~~~~~~~~g 206 (280)
T 1uc8_A 132 IGSWGRLLAXXXXXXXXXXXXXXKE--VLGGFQHQLFYIQEYVEKPGRDIRVFVVG---ERAIAAIYRRSAHWITNTARG 206 (280)
T ss_dssp BCCBCSHHHHHHHHHC--------------CTTTTCEEEEECCCCSSCCEEEEEET---TEEEEEEEC------------
T ss_pred CCCCcccceecccccccchhhhhHh--hhcccCCCcEEEEeccCCCCceEEEEEEC---CEEEEEEEEecCCccccccCC
Confidence 9999999999999999998887641 111223578999999997 6888888763 344443333210 00000111
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcC
Q psy15244 295 IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 295 ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G 374 (1427)
....|. .+++ ++.+.+.++++++|+ |.+++||+++++| +||||+|||++..+ ++.++|+|+.+++++.++|
T Consensus 207 ~~~~p~-~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~~~~g-~~~iEiN~r~g~~~--~~~~~G~~~~~~~~~~~~~ 277 (280)
T 1uc8_A 207 GQAENC-PLTE----EVARLSVKAAEAVGG-GVVAVDLFESERG-LLVNEVNHTMEFKN--SVHTTGVDIPGEILKYAWS 277 (280)
T ss_dssp --CEEC-CCCH----HHHHHHHHHHHHTTC-SEEEEEEEEETTE-EEEEEEETTCCCTT--HHHHHCCCHHHHHHHHHHH
T ss_pred ccccCC-CCCH----HHHHHHHHHHHHhCC-CeEEEEEEEeCCC-eEEEEEeCCCCccc--hheeeccCHHHHHHHHHHh
Confidence 122355 3553 788999999999999 9999999999887 99999999998654 5778999999999999887
Q ss_pred C
Q psy15244 375 K 375 (1427)
Q Consensus 375 ~ 375 (1427)
+
T Consensus 278 ~ 278 (280)
T 1uc8_A 278 L 278 (280)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=276.44 Aligned_cols=231 Identities=16% Similarity=0.152 Sum_probs=182.3
Q ss_pred CCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHH--HHHHHHHh
Q psy15244 130 NVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVD--KVKEFCDE 206 (1427)
Q Consensus 130 ~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~e--ea~~~a~~ 206 (1427)
++|+|+|. .|...|+..++..++..|++++|++++++..+.||..+|++++++|||+|++. .+.+.+ ++.+ ++.
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~-~~~ 183 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYV--LLNEKNRANALD-LMN 183 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCE--EECTTTGGGHHH-HCC
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEE--EEeCCchHHHHH-Hhc
Confidence 68999998 56777888889999999999999999999999999999999999999999986 455555 6666 778
Q ss_pred cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEE-EEEEecccccEEEe-eeec
Q psy15244 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIE-VQILGDKYGDVVHL-YERD 284 (1427)
Q Consensus 207 iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreie-Vqvl~Dg~G~vv~l-~erd 284 (1427)
+|||+||||+.|+||+|+++|++.+||.++++.+.+ .+..++||+||+|.+|++ +.+..+ |+++.. .+..
T Consensus 184 lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~------~~~~vlVEe~I~G~~E~svi~v~v~--g~~~~~~~ei~ 255 (367)
T 2pvp_A 184 FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFE------YSKEVLIEPFIQGVKEYNLAGCKIK--KDFCFSYIEEP 255 (367)
T ss_dssp SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTT------TCSCEEEEECCTTCEEEEEEEEEET--TEEEEEEEEET
T ss_pred cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh------cCCcEEEEeCCCCCceeeEEEEEEC--CEEEEEEEEEe
Confidence 999999999999999999999999999999876542 157899999999439955 333333 443332 2221
Q ss_pred cc--cccccc-----eEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHH
Q psy15244 285 CS--MQRRYQ-----KVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSE 357 (1427)
Q Consensus 285 ~s--~qr~~q-----k~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte 357 (1427)
.. +..... ......|+ .++++..+++.+.+.+++++||+.|.+++||+++ +|++||+|||||++.+.. .
T Consensus 256 ~~~~~~d~~~ky~~g~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~--s 331 (367)
T 2pvp_A 256 NKQEFLDFKQKYLDFSRNKAPKA-SLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVYLNEINPIPGSLAN--Y 331 (367)
T ss_dssp TTTEEECCCCSSCCSCCCSCCCC-CCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE-TTEEEEEEEESSCGGGGG--G
T ss_pred cCCceEcccccccCCCeeEEecC-CCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcc--c
Confidence 00 111111 12245687 5899999999999999999999999999999999 888999999999986421 1
Q ss_pred HHhCCCHHHHHHHHHcCCCC
Q psy15244 358 EITGIDVVQSQIKIAQGKSL 377 (1427)
Q Consensus 358 ~~tGiDLv~~~i~iA~G~~l 377 (1427)
+.. |+.+...++..+.++
T Consensus 332 ~~p--~~~~l~~~li~~~~~ 349 (367)
T 2pvp_A 332 LFD--DFKTTLENLAQSLPK 349 (367)
T ss_dssp GSS--SHHHHHHHHHHHCC-
T ss_pred ccC--CHHHHHHHHHhCccc
Confidence 111 888888888877654
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=263.96 Aligned_cols=263 Identities=17% Similarity=0.209 Sum_probs=187.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCcc-CccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKF-SAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~-s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
..||||+|+| .+..++++++++|+++++++...+.. ......+|+.+.++ .|.+ +. +++ .+|+|+
T Consensus 2 ~m~Ililg~g-~~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~d-~~---l~~--~~d~i~ 67 (334)
T 2r85_A 2 KVRIATYASH-SALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEE-------KYPE-EE---LLN--LNAVVV 67 (334)
T ss_dssp CSEEEEESST-THHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECS-------SCCH-HH---HHH--TTEEEC
T ss_pred ceEEEEECCh-hHHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecC-------CcCh-HH---hcc--cCCEEE
Confidence 3489999999 89999999999999999997765421 11345677776643 1322 22 333 358888
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEee
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKA 215 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP 215 (1427)
|..++.. ....+.++..|++++ |+++++..+.||..++++++++|||+|++ +.+.+ +++||+||||
T Consensus 68 ~~~e~~~--~~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~----~~~~~-------~l~~P~vvKP 133 (334)
T 2r85_A 68 PTGSFVA--HLGIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV----YEDPD-------DIEKPVIVKP 133 (334)
T ss_dssp CCTTHHH--HHCHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB----CSCGG-------GCCSCEEEEE
T ss_pred ECcchhh--hhHHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc----cCChH-------HcCCCEEEEe
Confidence 7754321 122445688999976 56799999999999999999999999996 34544 3579999999
Q ss_pred cCCCCCcCeEEecCHHHHHHHHHHHHHHHHHcc-CCCcEEEEeeccCCceEEEEEEeccccc-EEEee-eeccccc----
Q psy15244 216 AFGGGGRGMRMVANKDAIEENFKRAQSEALASF-GKDDMLVEKYIDRPRHIEVQILGDKYGD-VVHLY-ERDCSMQ---- 288 (1427)
Q Consensus 216 ~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~f-g~~~vlVEeyIeggreieVqvl~Dg~G~-vv~l~-erd~s~q---- 288 (1427)
..|+||+||++|++.+|+..+++.+.... .| ....+++|+||+ |.++++.++.+..++ +-.+. ...+..+
T Consensus 134 ~~g~~s~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~lvee~i~-G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~ 210 (334)
T 2r85_A 134 HGAKGGKGYFLAKDPEDFWRKAEKFLGIK--RKEDLKNIQIQEYVL-GVPVYPHYFYSKVREELELMSIDRRYESNVDAI 210 (334)
T ss_dssp CC----TTCEEESSHHHHHHHHHHHHCCC--SGGGCCSEEEEECCC-CEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGG
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHhhc--ccCCCCcEEEEeccC-CceeEEEEeecCcCceeeeeeeccEEEeccCcc
Confidence 99999999999999999999887654210 11 137899999999 778887766652222 11110 1001000
Q ss_pred --------------cccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCC
Q psy15244 289 --------------RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRL 349 (1427)
Q Consensus 289 --------------r~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl 349 (1427)
.......+. |+ .++++..+++.+.+.+++++| ++.|.+++||+++++|++||||||||+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~~-p~-~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~~viEiN~R~ 288 (334)
T 2r85_A 211 GRIPAKDQLEFDMDITYTVIGNI-PI-VLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARI 288 (334)
T ss_dssp GGSCHHHHTTSCCCCCEEEEEEE-EC-CCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEEEEECSC
T ss_pred cccccccccccccCCceeeeCCC-Cc-ccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCEEEEEEeCCc
Confidence 001122222 77 488888999999999999999 899999999999988899999999999
Q ss_pred CCc
Q psy15244 350 QVE 352 (1427)
Q Consensus 350 ~ge 352 (1427)
+++
T Consensus 289 g~~ 291 (334)
T 2r85_A 289 VAG 291 (334)
T ss_dssp CGG
T ss_pred CCC
Confidence 985
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=260.38 Aligned_cols=267 Identities=13% Similarity=0.156 Sum_probs=192.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCcc-CccccccceEEEcCCCCCcccCCCCH--HHHHHHHHhcCCCEE
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKF-SAHRTKVDQAFLVGKGMPPVAAYLNI--PEIICIAKNNNVDAI 134 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~-s~~~~~aDe~~~i~~~~~~~~~yldi--~~Ii~ia~~~~vDaI 134 (1427)
.+|+|+|+| .++.++++|+++|+++++++..++.. ......||+.+.++ .|.|+ +++++.+++.. +.|
T Consensus 19 ~~I~ilGs~-l~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d-------~~~d~~~~~~l~~l~~~~-~vV 89 (361)
T 2r7k_A 19 ITIATLGSH-TSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVD-------NFSDIKNEEIQEKLRELN-SIV 89 (361)
T ss_dssp CEEEEESST-THHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECS-------SGGGGGSHHHHHHHHHTT-EEE
T ss_pred CEEEEECcH-HHHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECC-------CcccccHHHHHHHHHHcC-CEE
Confidence 469999999 89999999999999999998776521 11556789988754 24442 55666666554 555
Q ss_pred EeCCCcccccHH---HHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcE
Q psy15244 135 HPGYGFLSERED---FAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPV 211 (1427)
Q Consensus 135 ~pg~gflsE~~~---~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPv 211 (1427)
.| ++ ++.. +..+.++.|++++| +..+++...||..+|++|+++|||+|++ +.+.+++ +||+
T Consensus 90 ~p--e~--~~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp~~----~~~~~e~-------~~Pv 153 (361)
T 2r7k_A 90 VP--HG--SFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKK----YESPEDI-------DGTV 153 (361)
T ss_dssp CC--BH--HHHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCCCE----ESSGGGC-------CSCE
T ss_pred Ee--Cc--hhhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCCCE----eCCHHHc-------CCCE
Confidence 32 21 2222 22333489999887 8899999999999999999999999975 3555543 6999
Q ss_pred EEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC---CCcEEEEeeccCCceEEEEEEeccc-c--cEEEeeeec-
Q psy15244 212 ILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG---KDDMLVEKYIDRPRHIEVQILGDKY-G--DVVHLYERD- 284 (1427)
Q Consensus 212 VVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg---~~~vlVEeyIeggreieVqvl~Dg~-G--~vv~l~erd- 284 (1427)
||||..++||+|+++++|.+|+.++++.+... ..|+ +.+++|||||+ |.++++..+..-- + .++.+..|-
T Consensus 154 VVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~--~~~~~~~~~~viIEEfl~-G~e~s~~~f~~~~~~~~e~~~id~r~~ 230 (361)
T 2r7k_A 154 IVKFPGARGGRGYFIASSTEEFYKKAEDLKKR--GILTDEDIANAHIEEYVV-GTNFCIHYFYSPLKDEVELLGMDKRYE 230 (361)
T ss_dssp EEECSCCCC---EEEESSHHHHHHHHHHHHHT--TSCCHHHHHHCEEEECCC-SEEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred EEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--cccccCCCCeEEEEeccc-eEEeeEEEEecccCCeeEEEEecceEE
Confidence 99999999999999999999999999876532 1122 14799999999 6666765554321 2 222222221
Q ss_pred ------ccc----------ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc------CCCCeEEEEEEEcCCCcEEE
Q psy15244 285 ------CSM----------QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL------GYSNAGTVEFLLDKDDNFYF 342 (1427)
Q Consensus 285 ------~s~----------qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al------g~~G~~~VEflvd~dG~~yf 342 (1427)
|.+ ...+....+ .|+ .++++..+++.+.+.++++++ ++.|++++||+++++|++|+
T Consensus 231 ~~~dgi~~~~~~~~~~~~~~p~~v~~G~-~Pa-~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V 308 (361)
T 2r7k_A 231 SNIDGLVRIPAKDQLEMNINPSYVITGN-IPV-VIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVV 308 (361)
T ss_dssp EEHHHHTTSCHHHHHTCCCCCCEEEEEE-EEC-CCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEE
T ss_pred eecccceecchhhhhcccCCCceEEecC-cCC-cCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEE
Confidence 111 011222333 288 488899999999999999999 89999999999998889999
Q ss_pred EeeCCCCCCchh
Q psy15244 343 IEVNPRLQVEHT 354 (1427)
Q Consensus 343 IEINpRl~ge~~ 354 (1427)
+|||||++|+..
T Consensus 309 ~EIapR~gGg~~ 320 (361)
T 2r7k_A 309 FEMSARVDGGTN 320 (361)
T ss_dssp EEEESSBCGGGG
T ss_pred EEEcCCCCCCcc
Confidence 999999999733
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=236.27 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=164.9
Q ss_pred HHHHHHHHHhcCCCEEEe-CCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCH
Q psy15244 119 IPEIICIAKNNNVDAIHP-GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDV 197 (1427)
Q Consensus 119 i~~Ii~ia~~~~vDaI~p-g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~ 197 (1427)
.+.+.+++++ +|.+++ .+|.......+.+.++..| +++|+++++++.+.||..+++++++ |||+|++. +
T Consensus 60 ~~~l~~~~~~--~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~---~--- 129 (305)
T 3df7_A 60 MDSMEKYLEK--SDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTS---L--- 129 (305)
T ss_dssp GGGHHHHHTT--CSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEE---S---
T ss_pred HHHHHHHHHh--cCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEe---c---
Confidence 4577777766 555554 3443333345667777777 7899999999999999999999999 99999985 2
Q ss_pred HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccE
Q psy15244 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 198 eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~v 277 (1427)
.+++||+||||..|+||+|++++++ .+..+++|+||+ |+|++|.++.++ .+
T Consensus 130 -------~~~~~P~vvKP~~g~gs~Gv~~v~~-------------------~~~~~lvEe~I~-G~e~sv~v~~g~--~~ 180 (305)
T 3df7_A 130 -------RPLDCKFIIKPRTACAGEGIGFSDE-------------------VPDGHIAQEFIE-GINLSVSLAVGE--DV 180 (305)
T ss_dssp -------SCCSSSEEEEESSCC----CBCCSS-------------------CCTTEEEEECCC-SEEEEEEEEESS--SE
T ss_pred -------ccCCCCEEEEeCCCCCCCCEEEEec-------------------CCCCEEEEeccC-CcEEEEEEEeCC--eE
Confidence 2679999999999999999999998 257899999999 899999999853 34
Q ss_pred EEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHH
Q psy15244 278 VHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-GYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356 (1427)
Q Consensus 278 v~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-g~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vt 356 (1427)
..+.... .....+.......|+ .++++..+++.+.+.++++++ |+.|.+++||+++ |++||+|||||++++....
T Consensus 181 ~~~~~~~-~~~~~~~~~g~~~p~-~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNpR~~~~~~~~ 256 (305)
T 3df7_A 181 KCLSVNE-QIINNFRYAGAVVPA-RISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINARLTTPVVAF 256 (305)
T ss_dssp EEEEEEE-EEEETTEEEEEEESC-CCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEESSCCGGGGGH
T ss_pred EEEEEee-EeccCceeccccccC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcCCCCCCHHHH
Confidence 4333211 111112233456787 589999999999999999999 9999999999996 6699999999999987777
Q ss_pred HHHhCCCHHHHHHHH
Q psy15244 357 EEITGIDVVQSQIKI 371 (1427)
Q Consensus 357 e~~tGiDLv~~~i~i 371 (1427)
+.++|+|+.++++++
T Consensus 257 ~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 257 SRAYGASVADLLAGG 271 (305)
T ss_dssp HHHHSCCHHHHHTTC
T ss_pred HHHHCCCHHHHHHhc
Confidence 889999999999987
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-23 Score=241.96 Aligned_cols=250 Identities=14% Similarity=0.134 Sum_probs=171.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCcc-CccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKF-SAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~-s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
+|.++|+| .++.++++|+++|++|++++..++.. .+....||+.+.++ .|.| +++ ..|.|.|-
T Consensus 4 ~I~~lGsg-l~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~-------~~~d------l~~--~~dvitpe 67 (320)
T 2pbz_A 4 IVSTIASH-SSLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAE-------EMTS------ILN--DDGIVVPH 67 (320)
T ss_dssp CEEEESST-THHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECS-------CSCC------TTC--CSSBCCCB
T ss_pred EEEEEcCH-hHHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECC-------cHHH------HHh--cCCEEEec
Confidence 59999999 99999999999999999998876521 12667899998864 2444 222 34777654
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecC
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAF 217 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~ 217 (1427)
.++.. ....+.|++.|++++ |+++++....||...|++|+++|||+|+++ . .+++ +++||+||||..
T Consensus 68 ~e~v~--~~~l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~--~---~ee~-----~i~~PviVKp~~ 134 (320)
T 2pbz_A 68 GSFVA--YLGIEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVV--E---PEDA-----KPDELYFVRIEG 134 (320)
T ss_dssp TTHHH--HSCHHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBC--C---SCCC-----CSSCCEEEECC-
T ss_pred ccchh--HHHHHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCee--C---HhHc-----CcCCcEEEEECC
Confidence 43221 112345678999865 778999999999999999999999999986 1 2232 589999999999
Q ss_pred CCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEec-ccccEEEeeeec-ccc--------
Q psy15244 218 GGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGD-KYGDVVHLYERD-CSM-------- 287 (1427)
Q Consensus 218 GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~D-g~G~vv~l~erd-~s~-------- 287 (1427)
|+||+|+++++| +||..+++.+ + .+++|||||+ +.++++.++.+ -.|++..++.++ +..
T Consensus 135 g~ggkG~~~v~~-eel~~~~~~~--------~-~~~IiEEfI~-g~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~~~~p 203 (320)
T 2pbz_A 135 PRGGSGHFIVEG-SELEERLSTL--------E-EPYRVERFIP-GVYLYVHFFYSPILERLELLGVDERVLIADGNARWP 203 (320)
T ss_dssp -----------C-EECSCCCC-------------CCEEEECCC-SCEEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSC
T ss_pred CCCCCCEEEECh-HHHHHHHHhc--------C-CCEEEEeeec-eEecceeEEeccccCceeEEEecceEEEECCeeecc
Confidence 999999999999 9998766443 1 4799999999 44456656654 234444433211 111
Q ss_pred --ccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc------CCCCeEEEEEEEcCCCcEEEEeeCCCCCCc
Q psy15244 288 --QRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL------GYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 288 --qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al------g~~G~~~VEflvd~dG~~yfIEINpRl~ge 352 (1427)
.+.+....+. |+ .++++..+++.+.+.++++++ |+.|++++| ++++|++|++|||||++|+
T Consensus 204 ~~~~~~~~~G~~-P~-~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE--~~~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 204 VKPLPYTIVGNR-AI-ALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH--FAYDGSFKAIGIASRIDGG 272 (320)
T ss_dssp CSCCCCCEEEEE-EC-EECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE--EECSSSCEEEEEESSBCSG
T ss_pred cCCCceeeecCC-CC-ccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE--EcCCCcEEEEEecCCCCCC
Confidence 1111222222 77 478888899999999999999 999999999 5777889999999999986
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=211.42 Aligned_cols=287 Identities=12% Similarity=0.063 Sum_probs=186.0
Q ss_pred CEEEEEcCC--------HHHHHHHHHHHHcCCEEEEEecCCCccCccccccce-EEEcCCCCCcccCCCC--HHHHHHHH
Q psy15244 58 EKILIANRS--------EVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQ-AFLVGKGMPPVAAYLN--IPEIICIA 126 (1427)
Q Consensus 58 kkVLIagrG--------eia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe-~~~i~~~~~~~~~yld--i~~Ii~ia 126 (1427)
+||+|+..+ ..+..++++++++|++++.++............++. .+.+. + .. ..+.. .+.++
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~--- 75 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK-Q-NY-EEWFSFVGEQDL--- 75 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEEC-S-CS-SCCEEEEEEEEE---
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEec-c-Cc-ccceeccCcccc---
Confidence 478887765 346789999999999999887653321111111221 11121 0 00 11111 00001
Q ss_pred HhcCCCEEEeCCCccc--cc---HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHH
Q psy15244 127 KNNNVDAIHPGYGFLS--ER---EDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVK 201 (1427)
Q Consensus 127 ~~~~vDaI~pg~gfls--E~---~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~ 201 (1427)
...++|+|++..+.-. |. ..+.+.++..|++++ ++++++..+.||..++++++ |+|++. .+.+.+++.
T Consensus 76 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~--~~~~~~~~~ 148 (316)
T 1gsa_A 76 PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETL--VTRNKAQLK 148 (316)
T ss_dssp EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEE--EESCHHHHH
T ss_pred ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeE--EeCCHHHHH
Confidence 1135899999754221 12 256677778999876 78999999999999999887 999986 678899999
Q ss_pred HHHHhcCCcEEEeecCCCCCcCeEEec-CHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC--CceEEEEEEecccccEE
Q psy15244 202 EFCDEVEFPVILKAAFGGGGRGMRMVA-NKDAIEENFKRAQSEALASFGKDDMLVEKYIDR--PRHIEVQILGDKYGDVV 278 (1427)
Q Consensus 202 ~~a~~iGyPvVVKP~~GgGGrGV~iV~-s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg--greieVqvl~Dg~G~vv 278 (1427)
++++++| |+|+||..|+||+||++++ +.+++..+++... ..+...+++|+||++ +.++++.++ + |+++
T Consensus 149 ~~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~-----~~~~~~~lvqe~i~~~~~~~~~v~~~-~--g~~~ 219 (316)
T 1gsa_A 149 AFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLT-----EHGTRYCMAQNYLPAIKDGDKRVLVV-D--GEPV 219 (316)
T ss_dssp HHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHT-----TTTTSCEEEEECCGGGGGCEEEEEEE-T--TEEC
T ss_pred HHHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHH-----hcCCceEEEecccCCCCCCCEEEEEE-C--CEEe
Confidence 9999999 9999999999999999998 8889887775431 123468999999996 455555554 2 4444
Q ss_pred E-eeeeccc---cccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCchh
Q psy15244 279 H-LYERDCS---MQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHT 354 (1427)
Q Consensus 279 ~-l~erd~s---~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge~~ 354 (1427)
. ...|... ...+...-....|. .++++. .++...+.+.++++|+ +.+.+||+ |. ||||||+|.+++..
T Consensus 220 ~~~~~r~~~~~~~~~~~~~gg~~~~~-~~~~~~-~~~a~~~~~~l~~~g~-~~~~vD~~----g~-~~iEvN~r~~~~~~ 291 (316)
T 1gsa_A 220 PYCLARIPQGGETRGNLAAGGRGEPR-PLTESD-WKIARQIGPTLKEKGL-IFVGLDII----GD-RLTEINVTSPTCIR 291 (316)
T ss_dssp SEEEEEECCSSCSCCCGGGTCEEEEE-ECCHHH-HHHHHHHHHHHHHTTC-CEEEEEEE----TT-EEEEEECSSCCCHH
T ss_pred eeEEEEeCCCCCceeEEccCCccccC-CCCHHH-HHHHHHHHHHHHhCCC-cEEEEEec----CC-EEEEEcCCCCcchH
Confidence 3 3333211 11110000112344 355433 2333334444445677 56789998 54 89999999765666
Q ss_pred HHHHHhCCCHHHHHHHHHcC
Q psy15244 355 LSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 355 vte~~tGiDLv~~~i~iA~G 374 (1427)
.++..+|+|+.+..++...+
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 292 EIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp HHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHhhCcCHHHHHHHHHHH
Confidence 77788999999999887654
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=230.00 Aligned_cols=240 Identities=18% Similarity=0.196 Sum_probs=180.8
Q ss_pred CCHHHHHHHHHhcCCCEEEeCCCcccccHHHHHHHHHC-------CCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q psy15244 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGA-------GLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPG 189 (1427)
Q Consensus 117 ldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~-------Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~ 189 (1427)
.+.+.|+++|++.++|+++.+ ++..|++++... |+...||+..++..++||..+|++|+++|||+|++
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg-----~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~ 507 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILD-----ENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQS 507 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-----TTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCE
T ss_pred CCHHHHHHHHHHhCCCEEEEC-----CCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCE
Confidence 457899999999999999755 333344333333 34344677899999999999999999999999999
Q ss_pred ccccCCCHHHHHHHH-HhcCCcEEEeecCCCCCcCeEEe----cCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCce
Q psy15244 190 TTEPVTDVDKVKEFC-DEVEFPVILKAAFGGGGRGMRMV----ANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRH 264 (1427)
Q Consensus 190 ~~~~v~s~eea~~~a-~~iGyPvVVKP~~GgGGrGV~iV----~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggre 264 (1427)
. .+.+.+++.+++ +.+|||+||||..|+||+||+++ ++.+++.++++.+... +..++||+||+ |+|
T Consensus 508 ~--~~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~------~~~vlVEefI~-G~E 578 (757)
T 3ln7_A 508 V--EFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE------DKEVMVEDYLV-GTE 578 (757)
T ss_dssp E--EESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH------CSSEEEEECCC-SEE
T ss_pred E--EECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc------CCcEEEEEcCC-CcE
Confidence 7 688999987776 78999999999999999999999 8999999999877543 56899999999 799
Q ss_pred EEEEEEecccccEEEeeeecccc-------------------ccc----------------------------------c
Q psy15244 265 IEVQILGDKYGDVVHLYERDCSM-------------------QRR----------------------------------Y 291 (1427)
Q Consensus 265 ieVqvl~Dg~G~vv~l~erd~s~-------------------qr~----------------------------------~ 291 (1427)
++|+++++ +++...+|.... .+| .
T Consensus 579 i~v~Vlgg---kvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~G 655 (757)
T 3ln7_A 579 YRFFVLGD---ETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKD 655 (757)
T ss_dssp EEEEEETT---EEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSS
T ss_pred EEEEEECC---EEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCC
Confidence 99999854 577666653210 000 0
Q ss_pred ceEEE-----E---ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC--------CCcEEEEeeCCCCCCc-hh
Q psy15244 292 QKVIQ-----I---APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK--------DDNFYFIEVNPRLQVE-HT 354 (1427)
Q Consensus 292 qk~ie-----~---aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~--------dG~~yfIEINpRl~ge-~~ 354 (1427)
+.+.- . +-+...++++.+++.+.|.++++++|+. .+.||++.++ .+.+.+||+|++++-. |.
T Consensus 656 e~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~h~ 734 (757)
T 3ln7_A 656 QLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMHI 734 (757)
T ss_dssp CEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHHHH
T ss_pred CEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCCCeEEEEEcCCcchhhhh
Confidence 00000 0 0011234456678889999999999996 8889999872 3468999999999844 33
Q ss_pred HHHHHhCCCHHHHHHHHHcC
Q psy15244 355 LSEEITGIDVVQSQIKIAQG 374 (1427)
Q Consensus 355 vte~~tGiDLv~~~i~iA~G 374 (1427)
.....+|.|+.+..+.....
T Consensus 735 ~p~~g~~~~v~~~ii~~lfp 754 (757)
T 3ln7_A 735 FPYAGKSRRLTQNVIKMLFP 754 (757)
T ss_dssp SCSSSCCCCCHHHHHHHHCT
T ss_pred ccccCCCCchHHHHHHHhcC
Confidence 33345799999998887653
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=201.97 Aligned_cols=242 Identities=14% Similarity=0.190 Sum_probs=167.9
Q ss_pred CCEEEEEcCC-HHHHHHHHHHHHcCCEE--EEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 57 MEKILIANRS-EVAIRVARACNEMGIKS--VGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 57 ~kkVLIagrG-eia~riiraa~elGi~~--vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
++||+|+... .....++++++++|+++ +.++.+.. +. +.. ..+|+
T Consensus 11 ~m~i~il~~~~~~s~~l~~al~~~G~~v~~~~~d~~~~--------------~~--------~~~----------~~~d~ 58 (324)
T 1z2n_X 11 TVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLS--------------TE--------LPD----------KEPNA 58 (324)
T ss_dssp EEEEEEECCHHHHHHHBSSCCSEEEEEETTEEEEEEEE--------------SS--------CCS----------SCCSE
T ss_pred cEEEEEEEchhhhhhhHHHHHHhcCcEEEEEEecCCCC--------------cc--------ccC----------CCceE
Confidence 3478888742 23337788899999998 88865210 00 000 15788
Q ss_pred EEeCCCcc-cccHHHHHHHHH--CCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhc--C
Q psy15244 134 IHPGYGFL-SEREDFAKAVIG--AGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEV--E 208 (1427)
Q Consensus 134 I~pg~gfl-sE~~~~a~~~e~--~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~i--G 208 (1427)
|++..+.. .+.....+.++. .|+++ +++++++..+.||..++++++++|||+|++. .+.+.+++.+++++. +
T Consensus 59 v~~~~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~--~~~~~~~~~~~~~~~~~~ 135 (324)
T 1z2n_X 59 IITKRTHPVGKMADEMRKYEKDHPKVLF-LESSAIHDMMSSREEINALLIKNNIPIPNSF--SVKSKEEVIQLLQSKQLI 135 (324)
T ss_dssp EEECCSCSSSHHHHHHHHHHHHCTTSEE-ETCHHHHHHHTBHHHHHHHHHHTTCCCSCEE--EESSHHHHHHHHHTTCSC
T ss_pred EEEeccchHHHHHHHHHHHHHhCCCCeE-eCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHHcCCC
Confidence 88864321 121222333333 78885 5899999999999999999999999999986 678888988888775 4
Q ss_pred CcEEEeecCCCCC---cCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC-CceEEEEEEecccccEEEeeeec
Q psy15244 209 FPVILKAAFGGGG---RGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDR-PRHIEVQILGDKYGDVVHLYERD 284 (1427)
Q Consensus 209 yPvVVKP~~GgGG---rGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg-greieVqvl~Dg~G~vv~l~erd 284 (1427)
||+|+||..|+|| +|++++++.++|.. . +.++++|+||++ ++++++.++++ .++....+.
T Consensus 136 ~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~------------~-~~~~lvqe~i~~~g~~~~v~v~g~---~~~~~~~~~ 199 (324)
T 1z2n_X 136 LPFIVKPENAQGTFNAHQMKIVLEQEGIDD------------I-HFPCLCQHYINHNNKIVKVFCIGN---TLKWQTRTS 199 (324)
T ss_dssp SSEEEEESBCSSSSGGGEEEEECSGGGGTT------------C-CSSEEEEECCCCTTCEEEEEEETT---EEEEEEECC
T ss_pred CCEEEeeCCCCCCccceeeEEEeCHHHHhh------------c-CCCEEEEEccCCCCcEEEEEEECC---EEEEEEecC
Confidence 9999999999999 99999999888652 1 478999999985 57888877643 344432221
Q ss_pred cc-ccc-----------------------------------ccceEEEEccCCCCCHHHH-HHHHHHHHHHHHHcCCCCe
Q psy15244 285 CS-MQR-----------------------------------RYQKVIQIAPAQDMSVSVR-DAITETSVRLAKSLGYSNA 327 (1427)
Q Consensus 285 ~s-~qr-----------------------------------~~qk~ie~aPa~~l~~e~~-~~l~~~a~~l~~alg~~G~ 327 (1427)
.. +.. ....-....+. .+.... +++.+.|.++++++|+. .
T Consensus 200 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~a~~~~~~lg~~-~ 276 (324)
T 1z2n_X 200 LPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPI--LLNLTSEAEMRDLAYKVRCALGVQ-L 276 (324)
T ss_dssp CCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTT--TTTSCCHHHHHHHHHHHHHHHTCS-E
T ss_pred cccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCc--cccCCCHHHHHHHHHHHHHHhCCc-E
Confidence 10 000 00000000111 122222 68999999999999997 7
Q ss_pred EEEEEEEc-CCCcEEEEeeCCCCCCc
Q psy15244 328 GTVEFLLD-KDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 328 ~~VEflvd-~dG~~yfIEINpRl~ge 352 (1427)
+++||+++ ++|++||||||||++..
T Consensus 277 ~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 277 CGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp EEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred EeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 89999998 46899999999998743
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=209.94 Aligned_cols=175 Identities=23% Similarity=0.389 Sum_probs=131.3
Q ss_pred Cccc-cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhc
Q psy15244 1121 EPFK-MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDE 1199 (1427)
Q Consensus 1121 ~~~d-~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 1199 (1427)
.+.| +.++|||++..+|.+.+++||+++.|||+.||.||+.||++. +..++
T Consensus 543 ~~ed~l~~~~~p~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~-v~i~~--------------------------- 594 (718)
T 3bg3_A 543 TPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFE-VELER--------------------------- 594 (718)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHSCCCTTSCHHHHHHCCCBTCEEE-EECTT---------------------------
T ss_pred CHHHHHHHHhCchhHHHHHHHHHhcCCcccCcchhhhcCCCcCceee-eeccc---------------------------
Confidence 3345 778899999999999999999999999999999999999986 44444
Q ss_pred cCCCCCCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhh
Q psy15244 1200 FGPVDKLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAF 1279 (1427)
Q Consensus 1200 ~~~~~~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 1279 (1427)
|.++.+.+ ..+. ..+.++.|+++|++||+.+.+++.+...-... ...+
T Consensus 595 ------------------Gk~~~i~l-----~~i~------~~~~~g~~~~~vevnG~~~~v~v~~~~~~~~~---~~~~ 642 (718)
T 3bg3_A 595 ------------------GKTLHIKA-----LAVS------DLNRAGQRQVFFELNGQLRSILVKDTQAMKEM---HFHP 642 (718)
T ss_dssp ------------------SCEEEEEE-----EEEE------EECTTSEEEEEEESSSSEEEEEEECGGGTCC--------
T ss_pred ------------------CceeEEEe-----cccC------CcccCCcEEEEEEECCEEEEEEEeccCccccc---cccc
Confidence 88888855 2333 23457889999999999999999887532111 1122
Q ss_pred hcccccceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCc
Q psy15244 1280 LRLKSERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGE 1359 (1427)
Q Consensus 1280 ~~~~s~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~ 1359 (1427)
+........|.++|.|...+|.++.|+.+ .. |..-..++- ......
T Consensus 643 ~a~~~~~~~v~ap~~G~V~~v~V~~Gd~V-----------~~-Gq~L~~iEa----------------------mKme~~ 688 (718)
T 3bg3_A 643 KALKDVKGQIGAPMPGKVIDIKVVAGAKV-----------AK-GQPLCVLSA----------------------MKMETV 688 (718)
T ss_dssp CCCCCSSSCEECSSCEEEEEECSCTTCCB-----------CT-TCCCEEEES----------------------SSCEEE
T ss_pred cCCCCCCceEeCCCCeEEEEEEeCCCCee-----------CC-CCEEEEEec----------------------ccceeE
Confidence 33334456799999999999999999987 22 322222220 012457
Q ss_pred eecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1360 V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
|.||..|+|.++.|++||.|..||+|++||
T Consensus 689 I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 689 VTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp ECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred EecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 999999999999999999999999999874
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=218.15 Aligned_cols=172 Identities=18% Similarity=0.333 Sum_probs=136.8
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+.++|||++..+|.+.+++||+++.|||++||.|+++||++. ++.+.
T Consensus 976 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------------------------- 1022 (1150)
T 3hbl_A 976 ISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVE-IEIDK-------------------------------- 1022 (1150)
T ss_dssp HHHHHSHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEE-EEEET--------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHhcCCcccCCchhhhcCCCCCceEE-EEccC--------------------------------
Confidence 677899999999999999999999999999999999999986 44444
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
|+++.+.+. .+. ..+.++.|++||++||+.+.+.+.+........ ..++...+
T Consensus 1023 -------------g~~~~i~l~-----~~~------~~~~~g~~~~~~e~nG~~~~v~v~~~~~~~~~~---~~~~~~~~ 1075 (1150)
T 3hbl_A 1023 -------------GKRLIIKLE-----TIS------EPDENGNRTIYYAMNGQARRIYIKDENVHTNAN---VKPKADKS 1075 (1150)
T ss_dssp -------------TEEEEEEEE-----EEC------CCCTTSEEEEEEEETTEEEEEEEECCCSSSCCC---CCCBCCTT
T ss_pred -------------CcEEEEEec-----ccC------CCCCCCceEEEEEECCeEEEEeccccccccccc---ccccCCCC
Confidence 888888553 444 355679999999999999999999886543211 23444456
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....|.++|.|..++|.+++|+.+ .. |..-+.+|- . .....|.||.
T Consensus 1076 ~~~~v~ap~~G~v~~~~v~~Gd~V-----------~~-G~~l~~iea---------------------m-K~~~~i~ap~ 1121 (1150)
T 3hbl_A 1076 NPSHIGAQMPGSVTEVKVSVGETV-----------KA-NQPLLITEA---------------------M-KMETTIQAPF 1121 (1150)
T ss_dssp CSSEEECSSSEEEEEECCCTTCEE-----------CT-TCEEEEEES---------------------S-SCEEEEECSS
T ss_pred CCceeecCceEEEEEEEeCCCCEE-----------CC-CCEEEEEEe---------------------c-cceeEEecCC
Confidence 667899999999999999999997 23 332222221 1 1346799999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
.|+|.+++|++||.|+.||+|++|+.
T Consensus 1122 ~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1122 DGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp SEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 99999999999999999999999973
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=186.52 Aligned_cols=177 Identities=12% Similarity=0.195 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCC-----CCCcCeEE-ecCHHHHHHHHHHHHHH
Q psy15244 170 GDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFG-----GGGRGMRM-VANKDAIEENFKRAQSE 243 (1427)
Q Consensus 170 ~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~G-----gGGrGV~i-V~s~eeL~~a~~~a~~e 243 (1427)
-||..+|++++++|||+|++. .+.+.+++.++++++|||+||||..+ ++|.|+++ ++|.+|+.++++.+...
T Consensus 20 l~k~~~k~ll~~~GIp~p~~~--~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~ 97 (238)
T 1wr2_A 20 MVEYEAKQVLKAYGLPVPEEK--LAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHEN 97 (238)
T ss_dssp ECHHHHHHHHHTTTCCCCCCE--EESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHh
Confidence 499999999999999999997 68899999999999999999999999 77889998 79999999999998877
Q ss_pred HHHccC---CCcEEEEeeccCCceEEEEEEecc-cccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHH
Q psy15244 244 ALASFG---KDDMLVEKYIDRPRHIEVQILGDK-YGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLA 319 (1427)
Q Consensus 244 a~~~fg---~~~vlVEeyIeggreieVqvl~Dg-~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~ 319 (1427)
....++ ...++||+||++++|+++.++.|. .|.++.++.....+...........| ++++..++|.+.+.++.
T Consensus 98 ~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~P---l~~~~~~~~~~~~~~~~ 174 (238)
T 1wr2_A 98 AKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVP---ITEKDARKMIQEIKAYP 174 (238)
T ss_dssp HHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEESS---CCHHHHHHHHHTSTTHH
T ss_pred hhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecCC---CCHHHHHHHHHHHHHHH
Confidence 655444 368999999998999999999997 67777665421122111122333334 89999999999999999
Q ss_pred HHcCCCCeEEEEE-------------EEcCCCcEEEEeeCCCCCC
Q psy15244 320 KSLGYSNAGTVEF-------------LLDKDDNFYFIEVNPRLQV 351 (1427)
Q Consensus 320 ~alg~~G~~~VEf-------------lvd~dG~~yfIEINpRl~g 351 (1427)
..+||+|...+++ +.+.+++++++||||++-.
T Consensus 175 ~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~ 219 (238)
T 1wr2_A 175 ILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVY 219 (238)
T ss_dssp HHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEC
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEe
Confidence 9999999755552 2233334999999998753
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-18 Score=215.35 Aligned_cols=241 Identities=17% Similarity=0.206 Sum_probs=174.2
Q ss_pred CHHHHHHHHHhcCCCEEEeC--CCcccccHHHHHH-HHHCCCceeCCC-HHHHHHhCCHHHHHHHHHhCCCCCCCCcccc
Q psy15244 118 NIPEIICIAKNNNVDAIHPG--YGFLSEREDFAKA-VIGAGLEFIGPA-PNVLKTLGDKVLARDAALKADVPIIPGTTEP 193 (1427)
Q Consensus 118 di~~Ii~ia~~~~vDaI~pg--~gflsE~~~~a~~-~e~~Gi~fiGps-~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~ 193 (1427)
+.+.|++.|++.|+++++.+ .+++......... +...++ .|++ ..++..++||..+|++++++|||+|++. .
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g~i--tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~--~ 504 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGNM--TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGD--E 504 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETTTB--CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCC--C
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecCCe--eCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEE--E
Confidence 46899999999999997755 4454333211101 101223 3444 4466777899999999999999999997 6
Q ss_pred CCCHHHHHHHH-HhcCCcEEEeecCCCCCcCeEEec---CHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEE
Q psy15244 194 VTDVDKVKEFC-DEVEFPVILKAAFGGGGRGMRMVA---NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQI 269 (1427)
Q Consensus 194 v~s~eea~~~a-~~iGyPvVVKP~~GgGGrGV~iV~---s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqv 269 (1427)
+.+.+++.+++ +.+|||+||||..|++|+||++++ +.+++.++++.+... +..++||+||+ |+|++|.+
T Consensus 505 ~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~------~~~vlVEefI~-G~E~~v~V 577 (750)
T 3ln6_A 505 FTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE------DSAILVEEYIE-GTEYRFFV 577 (750)
T ss_dssp EETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH------CSEEEEEECCC-SEEEEEEE
T ss_pred ECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh------CCcEEEEeccC-CCEEEEEE
Confidence 78888887777 778999999999999999999998 999999999877543 57899999999 89999999
Q ss_pred EecccccEEEeeeecccc------------------c-cc---cc------------------------------eEEEE
Q psy15244 270 LGDKYGDVVHLYERDCSM------------------Q-RR---YQ------------------------------KVIQI 297 (1427)
Q Consensus 270 l~Dg~G~vv~l~erd~s~------------------q-r~---~q------------------------------k~ie~ 297 (1427)
+++ +++...+|.... . ++ |. +.+..
T Consensus 578 vgg---~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L 654 (750)
T 3ln6_A 578 LEG---DCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIEL 654 (750)
T ss_dssp ETT---EEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEES
T ss_pred ECC---EEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEE
Confidence 854 566554442211 0 00 00 00000
Q ss_pred ccC---------CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC--------CCcEEEEeeCCCCCCc-hhHHHHH
Q psy15244 298 APA---------QDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK--------DDNFYFIEVNPRLQVE-HTLSEEI 359 (1427)
Q Consensus 298 aPa---------~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~--------dG~~yfIEINpRl~ge-~~vte~~ 359 (1427)
... ...++++.+++.+.|.++++++|+. .+.||++.++ .|.+++||+|++++-. |......
T Consensus 655 ~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~~h~~p~~g 733 (750)
T 3ln6_A 655 RRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIELNFNPLMYMHTYCQEG 733 (750)
T ss_dssp CSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCHHHHSCSBS
T ss_pred eecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEEEcCCcchhhhcCcccC
Confidence 000 0124455678899999999999987 7889999874 4568999999999865 4443456
Q ss_pred hCCCHHHHHHHHHc
Q psy15244 360 TGIDVVQSQIKIAQ 373 (1427)
Q Consensus 360 tGiDLv~~~i~iA~ 373 (1427)
+|.|+.+..+....
T Consensus 734 ~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 734 PGQSITPRILAKLF 747 (750)
T ss_dssp CCCCCHHHHHHHHC
T ss_pred CCCcHHHHHHHHhC
Confidence 89999988887653
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-15 Score=201.82 Aligned_cols=172 Identities=24% Similarity=0.279 Sum_probs=129.8
Q ss_pred cccccChhhHHHHHhHhhhcCCCCCCCchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCC
Q psy15244 1125 MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVD 1204 (1427)
Q Consensus 1125 ~~~~~~p~~~~~~~~~~~~~g~~~~l~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1204 (1427)
+..+|||++..+|.+.+++||++++|||+.||.||+.||++. +..++
T Consensus 993 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------------------------- 1039 (1165)
T 2qf7_A 993 ASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELF-ADIEK-------------------------------- 1039 (1165)
T ss_dssp HHHHHCHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEE-EEEET--------------------------------
T ss_pred HHHHcCcHHHHHHHHHHHhcCCcccCCchhhhcCCCcCceee-ecccC--------------------------------
Confidence 778899999999999999999999999999999999999985 44444
Q ss_pred CCCcccccCCCCCCcEEEEEeeCCcEEEeeecccccccccCcceeEEEEeccceeeeeeccccccccCCCchhhhhcccc
Q psy15244 1205 KLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGLHTTNTYNLQQILKTSPSDVFAFLRLKS 1284 (1427)
Q Consensus 1205 ~l~~~~f~~g~~~g~~~~v~~~~Gk~~~i~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1284 (1427)
|+++.+.+ ..+. ..+..+.|++||++||+.+.+.+++...-. . .....++....
T Consensus 1040 -------------gk~~~~~~-----~~~~------~~~~~g~~~~~~evnG~~~~v~v~~~~~~~-~-~~~~~~~a~~~ 1093 (1165)
T 2qf7_A 1040 -------------GKTLVIVN-----QAVS------ATDSQGMVTVFFELNGQPRRIKVPDRAHGA-T-GAAVRRKAEPG 1093 (1165)
T ss_dssp -------------TEEEEEEE-----EEEC------CCCTTSEEEEEEEETTEEEEEEEECGGGTC-C-SCCCSCBCCTT
T ss_pred -------------CccceeEe-----cccC------CCccCCceEEEEEECCEEEEEEecCccccc-c-cccccccCCCC
Confidence 88888855 2333 244578999999999999999999874321 0 11112333334
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....|.++|.|...+|.++.|+.+ .. |..-+.+|- ......|.||.
T Consensus 1094 ~~~~v~ap~~G~v~~~~v~~Gd~V-----------~~-G~~l~~iEa----------------------mKme~~i~Ap~ 1139 (1165)
T 2qf7_A 1094 NAAHVGAPMPGVISRVFVSSGQAV-----------NA-GDVLVSIEA----------------------MKMETAIHAEK 1139 (1165)
T ss_dssp CTTEEECSSCEEEEEECCSSCCCC---------------CEEEEEEC-------------------------CEEEECCS
T ss_pred CCceeeCCCCeEEEEEEcCCcCEe-----------CC-CCEEEEEEc----------------------ccceEEEEcCC
Confidence 456799999999999999999987 22 322222220 01246899999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.|+|.++.|++||.|..||+|++|+
T Consensus 1140 ~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1140 DGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CEEEEEEEeCCCCEECCCCEEEEec
Confidence 9999999999999999999999886
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=165.80 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=156.1
Q ss_pred CCCEEEeCCCccc--cc---HHHHHHHHHCCCceeCCCHHHHHHhCCH----HHHHHHHHhCCC---CCCCCccccCCCH
Q psy15244 130 NVDAIHPGYGFLS--ER---EDFAKAVIGAGLEFIGPAPNVLKTLGDK----VLARDAALKADV---PIIPGTTEPVTDV 197 (1427)
Q Consensus 130 ~vDaI~pg~gfls--E~---~~~a~~~e~~Gi~fiGps~eai~~~~DK----~~~r~~a~~aGV---pvp~~~~~~v~s~ 197 (1427)
..|+|++-.+... ++ -.+.+.++..|++.+ ++++++..++|| ..+-+++.++|+ |.|+.+. ..+.
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~--~~~~ 144 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY--YPNH 144 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE--ESSG
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEe--eCCh
Confidence 4789998755332 22 345667999999987 899999999999 566777888888 8666542 3343
Q ss_pred HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccE
Q psy15244 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 198 eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~v 277 (1427)
.+ .++..|||+|+||..|+.|+||.++++.+++++.++..... +..+++||||+.++.+.+.++++. +
T Consensus 145 ~~---~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VvGg~---v 212 (309)
T 1i7n_A 145 RE---MLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIGNN---Y 212 (309)
T ss_dssp GG---GSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETTE---E
T ss_pred hh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeecCCCceEEEEEECCE---E
Confidence 33 45678999999999999999999999999998887654322 367889999998899999998764 5
Q ss_pred EEeeeec--cccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEEEcCCCcEEEEeeCC--CCCCc
Q psy15244 278 VHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-GYSNAGTVEFLLDKDDNFYFIEVNP--RLQVE 352 (1427)
Q Consensus 278 v~l~erd--~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-g~~G~~~VEflvd~dG~~yfIEINp--Rl~ge 352 (1427)
+....|. -..+.+ .......|. .+++ ++.+.|.++++++ |+ +.+.||++.+++|.+|++|+|. -++-+
T Consensus 213 ~a~~Rr~~~g~wrtN-~~~~~~e~~-~l~~----e~~~la~~A~~a~gGl-di~GVDll~~~~g~~~V~EVN~~~~P~~~ 285 (309)
T 1i7n_A 213 KAYMRTSISGNWKTN-TGSAMLEQI-AMSD----RYKLWVDACSEMFGGL-DICAVKAVHGKDGKDYIFEVMDCSMPLIG 285 (309)
T ss_dssp EEEEEESSCTTTSCS-CCCSSEEEE-CCCH----HHHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCS
T ss_pred EEEEEEcCCCCCeec-CCcceeeec-CCCH----HHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEECCCCCCCcc
Confidence 5544431 112221 111111122 2444 4778889999999 56 6889999999999899999999 66643
Q ss_pred hhHHHHHhCCCHHHHHHHH
Q psy15244 353 HTLSEEITGIDVVQSQIKI 371 (1427)
Q Consensus 353 ~~vte~~tGiDLv~~~i~i 371 (1427)
-++..++.++.+..+..
T Consensus 286 --~~~~~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 286 --EHQVEDRQLITDLVISK 302 (309)
T ss_dssp --SCHHHHHHHHHHHHHHH
T ss_pred --chhhhhHHHHHHHHHHH
Confidence 23335677777777654
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=168.66 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=158.2
Q ss_pred CCCEEEeCCCccc--c---cHHHHHHHHHCCCceeCCCHHHHHHhCCH----HHHHHHHHhCCC---CCCCCccccCCCH
Q psy15244 130 NVDAIHPGYGFLS--E---REDFAKAVIGAGLEFIGPAPNVLKTLGDK----VLARDAALKADV---PIIPGTTEPVTDV 197 (1427)
Q Consensus 130 ~vDaI~pg~gfls--E---~~~~a~~~e~~Gi~fiGps~eai~~~~DK----~~~r~~a~~aGV---pvp~~~~~~v~s~ 197 (1427)
..|+|++-.+... + .-.+.+.++..|++++ ++++++..|+|| ..+-+++.++|+ |.++.+. ..+.
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~--~~~~ 256 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTF--YPNH 256 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE--ESSG
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEe--cCch
Confidence 5799998755332 2 1245677999999987 899999999999 556677788888 7555441 2333
Q ss_pred HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccE
Q psy15244 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 198 eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~v 277 (1427)
.+ +++..|||+||||..|+.|+||.++++.++++..++..... +..+++||||+.++.+.|.++++. +
T Consensus 257 ~~---~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~------~~~~~vQEfI~~g~DIRv~VVGg~---v 324 (422)
T 1pk8_A 257 KE---MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT------KTYATAEPFIDAKYDVRVQKIGQN---Y 324 (422)
T ss_dssp GG---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TSCEEEEECCCEEEEEEEEEETTE---E
T ss_pred hh---hhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc------CceEEEEeecCCCceEEEEEECCE---E
Confidence 33 34678999999999999999999999999999888654332 367889999998899999999764 5
Q ss_pred EEeeeec--cccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEEEcCCCcEEEEeeCC--CCCCc
Q psy15244 278 VHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-GYSNAGTVEFLLDKDDNFYFIEVNP--RLQVE 352 (1427)
Q Consensus 278 v~l~erd--~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-g~~G~~~VEflvd~dG~~yfIEINp--Rl~ge 352 (1427)
+....|. -..+.+. ......+. .+++ ++.+.|.++++++ |+ +.+.||++.+++|.+|++|||. .++-+
T Consensus 325 va~~Rr~~~g~WrtNv-g~g~~e~i-~lt~----e~~elA~kAaka~gGl-diaGVDlL~s~dG~~~VlEVN~s~~P~~~ 397 (422)
T 1pk8_A 325 KAYMRTSVSGNWKTNT-GSAMLEQI-AMSD----RYKLWVDTCSEIFGGL-DICAVEALHGKDGRDHIIEVVGSSMPLIG 397 (422)
T ss_dssp EEEEEEESSSCSSTTS-SCEEEEEE-CCCH----HHHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCT
T ss_pred EEEEEEcCCCCceecc-Cceeeeee-CCCH----HHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEECCCCCCCcc
Confidence 5543331 1122221 11222222 2454 5778899999999 56 5889999999999899999999 66533
Q ss_pred hhHHHHHhCCCHHHHHHHHH
Q psy15244 353 HTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 353 ~~vte~~tGiDLv~~~i~iA 372 (1427)
-++..++.|+.+..+...
T Consensus 398 --g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 398 --DHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp --TCHHHHHHHHHHHHHHHH
T ss_pred --chhhhHHHHHHHHHHHHH
Confidence 334457888888887754
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-14 Score=163.90 Aligned_cols=220 Identities=15% Similarity=0.103 Sum_probs=159.9
Q ss_pred CCCEEEeCCCccc--c---cHHHHHHHHHCCCceeCCCHHHHHHhCCH----HHHHHHHHhCCC---CCCCCccccCCCH
Q psy15244 130 NVDAIHPGYGFLS--E---REDFAKAVIGAGLEFIGPAPNVLKTLGDK----VLARDAALKADV---PIIPGTTEPVTDV 197 (1427)
Q Consensus 130 ~vDaI~pg~gfls--E---~~~~a~~~e~~Gi~fiGps~eai~~~~DK----~~~r~~a~~aGV---pvp~~~~~~v~s~ 197 (1427)
..|+|++-.+... + .-.+.+.++..|++.+ ++++++..++|| ..+-+++.++|+ |.++.+. ..+.
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~--~~~~ 161 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTF--FPNH 161 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEE--ESSS
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEe--cCch
Confidence 6899999866422 2 1245667899999987 899999999999 667777788888 8666431 2333
Q ss_pred HHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccE
Q psy15244 198 DKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 198 eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~v 277 (1427)
.+ ..+..|||+|+||..|+.|+||.++++.+++++.++..... +..+++||||+.++.+.|.++++. +
T Consensus 162 ~~---~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VVGg~---v 229 (344)
T 2p0a_A 162 KP---MVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA------KTYATTEAFIDSKYDIRIQKIGSN---Y 229 (344)
T ss_dssp TT---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETTE---E
T ss_pred hh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeccCCCccEEEEEECCE---E
Confidence 22 35578999999999999999999999999998877644321 467889999998899999998764 5
Q ss_pred EEeeeec--cccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHc-CCCCeEEEEEEEcCCCcEEEEeeCC--CCCCc
Q psy15244 278 VHLYERD--CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSL-GYSNAGTVEFLLDKDDNFYFIEVNP--RLQVE 352 (1427)
Q Consensus 278 v~l~erd--~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al-g~~G~~~VEflvd~dG~~yfIEINp--Rl~ge 352 (1427)
+....|. -..+.+.. .....+. .+++ ++.+.|.++++++ |+ +.+.||++.+++|.+|++|+|. .+.-+
T Consensus 230 va~~R~~~~g~wrtN~~-~~~~e~~-~l~~----e~~~la~~Aa~a~gGl-di~GVDll~~~~G~~~VlEVN~~~~P~~~ 302 (344)
T 2p0a_A 230 KAYMRTSISGNWKANTG-SAMLEQV-AMTE----RYRLWVDSCSEMFGGL-DICAVKAVHSKDGRDYIIEVMDSSMPLIG 302 (344)
T ss_dssp EEEEEEESSSCSSTTSS-SEEEEEE-CCCH----HHHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCG
T ss_pred EEEEEecCCCCCeecCC-ceEEEee-CCCH----HHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEEcCCCCCccc
Confidence 5443321 11222211 1221222 2444 4778888999999 56 6889999999999899999999 65532
Q ss_pred hhHHHHHhCCCHHHHHHHHHc
Q psy15244 353 HTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 353 ~~vte~~tGiDLv~~~i~iA~ 373 (1427)
-++..++.|+.+..++...
T Consensus 303 --~~~~~~~~~Ia~~ii~~i~ 321 (344)
T 2p0a_A 303 --EHVEEDRQLMADLVVSKMS 321 (344)
T ss_dssp --GGHHHHHHHHHHHHHHHHH
T ss_pred --chhhhHHHHHHHHHHHHHH
Confidence 4455688899999888663
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-15 Score=147.97 Aligned_cols=105 Identities=39% Similarity=0.697 Sum_probs=92.1
Q ss_pred HHhCCHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHH
Q psy15244 167 KTLGDKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALA 246 (1427)
Q Consensus 167 ~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~ 246 (1427)
..+.||..++++++++|||+|++....+.+.+++.++++++|||+|+||..|+||+|++++++.+|+.++++.+......
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~ 83 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAAS 83 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999998522578999999999999999999999999999999999999999999988766555
Q ss_pred ccCCCcEEEEeeccCCceEEEEEEe
Q psy15244 247 SFGKDDMLVEKYIDRPRHIEVQILG 271 (1427)
Q Consensus 247 ~fg~~~vlVEeyIeggreieVqvl~ 271 (1427)
.+++..++||+||++++|++|++++
T Consensus 84 ~~~~~~~lvee~i~g~~E~~v~v~g 108 (108)
T 2cqy_A 84 SFGDDRLLIEKFIDNPRHISGPSSG 108 (108)
T ss_dssp HTSSCCEEEEECCSSSSCCCSCCCC
T ss_pred hcCCCcEEEeeccCCCcEEEEEecC
Confidence 5666899999999977799988753
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=166.77 Aligned_cols=231 Identities=16% Similarity=0.207 Sum_probs=154.2
Q ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCc-ccc
Q psy15244 65 RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGF-LSE 143 (1427)
Q Consensus 65 rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gf-lsE 143 (1427)
+..+..+++++|+++|++++.++..... . .....|+|++..+. ..|
T Consensus 31 ~~~~~~~l~~al~~~G~~~~~iD~~~~~--~-------------------------------~~~~~Dvvi~~l~~~~~e 77 (346)
T 2q7d_A 31 KKLNFQAFAELCRKRGMEVVQLNLSRPI--E-------------------------------EQGPLDVIIHKLTDVILE 77 (346)
T ss_dssp HHHTHHHHHHHHHTTTCEEEECCTTSCS--G-------------------------------GGCCCSEEEECCHHHHHH
T ss_pred hhhhHHHHHHHHHhCCcEEEEcccccch--h-------------------------------hcCCCCEEEeCCcccccc
Confidence 4445678999999999999877543210 0 00247777776432 111
Q ss_pred --------cHH---HHHHHH-HCCCceeCCCHHHHHHhCCHHHHHHHHHhC-------CCCCCCCccccCCC--HHHHHH
Q psy15244 144 --------RED---FAKAVI-GAGLEFIGPAPNVLKTLGDKVLARDAALKA-------DVPIIPGTTEPVTD--VDKVKE 202 (1427)
Q Consensus 144 --------~~~---~a~~~e-~~Gi~fiGps~eai~~~~DK~~~r~~a~~a-------GVpvp~~~~~~v~s--~eea~~ 202 (1427)
... +.+... ..|++++ +++.++..+.||..+.+++.++ |||+|++. .+.+ .+++.+
T Consensus 78 a~~~d~~~~~~~~~l~~~~~~~~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~--~~~~~~~~~~~~ 154 (346)
T 2q7d_A 78 ADQNDSQSLELVHRFQEYIDAHPETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFM--ELTSLCGDDTMR 154 (346)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCTTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEE--EECSCCCTTHHH
T ss_pred cccCchhHHHHHHHHHHHHHHCCCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEE--EEeCCCHHHHHH
Confidence 111 222211 2478766 8999999999999999999997 99999986 3443 244544
Q ss_pred HHH--hcCCcEEEeecCCCC--CcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeecc-CCceEEEEEEecccccE
Q psy15244 203 FCD--EVEFPVILKAAFGGG--GRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYID-RPRHIEVQILGDKYGDV 277 (1427)
Q Consensus 203 ~a~--~iGyPvVVKP~~GgG--GrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIe-ggreieVqvl~Dg~G~v 277 (1427)
.++ .+|||+|+||..|.| |.||.++.+.++|... +.+++|||||+ +|+++.|.++++ .+
T Consensus 155 ~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-------------~~~~lvQefI~~~G~dirv~VvG~---~v 218 (346)
T 2q7d_A 155 LLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-------------QPPCVVQNFINHNAVLYKVFVVGE---SY 218 (346)
T ss_dssp HHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---------------CCEEEEECCCCTTEEEEEEEETT---EE
T ss_pred HHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc-------------CCCEEEEEeeCCCCeEEEEEEECC---EE
Confidence 443 578999999997644 6799999999988742 36799999998 478999999865 34
Q ss_pred EEeeeeccc---c------------cccc--ceEEEEcc------CCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEE
Q psy15244 278 VHLYERDCS---M------------QRRY--QKVIQIAP------AQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLL 334 (1427)
Q Consensus 278 v~l~erd~s---~------------qr~~--qk~ie~aP------a~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflv 334 (1427)
+....+... . ++.+ .......| ...+++ .+++.+.|.++.++||+..+ .||+++
T Consensus 219 ~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~~~-gvDii~ 295 (346)
T 2q7d_A 219 TVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVSLF-GIDIII 295 (346)
T ss_dssp EEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCCEE-EEEEEE
T ss_pred EEEEEecCCCcCcCccccccccccceeeccCCccccccccccccccccCCC--hHHHHHHHHHHHHHhCCceE-eeEEEe
Confidence 443222100 0 0000 00000111 011232 47899999999999999966 599999
Q ss_pred cC-CCcEEEEeeCCCCC
Q psy15244 335 DK-DDNFYFIEVNPRLQ 350 (1427)
Q Consensus 335 d~-dG~~yfIEINpRl~ 350 (1427)
+. +|++|+||||+=++
T Consensus 296 ~~~~g~~~VlEVN~~PG 312 (346)
T 2q7d_A 296 NNQTGQHAVIDINAFPG 312 (346)
T ss_dssp CTTTCCEEEEEEEESCC
T ss_pred ecCCCCEEEEEEeCCcc
Confidence 86 68899999999554
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=172.12 Aligned_cols=101 Identities=28% Similarity=0.437 Sum_probs=82.3
Q ss_pred EEEEEECCEEeEe---chhhhh-hhhccccCCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCC
Q psy15244 1326 TVFFLYNGQLRSL---DKNKAK-KLKLRSKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASA 1401 (1427)
Q Consensus 1326 ~v~~elnG~~~~v---d~~~~~-~~~~~~~a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~ 1401 (1427)
.+.+.++|..+.+ +..... ......++...+++.|.|||||+|++|+|++||+|++||+|++|||||||++|+||.
T Consensus 577 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~ 656 (681)
T 3n6r_A 577 GFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEK 656 (681)
T ss_dssp EEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCCCSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSS
T ss_pred EEEEEECCeEEEEEecCchhhhhccccccccCCCCCCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCC
Confidence 3555566766655 221111 112223345567889999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1402 DGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1402 ~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+|+|+++.+++|+.|+.|++|++|+
T Consensus 657 ~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 657 KGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 9999999999999999999999985
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=128.12 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=68.1
Q ss_pred CCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1355 DTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1355 ~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.++..|.||++|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++. ++|+.|..|++|+.|+
T Consensus 3 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~ 73 (84)
T 2kcc_A 3 NDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLE 73 (84)
T ss_dssp CCTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEE
T ss_pred CCCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999 9999999999999886
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=126.19 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=69.6
Q ss_pred CCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
....++..|.||++|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|. +.+++|+.|..|++|++|+
T Consensus 12 ~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~ 85 (100)
T 2dn8_A 12 EKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLE 85 (100)
T ss_dssp CCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEEC
T ss_pred EcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEE
Confidence 3445677899999999999999999999999999999999999999999999999 9999999999999999885
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.9e-13 Score=122.11 Aligned_cols=70 Identities=33% Similarity=0.513 Sum_probs=67.2
Q ss_pred CCceecCCCeEEEEE-------EecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1357 AGEIGAPMPGNIIEV-------KVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v-------~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
...|.||++|+|.++ +|++||.|++||+|+.||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 4 ~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 4 GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 457999999999997 9999999999999999999999999999999999999999999999999999885
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=116.80 Aligned_cols=68 Identities=32% Similarity=0.517 Sum_probs=65.8
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+|.||++|+|.+|+|++||.|++||+|+.||+|||+.+|+||.+|+|.++.+++|+.|..|++|+.|.
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~ 68 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELS 68 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEG
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999874
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-13 Score=157.84 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=123.4
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC-cEEEeec--CCCCCcC---------eEEecCHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF-PVILKAA--FGGGGRG---------MRMVANKDAIEENFK 238 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy-PvVVKP~--~GgGGrG---------V~iV~s~eeL~~a~~ 238 (1427)
+++.+|++++++|||+|++. .+.+.+++.++++++|| |+||||. .||.|+| |++++|++|+.++++
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~--~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~ 81 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRFF--VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAK 81 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHH
Confidence 67899999999999999997 78999999999999999 8999995 5555554 999999999999988
Q ss_pred HHHHHH--HHcc---C--CCcEEEEeeccCCceEEEEEEecccc--cEEEee-eeccccccc----cceEEE--EccCCC
Q psy15244 239 RAQSEA--LASF---G--KDDMLVEKYIDRPRHIEVQILGDKYG--DVVHLY-ERDCSMQRR----YQKVIQ--IAPAQD 302 (1427)
Q Consensus 239 ~a~~ea--~~~f---g--~~~vlVEeyIeggreieVqvl~Dg~G--~vv~l~-erd~s~qr~----~qk~ie--~aPa~~ 302 (1427)
++.... ...+ | ...++||+|++.++|+.+.++.|... .++.++ +..+.+..- ..++.. +.|...
T Consensus 82 ~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~ 161 (395)
T 2fp4_B 82 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEG 161 (395)
T ss_dssp TTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTC
T ss_pred HHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCC
Confidence 765432 0111 2 35799999999899999999999763 455554 444544421 334443 335555
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEE----------EEEcCCCcEEEEeeCCCCC
Q psy15244 303 MSVSVRDAITETSVRLAKSLGYSNAGTVE----------FLLDKDDNFYFIEVNPRLQ 350 (1427)
Q Consensus 303 l~~e~~~~l~~~a~~l~~alg~~G~~~VE----------flvd~dG~~yfIEINpRl~ 350 (1427)
+++ ..+.++++.+|+.+...-+ ++.+ . +++++||||++-
T Consensus 162 l~~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~-~-d~~~lEINPl~~ 210 (395)
T 2fp4_B 162 IKD-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFLK-I-DATQVEVNPFGE 210 (395)
T ss_dssp CCH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred CCH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhh-C-CeEEEEeeeEEE
Confidence 665 4577888888987542111 2223 2 599999999985
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=121.09 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=61.8
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i~ 1426 (1427)
+.+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|..|++|++|+
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999999 899999999886
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=116.22 Aligned_cols=75 Identities=32% Similarity=0.509 Sum_probs=71.1
Q ss_pred CCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.+.+...|.||++|.|.+|+|++||.|++||+|+.|++|||+.+|+||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 3 ~~~~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 3 AGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCCCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCcCCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 445677889999999999999999999999999999999999999999999999999999999999999999885
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-12 Score=154.31 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=122.3
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCc-EEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFP-VILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEAL 245 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyP-vVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~ 245 (1427)
+++.+|++++++|||+|++. .+.+.+++.++++++||| +||||..+.||| ||+++++++|+.++++.+.....
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~ 81 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRL 81 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHCCcCCCCee--EECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhh
Confidence 78999999999999999997 789999999999999999 999999876655 99999999999999987653211
Q ss_pred -------HccCCCcEEEEeeccCCceEEEEEEeccc-c-cEEEee-ee--cccc-cccc-ceEEE--EccCCCCCHHHHH
Q psy15244 246 -------ASFGKDDMLVEKYIDRPRHIEVQILGDKY-G-DVVHLY-ER--DCSM-QRRY-QKVIQ--IAPAQDMSVSVRD 309 (1427)
Q Consensus 246 -------~~fg~~~vlVEeyIeggreieVqvl~Dg~-G-~vv~l~-er--d~s~-qr~~-qk~ie--~aPa~~l~~e~~~ 309 (1427)
.......++||+|++.++|+++.++.|.. | .++.+. +. ++.. ..++ .++.. ..|+..+++..
T Consensus 82 ~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~~-- 159 (388)
T 2nu8_B 82 VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQ-- 159 (388)
T ss_dssp CCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHHH--
T ss_pred hccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHHH--
Confidence 00113579999999988999999999986 3 455443 21 2221 2212 33443 66766788754
Q ss_pred HHHHHHHHHHHHcCCCCeEE---E-------EEEEcCCCcEEEEeeCCCCCC
Q psy15244 310 AITETSVRLAKSLGYSNAGT---V-------EFLLDKDDNFYFIEVNPRLQV 351 (1427)
Q Consensus 310 ~l~~~a~~l~~alg~~G~~~---V-------Eflvd~dG~~yfIEINpRl~g 351 (1427)
+.++++.+|+.+... . +++.+. +++++||||++-.
T Consensus 160 -----a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~--d~~~lEINPl~~~ 204 (388)
T 2nu8_B 160 -----GRELAFKLGLEGKLVQQFTKIFMGLATIFLER--DLALIEINPLVIT 204 (388)
T ss_dssp -----HHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHT--TEEEEEEEEEEEE
T ss_pred -----HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC--CEEEEEecceEEc
Confidence 445555667765210 1 122232 5999999998863
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-12 Score=120.90 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++.+++|+.|..|++|++|+
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~ 79 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE 79 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEE
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999986
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-12 Score=117.86 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=62.8
Q ss_pred cCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1362 APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++++|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLT 76 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEEC
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999885
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=112.93 Aligned_cols=71 Identities=37% Similarity=0.619 Sum_probs=67.6
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+...|.||++|+|.+|+|++||.|++||+|+.+++|||+.+|+||.+|+|.++.+++|+.|..|++|+.|+
T Consensus 4 ~~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 4 SENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp -CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999875
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-12 Score=115.84 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=63.2
Q ss_pred cCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1362 APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+|++|+|.+|+|++||.|++||+|+.+|+|||+.+|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999986
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-12 Score=121.03 Aligned_cols=63 Identities=29% Similarity=0.388 Sum_probs=61.2
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCee-CCCCEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQV-AQNDLVVVLD 1426 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V-~~g~~L~~i~ 1426 (1427)
.+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.| ..|++|++|+
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 57999999999999999999999999999999999999999999999999999 9999999986
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-12 Score=124.20 Aligned_cols=74 Identities=32% Similarity=0.557 Sum_probs=33.8
Q ss_pred CCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1353 DSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1353 ~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++.+...|.||++|+|.+|.|++||.|++||+|++||+|||+.+|+||.+|+|.++.+++|+.|..|++|++|+
T Consensus 21 ~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 21 QSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999875
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-12 Score=123.02 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=61.1
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVLD 1426 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i~ 1426 (1427)
.+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|..|++|++|+
T Consensus 20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 20 QAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 579999999999999999999999999999999999999999999999999 899999999885
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=123.67 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=60.8
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVLD 1426 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i~ 1426 (1427)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+ .|..|++|++|+
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence 469999999999999999999999999999999999999999999999998 899999999986
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=164.70 Aligned_cols=72 Identities=31% Similarity=0.441 Sum_probs=69.1
Q ss_pred CCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1354 SDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1354 ~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
+.+...|.|||+|+|++|+|++||.|++||+|++||+||||++|.||.+|+|+++.|++|+.|+.|++|++|
T Consensus 1164 ~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CTTCEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCCcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 346678999999999999999999999999999999999999999999999999999999999999999987
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=116.83 Aligned_cols=72 Identities=40% Similarity=0.582 Sum_probs=69.2
Q ss_pred CCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1355 DTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1355 ~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+...|.||++|+|.+|+|++||.|++||+|+.|++|||+.+|+||.+|+|.++.+++|+.|..|++|++|.
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~ 83 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFE 83 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEEC
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEE
Confidence 467889999999999999999999999999999999999999999999999999999999999999999875
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-12 Score=117.04 Aligned_cols=68 Identities=35% Similarity=0.573 Sum_probs=64.8
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.++++++|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 9 ~~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (81)
T 1gjx_A 9 DIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVE 76 (81)
T ss_dssp CCSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEEC
T ss_pred CCCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEE
Confidence 35578999999999999999999999999999999999999999999999999999999999999875
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-11 Score=111.52 Aligned_cols=62 Identities=34% Similarity=0.484 Sum_probs=61.0
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~ 75 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 75 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEE
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999986
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-11 Score=109.70 Aligned_cols=61 Identities=26% Similarity=0.483 Sum_probs=59.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+ +|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~ 73 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELE 73 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEE
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 6 999999999999999999999999999999999999999999999999999999999886
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-12 Score=117.92 Aligned_cols=68 Identities=34% Similarity=0.489 Sum_probs=65.4
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|.+|..|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|.
T Consensus 4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~ 71 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 71 (85)
T ss_dssp CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 57788889999999999999999999999999999999999999999999999999999999999985
|
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-11 Score=134.39 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=132.5
Q ss_pred CCEEEeCCC--cccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCCCCccccCCCH-----------
Q psy15244 131 VDAIHPGYG--FLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPIIPGTTEPVTDV----------- 197 (1427)
Q Consensus 131 vDaI~pg~g--flsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp~~~~~~v~s~----------- 197 (1427)
+|.+++.|+ |-.+ ...+.++..+. |+-++..++..++||....++|+++|||+|++.. +...
T Consensus 58 ~d~lisf~s~gfpl~--kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~--~~rd~~~~~~~~~~e 132 (330)
T 3t7a_A 58 CDCLISFHSKGFPLD--KAVAYAKLRNP-FVINDLNMQYLIQDRREVYSILQAEGILLPRYAI--LNRDPNNPKECNLIE 132 (330)
T ss_dssp CSEEEECCCTTCCHH--HHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEE--ECCBTTBGGGSSEEE
T ss_pred CCEEEEeccCCCcHH--HHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEE--EeCCCCCccccceec
Confidence 677887653 4322 23445555564 4559999999999999999999999999999862 2221
Q ss_pred -HHHHH-HHHhcCCcEEEeecCCC-----------CCcC----eEEecCHHHH---HHHHHHHHHHHHHccCCCcEEEEe
Q psy15244 198 -DKVKE-FCDEVEFPVILKAAFGG-----------GGRG----MRMVANKDAI---EENFKRAQSEALASFGKDDMLVEK 257 (1427)
Q Consensus 198 -eea~~-~a~~iGyPvVVKP~~Gg-----------GGrG----V~iV~s~eeL---~~a~~~a~~ea~~~fg~~~vlVEe 257 (1427)
+++.+ ..+.+++|+|+||..|. .|-| ++++.+.+.. +..+ -.+..+++||
T Consensus 133 ~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v----------r~~~~~i~QE 202 (330)
T 3t7a_A 133 GEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV----------RKTGSYIYEE 202 (330)
T ss_dssp CSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC----------CSSSCEEEEE
T ss_pred cchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh----------ccCCcEEEEe
Confidence 11111 23467899999999995 2223 4455543331 1111 1157899999
Q ss_pred eccC-CceEEEEEEecccccEEEeeeeccc----cccccceEEEE-ccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy15244 258 YIDR-PRHIEVQILGDKYGDVVHLYERDCS----MQRRYQKVIQI-APAQDMSVSVRDAITETSVRLAKSLGYSNAGTVE 331 (1427)
Q Consensus 258 yIeg-greieVqvl~Dg~G~vv~l~erd~s----~qr~~qk~ie~-aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VE 331 (1427)
||+. |+.+-|.++++ ++++-..|... .-|++..-.+. .|. .|++ +..+.|.++++++|.. ++.||
T Consensus 203 FI~~~G~DIRv~vVG~---~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v-~Lt~----eek~iA~kaa~a~G~~-v~GVD 273 (330)
T 3t7a_A 203 FMPTDGTDVKVYTVGP---DYAHAEARKSPALDGKVERDSEGKEVRYPV-ILNA----REKLIAWKVCLAFKQT-VCGFD 273 (330)
T ss_dssp CCCCSSEEEEEEEEST---TCEEEEEEECTTSSCBCCBCTTSCBCCEEC-CCCH----HHHHHHHHHHHHTTBS-EEEEE
T ss_pred ccCCCCceEEEEEECC---EEEEEEEEeCCCCCCcEEEcCCCCceeeee-cCCH----HHHHHHHHHHHHhCCc-eEEEE
Confidence 9984 68999988875 56776666432 12222222222 244 4675 4578899999999985 88899
Q ss_pred EEEcCCCcEEEEeeCCCCCCc
Q psy15244 332 FLLDKDDNFYFIEVNPRLQVE 352 (1427)
Q Consensus 332 flvd~dG~~yfIEINpRl~ge 352 (1427)
++.+.+ .+|++|+|.+..+.
T Consensus 274 lLrs~~-~~~V~EVNg~~fvk 293 (330)
T 3t7a_A 274 LLRANG-QSYVCDVNGFSFVK 293 (330)
T ss_dssp EEEETT-EEEEEEEEESCCCS
T ss_pred EEEECC-ccEEEEeCCCcccc
Confidence 999864 49999999999975
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-12 Score=118.11 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=61.6
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~ 77 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999875
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=129.39 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=89.7
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEALA 246 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~~ 246 (1427)
+-+.+|++++++|||+|++. .+.+.+++.++++++|||+||||....||+ ||+++++++|+.++++++......
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~ 81 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGK--VAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIK 81 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEET
T ss_pred CHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhcc
Confidence 45789999999999999997 789999999999999999999999866665 999999999999999876542211
Q ss_pred ccCCCcEEEEeeccCCceEEEEEEeccccc-EEEe
Q psy15244 247 SFGKDDMLVEKYIDRPRHIEVQILGDKYGD-VVHL 280 (1427)
Q Consensus 247 ~fg~~~vlVEeyIeggreieVqvl~Dg~G~-vv~l 280 (1427)
.+....++||+|++.++|+.+.++.|.... .+.+
T Consensus 82 g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~ 116 (397)
T 3ufx_B 82 GLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLM 116 (397)
T ss_dssp TEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEE
T ss_pred CCccceEEEEEeecCCeeEEEEEEecCCCCCcEEE
Confidence 222468999999998999999999997643 4433
|
| >1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.3e-10 Score=111.74 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=62.6
Q ss_pred ceecCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEE---EecCCCeeC---CCC-EEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEI---FVEVGGQVA---QND-LVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i---~v~~G~~V~---~g~-~L~~i~ 1426 (1427)
.+.+|++|.|+.+.+ ++||.|++||++++||||||+++|.||++|+|.++ .++.|+.|+ .|+ .|+.|+
T Consensus 38 ~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~ 113 (136)
T 1zko_A 38 NHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKME 113 (136)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEE
T ss_pred hhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEE
Confidence 466799999998888 99999999999999999999999999999999999 788999998 887 888775
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.1e-10 Score=133.56 Aligned_cols=67 Identities=31% Similarity=0.426 Sum_probs=0.0
Q ss_pred eecCCC-eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1360 IGAPMP-GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1360 V~APm~-G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++..|. |+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|..|++|++|+
T Consensus 10 lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (428)
T 3dva_I 10 IGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 333454 9999999999999999999999999999999999999999999999999999999999885
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-08 Score=100.56 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=63.5
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCcee-----------------------------eeecCCCeEEEEEE
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTET-----------------------------LIHASADGVVKEIF 1409 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~-----------------------------~i~Ap~~G~V~~i~ 1409 (1427)
.|.||++|.|.+|.|++||.|++||+|+.|++.+.+. .|+||++|+|.++.
T Consensus 3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 5889999999999999999999999999999987664 99999999999999
Q ss_pred ecCCCeeCCC-CEEEEEe
Q psy15244 1410 VEVGGQVAQN-DLVVVLD 1426 (1427)
Q Consensus 1410 v~~G~~V~~g-~~L~~i~ 1426 (1427)
+++|+.|..| ++|+.|.
T Consensus 83 ~~~G~~v~~g~~~l~~i~ 100 (116)
T 2k32_A 83 VNIGDYVSASTTELVRVT 100 (116)
T ss_dssp CCTTCEECTTTSCCEEEE
T ss_pred CCCCCEEcCCCcEEEEEE
Confidence 9999999998 9998874
|
| >1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.8e-08 Score=96.87 Aligned_cols=68 Identities=16% Similarity=0.272 Sum_probs=56.6
Q ss_pred ceecCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC---eeC---CCC-EEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG---QVA---QND-LVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~---~V~---~g~-~L~~i~ 1426 (1427)
....|+.|.|+.+.+ ++|+.|++||++++||+|||+++|.||++|+|.+++++.++ .|+ .|+ -|+.|+
T Consensus 29 d~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~ 104 (131)
T 1hpc_A 29 DHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIK 104 (131)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEE
T ss_pred hhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEE
Confidence 355689999999988 99999999999999999999999999999999999866554 453 333 566554
|
| >3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-07 Score=91.02 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=55.7
Q ss_pred ceecCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCC---CeeC---CCC-EEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVG---GQVA---QND-LVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G---~~V~---~g~-~L~~i~ 1426 (1427)
....|+.|.|+.+.+ ++|+.|++||++++||+|||.++|.||++|+|.+++.+.+ +.|+ .|+ -|+.|+
T Consensus 30 d~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~ 105 (128)
T 3a7l_A 30 EHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIK 105 (128)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEE
T ss_pred hHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEE
Confidence 345688899999888 9999999999999999999999999999999999987554 4444 344 555543
|
| >1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-07 Score=91.61 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=55.3
Q ss_pred ceecCCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEec---CCCee---CCCC-EEEEEe
Q psy15244 1359 EIGAPMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE---VGGQV---AQND-LVVVLD 1426 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~---~G~~V---~~g~-~L~~i~ 1426 (1427)
...+|+.|.|+.+.+ ++|++|++||++++||+|||.++|.||++|+|.+++++ ..+.| ..|+ -|+.|+
T Consensus 29 ~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~ 104 (128)
T 1onl_A 29 DYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLK 104 (128)
T ss_dssp HHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEE
T ss_pred hHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEE
Confidence 345688899988888 99999999999999999999999999999999999765 34444 3344 555553
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=89.91 Aligned_cols=188 Identities=21% Similarity=0.129 Sum_probs=123.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCch---------hhhhhccc-----cChHHHHHHHHHhCCCCceeeeecccc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVS---------HTCLKFLK-----ECPWERLAELRELIPNIPFQMILRGNS 743 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatf---------d~~~rfl~-----e~p~erl~~lr~~~p~~~~qml~Rg~n 743 (1427)
.+.++.+++++.|.+ .|++.||++.+..- .++.+-|. ++-++-++.+|+..|++++.++
T Consensus 28 p~~~~~~~~~~~l~~--~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m----- 100 (262)
T 2ekc_A 28 PDYETSLKAFKEVLK--NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM----- 100 (262)
T ss_dssp SCHHHHHHHHHHHHH--TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-----
T ss_pred CChHHHHHHHHHHHH--cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-----
Confidence 556789999999999 89999999876421 00111111 1124557888988878886553
Q ss_pred cccccCCC-cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 744 LVGYSNYS-PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 744 ~vgy~~~~-~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
+|.+-. ..-...|++.+.++|+|.+-+.|.. .+.+...++.+++.|. .. +.+ ..| ..+.+.+
T Consensus 101 --~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~--~ee~~~~~~~~~~~gl---~~---i~l----~~p---~t~~~rl 163 (262)
T 2ekc_A 101 --TYYNPIFRIGLEKFCRLSREKGIDGFIVPDLP--PEEAEELKAVMKKYVL---SF---VPL----GAP---TSTRKRI 163 (262)
T ss_dssp --CCHHHHHHHCHHHHHHHHHHTTCCEEECTTCC--HHHHHHHHHHHHHTTC---EE---CCE----ECT---TCCHHHH
T ss_pred --ecCcHHHHhhHHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHHcCC---cE---EEE----eCC---CCCHHHH
Confidence 232200 0013689999999999988886543 4778889999999998 32 122 244 2566777
Q ss_pred HHHHHHHHHCCCCEEEEccccCcCCHHH---HHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAGLLKPTA---AKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~---~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.++++..... +..+.+.+++|..+|.. ..++++.+|+.. ++||.+ .+|...++.++++.+|||.|=+
T Consensus 164 ~~ia~~a~gf-iy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~v----G~GI~t~e~~~~~~~gADgvIV 233 (262)
T 2ekc_A 164 KLICEAADEM-TYFVSVTGTTGAREKLPYERIKKKVEEYRELC-DKPVVV----GFGVSKKEHAREIGSFADGVVV 233 (262)
T ss_dssp HHHHHHCSSC-EEEESSCC---------CHHHHHHHHHHHHHC-CSCEEE----ESSCCSHHHHHHHHTTSSEEEE
T ss_pred HHHHHhCCCC-EEEEecCCccCCCCCcCcccHHHHHHHHHhhc-CCCEEE----eCCCCCHHHHHHHHcCCCEEEE
Confidence 7766554321 34556668999988754 778999999987 889887 7888888888889999987644
|
| >3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B | Back alignment and structure |
|---|
Probab=97.78 E-value=1.5e-05 Score=96.02 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=63.3
Q ss_pred CCCceecCCCeEEEEEEe-cCCCEEecCCEEEEEEcC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKV-KVGQQVKKNDVLIVMSVM------------------------------------------- 1391 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V-~~Gd~V~~G~~l~~ieam------------------------------------------- 1391 (1427)
+...|.++.+|.|.++.| ++||.|++||+|+.|++-
T Consensus 120 ~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~ 199 (413)
T 3ne5_B 120 QYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI 199 (413)
T ss_dssp EEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 346799999999999999 999999999999999841
Q ss_pred -----CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1392 -----KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1392 -----Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.-...|+||++|+|.++.+++|+.|..|++|++|.
T Consensus 200 ~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~ 239 (413)
T 3ne5_B 200 ATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 239 (413)
T ss_dssp HHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred HhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence 23468999999999999999999999999999773
|
| >3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.8e-05 Score=91.81 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=65.4
Q ss_pred CCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCc--------------------------------------
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKT-------------------------------------- 1393 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKm-------------------------------------- 1393 (1427)
+++.....|.|+.+|.|.+++|++||.|++||+|+.|+.-..
T Consensus 52 ~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~ 131 (359)
T 3lnn_A 52 ADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDF 131 (359)
T ss_dssp CCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTH
T ss_pred ECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 334456789999999999999999999999999999987432
Q ss_pred --------------------------------------eeeeecCCCeEEEEEEecCCCeeCC-CCEEEEEe
Q psy15244 1394 --------------------------------------ETLIHASADGVVKEIFVEVGGQVAQ-NDLVVVLD 1426 (1427)
Q Consensus 1394 --------------------------------------e~~i~Ap~~G~V~~i~v~~G~~V~~-g~~L~~i~ 1426 (1427)
.+.|+||++|+|..+.+.+|+.|.. |++|+.|.
T Consensus 132 ~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~ 203 (359)
T 3lnn_A 132 EQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence 2579999999999999999999999 99888763
|
| >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.5e-05 Score=90.61 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=60.9
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC--------------------------------------------
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK-------------------------------------------- 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK-------------------------------------------- 1392 (1427)
...|.||.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 22 ~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~ 101 (277)
T 2f1m_A 22 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD 101 (277)
T ss_dssp EEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHH
T ss_pred EEEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 457899999999999999999999999999997631
Q ss_pred ---------------------------ceeeeecCCCeEEEEEEecCCCeeCCC--CEEEEE
Q psy15244 1393 ---------------------------TETLIHASADGVVKEIFVEVGGQVAQN--DLVVVL 1425 (1427)
Q Consensus 1393 ---------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g--~~L~~i 1425 (1427)
-...|+||++|+|..+.+++|+.|..| ++|+.|
T Consensus 102 ~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i 163 (277)
T 2f1m_A 102 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 163 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEE
Confidence 125899999999999999999999999 578776
|
| >3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A | Back alignment and structure |
|---|
Probab=97.59 E-value=6.1e-05 Score=74.92 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=46.2
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
.+.|.|+-|.+ +.|++|++|+++++||+||+..+|.||++|+|.+++.+..+
T Consensus 29 ~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 29 EALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp HHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred hhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 45688988877 79999999999999999999999999999999999765544
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.56 E-value=4.7e-05 Score=89.16 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=61.1
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
+...|.++.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 30 ~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~ 109 (341)
T 3fpp_A 30 RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQ 109 (341)
T ss_dssp SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTS
T ss_pred EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999999999999999999998631
Q ss_pred ------------------------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCE---EEEE
Q psy15244 1393 ------------------------------------------TETLIHASADGVVKEIFVEVGGQVAQNDL---VVVL 1425 (1427)
Q Consensus 1393 ------------------------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~---L~~i 1425 (1427)
-.+.|+||++|+|.++.+.+|+.|..|+. |+.|
T Consensus 110 ~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i 187 (341)
T 3fpp_A 110 AVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTL 187 (341)
T ss_dssp SSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEE
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEE
Confidence 11569999999999999999999999986 7655
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00058 Score=77.23 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCC--------chhh-hhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGA--------VSHT-CLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~gga--------tfd~-~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-+++++.|.+ .|.+.||++-+. +... +.|-|.. +-++.++++|+..+++|+-.+
T Consensus 32 ~~~~~~~~~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm------ 103 (271)
T 3nav_A 32 NPEQSLAIMQTLID--AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLL------ 103 (271)
T ss_dssp CHHHHHHHHHHHHH--TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE------
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE------
Confidence 35678899999998 799999998543 2222 2333322 336778889888778886654
Q ss_pred ccccCCCc-chHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYSP-AEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~~-nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|-.. -=++.|++.++++|+|.+-+.|-.- +......+.+++.|. .. +... .| ..+.+.+.
T Consensus 104 -~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~--ee~~~~~~~~~~~gl---~~---I~lv----ap---~t~~eri~ 167 (271)
T 3nav_A 104 -MYANLVYARGIDDFYQRCQKAGVDSVLIADVPT--NESQPFVAAAEKFGI---QP---IFIA----PP---TASDETLR 167 (271)
T ss_dssp -ECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCG--GGCHHHHHHHHHTTC---EE---EEEE----CT---TCCHHHHH
T ss_pred -ecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCH--HHHHHHHHHHHHcCC---eE---EEEE----CC---CCCHHHHH
Confidence 2322100 0147899999999999998876543 457788889999998 32 2222 44 34455444
Q ss_pred HHHHHHHHCCCCEEE---EccccCcCC--HHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH-HHHhcCCEE
Q psy15244 824 DLAKQLVESGAQVLC---LKDMAGLLK--PTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA-CVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~---i~Dt~G~l~--P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la-Ai~AGad~V 893 (1427)
++++ .+.+-|+ +.+++|.-+ |..+.++++.+|+.. ++|+.+ .+|.......+ ++.+|||.|
T Consensus 168 ~i~~----~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v----GfGIst~e~~~~~~~~gADgv 234 (271)
T 3nav_A 168 AVAQ----LGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD-APPALL----GFGISEPAQVKQAIEAGAAGA 234 (271)
T ss_dssp HHHH----HCCSCEEECCCC--------CCHHHHHHHHHHHHTT-CCCEEE----CSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHH----HCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc-CCCEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence 4443 3434344 567788753 677899999999987 889887 56776566676 999999976
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00088 Score=78.94 Aligned_cols=154 Identities=20% Similarity=0.288 Sum_probs=88.9
Q ss_pred cCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCC-------c--eEEEEEEecccccE
Q psy15244 207 VEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRP-------R--HIEVQILGDKYGDV 277 (1427)
Q Consensus 207 iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIegg-------r--eieVqvl~Dg~G~v 277 (1427)
-+.++|+||..|+.|+|++++++.+++.+.++.. ...++||+||+++ + ++.+-++..+.-.
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---------~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~- 215 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYN- 215 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHHH---------TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCC-
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---------CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCE-
Confidence 3578999999999999999999999988776531 3689999999853 2 5555555543211
Q ss_pred EEee----eeccc-------------------cccccce-EE--EEccC---------------CCCCHHHHHHHHHHHH
Q psy15244 278 VHLY----ERDCS-------------------MQRRYQK-VI--QIAPA---------------QDMSVSVRDAITETSV 316 (1427)
Q Consensus 278 v~l~----erd~s-------------------~qr~~qk-~i--e~aPa---------------~~l~~e~~~~l~~~a~ 316 (1427)
+.++ -|-|+ +|..+.. .. +..-- ......+..+|.+.+.
T Consensus 216 vy~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~ 295 (380)
T 3tig_A 216 IYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIR 295 (380)
T ss_dssp EEECSCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHH
T ss_pred EEEEcCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 1111 11121 1111100 00 00000 0011244556666666
Q ss_pred HHHHH----c-----CCC--CeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 317 RLAKS----L-----GYS--NAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 317 ~l~~a----l-----g~~--G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
..+.+ + ++. ....+||++|++.++++||||..++-...++. +|++..++++..-
T Consensus 296 ~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~~i~-----~l~~~~~~iavdp 360 (380)
T 3tig_A 296 VCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYA-----ELCKGIVDLAISS 360 (380)
T ss_dssp HHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTTTHH-----HHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHHhHH-----HHHHHHHHHhccc
Confidence 55543 2 122 36789999999999999999999986543321 3677777777654
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00057 Score=77.21 Aligned_cols=183 Identities=16% Similarity=0.116 Sum_probs=118.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCc--------h-hhhhhcccc-----ChHHHHHHHHHhCCCCceeeeecccc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAV--------S-HTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNS 743 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggat--------f-d~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n 743 (1427)
.+.+...++++.|.+ .|++.||++-+.+ . ..+.|-|.. +-++-++.+|+..+++++-.+
T Consensus 29 P~~~~~~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm----- 101 (267)
T 3vnd_A 29 PSPELSLKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLL----- 101 (267)
T ss_dssp SCHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEE-----
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE-----
Confidence 455778999999998 8999999984331 1 122233322 236778888887667775544
Q ss_pred cccccCCC-cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 744 LVGYSNYS-PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 744 ~vgy~~~~-~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
+|-|-. .-=.+.|++.++++|+|.+-+.|-.- +.....++.+++.|. .. +... +| ..+.+.+
T Consensus 102 --~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~--ee~~~~~~~~~~~gl---~~---i~li----aP---~t~~eri 164 (267)
T 3vnd_A 102 --LYANLVFANGIDEFYTKAQAAGVDSVLIADVPV--EESAPFSKAAKAHGI---AP---IFIA----PP---NADADTL 164 (267)
T ss_dssp --ECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCG--GGCHHHHHHHHHTTC---EE---ECEE----CT---TCCHHHH
T ss_pred --ecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCH--hhHHHHHHHHHHcCC---eE---EEEE----CC---CCCHHHH
Confidence 232100 00147899999999999998876543 567788889999998 32 2222 45 3455544
Q ss_pred HHHHHHHHHCCCCEEE---EccccCcCC--HHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHH-HHHhcCCEE
Q psy15244 823 EDLAKQLVESGAQVLC---LKDMAGLLK--PTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLA-CVKAGADIV 893 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~---i~Dt~G~l~--P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la-Ai~AGad~V 893 (1427)
..+++ .+-.-|+ +..++|..+ |..+.++++.+|+.. ++||.+ .+|.......+ ++.+|||.|
T Consensus 165 ~~i~~----~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~-~~pv~v----GfGI~~~e~~~~~~~~gADgv 232 (267)
T 3vnd_A 165 KMVSE----QGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN-APPPLL----GFGIAEPEQVRAAIKAGAAGA 232 (267)
T ss_dssp HHHHH----HCCSCEEESCCCCCC--------CHHHHHHHHHTTT-CCCEEE----CSSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHH----hCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc-CCCEEE----ECCcCCHHHHHHHHHcCCCEE
Confidence 44443 3333344 467777664 667899999999886 889887 66776566666 999999987
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00067 Score=76.91 Aligned_cols=189 Identities=20% Similarity=0.113 Sum_probs=120.2
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCc---hhh------hhhccc-----cChHHHHHHHHHhCCCCceeeeeccc
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAV---SHT------CLKFLK-----ECPWERLAELRELIPNIPFQMILRGN 742 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggat---fd~------~~rfl~-----e~p~erl~~lr~~~p~~~~qml~Rg~ 742 (1427)
.++.++..++++.|.+ .|++.||++.+.. .|. +.+-+. ..-.+-++.+|+..+++++-.+
T Consensus 27 dp~~~~~~~~~~~l~~--~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm---- 100 (268)
T 1qop_A 27 DPGIEQSLKIIDTLID--AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLL---- 100 (268)
T ss_dssp SSCHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEE----
T ss_pred CCCHHHHHHHHHHHHH--CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE----
Confidence 3566889999999999 8999999986542 010 000000 0113557888888666775443
Q ss_pred ccccccC-CCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 743 SLVGYSN-YSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 743 n~vgy~~-~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
+|.+ .-..-...|++.+.++|+|.+-+.+... +.+...++.+++.|. .. +.. .+|. .+.+.
T Consensus 101 ---~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~--e~~~~~~~~~~~~g~---~~---i~l----~~p~---t~~~~ 162 (268)
T 1qop_A 101 ---MYANLVFNNGIDAFYARCEQVGVDSVLVADVPV--EESAPFRQAALRHNI---AP---IFI----CPPN---ADDDL 162 (268)
T ss_dssp ---ECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCG--GGCHHHHHHHHHTTC---EE---ECE----ECTT---CCHHH
T ss_pred ---EcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCH--HHHHHHHHHHHHcCC---cE---EEE----ECCC---CCHHH
Confidence 1211 0000136899999999999888876654 567788899999998 33 122 2452 55666
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCH--HHHHHHHHHHHHHcCCceEEEeecCCcchHHHH-HHHHHHhcCCEEEe
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKP--TAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT-TLACVKAGADIVDV 895 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P--~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An-~laAi~AGad~VD~ 895 (1427)
+..+++..... +..+.+..++|..+| ....++++.+|+.. ++||.+ +.|...++ +.+++.+|||.|=+
T Consensus 163 i~~i~~~~~g~-v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~v----ggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 163 LRQVASYGRGY-TYLLSRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQ----GFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp HHHHHHHCCSC-EEEESSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEE----ESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhhCCCc-EEEEecCCcCCCccCCCchHHHHHHHHHhcc-CCcEEE----ECCCCCHHHHHHHHHcCCCEEEE
Confidence 66655443211 223344567787544 45678899999887 788887 67877444 55559999998743
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0008 Score=73.13 Aligned_cols=175 Identities=15% Similarity=0.104 Sum_probs=118.2
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++-+++++.+.. |++.||.|-+-. +... .+.++.+|+..++.++-.-+- + . +..+.
T Consensus 10 ~~~~~~~~~~~~~~~---~~diie~G~p~~-------~~~g-~~~i~~ir~~~~~~~i~~~~~------~---~-~~~~~ 68 (211)
T 3f4w_A 10 LTLPEAMVFMDKVVD---DVDIIEVGTPFL-------IREG-VNAIKAIKEKYPHKEVLADAK------I---M-DGGHF 68 (211)
T ss_dssp CCHHHHHHHHHHHGG---GCSEEEECHHHH-------HHHT-THHHHHHHHHCTTSEEEEEEE------E---C-SCHHH
T ss_pred CCHHHHHHHHHHhhc---CccEEEeCcHHH-------Hhcc-HHHHHHHHHhCCCCEEEEEEE------e---c-cchHH
Confidence 456788899998853 899999874210 2222 467889999888887632110 0 1 11345
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
|++.+.++|+|.+.+.+.. ..+.+...++.+++.|. .+... +.+| .+ ..+.++.+.++|+|.|
T Consensus 69 ~~~~~~~~Gad~v~v~~~~-~~~~~~~~~~~~~~~g~---~~~v~------~~~~----~t---~~~~~~~~~~~g~d~i 131 (211)
T 3f4w_A 69 ESQLLFDAGADYVTVLGVT-DVLTIQSCIRAAKEAGK---QVVVD------MICV----DD---LPARVRLLEEAGADML 131 (211)
T ss_dssp HHHHHHHTTCSEEEEETTS-CHHHHHHHHHHHHHHTC---EEEEE------CTTC----SS---HHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcCCCEEEEeCCC-ChhHHHHHHHHHHHcCC---eEEEE------ecCC----CC---HHHHHHHHHHcCCCEE
Confidence 7999999999999987654 34677889999999998 44321 2233 22 3466778888999998
Q ss_pred EEccccCc---CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 838 CLKDMAGL---LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 838 ~i~Dt~G~---l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++- .|. ..+....+.++.+++.+|++||.. +.|....|...++++|||.|=+.
T Consensus 132 ~v~--~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~----~gGI~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 132 AVH--TGTDQQAAGRKPIDDLITMLKVRRKARIAV----AGGISSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp EEE--CCHHHHHTTCCSHHHHHHHHHHCSSCEEEE----ESSCCTTTHHHHHTTCCSEEEEC
T ss_pred EEc--CCCcccccCCCCHHHHHHHHHHcCCCcEEE----ECCCCHHHHHHHHHcCCCEEEEC
Confidence 873 221 111123567888888877888866 45666678888999999987543
|
| >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=75.75 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=60.8
Q ss_pred CCCCCCceecCCCeEEEEEEecCCCEEec----CCEEEEEEcCCceeeeecCCCeEEEEE--------------------
Q psy15244 1353 DSDTAGEIGAPMPGNIIEVKVKVGQQVKK----NDVLIVMSVMKTETLIHASADGVVKEI-------------------- 1408 (1427)
Q Consensus 1353 ~~~~~~~V~APm~G~v~~v~V~~Gd~V~~----G~~l~~ieamKme~~i~Ap~~G~V~~i-------------------- 1408 (1427)
++.++..|.||+.|+|+.+ .+..|.|-. |+.+++... +..++||++|+|..+
T Consensus 8 ~p~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH 83 (162)
T 1ax3_A 8 NEIGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIH 83 (162)
T ss_dssp CTTCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEE
T ss_pred CCCCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEE
Confidence 3445667999999999998 777888777 899998887 678999999999988
Q ss_pred ---------------EecCCCeeCCCCEEEEEe
Q psy15244 1409 ---------------FVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1409 ---------------~v~~G~~V~~g~~L~~i~ 1426 (1427)
+|++||.|.+||+|+++.
T Consensus 84 IGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 84 FGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp CSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred ECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999875
|
| >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A | Back alignment and structure |
|---|
Probab=97.30 E-value=6.9e-05 Score=88.96 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=61.2
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
....|.++.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 42 ~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~ 121 (369)
T 1vf7_A 42 RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAY 121 (369)
T ss_dssp CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 3457899999999999999999999999999997531
Q ss_pred --------------ceeeeecCCCeEEEEEEecCCCeeCCC--CEEEEE
Q psy15244 1393 --------------TETLIHASADGVVKEIFVEVGGQVAQN--DLVVVL 1425 (1427)
Q Consensus 1393 --------------me~~i~Ap~~G~V~~i~v~~G~~V~~g--~~L~~i 1425 (1427)
-.+.|+||++|+|.++.+++|+.|..| ++|+.|
T Consensus 122 ~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i 170 (369)
T 1vf7_A 122 LQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATV 170 (369)
T ss_dssp HHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEE
T ss_pred HHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEE
Confidence 125899999999999999999999995 788876
|
| >3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00024 Score=71.91 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=45.0
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~ 1414 (1427)
..-|.|+-|.. ++|+.|++||++++||+||+..+|.||++|+|.+++-+..+
T Consensus 51 ~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 51 EQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp HHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred hhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 34577877766 79999999999999999999999999999999998765544
|
| >3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=72.18 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=43.0
Q ss_pred CCCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1363 PMPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1363 Pm~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
..-|.|+-|.. +.|++|++|+++++||+||+..+|.||++|+|.+++-
T Consensus 46 ~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 46 EALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp HHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred hhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 45678877766 7999999999999999999999999999999999864
|
| >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00022 Score=73.71 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=57.9
Q ss_pred CCceecCCCeEEEEEEecCCCEEec----CCEEEEEEcCCceeeeecCCCeEEEE-------------------------
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKK----NDVLIVMSVMKTETLIHASADGVVKE------------------------- 1407 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~----G~~l~~ieamKme~~i~Ap~~G~V~~------------------------- 1407 (1427)
+..|.||++|+|+.+. +..|.|-+ |+.+++..+ +..++||++|+|..
T Consensus 7 ~~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGid 82 (154)
T 2gpr_A 7 NLKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLD 82 (154)
T ss_dssp CEEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSS
T ss_pred CCEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcc
Confidence 4679999999999885 77888777 899998887 36899999999998
Q ss_pred ----------EEecCCCeeCCCCEEEEEe
Q psy15244 1408 ----------IFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1408 ----------i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++|++||.|++||+|+++.
T Consensus 83 Tv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 83 TVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp GGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred hhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999875
|
| >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00033 Score=72.81 Aligned_cols=65 Identities=29% Similarity=0.423 Sum_probs=57.5
Q ss_pred CceecCCCeEEEEEEecCCCEEec----CCEEEEEEcCCceeeeecCCCeEEEEE-------------------------
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKK----NDVLIVMSVMKTETLIHASADGVVKEI------------------------- 1408 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~----G~~l~~ieamKme~~i~Ap~~G~V~~i------------------------- 1408 (1427)
..|.||++|+|+.+. +..|.|-. |+.+++.... ..++||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT 88 (161)
T 1f3z_A 13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 88 (161)
T ss_dssp EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence 469999999999986 77888777 8999988874 68999999999998
Q ss_pred ----------EecCCCeeCCCCEEEEEe
Q psy15244 1409 ----------FVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1409 ----------~v~~G~~V~~g~~L~~i~ 1426 (1427)
+|++||.|.+||+|+++.
T Consensus 89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 89 VELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred hhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999875
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.029 Score=65.70 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=142.7
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcc--ccChHHHHHHHHHhCCCCceeeeecccccccccCCCcc
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFL--KECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPA 753 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl--~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~n 753 (1427)
.+++.+++++.++.+.+ .|+..|-+.||.... +. .+.-.+-++.+++..+ ..+. +. +..
T Consensus 89 ~~ls~eei~~~~~~~~~--~G~~~i~l~gGe~p~----~~~~~~~~~~l~~~ik~~~~-i~i~--~s----------~g~ 149 (350)
T 3t7v_A 89 YRLTMEEIKETCKTLKG--AGFHMVDLTMGEDPY----YYEDPNRFVELVQIVKEELG-LPIM--IS----------PGL 149 (350)
T ss_dssp CBCCHHHHHHHHHHHTT--SCCSEEEEEECCCHH----HHHSTHHHHHHHHHHHHHHC-SCEE--EE----------CSS
T ss_pred eeCCHHHHHHHHHHHHH--CCCCEEEEeeCCCCc----cccCHHHHHHHHHHHHhhcC-ceEE--Ee----------CCC
Confidence 45899999999998877 799988776654211 10 0111334455555432 2221 21 122
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNY 821 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~ 821 (1427)
+..+.+++.+++|++.+.+..-.. +.+....+++.+++.|. .+...+.+. - .-+.+.
T Consensus 150 ~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi---~v~~~~i~G----l----get~e~ 218 (350)
T 3t7v_A 150 MDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGY---CVEDGILTG----V----GNDIES 218 (350)
T ss_dssp CCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTC---EEEEEEEES----S----SCCHHH
T ss_pred CCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC---eEccceEee----c----CCCHHH
Confidence 345668888899999877533222 23466788999999999 777766665 1 257888
Q ss_pred HHHHHHHHHHCCCCEEEEc------ccc----CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCC
Q psy15244 822 YEDLAKQLVESGAQVLCLK------DMA----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~------Dt~----G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad 891 (1427)
+.+.++.+.+.+++.+.+- +|- .-.++.+..+++...|-.+|++.|-.-++ ..+......|+.+||+
T Consensus 219 ~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~~---~~g~~~~~~~l~~Gan 295 (350)
T 3t7v_A 219 TILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLD---LEGIDGMVLRLNAGAN 295 (350)
T ss_dssp HHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEHH---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCcccccc---ccChhHHHHHHhcCCc
Confidence 9999999999999977652 331 12455678888888888888654443222 3344567899999999
Q ss_pred EEEeccccC----CCCC-------CCCcHHHHHHHHHhCCCCC
Q psy15244 892 IVDVAADSM----SGIC-------SQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 892 ~VD~av~Gm----G~~t-------gn~~lE~vv~~L~~~g~~t 923 (1427)
.+..++..- |-.. ++.+.++++..++..|+.+
T Consensus 296 ~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 338 (350)
T 3t7v_A 296 IVTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMGMKP 338 (350)
T ss_dssp EEEEECCSSCCCCCSSCTTTTCSSCCCCHHHHHHHHHHHTCEE
T ss_pred eecCCCCCCCCCCCCCCCcccchhccCCHHHHHHHHHHcCCcc
Confidence 999998776 2221 2468899999999888764
|
| >4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A | Back alignment and structure |
|---|
Probab=96.93 E-value=5.4e-05 Score=89.61 Aligned_cols=66 Identities=35% Similarity=0.453 Sum_probs=58.8
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
+...|.+|.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~ 110 (369)
T 4dk0_A 31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQK 110 (369)
T ss_dssp SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSS
T ss_pred eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4668999999999999999999999999999997631
Q ss_pred ------------------------------------------ceeeeecCCCeEEEEEEecCCCeeCCCCE
Q psy15244 1393 ------------------------------------------TETLIHASADGVVKEIFVEVGGQVAQNDL 1421 (1427)
Q Consensus 1393 ------------------------------------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~ 1421 (1427)
-.+.|+||++|+|.++.+++|+.|..|+.
T Consensus 111 ~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~ 181 (369)
T 4dk0_A 111 ATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQT 181 (369)
T ss_dssp CSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTS
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCC
Confidence 11359999999999999999999999987
|
| >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0018 Score=76.35 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=59.0
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC----CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM----KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam----Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..-+.||..| +++..|+.||.|++||+|+.++.| +++.+|.||.+|+|..+ .....|..||.|+.|.
T Consensus 267 ~~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia 337 (354)
T 3cdx_A 267 DAYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVM 337 (354)
T ss_dssp GGEEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEE
T ss_pred cEEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEe
Confidence 3457899999 788889999999999999999996 79999999999999755 4788999999999764
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0051 Score=73.19 Aligned_cols=267 Identities=18% Similarity=0.187 Sum_probs=127.0
Q ss_pred CCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 749 NYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 749 ~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
.++.+...+.++...+.|++.+-+-.+.+ .+.+..+++.+++.+. ..... .+. |...+. ++.
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~p~~-~~~~~~~~~~i~~~~~---~~~v~-~~~---------r~~~~d----i~~ 82 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTTPVA-SPQSRKDAEVLASLGL---KAKVV-THI---------QCRLDA----AKV 82 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECCTTS-CHHHHHHHHHHHTSCC---SSEEE-EEE---------ESCHHH----HHH
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcCCcC-CHHHHHHHHHHHhcCC---CcEEE-EEc---------ccChhh----HHH
Confidence 45555566677777788888888855443 3445566666666655 21111 111 222322 355
Q ss_pred HHHCCCCEEEEccccCc-------CCH----HHHHHHHHHHHHHcCCceEEEeecCCcch----HHHHHHHHHHhcCCEE
Q psy15244 829 LVESGAQVLCLKDMAGL-------LKP----TAAKLLIGSFREKYPNILIHVHTHDMAGT----GVATTLACVKAGADIV 893 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~-------l~P----~~~~~lv~~lr~~~p~ipi~~H~Hnd~Gl----A~An~laAi~AGad~V 893 (1427)
+.++|++.|.+.+.+-- .++ +.+.+.|+.+|+.-+.+.+.+.+=+-+.. .+..+-++.++ |+.|
T Consensus 83 a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i 161 (382)
T 2ztj_A 83 AVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRV 161 (382)
T ss_dssp HHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEE
T ss_pred HHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEE
Confidence 55677777777654332 122 23555566666553235666655443321 23334455566 7765
Q ss_pred EeccccCCCCCCCC-cHHHHHHHHHhC---CCCCCCChh--hHHHHHHHHHH-HhCCCC-----------CCCCc---c-
Q psy15244 894 DVAADSMSGICSQP-AMGTIVSCLENT---DKRCGIDLH--DVCDYSSYWRK-VRELYA-----------PAHNL---L- 951 (1427)
Q Consensus 894 D~av~GmG~~tgn~-~lE~vv~~L~~~---g~~tgidl~--~L~~l~~~v~~-~~g~~~-----------~~~kp---i- 951 (1427)
..+ -+-|. ..| ...+++..|+.. +...++..+ .=..+++.++- ..|... .-|-+ +
T Consensus 162 ~l~--DT~G~-~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv 238 (382)
T 2ztj_A 162 GLA--DTVGV-ATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGERNGITPLGGFL 238 (382)
T ss_dssp EEE--ETTSC-CCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHH
T ss_pred Eec--CCCCC-CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccccccchhHHHHH
Confidence 432 11111 123 234555555432 111111100 00011111111 122211 00111 0
Q ss_pred ----------cccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecC---CCccHHHHHHHHHHCCCCHHHHH
Q psy15244 952 ----------WRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEI---PGGQYTNLKFRTMSFGLDFEDVK 1018 (1427)
Q Consensus 952 ----------vG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~---pGg~~snl~~ql~~~gl~~~ev~ 1018 (1427)
+-.++....+...++++.+....+-|+. ..++|. .++.|+. ++|++.|.
T Consensus 239 ~~L~~~~~~g~~t~idl~~L~~~s~~v~~~~~~~~~~~-~p~vG~--~~f~h~sGiH~~g~~k~~--------------- 300 (382)
T 2ztj_A 239 ARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVEIPFN-NYITGE--TAFSHKAGMHLKAIYINP--------------- 300 (382)
T ss_dssp HHHHHHCHHHHHHHSCGGGHHHHHHHHHHHHTCCCCTT-CTTTST--TTTEECCHHHHHHHHHCG---------------
T ss_pred HHHHhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCcC-CCcCCc--chhheecccCCchhhcCh---------------
Confidence 1123445677788999999998888887 556664 5677777 88887663
Q ss_pred HHHHHHH-HHcCCCCccccchhhHHHHHHHHHHcCCCh
Q psy15244 1019 RAYRTAN-FLLGDIIKCTPSSKVVADLAIFMTQEKLSY 1055 (1427)
Q Consensus 1019 ~~~~~v~-~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~ 1055 (1427)
+.|..++ +++|++.+|+|+||++|.+|++++...+.+
T Consensus 301 ~~Ye~~~P~~vG~~~~v~~~s~~sG~~av~~~l~~~g~ 338 (382)
T 2ztj_A 301 EAYEPYPPEVFGVKRKLIIASRLTGRHAIKARAEELGL 338 (382)
T ss_dssp GGGCSSCGGGGTCCCEECCC------------------
T ss_pred hhhcccCHHHcCCccEEEecccchhHHHHHHHHHHhCC
Confidence 1333333 789999999999999999999988776554
|
| >3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0022 Score=65.74 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=41.3
Q ss_pred CCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1364 MPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1364 m~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
.-|.|+-|.. ++|+.|++|+++++||++|.-.+|.||++|+|.+++-
T Consensus 57 ~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 57 ALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 3466776655 7899999999999999999999999999999998863
|
| >3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0055 Score=71.45 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC----CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1355 DTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM----KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1355 ~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam----Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
....-|.||..| ++...|+.||.|++||+|+.|..+ ..+.+|+||.+|+|.... ..-.|..|+.|+.|-
T Consensus 255 ~~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~Ia 327 (331)
T 3na6_A 255 DGDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVIG 327 (331)
T ss_dssp CSCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEEE
T ss_pred CCcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEe
Confidence 345678999999 667789999999999999999997 467899999999997654 457888999998773
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=63.14 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=41.9
Q ss_pred CCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1382 NDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1382 G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|..++.+|+|+....|.||.+|+|.++++++||.|++||+|++++
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 455688999999999999999999999999999999999999987
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.007 Score=53.90 Aligned_cols=68 Identities=26% Similarity=0.304 Sum_probs=50.2
Q ss_pred ccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEE
Q psy15244 1289 LNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNI 1368 (1427)
Q Consensus 1289 v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v 1368 (1427)
+.+++.|...+|.++.|+.+ .. |..-..++-. .....|.||+.|+|
T Consensus 2 v~a~~~G~v~~~~v~~G~~V-----------~~-G~~l~~i~~~----------------------~~~~~i~ap~~G~v 47 (72)
T 1z6h_A 2 VSIQMAGNLWKVHVKAGDQI-----------EK-GQEVAILESM----------------------KMEIPIVADRSGIV 47 (72)
T ss_dssp EECCSSEEEEEECCCTTCEE-----------CT-TCEEEEEEET----------------------TEEEEEECSSCEEE
T ss_pred EECcccEEEEEEEcCCcCEE-----------CC-CCEEEEEECC----------------------ccEEEEECCCCcEE
Confidence 45677888888888888876 22 3222222211 02357999999999
Q ss_pred EEEEecCCCEEecCCEEEEEEc
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
.++.+++|+.|++|++|+.|..
T Consensus 48 ~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 48 KEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EEESSCTTCEECTTCEEEEEGG
T ss_pred EEEecCCCCEECCCCEEEEEeC
Confidence 9999999999999999999865
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0041 Score=74.64 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCCC---C-CCC--Ccc-ccCCCHHHHHHHHHhcC-CcEEEeecCCCCC----cCeEEecCHHHHHHHHHH
Q psy15244 172 KVLARDAALKADV---P-IIP--GTT-EPVTDVDKVKEFCDEVE-FPVILKAAFGGGG----RGMRMVANKDAIEENFKR 239 (1427)
Q Consensus 172 K~~~r~~a~~aGV---p-vp~--~~~-~~v~s~eea~~~a~~iG-yPvVVKP~~GgGG----rGV~iV~s~eeL~~a~~~ 239 (1427)
-+..|+++.++++ | +.+ +.. ....|.+++.+.++.+| ||+|+|+..-.|| -||+++.|++|+.+++.+
T Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ 87 (425)
T 3mwd_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (425)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHH
Confidence 3578889999998 4 222 321 12346699999999998 9999999763333 389999999999998876
Q ss_pred HHHHHHHcc----CCCcEEEEeeccC--CceEEEEEEecccccEEEe
Q psy15244 240 AQSEALASF----GKDDMLVEKYIDR--PRHIEVQILGDKYGDVVHL 280 (1427)
Q Consensus 240 a~~ea~~~f----g~~~vlVEeyIeg--greieVqvl~Dg~G~vv~l 280 (1427)
......... .-..++||++++. ++|+-+.+..|..|.++.+
T Consensus 88 ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~ 134 (425)
T 3mwd_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (425)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred HHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEE
Confidence 543221100 0245999999975 4899999999988776654
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.032 Score=62.67 Aligned_cols=182 Identities=12% Similarity=0.017 Sum_probs=110.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCc---hhh------hhhccc--cCh---HHHHHHHHHhCCCCceeeeecccc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAV---SHT------CLKFLK--ECP---WERLAELRELIPNIPFQMILRGNS 743 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggat---fd~------~~rfl~--e~p---~erl~~lr~~~p~~~~qml~Rg~n 743 (1427)
.+.++..++++.+.+ .|++.||++.+.. .|. +.+-+. -++ ++.++.+|+. .++++-.+.+
T Consensus 29 ~~~~~~~~~~~~l~~--~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~-~~~Pv~~m~~--- 102 (262)
T 1rd5_A 29 PDLATTAEALRLLDG--CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE-LSCPVVLLSY--- 102 (262)
T ss_dssp SCHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG-CSSCEEEECC---
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEEec---
Confidence 345789999999998 7999999975432 010 000000 011 3556677765 5666544321
Q ss_pred cccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 744 LVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 744 ~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.+-+....++.+.++|+|.+.+.+... +.+...++.+++.|. ..... . +| ..+.+.+.
T Consensus 103 -------~~~~~~~~~~~a~~aGadgv~v~d~~~--~~~~~~~~~~~~~g~---~~i~~---~----a~---~t~~e~~~ 160 (262)
T 1rd5_A 103 -------YKPIMFRSLAKMKEAGVHGLIVPDLPY--VAAHSLWSEAKNNNL---ELVLL---T----TP---AIPEDRMK 160 (262)
T ss_dssp -------SHHHHSCCTHHHHHTTCCEEECTTCBT--TTHHHHHHHHHHTTC---EECEE---E----CT---TSCHHHHH
T ss_pred -------CcHHHHHHHHHHHHcCCCEEEEcCCCh--hhHHHHHHHHHHcCC---ceEEE---E----CC---CCCHHHHH
Confidence 111111124458899999988876443 457788888999998 32211 1 33 24444443
Q ss_pred HHHHHHHHCCCCEEEE---ccccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEec
Q psy15244 824 DLAKQLVESGAQVLCL---KDMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i---~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~a 896 (1427)
.++ +.+.+.+++ ..+.|. ..+....++++.+++.. ++||.+ ..|.. ..|+.+++++|||.|-+.
T Consensus 161 ~~~----~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~-~~pI~v----gGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 161 EIT----KASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAV----GFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHH----HHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEE----ESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHH----hcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc-CCeEEE----ECCcCCHHHHHHHHHcCCCEEEEC
Confidence 333 334443433 333555 23455778999999887 888887 77888 677778888999988643
|
| >3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.01 Score=70.09 Aligned_cols=65 Identities=25% Similarity=0.256 Sum_probs=55.8
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEc------CCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV------MKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea------mKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
.-|.||..| ++...|+.||.|++||+|+.|.. -....+|+||.+|+|.. ....-.|..|+.|+.|
T Consensus 291 ~~v~A~~~G-l~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~--~~~~p~V~~G~~l~~i 361 (368)
T 3fmc_A 291 RKFHAPKAG-MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL--HFASASVHQGTELYKV 361 (368)
T ss_dssp EEEECSSCE-EEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE--ECSSSEECTTCEEEEE
T ss_pred EEEecCCCE-EEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE--EeCCCccCCCCEEEEE
Confidence 458999999 66799999999999999999998 34678999999999964 4566889999999876
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.69 Score=52.33 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=158.8
Q ss_pred CCCeEEeecCcccCCCCCCCccc---CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc-----ChHHHHHHHH
Q psy15244 656 LKHILLTDTTFRDAHQSLLATRV---RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE-----CPWERLAELR 727 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a~r~---~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e-----~p~erl~~lr 727 (1427)
++.|.|-++++-.|.-. ..+.+ +.++++..++.+.. .|.+.+|.- .| ++.+ +-.+.++.+|
T Consensus 25 m~~v~v~~~~~g~g~p~-i~v~l~~~~~~e~~~~~~~~~~--~gaD~VElR----vD----~l~~~~~~~~v~~~l~~lr 93 (276)
T 3o1n_A 25 MKTVTVRDLVVGEGAPK-IIVSLMGKTITDVKSEALAYRE--ADFDILEWR----VD----HFANVTTAESVLEAAGAIR 93 (276)
T ss_dssp CCCEEETTEEETSSSCE-EEEEECCSSHHHHHHHHHHHTT--SCCSEEEEE----GG----GCTTTTCHHHHHHHHHHHH
T ss_pred ceEEEECCEEeCCCCcE-EEEEeCCCCHHHHHHHHHHHhh--CCCCEEEEE----ec----cccccCcHHHHHHHHHHHH
Confidence 35688888888888542 23344 34555555555554 699999962 12 2221 2235567788
Q ss_pred HhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcC-CCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEee
Q psy15244 728 ELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAG-IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYA 806 (1427)
Q Consensus 728 ~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~G-id~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t 806 (1427)
+..++.|+-.-+|...-=|-....++...+.++.+++.| +|.+-|=....+ +.++..++.+++.|. .+- ++|-
T Consensus 94 ~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~-~~~~~l~~~a~~~~~---kvI--~S~H 167 (276)
T 3o1n_A 94 EIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGD-DEVKATVGYAHQHNV---AVI--MSNH 167 (276)
T ss_dssp HHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCH-HHHHHHHHHHHHTTC---EEE--EEEE
T ss_pred HhcCCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCH-HHHHHHHHHHHhCCC---EEE--EEee
Confidence 888888888878865433444455666778899999999 899888665443 456666777777776 442 3443
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHH---HcCCceEEEeecCCcchHHHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFRE---KYPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~---~~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
||... -+.+.+.+..+++.+.|||++-|+=|+ -.+.++.+|..+.++ ..++.|+-.- |.-.+|...-+
T Consensus 168 -df~~t----P~~~el~~~~~~~~~~GaDIvKia~~a--~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~--~MG~~G~~SRi 238 (276)
T 3o1n_A 168 -DFHKT----PAAEEIVQRLRKMQELGADIPKIAVMP--QTKADVLTLLTATVEMQERYADRPIITM--SMSKTGVISRL 238 (276)
T ss_dssp -ESSCC----CCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTCCSCCEEE--ECSGGGTHHHH
T ss_pred -cCCCC----cCHHHHHHHHHHHHHcCCCEEEEEecC--CChHHHHHHHHHHHHHHhcCCCCCEEEE--ECCCchhhHHH
Confidence 44211 246889999999999999999998665 456677777776543 3457776543 44455556666
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
.+--.|--+.-+++ |-.--+||.+.+++-..|+.
T Consensus 239 ~~~~~GS~vTf~~l-~~~sAPGQl~~~~l~~~l~~ 272 (276)
T 3o1n_A 239 AGEVFGSAATFGAV-KKASAPGAISVADLRTVLTI 272 (276)
T ss_dssp CHHHHTCCEEECBS-SCCSSTTCCBHHHHHHHHHH
T ss_pred HHHHhCCceEecCC-CCCCCCCCCCHHHHHHHHHH
Confidence 77778888888887 55667999999998887764
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.015 Score=52.97 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=30.0
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
..|.||+.|+|.++++++|+.|+.|++|+.|+
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 57899999999999999999999999999885
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.41 Score=55.65 Aligned_cols=216 Identities=12% Similarity=0.091 Sum_probs=135.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccc-cChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLK-ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~-e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
.+++.+++++.++.+.+ .|+..+-+.||... +++ +.-.+-++.+++. +..+. +.. | .+
T Consensus 82 ~~ls~eei~~~i~~~~~--~g~~~i~~~gGe~p-----~~~~~~~~~li~~i~~~--~~~i~--~s~----g------~l 140 (348)
T 3iix_A 82 YRMTPEEIVERARLAVQ--FGAKTIVLQSGEDP-----YXMPDVISDIVKEIKKM--GVAVT--LSL----G------EW 140 (348)
T ss_dssp CBCCHHHHHHHHHHHHH--TTCSEEEEEESCCG-----GGTTHHHHHHHHHHHTT--SCEEE--EEC----C------CC
T ss_pred eeCCHHHHHHHHHHHHH--CCCCEEEEEeCCCC-----CccHHHHHHHHHHHHhc--CceEE--Eec----C------CC
Confidence 35899999999998887 69988888776521 112 1112334444443 22222 221 1 12
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
..+.++...++|++.+.+..-.. +.+....+++.+++.|. .+...+.+. -| ..+.+.+
T Consensus 141 ~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi---~v~~~~i~G----~p---~et~e~~ 210 (348)
T 3iix_A 141 PREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGY---ETGAGSMVG----LP---GQTIDDL 210 (348)
T ss_dssp CHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTC---EEEECBEES----CT---TCCHHHH
T ss_pred CHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCC---eeccceEEe----CC---CCCHHHH
Confidence 34567888889999887643322 34567788999999998 665554443 45 3688899
Q ss_pred HHHHHHHHHCCCCEEEE------cccc----CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcch---HHHHHHHHHHhc
Q psy15244 823 EDLAKQLVESGAQVLCL------KDMA----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGT---GVATTLACVKAG 889 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i------~Dt~----G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~Gl---A~An~laAi~AG 889 (1427)
.+.++.+.+.|++.+.+ .+|- ....+.+..+++..+|..+|++.|-. +.+. +......|+.+|
T Consensus 211 ~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~----~~~~~~~~~~~~~~~l~~G 286 (348)
T 3iix_A 211 VDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPA----TTAMGTIVPGGREITLRCG 286 (348)
T ss_dssp HHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBC----CHHHHHHSTTHHHHHHTTT
T ss_pred HHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCchh----cchhhhcCHHHHHHHHhcC
Confidence 99999999999886553 2331 23456888889999998888753332 2221 112345788999
Q ss_pred CCEEEeccccCCCC------C--------CCCcHHHHHHHHHhCCCCCCCC
Q psy15244 890 ADIVDVAADSMSGI------C--------SQPAMGTIVSCLENTDKRCGID 926 (1427)
Q Consensus 890 ad~VD~av~GmG~~------t--------gn~~lE~vv~~L~~~g~~tgid 926 (1427)
|+.|-..+.+-+-| . ..-+.++++..++..|+.+..+
T Consensus 287 an~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 337 (348)
T 3iix_A 287 ANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVMKMIELLGRKPGRD 337 (348)
T ss_dssp CCEECCBCCCTTTGGGCCSSSCCTTTTSCTTCHHHHHHHHHHHTTCEECSS
T ss_pred CcEEeCCCCchhcccccccCCCCcccCCCchhhHHHHHHHHHHcCCEeCCC
Confidence 99987444433321 1 1124677888888777765544
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.028 Score=50.12 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=50.5
Q ss_pred eeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCe
Q psy15244 1287 IFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPG 1366 (1427)
Q Consensus 1287 v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G 1366 (1427)
..+.+++.|...+|.++.|+.+ .. |..-..++-. .....|.||..|
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V-----------~~-G~~l~~i~~~----------------------~~~~~i~ap~~G 51 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRV-----------RV-GQGLLVLEAM----------------------KMENEIPSPRDG 51 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEE-----------CT-TCEEEEEEET----------------------TEEEEEECSSSE
T ss_pred eEEecCCCEEEEEEEcCCCCEe-----------CC-CCEEEEEecc----------------------cceEEEeCCCCE
Confidence 4566788888888888888876 22 3222222211 013479999999
Q ss_pred EEEEEEecCCCEEecCCEEEEEE
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
+|.++.+++|+.|..|++|+.|+
T Consensus 52 ~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 52 VVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp EEEEECCCTTCEECTTCEEEEEC
T ss_pred EEEEEEcCCcCEECCCCEEEEEC
Confidence 99999999999999999999875
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0097 Score=76.58 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=79.4
Q ss_pred HHHHHHHHHhCCCC------CCCCcc-ccCCCHHHHHHHHHhcC-CcEEEeecCCCCCc----CeEEecCHHHHHHHHHH
Q psy15244 172 KVLARDAALKADVP------IIPGTT-EPVTDVDKVKEFCDEVE-FPVILKAAFGGGGR----GMRMVANKDAIEENFKR 239 (1427)
Q Consensus 172 K~~~r~~a~~aGVp------vp~~~~-~~v~s~eea~~~a~~iG-yPvVVKP~~GgGGr----GV~iV~s~eeL~~a~~~ 239 (1427)
-+..|+++.++++| .+++.. ...++.+++.+.++.+| +|+|+|+..-.||| ||+++.|++|+.+++.+
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~ 87 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHH
Confidence 36788999999998 334431 12235588888888888 99999997655554 79999999999998876
Q ss_pred HHHHHHHccC----CCcEEEEeeccC--CceEEEEEEecccccEEEee
Q psy15244 240 AQSEALASFG----KDDMLVEKYIDR--PRHIEVQILGDKYGDVVHLY 281 (1427)
Q Consensus 240 a~~ea~~~fg----~~~vlVEeyIeg--greieVqvl~Dg~G~vv~l~ 281 (1427)
.........+ -..++||++++. ++|+-+.+..|..|.++.+.
T Consensus 88 iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH 135 (829)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEE
Confidence 5432211000 245899999974 48999999999887766543
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.027 Score=50.76 Aligned_cols=71 Identities=25% Similarity=0.279 Sum_probs=51.3
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....+.+++.|...+|.++.|+.+ .. |..-..++-. .....|.||+
T Consensus 7 ~~~~v~a~~~G~v~~~~v~~G~~V-----------~~-G~~L~~l~~~----------------------~~~~~i~Ap~ 52 (77)
T 1dcz_A 7 GEGEIPAPLAGTVSKILVKEGDTV-----------KA-GQTVLVLEAM----------------------KMETEINAPT 52 (77)
T ss_dssp CSSEEEBSSSCEEEEECCCTTCEE-----------CT-TSEEEEEEET----------------------TEEEEEECSS
T ss_pred CCeEEECCCCEEEEEEEcCCcCEE-----------cC-CCEEEEEEcc----------------------ceeEEEECCC
Confidence 345667788888888888888775 22 3222222110 0135799999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.|+|.++.+++|+.|..|++|+.||
T Consensus 53 ~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 53 DGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CEEEEEEecCCcCEECCCCEEEEEC
Confidence 9999999999999999999999885
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.02 Score=51.81 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
...|.||..|+|.++++++|+.|..|++|+.|+
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 44 TVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred EEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.025 Score=51.45 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 3679999999999999999999999999999864
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=95.26 E-value=0.37 Score=55.03 Aligned_cols=184 Identities=11% Similarity=0.159 Sum_probs=105.0
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEcccc------CcCCHHHHHHHH---HHHHHHcCCceE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKDMA------GLLKPTAAKLLI---GSFREKYPNILI 867 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~Dt~------G~l~P~~~~~lv---~~lr~~~p~ipi 867 (1427)
.+-+-+..|-| +-.|.++| +.+..++.++++.+.|||+|-|.=.. .+...+++.+++ +++++.+ ++||
T Consensus 41 ~iMgilNvTPD-SFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpi 118 (297)
T 1tx2_A 41 LIMGILNVTPD-SFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPI 118 (297)
T ss_dssp EEEEECCCCCC-TTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCE
T ss_pred EEEEEEeCCCC-ccccCCccCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceE
Confidence 44455555544 12234555 67999999999999999999887211 222245565555 7778877 8999
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------CCCCCCC-C--hhhHHHHHHHHH
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------TDKRCGI-D--LHDVCDYSSYWR 938 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~g~~tgi-d--l~~L~~l~~~v~ 938 (1427)
.+++.+ ...+.+|+++|+++|+-...+ ..-+.+-.+++.... ....+.+ | .+.+..+.+.++
T Consensus 119 SIDT~~-----~~V~~aAl~aGa~iINdvsg~----~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~ 189 (297)
T 1tx2_A 119 SIDTYK-----AEVAKQAIEAGAHIINDIWGA----KAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIK 189 (297)
T ss_dssp EEECSC-----HHHHHHHHHHTCCEEEETTTT----SSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHH
T ss_pred EEeCCC-----HHHHHHHHHcCCCEEEECCCC----CCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHH
Confidence 999875 566678999999999644322 223555444443321 1001111 1 123445555666
Q ss_pred HHhCCCCCCCCcccccch-hhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEe
Q psy15244 939 KVRELYAPAHNLLWRCGI-DLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLY 993 (1427)
Q Consensus 939 ~~~g~~~~~~kpivG~~~-f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~ 993 (1427)
.....-+++.+.++--++ |.. ...|.--+.+.-..+..+.+|-+.|.++.-+++
T Consensus 190 ~a~~~GI~~~~IilDPg~Gfgk-~~~~n~~ll~~l~~l~~lg~Pvl~G~Srksfig 244 (297)
T 1tx2_A 190 IAKDAGVRDENIILDPGIGFAK-TPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIG 244 (297)
T ss_dssp HHHHTTCCGGGEEEECCTTSSC-CHHHHHHHHHTGGGGGGGCSCBEEECTTCHHHH
T ss_pred HHHHcCCChhcEEEeCCCCcCC-CHHHHHHHHHHHHHHHhCCCCEEEEeccchhhh
Confidence 665555666665554444 422 333443444433334445556666665544443
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.35 Score=54.90 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=108.0
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEcc-cc--C------cCCHHHHHHHHHHHHHHcCCceE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKD-MA--G------LLKPTAAKLLIGSFREKYPNILI 867 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~D-t~--G------~l~P~~~~~lv~~lr~~~p~ipi 867 (1427)
.+-+-|..|.|=++ |.+++ +.+..++.++++.+.|||+|-|.= ++ | --...++..+|+++++.+ ++||
T Consensus 16 ~imGilN~TpdSFs-dgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~pi 93 (282)
T 1aj0_A 16 HVMGILNVTPDSFS-DGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWI 93 (282)
T ss_dssp EEEEEEECCTTTSC-CCCCCTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEE
T ss_pred EEEEEEeCCCCccc-cccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeE
Confidence 45566777766332 34555 689999999999999999998864 21 2 111234566778888887 8999
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------C-CCCC------CCC---hhhHH
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------T-DKRC------GID---LHDVC 931 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~-g~~t------gid---l~~L~ 931 (1427)
.+++.+ ...+.+|+++|+++|+-...+ .-+.+-.+++...- . |... .++ .+.+.
T Consensus 94 SIDT~~-----~~va~aAl~aGa~iINdvsg~-----~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~ 163 (282)
T 1aj0_A 94 SVDTSK-----PEVIRESAKVGAHIINDIRSL-----SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNR 163 (282)
T ss_dssp EEECCC-----HHHHHHHHHTTCCEEEETTTT-----CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHH
T ss_pred EEeCCC-----HHHHHHHHHcCCCEEEECCCC-----CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHH
Confidence 999987 566679999999999755432 34555555544331 1 1111 111 11244
Q ss_pred HHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEe
Q psy15244 932 DYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLY 993 (1427)
Q Consensus 932 ~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~ 993 (1427)
.+.+.++.....-+++++=++--++.-.+...|.-.+.+.-..+..+.+|-+.|.++.-+++
T Consensus 164 ~l~~~i~~a~~~Gi~~~~IilDPg~gf~k~~~~n~~ll~~l~~~~~~g~P~l~G~Srksfig 225 (282)
T 1aj0_A 164 YFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIG 225 (282)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEECCTTCHHHH
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEECccHhHH
Confidence 55556666655556655533322221133444554444444444445556666666544444
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=3.2 Score=46.33 Aligned_cols=235 Identities=18% Similarity=0.157 Sum_probs=155.7
Q ss_pred CCeEEeecCcccCCCCCCC---cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccC-h----HHHHHHHHH
Q psy15244 657 KHILLTDTTFRDAHQSLLA---TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKEC-P----WERLAELRE 728 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a---~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~-p----~erl~~lr~ 728 (1427)
+.|.|=++|+=+|.- ... +.=+.++++.-++.+.. .|.+.+|.- .| |+.+. + .+.+..+|+
T Consensus 6 ~~v~v~~~~ig~g~P-kIcvpl~~~t~~e~l~~a~~~~~--~~aD~vElR----~D----~l~~~~~~~~v~~~l~~lr~ 74 (258)
T 4h3d_A 6 RKVQVKNITIGEGRP-KICVPIIGKNKKDIIKEAKELKD--ACLDIIEWR----VD----FFENVENIKEVKEVLYELRS 74 (258)
T ss_dssp CCEEETTEEETSSSC-EEEEEECCSSHHHHHHHHHHHTT--SSCSEEEEE----GG----GCTTTTCHHHHHHHHHHHHH
T ss_pred ceEEEcCEEeCCCCC-EEEEEeCCCCHHHHHHHHHHHhh--cCCCEEEEe----ec----cccccCCHHHHHHHHHHHHH
Confidence 567788888877752 111 23466888887877766 799999974 22 44331 1 345677888
Q ss_pred hCCCCceeeeecccccccccCCCcchHHHHHHHHHhcC-CCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy15244 729 LIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAG-IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAG 807 (1427)
Q Consensus 729 ~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~G-id~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~ 807 (1427)
...+.|+-.-+|...==|.....++.....++.+.+.| +|.+-|-....+ +.....++.+++.|. .+- ++| .
T Consensus 75 ~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~-~~~~~l~~~a~~~~~---kiI--~S~-H 147 (258)
T 4h3d_A 75 YIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGD-EVIDEVVNFAHKKEV---KVI--ISN-H 147 (258)
T ss_dssp HCTTSCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCH-HHHHHHHHHHHHTTC---EEE--EEE-E
T ss_pred hcCCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccH-HHHHHHHHHHHhCCC---EEE--EEE-e
Confidence 88888988888876545555556666667777888877 888888776543 345666777787776 332 334 2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHH---HHcCCceEEEeecCCcchHHHHHHH
Q psy15244 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFR---EKYPNILIHVHTHDMAGTGVATTLA 884 (1427)
Q Consensus 808 d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr---~~~p~ipi~~H~Hnd~GlA~An~la 884 (1427)
||.. --+.+.+.+...++.+.|||++-|+=|+- .+.++.+|..+.+ +..++.|+-.-+ .-.+|.-+=+.
T Consensus 148 df~~----TP~~~el~~~~~~~~~~gaDIvKia~~~~--~~~D~l~Ll~~~~~~~~~~~~~P~I~~~--MG~~G~~SRi~ 219 (258)
T 4h3d_A 148 DFNK----TPKKEEIVSRLCRMQELGADLPKIAVMPQ--NEKDVLVLLEATNEMFKIYADRPIITMS--MSGMGVISRLC 219 (258)
T ss_dssp ESSC----CCCHHHHHHHHHHHHHTTCSEEEEEECCS--SHHHHHHHHHHHHHHHHHTCSSCBEEEE--CTGGGGGGGTC
T ss_pred cCCC----CCCHHHHHHHHHHHHHhCCCEEEEEEccC--CHHHHHHHHHHHHHHHHhcCCCCEEEEe--CCCCChHHHHH
Confidence 4422 23467888999999999999999986654 5677777776544 445677765433 22334445556
Q ss_pred HHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh
Q psy15244 885 CVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 885 Ai~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
+-..|--+..+++. -.--+||.+++++-..|+-
T Consensus 220 ~~~fGS~lTf~~~~-~~sAPGQl~~~el~~~l~l 252 (258)
T 4h3d_A 220 GEIFGSALTFGAAK-SVSAPGQISFKELNSVLNL 252 (258)
T ss_dssp HHHHCBCEEECBCC----CTTCCBHHHHHHHHHH
T ss_pred HHHhCCceEeccCC-CCCCCCCCCHHHHHHHHHH
Confidence 66678777777763 4567899999988877764
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.027 Score=51.23 Aligned_cols=34 Identities=35% Similarity=0.669 Sum_probs=31.9
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.+++|++|+.|..|++|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 5689999999999999999999999999999975
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=55.56 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=21.6
Q ss_pred cceeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCC
Q psy15244 1285 ERIFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPM 1364 (1427)
Q Consensus 1285 ~~v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm 1364 (1427)
....+.+++.|...+|.++.|+.+ .. |..-..++ . ......|.||.
T Consensus 24 ~~~~v~a~~~G~v~~~~v~~Gd~V-----------~~-Gq~L~~ie---------~-------------~k~~~~i~AP~ 69 (94)
T 2jku_A 24 TSSVLRSPMPGVVVAVSVKPGDAV-----------AE-GQEICVIE---------A-------------MKMQNSMTAGK 69 (94)
T ss_dssp CCCCCCCSSSCEEEEECCCTTCCC-----------CT-TCCCEEEE---------C------------------------
T ss_pred CceEEECCCCEEEEEEECCCCCEE-----------cC-CCEEEEEe---------c-------------ccccEEEECCC
Confidence 445677888999999999989886 22 22111111 0 01235799999
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
.|+|.++.+++|+.|..|++|+.||
T Consensus 70 ~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 70 TGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp -------------------------
T ss_pred CEEEEEEcCCCcCEECCCCEEEEEC
Confidence 9999999999999999999999875
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=54.29 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=30.3
Q ss_pred eeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1395 TLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1395 ~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|.||.+|+|.++.+++|+.|++||+|++|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie 37 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 35999999999999999999999999999987
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.052 Score=60.50 Aligned_cols=179 Identities=16% Similarity=0.109 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCC--------chh-hhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGA--------VSH-TCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~gga--------tfd-~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-+++++.|.+ .|.+.||+|-|. +.. ++.|-|.. +-|+.++++|+ ++|+-++
T Consensus 26 ~~~~t~~~~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~---~~Pivlm------ 94 (252)
T 3tha_A 26 NLQTSEAFLQRLDQ--SPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKT---KKALVFM------ 94 (252)
T ss_dssp CHHHHHHHHHTGGG--SSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCC---SSEEEEE------
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhc---CCCEEEE------
Confidence 45778899999998 899999998432 222 22333332 22444444443 3443332
Q ss_pred ccccCCC-cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYS-PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~-~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
||-|-. .-=++.|++.++++|+|.+-|-|- .++......+.+++.|. .. |.+. .| ..+.+.
T Consensus 95 -~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDL--P~eE~~~~~~~~~~~Gl---~~---I~lv----aP---~t~~eR-- 156 (252)
T 3tha_A 95 -VYYNLIFSYGLEKFVKKAKSLGICALIVPEL--SFEESDDLIKECERYNI---AL---ITLV----SV---TTPKER-- 156 (252)
T ss_dssp -CCHHHHHHHCHHHHHHHHHHTTEEEEECTTC--CGGGCHHHHHHHHHTTC---EE---CEEE----ET---TSCHHH--
T ss_pred -eccCHHHHhhHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCC---eE---EEEe----CC---CCcHHH--
Confidence 343311 111578999999999999988884 34567778888999998 32 2222 34 233443
Q ss_pred HHHHHHHHCCCCEEEEc---cccCcCCH--HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 824 DLAKQLVESGAQVLCLK---DMAGLLKP--TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~---Dt~G~l~P--~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
++++.+.+-.-|++. .++|.-++ ..+.++++.+|+.. ++|+.+ -+|.......+++..+||.|
T Consensus 157 --i~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v----GfGIst~e~a~~~~~~ADGV 224 (252)
T 3tha_A 157 --VKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT-NLPIFV----GFGIQNNQDVKRMRKVADGV 224 (252)
T ss_dssp --HHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC-CSCEEE----ESSCCSHHHHHHHTTTSSEE
T ss_pred --HHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc-CCcEEE----EcCcCCHHHHHHHHhcCCEE
Confidence 444444444445554 45676544 45788999999886 888877 34555566666666677765
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=2.6 Score=49.41 Aligned_cols=211 Identities=10% Similarity=0.032 Sum_probs=131.8
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCc--hhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcch
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAV--SHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAE 754 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggat--fd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nv 754 (1427)
.++.+++++.++.+.+ .|+..|-++||.+ ..... +.-.+-++.+++. +..+. + . .|+ +
T Consensus 98 ~~s~eei~~~~~~~~~--~g~~~i~~~gg~~~p~~~~~----~~l~~ll~~ik~~--g~~i~--~--t--~G~------l 157 (369)
T 1r30_A 98 LMEVEQVLESARKAKA--AGSTRFCMGAAWKNPHERDM----PYLEQMVQGVKAM--GLEAC--M--T--LGT------L 157 (369)
T ss_dssp CCCHHHHHHHHHHHHH--TTCSEEEEEECCSSCCTTTH----HHHHHHHHHHHHT--TSEEE--E--E--CSS------C
T ss_pred cCCHHHHHHHHHHHHH--cCCcEEEEEeCCCCCCcCCH----HHHHHHHHHHHHc--CCeEE--E--e--cCC------C
Confidence 3788999999988877 6998887765421 11111 1112334455543 22221 1 1 122 2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-----------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN-----------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n-----------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
..+.++..+++|++.+.+..-.+ +.+....+++.++++|. .+...+.+. + .-+.+.+.
T Consensus 158 ~~e~l~~L~~aGvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi---~v~~~~I~G--l------~et~ed~~ 226 (369)
T 1r30_A 158 SESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI---KVCSGGIVG--L------GETVKDRA 226 (369)
T ss_dssp CHHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHC---EEECCEEEC--S------SCCHHHHH
T ss_pred CHHHHHHHHHCCCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC---eeeeeeEee--C------CCCHHHHH
Confidence 24457788889999988764444 23566788899999998 665554443 1 25788899
Q ss_pred HHHHHHHHCC--CCEEEE------ccc----cCcCCHHHHHHHHHHHHHHcCCceEEEeec-CCcchHHHHHHHHHHhcC
Q psy15244 824 DLAKQLVESG--AQVLCL------KDM----AGLLKPTAAKLLIGSFREKYPNILIHVHTH-DMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 824 ~~a~~l~~~G--ad~i~i------~Dt----~G~l~P~~~~~lv~~lr~~~p~ipi~~H~H-nd~GlA~An~laAi~AGa 890 (1427)
+.++.+.+++ ++.+.+ .+| .....+.+..+++...|..+|+..+++=+- .+.| -.....++.+||
T Consensus 227 ~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~~i~i~~~~~~l~--~~~~~~~l~~Ga 304 (369)
T 1r30_A 227 GLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMN--EQTQAMCFMAGA 304 (369)
T ss_dssp HHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSC--HHHHHHHHHHTC
T ss_pred HHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCCceEeecchhhcC--hHHHHHHhhCCC
Confidence 9999999998 777654 233 123566888889999998888754433210 1122 233456889999
Q ss_pred CEEEeccccC-CCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 891 DIVDVAADSM-SGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 891 d~VD~av~Gm-G~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
+.+ +.|- =..+++++.++.+..++..|+.+
T Consensus 305 n~~---~~g~~~~t~~~~~~~~~~~~i~~~g~~~ 335 (369)
T 1r30_A 305 NSI---FYGCKLLTTPNPEEDKDLQLFRKLGLNP 335 (369)
T ss_dssp CEE---ECSSBSSSSBCCCHHHHHHHHHHTTCCS
T ss_pred ceE---EeCCeeeCCCCCCHHHHHHHHHHcCCCe
Confidence 943 2221 01246788999999999887654
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.051 Score=51.23 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.+++|++|+.|..|++|+.|+.
T Consensus 47 ~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4678999999999999999999999999999974
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.056 Score=50.21 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCceecCCCeEEEEEEecCCC-EEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQ-QVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd-~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.+++|++|+ .|..|++|+.|+.
T Consensus 48 ~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred cceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 467999999999999999999 8999999999985
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.21 Score=58.19 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHhhcCCccEEecc--------CCCc--hhh---------hhhccccChHHHHHHHHHhCCCCceeeee
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMW--------GGAV--SHT---------CLKFLKECPWERLAELRELIPNIPFQMIL 739 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~--------ggat--fd~---------~~rfl~e~p~erl~~lr~~~p~~~~qml~ 739 (1427)
+.+..+++++...+ +|.+.+=.. .+.. |+. -++++ +-+|+.++.|.+.....-+..+.
T Consensus 33 s~e~a~~li~~ak~--aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~-~l~~e~~~~L~~~~~~~Gi~~~s 109 (349)
T 2wqp_A 33 SLKTAFEMVDAAYN--AGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERC-ALNEEDEIKLKEYVESKGMIFIS 109 (349)
T ss_dssp CHHHHHHHHHHHHH--HTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHH-CCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHH--hCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHh-CCCHHHHHHHHHHHHHhCCeEEE
Confidence 56778888888888 688877653 1111 110 01111 35788888888877665555554
Q ss_pred cccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCH
Q psy15244 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSL 819 (1427)
Q Consensus 740 Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~ 819 (1427)
.- -+ ...++...+.|+|.+.|-.. ++.|+. .++++.+.|+ ..|.-|| -.++
T Consensus 110 t~----------~d--~~svd~l~~~~v~~~KI~S~--~~~n~~-LL~~va~~gk------PviLstG--------mat~ 160 (349)
T 2wqp_A 110 TL----------FS--RAAALRLQRMDIPAYKIGSG--ECNNYP-LIKLVASFGK------PIILSTG--------MNSI 160 (349)
T ss_dssp EE----------CS--HHHHHHHHHHTCSCEEECGG--GTTCHH-HHHHHHTTCS------CEEEECT--------TCCH
T ss_pred ee----------CC--HHHHHHHHhcCCCEEEECcc--cccCHH-HHHHHHhcCC------eEEEECC--------CCCH
Confidence 32 22 22366677788999988654 233332 2444555677 2333443 4699
Q ss_pred HHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHH--HHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 820 NYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLL--IGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~l--v~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+.+...++.+.+.|.+.+-+-=+.+.=+|.....| |..||+.+|++||++=.|-+ | .+.++||+.+||++|+.=
T Consensus 161 ~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~-G--~~~~~AAvAlGA~iIEkH 236 (349)
T 2wqp_A 161 ESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTL-D--NYACLGAVALGGSILERH 236 (349)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSS-S--SHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCC-c--HHHHHHHHHhCCCEEEeC
Confidence 99999999999999854433335555555555444 88999999889999977764 4 788899999999988654
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.52 E-value=4.3 Score=45.34 Aligned_cols=235 Identities=15% Similarity=0.131 Sum_probs=155.0
Q ss_pred CCCeEEeecCcccCCCCCCC---cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc-ChH----HHHHHHH
Q psy15244 656 LKHILLTDTTFRDAHQSLLA---TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE-CPW----ERLAELR 727 (1427)
Q Consensus 656 ~~~v~i~DtTlRDG~Qsl~a---~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e-~p~----erl~~lr 727 (1427)
++.|.+-+.++..|.- ... +.=+.++++..++.+.. .|.+.+|.- .| |+.+ +++ +.+..||
T Consensus 5 ~~~~~v~~~~~g~~~p-~Icv~l~~~~~~e~~~~~~~~~~--~~~D~vElR----vD----~l~~~~~~~~v~~~l~~lr 73 (257)
T 2yr1_A 5 PKAIKVRNIWIGGTEP-CICAPVVGEDDRKVLREAEEVCR--KQPDLLEWR----AD----FFRAIDDQERVLATANGLR 73 (257)
T ss_dssp SSCEEETTEEESSSSC-EEEEEECCSSHHHHHHHHHHHHH--SCCSEEEEE----GG----GCTTTTCHHHHHHHHHHHH
T ss_pred CceEEEeeeeeCCCCc-EEEEEecCCCHHHHHHHHHHHhh--cCCCEEEEE----ee----cccccCcHHHHHHHHHHHH
Confidence 4567777777777653 112 22344565565655444 689999962 22 2322 122 3456788
Q ss_pred HhCCCCceeeeeccccccccc-CCCcchHHHHHHHHHhcC-CCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q psy15244 728 ELIPNIPFQMILRGNSLVGYS-NYSPAEVGAFCRLASQAG-IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICY 805 (1427)
Q Consensus 728 ~~~p~~~~qml~Rg~n~vgy~-~~~~nvv~~~v~~a~~~G-id~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~ 805 (1427)
+...+.|+-.-+|...-=|-. ...++...+.++.+++.| +|.+-|=....+ .+...++.+++.|. .+- ++|
T Consensus 74 ~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~--~~~~l~~~~~~~~~---kvI--~S~ 146 (257)
T 2yr1_A 74 NIAGEIPILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE--RIADVRRMTEECSV---WLV--VSR 146 (257)
T ss_dssp HHSSSCCEEEECCCTTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT--HHHHHHHHHHHTTC---EEE--EEE
T ss_pred HhccCCCEEEEEeecccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh--hHHHHHHHHHhCCC---EEE--EEe
Confidence 877778877777754333433 456666777889999998 999988777666 66677787887776 332 244
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHH--cCCceEEEeecCCcchHHHHHH
Q psy15244 806 AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREK--YPNILIHVHTHDMAGTGVATTL 883 (1427)
Q Consensus 806 t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~--~p~ipi~~H~Hnd~GlA~An~l 883 (1427)
- ||... -+.+.+.+..+++.+.|||++-|+=|+- .+.++..|..+..+. .++.|+-.-+ .-.+|...=+
T Consensus 147 H-df~~t----P~~~el~~~~~~~~~~gaDivKia~~a~--s~~D~l~ll~~~~~~~~~~~~P~I~~~--MG~~G~~SRi 217 (257)
T 2yr1_A 147 H-YFDGT----PRKETLLADMRQAERYGADIAKVAVMPK--SPEDVLVLLQATEEARRELAIPLITMA--MGGLGAITRL 217 (257)
T ss_dssp E-ESSCC----CCHHHHHHHHHHHHHTTCSEEEEEECCS--SHHHHHHHHHHHHHHHHHCSSCEEEEE--CTTTTHHHHH
T ss_pred c-CCCCC----cCHHHHHHHHHHHHhcCCCEEEEEeccC--CHHHHHHHHHHHHHHhccCCCCEEEEE--CCCCcchHHH
Confidence 3 33211 2368899999999999999999987764 477888888765542 2466754433 3344566677
Q ss_pred HHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh
Q psy15244 884 ACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 884 aAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
.+--.|--+.-+++. -..-+||.+.+++...|+.
T Consensus 218 ~~~~~GS~~Tf~~l~-~~sAPGQl~~~el~~~l~~ 251 (257)
T 2yr1_A 218 AGWLFGSAVTFAVGN-QSSAPGQIPIDDVRTVLSI 251 (257)
T ss_dssp HGGGGTBCEEECBSS-SCSSTTCCBHHHHHHHHHH
T ss_pred HHHHhCCceEecCCC-CCCCCCCCCHHHHHHHHHH
Confidence 777788778777774 4456899999998877764
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.75 Score=49.26 Aligned_cols=171 Identities=16% Similarity=0.097 Sum_probs=103.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++-+++++.+.. |+..+|++-+ + |+.. -.+-++.|++..|+.++-.-+.-. |+...
T Consensus 10 ~~~~~~~~~~~~~~~---~v~~iev~~~--~-----~~~~-g~~~i~~l~~~~~~~~i~~~l~~~----------di~~~ 68 (207)
T 3ajx_A 10 LSTEAALELAGKVAE---YVDIIELGTP--L-----IKAE-GLSVITAVKKAHPDKIVFADMKTM----------DAGEL 68 (207)
T ss_dssp SCHHHHHHHHHHHGG---GCSEEEECHH--H-----HHHH-CTHHHHHHHHHSTTSEEEEEEEEC----------SCHHH
T ss_pred CCHHHHHHHHHHhhc---cCCEEEECcH--H-----HHhh-CHHHHHHHHHhCCCCeEEEEEEec----------CccHH
Confidence 356778888888865 8888999532 1 1222 234678888887776654322211 22344
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.+.++|.|.+.+-....+ +.+..+++.+++.|. .+ .+.. .+ ..+++. .++.+.+.|+|.+
T Consensus 69 ~~~~a~~~Gad~v~vh~~~~~-~~~~~~~~~~~~~g~---~~--gv~~----~s----~~~p~~---~~~~~~~~g~d~v 131 (207)
T 3ajx_A 69 EADIAFKAGADLVTVLGSADD-STIAGAVKAAQAHNK---GV--VVDL----IG----IEDKAT---RAQEVRALGAKFV 131 (207)
T ss_dssp HHHHHHHTTCSEEEEETTSCH-HHHHHHHHHHHHHTC---EE--EEEC----TT----CSSHHH---HHHHHHHTTCSEE
T ss_pred HHHHHHhCCCCEEEEeccCCh-HHHHHHHHHHHHcCC---ce--EEEE----ec----CCChHH---HHHHHHHhCCCEE
Confidence 688999999999987665543 356777888888888 43 2211 11 234443 2345556799987
Q ss_pred EEc--cc---cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 838 CLK--DM---AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 838 ~i~--Dt---~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.+. -+ .| ..|.. +.++.++.. ++||.+= -|....|.-.++++|||.|=+
T Consensus 132 ~~~~~~~~~~~g-~~~~~--~~i~~~~~~--~~pi~v~----GGI~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 132 EMHAGLDEQAKP-GFDLN--GLLAAGEKA--RVPFSVA----GGVKVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp EEECCHHHHTST-TCCTH--HHHHHHHHH--TSCEEEE----SSCCGGGHHHHHHTTCSEEEE
T ss_pred EEEecccccccC-CCchH--HHHHHhhCC--CCCEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence 442 11 23 23444 556665542 4555442 244445888899999998743
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.93 Score=50.05 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=107.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCC---chhhhh------hcc----c-cChHHHHHHHHHhCCCCceeeeecccc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGA---VSHTCL------KFL----K-ECPWERLAELRELIPNIPFQMILRGNS 743 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~gga---tfd~~~------rfl----~-e~p~erl~~lr~~~p~~~~qml~Rg~n 743 (1427)
...++..+.++.+.+ . ++.||+.-+. ..|... +-+ + ..-.+-++.+++.. +.+++.+..
T Consensus 16 ~~~~~~~~~a~~~~~--~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~-~~pv~~~~~--- 88 (248)
T 1geq_A 16 PDKQSTLNFLLALDE--Y-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTY--- 88 (248)
T ss_dssp SCHHHHHHHHHHHGG--G-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC-CCCEEEEEC---
T ss_pred CCHHHHHHHHHHHHH--c-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC-CCCEEEEec---
Confidence 344788899999988 5 8889987221 111110 000 0 11256677787764 566665431
Q ss_pred cccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 744 LVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 744 ~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+.+.-..-..++++.+.++|+|.+.+.+-. .++.+..++.+++.|. .+-..+ +| ....+.+
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~--~~~~~~~~~~~~~~g~---~~~~~i-------~~---~t~~e~~- 149 (248)
T 1geq_A 89 ---YNPIYRAGVRNFLAEAKASGVDGILVVDLP--VFHAKEFTEIAREEGI---KTVFLA-------AP---NTPDERL- 149 (248)
T ss_dssp ---HHHHHHHCHHHHHHHHHHHTCCEEEETTCC--GGGHHHHHHHHHHHTC---EEEEEE-------CT---TCCHHHH-
T ss_pred ---cchhhhcCHHHHHHHHHHCCCCEEEECCCC--hhhHHHHHHHHHHhCC---CeEEEE-------CC---CCHHHHH-
Confidence 010000013578999999999999997543 3567778888898998 443322 23 1223332
Q ss_pred HHHHHHHHCCCC-EEEEccccCcC-----CHHHHHHHHHHHHHHcCCceEEEeecCCcchHH-HHHHHHHHhcCCEEEec
Q psy15244 824 DLAKQLVESGAQ-VLCLKDMAGLL-----KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGV-ATTLACVKAGADIVDVA 896 (1427)
Q Consensus 824 ~~a~~l~~~Gad-~i~i~Dt~G~l-----~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~-An~laAi~AGad~VD~a 896 (1427)
+.+.+. ++ .+++-...|.. .+....++++.+++.. ++||..= .|... .|....+++||+.|-+.
T Consensus 150 ---~~~~~~-~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~-~~pi~~~----GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 150 ---KVIDDM-TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAVG----FGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp ---HHHHHH-CSSEEEEECCC-------CCCHHHHHHHHHHHHHC-SSCEEEE----SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ---HHHHhc-CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc-CCCEEEE----eecCCHHHHHHHHHcCCCEEEEc
Confidence 333332 55 66655444422 2245677899999887 7777653 45555 67777778999987543
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.023 Score=52.62 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=32.6
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcC
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam 1391 (1427)
...|.||+.|+|.++++++|+.|..|++|+.|+..
T Consensus 39 ~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 39 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 46799999999999999999999999999999864
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.09 E-value=1.4 Score=50.81 Aligned_cols=189 Identities=19% Similarity=0.113 Sum_probs=95.0
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEcc-c----cCcCCHHHHHHH---HHHHHHHcCCceEE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKD-M----AGLLKPTAAKLL---IGSFREKYPNILIH 868 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~D-t----~G~l~P~~~~~l---v~~lr~~~p~ipi~ 868 (1427)
.+.+-+..|-|=+ -|.++| +.+..++.++++.+.|||+|-|.= + ..+-..+++.++ |++|++.+|++||.
T Consensus 43 ~vMGIlNvTPDSF-sdgg~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpIS 121 (318)
T 2vp8_A 43 LIMAIVNRTPDSF-YDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLIS 121 (318)
T ss_dssp EEEEEEC---------------CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred EEEEEEeCCCCcc-cCCCccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEE
Confidence 4556666664411 134444 789999999999999999998872 1 123334555555 78888888899999
Q ss_pred EeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------C-CC-CC------CCC---hhh--
Q psy15244 869 VHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------T-DK-RC------GID---LHD-- 929 (1427)
Q Consensus 869 ~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~-g~-~t------gid---l~~-- 929 (1427)
+-+=+ ...+.+|+++|+++|+-...+ . .+.+-.+++-... . |. .. .+. -+-
T Consensus 122 IDT~~-----~~VaeaAl~aGa~iINDVsg~----~-d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ 191 (318)
T 2vp8_A 122 VDTWR-----AQVAKAACAAGADLINDTWGG----V-DPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVD 191 (318)
T ss_dssp EECSC-----HHHHHHHHHHTCCEEEETTSS----S-STTHHHHHHHHTCEEEEECC-------------CCSCHHHHHH
T ss_pred EeCCC-----HHHHHHHHHhCCCEEEECCCC----C-chHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHH
Confidence 96655 456678999999999754332 1 4566555554431 1 11 10 010 011
Q ss_pred --HHHHHHHHHHHhCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCCC
Q psy15244 930 --VCDYSSYWRKVRELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIPG 997 (1427)
Q Consensus 930 --L~~l~~~v~~~~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~pG 997 (1427)
+..+.+.++.....-++.++=++--++.--+...|.-.+.+.-..+..+.+|-+.|.++.-+++++-|
T Consensus 192 ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~~lg~PvL~G~SrKsfig~~~g 261 (318)
T 2vp8_A 192 AVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGETLG 261 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCBEECCC----------
T ss_pred HHHHHHHHHHHHHHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHHhCCCCEEEEeCcchhhhhhcC
Confidence 23334445555555555555333222211223344444444434445566677888887777776654
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.85 Score=51.95 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=110.9
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CCcee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NIPFQ 736 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~~~q 736 (1427)
+.+|--+|=||.+. ++.+..++.|..+-+ .|.+.|+++|-+|--.+-.--.+..|+|+..+-+.+. +++++
T Consensus 35 lNvTPDSFsdgg~~-----~~~~~a~~~a~~~v~--~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiS 107 (294)
T 2dqw_A 35 LNLTPDSFSDGGRY-----LDPERALERAREMVA--EGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVS 107 (294)
T ss_dssp EECCC------------------CCHHHHHHHHH--HTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEE
T ss_pred EeCCCCCCCCCCCC-----CCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEE
Confidence 34555557788763 455777777777766 6999999998555322222223566777644433332 55554
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK-- 814 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~-- 814 (1427)
.= .+ .-+.+++|.++|.+++.=.... +.....+.+++.|. -+. .+.+. + +.|..
T Consensus 108 ID----------T~----~~~Va~aAl~aGa~iINdVsg~----~d~~m~~v~a~~~~---~vV-lmh~~-e-G~p~tm~ 163 (294)
T 2dqw_A 108 VD----------TR----KPEVAEEALKLGAHLLNDVTGL----RDERMVALAARHGV---AAV-VMHMP-V-PDPATMM 163 (294)
T ss_dssp EE----------CS----CHHHHHHHHHHTCSEEECSSCS----CCHHHHHHHHHHTC---EEE-EECCS-S-SCTTTGG
T ss_pred EE----------CC----CHHHHHHHHHhCCCEEEECCCC----CChHHHHHHHHhCC---CEE-EEcCC-C-CCCcccc
Confidence 32 12 2334678888899977644444 23345666777777 221 11221 0 23321
Q ss_pred --CCCC------HHHHHHHHHHHHHCCCCEEEEccc-cCcCC-HHHHHHHHHHHHHHc-CCceEEEeecC----------
Q psy15244 815 --KKYS------LNYYEDLAKQLVESGAQVLCLKDM-AGLLK-PTAAKLLIGSFREKY-PNILIHVHTHD---------- 873 (1427)
Q Consensus 815 --~~~~------~~~~~~~a~~l~~~Gad~i~i~Dt-~G~l~-P~~~~~lv~~lr~~~-p~ipi~~H~Hn---------- 873 (1427)
..|+ .+++.+.++.+.++|+..|.| |. .|..+ ..+-.++++.+++-. ++.|+-+=.-|
T Consensus 164 ~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~Iil-DPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfig~l~g~ 242 (294)
T 2dqw_A 164 AHARYRDVVAEVKAFLEAQARRALSAGVPQVVL-DPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGV 242 (294)
T ss_dssp GGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEE-ECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHHTC
T ss_pred ccCccccHHHHHHHHHHHHHHHHHHCCCCcEEE-cCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhhhhcCC
Confidence 1233 678889999999999985544 54 35555 567778888886542 47776553222
Q ss_pred -----CcchHHHHHHHHHHhcCCEEEec
Q psy15244 874 -----MAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 874 -----d~GlA~An~laAi~AGad~VD~a 896 (1427)
-.....+.+..|+++|++++.+-
T Consensus 243 p~~~~R~~~t~a~~~~a~~~Ga~IvRvH 270 (294)
T 2dqw_A 243 EDPAQRVHGSVAAHLFAVMKGVRLLRVH 270 (294)
T ss_dssp CSGGGCHHHHHHHHHHHHHTTCCEEEES
T ss_pred CchhhhHHHHHHHHHHHHHcCCcEEEcC
Confidence 12233466678899999998765
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.17 Score=55.71 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=104.3
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
-+.++..++++.|-+ .|+..||+. +-.++..+.++.+++.+|+..+ |...| . + .+
T Consensus 43 ~~~~~a~~~a~al~~--gGi~~iEvt----------~~t~~a~e~I~~l~~~~~~~~i-----GaGTV-----l-t--~~ 97 (232)
T 4e38_A 43 DNAEDIIPLGKVLAE--NGLPAAEIT----------FRSDAAVEAIRLLRQAQPEMLI-----GAGTI-----L-N--GE 97 (232)
T ss_dssp SSGGGHHHHHHHHHH--TTCCEEEEE----------TTSTTHHHHHHHHHHHCTTCEE-----EEECC-----C-S--HH
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEe----------CCCCCHHHHHHHHHHhCCCCEE-----eECCc-----C-C--HH
Confidence 345789999999988 799999984 2245677889999999886432 22112 1 1 34
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.|+++|.+.+.. +-.+ ...++++++.|. .+-.. ..|+.. +.++.++|+|.|
T Consensus 98 ~a~~Ai~AGA~fIvs--P~~~----~~vi~~~~~~gi---~~ipG-------------v~TptE----i~~A~~~Gad~v 151 (232)
T 4e38_A 98 QALAAKEAGATFVVS--PGFN----PNTVRACQEIGI---DIVPG-------------VNNPST----VEAALEMGLTTL 151 (232)
T ss_dssp HHHHHHHHTCSEEEC--SSCC----HHHHHHHHHHTC---EEECE-------------ECSHHH----HHHHHHTTCCEE
T ss_pred HHHHHHHcCCCEEEe--CCCC----HHHHHHHHHcCC---CEEcC-------------CCCHHH----HHHHHHcCCCEE
Confidence 489999999999853 2223 345566777887 33221 133333 345578999998
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
.+-=. +.+ .-.+++++++..+|++|+-- +-|....|+-..+++|+..
T Consensus 152 K~FPa-~~~---gG~~~lkal~~p~p~ip~~p----tGGI~~~n~~~~l~aGa~~ 198 (232)
T 4e38_A 152 KFFPA-EAS---GGISMVKSLVGPYGDIRLMP----TGGITPSNIDNYLAIPQVL 198 (232)
T ss_dssp EECST-TTT---THHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTTBC
T ss_pred EECcC-ccc---cCHHHHHHHHHHhcCCCeee----EcCCCHHHHHHHHHCCCeE
Confidence 87321 111 12378999998888888764 4566677888999999754
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.23 Score=47.42 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcC-CEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMG-IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elG-i~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
++++|+|+|.|.++..+++.+.+.| +++++++.+++.........-..+.. ++.+.+.+.+..+ ++|.|
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~~~--~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQV--------DAKDEAGLAKALG--GFDAV 73 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEEC--------CTTCHHHHHHHTT--TCSEE
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEe--------cCCCHHHHHHHHc--CCCEE
Confidence 4679999999999999999999999 88777765443211111111112221 2345566666654 68999
Q ss_pred EeCCCcccccHHHHHHHHHCCCceeCCC
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEFIGPA 162 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~fiGps 162 (1427)
+-..++. ....+.+.+.+.|+.++-.+
T Consensus 74 i~~~~~~-~~~~~~~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 74 ISAAPFF-LTPIIAKAAKAAGAHYFDLT 100 (118)
T ss_dssp EECSCGG-GHHHHHHHHHHTTCEEECCC
T ss_pred EECCCch-hhHHHHHHHHHhCCCEEEec
Confidence 8776643 23467778888888776433
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=3.5 Score=45.54 Aligned_cols=213 Identities=10% Similarity=0.054 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHH----HHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERL----AELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl----~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
.++++.-+..+.. .|.+.+|.- .| |+.+..++.+ +.+|+...+.|+-.-+|...-=|.....++..
T Consensus 16 ~~e~~~~~~~~~~--~~~D~vElR----vD----~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 85 (238)
T 1sfl_A 16 IEETLIQKINHRI--DAIDVLELR----ID----QFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSY 85 (238)
T ss_dssp --CHHHHHHHHTT--TTCSEEEEE----CT----TSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHH
T ss_pred HHHHHHHHHHhhh--cCCCEEEEE----ec----ccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHH
Confidence 3556666666655 689999963 11 2332234443 45566555677777777543334445566667
Q ss_pred HHHHHHHHhc-CCCEEEEeccCC-hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCC
Q psy15244 756 GAFCRLASQA-GIDIFRVFDPLN-SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833 (1427)
Q Consensus 756 ~~~v~~a~~~-Gid~~rif~~~n-d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~G 833 (1427)
.+.++.+.+. ++|.+-|=...+ +-+.++..++.+++.|. .+- ++|- ||.. --+.+.+.++.+++.+.|
T Consensus 86 ~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~---kvI--~S~H-df~~----tp~~~el~~~~~~~~~~g 155 (238)
T 1sfl_A 86 LNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNK---EVI--ISHH-NFES----TPPLDELQFIFFKMQKFN 155 (238)
T ss_dssp HHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTC---EEE--EEEE-ESSC----CCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCC---EEE--EEec-CCCC----CcCHHHHHHHHHHHHHcC
Confidence 7788888887 699988876652 44566777788887776 332 2343 3321 123688999999999999
Q ss_pred CCEEEEccccCcCCHHHHHHHHHHHHHH--cCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 834 AQVLCLKDMAGLLKPTAAKLLIGSFREK--YPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 834 ad~i~i~Dt~G~l~P~~~~~lv~~lr~~--~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
||++-|+=|+- .+.++..|..+..+. .++.|+-. -+.-.+|...=+.+--.|--+.-+++.. .--+||.+.++
T Consensus 156 aDivKia~~a~--~~~D~l~ll~~~~~~~~~~~~P~I~--~~MG~~G~~SRi~~~~~GS~~tf~~l~~-~sAPGQl~~~e 230 (238)
T 1sfl_A 156 PEYVKLAVMPH--NKNDVLNLLQAMSTFSDTMDCKVVG--ISMSKLGLISRTAQGVFGGALTYGCIGE-PQAPGQIDVTD 230 (238)
T ss_dssp CSEEEEEECCS--SHHHHHHHHHHHHHHHHHCSSEEEE--EECTGGGHHHHHTGGGGTBCEEEEBSSC-CSSTTCCBHHH
T ss_pred CCEEEEEecCC--CHHHHHHHHHHHHHHhhcCCCCEEE--EECCCCchHHHHHHHHhCCCeeecCCCC-CCCCCCCCHHH
Confidence 99999987764 477888887765542 24667433 3445566677777778888888888754 56789999999
Q ss_pred HHHHHH
Q psy15244 912 IVSCLE 917 (1427)
Q Consensus 912 vv~~L~ 917 (1427)
+...|+
T Consensus 231 l~~~l~ 236 (238)
T 1sfl_A 231 LKAQVT 236 (238)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887764
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.088 Score=50.14 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=32.7
Q ss_pred CCceecCCCeEEEEEEecCCCEE-ecCCEEEEEEcCC
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQV-KKNDVLIVMSVMK 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V-~~G~~l~~ieamK 1392 (1427)
...|.||..|+|.+++|++|+.| ..|++|+.|+...
T Consensus 50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 46799999999999999999998 9999999998643
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.32 Score=56.58 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEecc-CChHHHHHHHHHHHHHhcCCC
Q psy15244 718 CPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDP-LNSVPNLVKGMDAVQQVTGGS 796 (1427)
Q Consensus 718 ~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~-~nd~~~~~~~i~~a~~~G~~~ 796 (1427)
-+|+.++.|.+.....-+..+.. |-+. ..++...+.|++.+.|-.. ++++.- ++++.+.|+
T Consensus 75 l~~e~~~~L~~~~~~~Gi~~~st----------~fD~--~svd~l~~~~v~~~KI~S~~~~N~pL----L~~va~~gK-- 136 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKANGFKAICT----------PFDE--ESVDLIEAHGIEIIKIASCSFTDWPL----LERIARSDK-- 136 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEE----------ECSH--HHHHHHHHTTCCEEEECSSSTTCHHH----HHHHHTSCS--
T ss_pred CCHHHHHHHHHHHHHcCCcEEec----------cCCH--HHHHHHHHcCCCEEEECcccccCHHH----HHHHHhhCC--
Confidence 45666666666665554444432 1221 2366667889999988754 233443 344555677
Q ss_pred cEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ccccCcCCHHHHHH--HHHHHHHHcCCceEEEeecC
Q psy15244 797 TIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL-KDMAGLLKPTAAKL--LIGSFREKYPNILIHVHTHD 873 (1427)
Q Consensus 797 ~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i-~Dt~G~l~P~~~~~--lv~~lr~~~p~ipi~~H~Hn 873 (1427)
..|.-|| -.+++.+...++.+.+.|.+ |.| -=+.+.-+|..... .|..||+.+|++||++=-|-
T Consensus 137 ----PviLstG--------mstl~Ei~~Ave~i~~~g~~-viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt 203 (350)
T 3g8r_A 137 ----PVVASTA--------GARREDIDKVVSFMLHRGKD-LTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHE 203 (350)
T ss_dssp ----CEEEECT--------TCCHHHHHHHHHHHHTTTCC-EEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECC
T ss_pred ----cEEEECC--------CCCHHHHHHHHHHHHHcCCC-EEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCC
Confidence 2233343 46899999999988888876 455 23556666654433 47889999999999998888
Q ss_pred CcchHHHHHHHHHHhcCCEEEec
Q psy15244 874 MAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 874 d~GlA~An~laAi~AGad~VD~a 896 (1427)
+.+. .+.+++|+.+||++|..=
T Consensus 204 ~g~~-~~~~~AAvAlGA~vIEkH 225 (350)
T 3g8r_A 204 DPDL-MEPIMLAVAQGATVFEKH 225 (350)
T ss_dssp CSSC-CHHHHHHHHTTCCEEEEE
T ss_pred CCCc-cHHHHHHHHcCCCEEEEe
Confidence 6332 345689999999987653
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
|---|
Probab=93.48 E-value=0.1 Score=52.14 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=32.6
Q ss_pred CCceecCCCeEEEEEEecCCC-EEecCCEEEEEEcCC
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQ-QVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd-~V~~G~~l~~ieamK 1392 (1427)
...|.||..|+|.+++|++|| .|+.||+|++|+.-.
T Consensus 70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 467999999999999999998 899999999998643
|
| >2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.15 Score=59.42 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=53.4
Q ss_pred ceecCCCeEEEEEEecCCCEEecCCEEEEEEc----CCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1359 EIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV----MKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1359 ~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea----mKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
-+.||..|.+ ...++.|+.|++||+|+.+-. .+...+|+||.+|+|.-. ...-.|..|+.|+.|
T Consensus 259 ~~~a~~~G~~-~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~i 326 (332)
T 2qj8_A 259 QLKSPSPGIF-EPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAIL 326 (332)
T ss_dssp EEECSSSEEE-EECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEE
T ss_pred EEeCCCCeEE-EEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEE
Confidence 4789999954 588999999999999999976 567889999999999644 466778888888876
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=93.38 E-value=5 Score=45.33 Aligned_cols=183 Identities=12% Similarity=0.078 Sum_probs=103.7
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEcccc---C---cCCHHHHHHH---HHHHHHHcCCceE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKDMA---G---LLKPTAAKLL---IGSFREKYPNILI 867 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~Dt~---G---~l~P~~~~~l---v~~lr~~~p~ipi 867 (1427)
.+.+-+..|-|=++ |.+++ +.+..++.++++.+.|||+|-|.=-. | +...+++.++ |+++++. ++||
T Consensus 7 ~imgilN~TpDSFs-dgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~pi 83 (280)
T 1eye_A 7 QVMGVLNVTDDSFS-DGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITV 83 (280)
T ss_dssp EEEEEEECSCCTTC-SSCCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCE
T ss_pred EEEEEEeCCCCCcC-CCcccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEE
Confidence 45666676654222 34444 79999999999999999999887211 1 1112444444 4555543 7999
Q ss_pred EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------C-CCCC-------CC-Chh--hH
Q psy15244 868 HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------T-DKRC-------GI-DLH--DV 930 (1427)
Q Consensus 868 ~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~-g~~t-------gi-dl~--~L 930 (1427)
.+++.+ ...+.+|+++|+++|+-...+ ..-+.+-.+++-... . |... .+ |.- -+
T Consensus 84 SIDT~~-----~~va~aAl~aGa~iINdvsg~----~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~ 154 (280)
T 1eye_A 84 SIDTMR-----ADVARAALQNGAQMVNDVSGG----RADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVR 154 (280)
T ss_dssp EEECSC-----HHHHHHHHHTTCCEEEETTTT----SSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHH
T ss_pred EEeCCC-----HHHHHHHHHcCCCEEEECCCC----CCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHH
Confidence 999987 566779999999999754432 234556555554431 1 1111 11 111 14
Q ss_pred HHHHHHHHHHhCCCCCCCC----cccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecCC
Q psy15244 931 CDYSSYWRKVRELYAPAHN----LLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEIP 996 (1427)
Q Consensus 931 ~~l~~~v~~~~g~~~~~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~p 996 (1427)
..+.+.++.....-+++++ |.+| |.. ...|.-.+.+.-..+..+.+|-+.|.++.-+++++-
T Consensus 155 ~~l~~~i~~a~~~Gi~~~~IilDPg~G---f~k-~~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfi~~~~ 220 (280)
T 1eye_A 155 ADLLASVADAVAAGVDPARLVLDPGLG---FAK-TAQHNWAILHALPELVATGIPVLVGASRKRFLGALL 220 (280)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEECCTT---SSC-CHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCChhhEEEECCCC---ccc-CHHHHHHHHHHHHHhhcCCCCEEEEecchHHHHhhh
Confidence 4455556655555556555 4444 433 333444444433344446657777777765655554
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.095 Score=50.86 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=32.1
Q ss_pred CCceecCCCeEEEEEEecCCC-EEecCCEEEEEEcC
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQ-QVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd-~V~~G~~l~~ieam 1391 (1427)
...|.||..|+|.+++|++|+ .|..|++|++|+.-
T Consensus 50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 467999999999999999999 89999999999864
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=93.09 E-value=2.9 Score=47.27 Aligned_cols=204 Identities=14% Similarity=0.077 Sum_probs=116.3
Q ss_pred EeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CCceeee
Q psy15244 661 LTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NIPFQMI 738 (1427)
Q Consensus 661 i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~~~qml 738 (1427)
+|--+|=||.+. ++.+..++.|..+-+ .|.+.|.++|-+|-..+-.--.+..|+|+..+-+.+. +++++.=
T Consensus 14 ~TpDSFsdgg~~-----~~~~~a~~~a~~~v~--~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSID 86 (280)
T 1eye_A 14 VTDDSFSDGGCY-----LDLDDAVKHGLAMAA--AGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSID 86 (280)
T ss_dssp CSCCTTCSSCCC-----CSHHHHHHHHHHHHH--TTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcCCCccc-----CCHHHHHHHHHHHHH--CCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 344456788652 567889999988887 7999999998554322222223455776543333322 5555432
Q ss_pred ecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC----
Q psy15244 739 LRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK---- 814 (1427)
Q Consensus 739 ~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~---- 814 (1427)
. + .-+.+++|.++|.++|.=....+..+ ..++.+++.|. -+. .+.+. +.|..
T Consensus 87 T----------~----~~~va~aAl~aGa~iINdvsg~~~d~---~m~~~~a~~~~---~vV-lmh~~---G~p~tm~~~ 142 (280)
T 1eye_A 87 T----------M----RADVARAALQNGAQMVNDVSGGRADP---AMGPLLAEADV---PWV-LMHWR---AVSADTPHV 142 (280)
T ss_dssp C----------S----CHHHHHHHHHTTCCEEEETTTTSSCT---THHHHHHHHTC---CEE-EECCC---CSCTTCTTS
T ss_pred C----------C----CHHHHHHHHHcCCCEEEECCCCCCCH---HHHHHHHHhCC---eEE-EEcCC---CCCcchhhc
Confidence 2 2 23347788889999987555554222 34556677777 221 12222 23321
Q ss_pred -CCCC------HHHHHHHHHHHHHCCCC--EEEEccc-cCcC-CHHHHHHHHHHHHHHc-CCceEEEeecC---------
Q psy15244 815 -KKYS------LNYYEDLAKQLVESGAQ--VLCLKDM-AGLL-KPTAAKLLIGSFREKY-PNILIHVHTHD--------- 873 (1427)
Q Consensus 815 -~~~~------~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l-~P~~~~~lv~~lr~~~-p~ipi~~H~Hn--------- 873 (1427)
..|. .+++.+.++.+.++|+. .|.| |. .|.. +..+-.++++.+++-- ++.|+-+=.-|
T Consensus 143 ~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~Iil-DPg~Gf~k~~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfi~~~~~ 221 (280)
T 1eye_A 143 PVRYGNVVAEVRADLLASVADAVAAGVDPARLVL-DPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLA 221 (280)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHTC
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEE-ECCCCcccCHHHHHHHHHHHHHhhcCCCCEEEEecchHHHHhhhc
Confidence 1232 78899999999999987 4444 43 2433 3456677777776431 47776553322
Q ss_pred -----------CcchHHHHHHHHHHhcCCEEEec
Q psy15244 874 -----------MAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 874 -----------d~GlA~An~laAi~AGad~VD~a 896 (1427)
-.+...|.+..|++.||++|.+.
T Consensus 222 ~~~g~~~~~~~R~~~t~a~~~~a~~~Ga~Ivrvh 255 (280)
T 1eye_A 222 GPDGVMRPTDGRDTATAVISALAALHGAWGVRVH 255 (280)
T ss_dssp CSSSCCCCGGGGHHHHHHHHHHHHHTTCSEEEES
T ss_pred cccCCCCCcccchHHHHHHHHHHHHcCCCEEEeC
Confidence 12234556668889999998765
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.94 Score=49.89 Aligned_cols=171 Identities=14% Similarity=0.083 Sum_probs=105.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
-+..++.++|....+ .|...|++++ .+.++.+|+.. +.|+-.+.|- ..-|+.-+.+.. .+
T Consensus 33 ~~~~~~~~~A~a~~~--~Ga~~i~~~~---------------~~~i~~ir~~v-~~Pvig~~k~-d~~~~~~~I~~~-~~ 92 (232)
T 3igs_A 33 DKPEIVAAMALAAEQ--AGAVAVRIEG---------------IDNLRMTRSLV-SVPIIGIIKR-DLDESPVRITPF-LD 92 (232)
T ss_dssp CSHHHHHHHHHHHHH--TTCSEEEEES---------------HHHHHHHHTTC-CSCEEEECBC-CCSSCCCCBSCS-HH
T ss_pred CCcchHHHHHHHHHH--CCCeEEEECC---------------HHHHHHHHHhc-CCCEEEEEee-cCCCcceEeCcc-HH
Confidence 346789999999998 7999888742 35678888775 4553212221 001111111111 22
Q ss_pred HHHHHHhcCCCEEEEeccC-ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 758 FCRLASQAGIDIFRVFDPL-NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~-nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
.++.+.+.|+|.+-+-... .+.+.+...++.+++.|. .+-+. .++. +.++.+.++|+|.
T Consensus 93 ~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~---~v~~~-------------v~t~----eea~~a~~~Gad~ 152 (232)
T 3igs_A 93 DVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHL---LTMAD-------------CSSV----DDGLACQRLGADI 152 (232)
T ss_dssp HHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTC---EEEEE-------------CCSH----HHHHHHHHTTCSE
T ss_pred HHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCC---EEEEe-------------CCCH----HHHHHHHhCCCCE
Confidence 4788999999988654432 123678888899998888 44321 2343 4467788999999
Q ss_pred EEEc--cc-cC--cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEec
Q psy15244 837 LCLK--DM-AG--LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 837 i~i~--Dt-~G--~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~a 896 (1427)
|.+. +. .+ ...| -.++++.+++. ++|+-.= .|.. ..+..+++++||+.|=+.
T Consensus 153 Ig~~~~g~t~~~~~~~~--~~~~i~~l~~~--~ipvIA~----GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 153 IGTTMSGYTTPDTPEEP--DLPLVKALHDA--GCRVIAE----GRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp EECTTTTSSSSSCCSSC--CHHHHHHHHHT--TCCEEEE----SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEEcCccCCCCCCCCCC--CHHHHHHHHhc--CCcEEEE----CCCCCHHHHHHHHHcCCCEEEEe
Confidence 9642 11 01 1122 24667777765 6776543 3543 577888889999988554
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.77 Score=54.04 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHhhcCCccEEecc--CCCc--------hhhh-------hhccc--cChHHHHHHHHHhCCCCceeeee
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMW--GGAV--------SHTC-------LKFLK--ECPWERLAELRELIPNIPFQMIL 739 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~--ggat--------fd~~-------~rfl~--e~p~erl~~lr~~~p~~~~qml~ 739 (1427)
+.+..+++++...+ +|.+.+=.. -+-+ |+.. +..+. +-+|+.++.|.+.....-+..+.
T Consensus 42 sle~A~~li~~Ak~--aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~s 119 (385)
T 1vli_A 42 KLDQAFALIDAAAE--AGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLS 119 (385)
T ss_dssp CHHHHHHHHHHHHH--HTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEEC
T ss_pred cHHHHHHHHHHHHH--hCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEE
Confidence 45778888888877 688776542 1111 2100 00011 34667777777666555544443
Q ss_pred cccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCH
Q psy15244 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSL 819 (1427)
Q Consensus 740 Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~ 819 (1427)
. |-+.. .++...+.|+|.+.|-.. ++.|+. .++++.+.|+ ..|.-|| -.++
T Consensus 120 t----------pfD~~--svd~l~~~~vd~~KIgS~--~~~N~p-LL~~va~~gK------PViLStG--------maTl 170 (385)
T 1vli_A 120 T----------VCDEG--SADLLQSTSPSAFKIASY--EINHLP-LLKYVARLNR------PMIFSTA--------GAEI 170 (385)
T ss_dssp B----------CCSHH--HHHHHHTTCCSCEEECGG--GTTCHH-HHHHHHTTCS------CEEEECT--------TCCH
T ss_pred c----------cCCHH--HHHHHHhcCCCEEEECcc--cccCHH-HHHHHHhcCC------eEEEECC--------CCCH
Confidence 2 22322 366677788998888654 222322 2444555677 2334443 4699
Q ss_pred HHHHHHHHHHHHCCCCEEEEc-cccCcCCHHHHHHH--HHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 820 NYYEDLAKQLVESGAQVLCLK-DMAGLLKPTAAKLL--IGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Gad~i~i~-Dt~G~l~P~~~~~l--v~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+.+...++.+.+.|.+.|.|+ =+.+.=+|.....| |..||+.+|++||++=.|-+ |- .+.++||+.+||++|..=
T Consensus 171 ~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt~-G~-~~~~~AAvAlGA~iIEkH 248 (385)
T 1vli_A 171 SDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSE-HP-TEAPCAAVRLGAKLIEKH 248 (385)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCS-SS-SHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCCC-Cc-hHHHHHHHHcCCCEEEeC
Confidence 999999999999998655553 25555556555555 88999999889999977764 42 777899999999998765
Q ss_pred c
Q psy15244 897 A 897 (1427)
Q Consensus 897 v 897 (1427)
+
T Consensus 249 f 249 (385)
T 1vli_A 249 F 249 (385)
T ss_dssp B
T ss_pred C
Confidence 4
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.54 Score=54.34 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=64.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEecCCCccCcccc----c-cceEEEcCCCCCcccCCCCHHHHHHHHHhcC
Q psy15244 57 MEKILIANR-SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRT----K-VDQAFLVGKGMPPVAAYLNIPEIICIAKNNN 130 (1427)
Q Consensus 57 ~kkVLIagr-Geia~riiraa~elGi~~vav~s~~d~~s~~~~----~-aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~ 130 (1427)
+++|||.|. |.++..+++.+.+.|++++++..+......... + .+....+ ..++.|.+.+.++.++.+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~------~~Dl~d~~~l~~~~~~~~ 83 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIV------YGLINEQEAMEKILKEHE 83 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEE------ECCTTCHHHHHHHHHHTT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEE------EeecCCHHHHHHHHhhCC
Confidence 468999995 999999999999999999888765522110000 0 0111111 124567899999999889
Q ss_pred CCEEEeCCCccc--ccHHHHHHHHHCC-Ccee
Q psy15244 131 VDAIHPGYGFLS--EREDFAKAVIGAG-LEFI 159 (1427)
Q Consensus 131 vDaI~pg~gfls--E~~~~a~~~e~~G-i~fi 159 (1427)
+|.|+-..+... ....+.++|.+.| ++.+
T Consensus 84 ~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~ 115 (346)
T 3i6i_A 84 IDIVVSTVGGESILDQIALVKAMKAVGTIKRF 115 (346)
T ss_dssp CCEEEECCCGGGGGGHHHHHHHHHHHCCCSEE
T ss_pred CCEEEECCchhhHHHHHHHHHHHHHcCCceEE
Confidence 999998766421 1235777888888 6644
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.029 Score=51.18 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=31.1
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.++++++|+.|..|++|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 4689999999999999999999999999998763
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
|---|
Probab=92.68 E-value=0.087 Score=47.80 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=31.5
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.+++|++|+.|..|++|+.|+.
T Consensus 41 ~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3579999999999999999999999999999875
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=92.49 E-value=2.9 Score=44.56 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=100.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC-CCceeeeecccccccccCCCcchHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP-NIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p-~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
.+.++..++++.+.+ .|+..||+.... .+..+.++.+|+..| +..+.. |-. .+.-
T Consensus 19 ~~~~~~~~~~~~~~~--~G~~~iev~~~~----------~~~~~~i~~ir~~~~~~~~ig~--------~~v---~~~~- 74 (205)
T 1wa3_A 19 NSVEEAKEKALAVFE--GGVHLIEITFTV----------PDADTVIKELSFLKEKGAIIGA--------GTV---TSVE- 74 (205)
T ss_dssp SSHHHHHHHHHHHHH--TTCCEEEEETTS----------TTHHHHHHHTHHHHHTTCEEEE--------ESC---CSHH-
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEeCCC----------hhHHHHHHHHHHHCCCCcEEEe--------ccc---CCHH-
Confidence 466888999999988 799999985321 123345777777765 332221 100 1211
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
.++.+.+.|.|.+ +....+ ...++.+++.|. .+-.. .+|... ++.+.++|+|.
T Consensus 75 -~~~~a~~~Gad~i-v~~~~~-----~~~~~~~~~~g~---~vi~g-------------~~t~~e----~~~a~~~Gad~ 127 (205)
T 1wa3_A 75 -QCRKAVESGAEFI-VSPHLD-----EEISQFCKEKGV---FYMPG-------------VMTPTE----LVKAMKLGHTI 127 (205)
T ss_dssp -HHHHHHHHTCSEE-ECSSCC-----HHHHHHHHHHTC---EEECE-------------ECSHHH----HHHHHHTTCCE
T ss_pred -HHHHHHHcCCCEE-EcCCCC-----HHHHHHHHHcCC---cEECC-------------cCCHHH----HHHHHHcCCCE
Confidence 2678889999999 443332 346778888888 33221 133333 45668899998
Q ss_pred EEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 837 i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+.+-.. .+ .-.++++.+++.+|++||..=.--+ ..|..+.+++||+.|-+.
T Consensus 128 vk~~~~----~~-~g~~~~~~l~~~~~~~pvia~GGI~----~~~~~~~~~~Ga~~v~vG 178 (205)
T 1wa3_A 128 LKLFPG----EV-VGPQFVKAMKGPFPNVKFVPTGGVN----LDNVCEWFKAGVLAVGVG 178 (205)
T ss_dssp EEETTH----HH-HHHHHHHHHHTTCTTCEEEEBSSCC----TTTHHHHHHHTCSCEEEC
T ss_pred EEEcCc----cc-cCHHHHHHHHHhCCCCcEEEcCCCC----HHHHHHHHHCCCCEEEEC
Confidence 876321 11 1235677788777788886654333 357788889999987554
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.18 Score=50.66 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=67.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 54 PKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 54 ~~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
..+.++|+|+|.|.++..+++.+++.|+++++++.+++........ +..+..+ +..+.+ +++-+.-.++|+
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-g~~~i~g-------d~~~~~-~l~~a~i~~ad~ 74 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-GVRAVLG-------NAANEE-IMQLAHLECAKW 74 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-TCEEEES-------CTTSHH-HHHHTTGGGCSE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-CCCEEEC-------CCCCHH-HHHhcCcccCCE
Confidence 3567899999999999999999999999999998876643222211 2222222 113333 334344456898
Q ss_pred EEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCC
Q psy15244 134 IHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVP 185 (1427)
Q Consensus 134 I~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVp 185 (1427)
|+...+...+|...+..+... .|....+....|.... +.++++|+.
T Consensus 75 vi~~~~~~~~n~~~~~~a~~~-----~~~~~iiar~~~~~~~-~~l~~~G~d 120 (140)
T 3fwz_A 75 LILTIPNGYEAGEIVASARAK-----NPDIEIIARAHYDDEV-AYITERGAN 120 (140)
T ss_dssp EEECCSCHHHHHHHHHHHHHH-----CSSSEEEEEESSHHHH-HHHHHTTCS
T ss_pred EEEECCChHHHHHHHHHHHHH-----CCCCeEEEEECCHHHH-HHHHHCCCC
Confidence 887766544444333333332 1122223344444333 455667765
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.074 Score=50.68 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=32.2
Q ss_pred CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1392 KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1392 Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.-+..|.||.+|+|.++++++|+.|++||+|++|+
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 46 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI 46 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 44567999999999999999999999999999987
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=92.32 E-value=0.051 Score=49.58 Aligned_cols=34 Identities=29% Similarity=0.565 Sum_probs=31.3
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||+.|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 4679999999999999999999999999998864
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=1.4 Score=50.58 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=67.5
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccccCcCCH--------HHHH---HHHHHHHHHcCCc
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKDMAGLLKP--------TAAK---LLIGSFREKYPNI 865 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P--------~~~~---~lv~~lr~~~p~i 865 (1427)
.+.+-+..|-|=+ -|.++| +.+..++.++++.+.|||+|-|.=- ...| ++.. .+|++|++.+ ++
T Consensus 11 ~iMGIlNvTPDSF-sdgg~~~~~~~a~~~a~~~v~~GAdIIDIGge--STrPGa~~v~~~eE~~Rv~pvI~~l~~~~-~v 86 (314)
T 2vef_A 11 VICGIINVTPDSF-SDGGQFFALEQALQQARKLIAEGASMLDIGGE--STRPGSSYVEIEEEIQRVVPVIKAIRKES-DV 86 (314)
T ss_dssp EEEEEEECCC----------CHHHHHHHHHHHHHHTTCSEEEEECC--C-----CHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_pred eEEEEEeCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--cCCCCCCCCCHHHHHHHHHHHHHHHHhhC-Cc
Confidence 5667777775521 244565 7899999999999999999977521 1224 4444 4556688776 89
Q ss_pred eEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 866 LIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 866 pi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
||.+-+=+ ...+.+|+++|+++|+--..+ ..-+.+-.+++-.
T Consensus 87 piSIDT~~-----~~Va~aAl~aGa~iINDVsg~----~~d~~m~~v~a~~ 128 (314)
T 2vef_A 87 LISIDTWK-----SQVAEAALAAGADLVNDITGL----MGDEKMPHVVAEA 128 (314)
T ss_dssp EEEEECSC-----HHHHHHHHHTTCCEEEETTTT----CSCTTHHHHHHHH
T ss_pred eEEEeCCC-----HHHHHHHHHcCCCEEEECCCC----CCChHHHHHHHHc
Confidence 99996655 456679999999999744322 2346776676544
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=92.14 E-value=5.5 Score=42.92 Aligned_cols=187 Identities=10% Similarity=0.044 Sum_probs=111.4
Q ss_pred EEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeee
Q psy15244 660 LLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMIL 739 (1427)
Q Consensus 660 ~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~ 739 (1427)
+|+-|-...|+ ++ -..++..++|+.+.+ .|...+++.+ .+.++.+++.. +.+++.+.
T Consensus 7 ~~~~~q~~~~~--p~---~~~~~~~~~a~~~~~--~Ga~~i~~~~---------------~~~i~~i~~~~-~~pv~~~~ 63 (223)
T 1y0e_A 7 LIVSCQALPDE--PL---HSSFIMSKMALAAYE--GGAVGIRANT---------------KEDILAIKETV-DLPVIGIV 63 (223)
T ss_dssp EEEECCCCTTS--TT---CCHHHHHHHHHHHHH--HTCSEEEEES---------------HHHHHHHHHHC-CSCEEEEC
T ss_pred eEEEecCCCCC--CC---CCCccHHHHHHHHHH--CCCeeeccCC---------------HHHHHHHHHhc-CCCEEeee
Confidence 55666555443 22 133678889998888 6998887632 24577787765 56664433
Q ss_pred cccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC-hH-HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCC
Q psy15244 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN-SV-PNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 740 Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n-d~-~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
+-. .-+..-+..+ -...++.+.+.|.|.+.+-.... +. ..+.+.++.+++. |. .+-. .
T Consensus 64 ~~~-~~~~~~~i~~-~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~---~v~~----~--------- 125 (223)
T 1y0e_A 64 KRD-YDHSDVFITA-TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNV---EIMA----D--------- 125 (223)
T ss_dssp BCC-CTTCCCCBSC-SHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTS---EEEE----E---------
T ss_pred ccC-CCccccccCC-cHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCc---eEEe----c---------
Confidence 311 0011111011 12347888899999987765431 11 2456778888887 76 4321 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccc------cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcch-HHHHHHHHHHh
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDM------AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGT-GVATTLACVKA 888 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt------~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~Gl-A~An~laAi~A 888 (1427)
.++++. ++.+.++|+|.|.+.-. .+......-.++++.+++.+ ++||.. +-|. ...++..++++
T Consensus 126 ~~t~~e----~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia----~GGI~~~~~~~~~~~~ 196 (223)
T 1y0e_A 126 IATVEE----AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIA----EGNVITPDMYKRVMDL 196 (223)
T ss_dssp CSSHHH----HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEE----ESSCCSHHHHHHHHHT
T ss_pred CCCHHH----HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEE----ecCCCCHHHHHHHHHc
Confidence 244443 44578899998875311 11110222356788888887 788765 3466 57888889999
Q ss_pred cCCEEEec
Q psy15244 889 GADIVDVA 896 (1427)
Q Consensus 889 Gad~VD~a 896 (1427)
||+.|=+.
T Consensus 197 Gad~v~vG 204 (223)
T 1y0e_A 197 GVHCSVVG 204 (223)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEC
Confidence 99988554
|
| >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.063 Score=55.39 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=34.3
Q ss_pred EEecCCCEEecCCEEEEEEc--CC-----ceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1371 VKVKVGQQVKKNDVLIVMSV--MK-----TETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1371 v~V~~Gd~V~~G~~l~~iea--mK-----me~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
++|++||+|++||+|+.+.- .| +.+.+.-.- ..+..+....+..|..|+.|+.++
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGGKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSSCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCcceEEEccCceEcCCCEEEEeC
Confidence 59999999999999998862 11 222221111 112223334567788899988763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.15 Score=51.02 Aligned_cols=91 Identities=9% Similarity=0.012 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
++++|+|+|.|.++..+++.+.+.|+++++++.+++........ ...+..+ +..+.+.+.+ +.-.++|+|+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-~~~~~~g-------d~~~~~~l~~-~~~~~~d~vi 75 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-GFDAVIA-------DPTDESFYRS-LDLEGVSAVL 75 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-TCEEEEC-------CTTCHHHHHH-SCCTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-CCcEEEC-------CCCCHHHHHh-CCcccCCEEE
Confidence 36789999999999999999999999999998765532211111 1112222 1233333332 3334689988
Q ss_pred eCCCcccccHHHHHHHHHCC
Q psy15244 136 PGYGFLSEREDFAKAVIGAG 155 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~G 155 (1427)
...+....|...+..+.+.|
T Consensus 76 ~~~~~~~~n~~~~~~a~~~~ 95 (141)
T 3llv_A 76 ITGSDDEFNLKILKALRSVS 95 (141)
T ss_dssp ECCSCHHHHHHHHHHHHHHC
T ss_pred EecCCHHHHHHHHHHHHHhC
Confidence 77764444444455555544
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=91.95 E-value=4.7 Score=45.35 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=115.0
Q ss_pred EeecC---cccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCc
Q psy15244 661 LTDTT---FRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIP 734 (1427)
Q Consensus 661 i~DtT---lRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~ 734 (1427)
++++| |.||.+. .+.++.++.|..+.+ .|.+.|.+++++. .++.++|+..+-+.+ -+++
T Consensus 16 ilN~Tpdsf~dg~~~-----~~~~~a~~~a~~~v~--~GAdiIDIg~~s~--------~~eE~~rv~~vi~~l~~~~~~p 80 (271)
T 2yci_X 16 RINGMFKDIREAILN-----KDPRPIQEWARRQAE--KGAHYLDVNTGPT--------ADDPVRVMEWLVKTIQEVVDLP 80 (271)
T ss_dssp EEETTSHHHHHHHHT-----TCCHHHHHHHHHHHH--TTCSEEEEECCSC--------SSCHHHHHHHHHHHHHHHCCCC
T ss_pred ecCCChhhHHHhhhh-----CCHHHHHHHHHHHHH--CCCCEEEEcCCcC--------chhHHHHHHHHHHHHHHhCCCe
Confidence 66676 3455442 455888899988887 7999999998763 456788875433322 2555
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhc--CCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQA--GIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP 812 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p 812 (1427)
++.=. + .-+.+++|+++ |.+++.=....+ +++...++.+++.|. -+ +.+.- ++
T Consensus 81 isIDT----------~----~~~v~~aal~a~~Ga~iINdvs~~~--d~~~~~~~~~a~~~~---~v---v~m~~---d~ 135 (271)
T 2yci_X 81 CCLDS----------T----NPDAIEAGLKVHRGHAMINSTSADQ--WKMDIFFPMAKKYEA---AI---IGLTM---NE 135 (271)
T ss_dssp EEEEC----------S----CHHHHHHHHHHCCSCCEEEEECSCH--HHHHHHHHHHHHHTC---EE---EEESC---BT
T ss_pred EEEeC----------C----CHHHHHHHHHhCCCCCEEEECCCCc--cccHHHHHHHHHcCC---CE---EEEec---CC
Confidence 55422 1 23346677777 999987444432 556677778888887 22 22221 11
Q ss_pred CCCCCC----HHHHHHHHHHHHHCCCCE--EEEccccCc--CCHHHHHHHHHHHHH---Hc-CCceEEEeecCC-cch--
Q psy15244 813 NKKKYS----LNYYEDLAKQLVESGAQV--LCLKDMAGL--LKPTAAKLLIGSFRE---KY-PNILIHVHTHDM-AGT-- 877 (1427)
Q Consensus 813 ~~~~~~----~~~~~~~a~~l~~~Gad~--i~i~Dt~G~--l~P~~~~~lv~~lr~---~~-p~ipi~~H~Hnd-~Gl-- 877 (1427)
.....+ .+++.+.++.+.++|+.. |.|==..|- -+.....++++.++. .. |+.|+-+=.+|- +|+
T Consensus 136 ~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G~Snksfg~~~ 215 (271)
T 2yci_X 136 KGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLGLSNVSQKCPD 215 (271)
T ss_dssp TBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEEGGGGGTTCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEeeCccccCCch
Confidence 111234 778888888999999873 544222232 134566667766664 34 568877755553 232
Q ss_pred ----HHHHHHHHHHhcCCEE
Q psy15244 878 ----GVATTLACVKAGADIV 893 (1427)
Q Consensus 878 ----A~An~laAi~AGad~V 893 (1427)
..+.+..|+.+|++.+
T Consensus 216 r~~l~~t~~~~a~~~g~~~~ 235 (271)
T 2yci_X 216 RPLINRTYLVMAMTAGLDAA 235 (271)
T ss_dssp HHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCcE
Confidence 2223345666776643
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.86 E-value=1.1 Score=49.14 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=105.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
-+..++.++|....+ .|...|++++ .+.++.+|+.+ +.|+-.+.|- ..-++.-+.... .+
T Consensus 33 ~~~~~~~~~A~a~~~--~Ga~~i~~~~---------------~~~i~~ir~~v-~~Pvig~~k~-~~~~~~~~I~~~-~~ 92 (229)
T 3q58_A 33 DKPEIVAAMAQAAAS--AGAVAVRIEG---------------IENLRTVRPHL-SVPIIGIIKR-DLTGSPVRITPY-LQ 92 (229)
T ss_dssp CSHHHHHHHHHHHHH--TTCSEEEEES---------------HHHHHHHGGGC-CSCEEEECBC-CCSSCCCCBSCS-HH
T ss_pred CCcchHHHHHHHHHH--CCCcEEEECC---------------HHHHHHHHHhc-CCCEEEEEee-cCCCCceEeCcc-HH
Confidence 356789999999998 7999998742 35678888876 4553222221 001111111111 23
Q ss_pred HHHHHHhcCCCEEEEeccC-ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 758 FCRLASQAGIDIFRVFDPL-NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~-nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
.++.+.+.|+|.+-+-... .+.+.+...++.+++.|. .+-+. .++. +.++.+.++|+|.
T Consensus 93 ~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~---~v~~~-------------v~t~----eea~~a~~~Gad~ 152 (229)
T 3q58_A 93 DVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGL---LAMAD-------------CSTV----NEGISCHQKGIEF 152 (229)
T ss_dssp HHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTC---EEEEE-------------CSSH----HHHHHHHHTTCSE
T ss_pred HHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCC---EEEEe-------------cCCH----HHHHHHHhCCCCE
Confidence 4788999999988554332 123678888899998888 44321 2443 4467788999999
Q ss_pred EEEc--c-ccC--cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEec
Q psy15244 837 LCLK--D-MAG--LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 837 i~i~--D-t~G--~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~a 896 (1427)
|.+. + |.+ ...| -.++++.+++. ++|+-.= .|.. ..++.+++++||+.|=+.
T Consensus 153 Ig~~~~g~t~~~~~~~~--~~~li~~l~~~--~ipvIA~----GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 153 IGTTLSGYTGPITPVEP--DLAMVTQLSHA--GCRVIAE----GRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp EECTTTTSSSSCCCSSC--CHHHHHHHHTT--TCCEEEE----SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEecCccCCCCCcCCCC--CHHHHHHHHHc--CCCEEEE----CCCCCHHHHHHHHHcCCCEEEEc
Confidence 9642 1 111 1222 23677777764 6776543 3442 577788889999988554
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.13 Score=59.79 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=41.9
Q ss_pred EEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|....|+.|+.-..=..-..+++. -+..|.++.+|+|.+++|++||.|++||+|++|+
T Consensus 6 v~~~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld 63 (341)
T 3fpp_A 6 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID 63 (341)
T ss_dssp -------CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEEEEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 444556666654444455667766 4778999999999999999999999999999986
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=91.78 E-value=12 Score=42.18 Aligned_cols=182 Identities=9% Similarity=0.096 Sum_probs=109.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--CCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN--YSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~--~~~nvv 755 (1427)
.+.+|+.++++...+ -|+.++-+..+ .++..++.+.++.+.. ...+||-. .+..+.
T Consensus 71 ~T~~dI~~lc~eA~~--~g~aaVCV~P~----------------~V~~a~~~L~~s~V~V----~tVigFP~G~~~~~~K 128 (288)
T 3oa3_A 71 ATGSQIDVLCAEAKE--YGFATVCVRPD----------------YVSRAVQYLQGTQVGV----TCVIGFHEGTYSTDQK 128 (288)
T ss_dssp CCHHHHHHHHHHHHH--HTCSEEEECGG----------------GHHHHHHHTTTSSCEE----EEEESTTTSCSCHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCcEEEECHH----------------HHHHHHHHcCCCCCeE----EEEeCCCCCCCcHHHH
Confidence 567888888887776 48888876521 2344555555443221 11356522 344555
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
-.-++.|++.|.|.|-+...... .+.+..-|..++++ +. ..+- .|--++ ..+.+.+...++.+
T Consensus 129 v~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~--~~lK-VIlEt~--------~Lt~eei~~A~~ia 197 (288)
T 3oa3_A 129 VSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKD--AILK-VILETS--------QLTADEIIAGCVLS 197 (288)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTT--SEEE-EECCGG--------GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcC--CCce-EEEECC--------CCCHHHHHHHHHHH
Confidence 55688899999999998776643 34555555555554 33 1222 222221 35778888999999
Q ss_pred HHCCCCEEEEcc--ccCcCCHHHHHHHHHHHHHHc-CCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 830 VESGAQVLCLKD--MAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 830 ~~~Gad~i~i~D--t~G~l~P~~~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.++|||.|--.- +.|-.++.++.- ++.+.+.. +.++|-.=.--. ....+++-++|||+.|=+|
T Consensus 198 ~eaGADfVKTSTGf~~~GAT~edv~l-mr~~v~~~g~~v~VKAAGGIr---t~edAl~mi~aGA~RiGtS 263 (288)
T 3oa3_A 198 SLAGADYVKTSTGFNGPGASIENVSL-MSAVCDSLQSETRVKASGGIR---TIEDCVKMVRAGAERLGAS 263 (288)
T ss_dssp HHTTCSEEECCCSSSSCCCCHHHHHH-HHHHHHHSSSCCEEEEESSCC---SHHHHHHHHHTTCSEEEES
T ss_pred HHcCCCEEEcCCCCCCCCCCHHHHHH-HHHHHHHhCCCceEEEeCCCC---CHHHHHHHHHcCCceeehh
Confidence 999999876551 123567777654 44444332 345553322100 1377889999999998555
|
| >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
|---|
Probab=91.68 E-value=0.095 Score=54.50 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=33.5
Q ss_pred EecCCCEEecCCEEEEEEc--CC-----ceeeeecCCCeEEEEEEecCCCeeCCCC-EEEEEe
Q psy15244 1372 KVKVGQQVKKNDVLIVMSV--MK-----TETLIHASADGVVKEIFVEVGGQVAQND-LVVVLD 1426 (1427)
Q Consensus 1372 ~V~~Gd~V~~G~~l~~iea--mK-----me~~i~Ap~~G~V~~i~v~~G~~V~~g~-~L~~i~ 1426 (1427)
+|++||+|++||+|+.+.- .| +.+.+.-.-......+....+..|.+|+ +|+.+.
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn~~~~~~~~~~~~~~v~~g~~~i~~~~ 161 (162)
T 1ax3_A 99 FVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNREQEDIVKIE 161 (162)
T ss_dssp SCCCCSEECSEEEEEEECHHHHGGGSSCCCEEEEESSGGGTCEEEECCCSEECTTCSSSEEEE
T ss_pred EEeCCCEEcCCCEEEEECHHHHHhcCCCCEEEEEEECCcccceEEeccCceEecCCEEEEEEe
Confidence 8999999999999998852 22 3333332222222334455556677777 556553
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=91.60 E-value=2.3 Score=49.96 Aligned_cols=113 Identities=27% Similarity=0.291 Sum_probs=74.7
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
+..|.+-|+.++.. --+.+.+...++.+|+.+. ..+.+.+. + .+ .+.+.++.+.++|+|.|.
T Consensus 64 ~avA~aGGlg~i~~---~~s~e~~~~~i~~vk~~~~--l~vga~vg-~----~~--------~~~~~~~~lieaGvd~I~ 125 (366)
T 4fo4_A 64 IALAQEGGIGFIHK---NMSIEQQAAQVHQVKISGG--LRVGAAVG-A----AP--------GNEERVKALVEAGVDVLL 125 (366)
T ss_dssp HHHHHTTCEEEECS---SSCHHHHHHHHHHHHTTTS--CCCEEECC-S----CT--------TCHHHHHHHHHTTCSEEE
T ss_pred HHHHHcCCceEeec---CCCHHHHHHHHHHHHhcCc--eeEEEEec-c----Ch--------hHHHHHHHHHhCCCCEEE
Confidence 34444566666543 2356777778888887653 12222211 1 11 245678899999999887
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
| ||++. .|....+.|+.+|+.+|+++|....= .....+.+++++|||.|.+
T Consensus 126 i-dta~G-~~~~~~~~I~~ik~~~p~v~Vi~G~v----~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 126 I-DSSHG-HSEGVLQRIRETRAAYPHLEIIGGNV----ATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp E-ECSCT-TSHHHHHHHHHHHHHCTTCEEEEEEE----CSHHHHHHHHHHTCSEEEE
T ss_pred E-eCCCC-CCHHHHHHHHHHHHhcCCCceEeeee----CCHHHHHHHHHcCCCEEEE
Confidence 6 55543 45677788999999999999866421 2345668899999999998
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=91.33 E-value=1.1 Score=52.68 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=86.6
Q ss_pred ccceeEeecccccccchhhhhccccc-----------------cccccccccccc--ccccccc-CCCeEEeecCcccCC
Q psy15244 611 KLKHVLLTDTTFRDAHQSLLATRVRT-----------------YDLKKVMMGAGE--FVNSVRK-LKHILLTDTTFRDAH 670 (1427)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~dl~~~~~~~~~--~~~~~~~-~~~v~i~DtTlRDG~ 670 (1427)
..+.+.|.|||.||+.|+.-. ..++ ++...+..+|.. +++.+.+ .++..|
T Consensus 9 ~~~~v~I~DtTLRDG~Q~~~~-~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~~~d~e~v~~i~~~~~~~~i--------- 78 (370)
T 3rmj_A 9 QTNRVIIFDTTLRDGEQSPGA-AMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAKTITKSTV--------- 78 (370)
T ss_dssp -CCBCEEEECCCCCCTTSTTC-CCCHHHHHHHHHHHHHHTCSEEEEEEGGGCHHHHHHHHHHHTTCSSSEE---------
T ss_pred CCCCEEEEECCCCccccCCCC-CcCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCeE---------
Confidence 356799999999999998754 2333 333333333321 1211221 111222
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhh-hhccccChHHHHHHHHH---hCCCCceeeeeccccccc
Q psy15244 671 QSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTC-LKFLKECPWERLAELRE---LIPNIPFQMILRGNSLVG 746 (1427)
Q Consensus 671 Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~-~rfl~e~p~erl~~lr~---~~p~~~~qml~Rg~n~vg 746 (1427)
| .| .|.+.+|..+.++.+.. +|+..|-+..++ .|.- ..-++-+.-+-++.+++ .....-...-+-+ --+
T Consensus 79 ~-~l-~r~~~~di~~a~~al~~--ag~~~v~if~~~-Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~ 151 (370)
T 3rmj_A 79 C-SL-SRAIERDIRQAGEAVAP--APKKRIHTFIAT-SPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSC--EDA 151 (370)
T ss_dssp E-EE-EESSHHHHHHHHHHHTT--SSSEEEEEEEEC-SHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEE--ETG
T ss_pred E-EE-ecCCHHHHHHHHHHHhh--CCCCEEEEEecC-cHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEec--CCC
Confidence 2 22 35567777777777766 788887765433 2221 11234444444444333 2222111110100 012
Q ss_pred ccCCCcchHHHHHHHHHhcCCCEEEEeccCC--hHHHHHHHHHHHHHh
Q psy15244 747 YSNYSPAEVGAFCRLASQAGIDIFRVFDPLN--SVPNLVKGMDAVQQV 792 (1427)
Q Consensus 747 y~~~~~nvv~~~v~~a~~~Gid~~rif~~~n--d~~~~~~~i~~a~~~ 792 (1427)
+ ..+.+.+.+.++.+.+.|+++|++.|.+- ....+...++.+++.
T Consensus 152 ~-r~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~ 198 (370)
T 3rmj_A 152 L-RSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAK 198 (370)
T ss_dssp G-GSCHHHHHHHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHH
T ss_pred C-ccCHHHHHHHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHh
Confidence 2 23445566788888899999999999876 345666667766654
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.08 E-value=6.1 Score=45.27 Aligned_cols=184 Identities=15% Similarity=0.120 Sum_probs=106.5
Q ss_pred EEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-cc--CcC-------CHHH---HHHHHHHHHHHcCC
Q psy15244 798 IVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKD-MA--GLL-------KPTA---AKLLIGSFREKYPN 864 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~D-t~--G~l-------~P~~---~~~lv~~lr~~~p~ 864 (1427)
.+.+-|..|.|=++ | ...+.+..++.++++.+.|||+|-|.= +. |.- ..++ +...|++|++.+ +
T Consensus 29 ~vMGIlNvTpDSFs-d-~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~ 105 (314)
T 3tr9_A 29 AVMGIINVSPNSFY-H-PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-P 105 (314)
T ss_dssp EEEEEEECSTTCSB-C-BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-C
T ss_pred EEEEEEeCCCCchh-h-ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-C
Confidence 56677777765222 2 346899999999999999999998873 11 111 1233 445677777776 8
Q ss_pred ceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh-------CCCCCCCC--------hhh
Q psy15244 865 ILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN-------TDKRCGID--------LHD 929 (1427)
Q Consensus 865 ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~-------~g~~tgid--------l~~ 929 (1427)
+||.+-+=+ ...+.+|+++|+++|+-- +|.. .+.+-.+++.... .|...... .+.
T Consensus 106 vpISIDT~~-----~~Va~aAl~aGa~iINDV-sg~~----~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev 175 (314)
T 3tr9_A 106 QLISVDTSR-----PRVMREAVNTGADMINDQ-RALQ----LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSV 175 (314)
T ss_dssp SEEEEECSC-----HHHHHHHHHHTCCEEEET-TTTC----STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHH
T ss_pred CeEEEeCCC-----HHHHHHHHHcCCCEEEEC-CCCC----chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHH
Confidence 999997655 456689999999999753 3332 3555555554431 12111111 023
Q ss_pred HHHHHHHHHHHhCCCCCCCC----cccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecC
Q psy15244 930 VCDYSSYWRKVRELYAPAHN----LLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEI 995 (1427)
Q Consensus 930 L~~l~~~v~~~~g~~~~~~k----pivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~ 995 (1427)
+..+.+.++.....-+++.+ |.+|...|.... .+.-.+.+.-..+..+.+|-+.|.++.-+++++
T Consensus 176 ~~~l~~~i~~a~~~GI~~~~IilDPG~G~~~F~Kt~-~~n~~lL~~l~~l~~lg~PvL~G~SRKsfig~~ 244 (314)
T 3tr9_A 176 KKELQESIQRCKKAGISEDRIIIDPGFGQGNYGKNV-SENFYLLNKLPEFVAMGLPVLSGWSRKSMIGDV 244 (314)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEECCCCSGGGCCCH-HHHHHHHHTTHHHHTTSSCBEECCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHhHEEEeCCCCchhhcCCH-HHHHHHHHHHHHHhcCCCCEEEEechhhhhhhh
Confidence 44455566666555555555 445544465443 333333333333444565666776655554443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.89 Score=46.28 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=33.2
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCc
Q psy15244 52 PPPKTMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDK 92 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~ 92 (1427)
|.....++|+|+|.|.++..+++.+++.|+++++++.+++.
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~ 54 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA 54 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 33445679999999999999999999999998888766554
|
| >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
|---|
Probab=90.94 E-value=0.18 Score=52.37 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=44.4
Q ss_pred CceecCCCeEEEEE-----------------------------------EecCCCEEecCCEEEEEEc--CC-----cee
Q psy15244 1358 GEIGAPMPGNIIEV-----------------------------------KVKVGQQVKKNDVLIVMSV--MK-----TET 1395 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v-----------------------------------~V~~Gd~V~~G~~l~~iea--mK-----me~ 1395 (1427)
+.|.||..|+|..+ +|++||+|++||+|+.+.- .| +.+
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 129 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLT 129 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECHHHHHhcCCCCeE
Confidence 68899999999877 8999999999999998862 21 344
Q ss_pred eeecCCCeEEEEEEecCCCeeCCC-CEEEEEe
Q psy15244 1396 LIHASADGVVKEIFVEVGGQVAQN-DLVVVLD 1426 (1427)
Q Consensus 1396 ~i~Ap~~G~V~~i~v~~G~~V~~g-~~L~~i~ 1426 (1427)
.|.-.-...+..+....| .|.+| +.|+.+.
T Consensus 130 ~vvvtn~~~~~~~~~~~~-~v~~~~~~~~~~~ 160 (161)
T 1f3z_A 130 PVVISNMDEIKELIKLSG-SVTVGETPVIRIK 160 (161)
T ss_dssp EEEESCGGGCSEEEECCS-EECTTTSEEEEEE
T ss_pred EEEEECCcccceEEeccc-eEeeCCcEEEEEE
Confidence 443322222333323334 56555 4777764
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=3.9 Score=45.61 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=104.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC--CceeeeecccccccccC--CCcc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN--IPFQMILRGNSLVGYSN--YSPA 753 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~--~~~qml~Rg~n~vgy~~--~~~n 753 (1427)
.+.+|+.+++....+ -|+.++-+..+. ++..++.+.+ +++.. .+||.. .+..
T Consensus 56 ~t~~~I~~lc~eA~~--~~~aaVCV~p~~----------------V~~a~~~L~gs~v~v~t------VigFP~G~~~~~ 111 (260)
T 3r12_A 56 ATPDDIKKLCLEARE--NRFHGVCVNPCY----------------VKLAREELEGTDVKVVT------VVGFPLGANETR 111 (260)
T ss_dssp CCHHHHHHHHHHHHH--TTCSEEEECGGG----------------HHHHHHHHTTSCCEEEE------EESTTTCCSCHH
T ss_pred CCHHHHHHHHHHHHh--cCCcEEEECHHH----------------HHHHHHHhcCCCCeEEE------EecCCCCCCcHH
Confidence 567888888888777 688888775321 2222333333 33333 334432 3345
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~ 827 (1427)
+.-.-++.|++.|.|.+-+......+ +.+..-+..++++ +. ..+ -.|--++ ..+.+.....++
T Consensus 112 ~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~--~~l-KVIlEt~--------~Lt~eei~~A~~ 180 (260)
T 3r12_A 112 TKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKG--KVV-KVIIETC--------YLDTEEKIAACV 180 (260)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTT--SEE-EEECCGG--------GCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCC--CcE-EEEEeCC--------CCCHHHHHHHHH
Confidence 45555888999999999988776543 4444444444444 22 133 2333332 457889999999
Q ss_pred HHHHCCCCEEEEccccC----cCCHHHHHHHHHHHHHHcCCceEEEee--cCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 828 QLVESGAQVLCLKDMAG----LLKPTAAKLLIGSFREKYPNILIHVHT--HDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 828 ~l~~~Gad~i~i~Dt~G----~l~P~~~~~lv~~lr~~~p~ipi~~H~--Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+.++|||.|--. .| ..+++++..+-+.+. +.++|=.=. + | ...+++-++|||+.+=+|
T Consensus 181 ia~eaGADfVKTS--TGf~~~GAT~edV~lm~~~vg---~~v~VKaAGGIr-t----~~~al~mi~aGA~RiGtS 245 (260)
T 3r12_A 181 ISKLAGAHFVKTS--TGFGTGGATAEDVHLMKWIVG---DEMGVKASGGIR-T----FEDAVKMIMYGADRIGTS 245 (260)
T ss_dssp HHHHTTCSEEECC--CSSSSCCCCHHHHHHHHHHHC---TTSEEEEESSCC-S----HHHHHHHHHTTCSEEEES
T ss_pred HHHHhCcCEEEcC--CCCCCCCCCHHHHHHHHHHhC---CCceEEEeCCCC-C----HHHHHHHHHcCCceeecc
Confidence 9999999987654 44 456666555433332 234442211 1 1 266777799999998655
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=90.77 E-value=0.64 Score=51.10 Aligned_cols=139 Identities=18% Similarity=0.251 Sum_probs=87.9
Q ss_pred HHHHHHHHhC-CCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEE
Q psy15244 721 ERLAELRELI-PNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 721 erl~~lr~~~-p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v 799 (1427)
+-++.||+.. ++.++-..+-- +.|+ .+++.++++|+|.+.+-.-.. +.+.+.++.+++.|. .+
T Consensus 52 ~~v~~ir~~~~~~~~~dvhLmv-------~~p~----~~i~~~~~aGad~itvH~Ea~--~~~~~~i~~i~~~G~---k~ 115 (228)
T 3ovp_A 52 PVVESLRKQLGQDPFFDMHMMV-------SKPE----QWVKPMAVAGANQYTFHLEAT--ENPGALIKDIRENGM---KV 115 (228)
T ss_dssp HHHHHHHHHHCSSSCEEEEEEC-------SCGG----GGHHHHHHHTCSEEEEEGGGC--SCHHHHHHHHHHTTC---EE
T ss_pred HHHHHHHHhhCCCCcEEEEEEe-------CCHH----HHHHHHHHcCCCEEEEccCCc--hhHHHHHHHHHHcCC---CE
Confidence 4678888885 77776654421 1233 357788889999998865433 257788889999998 65
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE----ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCc
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL----KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMA 875 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i----~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~ 875 (1427)
..++ +|. ++.+.+.++. + .+|.|.+ .-..|...-....+.++.+|+..++++|.+= -
T Consensus 116 gval-------~p~---t~~e~l~~~l----~-~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~Vd----G 176 (228)
T 3ovp_A 116 GLAI-------KPG---TSVEYLAPWA----N-QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVD----G 176 (228)
T ss_dssp EEEE-------CTT---SCGGGTGGGG----G-GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEE----S
T ss_pred EEEE-------cCC---CCHHHHHHHh----c-cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEe----C
Confidence 4443 342 3333332222 2 2676543 2222322222345568889988877888764 4
Q ss_pred chHHHHHHHHHHhcCCEEE
Q psy15244 876 GTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD 894 (1427)
|....|.-.+++||||++=
T Consensus 177 GI~~~t~~~~~~aGAd~~V 195 (228)
T 3ovp_A 177 GVGPDTVHKCAEAGANMIV 195 (228)
T ss_dssp SCSTTTHHHHHHHTCCEEE
T ss_pred CcCHHHHHHHHHcCCCEEE
Confidence 6666888999999999873
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=90.72 E-value=2.3 Score=46.48 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhhcCCccEEecc--CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMW--GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~--ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
.+..+.++.+.+ .|++.+++. .|..+. -+... .+.++.|++.. +.++...+-- +-| ..+
T Consensus 19 ~~l~~~i~~~~~--~Gad~i~l~i~Dg~fv~----~~~~~-~~~~~~lr~~~-~~~~~v~lmv-------~d~----~~~ 79 (228)
T 1h1y_A 19 ANLAAEADRMVR--LGADWLHMDIMDGHFVP----NLTIG-APVIQSLRKHT-KAYLDCHLMV-------TNP----SDY 79 (228)
T ss_dssp GGHHHHHHHHHH--TTCSEEEEEEEBSSSSS----CBCBC-HHHHHHHHTTC-CSEEEEEEES-------SCG----GGG
T ss_pred HHHHHHHHHHHH--cCCCEEEEEEecCCcCc----chhhC-HHHHHHHHhhc-CCcEEEEEEe-------cCH----HHH
Confidence 345555666666 688887764 111100 11222 36778888766 4444432211 112 346
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC--CCCE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES--GAQV 836 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~--Gad~ 836 (1427)
++.+.++|+|.+.+-.-.++ +.+...++.+++.|. .+-..+ +|. .+.+ ..+.+.+. ++|.
T Consensus 80 i~~~~~agad~v~vH~~~~~-~~~~~~~~~i~~~g~---~igv~~-------~p~---t~~e----~~~~~~~~~~~~d~ 141 (228)
T 1h1y_A 80 VEPLAKAGASGFTFHIEVSR-DNWQELIQSIKAKGM---RPGVSL-------RPG---TPVE----EVFPLVEAENPVEL 141 (228)
T ss_dssp HHHHHHHTCSEEEEEGGGCT-TTHHHHHHHHHHTTC---EEEEEE-------CTT---SCGG----GGHHHHHSSSCCSE
T ss_pred HHHHHHcCCCEEEECCCCcc-cHHHHHHHHHHHcCC---CEEEEE-------eCC---CCHH----HHHHHHhcCCCCCE
Confidence 88888899999977776554 223667778888888 554322 231 2222 23455565 8998
Q ss_pred EEEcccc-----CcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 837 LCLKDMA-----GLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 837 i~i~Dt~-----G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
|.+ ++. |.-.+....+.++.+|+..+++||.+ +.|....|.-.++++|||.+=+
T Consensus 142 vl~-~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v----~GGI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 142 VLV-MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEV----DGGLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp EEE-ESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEE----ESSCSTTTHHHHHHHTCCEEEE
T ss_pred EEE-EeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 877 222 33334556677888888876788765 3466667888889999998744
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=11 Score=44.60 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=86.4
Q ss_pred HHHHHHhcCCCEEEEec--------------cCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC-------C
Q psy15244 758 FCRLASQAGIDIFRVFD--------------PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK-------K 816 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~--------------~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~-------~ 816 (1427)
.++..+++|+..|||-. ..++++.+..+++.|+++|+ .+-.-+.|+..+.+|... .
T Consensus 53 ~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GL---kVlldfHysD~WadPg~Q~~P~aW~~ 129 (399)
T 1ur4_A 53 IFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGM---KLLADFHYSDFWADPAKQKAPKAWAN 129 (399)
T ss_dssp HHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTC---EEEEEECSSSSCCSSSCCCCCGGGTT
T ss_pred HHHHHHHCCCCEEEEeeecCCcccccCccCCCCCCHHHHHHHHHHHHHCCC---EEEEEeccCCccCCcccccCcccccc
Confidence 46677789999999731 12678899999999999999 777777776544566310 1
Q ss_pred CC--------HHHHHHHHHHHHHCCCC--EEEEcc-----ccCcCCHHHHHH----HHHHHHHHcCCceEEEeecCCcch
Q psy15244 817 YS--------LNYYEDLAKQLVESGAQ--VLCLKD-----MAGLLKPTAAKL----LIGSFREKYPNILIHVHTHDMAGT 877 (1427)
Q Consensus 817 ~~--------~~~~~~~a~~l~~~Gad--~i~i~D-----t~G~l~P~~~~~----lv~~lr~~~p~ipi~~H~Hnd~Gl 877 (1427)
.+ .+|-.++++.+.+.|+. .+.+-- +.|......... .++++|+..|+.+|-+|..+-...
T Consensus 130 ~~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~~ 209 (399)
T 1ur4_A 130 LNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETS 209 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcch
Confidence 23 23556677778788865 443332 222222444333 357888888999988887654333
Q ss_pred HH----HHHHHHHHhcCCEEEeccccC
Q psy15244 878 GV----ATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 878 A~----An~laAi~AGad~VD~av~Gm 900 (1427)
+. .+.+.+...=.|+|-++..++
T Consensus 210 ~~~~~~~d~l~~~g~d~DvIG~syYp~ 236 (399)
T 1ur4_A 210 GRYAWIAETLHRHHVDYDVFASSYYPF 236 (399)
T ss_dssp THHHHHHHHHHHTTCCCSEEEEEECTT
T ss_pred HHHHHHHHHHHHcCCCcCeEeEecCcc
Confidence 22 222222222266777777665
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=1.1 Score=48.67 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=100.9
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++-+++++.+. .|++.+|++..- ++... .+-++.+|+..++.++-..+. + -..| ..
T Consensus 16 ~~~~~~~~~~~~~~---~~vd~ie~g~~~-------~~~~G-~~~i~~lr~~~~~~~i~ld~~---l---~d~p----~~ 74 (218)
T 3jr2_A 16 TNLTDAVAVASNVA---SYVDVIEVGTIL-------AFAEG-MKAVSTLRHNHPNHILVCDMK---T---TDGG----AI 74 (218)
T ss_dssp SSHHHHHHHHHHHG---GGCSEEEECHHH-------HHHHT-THHHHHHHHHCTTSEEEEEEE---E---CSCH----HH
T ss_pred CCHHHHHHHHHHhc---CCceEEEeCcHH-------HHhcC-HHHHHHHHHhCCCCcEEEEEe---e---cccH----HH
Confidence 45677788888874 489999986211 11112 356788998887766443221 0 0111 23
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+++.++++|+|.+-+-+... .+.++.+++.+++.|. .... |+..| .|.+. ++.+.+.|+|.+
T Consensus 75 ~~~~~~~aGad~i~vh~~~~-~~~~~~~~~~~~~~g~---~~~~------d~l~~----~T~~~----~~~~~~~g~d~v 136 (218)
T 3jr2_A 75 LSRMAFEAGADWITVSAAAH-IATIAACKKVADELNG---EIQI------EIYGN----WTMQD----AKAWVDLGITQA 136 (218)
T ss_dssp HHHHHHHHTCSEEEEETTSC-HHHHHHHHHHHHHHTC---EEEE------ECCSS----CCHHH----HHHHHHTTCCEE
T ss_pred HHHHHHhcCCCEEEEecCCC-HHHHHHHHHHHHHhCC---ccce------eeeec----CCHHH----HHHHHHcCccce
Confidence 68899999999988776544 3557888888999888 3321 12233 24332 344456699976
Q ss_pred EEc-----cccCc-CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 838 CLK-----DMAGL-LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 838 ~i~-----Dt~G~-l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
.+. ...|. ..|... +.++.++. +++||.+=. |.-..|+-.++++|||.|=+
T Consensus 137 ~~~~~~~~~~~g~~~~~~~l-~~i~~~~~--~~~pi~v~G----GI~~~~~~~~~~aGAd~vvv 193 (218)
T 3jr2_A 137 IYHRSRDAELAGIGWTTDDL-DKMRQLSA--LGIELSITG----GIVPEDIYLFEGIKTKTFIA 193 (218)
T ss_dssp EEECCHHHHHHTCCSCHHHH-HHHHHHHH--TTCEEEEES----SCCGGGGGGGTTSCEEEEEE
T ss_pred eeeeccccccCCCcCCHHHH-HHHHHHhC--CCCCEEEEC----CCCHHHHHHHHHcCCCEEEE
Confidence 551 11132 233322 33444443 367776543 33345566799999988733
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.48 E-value=4.8 Score=46.12 Aligned_cols=190 Identities=12% Similarity=0.071 Sum_probs=111.5
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhh----hccccChHHHHH----HHHHhCCCCceeeeecccccccccC
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCL----KFLKECPWERLA----ELRELIPNIPFQMILRGNSLVGYSN 749 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~----rfl~e~p~erl~----~lr~~~p~~~~qml~Rg~n~vgy~~ 749 (1427)
.+.++.++.|..+-+ .|.+.|++||-+|-..+- .--.+..|+|+. .|++. .+++++.= .
T Consensus 46 ~~~~~al~~A~~~v~--~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~-~~vpISID----------T 112 (314)
T 3tr9_A 46 LDLNSALRTAEKMVD--EGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKR-FPQLISVD----------T 112 (314)
T ss_dssp CSHHHHHHHHHHHHH--TTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHH-CCSEEEEE----------C
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhh-CCCeEEEe----------C
Confidence 467888899998877 799999999865532211 111233455543 33333 24444431 1
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCC---------CHH
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKY---------SLN 820 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~---------~~~ 820 (1427)
+ .-+.+++|.++|.++|.=....++ ....+.+++.|. -+. ++.. -+.|..-.. -.+
T Consensus 113 ~----~~~Va~aAl~aGa~iINDVsg~~~----~~m~~v~a~~g~---~vV--lMh~--~G~P~tmq~~~~ydvv~ev~~ 177 (314)
T 3tr9_A 113 S----RPRVMREAVNTGADMINDQRALQL----DDALTTVSALKT---PVC--LMHF--PSETRKPGSTTHFYFLQSVKK 177 (314)
T ss_dssp S----CHHHHHHHHHHTCCEEEETTTTCS----TTHHHHHHHHTC---CEE--EECC--CCTTCCTTSSCHHHHHHHHHH
T ss_pred C----CHHHHHHHHHcCCCEEEECCCCCc----hHHHHHHHHhCC---eEE--EECC--CCCCcccccccccchHHHHHH
Confidence 2 233467888889998876666653 244566677776 221 2222 134422111 157
Q ss_pred HHHHHHHHHHHCCCC--EEEEccc-cC---cC-CHHHHHHHHHHHHHH-cCCceEEE-e-------------ecCCcchH
Q psy15244 821 YYEDLAKQLVESGAQ--VLCLKDM-AG---LL-KPTAAKLLIGSFREK-YPNILIHV-H-------------THDMAGTG 878 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad--~i~i~Dt-~G---~l-~P~~~~~lv~~lr~~-~p~ipi~~-H-------------~Hnd~GlA 878 (1427)
++.+.++.+.++|++ .|.| |- .| .. ++.+-.++++.++.- ..+.|+-+ . ..+-.+..
T Consensus 178 ~l~~~i~~a~~~GI~~~~Iil-DPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~PvL~G~SRKsfig~~~~~~~~~R~~~t 256 (314)
T 3tr9_A 178 ELQESIQRCKKAGISEDRIII-DPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVLSGWSRKSMIGDVLNQPPENRLFGS 256 (314)
T ss_dssp HHHHHHHHHHHTTCCGGGEEE-ECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCBEECCTTCHHHHHHHTCCGGGCHHHH
T ss_pred HHHHHHHHHHHcCCCHhHEEE-eCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCEEEEechhhhhhhhcCCChHHhHHHH
Confidence 788888999999996 4444 54 34 22 356677777776542 13677544 1 22344555
Q ss_pred HHHHHHHHHhcCCEEEec
Q psy15244 879 VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 879 ~An~laAi~AGad~VD~a 896 (1427)
+|.+..|++.||++|-+-
T Consensus 257 ~a~~~~a~~~Ga~IvRvH 274 (314)
T 3tr9_A 257 IAADVLAVYHGASIIRTH 274 (314)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCcEEEeC
Confidence 566778889999998654
|
| >3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.33 Score=51.09 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.6
Q ss_pred EEEecCCCeeCCCCEEEEEe
Q psy15244 1407 EIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1407 ~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
+.+|++||.|++||+|++++
T Consensus 119 ~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 119 TRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EECSCTTCEECTTCEEEEEC
T ss_pred eEEEeCcCEEcCCCEEEEEC
Confidence 46789999999999999875
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.20 E-value=4 Score=46.91 Aligned_cols=204 Identities=13% Similarity=0.092 Sum_probs=104.8
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHH----HHHHHhCCCCc
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERL----AELRELIPNIP 734 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl----~~lr~~~p~~~ 734 (1427)
+.+|--+|=||.+. ++.+..++.|..+-+ .|.+.|++||-+|--. -..-.+..++|+ +.+++..|+++
T Consensus 48 lNvTPDSFsdgg~~-----~~~~~a~~~A~~~v~--~GAdIIDIGgeSTrPG-~~v~~~eEl~Rv~pvI~~l~~~~~~vp 119 (318)
T 2vp8_A 48 VNRTPDSFYDKGAT-----FSDAAARDAVHRAVA--DGADVIDVGGVKAGPG-ERVDVDTEITRLVPFIEWLRGAYPDQL 119 (318)
T ss_dssp EC-------------------CHHHHHHHHHHHH--TTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred EeCCCCcccCCCcc-----CCHHHHHHHHHHHHH--CCCCEEEECCCcCCCC-CCCCHHHHHHHHHHHHHHHHhhCCCCe
Confidence 34455557888763 456888888888877 7999999998554211 111123456664 56666666777
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-CC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-PN 813 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-p~ 813 (1427)
++.=. | .-+.+++|.++|.++|.=....++ ...++.+++.|. -+. .+.+. +. |.
T Consensus 120 ISIDT----------~----~~~VaeaAl~aGa~iINDVsg~~d----~~m~~vaa~~g~---~vV-lmh~~---G~~p~ 174 (318)
T 2vp8_A 120 ISVDT----------W----RAQVAKAACAAGADLINDTWGGVD----PAMPEVAAEFGA---GLV-CAHTG---GALPR 174 (318)
T ss_dssp EEEEC----------S----CHHHHHHHHHHTCCEEEETTSSSS----TTHHHHHHHHTC---EEE-EECC---------
T ss_pred EEEeC----------C----CHHHHHHHHHhCCCEEEECCCCCc----hHHHHHHHHhCC---CEE-EECCC---CCCcc
Confidence 65422 2 233467888889998876655542 344566777777 221 11221 12 32
Q ss_pred C----CCCC----------HHHHHHHHHHHHHCCCC--EEEEccc-cCcC-CHHHHHHHHHHHHHHc-CCceEEEe----
Q psy15244 814 K----KKYS----------LNYYEDLAKQLVESGAQ--VLCLKDM-AGLL-KPTAAKLLIGSFREKY-PNILIHVH---- 870 (1427)
Q Consensus 814 ~----~~~~----------~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l-~P~~~~~lv~~lr~~~-p~ipi~~H---- 870 (1427)
. ..|. .+++.+.++.+.++|+. .|.| |. .|.. +.++-.++++.+++-- .+.|+-+=
T Consensus 175 tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~Iil-DPG~GF~Kt~~~nl~ll~~l~~l~~lg~PvL~G~SrK 253 (318)
T 2vp8_A 175 TRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLI-DPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNK 253 (318)
T ss_dssp -------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ETTTTCCTTSHHHHHHHHTHHHHHTTSSCBEECCC--
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEE-cCCCCcccCHHHHHHHHHHHHHHHhCCCCEEEEeCcc
Confidence 1 1121 27778888999999986 4443 43 2332 3355666666666421 14554321
Q ss_pred ----------ecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 871 ----------THDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 871 ----------~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
..+-..-.+|.+..|+..||++|.+-
T Consensus 254 sfig~~~g~~~~~r~~~t~a~~~~a~~~Ga~IvRvH 289 (318)
T 2vp8_A 254 DVVGETLGVDLTERLEGTLAATALAAAAGARMFRVH 289 (318)
T ss_dssp -------------CHHHHHHHHHHHHHTTCCEEEES
T ss_pred hhhhhhcCCChHHhHHHHHHHHHHHHHCCCeEEEcC
Confidence 12223344556678888999998765
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=1.6 Score=49.29 Aligned_cols=179 Identities=18% Similarity=0.089 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCc--------hh-hhhhccc-----cChHHHHHHHHHhCCCCceeeeecccccc
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAV--------SH-TCLKFLK-----ECPWERLAELRELIPNIPFQMILRGNSLV 745 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggat--------fd-~~~rfl~-----e~p~erl~~lr~~~p~~~~qml~Rg~n~v 745 (1427)
.+.-+++++.|.+ . ++.||++.+.. .. .+.|-+. ++-++-++.+|+. +++++-.+
T Consensus 29 ~~~~~~~~~~l~~--~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~~~Pii~m------- 97 (271)
T 1ujp_A 29 REGFLQAVEEVLP--Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-TEKPLFLM------- 97 (271)
T ss_dssp HHHHHHHHHHHGG--G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CCSCEEEE-------
T ss_pred hHHHHHHHHHHHh--c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEE-------
Confidence 3567778889988 5 99999986642 00 0111111 1124667888888 67775554
Q ss_pred cccCC-CcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 746 GYSNY-SPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 746 gy~~~-~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
+|.+- -..-...|++.+.++|+|.+-+.|... +.....++.+++.|. .. +... .| ..+.+-+..
T Consensus 98 ~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~--ee~~~~~~~~~~~gl---~~---i~li----ap---~s~~eri~~ 162 (271)
T 1ujp_A 98 TYLNPVLAWGPERFFGLFKQAGATGVILPDLPP--DEDPGLVRLAQEIGL---ET---VFLL----AP---TSTDARIAT 162 (271)
T ss_dssp CCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCG--GGCHHHHHHHHHHTC---EE---ECEE----CT---TCCHHHHHH
T ss_pred ecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCH--HHHHHHHHHHHHcCC---ce---EEEe----CC---CCCHHHHHH
Confidence 33330 001247899999999999888877664 667778888999987 32 1222 34 234443333
Q ss_pred HHHHHHHCCCCEEEEcc---ccCcCC--HHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 825 LAKQLVESGAQVLCLKD---MAGLLK--PTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~D---t~G~l~--P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
+.+.+...+++.= ++|.-+ +....++++.+|+.. ++||-+=+ |.......+.+ +|||.|=
T Consensus 163 ----ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGf----GI~t~e~a~~~-~~ADgVI 227 (271)
T 1ujp_A 163 ----VVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVGF----GVSGKATAAQA-AVADGVV 227 (271)
T ss_dssp ----HHTTCCSCEEEECC------------CCHHHHHHHHTTC-CSCEEEES----CCCSHHHHHHH-TTSSEEE
T ss_pred ----HHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc-CCCEEEEc----CCCCHHHHHHh-cCCCEEE
Confidence 3333433343321 334332 233467899999876 78875432 22223333335 8998763
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=90.08 E-value=4 Score=44.55 Aligned_cols=210 Identities=16% Similarity=0.036 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCC-CchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGG-AVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~gg-atfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v 759 (1427)
++..++++.+.+ .|++.|++... +.+ .-....++.++.+++.. ++++..- | +-..+ ..+
T Consensus 33 ~~~~~~a~~~~~--~G~d~i~v~~~~~~~-----~~~~~~~~~i~~i~~~~-~ipvi~~--g-----~i~~~-----~~~ 92 (253)
T 1h5y_A 33 GDPVEMAVRYEE--EGADEIAILDITAAP-----EGRATFIDSVKRVAEAV-SIPVLVG--G-----GVRSL-----EDA 92 (253)
T ss_dssp ECHHHHHHHHHH--TTCSCEEEEECCCCT-----TTHHHHHHHHHHHHHHC-SSCEEEE--S-----SCCSH-----HHH
T ss_pred ccHHHHHHHHHH--cCCCEEEEEeCCccc-----cCCcccHHHHHHHHHhc-CCCEEEE--C-----CCCCH-----HHH
Confidence 467889999988 79988876421 111 00112366778888775 4554431 1 11112 236
Q ss_pred HHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEee---ccC-CCCCCCC-CCHHHHHHHHHHHHHCCC
Q psy15244 760 RLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYA---GDL-TNPNKKK-YSLNYYEDLAKQLVESGA 834 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t---~d~-~~p~~~~-~~~~~~~~~a~~l~~~Ga 834 (1427)
+.+.++|+|.+.+-..+ +.+.....+.++..|.. .+...+... +++ ....... .+.....+.++.+.++|+
T Consensus 93 ~~~~~~Gad~V~i~~~~--~~~~~~~~~~~~~~g~~--~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~ 168 (253)
T 1h5y_A 93 TTLFRAGADKVSVNTAA--VRNPQLVALLAREFGSQ--STVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGA 168 (253)
T ss_dssp HHHHHHTCSEEEESHHH--HHCTHHHHHHHHHHCGG--GEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTC
T ss_pred HHHHHcCCCEEEEChHH--hhCcHHHHHHHHHcCCC--cEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCC
Confidence 78888999999887643 22222233344444530 111111110 000 0000000 001123466788888999
Q ss_pred CEEEE--ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEeccccCCCCCCCCcHHH
Q psy15244 835 QVLCL--KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVAADSMSGICSQPAMGT 911 (1427)
Q Consensus 835 d~i~i--~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~av~GmG~~tgn~~lE~ 911 (1427)
+.|.+ .+..|..... -.++++.+++.. ++||-.= .|.. ..++..++++||+.|=+.-.=+. +.-++++
T Consensus 169 d~i~~~~~~~~g~~~~~-~~~~i~~l~~~~-~~pvia~----GGi~~~~~~~~~~~~Ga~~v~vgsal~~---~~~~~~~ 239 (253)
T 1h5y_A 169 GEILLTSIDRDGTGLGY-DVELIRRVADSV-RIPVIAS----GGAGRVEHFYEAAAAGADAVLAASLFHF---RVLSIAQ 239 (253)
T ss_dssp SEEEEEETTTTTTCSCC-CHHHHHHHHHHC-SSCEEEE----SCCCSHHHHHHHHHTTCSEEEESHHHHT---TSSCHHH
T ss_pred CEEEEecccCCCCcCcC-CHHHHHHHHHhc-CCCEEEe----CCCCCHHHHHHHHHcCCcHHHHHHHHHc---CCCCHHH
Confidence 99888 3433332221 245667777776 7887654 3444 36778888899998755432222 1235788
Q ss_pred HHHHHHhCCCCC
Q psy15244 912 IVSCLENTDKRC 923 (1427)
Q Consensus 912 vv~~L~~~g~~t 923 (1427)
+...|+..|++.
T Consensus 240 ~~~~l~~~g~~~ 251 (253)
T 1h5y_A 240 VKRYLKERGVEV 251 (253)
T ss_dssp HHHHHHHTTCBC
T ss_pred HHHHHHHcCCCC
Confidence 888888877653
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.02 E-value=5.2 Score=45.80 Aligned_cols=130 Identities=11% Similarity=-0.001 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCCEEEEeccCC-h------HHHHHHHHHHHHHhcCCCcEEEEEEEeec--cCCCCCCCCCCH-HHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN-S------VPNLVKGMDAVQQVTGGSTIVEATICYAG--DLTNPNKKKYSL-NYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n-d------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~--d~~~p~~~~~~~-~~~~~~a 826 (1427)
..++.|.+.|.|.+.+..... + ++.+.++++.+++.|. .+..- +|.. ++.+ ..++ +.+.+.+
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~---p~lv~-~~~~g~~v~~----~~~~~~~v~~aa 183 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGL---LSIIE-PVVRPPRCGD----KFDREQAIIDAA 183 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC---EEEEE-EEECCCSSCS----CCCHHHHHHHHH
T ss_pred hhHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCC---cEEEE-EECCCCcccc----CCChhHHHHHHH
Confidence 458899999999988544322 2 3567778888888888 43332 3331 2222 2456 8888889
Q ss_pred HHHHHCCCCEEEEccc-cCcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 827 KQLVESGAQVLCLKDM-AGLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~Dt-~G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
+.+.++|||.+.+.=+ .|...++...++++...... .+| |-+=.=.+.-.-+.+.-.|+++|++.|-+
T Consensus 184 ~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~-~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v 253 (304)
T 1to3_A 184 KELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHI-NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLA 253 (304)
T ss_dssp HHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTC-CSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccC-CCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999887653 22237788888888766545 567 53322224445567788889999988754
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=7.4 Score=44.37 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCC-EEEEeccC----------ChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 755 VGAFCRLASQAGID-IFRVFDPL----------NSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 755 v~~~v~~a~~~Gid-~~rif~~~----------nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
..+.++++.+.|+| .+-|-.+. .+.+++.+.++.+++. +. -+.+ -. .|+ .+.+.+
T Consensus 108 ~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~---Pv~v--Ki-----~~~---~~~~~~ 174 (311)
T 1jub_A 108 NIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTK---PLGV--KL-----PPY---FDLVHF 174 (311)
T ss_dssp HHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCS---CEEE--EE-----CCC---CSHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCC---CEEE--EE-----CCC---CCHHHH
Confidence 34456667788999 88775431 1667788888888876 33 1211 11 232 467788
Q ss_pred HHHHHHHHHCCCCEEEEccccC----------------------cCC---HHHHHHHHHHHHHHcC-CceEEEeecCCcc
Q psy15244 823 EDLAKQLVESGAQVLCLKDMAG----------------------LLK---PTAAKLLIGSFREKYP-NILIHVHTHDMAG 876 (1427)
Q Consensus 823 ~~~a~~l~~~Gad~i~i~Dt~G----------------------~l~---P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~G 876 (1427)
.++++.+.++|+|.|.+.++.+ +.- .....++++.+++.++ ++||-.=.--..+
T Consensus 175 ~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~ 254 (311)
T 1jub_A 175 DIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETG 254 (311)
T ss_dssp HHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSH
T ss_pred HHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 8999999999999998887641 111 1134578899998875 7998765544333
Q ss_pred hHHHHHHHHHHhcCCEEEeccccC
Q psy15244 877 TGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~Gm 900 (1427)
..+.+++.+|||.|-..-.=+
T Consensus 255 ---~da~~~l~~GAd~V~vg~~~l 275 (311)
T 1jub_A 255 ---QDAFEHLLCGATMLQIGTALH 275 (311)
T ss_dssp ---HHHHHHHHHTCSEEEECHHHH
T ss_pred ---HHHHHHHHcCCCEEEEchHHH
Confidence 345666678999997665444
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=1 Score=51.29 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=60.2
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCcc-ccc-c-c-eEEEcCCCCCcccCCCCHHHHHHHHHhc
Q psy15244 55 KTMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAH-RTK-V-D-QAFLVGKGMPPVAAYLNIPEIICIAKNN 129 (1427)
Q Consensus 55 ~~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~-~~~-a-D-e~~~i~~~~~~~~~yldi~~Ii~ia~~~ 129 (1427)
.|+++|||.| .|.++..+++++.+.|++++++..+....... ..+ . . +.+. .++.|.+.+.++.+
T Consensus 9 ~m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~--------~Dl~d~~~l~~a~~-- 78 (318)
T 2r6j_A 9 GMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVK--------GELDEHEKLVELMK-- 78 (318)
T ss_dssp CCCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEE--------CCTTCHHHHHHHHT--
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEE--------ecCCCHHHHHHHHc--
Confidence 4567999999 59999999999999999988887654311100 000 0 1 1222 23567778877775
Q ss_pred CCCEEEeCCCccc--ccHHHHHHHHHCC-Cc
Q psy15244 130 NVDAIHPGYGFLS--EREDFAKAVIGAG-LE 157 (1427)
Q Consensus 130 ~vDaI~pg~gfls--E~~~~a~~~e~~G-i~ 157 (1427)
++|+|+-..+... ....+.+++.+.| +.
T Consensus 79 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~ 109 (318)
T 2r6j_A 79 KVDVVISALAFPQILDQFKILEAIKVAGNIK 109 (318)
T ss_dssp TCSEEEECCCGGGSTTHHHHHHHHHHHCCCC
T ss_pred CCCEEEECCchhhhHHHHHHHHHHHhcCCCC
Confidence 5999987665321 1235677777777 54
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=89.79 E-value=1.3 Score=43.70 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCEEEEEcCC----HHHHHHHHHHHHcCCEEEEEecCCCccCc---cccc-----cceEEEcCCCCCcccCCCCHHHHHH
Q psy15244 57 MEKILIANRS----EVAIRVARACNEMGIKSVGIYSEQDKFSA---HRTK-----VDQAFLVGKGMPPVAAYLNIPEIIC 124 (1427)
Q Consensus 57 ~kkVLIagrG----eia~riiraa~elGi~~vav~s~~d~~s~---~~~~-----aDe~~~i~~~~~~~~~yldi~~Ii~ 124 (1427)
.++|.|+|.+ -.+.++++.+.+.|++++.|....+...- +..+ .|-+...- + + .....+++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~-p--~----~~v~~~v~ 76 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYI-N--P----QNQLSEYN 76 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECS-C--H----HHHGGGHH
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEe-C--H----HHHHHHHH
Confidence 5789999954 46889999999999998888665442111 1111 23332211 0 0 11345666
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVL 166 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai 166 (1427)
-|.+.++.+|+-..||. +.++.+.+++.|+.++|++.-.+
T Consensus 77 e~~~~g~k~v~~~~G~~--~~e~~~~a~~~Girvv~nC~gv~ 116 (122)
T 3ff4_A 77 YILSLKPKRVIFNPGTE--NEELEEILSENGIEPVIGCTLVM 116 (122)
T ss_dssp HHHHHCCSEEEECTTCC--CHHHHHHHHHTTCEEEESCHHHH
T ss_pred HHHhcCCCEEEECCCCC--hHHHHHHHHHcCCeEECCcCeEE
Confidence 67778899999888884 56889999999999998655443
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=3.2 Score=46.72 Aligned_cols=185 Identities=16% Similarity=0.148 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhcCCccEEeccC-CCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH-H
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWG-GAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF-C 759 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~g-gatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~-v 759 (1427)
+...+|+.+.+ .|...|.+-- .--|.. ..+.|+.+|+.+ +.++. ... -++..+ +
T Consensus 73 ~p~~~A~~y~~--~GA~~isvltd~~~f~G--------s~~~l~~ir~~v-~lPvl--~kd-----------fiid~~qv 128 (272)
T 3qja_A 73 DPAKLAQAYQD--GGARIVSVVTEQRRFQG--------SLDDLDAVRASV-SIPVL--RKD-----------FVVQPYQI 128 (272)
T ss_dssp CHHHHHHHHHH--TTCSEEEEECCGGGHHH--------HHHHHHHHHHHC-SSCEE--EES-----------CCCSHHHH
T ss_pred CHHHHHHHHHH--cCCCEEEEecChhhcCC--------CHHHHHHHHHhC-CCCEE--ECc-----------cccCHHHH
Confidence 56788888888 7988888731 111221 235677788764 44432 221 123333 8
Q ss_pred HHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q psy15244 760 RLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL 839 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i 839 (1427)
+.|.+.|.|.+.+-++.-+.+.++..++.+++.|+ .+-+. .++.+.+. .+.++|+|.|.+
T Consensus 129 ~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl---~~lve-------------v~t~ee~~----~A~~~Gad~IGv 188 (272)
T 3qja_A 129 HEARAHGADMLLLIVAALEQSVLVSMLDRTESLGM---TALVE-------------VHTEQEAD----RALKAGAKVIGV 188 (272)
T ss_dssp HHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTC---EEEEE-------------ESSHHHHH----HHHHHTCSEEEE
T ss_pred HHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCC---cEEEE-------------cCCHHHHH----HHHHCCCCEEEE
Confidence 89999999999997766566778888999999998 43221 25555543 344679999998
Q ss_pred ccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchH-HHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 840 KDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTG-VATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 840 ~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
--...-..+.. .+.+..|++.+| ++|+-.= .|.. ..+.....++||+.|=+.-.=| ..++.+..+..|.
T Consensus 189 ~~r~l~~~~~d-l~~~~~l~~~v~~~~pvVae----gGI~t~edv~~l~~~GadgvlVGsal~----~a~dp~~~~~~l~ 259 (272)
T 3qja_A 189 NARDLMTLDVD-RDCFARIAPGLPSSVIRIAE----SGVRGTADLLAYAGAGADAVLVGEGLV----TSGDPRAAVADLV 259 (272)
T ss_dssp ESBCTTTCCBC-TTHHHHHGGGSCTTSEEEEE----SCCCSHHHHHHHHHTTCSEEEECHHHH----TCSCHHHHHHHHH
T ss_pred CCCcccccccC-HHHHHHHHHhCcccCEEEEE----CCCCCHHHHHHHHHcCCCEEEEcHHHh----CCCCHHHHHHHHH
Confidence 63221111111 123445566666 6776442 2443 5677788899999874321111 2234455555555
Q ss_pred hC
Q psy15244 918 NT 919 (1427)
Q Consensus 918 ~~ 919 (1427)
..
T Consensus 260 ~~ 261 (272)
T 3qja_A 260 TA 261 (272)
T ss_dssp TT
T ss_pred hh
Confidence 43
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=89.63 E-value=3.6 Score=47.17 Aligned_cols=201 Identities=12% Similarity=0.037 Sum_probs=114.0
Q ss_pred eEEeecCcc---cCCCCCCCcccCH-HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCc
Q psy15244 659 ILLTDTTFR---DAHQSLLATRVRT-YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIP 734 (1427)
Q Consensus 659 v~i~DtTlR---DG~Qsl~a~r~~t-~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~ 734 (1427)
.-|+|+|.= ||-+..+ .+. ++.++.|..+-+ .|.+.|.+++.+|--.+..---+..++.++.+++.. +++
T Consensus 51 m~I~n~tpdsf~d~i~~~~---~~~~~~~~~~A~~~v~--~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~-~vp 124 (310)
T 2h9a_B 51 LEVFDTPPTDWPDILVEPF---KDVINDPVAWAKKCVE--YGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI-DVP 124 (310)
T ss_dssp EEEESSCCSSCCHHHHGGG---TTTTTCHHHHHHHHHH--TTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-SSC
T ss_pred EEEeeCCCcccchhhhhhh---ccHHHHHHHHHHHHHH--cCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC-Cce
Confidence 468887653 6622111 111 567888887776 799999998855421111111122245667777654 667
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCC---EEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGID---IFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid---~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
++.+-.|. .+..-+.+++|+++|.+ ++.=.... +.....+.+++.|. -+ +.+.
T Consensus 125 lsI~DT~~---------~~~~~~V~eaal~aga~~k~iINdvs~~----~~~~~~~~aa~~g~---~v---v~m~----- 180 (310)
T 2h9a_B 125 LMIIGCGV---------EEKDAEIFPVIGEALSGRNCLLSSATKD----NYKPIVATCMVHGH---SV---VASA----- 180 (310)
T ss_dssp EEEECCSC---------HHHHHHHHHHHHHHTTTSCCEEEEECTT----THHHHHHHHHHHTC---EE---EEEC-----
T ss_pred EEEECCCC---------CCCCHHHHHHHHHhCCCCCCEEEECCCC----ccHHHHHHHHHhCC---CE---EEEC-----
Confidence 66533221 11234557888899987 66544443 35566677788887 22 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCC--CEEEEccccC-cC----CHHHHHHHHHH--HH--HHcCCceEEE-eecC------
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGA--QVLCLKDMAG-LL----KPTAAKLLIGS--FR--EKYPNILIHV-HTHD------ 873 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Ga--d~i~i~Dt~G-~l----~P~~~~~lv~~--lr--~~~p~ipi~~-H~Hn------ 873 (1427)
+ -+.+++.++++.+.++|+ +.|.|==..| .. .-....++++. |. +.+ +.|+-+ ++..
T Consensus 181 ~----~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~~al~~~~~l-g~P~l~g~SrK~~~~~e 255 (310)
T 2h9a_B 181 P----LDINLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRLGALTGDKIL-AMPVVCFIGQEAWKAKE 255 (310)
T ss_dssp S----SCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHTTCGGG-CSCBEECHHHHHTTSHH
T ss_pred h----hHHHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHHhhhhhhhcC-CCCEEEEccCccccccc
Confidence 1 157999999999999998 4555533334 22 22233555555 22 123 556433 2211
Q ss_pred ---------------CcchHHHHHHHHHHhcCCEEE
Q psy15244 874 ---------------MAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 874 ---------------d~GlA~An~laAi~AGad~VD 894 (1427)
..|+.++.+..|+.+||++|=
T Consensus 256 s~i~~~~~~g~~~~R~~~~~~a~a~~~~~~Ga~ivr 291 (310)
T 2h9a_B 256 AKDPEVAEWGDYALRAIHWETVTTVALIQAGGHLFV 291 (310)
T ss_dssp HHCSCCGGGCCHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred chhhhcccCCChHHcchhHHHHHHHHHHHcCCCEEE
Confidence 223356667778889999873
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=89.63 E-value=2.2 Score=47.64 Aligned_cols=94 Identities=15% Similarity=0.015 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccc-------------------cCcCCHHHHHHHHHHHHHHcCCceEEEeecCC---
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDM-------------------AGLLKPTAAKLLIGSFREKYPNILIHVHTHDM--- 874 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt-------------------~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd--- 874 (1427)
.+.+.+.+.++.+.+.|+|.|-|... .+-+++....++++++|+.. ++|+++=...+
T Consensus 29 ~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~-~~Pv~~m~~~~~~~ 107 (262)
T 1rd5_A 29 PDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLLSYYKPIM 107 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEECCSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCEEEEecCcHHH
Confidence 34588899999999999998888532 23367888999999999885 89976522111
Q ss_pred -cchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 875 -AGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 875 -~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
.++ -.|.++|||.|...-.++ ..++.++..++..|.+
T Consensus 108 ~~~~-----~~a~~aGadgv~v~d~~~------~~~~~~~~~~~~~g~~ 145 (262)
T 1rd5_A 108 FRSL-----AKMKEAGVHGLIVPDLPY------VAAHSLWSEAKNNNLE 145 (262)
T ss_dssp SCCT-----HHHHHTTCCEEECTTCBT------TTHHHHHHHHHHTTCE
T ss_pred HHHH-----HHHHHcCCCEEEEcCCCh------hhHHHHHHHHHHcCCc
Confidence 122 138999999887642222 2466777777766644
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=89.62 E-value=1.4 Score=43.76 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHc-CCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEM-GIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~el-Gi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
.++++|+|.|..|..+++.+++. |++++++..+... ......... ++ +. .+.+.++++++++|.|+
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~-~~g~~i~g~---------pV--~g-~~~l~~~~~~~~id~vi 70 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRK-KHKTTMQGI---------TI--YR-PKYLERLIKKHCISTVL 70 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGG-GTTCEETTE---------EE--EC-GGGHHHHHHHHTCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcc-cCCCEecCe---------EE--EC-HHHHHHHHHHCCCCEEE
Confidence 56999999999999999999875 8998887654321 111111111 11 12 45788888999999888
Q ss_pred eCCCcccc--cHHHHHHHHHCCCce-eCCCHH
Q psy15244 136 PGYGFLSE--REDFAKAVIGAGLEF-IGPAPN 164 (1427)
Q Consensus 136 pg~gflsE--~~~~a~~~e~~Gi~f-iGps~e 164 (1427)
-..+..+. ...+.+.|.+.|+.+ +-|+..
T Consensus 71 ia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~ 102 (141)
T 3nkl_A 71 LAVPSASQVQKKVIIESLAKLHVEVLTIPNLD 102 (141)
T ss_dssp ECCTTSCHHHHHHHHHHHHTTTCEEEECCCHH
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCeEEECCCHH
Confidence 77654322 136778888999885 346544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=3 Score=43.55 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=55.3
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 58 EKILIANR-SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 58 kkVLIagr-Geia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
++|||.|. |.++..+++.+.+.|++++++..+++..... ....-.+.. .+..+.+.+.++.+ ++|.|+-
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~-------~D~~~~~~~~~~~~--~~d~vi~ 73 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVV-------GDVLQAADVDKTVA--GQDAVIV 73 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEE-------SCTTSHHHHHHHHT--TCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-cCCceEEEE-------ecCCCHHHHHHHHc--CCCEEEE
Confidence 58999995 9999999999999999998887654432110 001111111 23456677777665 4898887
Q ss_pred CCCcccc------c----HHHHHHHHHCCC
Q psy15244 137 GYGFLSE------R----EDFAKAVIGAGL 156 (1427)
Q Consensus 137 g~gflsE------~----~~~a~~~e~~Gi 156 (1427)
..+.... | ..+.+++.+.++
T Consensus 74 ~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 103 (206)
T 1hdo_A 74 LLGTRNDLSPTTVMSEGARNIVAAMKAHGV 103 (206)
T ss_dssp CCCCTTCCSCCCHHHHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCccchHHHHHHHHHHHHHHhCC
Confidence 6553321 1 244556666565
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.71 Score=45.58 Aligned_cols=90 Identities=9% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
+++|+|+|.|.++..+++.+.+.|+++++++.+++............+. + ++.+.+.+.++ .-.++|.|+-
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~-~-------d~~~~~~l~~~-~~~~~d~vi~ 76 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVI-A-------NATEENELLSL-GIRNFEYVIV 76 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEE-C-------CTTCHHHHHTT-TGGGCSEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEE-e-------CCCCHHHHHhc-CCCCCCEEEE
Confidence 5689999999999999999999999988886554321111111112222 1 12344443322 2246899987
Q ss_pred CCCcc-cccHHHHHHHHHCC
Q psy15244 137 GYGFL-SEREDFAKAVIGAG 155 (1427)
Q Consensus 137 g~gfl-sE~~~~a~~~e~~G 155 (1427)
..+.. ..+...+..+.+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ 96 (144)
T 2hmt_A 77 AIGANIQASTLTTLLLKELD 96 (144)
T ss_dssp CCCSCHHHHHHHHHHHHHTT
T ss_pred CCCCchHHHHHHHHHHHHcC
Confidence 76642 22333444444444
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=1.7 Score=46.53 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=58.8
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHH-HcCCEEEEEecCCC-ccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCC
Q psy15244 55 KTMEKILIAN-RSEVAIRVARACN-EMGIKSVGIYSEQD-KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNV 131 (1427)
Q Consensus 55 ~~~kkVLIag-rGeia~riiraa~-elGi~~vav~s~~d-~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~v 131 (1427)
+|||+|||.| .|.++..+++.+. +.|++++++..+++ ..............+. .+..|.+.+.++.+ ++
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~------~D~~d~~~~~~~~~--~~ 74 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIE------GSFQNPGXLEQAVT--NA 74 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEE------CCTTCHHHHHHHHT--TC
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEE------CCCCCHHHHHHHHc--CC
Confidence 4577899999 6999999999999 89999988876544 2211100111111111 13456777777775 68
Q ss_pred CEEEeCCCccc-ccHHHHHHHHHCCC
Q psy15244 132 DAIHPGYGFLS-EREDFAKAVIGAGL 156 (1427)
Q Consensus 132 DaI~pg~gfls-E~~~~a~~~e~~Gi 156 (1427)
|.|+-..|... +...+.+.+.+.|.
T Consensus 75 d~vv~~ag~~n~~~~~~~~~~~~~~~ 100 (221)
T 3r6d_A 75 EVVFVGAMESGSDMASIVKALSRXNI 100 (221)
T ss_dssp SEEEESCCCCHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCCChhHHHHHHHHHhcCC
Confidence 99987665311 12345666777765
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.47 E-value=2.2 Score=46.65 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=100.6
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.+-+ .|+..+|+. +-..+..+.++.+++..|+.. .|...+ -+| .
T Consensus 26 ~~~~~~~~~~~al~~--gGv~~iel~----------~k~~~~~~~i~~l~~~~~~l~-----vgaGtv-----l~~---d 80 (224)
T 1vhc_A 26 DNADDILPLADTLAK--NGLSVAEIT----------FRSEAAADAIRLLRANRPDFL-----IAAGTV-----LTA---E 80 (224)
T ss_dssp SSGGGHHHHHHHHHH--TTCCEEEEE----------TTSTTHHHHHHHHHHHCTTCE-----EEEESC-----CSH---H
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEe----------ccCchHHHHHHHHHHhCcCcE-----EeeCcE-----eeH---H
Confidence 355778899999988 799999985 234566778888999888543 221111 122 4
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.|.++|.|.+..- -.| ...++.+++.|. ..-.. .+|+.. +.++.++|+|.|
T Consensus 81 ~~~~A~~aGAd~v~~p--~~d----~~v~~~ar~~g~---~~i~G-------------v~t~~e----~~~A~~~Gad~v 134 (224)
T 1vhc_A 81 QVVLAKSSGADFVVTP--GLN----PKIVKLCQDLNF---PITPG-------------VNNPMA----IEIALEMGISAV 134 (224)
T ss_dssp HHHHHHHHTCSEEECS--SCC----HHHHHHHHHTTC---CEECE-------------ECSHHH----HHHHHHTTCCEE
T ss_pred HHHHHHHCCCCEEEEC--CCC----HHHHHHHHHhCC---CEEec-------------cCCHHH----HHHHHHCCCCEE
Confidence 4899999999998533 233 335667888877 22111 133333 355678999998
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHh-cCCEEE
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA-GADIVD 894 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~A-Gad~VD 894 (1427)
.+-= ..+..-.+.++.++..+|++|+-. +-|....|+-.-+++ |++.|-
T Consensus 135 k~Fp----a~~~gG~~~lk~l~~~~~~ipvva----iGGI~~~N~~~~l~agga~~v~ 184 (224)
T 1vhc_A 135 KFFP----AEASGGVKMIKALLGPYAQLQIMP----TGGIGLHNIRDYLAIPNIVACG 184 (224)
T ss_dssp EETT----TTTTTHHHHHHHHHTTTTTCEEEE----BSSCCTTTHHHHHTSTTBCCEE
T ss_pred EEee----CccccCHHHHHHHHhhCCCCeEEE----ECCcCHHHHHHHHhcCCCEEEE
Confidence 8821 011111467888888888888743 235556677777887 766653
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=89.41 E-value=1.9 Score=43.71 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCEEEEEcC----CHHHHHHHHHHHHcCCEEEEEecCC--Ccc---Cccc------cccceEEEcCCCCCcccCCCCHHH
Q psy15244 57 MEKILIANR----SEVAIRVARACNEMGIKSVGIYSEQ--DKF---SAHR------TKVDQAFLVGKGMPPVAAYLNIPE 121 (1427)
Q Consensus 57 ~kkVLIagr----Geia~riiraa~elGi~~vav~s~~--d~~---s~~~------~~aDe~~~i~~~~~~~~~yldi~~ 121 (1427)
.++|.|+|- |-++..+++.+.+.|++++.+.... +.. ..+. .-+|-++..- + + ....+
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~v----p--~-~~v~~ 85 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFR----N--S-EAAWG 85 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCS----C--S-THHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEe----C--H-HHHHH
Confidence 457999997 6789999999999999977776544 211 0000 1123222211 1 1 23556
Q ss_pred HHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q psy15244 122 IICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVL 166 (1427)
Q Consensus 122 Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai 166 (1427)
+++-+.+.++.+|+...+.. ..++++++++.|+.++||.---+
T Consensus 86 v~~~~~~~g~~~i~i~~~~~--~~~l~~~a~~~Gi~~igpnc~g~ 128 (145)
T 2duw_A 86 VAQEAIAIGAKTLWLQLGVI--NEQAAVLAREAGLSVVMDRCPAI 128 (145)
T ss_dssp HHHHHHHHTCCEEECCTTCC--CHHHHHHHHTTTCEEECSCCHHH
T ss_pred HHHHHHHcCCCEEEEcCChH--HHHHHHHHHHcCCEEEcCCeeeE
Confidence 66656667888888665543 56788999999999999875443
|
| >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 | Back alignment and structure |
|---|
Probab=89.36 E-value=4.7 Score=44.63 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecc-cccc----cccCCCc----
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRG-NSLV----GYSNYSP---- 752 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg-~n~v----gy~~~~~---- 752 (1427)
+....++.+.+ .|++.||+|++. +...++++.+.+.. +..+..+.-. .+.. ++..-|+
T Consensus 24 ~~~~~l~~~~~--~G~~~vEl~~~~----------~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 90 (269)
T 3ngf_A 24 PFLERFRLAAE--AGFGGVEFLFPY----------DFDADVIARELKQH-NLTQVLFNMPPGDWAAGERGMAAISGREQE 90 (269)
T ss_dssp CHHHHHHHHHH--TTCSEEECSCCT----------TSCHHHHHHHHHHT-TCEEEEEECCCSCTTTTCCBCTTCTTCHHH
T ss_pred CHHHHHHHHHH--cCCCEEEecCCc----------cCCHHHHHHHHHHc-CCcEEEEecCCCccccCCCCcCCCccHHHH
Confidence 34455555666 699999998642 12244444433322 2333322111 0110 1111222
Q ss_pred --chHHHHHHHHHhcCCCEEEEeccC----Ch-------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCH
Q psy15244 753 --AEVGAFCRLASQAGIDIFRVFDPL----NS-------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSL 819 (1427)
Q Consensus 753 --nvv~~~v~~a~~~Gid~~rif~~~----nd-------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~ 819 (1427)
+..+..++.|.+.|++.+++.... +. .+.++...+.+++.|. .+ ++.....+..|...-.+.
T Consensus 91 ~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv---~l--~lE~~n~~~~~~~~~~~~ 165 (269)
T 3ngf_A 91 FRDNVDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGI---TV--LVEPLNTRNMPGYFIVHQ 165 (269)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTC---EE--EECCCCTTTSTTBSCCCH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC---EE--EEeeCCcccCccchhcCH
Confidence 235667888999999999886541 11 2456667777888887 22 222111000112223577
Q ss_pred HHHHHHHHHHHHCCCCEEE-EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 820 NYYEDLAKQLVESGAQVLC-LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Gad~i~-i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
+.+.++++.+ |.+.+. .-|+.=+..- -.+....++.. .+--.++|.||..|- .
T Consensus 166 ~~~~~l~~~v---~~~~vg~~~D~~h~~~~--g~d~~~~l~~~-~~~i~~vHl~D~~~r--------------------~ 219 (269)
T 3ngf_A 166 LEAVGLVKRV---NRPNVAVQLDLYHAQIM--DGDLTRLIEKM-NGAFSHVQIASVPDR--------------------H 219 (269)
T ss_dssp HHHHHHHHHH---CCTTEEEEEEHHHHHHH--TCCHHHHHHHT-TTSEEEEEECCTTTC--------------------C
T ss_pred HHHHHHHHHh---CCCCCCeEEEhhhHHhh--CCCHHHHHHHh-hhhEEEEEEecCCCC--------------------C
Confidence 7777777665 433333 3465422210 01233334433 355579999997531 1
Q ss_pred cCCCCCCCCcHHHHHHHHHhCCCCCCC
Q psy15244 899 SMSGICSQPAMGTIVSCLENTDKRCGI 925 (1427)
Q Consensus 899 GmG~~tgn~~lE~vv~~L~~~g~~tgi 925 (1427)
-.| .|.-+...++..|+..|++--+
T Consensus 220 ~~G--~G~id~~~~~~~L~~~gy~g~i 244 (269)
T 3ngf_A 220 EPD--EGELNYPYLFSVLESVGYRGWV 244 (269)
T ss_dssp CTT--SSSBCHHHHHHHHHHTTCCSEE
T ss_pred CCC--CCccCHHHHHHHHHHcCCCceE
Confidence 233 6788999999999998776433
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=2.4 Score=48.75 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhhcCCccE-EeccCCCchhhhhhccccChH-HHHHHHHHhCCCCceeeee-cccccccccCCCcchHH
Q psy15244 680 TYDLKKVSPFVANRFNNLYS-LEMWGGAVSHTCLKFLKECPW-ERLAELRELIPNIPFQMIL-RGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~-iE~~ggatfd~~~rfl~e~p~-erl~~lr~~~p~~~~qml~-Rg~n~vgy~~~~~nvv~ 756 (1427)
.+....|.+.-.+ .+-.. |.+..| +..|.....+ ..++.+.+...++|+.+.+ -|. + .
T Consensus 28 ~e~~~Ail~AAee--~~sPvIlq~s~g-----~~~y~g~~~~~~~v~~aa~~~~~VPValHlDHg~---------~---~ 88 (323)
T 2isw_A 28 MEQIQGIMKAVVQ--LKSPVILQCSRG-----ALKYSDMIYLKKLCEAALEKHPDIPICIHLDHGD---------T---L 88 (323)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEEEHH-----HHHHTTTHHHHHHHHHHHHHCTTSCEEEEEEEEC---------S---H
T ss_pred HHHHHHHHHHHHH--hCCCEEEECChh-----HHHhCCHHHHHHHHHHHHHhcCCCcEEEECCCCC---------C---H
Confidence 3445555555555 33332 444322 2344432222 2234444444667766543 232 1 3
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCC---CCCCCCCCHHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLT---NPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~---~p~~~~~~~~~~~~~a~~l 829 (1427)
+.+.+|.++|.+.+-+=.|--++ +.-++.+++++..|. .||+-|-..+..- +.+...++++...+++++
T Consensus 89 e~i~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gv---sVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~- 164 (323)
T 2isw_A 89 ESVKMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSV---SVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVEL- 164 (323)
T ss_dssp HHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTC---EEEEEESCC----------CCCCCHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEeCCccCCccCcccccccCCHHHHHHHHHH-
Confidence 45889999999887554444443 345677888888888 8888776654211 112234778888877765
Q ss_pred HHCCCCEEEEc--cccCcCC----HH--HHHHHHHHHHHHcCCceEEEeec-------------------CCcchHHHHH
Q psy15244 830 VESGAQVLCLK--DMAGLLK----PT--AAKLLIGSFREKYPNILIHVHTH-------------------DMAGTGVATT 882 (1427)
Q Consensus 830 ~~~Gad~i~i~--Dt~G~l~----P~--~~~~lv~~lr~~~p~ipi~~H~H-------------------nd~GlA~An~ 882 (1427)
.|+|.|.++ -.=|.-+ |. --.++++.+++.+ ++||-+|.= ++.|......
T Consensus 165 --TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~-~vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i 241 (323)
T 2isw_A 165 --TGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLT-GIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESI 241 (323)
T ss_dssp --HCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHH-CSCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHH
T ss_pred --HCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHh-CCCeEEECCCCCCHHHHHHHHHhccccccCCCCCHHHH
Confidence 599987765 2334433 33 2246788889888 899999983 3668888888
Q ss_pred HHHHHhcCCEEEec
Q psy15244 883 LACVKAGADIVDVA 896 (1427)
Q Consensus 883 laAi~AGad~VD~a 896 (1427)
..|+..|+.-|+..
T Consensus 242 ~~ai~~GV~KiNi~ 255 (323)
T 2isw_A 242 VHAIGEGVCKINVD 255 (323)
T ss_dssp HHHHHTTEEEEEEC
T ss_pred HHHHHCCCeEEEEC
Confidence 88888888777664
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=5.6 Score=45.47 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCC---EEEEeccC----------ChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGID---IFRVFDPL----------NSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid---~~rif~~~----------nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+.++++.+.|+| .+.|-.+. .+.+++.+.++.+++. +. -+.+ -. .++ .+.+
T Consensus 108 ~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~---Pv~v--K~-----~~~---~~~~ 174 (314)
T 2e6f_A 108 NVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGL---PFGV--KM-----PPY---FDIA 174 (314)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCS---CEEE--EE-----CCC---CCHH
T ss_pred HHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCC---CEEE--EE-----CCC---CCHH
Confidence 34455666677889 77775431 1667788888888876 44 2221 11 232 4678
Q ss_pred HHHHHHHHHHHCC-CCEEEEccccC----------------------cC----CHHHHHHHHHHHHHHcCCceEEEeecC
Q psy15244 821 YYEDLAKQLVESG-AQVLCLKDMAG----------------------LL----KPTAAKLLIGSFREKYPNILIHVHTHD 873 (1427)
Q Consensus 821 ~~~~~a~~l~~~G-ad~i~i~Dt~G----------------------~l----~P~~~~~lv~~lr~~~p~ipi~~H~Hn 873 (1427)
.+.++++.+.++| +|.|.+.++.| +. .| ...++++.+++.+|++||-.=.--
T Consensus 175 ~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p-~~~~~i~~v~~~~~~ipvi~~GGI 253 (314)
T 2e6f_A 175 HFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILP-TALANVNAFYRRCPDKLVFGCGGV 253 (314)
T ss_dssp HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHH-HHHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccH-HHHHHHHHHHHhcCCCCEEEECCC
Confidence 8899999999999 99998877652 11 12 345788999988878998765433
Q ss_pred CcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 874 MAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 874 d~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
..+ ..+.+++.+|||.|-.+-.=+
T Consensus 254 ~~~---~da~~~l~~GAd~V~ig~~~l 277 (314)
T 2e6f_A 254 YSG---EDAFLHILAGASMVQVGTALQ 277 (314)
T ss_dssp CSH---HHHHHHHHHTCSSEEECHHHH
T ss_pred CCH---HHHHHHHHcCCCEEEEchhhH
Confidence 333 355666788999986654433
|
| >3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=89.02 E-value=0.45 Score=50.02 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=33.0
Q ss_pred EEEEecCCCEEecCCEEEEEEc--C-----CceeeeecCCCeEEEEEEecCCCeeCCCC-EEEEE
Q psy15244 1369 IEVKVKVGQQVKKNDVLIVMSV--M-----KTETLIHASADGVVKEIFVEVGGQVAQND-LVVVL 1425 (1427)
Q Consensus 1369 ~~v~V~~Gd~V~~G~~l~~iea--m-----Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~-~L~~i 1425 (1427)
.+++|++||+|++||+|+...- . .+.++|.-.-......+....| .|.+|+ +|+.+
T Consensus 118 F~~~V~~Gd~Vk~Gd~L~~fD~~~Ik~~g~~~~tpvvvtN~~~~~~~~~~~g-~V~~g~~~~~~v 181 (183)
T 3our_B 118 FTRIAEEGQTVKAGDTVIEFDLALLEEKAKSTLTPVVISNMDEIKELNKLSG-SVVVGETPVLRV 181 (183)
T ss_dssp EEECSCTTCEECTTCEEEEECHHHHHHHSSBCCEEEEESCGGGCSEEEECCS-EECTTTSEEEEE
T ss_pred ceEEEeCcCEEcCCCEEEEECHHHHHHcCCCCeEEEEEEcchhcceEeeccC-cEeCCCEEEEEE
Confidence 3689999999999999998852 1 1333333222222223334444 577776 44444
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.77 E-value=1.5 Score=47.93 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhhcCCccEEecc--CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMW--GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~--ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
.+..+.++.+.+ .|++.+|+. .|-.+. -+. .-.+.++.|++.. +.++...+ |.+ + ...+
T Consensus 23 ~~~~~~i~~~~~--~G~d~i~l~~~dg~f~~----~~~-~~~~~i~~l~~~~-~~~~~v~l-------~vn---d-~~~~ 83 (230)
T 1rpx_A 23 SKLGEQVKAIEQ--AGCDWIHVDVMDGRFVP----NIT-IGPLVVDSLRPIT-DLPLDVHL-------MIV---E-PDQR 83 (230)
T ss_dssp GGHHHHHHHHHH--TTCCCEEEEEEBSSSSS----CBC-CCHHHHHHHGGGC-CSCEEEEE-------ESS---S-HHHH
T ss_pred HHHHHHHHHHHH--CCCCEEEEeeccCCccc----ccc-cCHHHHHHHHhcc-CCcEEEEE-------Eec---C-HHHH
Confidence 356667777777 699888875 111101 122 2246777888765 33433322 111 1 3357
Q ss_pred HHHHHhcCCCEEEEecc--CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 759 CRLASQAGIDIFRVFDP--LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~--~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
++.+.++|+|.+.+-.. .. +.+...++.+++.|. .+-..+. |. .+.+.+.. + ..++|.
T Consensus 84 v~~~~~~Gad~v~vh~~~~~~--~~~~~~~~~~~~~g~---~ig~~~~-------p~---t~~e~~~~----~-~~~~d~ 143 (230)
T 1rpx_A 84 VPDFIKAGADIVSVHCEQSST--IHLHRTINQIKSLGA---KAGVVLN-------PG---TPLTAIEY----V-LDAVDL 143 (230)
T ss_dssp HHHHHHTTCSEEEEECSTTTC--SCHHHHHHHHHHTTS---EEEEEEC-------TT---CCGGGGTT----T-TTTCSE
T ss_pred HHHHHHcCCCEEEEEecCccc--hhHHHHHHHHHHcCC---cEEEEeC-------CC---CCHHHHHH----H-HhhCCE
Confidence 99999999999987765 33 345667777888887 5443322 21 22222211 1 247886
Q ss_pred EEEcccc-----CcCCHHHHHHHHHHHHHHcC----CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCC
Q psy15244 837 LCLKDMA-----GLLKPTAAKLLIGSFREKYP----NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQP 907 (1427)
Q Consensus 837 i~i~Dt~-----G~l~P~~~~~lv~~lr~~~p----~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~ 907 (1427)
| +.|+. |.-.+....+.++.+|+..+ ++||.+ +.|....|.-.++++||+.|.+.- ++ ...+
T Consensus 144 v-l~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v----~GGI~~~n~~~~~~aGad~vvvgS-aI---~~a~ 214 (230)
T 1rpx_A 144 V-LIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANALVAGS-AV---FGAP 214 (230)
T ss_dssp E-EEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCEEEESH-HH---HTSS
T ss_pred E-EEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEEEECh-hh---hCCC
Confidence 5 34554 22223344555666776553 677655 345555788888999999998773 22 2344
Q ss_pred cHHHHHHHHHh
Q psy15244 908 AMGTIVSCLEN 918 (1427)
Q Consensus 908 ~lE~vv~~L~~ 918 (1427)
+.++.+..|+.
T Consensus 215 dp~~a~~~l~~ 225 (230)
T 1rpx_A 215 DYAEAIKGIKT 225 (230)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 45555555543
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.61 E-value=5.2 Score=47.75 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHcCCce-EEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 857 SFREKYPNIL-IHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 857 ~lr~~~p~ip-i~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.|++.+++.| +.+|.|+|.|..-.+..++++.|+..+++.
T Consensus 249 ~L~~~v~~~P~LVlhghStDy~~~e~l~~~V~~GiaklNVg 289 (450)
T 3txv_A 249 KLSATLGQLHGMVFEAHSTDYQTPDALRELVADGFAILKVG 289 (450)
T ss_dssp HHHHGGGTSTTCEEEESCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred HHHHHhccCCCEEEecCCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 4455555678 999999999999999999999999999986
|
| >3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
|---|
Probab=88.52 E-value=0.29 Score=57.16 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=47.3
Q ss_pred EEEEEecCCCEEecCCEEEEEEcC-CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSVM-KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ieam-Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.-..|+.|+....=..-..+++. .-+..|.++.+|+|.+++|++|+.|++||+|++|+
T Consensus 30 v~~~~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld 89 (359)
T 3lnn_A 30 LAVAPATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTID 89 (359)
T ss_dssp CCEEECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEE
T ss_pred eEEEEeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEC
Confidence 334455566555555566778874 67889999999999999999999999999999986
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.49 E-value=3.6 Score=46.45 Aligned_cols=147 Identities=17% Similarity=0.102 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
...+.+.+++|.+.|+.-+.|. .+++....+ ..+..+. .+.. .. +.|.. ..+.+--+.-++++.+
T Consensus 73 ~~dI~~lc~eA~~~g~aaVCV~--P~~V~~a~~---~L~~s~V---~V~t----Vi--gFP~G-~~~~~~Kv~Ea~~Ai~ 137 (288)
T 3oa3_A 73 GSQIDVLCAEAKEYGFATVCVR--PDYVSRAVQ---YLQGTQV---GVTC----VI--GFHEG-TYSTDQKVSEAKRAMQ 137 (288)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEC--GGGHHHHHH---HTTTSSC---EEEE----EE--STTTS-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEC--HHHHHHHHH---HcCCCCC---eEEE----Ee--CCCCC-CCcHHHHHHHHHHHHH
Confidence 3447788999999999988876 345544433 3332333 3322 22 34432 4556666777889999
Q ss_pred CCCCEEEEccccCcC---CHHHHHHHHHHHHHHcCC--ce--EEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCC
Q psy15244 832 SGAQVLCLKDMAGLL---KPTAAKLLIGSFREKYPN--IL--IHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC 904 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l---~P~~~~~lv~~lr~~~p~--ip--i~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~t 904 (1427)
.|||.|-+.=-.|.+ .-..+++-|.++++..++ +. |+....++--.. ..+..|+++|||+|-++ .|++ +
T Consensus 138 ~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~-~A~~ia~eaGADfVKTS-TGf~--~ 213 (288)
T 3oa3_A 138 NGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEII-AGCVLSSLAGADYVKTS-TGFN--G 213 (288)
T ss_dssp TTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHH-HHHHHHHHTTCSEEECC-CSSS--S
T ss_pred cCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHH-HHHHHHHHcCCCEEEcC-CCCC--C
Confidence 999998866455653 336788889999988632 23 233333433333 34667889999999999 6765 5
Q ss_pred CCCcHHHHHHHHH
Q psy15244 905 SQPAMGTIVSCLE 917 (1427)
Q Consensus 905 gn~~lE~vv~~L~ 917 (1427)
+.+.++++..+.+
T Consensus 214 ~GAT~edv~lmr~ 226 (288)
T 3oa3_A 214 PGASIENVSLMSA 226 (288)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6777777655444
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.44 E-value=7.4 Score=44.39 Aligned_cols=201 Identities=8% Similarity=0.037 Sum_probs=110.4
Q ss_pred EeecC----cccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCC
Q psy15244 661 LTDTT----FRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNI 733 (1427)
Q Consensus 661 i~DtT----lRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~ 733 (1427)
.+.+| |+||.+. .+.+..++.|..+-+ .|.+.|++++|+..-. .+..++|+-.+-+.. .++
T Consensus 18 riNvTg~~sf~~~~~~-----~~~~~a~~~A~~~v~--~GAdiIDIg~g~~~v~-----~~eem~rvv~~i~~~~~~~~v 85 (300)
T 3k13_A 18 RCNVAGSRKFLRLVNE-----KKYDEALSIARQQVE--DGALVIDVNMDDGLLD-----ARTEMTTFLNLIMSEPEIARV 85 (300)
T ss_dssp EEETTTCHHHHHHHHT-----TCHHHHHHHHHHHHH--TTCSEEEEECCCTTSC-----HHHHHHHHHHHHHTCHHHHTS
T ss_pred eccCCCCHHHHHHHhc-----CCHHHHHHHHHHHHH--CCCCEEEECCCCCCCC-----HHHHHHHHHHHHHHhhhcCCC
Confidence 45666 7888653 456889999998887 7999999998764210 112233433222221 345
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHh--cCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQ--AGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~--~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
+++.=. + .-+.+++|.+ .|.+++.=......=+++....+.+++.|. -+ +.+++.+ =+.
T Consensus 86 pisIDT----------~----~~~V~eaaL~~~~Ga~iINdIs~~~~d~~~~~~~~l~a~~ga---~v-V~mh~d~-~G~ 146 (300)
T 3k13_A 86 PVMIDS----------S----KWEVIEAGLKCLQGKSIVNSISLKEGEEVFLEHARIIKQYGA---AT-VVMAFDE-KGQ 146 (300)
T ss_dssp CEEEEC----------S----CHHHHHHHHHHCSSCCEEEEECSTTCHHHHHHHHHHHHHHTC---EE-EEESEET-TEE
T ss_pred eEEEeC----------C----CHHHHHHHHHhcCCCCEEEeCCcccCChhHHHHHHHHHHhCC---eE-EEEeeCC-CCC
Confidence 544321 2 2344677777 799887655444434466677888888887 32 2233310 022
Q ss_pred CCCCCCCHHHHHHHHHHH-HHCCCC--EEEEccc-cC-cCC-HHH----HHHH---HHHHHHHcCCceEEEeecC-Ccch
Q psy15244 812 PNKKKYSLNYYEDLAKQL-VESGAQ--VLCLKDM-AG-LLK-PTA----AKLL---IGSFREKYPNILIHVHTHD-MAGT 877 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l-~~~Gad--~i~i~Dt-~G-~l~-P~~----~~~l---v~~lr~~~p~ipi~~H~Hn-d~Gl 877 (1427)
|..-.-..+...++.+.+ .++|+. .|.| |. .| ..+ ..+ ..++ ++.+|+.+|++|+-+=..| .+|+
T Consensus 147 p~t~~~~~~i~~r~~~~~~~~~Gi~~~~Iil-DPgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfgl 225 (300)
T 3k13_A 147 ADTAARKIEVCERAYRLLVDKVGFNPHDIIF-DPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSF 225 (300)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTCCCGGGEEE-ECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eCCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccC
Confidence 321001123333444444 678983 4443 32 22 222 222 3344 4556667889997665544 3454
Q ss_pred H----------HHHHHHHHHhcCCEE
Q psy15244 878 G----------VATTLACVKAGADIV 893 (1427)
Q Consensus 878 A----------~An~laAi~AGad~V 893 (1427)
- .+-...|+++|.|..
T Consensus 226 p~~~~~R~~~n~~fl~~ai~~Gld~~ 251 (300)
T 3k13_A 226 RGNNYIREAMHAVFLYHAIQQGMDMG 251 (300)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcchhHHHHHHHHHHHHHcCCCEE
Confidence 2 123447899999853
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=88.34 E-value=8.1 Score=43.33 Aligned_cols=144 Identities=10% Similarity=0.097 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChH-------H--------------HHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSV-------P--------------NLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN 813 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~-------~--------------~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~ 813 (1427)
..+.++...++|+|++.+-.+.||. + .+-..++.+|+.+.. .--..+.|
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~--~Pivlm~Y-------- 103 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPD--MPIGLLLY-------- 103 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CCEEEEEC--------
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC--CCEEEEec--------
Confidence 4556788888999999999888862 2 223445555654221 11112222
Q ss_pred CCCCCHHH---HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 814 KKKYSLNY---YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 814 ~~~~~~~~---~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
+++-| +.++++.+.++|+|.+.+.| +.|++..+++..+++. ++...+=+=.+.-. .......+.+-
T Consensus 104 ---~npv~~~g~e~f~~~~~~aGvdgvii~D----lp~ee~~~~~~~~~~~--gl~~i~liaP~t~~--eri~~i~~~~~ 172 (267)
T 3vnd_A 104 ---ANLVFANGIDEFYTKAQAAGVDSVLIAD----VPVEESAPFSKAAKAH--GIAPIFIAPPNADA--DTLKMVSEQGE 172 (267)
T ss_dssp ---HHHHHHHCHHHHHHHHHHHTCCEEEETT----SCGGGCHHHHHHHHHT--TCEEECEECTTCCH--HHHHHHHHHCC
T ss_pred ---CcHHHHhhHHHHHHHHHHcCCCEEEeCC----CCHhhHHHHHHHHHHc--CCeEEEEECCCCCH--HHHHHHHHhCC
Confidence 23322 26678888999999999998 6678889999998876 45544333333332 23333444455
Q ss_pred CEEEe-cccc-CCCCCCC-CcHHHHHHHHHhC
Q psy15244 891 DIVDV-AADS-MSGICSQ-PAMGTIVSCLENT 919 (1427)
Q Consensus 891 d~VD~-av~G-mG~~tgn-~~lE~vv~~L~~~ 919 (1427)
+.|-+ |+.| -|.+++. +.+.+++..++..
T Consensus 173 gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~ 204 (267)
T 3vnd_A 173 GYTYLLSRAGVTGTESKAGEPIENILTQLAEF 204 (267)
T ss_dssp SCEEESCCCCCC--------CHHHHHHHHHTT
T ss_pred CcEEEEecCCCCCCccCCcHHHHHHHHHHHHh
Confidence 56666 6666 3444433 3467777777754
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.30 E-value=12 Score=41.81 Aligned_cols=142 Identities=11% Similarity=0.100 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCChH---------------------HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCC
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNSV---------------------PNLVKGMDAVQQV--TGGSTIVEATICYAGDLT 810 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd~---------------------~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~ 810 (1427)
...+.++...++|+|.+-+-.+.+|- +.+-..++.+++. .. -+ +.++
T Consensus 32 ~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~---Pi---~~m~---- 101 (262)
T 2ekc_A 32 TSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDI---PF---LLMT---- 101 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTS---CE---EEEC----
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC---CE---EEEe----
Confidence 34556777788999999999888851 1233446666655 33 11 1122
Q ss_pred CCCCCCCCHHHH---HHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHHHHHHHH
Q psy15244 811 NPNKKKYSLNYY---EDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 811 ~p~~~~~~~~~~---~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~An~laAi 886 (1427)
.+++-+- .+.++.+.++|+|.+.+.| +.++++.++++.+++. ++. |.+-.+++.. .-...+++.
T Consensus 102 -----y~n~v~~~g~~~f~~~~~~aG~dgvii~d----l~~ee~~~~~~~~~~~--gl~~i~l~~p~t~~-~rl~~ia~~ 169 (262)
T 2ekc_A 102 -----YYNPIFRIGLEKFCRLSREKGIDGFIVPD----LPPEEAEELKAVMKKY--VLSFVPLGAPTSTR-KRIKLICEA 169 (262)
T ss_dssp -----CHHHHHHHCHHHHHHHHHHTTCCEEECTT----CCHHHHHHHHHHHHHT--TCEECCEECTTCCH-HHHHHHHHH
T ss_pred -----cCcHHHHhhHHHHHHHHHHcCCCEEEECC----CCHHHHHHHHHHHHHc--CCcEEEEeCCCCCH-HHHHHHHHh
Confidence 1222121 4677888999999999988 4468888899888875 344 3344454432 222233333
Q ss_pred HhcCCEEEeccccC-CCCCCCC--cHHHHHHHHHh
Q psy15244 887 KAGADIVDVAADSM-SGICSQP--AMGTIVSCLEN 918 (1427)
Q Consensus 887 ~AGad~VD~av~Gm-G~~tgn~--~lE~vv~~L~~ 918 (1427)
..|.-+.. ++.|. |.+++.+ ++.+++..++.
T Consensus 170 a~gfiy~v-s~~g~TG~~~~~~~~~~~~~v~~vr~ 203 (262)
T 2ekc_A 170 ADEMTYFV-SVTGTTGAREKLPYERIKKKVEEYRE 203 (262)
T ss_dssp CSSCEEEE-SSCC---------CHHHHHHHHHHHH
T ss_pred CCCCEEEE-ecCCccCCCCCcCcccHHHHHHHHHh
Confidence 34543222 44433 3333332 24456666664
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=88.18 E-value=7.9 Score=42.64 Aligned_cols=178 Identities=12% Similarity=0.132 Sum_probs=103.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCC--ceeeeecccccccc--cCCCcc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNI--PFQMILRGNSLVGY--SNYSPA 753 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~--~~qml~Rg~n~vgy--~~~~~n 753 (1427)
.+.+|+.++++...+ -|+.++-+..+. ++..++.+.++ ++.. .+|| ...+..
T Consensus 40 ~t~~~i~~lc~eA~~--~~~~aVcV~p~~----------------v~~a~~~L~~s~v~v~t------VigFP~G~~~~~ 95 (239)
T 3ngj_A 40 ATEEQIRKLCSEAAE--YKFASVCVNPTW----------------VPLCAELLKGTGVKVCT------VIGFPLGATPSE 95 (239)
T ss_dssp CCHHHHHHHHHHHHH--HTCSEEEECGGG----------------HHHHHHHHTTSSCEEEE------EESTTTCCSCHH
T ss_pred CCHHHHHHHHHHHHh--cCCcEEEECHHH----------------HHHHHHHhCCCCCeEEE------EeccCCCCCchH
Confidence 567888888887776 488888775321 22233333333 3332 3455 334555
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~ 827 (1427)
+.-.-++.|++.|.|.+-+......+ +.+..-+..++++ +. ..+-+- -=++ ..+.+.+...++
T Consensus 96 ~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~--~~lKVI-lEt~--------~Lt~eei~~a~~ 164 (239)
T 3ngj_A 96 VKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGK--ALTKVI-IECC--------YLTNEEKVEVCK 164 (239)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTT--SEEEEE-CCGG--------GSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcC--CceEEE-EecC--------CCCHHHHHHHHH
Confidence 55556888999999999888776532 3333333333332 22 133332 1121 357888999999
Q ss_pred HHHHCCCCEEEEcc--ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 828 QLVESGAQVLCLKD--MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 828 ~l~~~Gad~i~i~D--t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+.++|||.|--.- +.|-.++.++..+-+.+.. .++|-.=. --- ....+++-+++||+.|=+|
T Consensus 165 ia~~aGADfVKTSTGf~~ggAt~~dv~lmr~~vg~---~v~VKasG--GIr-t~~da~~~i~aGA~riGtS 229 (239)
T 3ngj_A 165 RCVAAGAEYVKTSTGFGTHGATPEDVKLMKDTVGD---KALVKAAG--GIR-TFDDAMKMINNGASRIGAS 229 (239)
T ss_dssp HHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHGG---GSEEEEES--SCC-SHHHHHHHHHTTEEEEEES
T ss_pred HHHHHCcCEEECCCCCCCCCCCHHHHHHHHHhhCC---CceEEEeC--CCC-CHHHHHHHHHhcccceecc
Confidence 99999999876441 1345667766654443322 23332211 000 1267788889999988554
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=88.17 E-value=4.4 Score=46.13 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=102.2
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEcc-cc--C---cCCHHHHHHHHHHHHHHcC-CceEEE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKD-MA--G---LLKPTAAKLLIGSFREKYP-NILIHV 869 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~D-t~--G---~l~P~~~~~lv~~lr~~~p-~ipi~~ 869 (1427)
.+.+-+..|-|=++ |.++| +.+..++.++++.+.|||+|-|.= ++ | +-..+++.+++..++.... ++||.+
T Consensus 24 ~iMgilNvTPDSFs-dgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiSI 102 (294)
T 2y5s_A 24 LVMGILNATPDSFS-DGGRFLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLSI 102 (294)
T ss_dssp EEEEEEECCC-----------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred eEEEEEeCCCCCCC-CCCCcCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 55666676654211 34555 789999999999999999998763 11 2 2224556666655554321 789988
Q ss_pred eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------C-CCC-------CCC-C--hhhHHH
Q psy15244 870 HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------T-DKR-------CGI-D--LHDVCD 932 (1427)
Q Consensus 870 H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~-g~~-------tgi-d--l~~L~~ 932 (1427)
-+=+ ...+.+|+++|+++|+-...+ . -+.+-.+++-... . |.. +.+ | .+.+..
T Consensus 103 DT~~-----~~Va~aAl~aGa~iINdVsg~----~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~ 172 (294)
T 2y5s_A 103 DTYK-----PAVMRAALAAGADLINDIWGF----R-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDF 172 (294)
T ss_dssp ECCC-----HHHHHHHHHHTCSEEEETTTT----C-STTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHH
T ss_pred ECCC-----HHHHHHHHHcCCCEEEECCCC----C-chHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHH
Confidence 6554 455678999999999754332 1 3444443322110 0 111 111 1 233555
Q ss_pred HHHHHHHHhCCCCCCCCcccccchhhhhHH-HHHHHHHHhhhhcC-----CCCCCCCCcCcccEEEecCC
Q psy15244 933 YSSYWRKVRELYAPAHNLLWRCGIDLHDVC-DYSSYWRKVRELYA-----PFECTDLKAASSEAYLYEIP 996 (1427)
Q Consensus 933 l~~~v~~~~g~~~~~~kpivG~~~f~~~~~-~~~~~~~~~~~~Y~-----~f~~~~~~g~~~~v~~~~~p 996 (1427)
+.+.++.....-+++++=++--++.--+.. .|.-.+.+.-..+. .+.+|-+.|.++.-+++++-
T Consensus 173 l~~~i~~a~~~Gi~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~l~~~~~~~~g~Pvl~G~Srksfig~l~ 242 (294)
T 2y5s_A 173 LAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAVI 242 (294)
T ss_dssp HHHHHHHHHHTTCCGGGEEEECCTTSSSCTTHHHHHHHHTGGGGSCBCTTSSBCCBEEECTTCHHHHTTT
T ss_pred HHHHHHHHHHcCCChhhEEEeCCCcccccchHHHHHHHHHHHHHHhccccCCCCCEEEEecccHHhhhhc
Confidence 666666665555665553332222222333 55555555444455 55557777777765555553
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.12 E-value=3.2 Score=45.42 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+++++.+-+ .|+..+|+. +-..+..+.++.+++.+|+..+ |...+ - ....
T Consensus 36 ~~~~~~~~~~al~~--gGv~~iel~----------~k~~~~~~~i~~l~~~~~~~~i-----gagtv-----l---~~d~ 90 (225)
T 1mxs_A 36 REEDILPLADALAA--GGIRTLEVT----------LRSQHGLKAIQVLREQRPELCV-----GAGTV-----L---DRSM 90 (225)
T ss_dssp CGGGHHHHHHHHHH--TTCCEEEEE----------SSSTHHHHHHHHHHHHCTTSEE-----EEECC-----C---SHHH
T ss_pred CHHHHHHHHHHHHH--CCCCEEEEe----------cCCccHHHHHHHHHHhCcccEE-----eeCeE-----e---eHHH
Confidence 44678899999988 799999985 2233445667888888875432 22111 1 2245
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.|.++|.|.++.- -.| ...++.++..|. ..-.. .+|+.. +.++.++|+|.|.
T Consensus 91 ~~~A~~aGAd~v~~p--~~d----~~v~~~~~~~g~---~~i~G-------------~~t~~e----~~~A~~~Gad~vk 144 (225)
T 1mxs_A 91 FAAVEAAGAQFVVTP--GIT----EDILEAGVDSEI---PLLPG-------------ISTPSE----IMMGYALGYRRFK 144 (225)
T ss_dssp HHHHHHHTCSSEECS--SCC----HHHHHHHHHCSS---CEECE-------------ECSHHH----HHHHHTTTCCEEE
T ss_pred HHHHHHCCCCEEEeC--CCC----HHHHHHHHHhCC---CEEEe-------------eCCHHH----HHHHHHCCCCEEE
Confidence 899999999998743 223 245566777776 22111 234333 3556689999998
Q ss_pred EccccCcCCHHH-H--HHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHH-hcCCEEE
Q psy15244 839 LKDMAGLLKPTA-A--KLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVK-AGADIVD 894 (1427)
Q Consensus 839 i~Dt~G~l~P~~-~--~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~-AGad~VD 894 (1427)
+ .|.. . .+.++.++..+|++|+-. +-|....|+-.-++ +|++.|=
T Consensus 145 ~-------FPa~~~~G~~~lk~i~~~~~~ipvva----iGGI~~~N~~~~l~~~Ga~~v~ 193 (225)
T 1mxs_A 145 L-------FPAEISGGVAAIKAFGGPFGDIRFCP----TGGVNPANVRNYMALPNVMCVG 193 (225)
T ss_dssp E-------TTHHHHTHHHHHHHHHTTTTTCEEEE----BSSCCTTTHHHHHHSTTBCCEE
T ss_pred E-------ccCccccCHHHHHHHHhhCCCCeEEE----ECCCCHHHHHHHHhccCCEEEE
Confidence 8 4432 2 477888888888888743 23555667777888 6888774
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=10 Score=42.29 Aligned_cols=195 Identities=9% Similarity=-0.017 Sum_probs=108.5
Q ss_pred EEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhC---CCCcee
Q psy15244 660 LLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELI---PNIPFQ 736 (1427)
Q Consensus 660 ~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~---p~~~~q 736 (1427)
.+|--.|.||.+ ..+.+..++.|..+-+ .|.+.|.++||+. ..++.|.++.+...+ .+++++
T Consensus 9 NvTpdsFsdgg~-----~~~~~~a~~~a~~~v~--~GAdiIDIg~g~~--------~v~~~ee~~rvv~~i~~~~~~pis 73 (262)
T 1f6y_A 9 NGMFGDIKRAIQ-----ERDPAPVQEWARRQEE--GGARALDLNVGPA--------VQDKVSAMEWLVEVTQEVSNLTLC 73 (262)
T ss_dssp BTTSHHHHHHHH-----HTCHHHHHHHHHHHHH--HTCSEEEEBCC------------CHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCCchhHHHhhh-----cCCHHHHHHHHHHHHH--CCCcEEEECCCCC--------CCChHHHHHHHHHHHHHhCCCeEE
Confidence 333345667754 2567888888888877 6999999999864 234555554443332 344443
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhc--CCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeecc-CCCCC
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQA--GIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGD-LTNPN 813 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~--Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d-~~~p~ 813 (1427)
.= .+- -+.+++|.++ |.+++.=.... -++++...+.+++.|. -+ +.+.-| -+.|.
T Consensus 74 ID----------T~~----~~v~~aAl~a~~Ga~iINdvs~~--~d~~~~~~~~~a~~~~---~v---vlmh~~~~G~p~ 131 (262)
T 1f6y_A 74 LD----------STN----IKAIEAGLKKCKNRAMINSTNAE--REKVEKLFPLAVEHGA---AL---IGLTMNKTGIPK 131 (262)
T ss_dssp EE----------CSC----HHHHHHHHHHCSSCEEEEEECSC--HHHHHHHHHHHHHTTC---EE---EEESCCSSCSCS
T ss_pred Ee----------CCC----HHHHHHHHhhCCCCCEEEECCCC--cccHHHHHHHHHHhCC---cE---EEEcCCCCCCCC
Confidence 32 122 2346677777 99888643333 2666677888888887 22 222210 12232
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC--EEEEcccc-C-cC-CHH---HHHHHHHHHHHHc-CCceEEEeecCCc-ch------
Q psy15244 814 KKKYSLNYYEDLAKQLVESGAQ--VLCLKDMA-G-LL-KPT---AAKLLIGSFREKY-PNILIHVHTHDMA-GT------ 877 (1427)
Q Consensus 814 ~~~~~~~~~~~~a~~l~~~Gad--~i~i~Dt~-G-~l-~P~---~~~~lv~~lr~~~-p~ipi~~H~Hnd~-Gl------ 877 (1427)
.-.-..+++.+.++.+.++|+. .|.| |.. | .. ... +.-+.++.+++.+ |+.|+-+=.+|-+ |+
T Consensus 132 t~~~~~~~~~~~~~~a~~~Gi~~~~Iil-DPg~g~~g~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srksfg~~~~~~l 210 (262)
T 1f6y_A 132 DSDTRLAFAMELVAAADEFGLPMEDLYI-DPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQNCQNRPLI 210 (262)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCGGGEEE-ECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGTTCSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcccEEE-eCCCCcCCCChHHHHHHHHHHHHHHHHhCCCCCEEEeecCCcCCCCHHHHH
Confidence 1112357778888889999986 4443 432 2 11 123 4444456666556 7889877655543 32
Q ss_pred HHHHHHHHHHhcCCE
Q psy15244 878 GVATTLACVKAGADI 892 (1427)
Q Consensus 878 A~An~laAi~AGad~ 892 (1427)
.-.-+..|+.+|++.
T Consensus 211 ~~t~~~~a~~~g~~~ 225 (262)
T 1f6y_A 211 NRTFLAMAMACGLMS 225 (262)
T ss_dssp HHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhCCe
Confidence 112234555666654
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=88.05 E-value=7.2 Score=43.60 Aligned_cols=200 Identities=10% Similarity=0.031 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee-eecccccccccCCCcchHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM-ILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm-l~Rg~n~vgy~~~~~nvv~~ 757 (1427)
+.+|+.+++....+ .|+.++=+-.| | ++... ..++.+-+ +..+.+..|. .+.+..-.
T Consensus 39 ~~~di~~~~~~a~~--~~~~av~v~~~--------------~--v~~~~--~~~~~liv~~~~~~~~~g~--~~~~~~~~ 96 (263)
T 1w8s_A 39 DSADPEYILRLARD--AGFDGVVFQRG--------------I--AEKYY--DGSVPLILKLNGKTTLYNG--EPVSVANC 96 (263)
T ss_dssp GGGCHHHHHHHHHH--HTCSEEEECHH--------------H--HHHHC--CSSSCEEEECEECCTTCCS--SCCCEESS
T ss_pred chhhHHHHHHHHHh--hCCCEEEECHH--------------H--HHHhh--cCCCcEEEEEeCCCCcCCC--CccchHHH
Confidence 56778888887777 58888865311 1 22222 44454322 3333333333 23334444
Q ss_pred HHHHHHhcCCCEEEEec--cCCh----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 758 FCRLASQAGIDIFRVFD--PLNS----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~--~~nd----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
.++.|++.|++.+-+-. .-.+ ++.+....+.+++.|. .+-. .||... .......+.+.....++.+.+
T Consensus 97 ~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~---~vIi-~~~~~G--~~~~~~~s~~~i~~a~~~a~~ 170 (263)
T 1w8s_A 97 SVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDL---PLVV-ESFPRG--GKVVNETAPEIVAYAARIALE 170 (263)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTC---CEEE-EECCCS--TTCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCC---eEEE-EeeCCC--CccccCCCHHHHHHHHHHHHH
Confidence 58899999999887665 3222 2345566666777777 3322 255420 000112377888888899999
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEee---cCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCc
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHT---HDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPA 908 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~---Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~ 908 (1427)
+|||.|... +.| .|+. ++.+++..+.+||-.=. .+|.--+++|.-.++++||+.+-+..+=+ ..++
T Consensus 171 ~GAD~vkt~-~~~--~~e~----~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~----~~~d 239 (263)
T 1w8s_A 171 LGADAMKIK-YTG--DPKT----FSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVW----QRRD 239 (263)
T ss_dssp HTCSEEEEE-CCS--SHHH----HHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHH----TSTT
T ss_pred cCCCEEEEc-CCC--CHHH----HHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhc----CCcC
Confidence 999998887 433 4444 44455555333653322 22667888899999999998554333222 2234
Q ss_pred HHHHHHHHH
Q psy15244 909 MGTIVSCLE 917 (1427)
Q Consensus 909 lE~vv~~L~ 917 (1427)
.+..+..|.
T Consensus 240 p~~~~~~l~ 248 (263)
T 1w8s_A 240 ALKFARALA 248 (263)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445554444
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=88.02 E-value=1.8 Score=50.64 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEE-eecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 820 NYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHV-HTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~-H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
+...+.++.+.++|+|.|.| |++. ..+..+.+.|+.+|+.+|+++|.. -. .....+..++++|||.|.+++
T Consensus 99 ~~~~e~~~~a~~aGvdvI~i-d~a~-G~~~~~~e~I~~ir~~~~~~~Vi~G~V-----~T~e~A~~a~~aGaD~I~Vg~ 170 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCV-DVAH-AHAKYVGKTLKSLRQLLGSRCIMAGNV-----ATYAGADYLASCGADIIKAGI 170 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEE-ECSC-CSSHHHHHHHHHHHHHHTTCEEEEEEE-----CSHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEE-eCCC-CCcHhHHHHHHHHHHhcCCCeEEEcCc-----CCHHHHHHHHHcCCCEEEEcC
Confidence 45678899999999997776 5432 235567788999999988888876 22 235667899999999999853
|
| >2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.99 E-value=0.38 Score=51.01 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=37.3
Q ss_pred EEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE-----------------------------ecCCCeeCCCC
Q psy15244 1370 EVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF-----------------------------VEVGGQVAQND 1420 (1427)
Q Consensus 1370 ~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~-----------------------------v~~G~~V~~g~ 1420 (1427)
.++|++|+.|++||.|+.=. +|.|..+|+|.+.. |+.|+.|.+||
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~~Gd 95 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL 95 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEECTTS
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEcCCC
Confidence 46899999999999999755 78888888875433 66788888887
Q ss_pred EEE
Q psy15244 1421 LVV 1423 (1427)
Q Consensus 1421 ~L~ 1423 (1427)
+|+
T Consensus 96 vLA 98 (193)
T 2xha_A 96 PLS 98 (193)
T ss_dssp BSS
T ss_pred EEe
Confidence 763
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=87.96 E-value=3.9 Score=45.81 Aligned_cols=188 Identities=13% Similarity=0.120 Sum_probs=95.3
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccc------cCcCCHHHHHHHHHHHHHHc-CCceEEE
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKDM------AGLLKPTAAKLLIGSFREKY-PNILIHV 869 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~Dt------~G~l~P~~~~~lv~~lr~~~-p~ipi~~ 869 (1427)
.+.+-+..|-|=++ |.++| +.+..++-++++.+.|||+|-|.=- .-+-.-++..+++..++.-. ++++|.+
T Consensus 8 ~iMGIlNvTPDSFs-DGG~~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSI 86 (270)
T 4hb7_A 8 KIMGILNVTPDSFS-DGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISV 86 (270)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred eEEEEEeCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEE
Confidence 56666776654222 34555 6788999999999999999987311 01111244555544444321 4899998
Q ss_pred eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh------CCCCCCCC-h--hhHHHHHHHHHHH
Q psy15244 870 HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN------TDKRCGID-L--HDVCDYSSYWRKV 940 (1427)
Q Consensus 870 H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~------~g~~tgid-l--~~L~~l~~~v~~~ 940 (1427)
-|-+ ...+-+|+++||++|+=-. ++...|.+-.+++...- +...+.++ . +-...+.+.++..
T Consensus 87 DT~~-----~~Va~~al~aGa~iINDVs----~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a 157 (270)
T 4hb7_A 87 DTFR-----SEVAEACLKLGVDMINDQW----AGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQA 157 (270)
T ss_dssp ECSC-----HHHHHHHHHHTCCEEEETT----TTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ECCC-----HHHHHHHHHhccceecccc----ccccchhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHH
Confidence 6644 3455799999999987533 33445777777765531 11112111 1 1222233333344
Q ss_pred hCCCCCCCCcccccchhhhhHHHHHHHHHHhhhhcCCCCCCCCCcCcccEEEecC
Q psy15244 941 RELYAPAHNLLWRCGIDLHDVCDYSSYWRKVRELYAPFECTDLKAASSEAYLYEI 995 (1427)
Q Consensus 941 ~g~~~~~~kpivG~~~f~~~~~~~~~~~~~~~~~Y~~f~~~~~~g~~~~v~~~~~ 995 (1427)
...-++.++=++--++==.+...|+-.+.+.-..+..|.+|-+.|.++.-+++++
T Consensus 158 ~~aGI~~~~IilDPGiGFgKt~~~N~~ll~~l~~~~~lg~PvLvG~SRKsfig~~ 212 (270)
T 4hb7_A 158 KIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEM 212 (270)
T ss_dssp HHTTCCGGGEEEECCTTSSCCHHHHHHHHTCHHHHHTTCSCBEECCTTSHHHHHH
T ss_pred HHcCCCCceEEEeCCCCcccccccHHHHHhhHHHHhcCCCCEEEEecHHHHHHHH
Confidence 3334444442221111001233444444444445555655666666655544443
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=87.85 E-value=9.1 Score=44.04 Aligned_cols=130 Identities=8% Similarity=0.084 Sum_probs=84.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..++.+++.++++.+.+ .|+..|-+.||-- +++.+-.+-++.+++......+.+...|. ..
T Consensus 48 ~~ls~e~i~~~i~~~~~--~g~~~i~~tGGEP------ll~~~l~~li~~~~~~~~~~~i~i~TNG~-----------ll 108 (340)
T 1tv8_A 48 ELLTFDEMARIAKVYAE--LGVKKIRITGGEP------LMRRDLDVLIAKLNQIDGIEDIGLTTNGL-----------LL 108 (340)
T ss_dssp GSCCHHHHHHHHHHHHH--TTCCEEEEESSCG------GGSTTHHHHHHHHTTCTTCCEEEEEECST-----------TH
T ss_pred CCCCHHHHHHHHHHHHH--CCCCEEEEeCCCc------cchhhHHHHHHHHHhCCCCCeEEEEeCcc-----------ch
Confidence 45889999999999987 7999998888753 34444344445554432212455544442 12
Q ss_pred HHHHHHHHhcCCCEEEEecc-CC------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDP-LN------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYY 822 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~-~n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~ 822 (1427)
.+.++...++|++.+.|..- ++ .++.....++.++++|. .+.....+. + ..+.+.+
T Consensus 109 ~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~---~v~i~~vv~-----~---g~n~~ei 177 (340)
T 1tv8_A 109 KKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL---NVKVNVVIQ-----K---GINDDQI 177 (340)
T ss_dssp HHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC---EEEEEEEEC-----T---TTTGGGH
T ss_pred HHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC---CEEEEEEEe-----C---CCCHHHH
Confidence 33577777899998887543 33 24566678888888887 444433322 2 2356678
Q ss_pred HHHHHHHHHCCCC
Q psy15244 823 EDLAKQLVESGAQ 835 (1427)
Q Consensus 823 ~~~a~~l~~~Gad 835 (1427)
.++++.+.+.|++
T Consensus 178 ~~~~~~~~~~g~~ 190 (340)
T 1tv8_A 178 IPMLEYFKDKHIE 190 (340)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCe
Confidence 8888888999987
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=2.9 Score=42.27 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=65.9
Q ss_pred CCEEEEEcC----CHHHHHHHHHHHHcCCEEEEEecCCCccC---cccc------ccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 57 MEKILIANR----SEVAIRVARACNEMGIKSVGIYSEQDKFS---AHRT------KVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 57 ~kkVLIagr----Geia~riiraa~elGi~~vav~s~~d~~s---~~~~------~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
.++|.|+|. |-.+.++++.+++.|++++.+....+... .+.. -.|-++..- +. .....++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~v----p~---~~~~~vv 94 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFV----KP---KLTMEYV 94 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECS----CH---HHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEe----CH---HHHHHHH
Confidence 458999997 57889999999999999777754432110 0000 123222211 10 1245666
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVL 166 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai 166 (1427)
+-|.+.++.+|+-..|+. ..++++.+++.|+.++||.---+
T Consensus 95 ~~~~~~gi~~i~~~~g~~--~~~l~~~a~~~Gi~vvGpnc~gv 135 (144)
T 2d59_A 95 EQAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVANRCMMR 135 (144)
T ss_dssp HHHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEESCCHHH
T ss_pred HHHHHcCCCEEEECCCch--HHHHHHHHHHcCCEEEcCCchhh
Confidence 667778888888776653 56789999999999999865433
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=87.74 E-value=1.5 Score=47.28 Aligned_cols=155 Identities=13% Similarity=0.041 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHH
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFC 759 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v 759 (1427)
.++.+++++.+.+ .|+..||+. +-..+..+.++.+++ ++.. .|.+. .-+ ...+
T Consensus 24 ~~~~~~~~~~l~~--gGv~~iel~----------~k~~~~~~~i~~~~~--~~~~-----~gag~-----vl~---~d~~ 76 (207)
T 2yw3_A 24 GEDLLGLARVLEE--EGVGALEIT----------LRTEKGLEALKALRK--SGLL-----LGAGT-----VRS---PKEA 76 (207)
T ss_dssp CCCHHHHHHHHHH--TTCCEEEEE----------CSSTHHHHHHHHHTT--SSCE-----EEEES-----CCS---HHHH
T ss_pred HHHHHHHHHHHHH--cCCCEEEEe----------CCChHHHHHHHHHhC--CCCE-----EEeCe-----Eee---HHHH
Confidence 3557788888887 799999985 223344455666666 4332 22221 112 2458
Q ss_pred HHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q psy15244 760 RLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL 839 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i 839 (1427)
+.|.++|.|.++.- -.|. ..++.++..|. ..-.. .+|++. +.++.++|+|.|.+
T Consensus 77 ~~A~~~GAd~v~~~--~~d~----~v~~~~~~~g~---~~i~G-------------~~t~~e----~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 77 EAALEAGAAFLVSP--GLLE----EVAALAQARGV---PYLPG-------------VLTPTE----VERALALGLSALKF 130 (207)
T ss_dssp HHHHHHTCSEEEES--SCCH----HHHHHHHHHTC---CEEEE-------------ECSHHH----HHHHHHTTCCEEEE
T ss_pred HHHHHcCCCEEEcC--CCCH----HHHHHHHHhCC---CEEec-------------CCCHHH----HHHHHHCCCCEEEE
Confidence 99999999998644 2332 45566777777 22111 133333 34556789999988
Q ss_pred ccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 840 KDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 840 ~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
-= ..+..-.+.++.++..+|++|+-. .-|....|+-+-+++|++.|-+
T Consensus 131 fp----a~~~gG~~~lk~l~~~~~~ipvva----iGGI~~~n~~~~l~aGa~~vav 178 (207)
T 2yw3_A 131 FP----AEPFQGVRVLRAYAEVFPEVRFLP----TGGIKEEHLPHYAALPNLLAVG 178 (207)
T ss_dssp TT----TTTTTHHHHHHHHHHHCTTCEEEE----BSSCCGGGHHHHHTCSSBSCEE
T ss_pred ec----CccccCHHHHHHHHhhCCCCcEEE----eCCCCHHHHHHHHhCCCcEEEE
Confidence 21 111102367889998888888753 2355567888899999987644
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=87.71 E-value=2.1 Score=46.51 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCCCEEEEEc-CCHHHHHHHHHHHHcC-CEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCC
Q psy15244 55 KTMEKILIAN-RSEVAIRVARACNEMG-IKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVD 132 (1427)
Q Consensus 55 ~~~kkVLIag-rGeia~riiraa~elG-i~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vD 132 (1427)
.+|++|||.| .|.++..+++.+.+.| ++++++..+++..... .......+ ..+..|.+.+.++.+ ++|
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--~~~~~~~~------~~Dl~d~~~~~~~~~--~~D 90 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--YPTNSQII------MGDVLNHAALKQAMQ--GQD 90 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--CCTTEEEE------ECCTTCHHHHHHHHT--TCS
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--ccCCcEEE------EecCCCHHHHHHHhc--CCC
Confidence 4578999999 7999999999999999 8888776554432111 11111111 123456777777766 589
Q ss_pred EEEeCCC
Q psy15244 133 AIHPGYG 139 (1427)
Q Consensus 133 aI~pg~g 139 (1427)
.|+-..+
T Consensus 91 ~vv~~a~ 97 (236)
T 3qvo_A 91 IVYANLT 97 (236)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 8885544
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=87.69 E-value=8.3 Score=44.66 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=85.5
Q ss_pred HHHHHH---HHHhcCCCEEEEeccC------------C------------hHHHHHHHHHHHHHh-cCCCcEEEEEEEee
Q psy15244 755 VGAFCR---LASQAGIDIFRVFDPL------------N------------SVPNLVKGMDAVQQV-TGGSTIVEATICYA 806 (1427)
Q Consensus 755 v~~~v~---~a~~~Gid~~rif~~~------------n------------d~~~~~~~i~~a~~~-G~~~~~v~~~i~~t 806 (1427)
++.|++ +|.++|.|.|.|-.+. | ..+-+.+.+++++++ .. .+.+-|+-.
T Consensus 143 i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~---pv~vris~~ 219 (338)
T 1z41_A 143 VQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDG---PLFVRVSAS 219 (338)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCS---CEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCC---cEEEEecCc
Confidence 445544 4567899999887643 1 123456677777765 33 333333322
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccC--c---CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH
Q psy15244 807 GDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAG--L---LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT 881 (1427)
Q Consensus 807 ~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G--~---l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An 881 (1427)
|+. ....+.+...++++.++++|+|.|.+.+..- . ..|..-.++++.+|+.+ ++||-.-.--+ ....
T Consensus 220 -~~~---~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~---s~~~ 291 (338)
T 1z41_A 220 -DYT---DKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-DMATGAVGMIT---DGSM 291 (338)
T ss_dssp -CCS---TTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCC---SHHH
T ss_pred -ccC---CCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC-CCCEEEECCCC---CHHH
Confidence 111 1257888999999999999999999876321 1 12222356788899988 88876533221 2567
Q ss_pred HHHHHHhc-CCEEEeccccC
Q psy15244 882 TLACVKAG-ADIVDVAADSM 900 (1427)
Q Consensus 882 ~laAi~AG-ad~VD~av~Gm 900 (1427)
+.+++++| ||.|-..-.-+
T Consensus 292 a~~~l~~G~aD~V~iGR~~i 311 (338)
T 1z41_A 292 AEEILQNGRADLIFIGRELL 311 (338)
T ss_dssp HHHHHHTTSCSEEEECHHHH
T ss_pred HHHHHHcCCceEEeecHHHH
Confidence 78889999 99986554333
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=87.68 E-value=5.1 Score=45.55 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=112.6
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CCcee
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NIPFQ 736 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~~~q 736 (1427)
+.+|--+|=||.+. ++.+..++.|..+-+ .|.+.|+++|-+|-..+-.--.+..|+|+..+-+.+. +++++
T Consensus 29 lNvTPDSFsdgg~~-----~~~~~a~~~a~~~v~--~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiS 101 (294)
T 2y5s_A 29 LNATPDSFSDGGRF-----LARDDALRRAERMIA--EGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLS 101 (294)
T ss_dssp EECCC---------------CTTHHHHHHHHHHH--TTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred EeCCCCCCCCCCCc-----CCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 34454557888763 456888888888877 7999999998544221111112344666543333332 45544
Q ss_pred eeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC--
Q psy15244 737 MILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK-- 814 (1427)
Q Consensus 737 ml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~-- 814 (1427)
.= .+- -+.+++|.++|.++|.=....+ .+ ...+.+++.|. -+. .+.+.| .|..
T Consensus 102 ID----------T~~----~~Va~aAl~aGa~iINdVsg~~-d~---~m~~~~a~~~~---~vV-lmh~~G---~p~tm~ 156 (294)
T 2y5s_A 102 ID----------TYK----PAVMRAALAAGADLINDIWGFR-QP---GAIDAVRDGNS---GLC-AMHMLG---EPQTMQ 156 (294)
T ss_dssp EE----------CCC----HHHHHHHHHHTCSEEEETTTTC-ST---THHHHHSSSSC---EEE-EECCCE---ETTTTE
T ss_pred EE----------CCC----HHHHHHHHHcCCCEEEECCCCC-ch---HHHHHHHHhCC---CEE-EECCCC---CCcccc
Confidence 31 122 3346778888999987666655 22 34556677776 221 122221 2321
Q ss_pred ---CCCC------HHHHHHHHHHHHHCCCC--EEEEccc-cCcC-CH-HHHHHHHHHHHHH------cCCceEEEeecC-
Q psy15244 815 ---KKYS------LNYYEDLAKQLVESGAQ--VLCLKDM-AGLL-KP-TAAKLLIGSFREK------YPNILIHVHTHD- 873 (1427)
Q Consensus 815 ---~~~~------~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l-~P-~~~~~lv~~lr~~------~p~ipi~~H~Hn- 873 (1427)
..|+ .+++.+.++.+.++|+. .|.| |. .|.. +. ++-.++++.+++- .++.|+-+=.-|
T Consensus 157 ~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPG~Gf~kt~~~~n~~ll~~l~~l~~~~~~~~g~Pvl~G~Srk 235 (294)
T 2y5s_A 157 VGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICV-DPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRK 235 (294)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ECCTTSSSCTTHHHHHHHHTGGGGSCBCTTSSBCCBEEECTTC
T ss_pred ccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCcccccchHHHHHHHHHHHHHHhccccCCCCCEEEEeccc
Confidence 1233 78888999999999987 4444 43 1222 34 5667777777642 346776543322
Q ss_pred ---------Cc-----chHHHHHHHHHHhcCCEEEec
Q psy15244 874 ---------MA-----GTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 874 ---------d~-----GlA~An~laAi~AGad~VD~a 896 (1427)
+. +.-.|.+..|+++||++|.+.
T Consensus 236 sfig~l~g~~~~~~R~~~t~a~~~~a~~~Ga~IvrvH 272 (294)
T 2y5s_A 236 SMLGAVIGGKPPLERVAASVAAALCAVERGAAIVRVH 272 (294)
T ss_dssp HHHHTTTTSCCGGGCHHHHHHHHHHHHHTTCSEEEES
T ss_pred HHhhhhcCCCchhhhhHHHHHHHHHHHHcCCcEEEcC
Confidence 11 234556668889999998775
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=87.62 E-value=2.7 Score=47.94 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cccCcCCHHHHHHHHHHHH---HHcCCceEEEeecCCcchHHHHHHHHHH--hcC
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLK-DMAGLLKPTAAKLLIGSFR---EKYPNILIHVHTHDMAGTGVATTLACVK--AGA 890 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~-Dt~G~l~P~~~~~lv~~lr---~~~p~ipi~~H~Hnd~GlA~An~laAi~--AGa 890 (1427)
.+.+..++.+++.++.|||+|-|. +...+-.++++.+++..++ +.. ++||.+-+-+ ...+-+|++ +|+
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~~-~vpisIDT~~-----~~V~eaaL~~~~Ga 107 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIA-RVPVMIDSSK-----WEVIEAGLKCLQGK 107 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCCTTSCHHHHHHHHHHHHHTCHHHH-TSCEEEECSC-----HHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhhhcC-CCeEEEeCCC-----HHHHHHHHHhcCCC
Confidence 578999999999999999998886 4444445577888888887 444 8999997754 455678888 799
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCC----------CCCChhhHHHHHHHHHHH--hCCCCCCCCccc
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKR----------CGIDLHDVCDYSSYWRKV--RELYAPAHNLLW 952 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~----------tgidl~~L~~l~~~v~~~--~g~~~~~~kpiv 952 (1427)
++|+--. +..+.+.++.++...+.+|.. ..-+.+.-.++++.+.+. ...-+++++-++
T Consensus 108 ~iINdIs----~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~Iil 177 (300)
T 3k13_A 108 SIVNSIS----LKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIF 177 (300)
T ss_dssp CEEEEEC----STTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEE
T ss_pred CEEEeCC----cccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 9986543 334456556666666554321 112355556666666555 344555665433
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=5.3 Score=44.52 Aligned_cols=150 Identities=16% Similarity=0.067 Sum_probs=97.0
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
...+++.+++|.+.|+..+-| ..+++....+ ..+..+. .+...+ +.|.. ..+.+--+.-++++.+
T Consensus 58 ~~~I~~lc~eA~~~~~aaVCV--~p~~V~~a~~---~L~gs~v---~v~tVi------gFP~G-~~~~~~Kv~Ea~~Ai~ 122 (260)
T 3r12_A 58 PDDIKKLCLEARENRFHGVCV--NPCYVKLARE---ELEGTDV---KVVTVV------GFPLG-ANETRTKAHEAIFAVE 122 (260)
T ss_dssp HHHHHHHHHHHHHTTCSEEEE--CGGGHHHHHH---HHTTSCC---EEEEEE------STTTC-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEE--CHHHHHHHHH---HhcCCCC---eEEEEe------cCCCC-CCcHHHHHHHHHHHHH
Confidence 344777899999999988766 4455554433 3332333 332222 34533 4566666777888889
Q ss_pred CCCCEEEEccccCcC---CHHHHHHHHHHHHHHcCCceE----EEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCC
Q psy15244 832 SGAQVLCLKDMAGLL---KPTAAKLLIGSFREKYPNILI----HVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC 904 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l---~P~~~~~lv~~lr~~~p~ipi----~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~t 904 (1427)
.|||.|-+.=-.|.+ .-..+.+-+.++++..++.++ +....++--. ...+..|.++|||+|-|+ .|++ +
T Consensus 123 ~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei-~~A~~ia~eaGADfVKTS-TGf~--~ 198 (260)
T 3r12_A 123 SGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEK-IAACVISKLAGAHFVKTS-TGFG--T 198 (260)
T ss_dssp HTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHH-HHHHHHHHHTTCSEEECC-CSSS--S
T ss_pred cCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHH-HHHHHHHHHhCcCEEEcC-CCCC--C
Confidence 999998876566664 446788888899888654442 2233333333 344567889999999999 5554 5
Q ss_pred CCCcHHHHHHHHHhCC
Q psy15244 905 SQPAMGTIVSCLENTD 920 (1427)
Q Consensus 905 gn~~lE~vv~~L~~~g 920 (1427)
+.+.+|++-.+.+..|
T Consensus 199 ~GAT~edV~lm~~~vg 214 (260)
T 3r12_A 199 GGATAEDVHLMKWIVG 214 (260)
T ss_dssp CCCCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 6788888776666444
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.4 Score=53.30 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEE
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+-++.||+..|+.++-.-+--. .| ..+++.++++|.|.+.+-.-.. +.+.+.++.+|+.|. .+.
T Consensus 75 ~~v~~lr~~~p~~~ldvHLmv~-------~p----~~~i~~~~~aGAd~itvH~Ea~--~~~~~~i~~ir~~G~---k~G 138 (246)
T 3inp_A 75 MVLKALRDYGITAGMDVHLMVK-------PV----DALIESFAKAGATSIVFHPEAS--EHIDRSLQLIKSFGI---QAG 138 (246)
T ss_dssp HHHHHHHHHTCCSCEEEEEECS-------SC----HHHHHHHHHHTCSEEEECGGGC--SCHHHHHHHHHTTTS---EEE
T ss_pred HHHHHHHHhCCCCeEEEEEeeC-------CH----HHHHHHHHHcCCCEEEEccccc--hhHHHHHHHHHHcCC---eEE
Confidence 5678889988888876644311 22 4478888899999988875443 357788899999998 665
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE----ccccCcCCHHHHHHHHHHHHHHc----CCceEEEeec
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL----KDMAGLLKPTAAKLLIGSFREKY----PNILIHVHTH 872 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i----~Dt~G~l~P~~~~~lv~~lr~~~----p~ipi~~H~H 872 (1427)
.++ +|. ++.+.+..+. + ++|.|.+ ....|...-....+-|+.+|+.. ++++|.+
T Consensus 139 val-------np~---Tp~e~l~~~l----~-~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~V--- 200 (246)
T 3inp_A 139 LAL-------NPA---TGIDCLKYVE----S-NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEI--- 200 (246)
T ss_dssp EEE-------CTT---CCSGGGTTTG----G-GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEE---
T ss_pred EEe-------cCC---CCHHHHHHHH----h-cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEE---
Confidence 543 342 2333332222 2 4676654 23334322123344466666543 3577776
Q ss_pred CCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 873 DMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 873 nd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
|-|....|.-.+++||||++=+. +.-.+.++.++.+..|+
T Consensus 201 -DGGI~~~ti~~~~~aGAD~~V~G----SaIf~a~dp~~~i~~l~ 240 (246)
T 3inp_A 201 -DGGVNPYNIAEIAVCGVNAFVAG----SAIFNSDSYKQTIDKMR 240 (246)
T ss_dssp -ESSCCTTTHHHHHTTTCCEEEES----HHHHTSSCHHHHHHHHH
T ss_pred -ECCcCHHHHHHHHHcCCCEEEEe----hHHhCCCCHHHHHHHHH
Confidence 45666778889999999987332 12234445555555544
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.04 E-value=5.8 Score=43.46 Aligned_cols=126 Identities=21% Similarity=0.344 Sum_probs=80.1
Q ss_pred CcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-CCCCCCCHHHHHHHHHHH
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-PNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-p~~~~~~~~~~~~~a~~l 829 (1427)
.+..+.+..+.+.+.|...+++ +..+. ++.+|+.-.- -+ ..++- .|+.+ +. ..++ +.+-++++
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~----~~~~~----i~~ir~~v~~--Pv-ig~~k-~~~~~~~~--~I~~--~~~~i~~~ 97 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRI----EGIEN----LRTVRPHLSV--PI-IGIIK-RDLTGSPV--RITP--YLQDVDAL 97 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEE----ESHHH----HHHHGGGCCS--CE-EEECB-CCCSSCCC--CBSC--SHHHHHHH
T ss_pred CcchHHHHHHHHHHCCCcEEEE----CCHHH----HHHHHHhcCC--CE-EEEEe-ecCCCCce--EeCc--cHHHHHHH
Confidence 3556777788888899999987 23333 3334433210 11 11111 11111 00 0111 23346678
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
.++|||.|.+ |++....|....++++.+++. ++.+..-+|+ ...+..|.++|+|+|=+++.|+
T Consensus 98 ~~aGad~I~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~ 160 (229)
T 3q58_A 98 AQAGADIIAF-DASFRSRPVDIDSLLTRIRLH--GLLAMADCST-----VNEGISCHQKGIEFIGTTLSGY 160 (229)
T ss_dssp HHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTS
T ss_pred HHcCCCEEEE-CccccCChHHHHHHHHHHHHC--CCEEEEecCC-----HHHHHHHHhCCCCEEEecCccC
Confidence 8899998855 787778898899999999864 6787777775 5667889999999996666665
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=86.91 E-value=5.1 Score=43.20 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=75.3
Q ss_pred chHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCC-CCCCCCCHHHHHHHHHHHH
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTN-PNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~-p~~~~~~~~~~~~~a~~l~ 830 (1427)
....+.++++.+.|.+.+++- ..+. ++.+++. +. -+.. +.-. |+.+ .-.-.-+. +.++.+.
T Consensus 23 ~~~~~~a~~~~~~Ga~~i~~~----~~~~----i~~i~~~~~~---pv~~-~~~~-~~~~~~~~i~~~~----~~i~~~~ 85 (223)
T 1y0e_A 23 FIMSKMALAAYEGGAVGIRAN----TKED----ILAIKETVDL---PVIG-IVKR-DYDHSDVFITATS----KEVDELI 85 (223)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE----SHHH----HHHHHHHCCS---CEEE-ECBC-CCTTCCCCBSCSH----HHHHHHH
T ss_pred ccHHHHHHHHHHCCCeeeccC----CHHH----HHHHHHhcCC---CEEe-eecc-CCCccccccCCcH----HHHHHHH
Confidence 445667788888999999873 2222 3434433 33 2211 1111 1100 00000122 3345667
Q ss_pred HCCCCEEEEccccCcCCH-HHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCC
Q psy15244 831 ESGAQVLCLKDMAGLLKP-TAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 831 ~~Gad~i~i~Dt~G~l~P-~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG 901 (1427)
++|+|.+.+- +.-...| ....++++.+|+.+|+.++..-+|+ ...+..+.++|+|.|-++..|..
T Consensus 86 ~~Gad~v~l~-~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t-----~~e~~~~~~~G~d~i~~~~~g~t 151 (223)
T 1y0e_A 86 ESQCEVIALD-ATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYT 151 (223)
T ss_dssp HHTCSEEEEE-CSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred hCCCCEEEEe-eecccCcccCHHHHHHHHHHhCCCceEEecCCC-----HHHHHHHHHcCCCEEEeCCCcCc
Confidence 8899988773 3333345 4567899999999888888877764 44567789999999976655543
|
| >3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=86.84 E-value=6.1 Score=44.88 Aligned_cols=198 Identities=8% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChH-------HHHHHHHHhCCCCceeeeecccccccc---cCCC
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPW-------ERLAELRELIPNIPFQMILRGNSLVGY---SNYS 751 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~-------erl~~lr~~~p~~~~qml~Rg~n~vgy---~~~~ 751 (1427)
....+.+.+.+ .|++.||++.. ..+|| +.++.+++.+....+....-.....+| ....
T Consensus 36 ~~~~~~~~a~~--~G~~~vEl~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~~ 103 (316)
T 3qxb_A 36 PDRLAGLVRDD--LGLEYVQYTYD----------LTDPWWPDIERDRRAIAYAKAFRKAGLTIESTFGGLASYTYNHFLA 103 (316)
T ss_dssp HHHHHHHHHHT--SCCCEEEEETT----------TSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTSCBTTC
T ss_pred HHHHHHHHHHH--cCCCEEEeecc----------ccCccccccchhhHHHHHHHHHHHcCCeEEEeeccccccccccCCC
Q ss_pred cc---------hHHHHHHHHHhcCCCEEEEeccC-----------------ChHHHHHHHHHHHHHhcCCCcEEEEE-EE
Q psy15244 752 PA---------EVGAFCRLASQAGIDIFRVFDPL-----------------NSVPNLVKGMDAVQQVTGGSTIVEAT-IC 804 (1427)
Q Consensus 752 ~n---------vv~~~v~~a~~~Gid~~rif~~~-----------------nd~~~~~~~i~~a~~~G~~~~~v~~~-i~ 804 (1427)
++ ..+..++.|.+.|++.+.+.... .-++.+....+.+++.|. . ++
T Consensus 104 ~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-------~~l~ 176 (316)
T 3qxb_A 104 PTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGL-------SMLY 176 (316)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCC-------eEEE
Q ss_pred eeccCC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEEc-cccCcCC------HHHHHHHHHHHHHHcCCceEEEeecCCc
Q psy15244 805 YAGDLT--NPNKKKYSLNYYEDLAKQLVESGAQVLCLK-DMAGLLK------PTAAKLLIGSFREKYPNILIHVHTHDMA 875 (1427)
Q Consensus 805 ~t~d~~--~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~-Dt~G~l~------P~~~~~lv~~lr~~~p~ipi~~H~Hnd~ 875 (1427)
+- . -......+.+.+.++++.+.+.+.+.+.++ |+.=... -....+.++.+...+ .++|.+|..
T Consensus 177 lE---~~~~~~~~~~t~~~~~~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~i----~~vHlkD~~ 249 (316)
T 3qxb_A 177 VE---PVPLATEFPSSAADAARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPWI----AAYHIQQTD 249 (316)
T ss_dssp EC---CCSCTTBSSCSHHHHHHHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGGE----EEEEECBCC
T ss_pred EE---ecCCccccCCCHHHHHHHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhhh----eEEeeecCC
Q ss_pred chHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 876 GTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
+. -|.-..-.|. |..+...++..|+..|++
T Consensus 250 ~~---------------~d~h~~~~G~--G~id~~~i~~~L~~~gy~ 279 (316)
T 3qxb_A 250 GQ---------------LDRHWSFTQP--GVVTPQRLQDFWDKYALT 279 (316)
T ss_dssp SS---------------SCCCBCTTSC--SSCCHHHHHHHHHHTTCS
T ss_pred CC---------------cCccCCCCCC--ceECHHHHHHHHHHcCCC
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=86.77 E-value=1.1 Score=49.39 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhhcCCccEEecc--CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMW--GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~--ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
..+..+.++.+.+ .|++.+++. .|. |--. +...+ +.++.+|+.. +.++...+-..| | +.
T Consensus 16 ~~~l~~~i~~~~~--~Gad~ihldi~DG~-fvp~---~~~g~-~~v~~lr~~~-~~~~~vhlmv~d-------p----~~ 76 (230)
T 1tqj_A 16 FSRLGEEIKAVDE--AGADWIHVDVMDGR-FVPN---ITIGP-LIVDAIRPLT-KKTLDVHLMIVE-------P----EK 76 (230)
T ss_dssp GGGHHHHHHHHHH--TTCSEEEEEEEBSS-SSSC---BCBCH-HHHHHHGGGC-CSEEEEEEESSS-------G----GG
T ss_pred HhHHHHHHHHHHH--cCCCEEEEEEEecC-CCcc---hhhhH-HHHHHHHhhc-CCcEEEEEEccC-------H----HH
Confidence 3445566666666 688887764 111 1001 22223 6777888765 445553332211 2 34
Q ss_pred HHHHHHhcCCCEEEEecc--CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 758 FCRLASQAGIDIFRVFDP--LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~--~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
|++.+.++|.|.+.+-.- ..+ .....++.+++.|. .+-..+ +|. ++.+.+ +.+. .++|
T Consensus 77 ~i~~~~~aGadgv~vh~e~~~~~--~~~~~~~~i~~~g~---~~gv~~-------~p~---t~~e~~----~~~~-~~~D 136 (230)
T 1tqj_A 77 YVEDFAKAGADIISVHVEHNASP--HLHRTLCQIRELGK---KAGAVL-------NPS---TPLDFL----EYVL-PVCD 136 (230)
T ss_dssp THHHHHHHTCSEEEEECSTTTCT--THHHHHHHHHHTTC---EEEEEE-------CTT---CCGGGG----TTTG-GGCS
T ss_pred HHHHHHHcCCCEEEECcccccch--hHHHHHHHHHHcCC---cEEEEE-------eCC---CcHHHH----HHHH-hcCC
Confidence 688999999999988876 543 46677888899998 655443 231 222222 2222 2788
Q ss_pred EEEEcc---cc-CcCCHHHHHHHHHHHHHHcC----CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCC
Q psy15244 836 VLCLKD---MA-GLLKPTAAKLLIGSFREKYP----NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQP 907 (1427)
Q Consensus 836 ~i~i~D---t~-G~l~P~~~~~lv~~lr~~~p----~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~ 907 (1427)
.|.+-= +. |.-.+....+.++.+|+..+ ++||.+ +.|....|.-.++++|||.+=+.-. -.+.+
T Consensus 137 ~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v----~GGI~~~~~~~~~~aGad~vvvGSa----i~~a~ 208 (230)
T 1tqj_A 137 LILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEV----DGGLKPNNTWQVLEAGANAIVAGSA----VFNAP 208 (230)
T ss_dssp EEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTTHHHHHHTCCEEEESHH----HHTSS
T ss_pred EEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEE----ECCcCHHHHHHHHHcCCCEEEECHH----HHCCC
Confidence 664321 11 22223345666777776653 678877 5677778888899999998744321 22345
Q ss_pred cHHHHHHHHHh
Q psy15244 908 AMGTIVSCLEN 918 (1427)
Q Consensus 908 ~lE~vv~~L~~ 918 (1427)
+.++.+..|+.
T Consensus 209 d~~~~~~~l~~ 219 (230)
T 1tqj_A 209 NYAEAIAGVRN 219 (230)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 56666666654
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=2.3 Score=48.32 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=60.1
Q ss_pred EEEEEEEeeccCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccccCcCCH--------HH---HHHHHHHHHHHcCCc
Q psy15244 798 IVEATICYAGDLTNPNKKKY-SLNYYEDLAKQLVESGAQVLCLKDMAGLLKP--------TA---AKLLIGSFREKYPNI 865 (1427)
Q Consensus 798 ~v~~~i~~t~d~~~p~~~~~-~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P--------~~---~~~lv~~lr~~~p~i 865 (1427)
.+.+-+..|-|=+ -|.++| +.+..++.++++.+.|||+|-|.=- ...| ++ +..+|+++++. ++
T Consensus 30 ~iMGIlNvTPDSF-sdgg~~~~~~~a~~~a~~~v~~GAdIIDIGge--STrPga~~v~~~eE~~Rv~pvI~~l~~~--~v 104 (294)
T 2dqw_A 30 RLLGVLNLTPDSF-SDGGRYLDPERALERAREMVAEGADILDLGAE--STRPGAAPVPVEEEKRRLLPVLEAVLSL--GV 104 (294)
T ss_dssp EEEEEEECCC--------------CCHHHHHHHHHHTCSEEEEECC-------------CCHHHHHHHHHHHHHTT--CS
T ss_pred eEEEEEeCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--cCCCCCCCCCHHHHHHHHHHHHHHHHhC--CC
Confidence 5667777775522 244565 7899999999999999999987521 1123 33 44455555543 78
Q ss_pred eEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 866 LIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 866 pi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
||.+-+=+ ...+.+|+++|+++|+-...+ ..+.+-.+++-.
T Consensus 105 piSIDT~~-----~~Va~aAl~aGa~iINdVsg~-----~d~~m~~v~a~~ 145 (294)
T 2dqw_A 105 PVSVDTRK-----PEVAEEALKLGAHLLNDVTGL-----RDERMVALAARH 145 (294)
T ss_dssp CEEEECSC-----HHHHHHHHHHTCSEEECSSCS-----CCHHHHHHHHHH
T ss_pred eEEEECCC-----HHHHHHHHHhCCCEEEECCCC-----CChHHHHHHHHh
Confidence 99886555 456678999999999754322 344554444433
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=86.65 E-value=15 Score=40.89 Aligned_cols=122 Identities=14% Similarity=-0.008 Sum_probs=78.6
Q ss_pred HHHHHHhcCCCEE--EEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEee--ccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 758 FCRLASQAGIDIF--RVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYA--GDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 758 ~v~~a~~~Gid~~--rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t--~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
.++.+.+.|++.+ .+.+...+. +.++..++.+++.|. .+... ++. .|+ + ..++.+.+.++++.+
T Consensus 104 ~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~---~viv~-~~~~G~~l--~--~~~~~~~~~~~a~~a 175 (273)
T 2qjg_A 104 TVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGM---PLIAM-MYPRGKHI--Q--NERDPELVAHAARLG 175 (273)
T ss_dssp CHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTC---CEEEE-EEECSTTC--S--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCC---CEEEE-eCCCCccc--C--CCCCHhHHHHHHHHH
Confidence 3788999999999 665554433 355667778888887 33322 221 111 0 125667777777999
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcc---hHHHHHHHHHHhcCCEEEe
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAG---TGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~G---lA~An~laAi~AGad~VD~ 895 (1427)
.++|+|.|.+.-. .. .++++.+++.. ++|+-.|.=-+.. -++.....++++||+.|-+
T Consensus 176 ~~~Gad~i~~~~~---~~----~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 176 AELGADIVKTSYT---GD----IDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp HHTTCSEEEECCC---SS----HHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHcCCCEEEECCC---CC----HHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 9999999988742 22 24566677776 7898887643322 2233366777899997755
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=5.3 Score=43.27 Aligned_cols=156 Identities=8% Similarity=0.019 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAF 758 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~ 758 (1427)
+.++.+++++.+-+ .|+..+|+. +-..+..+.++.+++..|+..+ | +...-+ ...
T Consensus 26 ~~~~~~~~~~al~~--gGv~~iel~----------~k~~~~~~~i~~l~~~~~~~~v-----g-----agtvi~---~d~ 80 (214)
T 1wbh_A 26 KLEHAVPMAKALVA--GGVRVLNVT----------LRTECAVDAIRAIAKEVPEAIV-----G-----AGTVLN---PQQ 80 (214)
T ss_dssp SGGGHHHHHHHHHH--TTCCEEEEE----------SCSTTHHHHHHHHHHHCTTSEE-----E-----EESCCS---HHH
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEe----------CCChhHHHHHHHHHHHCcCCEE-----e-----eCEEEE---HHH
Confidence 45677889999988 799999985 2245667788889988875432 1 111122 245
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.|.++|.|.++.- -.| ...++.++..|. ..-.. + +|+.. +.++.++|+|.|.
T Consensus 81 ~~~A~~aGAd~v~~p--~~d----~~v~~~~~~~g~---~~i~G-~------------~t~~e----~~~A~~~Gad~v~ 134 (214)
T 1wbh_A 81 LAEVTEAGAQFAISP--GLT----EPLLKAATEGTI---PLIPG-I------------STVSE----LMLGMDYGLKEFK 134 (214)
T ss_dssp HHHHHHHTCSCEEES--SCC----HHHHHHHHHSSS---CEEEE-E------------SSHHH----HHHHHHTTCCEEE
T ss_pred HHHHHHcCCCEEEcC--CCC----HHHHHHHHHhCC---CEEEe-c------------CCHHH----HHHHHHCCCCEEE
Confidence 899999999988743 233 345567777876 22211 1 33333 3556789999988
Q ss_pred EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHh-cCCEE
Q psy15244 839 LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA-GADIV 893 (1427)
Q Consensus 839 i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~A-Gad~V 893 (1427)
+-= +. +..-.+.++.++..+|++|+-. +-|....|+-.-+++ |++.|
T Consensus 135 ~Fp-a~---~~gG~~~lk~i~~~~~~ipvva----iGGI~~~n~~~~l~agg~~~v 182 (214)
T 1wbh_A 135 FFP-AE---ANGGVKALQAIAGPFSQVRFCP----TGGISPANYRDYLALKSVLCI 182 (214)
T ss_dssp ETT-TT---TTTHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTTBSCE
T ss_pred Eec-Cc---cccCHHHHHHHhhhCCCCeEEE----ECCCCHHHHHHHHhcCCCeEE
Confidence 821 01 1111467888888888888743 235555677777887 66655
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=86.37 E-value=3.5 Score=41.47 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=65.8
Q ss_pred CCEEEEEcC----CHHHHHHHHHHHHcCCEEEEEecCCCccC---ccc------cccceEEEcCCCCCcccCCCCHHHHH
Q psy15244 57 MEKILIANR----SEVAIRVARACNEMGIKSVGIYSEQDKFS---AHR------TKVDQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 57 ~kkVLIagr----Geia~riiraa~elGi~~vav~s~~d~~s---~~~------~~aDe~~~i~~~~~~~~~yldi~~Ii 123 (1427)
.++|.|+|- |-++..+++.+.+.|++++.+........ .+. .-+|-++..- + + ....+++
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~v----p--~-~~v~~v~ 86 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVV----P--P-KVGLQVA 86 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECS----C--H-HHHHHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEe----C--H-HHHHHHH
Confidence 569999998 88999999999999999777654432210 000 1123332211 1 0 1244555
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVL 166 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai 166 (1427)
+-+.+.++..++.-.+. +..++++.+++.|+.++||+---+
T Consensus 87 ~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~igpnc~g~ 127 (138)
T 1y81_A 87 KEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGRCIMV 127 (138)
T ss_dssp HHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSCCHHH
T ss_pred HHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEcCCcceE
Confidence 55666788888876654 356788899999999999764433
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=86.35 E-value=7.6 Score=44.28 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC------CCCCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP------NKKKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p------~~~~~~~~~~~~~a 826 (1427)
+.+.+|.++|.+.+-+=.|--++ +.-++.+++++..|. .||+-|-..+..-+. +...++++...+++
T Consensus 86 e~~~~ai~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gv---sVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv 162 (305)
T 1rvg_A 86 ESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGV---TVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFM 162 (305)
T ss_dssp HHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTC---EEEEEESCCCCSCC------CCTTCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCeeeeCCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeeccCccCCccccccccccCCHHHHHHHH
Confidence 55888999999987554444433 455678889999998 888887766521111 11236788888877
Q ss_pred HHHHHCCCCEEEEc--cccCcCC----HHHHHHHHHHHHHHcCCceEEEeecC-------------------CcchHHHH
Q psy15244 827 KQLVESGAQVLCLK--DMAGLLK----PTAAKLLIGSFREKYPNILIHVHTHD-------------------MAGTGVAT 881 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~--Dt~G~l~----P~~~~~lv~~lr~~~p~ipi~~H~Hn-------------------d~GlA~An 881 (1427)
++ .|+|.|.++ -.=|.-+ |.--.++++.+++.+ ++||-+|.=. +.|.....
T Consensus 163 ~~---TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~-~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~ 238 (305)
T 1rvg_A 163 ER---TGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPED 238 (305)
T ss_dssp HH---HCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHH
T ss_pred HH---HCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhc-CCCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHH
Confidence 65 499987765 3334433 444467888999998 5898888744 33777888
Q ss_pred HHHHHHhcCCEEEec
Q psy15244 882 TLACVKAGADIVDVA 896 (1427)
Q Consensus 882 ~laAi~AGad~VD~a 896 (1427)
...|+..|+.-|+..
T Consensus 239 i~~ai~~GV~KiNi~ 253 (305)
T 1rvg_A 239 IKKAISLGIAKINTD 253 (305)
T ss_dssp HHHHHHTTEEEEEEC
T ss_pred HHHHHHCCCeEEEEC
Confidence 888888888887664
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=86.35 E-value=27 Score=40.26 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCCCEEEEe------ccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC-------CCCCH---
Q psy15244 756 GAFCRLASQAGIDIFRVF------DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK-------KKYSL--- 819 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif------~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~-------~~~~~--- 819 (1427)
+..++.+++.|+..+|+- ...++++.+...++.++++|+ .+-..+.|+..|.+|.. ...+.
T Consensus 30 ~~~~~ilk~~G~n~vRlri~v~P~~g~~d~~~~~~~~~~ak~~Gl---~v~ld~hysd~wadP~~q~~p~~W~~~~~~~~ 106 (334)
T 1fob_A 30 QALETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGM---SLYLDLHLSDTWADPSDQTTPSGWSTTDLGTL 106 (334)
T ss_dssp CCHHHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTC---EEEEEECCSSSCCBTTBCBCCTTSCSSCHHHH
T ss_pred chHHHHHHHcCCCEEEEEEEECCCCCccCHHHHHHHHHHHHHCCC---EEEEEeccCCCCCCcccccCccccccCChHHH
Confidence 345778889999999983 344678999999999999999 77777777655566621 01222
Q ss_pred -----HHHHHHHHHHHHCC--CCEEEEcc--ccCcCC-------HHHHHHH----HHHHHHHc--CCceEEEeecCCcch
Q psy15244 820 -----NYYEDLAKQLVESG--AQVLCLKD--MAGLLK-------PTAAKLL----IGSFREKY--PNILIHVHTHDMAGT 877 (1427)
Q Consensus 820 -----~~~~~~a~~l~~~G--ad~i~i~D--t~G~l~-------P~~~~~l----v~~lr~~~--p~ipi~~H~Hnd~Gl 877 (1427)
+|..++++.+.+.| ++.+.+-- +.|.+- ......+ ++++|+.. |+.+|-+|+.+-...
T Consensus 107 ~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~g~~~~~~~l~~~~~~a~~avr~~~~~p~~~v~~h~~~~~~~ 186 (334)
T 1fob_A 107 KWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLDDGWSW 186 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCeEEEEcCCcCch
Confidence 34446667777766 45665442 234442 2333333 44566667 888899999873221
Q ss_pred HHHH--HHHHHHhc------CCEEEeccccC
Q psy15244 878 GVAT--TLACVKAG------ADIVDVAADSM 900 (1427)
Q Consensus 878 A~An--~laAi~AG------ad~VD~av~Gm 900 (1427)
+.-+ ...+...| .|+|-.+..+.
T Consensus 187 ~~~~~~~~~~~~~g~~~~~~~DvIG~syYp~ 217 (334)
T 1fob_A 187 DQQNYFYETVLATGELLSTDFDYFGVSYYPF 217 (334)
T ss_dssp HHHHHHHHHHHHTSSSCGGGCCEEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCCCCCcCEEEEeCCCC
Confidence 1111 12344556 58888877775
|
| >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A | Back alignment and structure |
|---|
Probab=86.32 E-value=0.37 Score=56.72 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=39.1
Q ss_pred EEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
|.-..|+.|+....=.....+++. -+..|.++.+|+|.+++|++||.|++||+|++|+
T Consensus 18 V~~~~v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld 75 (369)
T 1vf7_A 18 VGIVTLEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQID 75 (369)
T ss_dssp -----------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEEC
T ss_pred eEEEEEEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEEC
Confidence 333455666554444455667764 4678999999999999999999999999999986
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=86.23 E-value=5.2 Score=45.02 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEcccc-------------------CcCCHHHHHHHHHHHHHHcCCceEEEeecCC--cc
Q psy15244 818 SLNYYEDLAKQLVESGAQVLCLKDMA-------------------GLLKPTAAKLLIGSFREKYPNILIHVHTHDM--AG 876 (1427)
Q Consensus 818 ~~~~~~~~a~~l~~~Gad~i~i~Dt~-------------------G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd--~G 876 (1427)
+++...++++.+.+.|||.|-|.=-. .-.+...+.++++.+|+..+++||.+-+.-+ +.
T Consensus 32 ~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~ 111 (271)
T 3nav_A 32 NPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA 111 (271)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 56778888888888888876653110 1144556778999999986699998876644 23
Q ss_pred hHHHH-HHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 877 TGVAT-TLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 877 lA~An-~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
.++.+ +-.|.++|+|.+=+.=.++- ..+++...++..|.+
T Consensus 112 ~g~~~f~~~~~~aGvdGvIipDlp~e------e~~~~~~~~~~~gl~ 152 (271)
T 3nav_A 112 RGIDDFYQRCQKAGVDSVLIADVPTN------ESQPFVAAAEKFGIQ 152 (271)
T ss_dssp TCHHHHHHHHHHHTCCEEEETTSCGG------GCHHHHHHHHHTTCE
T ss_pred HhHHHHHHHHHHCCCCEEEECCCCHH------HHHHHHHHHHHcCCe
Confidence 34444 44778999998765443332 245677788877655
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=86.18 E-value=7.7 Score=43.86 Aligned_cols=205 Identities=18% Similarity=0.191 Sum_probs=116.8
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC---CCce
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP---NIPF 735 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p---~~~~ 735 (1427)
|.+|--.+=||.+. .+.++.++.|..+-+ .|.+.|.++|-+|-..+-.-..++.|+|+..+-+.+. ++++
T Consensus 21 lN~TpdSFsdgg~~-----~~~~~a~~~a~~~v~--~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~pi 93 (282)
T 1aj0_A 21 LNVTPDSFSDGGTH-----NSLIDAVKHANLMIN--AGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWI 93 (282)
T ss_dssp EECCTTTSCCCCCC-----THHHHHHHHHHHHHH--HTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred EeCCCCcccccccc-----CCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeE
Confidence 34444456777652 566888888888877 6999999998444111111112455666543333321 4554
Q ss_pred eeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC-
Q psy15244 736 QMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK- 814 (1427)
Q Consensus 736 qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~- 814 (1427)
+.=. +- -+.+++|.++|.++|.=....++ ...++.+++.|. -+. .+.+. +.|..
T Consensus 94 SIDT----------~~----~~va~aAl~aGa~iINdvsg~~d----~~~~~~~a~~~~---~vV-lmh~~---G~p~tm 148 (282)
T 1aj0_A 94 SVDT----------SK----PEVIRESAKVGAHIINDIRSLSE----PGALEAAAETGL---PVC-LMHMQ---GNPKTM 148 (282)
T ss_dssp EEEC----------CC----HHHHHHHHHTTCCEEEETTTTCS----TTHHHHHHHHTC---CEE-EECCS---SCTTCC
T ss_pred EEeC----------CC----HHHHHHHHHcCCCEEEECCCCCC----HHHHHHHHHhCC---eEE-EEccC---CCCccc
Confidence 4322 22 33477888899999875555432 344556677777 221 11222 23321
Q ss_pred ---CCCC------HHHHHHHHHHHHHCCCC--EEEEccc-cCcC-CHHHHHHHHHHHHHHc-CCceEEEee---------
Q psy15244 815 ---KKYS------LNYYEDLAKQLVESGAQ--VLCLKDM-AGLL-KPTAAKLLIGSFREKY-PNILIHVHT--------- 871 (1427)
Q Consensus 815 ---~~~~------~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~l-~P~~~~~lv~~lr~~~-p~ipi~~H~--------- 871 (1427)
..|+ .+++.+.++.+.++|+. .|.| |. .|.. +..+-.++++.+++-- ++.|+-+=.
T Consensus 149 ~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPg~gf~k~~~~n~~ll~~l~~~~~~g~P~l~G~Srksfig~~ 227 (282)
T 1aj0_A 149 QEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLL-DPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQL 227 (282)
T ss_dssp SCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEECCTTCHHHHHH
T ss_pred cccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEECccHhHHhh
Confidence 1122 78999999999999987 4444 53 2322 3456667777766321 366653311
Q ss_pred -----cCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 872 -----HDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 872 -----Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+-.+-.++.+..|+..||++|.+.
T Consensus 228 ~g~~~~~rl~~t~a~~~~a~~~ga~Ivrvh 257 (282)
T 1aj0_A 228 LNVGPSERLSGSLACAVIAAMQGAHIIRVH 257 (282)
T ss_dssp HTCCGGGCHHHHHHHHHHHHHTTCSEEEES
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCCeEEEeC
Confidence 2223333466667788889988775
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=16 Score=39.74 Aligned_cols=179 Identities=19% Similarity=0.208 Sum_probs=106.8
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--CCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN--YSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~--~~~nvv 755 (1427)
-+.+|+.++++...+ .|+.++-+..+. ++..++...++.+.. + ..+||.. .+..+.
T Consensus 16 ~t~~~i~~l~~~a~~--~~~~aVcv~p~~----------------v~~~~~~l~~~~v~v-~---~vigFP~G~~~~~~k 73 (220)
T 1ub3_A 16 ATLEEVAKAAEEALE--YGFYGLCIPPSY----------------VAWVRARYPHAPFRL-V---TVVGFPLGYQEKEVK 73 (220)
T ss_dssp CCHHHHHHHHHHHHH--HTCSEEECCGGG----------------HHHHHHHCTTCSSEE-E---EEESTTTCCSCHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCEEEECHHH----------------HHHHHHHhCCCCceE-E---EEecCCCCCCchHHH
Confidence 577899999988887 588888775431 223334444433221 1 1235532 344555
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~ 830 (1427)
-.-++.|++.|.|.+-+...... .+.+..-+..++++-.. ..+-+ |--+. ..+.+.+...++.+.
T Consensus 74 ~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~-~~lkv-Ilet~--------~l~~e~i~~a~~ia~ 143 (220)
T 1ub3_A 74 ALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKV-ILETG--------YFSPEEIARLAEAAI 143 (220)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEE-ECCGG--------GSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcC-CCceE-EEecC--------CCCHHHHHHHHHHHH
Confidence 56689999999999988776553 34444444444443210 12222 22221 357889999999999
Q ss_pred HCCCCEEEEcc--ccCcCCHHHHHHHHHHHHHHcCCceEEEee--cCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 831 ESGAQVLCLKD--MAGLLKPTAAKLLIGSFREKYPNILIHVHT--HDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 831 ~~Gad~i~i~D--t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~--Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++|||.|--.= +.|-.+|+++..+.+... +.++|-.=. + | ...+++-+++||+.+=+|
T Consensus 144 eaGADfVKTsTGf~~~gat~~dv~~m~~~vg---~~v~VkaaGGir-t----~~~al~~i~aGa~RiG~S 205 (220)
T 1ub3_A 144 RGGADFLKTSTGFGPRGASLEDVALLVRVAQ---GRAQVKAAGGIR-D----RETALRMLKAGASRLGTS 205 (220)
T ss_dssp HHTCSEEECCCSSSSCCCCHHHHHHHHHHHT---TSSEEEEESSCC-S----HHHHHHHHHTTCSEEEET
T ss_pred HhCCCEEEeCCCCCCCCCCHHHHHHHHHhhC---CCCeEEEECCCC-C----HHHHHHHHHCCCcccchh
Confidence 99999876441 235568877776554431 245553322 2 2 256677778999977554
|
| >1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A | Back alignment and structure |
|---|
Probab=85.89 E-value=24 Score=41.95 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=67.1
Q ss_pred HHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q psy15244 760 RLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCL 839 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i 839 (1427)
+..++.|+|.+ ++--+.++.+++.+++.+++.|. -+-+.+++. ++. +.+=.-+.+.+..+.++|++.|.|
T Consensus 146 ~~L~~~GvDll-l~ETi~~~~Eakaa~~a~~~~~l---Pv~iS~T~~-----~~G-~l~G~~~~~~~~~l~~~~~~avGv 215 (406)
T 1lt8_A 146 EVFMKKNVDFL-IAEYFEHVEEAVWAVETLIASGK---PVAATMAIG-----PEG-DLHGVPPGEAAVRLVKAGASIIGV 215 (406)
T ss_dssp HHHHHHTCSEE-EECCCSCHHHHHHHHHHHGGGTS---CEEEEECCB-----TTB-CTTCCCHHHHHHHHHTTTCSEEEE
T ss_pred HHHhhCCCCEE-EEcccCCHHHHHHHHHHHHHhCC---cEEEEEEEC-----CCC-CcCCCcHHHHHHHhhcCCCCEEEe
Confidence 34457899997 55677889999999999998887 333333332 121 122233556666777789988887
Q ss_pred ccccCcCCHHHHHHHHHHHHHHc----CCceEEEee
Q psy15244 840 KDMAGLLKPTAAKLLIGSFREKY----PNILIHVHT 871 (1427)
Q Consensus 840 ~Dt~G~l~P~~~~~lv~~lr~~~----p~ipi~~H~ 871 (1427)
-=+ .-|..+..+++.|++.. .++||.++.
T Consensus 216 NC~---~gP~~~~~~l~~l~~~~~~~g~~~pl~vyP 248 (406)
T 1lt8_A 216 NCH---FDPTISLKTVKLMKEGLEAAQLKAHLMSQP 248 (406)
T ss_dssp ESS---SCHHHHHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred cCC---CCHHHHHHHHHHHHHhhhhcCCCccEEEec
Confidence 532 45999999999998763 257877655
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.79 E-value=3.4 Score=45.94 Aligned_cols=202 Identities=17% Similarity=0.082 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHH
Q psy15244 681 YDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCR 760 (1427)
Q Consensus 681 ~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~ 760 (1427)
.+..++++.+.+ .|+..|++....... . .....++.++.+++.. ++|++.. |+-+-+++ ++
T Consensus 30 ~~~~~~a~~~~~--~Ga~~i~v~d~~~~~---~-~~g~~~~~i~~i~~~~-~iPvi~~-------ggi~~~~~-----i~ 90 (266)
T 2w6r_A 30 ILLRDWVVEVEK--RGAGEILLTSIDRDG---T-KSGYDTEMIRFVRPLT-TLPIIAS-------GGAGKMEH-----FL 90 (266)
T ss_dssp EEHHHHHHHHHH--HTCSEEEEEETTTSS---C-SSCCCHHHHHHHGGGC-CSCEEEE-------SCCCSTHH-----HH
T ss_pred CCHHHHHHHHHH--CCCCEEEEEecCccc---C-CCcccHHHHHHHHHhc-CCCEEEE-------CCCCCHHH-----HH
Confidence 356788888887 699999984321100 0 1112367788887764 5665531 23222333 67
Q ss_pred HHHhcCCCEEEEeccCC----hHHHHHHHHHHHHHhc--CCCcEEEEEEE----------eeccCCCCCCCCCCHHHHHH
Q psy15244 761 LASQAGIDIFRVFDPLN----SVPNLVKGMDAVQQVT--GGSTIVEATIC----------YAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 761 ~a~~~Gid~~rif~~~n----d~~~~~~~i~~a~~~G--~~~~~v~~~i~----------~t~d~~~p~~~~~~~~~~~~ 824 (1427)
.+.+.|+|.+.+....- +.+.++..++ ..| .. .+...+. ++.++. ..+.....+
T Consensus 91 ~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~---~~g~~~~--~i~~~~d~~~~~g~~~v~~~g~~-----~~~~~~~~e 160 (266)
T 2w6r_A 91 EAFLAGADKALAASVFHFREIDMRELKEYLK---KHGGSGQ--AVVVAIDAKRVDGEFMVFTHSGK-----KNTGILLRD 160 (266)
T ss_dssp HHHHHTCSEEECCCCC------CHHHHHHCC-------CCC--EEEEEEEEEEETTEEEEEETTTT-----EEEEEEHHH
T ss_pred HHHHcCCcHhhhhHHHHhCCCCHHHHHHHHH---HcCCCCC--EEEEEEEEEecCCCEEEEECCCc-----eecchhHHH
Confidence 77889999998887765 4445554433 333 10 1111111 110000 000012456
Q ss_pred HHHHHHHCCCCEEEEcc--ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEeccccCC
Q psy15244 825 LAKQLVESGAQVLCLKD--MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVAADSMS 901 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~D--t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~av~GmG 901 (1427)
+++.+.++|++.|.+-+ ..|..... -.++++.+++.. ++|+-.= .|.. ..++..+.++||+.|=+.-.=+
T Consensus 161 ~~~~~~~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~-~ipvia~----GGI~~~ed~~~~~~~Gadgv~vgsal~- 233 (266)
T 2w6r_A 161 WVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLT-TLPIIAS----GGAGKMEHFLEAFLAGADAALAASVFH- 233 (266)
T ss_dssp HHHHHHHTTCSEEEEEETTTTTTCSCC-CHHHHHHHGGGC-CSCEEEE----SCCCSHHHHHHHHHHTCSEEEESTTTC-
T ss_pred HHHHHHHcCCCEEEEEeecCCCCcCCC-CHHHHHHHHHHc-CCCEEEe----CCCCCHHHHHHHHHcCCHHHHccHHHH-
Confidence 77888889999999854 33433322 145778888776 7887553 3554 3567777788999875543322
Q ss_pred CCCCCC-cHHHHHHHHHhCCC
Q psy15244 902 GICSQP-AMGTIVSCLENTDK 921 (1427)
Q Consensus 902 ~~tgn~-~lE~vv~~L~~~g~ 921 (1427)
.++ +.+++...|+..|+
T Consensus 234 ---~~~~~~~~~~~~l~~~g~ 251 (266)
T 2w6r_A 234 ---FREIDMRELKEYLKKHGV 251 (266)
T ss_dssp ---------------------
T ss_pred ---cCCCCHHHHHHHHHHCCC
Confidence 233 56677777766554
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=85.71 E-value=6.1 Score=42.99 Aligned_cols=168 Identities=8% Similarity=0.043 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHH
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRL 761 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~ 761 (1427)
++.++++.+.+ .|+..+++.+ | +.++.+++.. +.++..+++.. .-+..-+.++ -...++.
T Consensus 37 ~~~~~a~~~~~--~G~~~i~~~~--------------~-~~i~~i~~~~-~~p~i~~~~~~-~~~~~~~i~~-~~~~i~~ 96 (234)
T 1yxy_A 37 IMPLMAKAAQE--AGAVGIRANS--------------V-RDIKEIQAIT-DLPIIGIIKKD-YPPQEPFITA-TMTEVDQ 96 (234)
T ss_dssp SHHHHHHHHHH--HTCSEEEEES--------------H-HHHHHHHTTC-CSCEEEECBCC-CTTSCCCBSC-SHHHHHH
T ss_pred hHHHHHHHHHH--CCCcEeecCC--------------H-HHHHHHHHhC-CCCEEeeEcCC-CCccccccCC-hHHHHHH
Confidence 67889998888 6998887632 2 4477777764 56765444432 0011111111 1234888
Q ss_pred HHhcCCCEEEEeccCCh-H--HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 762 ASQAGIDIFRVFDPLNS-V--PNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 762 a~~~Gid~~rif~~~nd-~--~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
+.++|.|.+.+-..... . ..+...++.+++. +. .+-. . .++++. ++.+.++|+|.
T Consensus 97 ~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~---~v~~----~---------~~t~~e----a~~a~~~Gad~ 156 (234)
T 1yxy_A 97 LAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQ---LLMA----D---------ISTFDE----GLVAHQAGIDF 156 (234)
T ss_dssp HHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTC---EEEE----E---------CSSHHH----HHHHHHTTCSE
T ss_pred HHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCC---eEEE----e---------CCCHHH----HHHHHHcCCCE
Confidence 99999999876554321 1 1345677777777 44 3221 1 134333 67788899999
Q ss_pred EE--Ecccc-Cc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEec
Q psy15244 837 LC--LKDMA-GL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 837 i~--i~Dt~-G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~a 896 (1427)
|. +-... |. ..+. -.++++.+++. ++||.. +-|.. ..|+.+++++|||.|=+.
T Consensus 157 i~~~v~g~~~~~~~~~~~-~~~~i~~~~~~--~ipvia----~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 157 VGTTLSGYTPYSRQEAGP-DVALIEALCKA--GIAVIA----EGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp EECTTTTSSTTSCCSSSC-CHHHHHHHHHT--TCCEEE----ESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred EeeeccccCCCCcCCCCC-CHHHHHHHHhC--CCCEEE----ECCCCCHHHHHHHHHCCCCEEEEc
Confidence 82 22111 11 1111 13556777764 677665 34666 778888899999987543
|
| >2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.68 E-value=0.32 Score=51.63 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=39.3
Q ss_pred ecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEE--------------------------E--EecCCCeeCCCCEEE
Q psy15244 1373 VKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKE--------------------------I--FVEVGGQVAQNDLVV 1423 (1427)
Q Consensus 1373 V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~--------------------------i--~v~~G~~V~~g~~L~ 1423 (1427)
|++|+.|++||+|+ -+..|.|.++|+|.- + .|++||.|++|+.|+
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence 89999999999998 467889999998862 3 789999999999987
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=0.37 Score=57.74 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=73.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.+|+|+|-|.++..+++.+++.|+.+++|+.+++........--. +..+ +..+. .+++-+.-.++|+|+..
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~-vi~G-------Dat~~-~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK-VFYG-------DATRM-DLLESAGAAKAEVLINA 75 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC-CEES-------CTTCH-HHHHHTTTTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe-EEEc-------CCCCH-HHHHhcCCCccCEEEEC
Confidence 479999999999999999999999999998887753332222212 2222 11333 44555555678999988
Q ss_pred CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHhCCCCCC
Q psy15244 138 YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDKVLARDAALKADVPII 187 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~a~~aGVpvp 187 (1427)
.+....|..++..+.+.+ |....+..+.|...... +.++|+..+
T Consensus 76 ~~~~~~n~~i~~~ar~~~-----p~~~Iiara~~~~~~~~-L~~~Gad~V 119 (413)
T 3l9w_A 76 IDDPQTNLQLTEMVKEHF-----PHLQIIARARDVDHYIR-LRQAGVEKP 119 (413)
T ss_dssp CSSHHHHHHHHHHHHHHC-----TTCEEEEEESSHHHHHH-HHHTTCSSC
T ss_pred CCChHHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHH-HHHCCCCEE
Confidence 775545555555555543 33344455666655544 467887753
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.27 E-value=4.9 Score=42.92 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=50.6
Q ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 57 MEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 57 ~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+||||.| .|.++..+++.+.+.|++++++...++.... ..+....+. .+..|.+.+.++.+ ++|+|+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~------~Dl~d~~~~~~~~~--~~d~vi 72 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI---ENEHLKVKK------ADVSSLDEVCEVCK--GADAVI 72 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC---CCTTEEEEC------CCTTCHHHHHHHHT--TCSEEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh---ccCceEEEE------ecCCCHHHHHHHhc--CCCEEE
Confidence 67999999 6999999999999999999988765443211 112222221 23467778877776 589988
Q ss_pred eCCCc
Q psy15244 136 PGYGF 140 (1427)
Q Consensus 136 pg~gf 140 (1427)
-..|.
T Consensus 73 ~~a~~ 77 (227)
T 3dhn_A 73 SAFNP 77 (227)
T ss_dssp ECCCC
T ss_pred EeCcC
Confidence 76553
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.22 E-value=6.1 Score=44.74 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC------CCCCCHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN------KKKYSLNYYEDL 825 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~------~~~~~~~~~~~~ 825 (1427)
.+.+.+|.++|.+.+-+=.|.-++ +.-++.++.++..|. .||+-|-..| +.+| ...++++...++
T Consensus 93 ~e~i~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gv---sVEaElG~vg--G~Ed~~~~~~~~yT~Peea~~F 167 (288)
T 3q94_A 93 FEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNV---SVEAELGTVG--GQEDDVIAEGVIYADPAECKHL 167 (288)
T ss_dssp HHHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTC---EEEEEESBCB--CSCSSCGGGGCBCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEeeeec--cccCCcCCccccCCCHHHHHHH
Confidence 345889999999887665554444 344677888888888 8888876664 2222 124678877776
Q ss_pred HHHHHHCCCCEEEEc--cccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 826 AKQLVESGAQVLCLK--DMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~--Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ +.|+|.|.++ -.=|.- .|.-=.++++.+++.+ ++||-+|.= +|........|++.|+.-|+...
T Consensus 168 v~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v-~vpLVlHGg--SG~~~e~i~~ai~~Gv~KiNi~T 237 (288)
T 3q94_A 168 VE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT-GVPLVLHGG--TGIPTADIEKAISLGTSKINVNT 237 (288)
T ss_dssp HH---HHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHH-CSCEEECCC--TTCCHHHHHHHHHTTEEEEEECH
T ss_pred HH---HHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhc-CCCEEEeCC--CCCCHHHHHHHHHcCCeEEEECh
Confidence 65 4699987774 111221 2444456778888888 688877664 58888999999999999988753
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=85.20 E-value=2.4 Score=42.75 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCEEEEEcC----CHHHHHHHHHHHHcCCEEEEEecC--CCcc---Ccccc------ccceEEEcCCCCCcccCCCCHHH
Q psy15244 57 MEKILIANR----SEVAIRVARACNEMGIKSVGIYSE--QDKF---SAHRT------KVDQAFLVGKGMPPVAAYLNIPE 121 (1427)
Q Consensus 57 ~kkVLIagr----Geia~riiraa~elGi~~vav~s~--~d~~---s~~~~------~aDe~~~i~~~~~~~~~yldi~~ 121 (1427)
.++|.|+|. |..+..+++.+.+.|++++.+... .+.. ..+.. -.|-++..- + + .....
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~v-p--~----~~~~~ 85 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFR-P--P----SALMD 85 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECS-C--H----HHHTT
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEe-C--H----HHHHH
Confidence 458999997 678999999999999997777654 2211 00111 123232211 0 0 11234
Q ss_pred HHHHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHH
Q psy15244 122 IICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVL 166 (1427)
Q Consensus 122 Ii~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai 166 (1427)
+++-|.+.++.+|+...|+. +.++++.+++.|+.++||.---+
T Consensus 86 v~~~~~~~gi~~i~~~~g~~--~~~~~~~a~~~Gir~vgpnc~g~ 128 (140)
T 1iuk_A 86 HLPEVLALRPGLVWLQSGIR--HPEFEKALKEAGIPVVADRCLMV 128 (140)
T ss_dssp THHHHHHHCCSCEEECTTCC--CHHHHHHHHHTTCCEEESCCHHH
T ss_pred HHHHHHHcCCCEEEEcCCcC--HHHHHHHHHHcCCEEEcCCccce
Confidence 45556667788888777764 46789999999999999764433
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=85.18 E-value=1.1 Score=49.74 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHH--HHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTA--AKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~--~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
.|...+.+-++.+.++|+|.+-+-=|-|...|.- -...|++||+..|++++.+|.+-+.--.. .-.++++|||+|.
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~--i~~~~~aGAd~it 114 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDAL--IESFAKAGATSIV 114 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHH--HHHHHHHTCSEEE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHH--HHHHHHcCCCEEE
Confidence 4555677888899999999655544447655422 23678899999889999999995544332 2356799999996
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
.-.-. + ..+..++..++..|...|+.+
T Consensus 115 vH~Ea----~--~~~~~~i~~ir~~G~k~Gval 141 (246)
T 3inp_A 115 FHPEA----S--EHIDRSLQLIKSFGIQAGLAL 141 (246)
T ss_dssp ECGGG----C--SCHHHHHHHHHTTTSEEEEEE
T ss_pred Ecccc----c--hhHHHHHHHHHHcCCeEEEEe
Confidence 54322 1 467788888888887766655
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=85.09 E-value=6.7 Score=44.42 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-----C-CCCCCCHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-----P-NKKKYSLNYYEDL 825 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-----p-~~~~~~~~~~~~~ 825 (1427)
.+.+.+|.++|.+.+-+=.|--+ ++.-++.++.++..|. .+|+-|-..|.--+ + +...++++...++
T Consensus 87 ~e~i~~ai~~GFtSVMiDgS~lp~eeNi~~Tk~vv~~ah~~gv---sVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~F 163 (286)
T 1gvf_A 87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDC---SVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRF 163 (286)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTC---EEEEEESCCC-----------CCSSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEECCCCCCHHHHHHHHHHHHHHHHHcCC---EEEEEEeeccCcccCcccccccccCCCHHHHHHH
Confidence 35688999999988754444333 3455678889999998 88888766542111 1 1123678887777
Q ss_pred HHHHHHCCCCEEEEccccCcC------CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 826 AKQLVESGAQVLCLKDMAGLL------KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~Dt~G~l------~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
+++ .|+|.|.++ .|.. .|.-=.++++.+++.+ ++||-+|. -+|........|++.|+.-|+..
T Consensus 164 v~~---TgvD~LAva--iGt~HG~Y~~~p~Ld~~~L~~I~~~~-~vpLVlHG--gSG~~~e~i~~ai~~Gv~KiNi~ 232 (286)
T 1gvf_A 164 VEL---TGVDSLAVA--IGTAHGLYSKTPKIDFQRLAEIREVV-DVPLVLHG--ASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_dssp HHH---HCCSEEEEC--SSCCSSCCSSCCCCCHHHHHHHHHHC-CSCEEECC--CTTCCHHHHHHHHHTTEEEEEEC
T ss_pred HHH---HCCCEEEee--cCccccCcCCCCccCHHHHHHHHHhc-CCCEEEEC--CCCCCHHHHHHHHHCCCeEEEEC
Confidence 764 699977764 3322 3444456788889888 68887776 56888888999999999988765
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=85.00 E-value=13 Score=40.82 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccC--------------ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL--------------NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLN 820 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~--------------nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~ 820 (1427)
..+.++.+++.|.+.|-++..- .+-..++...+.+++.|+ .+...-++. + .+.+
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl---~i~~~~~~~----~-----~~~~ 91 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGI---KIVGTGVYV----A-----EKSS 91 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTC---EEEEEEEEC----C-----SSTT
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCC---eEEEEeccC----C-----ccHH
Confidence 6678999999999999998531 234456777778888998 554332322 1 2456
Q ss_pred HHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDM 874 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd 874 (1427)
.+.+.++.+.++|+..|.+.- | +....++....+ .. ++.|.+|.|..
T Consensus 92 ~~~~~i~~A~~lGa~~v~~~~--~---~~~~~~l~~~a~-~~-gv~l~~En~~~ 138 (262)
T 3p6l_A 92 DWEKMFKFAKAMDLEFITCEP--A---LSDWDLVEKLSK-QY-NIKISVHNHPQ 138 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEECC--C---GGGHHHHHHHHH-HH-TCEEEEECCSS
T ss_pred HHHHHHHHHHHcCCCEEEecC--C---HHHHHHHHHHHH-Hh-CCEEEEEeCCC
Confidence 788888999999999998852 2 344455555444 44 78999999954
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=22 Score=40.95 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=88.1
Q ss_pred HHHHHHhcCCCEEEEe------ccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC-----CCC-C-------
Q psy15244 758 FCRLASQAGIDIFRVF------DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK-----KKY-S------- 818 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif------~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~-----~~~-~------- 818 (1427)
+.+..+++|+..|||- ...++++.+..+++.|+++|+ .+-.-+-|+..+.+|.. .-. +
T Consensus 32 ~~~ilk~~G~N~VRi~~w~~P~~g~~~~~~~~~~~~~A~~~Gl---kV~ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~ 108 (332)
T 1hjs_A 32 LENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGL---GVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWK 108 (332)
T ss_dssp HHHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTC---EEEEEECCSSSCCBTTBCBCCTTCCCSHHHHHHH
T ss_pred HHHHHHHCCCCEEEEeeeeCCCCCcCCHHHHHHHHHHHHHCCC---EEEEEeccCCCcCCccccCCccccccchHHHHHH
Confidence 4667788999999995 346688999999999999999 77777666544445521 011 2
Q ss_pred -HHHHHHHHHHHHHCCC--CEEEEcc--ccCcC-------CHHHHHHH----HHHHHHHc--CCceEEEeecCCcchHHH
Q psy15244 819 -LNYYEDLAKQLVESGA--QVLCLKD--MAGLL-------KPTAAKLL----IGSFREKY--PNILIHVHTHDMAGTGVA 880 (1427)
Q Consensus 819 -~~~~~~~a~~l~~~Ga--d~i~i~D--t~G~l-------~P~~~~~l----v~~lr~~~--p~ipi~~H~Hnd~GlA~A 880 (1427)
.+|..++++.+.+.|+ +.+.+.- +.|.+ ......++ ++++|+.. |+..+-+|..+-.-.+.-
T Consensus 109 ~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~~~~~~l~~~~~~avR~~~~~p~~~v~ih~~~~~~~~~~ 188 (332)
T 1hjs_A 109 LYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDNGWDWGTQ 188 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCHHHHHHHHHHHHHHHHHhccCCCCeEEEEeCCccchHHH
Confidence 4667788888888774 5554421 11222 23444444 45577667 888888888763222211
Q ss_pred -HHHH-HHHhc------CCEEEeccccCC
Q psy15244 881 -TTLA-CVKAG------ADIVDVAADSMS 901 (1427)
Q Consensus 881 -n~la-Ai~AG------ad~VD~av~GmG 901 (1427)
..+. ..+.| .|+|-.+..++=
T Consensus 189 ~~~~d~~~~~g~~~~~~~DvIG~syYp~w 217 (332)
T 1hjs_A 189 NWWYTNVLKQGTLELSDFDMMGVSFYPFY 217 (332)
T ss_dssp HHHHHHHHTTSSSCGGGCCEEEEECCSSS
T ss_pred HHHHHHHHhcCCCCCCCcCEEEEecCccc
Confidence 1112 22344 688888877753
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=84.92 E-value=6.7 Score=43.02 Aligned_cols=126 Identities=23% Similarity=0.377 Sum_probs=79.9
Q ss_pred CcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 751 SPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 751 ~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
.+..+.+..+.+.+.|...+++ +..+. ++.+|+. +. -+ ..++-. |+.+-.- ..++ +.+-++++
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~----~~~~~----i~~ir~~v~~---Pv-ig~~k~-d~~~~~~-~I~~--~~~~i~~~ 97 (232)
T 3igs_A 34 KPEIVAAMALAAEQAGAVAVRI----EGIDN----LRMTRSLVSV---PI-IGIIKR-DLDESPV-RITP--FLDDVDAL 97 (232)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEE----ESHHH----HHHHHTTCCS---CE-EEECBC-CCSSCCC-CBSC--SHHHHHHH
T ss_pred CcchHHHHHHHHHHCCCeEEEE----CCHHH----HHHHHHhcCC---CE-EEEEee-cCCCcce-EeCc--cHHHHHHH
Confidence 3556777888888899999887 23333 3334433 22 11 111111 1111000 0111 23346678
Q ss_pred HHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccC
Q psy15244 830 VESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSM 900 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~Gm 900 (1427)
.++|||.|.+ |++....|....++++.+++. ++.+..-+|+ ...+..|.++|||+|=+++.|+
T Consensus 98 ~~~Gad~V~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~ 160 (232)
T 3igs_A 98 AQAGAAIIAV-DGTARQRPVAVEALLARIHHH--HLLTMADCSS-----VDDGLACQRLGADIIGTTMSGY 160 (232)
T ss_dssp HHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECCS-----HHHHHHHHHTTCSEEECTTTTS
T ss_pred HHcCCCEEEE-CccccCCHHHHHHHHHHHHHC--CCEEEEeCCC-----HHHHHHHHhCCCCEEEEcCccC
Confidence 8899998855 787778898899999999865 6787777775 5667889999999996655555
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=84.90 E-value=15 Score=41.09 Aligned_cols=147 Identities=11% Similarity=0.127 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChH---------------------HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSV---------------------PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN 813 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~---------------------~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~ 813 (1427)
..+.++...++|+|.+.+=.+.+|- ..+-..++.+++.+.+- -+ ..+.|. +|-
T Consensus 33 ~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~-Pv-~lm~y~----n~v 106 (268)
T 1qop_A 33 SLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTI-PI-GLLMYA----NLV 106 (268)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSS-CE-EEEECH----HHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CE-EEEEcc----cHH
Confidence 4556777788999999998888742 12235566777662200 11 112222 220
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCce-EEEeecCCcchHHHHHHHHHHhcCCE
Q psy15244 814 KKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNIL-IHVHTHDMAGTGVATTLACVKAGADI 892 (1427)
Q Consensus 814 ~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ip-i~~H~Hnd~GlA~An~laAi~AGad~ 892 (1427)
..+.. .+.++.+.++|+|.+.+.|-. +++..+++..+++. ++. +.+-.+++.-- ....++....|.-.
T Consensus 107 -~~~g~---~~~~~~~~~aGadgii~~d~~----~e~~~~~~~~~~~~--g~~~i~l~~p~t~~~-~i~~i~~~~~g~v~ 175 (268)
T 1qop_A 107 -FNNGI---DAFYARCEQVGVDSVLVADVP----VEESAPFRQAALRH--NIAPIFICPPNADDD-LLRQVASYGRGYTY 175 (268)
T ss_dssp -HTTCH---HHHHHHHHHHTCCEEEETTCC----GGGCHHHHHHHHHT--TCEEECEECTTCCHH-HHHHHHHHCCSCEE
T ss_pred -HHhhH---HHHHHHHHHcCCCEEEEcCCC----HHHHHHHHHHHHHc--CCcEEEEECCCCCHH-HHHHHHhhCCCcEE
Confidence 01222 466777888999999998854 46688888888876 344 33444444332 22233333334322
Q ss_pred EEeccccCCCCC--CCCcHHHHHHHHHhC
Q psy15244 893 VDVAADSMSGIC--SQPAMGTIVSCLENT 919 (1427)
Q Consensus 893 VD~av~GmG~~t--gn~~lE~vv~~L~~~ 919 (1427)
-.|+.|.+|-. ..+++.+.+..++..
T Consensus 176 -~~s~~G~tG~~~~~~~~~~~~i~~lr~~ 203 (268)
T 1qop_A 176 -LLSRSGVTGAENRGALPLHHLIEKLKEY 203 (268)
T ss_dssp -EESSSSCCCSSSCC--CCHHHHHHHHHT
T ss_pred -EEecCCcCCCccCCCchHHHHHHHHHhc
Confidence 22666665431 123456677777754
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=84.86 E-value=3.7 Score=50.44 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
..+.++.+.++|+|.|.|-..-| .+..+.++|+.+++.+|+++|....=.+ ...+..++++|||.|.+
T Consensus 257 ~~era~aLveaGvd~I~Id~a~g--~~~~v~~~i~~i~~~~~~~~vi~g~v~t----~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 257 AMTRIDALVKASVDAIVLDTAHG--HSQGVIDKVKEVRAKYPSLNIIAGNVAT----AEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTSEEEEEEECS----HHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHhhccceEEeccccc--chhhhhhHHHHHHHhCCCceEEeeeecc----HHHHHHHHHhCCCEEEE
Confidence 35668889999999999865544 4567888999999999888887643322 34568899999999997
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=84.65 E-value=15 Score=40.17 Aligned_cols=179 Identities=12% Similarity=0.160 Sum_probs=105.3
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCC--CCceeeeecccccccccC--CCcc
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIP--NIPFQMILRGNSLVGYSN--YSPA 753 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p--~~~~qml~Rg~n~vgy~~--~~~n 753 (1427)
.+.+|+.++++...+ -|+.++-+..+ | ++..+ .+. ++.+.. .+||.. .+..
T Consensus 26 ~t~~~i~~lc~eA~~--~~~~aVcV~p~--------------~--v~~a~-~l~~~~v~v~t------VigFP~G~~~~~ 80 (231)
T 3ndo_A 26 ATPSDVTALVDEAAD--LGVFAVCVSPP--------------L--VSVAA-GVAPSGLAIAA------VAGFPSGKHVPG 80 (231)
T ss_dssp CCHHHHHHHHHHHHH--HTCSEEEECGG--------------G--HHHHH-HHCCTTCEEEE------EESTTTCCSCHH
T ss_pred CCHHHHHHHHHHHHH--hCCcEEEECHH--------------H--HHHHH-HhcCCCCeEEE------EecCCCCCCcHH
Confidence 567888888887776 48888876532 1 11122 222 333333 234432 3344
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~ 827 (1427)
+.-.-++.|++.|.|.+-+...... .+.+..-+..++++ +. ..+ -.|--++-+.+ ..+.+.....++
T Consensus 81 ~K~~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~--~~l-KvIiEt~~L~~----~~t~eei~~a~~ 153 (231)
T 3ndo_A 81 IKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRA--ATL-KVIVESAALLE----FSGEPLLADVCR 153 (231)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTT--SEE-EEECCHHHHHH----HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccC--Cce-EEEEECcccCC----CCCHHHHHHHHH
Confidence 4555688899999999998877654 34444444444443 22 133 33333331111 148899999999
Q ss_pred HHHHCCCCEEEEcc--c-cCcCCHHHHHHHHHHHHHHcCCceEEEee--cCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 828 QLVESGAQVLCLKD--M-AGLLKPTAAKLLIGSFREKYPNILIHVHT--HDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 828 ~l~~~Gad~i~i~D--t-~G~l~P~~~~~lv~~lr~~~p~ipi~~H~--Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+.++|||-|--.= + .|..++++++.+-+.+. +.++|-.=. + | ...+++-++|||+.+=+|
T Consensus 154 ia~~aGADfVKTSTGf~~~~gAt~edv~lm~~~v~---~~v~VKaaGGIr-t----~~~a~~~i~aGa~RiGtS 219 (231)
T 3ndo_A 154 VARDAGADFVKTSTGFHPSGGASVQAVEIMARTVG---ERLGVKASGGIR-T----AEQAAAMLDAGATRLGLS 219 (231)
T ss_dssp HHHHTTCSEEECCCSCCTTCSCCHHHHHHHHHHHT---TTSEEEEESSCC-S----HHHHHHHHHTTCSEEEES
T ss_pred HHHHHCcCEEEcCCCCCCCCCCCHHHHHHHHHHhC---CCceEEEeCCCC-C----HHHHHHHHHhcchhcccc
Confidence 99999999875442 1 35567776665444433 234442221 2 1 267788889999998665
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=84.55 E-value=36 Score=37.57 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=109.4
Q ss_pred CeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceee
Q psy15244 658 HILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQM 737 (1427)
Q Consensus 658 ~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qm 737 (1427)
++-+...|+++ .+ ....++.+.+ .|++.||+|... + + +.++.+++.+....+..
T Consensus 27 klg~~~~~~~~---------~~---~~~~l~~~~~--~G~~~vEl~~~~-------~--~---~~~~~~~~~l~~~gl~v 80 (287)
T 3kws_A 27 KLSFQEGIAPG---------ES---LNEKLDFMEK--LGVVGFEPGGGG-------L--A---GRVNEIKQALNGRNIKV 80 (287)
T ss_dssp EEEEETTSSCC---------SS---HHHHHHHHHH--TTCCEEECBSTT-------C--G---GGHHHHHHHHTTSSCEE
T ss_pred eEEEEecccCC---------CC---HHHHHHHHHH--cCCCEEEecCCc-------h--H---HHHHHHHHHHHHcCCeE
Confidence 46666666665 12 3445555566 699999998641 1 1 23445555554444332
Q ss_pred --eecccccccccCCCc--------chHHHHHHHHHhcCCCEEEEecc---C-----Ch-------HHHHHHHHHHHHHh
Q psy15244 738 --ILRGNSLVGYSNYSP--------AEVGAFCRLASQAGIDIFRVFDP---L-----NS-------VPNLVKGMDAVQQV 792 (1427)
Q Consensus 738 --l~Rg~n~vgy~~~~~--------nvv~~~v~~a~~~Gid~~rif~~---~-----nd-------~~~~~~~i~~a~~~ 792 (1427)
+.-+ ..++-..++ +..+..++.|.+.|++.+.+... . +. ++.+....+.+++.
T Consensus 81 ~~~~~~--~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~ 158 (287)
T 3kws_A 81 SAICAG--FKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQH 158 (287)
T ss_dssp CEEECC--CCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecC--CCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2211 001100122 24566788899999999988532 1 11 35677788888888
Q ss_pred cCCCcEEEEEEEeeccCCCC--CCCCCCHHHHHHHHHHHHHCCCCEEE-EccccCcCCHHHHHHHHHHHHHHcCCceEEE
Q psy15244 793 TGGSTIVEATICYAGDLTNP--NKKKYSLNYYEDLAKQLVESGAQVLC-LKDMAGLLKPTAAKLLIGSFREKYPNILIHV 869 (1427)
Q Consensus 793 G~~~~~v~~~i~~t~d~~~p--~~~~~~~~~~~~~a~~l~~~Gad~i~-i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~ 869 (1427)
|. . +++-- .++ ...-.+.+.+.++++.+ +.+.+. .-|+.=+..- -.++...+++.. +--.++
T Consensus 159 Gv---~----l~lE~--~~~~~~~~~~~~~~~~~ll~~v---~~~~vg~~~D~~h~~~~--g~d~~~~l~~~~-~~i~~v 223 (287)
T 3kws_A 159 GT---S----VIFEP--LNRKECFYLRQVADAASLCRDI---NNPGVRCMGDFWHMTWE--ETSDMGAFISGG-EYLQHV 223 (287)
T ss_dssp TC---C----EEECC--CCTTTCSSCCCHHHHHHHHHHH---CCTTEEEEEEHHHHHHH--CSCHHHHHHHHG-GGEEEE
T ss_pred CC---E----EEEEe--cCcccCcccCCHHHHHHHHHHc---CCCCeeEEeehHHHHhc--CCCHHHHHHHhh-hhEEEE
Confidence 87 2 22220 011 11135677777777665 433233 3465432210 012233333332 445689
Q ss_pred eecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCC--CcHHHHHHHHHhCCCCC
Q psy15244 870 HTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQ--PAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 870 H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn--~~lE~vv~~L~~~g~~t 923 (1427)
|.+|..+- .. . +.|. .+...++..|+..|++-
T Consensus 224 HlkD~~~r------------------~~--p--G~G~d~id~~~i~~~L~~~gy~g 257 (287)
T 3kws_A 224 HVASRKRR------------------SM--P--GEDGDADNYINGFKGLKMIGYNN 257 (287)
T ss_dssp EECCTTTS------------------CS--T--TTTGGGCCCHHHHHHHHHTTCCS
T ss_pred EeCCCCCC------------------CC--C--CCCCCCcCHHHHHHHHHHcCCCc
Confidence 99997510 11 2 3577 88899999999887663
|
| >3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=84.47 E-value=0.94 Score=46.54 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEcCCcee-eeecCCCeEEEEEEecCC
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTET-LIHASADGVVKEIFVEVG 1413 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~-~i~Ap~~G~V~~i~v~~G 1413 (1427)
|..|..+-+.+.+|+.|.+|+.++-+.+-|-|. -|+||++|+|.-+.--++
T Consensus 106 paeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 106 PAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp EECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred EeCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 667888888999999999999999999999887 699999999987764443
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=84.22 E-value=13 Score=39.67 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=96.9
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++..++++.+.+ .|+..|++.-. ..+..+.++.+++..+ .++.. |. |. ..++ .
T Consensus 16 ~d~~~~~~~~~~~~~--~G~~~i~l~~~----------~~~~~~~i~~i~~~~~-~~l~v---g~---g~--~~~~---~ 71 (212)
T 2v82_A 16 ITPDEALAHVGAVID--AGFDAVEIPLN----------SPQWEQSIPAIVDAYG-DKALI---GA---GT--VLKP---E 71 (212)
T ss_dssp CCHHHHHHHHHHHHH--HTCCEEEEETT----------STTHHHHHHHHHHHHT-TTSEE---EE---EC--CCSH---H
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEeCC----------ChhHHHHHHHHHHhCC-CCeEE---Ee---cc--ccCH---H
Confidence 456778888888877 69999987422 1233456677766543 33322 11 10 1112 3
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.+.+.|.|.+.+ .. .+. ..++.+++.|. .+-.. .++++.. ..+.+.|+|.|
T Consensus 72 ~i~~a~~~Gad~V~~-~~-~~~----~~~~~~~~~g~---~~~~g-------------~~t~~e~----~~a~~~G~d~v 125 (212)
T 2v82_A 72 QVDALARMGCQLIVT-PN-IHS----EVIRRAVGYGM---TVCPG-------------CATATEA----FTALEAGAQAL 125 (212)
T ss_dssp HHHHHHHTTCCEEEC-SS-CCH----HHHHHHHHTTC---EEECE-------------ECSHHHH----HHHHHTTCSEE
T ss_pred HHHHHHHcCCCEEEe-CC-CCH----HHHHHHHHcCC---CEEee-------------cCCHHHH----HHHHHCCCCEE
Confidence 589999999999972 22 222 34566777887 33211 1444432 45567899999
Q ss_pred EEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 838 CLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+.-|. + ...+.++.+++.++ ++||..= -|....|..+++++||+.|-+.
T Consensus 126 ~v~~t~----~-~g~~~~~~l~~~~~~~ipvia~----GGI~~~~i~~~~~~Ga~gv~vG 176 (212)
T 2v82_A 126 KIFPSS----A-FGPQYIKALKAVLPSDIAVFAV----GGVTPENLAQWIDAGCAGAGLG 176 (212)
T ss_dssp EETTHH----H-HCHHHHHHHHTTSCTTCEEEEE----SSCCTTTHHHHHHHTCSEEEEC
T ss_pred EEecCC----C-CCHHHHHHHHHhccCCCeEEEe----CCCCHHHHHHHHHcCCCEEEEC
Confidence 874321 1 22466777777775 5887653 3555567788889999998654
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=84.05 E-value=8.2 Score=44.12 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=100.6
Q ss_pred HHHHHHHhCC-CCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC-------------hHHHHHHHHH
Q psy15244 722 RLAELRELIP-NIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN-------------SVPNLVKGMD 787 (1427)
Q Consensus 722 rl~~lr~~~p-~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n-------------d~~~~~~~i~ 787 (1427)
.++.++...+ +.++.. =+ -.||.+ |.|+. ..+++..+.|+.-+.|=|.+. +.+.+..-|+
T Consensus 77 ~~~~i~r~~~~~~Pvia--D~--d~Gyg~-~~~v~-~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~ 150 (307)
T 3lye_A 77 NADMIANLDPFGPPLIA--DM--DTGYGG-PIMVA-RTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIR 150 (307)
T ss_dssp HHHHHHTSSTTSCCEEE--EC--TTCSSS-HHHHH-HHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHH
T ss_pred HHHhhhccCCCCCcEEE--EC--CCCCCC-HHHHH-HHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHH
Confidence 3444544444 455332 22 236764 66644 468888899999999999875 3333333333
Q ss_pred HHH----HhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcC
Q psy15244 788 AVQ----QVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYP 863 (1427)
Q Consensus 788 ~a~----~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p 863 (1427)
+++ ..|.. ..+.+ -| | -.. ...++..++-++...++|||.|.+- |+-+++++.++++++.
T Consensus 151 Aa~~A~~~~~~d-~~I~A---RT-D---a~~-~~gldeAi~Ra~ay~eAGAD~ifi~---~~~~~~~~~~i~~~~~---- 214 (307)
T 3lye_A 151 AAVATKRRLRSD-FVLIA---RT-D---ALQ-SLGYEECIERLRAARDEGADVGLLE---GFRSKEQAAAAVAALA---- 214 (307)
T ss_dssp HHHHHHHHTTCC-CEEEE---EE-C---CHH-HHCHHHHHHHHHHHHHTTCSEEEEC---CCSCHHHHHHHHHHHT----
T ss_pred HHHHHHHhcCCC-eEEEE---ec-h---hhh-ccCHHHHHHHHHHHHHCCCCEEEec---CCCCHHHHHHHHHHcc----
Confidence 333 33431 12222 12 1 111 2467888999999999999999986 6778888888777764
Q ss_pred CceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 864 NILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 864 ~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
++|+-+-.-...+.-.-+.-.-.+.|+++|-.... .-++...++...+..|+..|.
T Consensus 215 ~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~--~~raa~~a~~~~~~~l~~~g~ 270 (307)
T 3lye_A 215 PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFA--TLAPAYAAIRETLVRLRDHGV 270 (307)
T ss_dssp TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETT--THHHHHHHHHHHHHHHHHHSC
T ss_pred CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChH--HHHHHHHHHHHHHHHHHHhCC
Confidence 35553322111111011234555679999944332 334455567777777765543
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=83.98 E-value=6.1 Score=44.48 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
|+++|||.| .|.++..+++.+.+.|++++++........ +..-.+.. .+.. .+.+.++.+ ++|+|
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~-------~Dl~-~~~~~~~~~--~~d~V 66 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA----INDYEYRV-------SDYT-LEDLINQLN--DVDAV 66 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEE-------CCCC-HHHHHHHTT--TCSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc----CCceEEEE-------cccc-HHHHHHhhc--CCCEE
Confidence 467999999 799999999999999999988876533211 11111221 1234 556666655 79998
Q ss_pred EeCCCcccc---------c----HHHHHHHHHCCCc-eeCCC
Q psy15244 135 HPGYGFLSE---------R----EDFAKAVIGAGLE-FIGPA 162 (1427)
Q Consensus 135 ~pg~gflsE---------~----~~~a~~~e~~Gi~-fiGps 162 (1427)
+-..+.... | ..+.++|.+.|+. |+-.|
T Consensus 67 ih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 67 VHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp EECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 866443221 1 2456677777765 44333
|
| >3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B | Back alignment and structure |
|---|
Probab=83.96 E-value=0.71 Score=55.25 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=45.6
Q ss_pred EEEEEecCCCEEecCCEEEEEEc-CCceeeeecCCCeEEEEEEe-cCCCeeCCCCEEEEEe
Q psy15244 1368 IIEVKVKVGQQVKKNDVLIVMSV-MKTETLIHASADGVVKEIFV-EVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1368 v~~v~V~~Gd~V~~G~~l~~iea-mKme~~i~Ap~~G~V~~i~v-~~G~~V~~g~~L~~i~ 1426 (1427)
|....|+.|+....=.....+++ -.-+..|.++.+|+|.+++| ++||.|++||+|++|+
T Consensus 94 V~~~~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld 154 (413)
T 3ne5_B 94 VKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 154 (413)
T ss_dssp CCEEECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred ceEEEEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence 33455555555555555666665 34578899999999999998 9999999999999986
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=16 Score=42.44 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=80.5
Q ss_pred HHHHhcCCCEEEEeccC------------C------------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 760 RLASQAGIDIFRVFDPL------------N------------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 760 ~~a~~~Gid~~rif~~~------------n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
++|.++|.|.|.|-.+- | ..+-+.+.+++++++=.....+..-++-. |+. ..
T Consensus 159 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~-~~~---~~ 234 (349)
T 3hgj_A 159 RRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSAT-DWG---EG 234 (349)
T ss_dssp HHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESC-CCS---TT
T ss_pred HHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccc-ccc---CC
Confidence 44567899988887654 1 12335667788877632111233333322 121 12
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcc--ccCc----CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhc
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKD--MAGL----LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~D--t~G~----l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AG 889 (1427)
.++.+...++++.+.++|+|.|.+.. +... ..|..-.++++.+|+.+ ++||-.-.-- .....+.+++++|
T Consensus 235 g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi---~t~e~a~~~l~~G 310 (349)
T 3hgj_A 235 GWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV-GLRTGAVGLI---TTPEQAETLLQAG 310 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH-CCEEEECSSC---CCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc-CceEEEECCC---CCHHHHHHHHHCC
Confidence 57888999999999999999998864 1111 01222456788899888 7887653321 1256778899999
Q ss_pred -CCEEEec
Q psy15244 890 -ADIVDVA 896 (1427)
Q Consensus 890 -ad~VD~a 896 (1427)
||.|-..
T Consensus 311 ~aD~V~iG 318 (349)
T 3hgj_A 311 SADLVLLG 318 (349)
T ss_dssp SCSEEEES
T ss_pred CceEEEec
Confidence 9988544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.68 E-value=3.2 Score=46.63 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=59.1
Q ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCcc-Cccc-----cc-cceEEEcCCCCCcccCCCCHHHHHHHHHh
Q psy15244 57 MEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKF-SAHR-----TK-VDQAFLVGKGMPPVAAYLNIPEIICIAKN 128 (1427)
Q Consensus 57 ~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~-s~~~-----~~-aDe~~~i~~~~~~~~~yldi~~Ii~ia~~ 128 (1427)
+++|||.| .|.++..+++++.+.|++++++..+.... .+.. .+ ......+ ..++.|.+.+.++.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v------~~D~~d~~~l~~~~~- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIV------HGSIDDHASLVEAVK- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEE------CCCTTCHHHHHHHHH-
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEE------EeccCCHHHHHHHHc-
Confidence 56899999 59999999999999999988876543211 0000 00 0111111 124567778877776
Q ss_pred cCCCEEEeCCCccc--ccHHHHHHHHHCC-Cc
Q psy15244 129 NNVDAIHPGYGFLS--EREDFAKAVIGAG-LE 157 (1427)
Q Consensus 129 ~~vDaI~pg~gfls--E~~~~a~~~e~~G-i~ 157 (1427)
++|+|+-..+... ....+.++|.+.| +.
T Consensus 77 -~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~ 107 (308)
T 1qyc_A 77 -NVDVVISTVGSLQIESQVNIIKAIKEVGTVK 107 (308)
T ss_dssp -TCSEEEECCCGGGSGGGHHHHHHHHHHCCCS
T ss_pred -CCCEEEECCcchhhhhHHHHHHHHHhcCCCc
Confidence 5899987765421 2235777888877 64
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A | Back alignment and structure |
|---|
Probab=83.67 E-value=0.22 Score=59.99 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK 1392 (1427)
...|.||..|+|.+++|++||.|..||+|++|+...
T Consensus 45 ~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 45 VVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp ------------------------------------
T ss_pred eEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 457999999999999999999999999999998643
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=83.63 E-value=1.8 Score=48.45 Aligned_cols=165 Identities=22% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHhhcCCccEEeccCCCchhhhhhccccCh-HHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhc
Q psy15244 687 SPFVANRFNNLYSLEMWGGAVSHTCLKFLKECP-WERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQA 765 (1427)
Q Consensus 687 a~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p-~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~ 765 (1427)
.+.|++ .|.+.||++.+ |. +| -..++.+-+.++......+ .|..||.+..+ ...|++.+.++
T Consensus 29 ~~~l~~--~Gad~ielg~p--------r~--~~~g~~~~~~~~~l~~~~~~~~---pn~~~~~~~~~--~~~f~~~a~~a 91 (264)
T 1xm3_A 29 KEAVAV--SESDILTFAVR--------RM--NIFEASQPNFLEQLDLSKYTLL---PNTAGASTAEE--AVRIARLAKAS 91 (264)
T ss_dssp HHHHHH--HTCSEEEEETT--------SS--TTC-------CTTCCGGGSEEE---EECTTCSSHHH--HHHHHHHHHHT
T ss_pred HHHHHH--cCCeEEEEccc--------cc--ccCCCCHHHHHHHHHhcCCeEc---CCccccCCHHH--HHHHHHHHHHc
Confidence 467887 69999999854 22 22 2233333333443332222 24555433222 22688888887
Q ss_pred CC-CEEEEeccCCh---HHHHHHHHHHHHHh---cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 766 GI-DIFRVFDPLNS---VPNLVKGMDAVQQV---TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 766 Gi-d~~rif~~~nd---~~~~~~~i~~a~~~---G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
|. +++.+-..... ++.+...++.+++. |+ .+- .++ . .+. +.++.+.++|++.|.
T Consensus 92 gg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~---~vi---~~~----~-----~~~----~~a~~~~~~gad~v~ 152 (264)
T 1xm3_A 92 GLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGF---IVL---PYT----S-----DDV----VLARKLEELGVHAIM 152 (264)
T ss_dssp TCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTC---CEE---EEE----C-----SCH----HHHHHHHHHTCSCBE
T ss_pred CCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCe---EEE---EEc----C-----CCH----HHHHHHHHhCCCEEE
Confidence 54 45544222221 34566777778887 87 432 233 1 233 346777888998762
Q ss_pred E-ccccC----cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEec
Q psy15244 839 L-KDMAG----LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 839 i-~Dt~G----~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~a 896 (1427)
- .-..| ... .++++.+++.. ++|+-.- .|.. ..++.+++++|||.|=+.
T Consensus 153 ~~~~~~Gt~~~~~~----~~~l~~i~~~~-~iPviv~----gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 153 PGASPIGSGQGILN----PLNLSFIIEQA-KVPVIVD----AGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp ECSSSTTCCCCCSC----HHHHHHHHHHC-SSCBEEE----SCCCSHHHHHHHHHTTCSEEEES
T ss_pred ECCcccCCCCCCCC----HHHHHHHHhcC-CCCEEEE----eCCCCHHHHHHHHHcCCCEEEEc
Confidence 2 11122 223 34677777765 8887665 3665 577888899999987544
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=83.59 E-value=1.9 Score=47.43 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=86.8
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccC-ChHHHHHHHHHHHHHhcCCCcEE
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL-NSVPNLVKGMDAVQQVTGGSTIV 799 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~-nd~~~~~~~i~~a~~~G~~~~~v 799 (1427)
+-++.+|+.. +.++-..+--. -|+ .+++.++++|.|.+.+-.-. ++ .+...++.+++.|. .+
T Consensus 47 ~~v~~lr~~~-~~~~dvhLmv~-------dp~----~~i~~~~~aGAd~itvh~Ea~~~--~~~~~i~~i~~~G~---k~ 109 (231)
T 3ctl_A 47 FFVSQVKKLA-TKPLDCHLMVT-------RPQ----DYIAQLARAGADFITLHPETING--QAFRLIDEIRRHDM---KV 109 (231)
T ss_dssp HHHHHHHTTC-CSCEEEEEESS-------CGG----GTHHHHHHHTCSEEEECGGGCTT--THHHHHHHHHHTTC---EE
T ss_pred HHHHHHHhcc-CCcEEEEEEec-------CHH----HHHHHHHHcCCCEEEECcccCCc--cHHHHHHHHHHcCC---eE
Confidence 4677787763 55555544322 233 35778888999998776554 42 46788999999999 66
Q ss_pred EEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEc----cccCcCCHHHHHHHHHHHHHHcC----CceEEEee
Q psy15244 800 EATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLK----DMAGLLKPTAAKLLIGSFREKYP----NILIHVHT 871 (1427)
Q Consensus 800 ~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~----Dt~G~l~P~~~~~lv~~lr~~~p----~ipi~~H~ 871 (1427)
...+ +|. ++.+.+..+ .+ ++|.+.+- -..|-.......+.|+.+|+..+ +++|.+
T Consensus 110 gv~l-------np~---tp~~~~~~~----l~-~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~V-- 172 (231)
T 3ctl_A 110 GLIL-------NPE---TPVEAMKYY----IH-KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEV-- 172 (231)
T ss_dssp EEEE-------CTT---CCGGGGTTT----GG-GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE--
T ss_pred EEEE-------ECC---CcHHHHHHH----Hh-cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEE--
Confidence 5554 332 223333222 22 68877652 12232223345566666766542 567776
Q ss_pred cCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 872 HDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 872 Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
|-|....|.-.+++||||++=+
T Consensus 173 --dGGI~~~~~~~~~~aGAd~~V~ 194 (231)
T 3ctl_A 173 --DGSCNQATYEKLMAAGADVFIV 194 (231)
T ss_dssp --ESCCSTTTHHHHHHHTCCEEEE
T ss_pred --ECCcCHHHHHHHHHcCCCEEEE
Confidence 6687788889999999998743
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=83.56 E-value=8.5 Score=42.18 Aligned_cols=194 Identities=10% Similarity=0.016 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHH
Q psy15244 683 LKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLA 762 (1427)
Q Consensus 683 ~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a 762 (1427)
....++.+.+ .|++.||+|..- + . ...+ -+.++.+++.+....+....=+. .+. ...+..+..++.|
T Consensus 32 ~~~~l~~~~~--~G~~~vEl~~~~-~----~-~~~~-~~~~~~~~~~l~~~gl~i~~~~~---~~~-~~~~~~~~~i~~A 98 (257)
T 3lmz_A 32 LDTTLKTLER--LDIHYLCIKDFH-L----P-LNST-DEQIRAFHDKCAAHKVTGYAVGP---IYM-KSEEEIDRAFDYA 98 (257)
T ss_dssp HHHHHHHHHH--TTCCEEEECTTT-S----C-TTCC-HHHHHHHHHHHHHTTCEEEEEEE---EEE-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCEEEEeccc-C----C-CCCC-HHHHHHHHHHHHHcCCeEEEEec---ccc-CCHHHHHHHHHHH
Confidence 4455556666 699999998641 1 0 0112 23344555444333333221110 011 2234567789999
Q ss_pred HhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEcc
Q psy15244 763 SQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP-NKKKYSLNYYEDLAKQLVESGAQVLCLKD 841 (1427)
Q Consensus 763 ~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p-~~~~~~~~~~~~~a~~l~~~Gad~i~i~D 841 (1427)
.+.|++.+++.-. .+.++...+.+++.|. .+ ++... +| ...-.+.+.+.++++. .+...=..-|
T Consensus 99 ~~lGa~~v~~~p~---~~~l~~l~~~a~~~gv---~l--~lEn~----~~~~~~~~~~~~~~~ll~~---~~p~vg~~~D 163 (257)
T 3lmz_A 99 KRVGVKLIVGVPN---YELLPYVDKKVKEYDF---HY--AIHLH----GPDIKTYPDATDVWVHTKD---LDPRIGMCLD 163 (257)
T ss_dssp HHHTCSEEEEEEC---GGGHHHHHHHHHHHTC---EE--EEECC----CTTCSSSCSHHHHHHHHTT---SCTTEEEEEE
T ss_pred HHhCCCEEEecCC---HHHHHHHHHHHHHcCC---EE--EEecC----CCcccccCCHHHHHHHHHh---CCCCccEEEc
Confidence 9999999998643 4678888899999998 32 22211 12 1123577777777652 2333333456
Q ss_pred ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCC
Q psy15244 842 MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 842 t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~ 921 (1427)
+.=+..-. .+....+++.. +--.++|.||..+- +-.. ....+| .|.-+...++..|+..|+
T Consensus 164 ~~h~~~~g--~d~~~~l~~~~-~~i~~vHl~D~~~~-----------~~~~---~~~~~G--~G~id~~~~~~~L~~~gy 224 (257)
T 3lmz_A 164 VGHDLRNG--CDPVADLKKYH-TRVFDMHIKDVTDS-----------SKAG---VGIEIG--RGKIDFPALIRMMREVNY 224 (257)
T ss_dssp HHHHHHTT--CCHHHHHHHHG-GGEEEEEECEESCS-----------STTC---CEECTT--SSSCCHHHHHHHHHHTTC
T ss_pred hhhHHHcC--CCHHHHHHHhh-cceeEEeecccccc-----------cCCC---CccccC--CCccCHHHHHHHHHHcCC
Confidence 54322100 01223333332 44568999998762 1111 111233 477899999999998876
Q ss_pred CC
Q psy15244 922 RC 923 (1427)
Q Consensus 922 ~t 923 (1427)
+-
T Consensus 225 ~g 226 (257)
T 3lmz_A 225 TG 226 (257)
T ss_dssp CS
T ss_pred Cc
Confidence 53
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=83.50 E-value=5.2 Score=45.54 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=77.8
Q ss_pred ceeEeecccccccchhhhhccccc-----------------cccccccccccc--ccccccc-CCCeEEeecCcccCCCC
Q psy15244 613 KHVLLTDTTFRDAHQSLLATRVRT-----------------YDLKKVMMGAGE--FVNSVRK-LKHILLTDTTFRDAHQS 672 (1427)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~dl~~~~~~~~~--~~~~~~~-~~~v~i~DtTlRDG~Qs 672 (1427)
+.+.|.|||.||+.|+. ....++ +++..+..+|.. +++.+.+ .+++.+.
T Consensus 4 ~~v~I~DttlRDG~Q~~-~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~~~~d~e~v~~i~~~~~~~~i~---------- 72 (293)
T 3ewb_X 4 KKIQFFDTTLRDGEQTP-GVNFDVKEKIQIALQLEKLGIDVIEAGFPISSPGDFECVKAIAKAIKHCSVT---------- 72 (293)
T ss_dssp EEEEEEECTTTCCC------CCCHHHHHHHHHHHHHHTCSEEEEECGGGCHHHHHHHHHHHHHCCSSEEE----------
T ss_pred CeeEEEECCCCCcCcCC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHHHHHhcCCCEEE----------
Confidence 56899999999999987 333333 333333333321 1222211 1122211
Q ss_pred CCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhh-ccccChHHHHHHHHHh---CCC--Cceeeeeccccccc
Q psy15244 673 LLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLK-FLKECPWERLAELREL---IPN--IPFQMILRGNSLVG 746 (1427)
Q Consensus 673 l~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~r-fl~e~p~erl~~lr~~---~p~--~~~qml~Rg~n~vg 746 (1427)
.+ .|-+..|+...++.+.. +|+..|-+..++ .|.=.+ -++-+.-+-++.+++. ... ...+.-+ --+
T Consensus 73 ~l-~~~~~~di~~a~~~~~~--ag~~~v~i~~~~-Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~----~d~ 144 (293)
T 3ewb_X 73 GL-ARCVEGDIDRAEEALKD--AVSPQIHIFLAT-SDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSP----EDA 144 (293)
T ss_dssp EE-EESSHHHHHHHHHHHTT--CSSEEEEEEEEC-SHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEE----ETG
T ss_pred EE-ecCCHHHHHHHHHHHhh--cCCCEEEEEecC-cHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEe----ccC
Confidence 12 23345666666666665 688877765433 222111 1233443333333322 211 1111100 001
Q ss_pred ccCCCcchHHHHHHHHHhcCCCEEEEeccCC--hHHHHHHHHHHHHHh
Q psy15244 747 YSNYSPAEVGAFCRLASQAGIDIFRVFDPLN--SVPNLVKGMDAVQQV 792 (1427)
Q Consensus 747 y~~~~~nvv~~~v~~a~~~Gid~~rif~~~n--d~~~~~~~i~~a~~~ 792 (1427)
+ ..+.+.+.+.++++.+.|++.|.+.|..- ....+...++.+++.
T Consensus 145 ~-~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 191 (293)
T 3ewb_X 145 T-RSDRAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRRE 191 (293)
T ss_dssp G-GSCHHHHHHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHh
Confidence 1 23445566678888889999999988776 345666666666654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.43 E-value=4 Score=45.88 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=59.3
Q ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccc-----cc-cceEEEcCCCCCcccCCCCHHHHHHHHHhc
Q psy15244 57 MEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHR-----TK-VDQAFLVGKGMPPVAAYLNIPEIICIAKNN 129 (1427)
Q Consensus 57 ~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~-----~~-aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~ 129 (1427)
+++|||.| .|.++..+++.+.+.|++++++..+.....+.. .+ ......+ ..++.|.+.+.++.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~------~~D~~d~~~l~~~~~-- 75 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI------EASLDDHQRLVDALK-- 75 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEE------CCCSSCHHHHHHHHT--
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEE------eCCCCCHHHHHHHHh--
Confidence 56899999 599999999999999999888765533210100 00 1111111 124567778777765
Q ss_pred CCCEEEeCCCccc------ccHHHHHHHHHCC-Cc
Q psy15244 130 NVDAIHPGYGFLS------EREDFAKAVIGAG-LE 157 (1427)
Q Consensus 130 ~vDaI~pg~gfls------E~~~~a~~~e~~G-i~ 157 (1427)
++|+|+-..+... ....+.++|.+.| +.
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~ 110 (313)
T 1qyd_A 76 QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIK 110 (313)
T ss_dssp TCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCS
T ss_pred CCCEEEECCccccchhhHHHHHHHHHHHHhcCCCc
Confidence 5999887655431 1135678888888 64
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=83.34 E-value=2.5 Score=42.76 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=54.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCC-Ccc-Cccccc-cceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQ-DKF-SAHRTK-VDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~-d~~-s~~~~~-aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
.++|+|+|.|.++.++++.+.+.|+++++++.++ +.. ...... .+..+..+ +..+.+.+ +-+.-.++|+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~g-------d~~~~~~l-~~a~i~~ad~ 74 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPG-------DSNDSSVL-KKAGIDRCRA 74 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEES-------CTTSHHHH-HHHTTTTCSE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEc-------CCCCHHHH-HHcChhhCCE
Confidence 4589999999999999999999999999997653 110 000001 11222322 12344443 3343457899
Q ss_pred EEeCCCcccccHHHHHHHHHC
Q psy15244 134 IHPGYGFLSEREDFAKAVIGA 154 (1427)
Q Consensus 134 I~pg~gflsE~~~~a~~~e~~ 154 (1427)
|+...+....|...+..+.+.
T Consensus 75 vi~~~~~d~~n~~~~~~a~~~ 95 (153)
T 1id1_A 75 ILALSDNDADNAFVVLSAKDM 95 (153)
T ss_dssp EEECSSCHHHHHHHHHHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHH
Confidence 998876544555455555443
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.29 E-value=4.4 Score=49.52 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
..+.++.+.++|+|.|.|- ++. ..+....++|+.+|+.+|++||..-. ......+.+++++|||.|.+
T Consensus 230 ~~~~a~~l~~aG~d~I~id-~a~-g~~~~~~~~v~~i~~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 230 TGERVAALVAAGVDVVVVD-TAH-GHSKGVIERVRWVKQTFPDVQVIGGN----IATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHHTTCSEEEEE-CSC-CSBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHhhcccceEEec-ccC-CcchhHHHHHHHHHHHCCCceEEEee----eCcHHHHHHHHHcCCCEEEE
Confidence 4567889999999998883 332 34567889999999999999987621 12245568899999999987
|
| >4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A | Back alignment and structure |
|---|
Probab=83.26 E-value=0.2 Score=58.77 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=42.5
Q ss_pred EEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1371 VKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1371 v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|+.|+....=..-..+++- -+..|.++.+|+|.+++|++|+.|++||+|++|+
T Consensus 10 ~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld 64 (369)
T 4dk0_A 10 EEVKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEID 64 (369)
T ss_dssp CCCCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECC
T ss_pred EEEEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEc
Confidence 344455544444455666654 4668999999999999999999999999999885
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=83.09 E-value=10 Score=43.24 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccccCc---CCHHHHHHHHHHHHHHc-CCceEEEee-cCCcchHHHHHHHHHHhc
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVLCLKDMAGL---LKPTAAKLLIGSFREKY-PNILIHVHT-HDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lr~~~-p~ipi~~H~-Hnd~GlA~An~laAi~AG 889 (1427)
...|.+-+.++++.+.+.|+|-|.++-|+|= |+.++-.++++...+.. +.+||-.|+ +++..-++..+..|.++|
T Consensus 31 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G 110 (304)
T 3l21_A 31 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG 110 (304)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 3699999999999999999999999999995 67888889999888876 368998887 788899999999999999
Q ss_pred CCEEEeccccCCCCCCCCcHHHHHHHHHh
Q psy15244 890 ADIVDVAADSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 890 ad~VD~av~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
||.+=+..--.- .|+-+.++..++.
T Consensus 111 adavlv~~P~y~----~~s~~~l~~~f~~ 135 (304)
T 3l21_A 111 AHGLLVVTPYYS----KPPQRGLQAHFTA 135 (304)
T ss_dssp CSEEEEECCCSS----CCCHHHHHHHHHH
T ss_pred CCEEEECCCCCC----CCCHHHHHHHHHH
Confidence 999876543332 2456777776653
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=83.01 E-value=6.5 Score=45.05 Aligned_cols=162 Identities=12% Similarity=-0.006 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEccccC-----cCCHHHHHHHHHHHHHHcCCceEEE-eecCCcchHHHHHHHHHHhcCC--
Q psy15244 820 NYYEDLAKQLVESGAQVLCLKDMAG-----LLKPTAAKLLIGSFREKYPNILIHV-HTHDMAGTGVATTLACVKAGAD-- 891 (1427)
Q Consensus 820 ~~~~~~a~~l~~~Gad~i~i~Dt~G-----~l~P~~~~~lv~~lr~~~p~ipi~~-H~Hnd~GlA~An~laAi~AGad-- 891 (1427)
++.++.+++.++.|||+|.|.=..+ -..|++..++|+.+++.+ ++||.+ -|-|. -.-...+-+|+++|++
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~-~vplsI~DT~~~-~~~~~V~eaal~aga~~k 151 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI-DVPLMIIGCGVE-EKDAEIFPVIGEALSGRN 151 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-SSCEEEECCSCH-HHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC-CceEEEECCCCC-CCCHHHHHHHHHhCCCCC
Confidence 5788999999999999999976321 134567788999999998 999988 66221 1224667799999998
Q ss_pred -EEEeccccCCCCCCCCcHHHHHHHHHhCCCC----CCCChhhHHHHHHHHHHHhCCCCCCCC----cccccchhhhhHH
Q psy15244 892 -IVDVAADSMSGICSQPAMGTIVSCLENTDKR----CGIDLHDVCDYSSYWRKVRELYAPAHN----LLWRCGIDLHDVC 962 (1427)
Q Consensus 892 -~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~----tgidl~~L~~l~~~v~~~~g~~~~~~k----pivG~~~f~~~~~ 962 (1427)
+|+....+ ..+.++.....+|.. +.-|+ ..+.+.++.....-+++.+ |.+|. |.....
T Consensus 152 ~iINdvs~~--------~~~~~~~~aa~~g~~vv~m~~~dv---~~l~~~~~~a~~~Gi~~e~IilDPg~g~--~g~~~e 218 (310)
T 2h9a_B 152 CLLSSATKD--------NYKPIVATCMVHGHSVVASAPLDI---NLSKQLNIMIMEMNLAPNRIIMDPLIGA--LGYGIE 218 (310)
T ss_dssp CEEEEECTT--------THHHHHHHHHHHTCEEEEECSSCH---HHHHHHHHHHHTTTCCGGGEEEECCCCC--TTTTHH
T ss_pred CEEEECCCC--------ccHHHHHHHHHhCCCEEEEChhHH---HHHHHHHHHHHHCCCChhhEEEeCCCcc--ccCchH
Confidence 77654321 255666655554432 21144 3444555566666666665 55442 221111
Q ss_pred HHHHHHHHhhh----hcCCCCCCCCCcCccc------EEEecCC
Q psy15244 963 DYSSYWRKVRE----LYAPFECTDLKAASSE------AYLYEIP 996 (1427)
Q Consensus 963 ~~~~~~~~~~~----~Y~~f~~~~~~g~~~~------v~~~~~p 996 (1427)
.-.+-++..|. ....+..|-+.|.++. -.+++.+
T Consensus 219 ~~~~~l~~ir~~al~~~~~lg~P~l~g~SrK~~~~~es~i~~~~ 262 (310)
T 2h9a_B 219 YSYSIIERMRLGALTGDKILAMPVVCFIGQEAWKAKEAKDPEVA 262 (310)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCSCBEECHHHHHTTSHHHHCSCCG
T ss_pred hHHHHHHHHHHhhhhhhhcCCCCEEEEccCcccccccchhhhcc
Confidence 11133333333 2445555777777766 5556654
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=82.94 E-value=5.8 Score=47.13 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEE-eecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 822 YEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHV-HTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 822 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~-H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
..+.++.+.++|+|.|.| ++. ...|....++++.+|+.+|++||.+ ..++ ..-+..|.++|||.|.++
T Consensus 154 ~~~~a~~~~~~G~d~i~i-~~~-~g~~~~~~e~i~~ir~~~~~~pviv~~v~~-----~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 154 TIERVEELVKAHVDILVI-DSA-HGHSTRIIELIKKIKTKYPNLDLIAGNIVT-----KEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHHHTTCSEEEE-CCS-CCSSHHHHHHHHHHHHHCTTCEEEEEEECS-----HHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHCCCCEEEE-eCC-CCChHHHHHHHHHHHHHCCCCeEEEcCCCc-----HHHHHHHHhcCCCEEEEC
Confidence 356677888999999988 432 3467888999999999998899886 3332 456678889999999884
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=25 Score=39.00 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeee-cccc-cccccCCCc--------
Q psy15244 683 LKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMIL-RGNS-LVGYSNYSP-------- 752 (1427)
Q Consensus 683 ~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~-Rg~n-~vgy~~~~~-------- 752 (1427)
....++.+.+ .|++.||++... + ..+.+ +.++.+++.+....+.... -+.. ...+.. ++
T Consensus 19 ~~~~l~~~~~--~G~~~vEl~~~~-~----~~~~~---~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~-~d~~~r~~~~ 87 (294)
T 3vni_A 19 YKYYIEKVAK--LGFDILEIAASP-L----PFYSD---IQINELKACAHGNGITLTVGHGPSAEQNLSS-PDPDIRKNAK 87 (294)
T ss_dssp HHHHHHHHHH--HTCSEEEEESTT-G----GGCCH---HHHHHHHHHHHHTTCEEEEEECCCGGGCTTC-SCHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCEEEecCcc-c----CCcCH---HHHHHHHHHHHHcCCeEEEeecCCCCcCCCC-CCHHHHHHHH
Confidence 4455555566 599999998642 1 11122 3344444444333333221 1110 001111 12
Q ss_pred chHHHHHHHHHhcCCCEEEEec-c---------CCh-------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFD-P---------LNS-------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~-~---------~nd-------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
+..+..++.|.+.|++.+++.. + .+. ++.+....+.+++.|. .+ ++..... .+...
T Consensus 88 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv---~l--~lEn~~~--~~~~~ 160 (294)
T 3vni_A 88 AFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGV---DF--CLEVLNR--FENYL 160 (294)
T ss_dssp HHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTC---EE--EEECCCT--TTCSS
T ss_pred HHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC---EE--EEEecCc--ccCcc
Confidence 2345578889999999998532 1 111 2456777788888887 32 2222110 11112
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEE-EccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLC-LKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~-i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
-.+.+.+.++++.+ +.+.+. .-|+.=...-. .+....+++.. +--.++|.||...
T Consensus 161 ~~~~~~~~~l~~~v---~~~~vg~~~D~~h~~~~g--~d~~~~l~~~~-~~i~~vHl~D~~r------------------ 216 (294)
T 3vni_A 161 INTAQEGVDFVKQV---DHNNVKVMLDTFHMNIEE--DSIGGAIRTAG-SYLGHLHTGECNR------------------ 216 (294)
T ss_dssp CCSHHHHHHHHHHH---CCTTEEEEEEHHHHHHHC--SCHHHHHHHHG-GGEEEEEECCTTS------------------
T ss_pred cCCHHHHHHHHHHc---CCCCEEEEEEhhhhHHcC--CCHHHHHHHhh-hhEeEEEeCCCCC------------------
Confidence 35777777777765 333233 33653322110 12233333332 4456899999521
Q ss_pred eccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 895 VAADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 895 ~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
... +.|..+...++..|+..|++-.+-+
T Consensus 217 -~~p----G~G~id~~~~~~~L~~~gy~g~~~l 244 (294)
T 3vni_A 217 -KVP----GRGRIPWVEIGEALADIGYNGSVVM 244 (294)
T ss_dssp -CCT----TSSSCCHHHHHHHHHHTTCCSCEEE
T ss_pred -CCC----CCCCcCHHHHHHHHHHhCCCCcEEE
Confidence 111 3678899999999999887644434
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=82.90 E-value=15 Score=44.39 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-----------cCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFD-----------PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~-----------~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
.-..++...+.|++.+-+.. +-++.+.++...+... +. ...+ ++-.-++ .....|..+-..
T Consensus 32 kl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~--~~---~l~~-l~R~~N~--~G~~~~~ddv~~ 103 (464)
T 2nx9_A 32 MLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMP--NT---PLQM-LLRGQNL--LGYRHYADDVVD 103 (464)
T ss_dssp TGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCS--SS---CEEE-EECGGGT--TSSSCCCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCC--CC---eEEE-Eeccccc--cCcccccchhhH
Confidence 34456777889999999954 2334444444333211 11 2222 2211010 011135666677
Q ss_pred HHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCC------cchHHHHHHHHHHhcCCEEEecc
Q psy15244 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDM------AGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd------~GlA~An~laAi~AGad~VD~av 897 (1427)
..++.+.++|++.|+|.|.+--. ..+.+.|+.+|+. +..+.+..|.+ ....+..+-++.++||++|..
T Consensus 104 ~~v~~a~~~Gvd~i~if~~~sd~--~ni~~~i~~ak~~--G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l-- 177 (464)
T 2nx9_A 104 TFVERAVKNGMDVFRVFDAMNDV--RNMQQALQAVKKM--GAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIAL-- 177 (464)
T ss_dssp HHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHT--TCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEE--
T ss_pred HHHHHHHhCCcCEEEEEEecCHH--HHHHHHHHHHHHC--CCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEE--
Confidence 78889999999999999876544 6788888988876 45665555543 344456667788999998743
Q ss_pred ccCCCCCCCCcHHHHHHHHHh
Q psy15244 898 DSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 898 ~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
.-+.|..---...+++..|+.
T Consensus 178 ~DT~G~~~P~~v~~lv~~l~~ 198 (464)
T 2nx9_A 178 KDMAGILTPYAAEELVSTLKK 198 (464)
T ss_dssp EETTSCCCHHHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHHH
Confidence 333332222245666766654
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=82.75 E-value=4 Score=45.26 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=80.2
Q ss_pred HHHHHh--cCCCEEEEecc------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15244 759 CRLASQ--AGIDIFRVFDP------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 759 v~~a~~--~Gid~~rif~~------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~ 830 (1427)
.+.|.+ .|.++|.+-.. +.|+....++.+...+.|+ .+ +.|+.| +| .+++.++
T Consensus 93 a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf---~V---lpy~~d--d~-----------~~akrl~ 153 (265)
T 1wv2_A 93 CRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGF---DV---MVYTSD--DP-----------IIARQLA 153 (265)
T ss_dssp HHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTC---EE---EEEECS--CH-----------HHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCC---EE---EEEeCC--CH-----------HHHHHHH
Confidence 344444 48889988877 3466666667777777798 43 334422 33 6899999
Q ss_pred HCCCCEEEEccc-cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHH-HHHHHHHHhcCCEEEeccccCCCCCCCCc
Q psy15244 831 ESGAQVLCLKDM-AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGV-ATTLACVKAGADIVDVAADSMSGICSQPA 908 (1427)
Q Consensus 831 ~~Gad~i~i~Dt-~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~-An~laAi~AGad~VD~av~GmG~~tgn~~ 908 (1427)
++|++.+----. .|....-.-.++|+.+++.. ++||-. +-|.+. +-+-.|++.|||.|=+.. ++- ++.+|.
T Consensus 154 ~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~-~vPVI~----eGGI~TPsDAa~AmeLGAdgVlVgS-AI~-~a~dP~ 226 (265)
T 1wv2_A 154 EIGCIAVMPLAGLIGSGLGICNPYNLRIILEEA-KVPVLV----DAGVGTASDAAIAMELGCEAVLMNT-AIA-HAKDPV 226 (265)
T ss_dssp HSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEE----ESCCCSHHHHHHHHHHTCSEEEESH-HHH-TSSSHH
T ss_pred HhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcC-CCCEEE----eCCCCCHHHHHHHHHcCCCEEEECh-HHh-CCCCHH
Confidence 999998843122 23322212255677788764 888766 445444 456788999999864332 111 455665
Q ss_pred --HHHHHHHH
Q psy15244 909 --MGTIVSCL 916 (1427)
Q Consensus 909 --lE~vv~~L 916 (1427)
++.++.++
T Consensus 227 ~ma~af~~Av 236 (265)
T 1wv2_A 227 MMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 44445444
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.75 E-value=1.6 Score=47.01 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=55.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCC
Q psy15244 59 KILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGY 138 (1427)
Q Consensus 59 kVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~ 138 (1427)
||+|+|.|.++..+++.+.+.|+++++++.+++.........+..+..+ +..+.+. ++-+.-.++|+|+...
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~g-------d~~~~~~-l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHG-------DGSHKEI-LRDAEVSKNDVVVILT 73 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEES-------CTTSHHH-HHHHTCCTTCEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEc-------CCCCHHH-HHhcCcccCCEEEEec
Confidence 7999999999999999999999999999876653221111112233333 1233333 4444445789999887
Q ss_pred CcccccHHHHHHHHH
Q psy15244 139 GFLSEREDFAKAVIG 153 (1427)
Q Consensus 139 gflsE~~~~a~~~e~ 153 (1427)
+....|...+..+..
T Consensus 74 ~~d~~n~~~~~~a~~ 88 (218)
T 3l4b_C 74 PRDEVNLFIAQLVMK 88 (218)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 655555544554444
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=82.61 E-value=10 Score=44.50 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=84.0
Q ss_pred chHHHHHHHH---HhcCCCEEEEeccC------------C------------hHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q psy15244 753 AEVGAFCRLA---SQAGIDIFRVFDPL------------N------------SVPNLVKGMDAVQQVTGGSTIVEATICY 805 (1427)
Q Consensus 753 nvv~~~v~~a---~~~Gid~~rif~~~------------n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~ 805 (1427)
.+++.|++.| .++|.|.|.|-.+. | ..+-+.+.+++++++-... .+..-|+-
T Consensus 158 ~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~-~v~vrls~ 236 (364)
T 1vyr_A 158 GIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSAD-RIGIRVSP 236 (364)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGG-GEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCC-cEEEEEcc
Confidence 3455666654 77899999995532 1 1234556677777753211 22222222
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcccc--C-cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH
Q psy15244 806 AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMA--G-LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882 (1427)
Q Consensus 806 t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~--G-~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~ 882 (1427)
..++..-.....+.+.+.++++.++++|+|-|.+.... + -..| .++++.+|+.+ ++||-.-.-- ....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~---~~~~~~v~~~~-~iPvi~~Ggi----t~~~a 308 (364)
T 1vyr_A 237 IGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYS---EAFRQKVRERF-HGVIIGAGAY----TAEKA 308 (364)
T ss_dssp SSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCC---HHHHHHHHHHC-CSEEEEESSC----CHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCccc---HHHHHHHHHHC-CCCEEEECCc----CHHHH
Confidence 11111100124577889999999999999999886421 0 0112 34678889998 7887554322 36788
Q ss_pred HHHHHhc-CCEEEeccccC
Q psy15244 883 LACVKAG-ADIVDVAADSM 900 (1427)
Q Consensus 883 laAi~AG-ad~VD~av~Gm 900 (1427)
..++++| ||.|-.+=.-+
T Consensus 309 ~~~l~~g~aD~V~~gR~~l 327 (364)
T 1vyr_A 309 EDLIGKGLIDAVAFGRDYI 327 (364)
T ss_dssp HHHHHTTSCSEEEESHHHH
T ss_pred HHHHHCCCccEEEECHHHH
Confidence 8999998 99986554333
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.59 E-value=2.8 Score=46.69 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=47.4
Q ss_pred CC-EEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 57 ME-KILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 57 ~k-kVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
|+ ||||.| .|.++..+++.+.+.|++++++.... .+..|.+.+.++.+..++|+|
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-----------------------~D~~d~~~~~~~~~~~~~d~v 60 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKL-----------------------LDITNISQVQQVVQEIRPHII 60 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTT-----------------------SCTTCHHHHHHHHHHHCCSEE
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccc-----------------------cCCCCHHHHHHHHHhcCCCEE
Confidence 45 999999 69999999999999999988775410 124567888888888789999
Q ss_pred EeCCCc
Q psy15244 135 HPGYGF 140 (1427)
Q Consensus 135 ~pg~gf 140 (1427)
+-.-+.
T Consensus 61 i~~a~~ 66 (287)
T 3sc6_A 61 IHCAAY 66 (287)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 866543
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=24 Score=39.82 Aligned_cols=148 Identities=15% Similarity=0.112 Sum_probs=90.8
Q ss_pred cchHHHHHHHHH-hcCCCEEEEeccCChHHHHHHHHHHHHHh-----cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHH
Q psy15244 752 PAEVGAFCRLAS-QAGIDIFRVFDPLNSVPNLVKGMDAVQQV-----TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDL 825 (1427)
Q Consensus 752 ~nvv~~~v~~a~-~~Gid~~rif~~~nd~~~~~~~i~~a~~~-----G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~ 825 (1427)
+..+.+.+++|. +.++..+-| ..+++...+ +..+.. +. .+ |.. ++-|.. ..+.+--+.-
T Consensus 41 ~e~I~~lc~eA~~~~~~aaVCV--~P~~V~~a~---~~L~~~~~~~s~v---~V----~tV--igFP~G-~~~~e~K~~E 105 (297)
T 4eiv_A 41 NESVAAVCKIAAKDPAIVGVSV--RPAFVRFIR---QELVKSAPEVAGI---KV----CAA--VNFPEG-TGTPDTVSLE 105 (297)
T ss_dssp HHHHHHHHHHHHSSSCCSEEEE--CGGGHHHHH---HTGGGTCGGGGGS---EE----EEE--ESTTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcEEEEE--CHHHHHHHH---HHhcccCcCCCCC---eE----EEE--ecCCCC-CCCHHHHHHH
Confidence 344777889998 777655544 344554433 333332 23 33 222 135643 5667766667
Q ss_pred HHHHHHCCCCEEEEccccCcCCH------HHHHHHHHHHHHHcCCce--EEEeec--CCcchHHHHHHHHHHhcCCEEEe
Q psy15244 826 AKQLVESGAQVLCLKDMAGLLKP------TAAKLLIGSFREKYPNIL--IHVHTH--DMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~Dt~G~l~P------~~~~~lv~~lr~~~p~ip--i~~H~H--nd~GlA~An~laAi~AGad~VD~ 895 (1427)
++.+.+.|||.|-+.=-.|.++- ..+++-|+++++..++.+ +-+-+- ++.-+-...+..|++||||.|-+
T Consensus 106 a~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKT 185 (297)
T 4eiv_A 106 AVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQT 185 (297)
T ss_dssp HHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEc
Confidence 88888899998877655666554 457777888888764332 333322 23332245677889999999998
Q ss_pred ccccCCCCCCCCcHHHHHHHHH
Q psy15244 896 AADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
|. |+ .++++.+|++..+++
T Consensus 186 ST-Gf--~~~gAT~edV~lM~~ 204 (297)
T 4eiv_A 186 SS-GL--GATHATMFTVHLISI 204 (297)
T ss_dssp CC-SS--SSCCCCHHHHHHHHH
T ss_pred CC-CC--CCCCCCHHHHHHHHH
Confidence 85 33 356777777666554
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=5.4 Score=46.56 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=51.8
Q ss_pred HHHHHHHHC--CCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 824 DLAKQLVES--GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 824 ~~a~~l~~~--Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
+.++.+.+. |++.+.+-=+.| .|....+.++.+|+.+|++||.+.. .+....+..|+++|||.|+++..
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~g--~~~~~~~~i~~lr~~~~~~~vi~g~----v~t~e~A~~a~~aGaD~I~v~~g 191 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVANG--YSEHFVEFVKDVRKRFPQHTIMAGN----VVTGEMVEELILSGADIIKVGIG 191 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCT--TBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHhccCCCCEEEEEecCC--CcHHHHHHHHHHHHhcCCCeEEEEe----CCCHHHHHHHHHhCCCEEEECCC
Confidence 456666665 999887632334 4667888999999999889988754 34467788999999999999643
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=82.54 E-value=3.1 Score=46.70 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=58.1
Q ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCC-CccCc-cc-----cc--cc-eEEEcCCCCCcccCCCCHHHHHHH
Q psy15244 57 MEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQ-DKFSA-HR-----TK--VD-QAFLVGKGMPPVAAYLNIPEIICI 125 (1427)
Q Consensus 57 ~kkVLIag-rGeia~riiraa~elGi~~vav~s~~-d~~s~-~~-----~~--aD-e~~~i~~~~~~~~~yldi~~Ii~i 125 (1427)
+++|||.| .|.++..+++++.+.|++++++..+. ....+ .. .+ .. +.+. .++.|.+.+.++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~--------~D~~d~~~l~~~ 73 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE--------GDINDHETLVKA 73 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEE--------CCTTCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEE--------eCCCCHHHHHHH
Confidence 56899999 59999999999999999988876554 11000 00 00 01 1222 235677777777
Q ss_pred HHhcCCCEEEeCCCccc--ccHHHHHHHHHCC-Cc
Q psy15244 126 AKNNNVDAIHPGYGFLS--EREDFAKAVIGAG-LE 157 (1427)
Q Consensus 126 a~~~~vDaI~pg~gfls--E~~~~a~~~e~~G-i~ 157 (1427)
.+ ++|+|+-..+... ....+.+++.+.| +.
T Consensus 74 ~~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~ 106 (307)
T 2gas_A 74 IK--QVDIVICAAGRLLIEDQVKIIKAIKEAGNVK 106 (307)
T ss_dssp HT--TCSEEEECSSSSCGGGHHHHHHHHHHHCCCS
T ss_pred Hh--CCCEEEECCcccccccHHHHHHHHHhcCCce
Confidence 66 5999887655422 2235677787777 64
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.46 E-value=12 Score=42.93 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccccCc---CCHHHHHHHHHHHHHHcCCceEEEee-cCCcchHHHHHHHHHHhcC
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVLCLKDMAGL---LKPTAAKLLIGSFREKYPNILIHVHT-HDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lr~~~p~ipi~~H~-Hnd~GlA~An~laAi~AGa 890 (1427)
...|.+-+.++++.+.+.|+|-|.++=|+|= |+.++=.++++...+....+||-.|+ +|+..-++..+..|.++||
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga 103 (313)
T 3dz1_A 24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGA 103 (313)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 4699999999999999999999999999995 88888899999988877678988887 6888999999999999999
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
|.+=+ +.+. . .|+-+.++..++
T Consensus 104 davlv-~~P~-~---~~s~~~l~~~f~ 125 (313)
T 3dz1_A 104 AGVMI-APPP-S---LRTDEQITTYFR 125 (313)
T ss_dssp SEEEE-CCCT-T---CCSHHHHHHHHH
T ss_pred CEEEE-CCCC-C---CCCHHHHHHHHH
Confidence 99965 5555 2 256677776665
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=82.40 E-value=16 Score=40.18 Aligned_cols=177 Identities=13% Similarity=0.081 Sum_probs=105.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--CCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN--YSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~--~~~nvv 755 (1427)
-+.+|+.++++...+ .|+.++-+..+.. .+ .+. +... +++++.. .+||.. .+..+.
T Consensus 33 ~t~~~i~~l~~~a~~--~~~~aVcv~p~~v--~a--------~~~---l~~~-~~v~v~t------vigFP~G~~~~~~k 90 (234)
T 1n7k_A 33 ATEEDVRNLVREASD--YGFRCAVLTPVYT--VK--------ISG---LAEK-LGVKLCS------VIGFPLGQAPLEVK 90 (234)
T ss_dssp CCHHHHHHHHHHHHH--HTCSEEEECHHHH--HH--------HHH---HHHH-HTCCEEE------EESTTTCCSCHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCEEEEchHHh--ee--------ehH---hCCC-CCceEEE------EeCCCCCCCcHHHH
Confidence 567899999988887 5888887653311 11 111 2221 1233332 234422 344555
Q ss_pred HHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLV 830 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~ 830 (1427)
-.-++.|++.|.|.+-+......+ +.+....+.+...|. .+-+-+. ++ ..+.+.+...++.+.
T Consensus 91 ~~e~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~g~---~lKvIlE-t~--------~L~~e~i~~a~ria~ 158 (234)
T 1n7k_A 91 LVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGA---VVKVILE-AP--------LWDDKTLSLLVDSSR 158 (234)
T ss_dssp HHHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTC---EEEEECC-GG--------GSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhcCC---eEEEEEe-cc--------CCCHHHHHHHHHHHH
Confidence 667899999999999887766543 244455555555555 4422222 21 246788999999999
Q ss_pred HCCCCEEEEcc---ccCcCCHHHHHHHHHHHHHHcCCceEEEee--cCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 831 ESGAQVLCLKD---MAGLLKPTAAKLLIGSFREKYPNILIHVHT--HDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 831 ~~Gad~i~i~D---t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~--Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
++|||.|--.- +.|-.+++++.. +++++... ++|-.=. ++ ...+++-+++||+.+=+|
T Consensus 159 eaGADfVKTsTG~~~~~gAt~~dv~l--~~m~~~v~-v~VKaaGGirt-----~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 159 RAGADIVKTSTGVYTKGGDPVTVFRL--ASLAKPLG-MGVKASGGIRS-----GIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp HTTCSEEESCCSSSCCCCSHHHHHHH--HHHHGGGT-CEEEEESSCCS-----HHHHHHHHHTTCSEEEET
T ss_pred HhCCCEEEeCCCCCCCCCCCHHHHHH--HHHHHHHC-CCEEEecCCCC-----HHHHHHHHHcCccccchH
Confidence 99999876542 113345655443 22565553 5553321 21 466777779999987554
|
| >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 | Back alignment and structure |
|---|
Probab=82.32 E-value=59 Score=35.09 Aligned_cols=197 Identities=9% Similarity=-0.005 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccc----cccCCCc-
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLV----GYSNYSP- 752 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~v----gy~~~~~- 752 (1427)
++..+....++.+.+ .|++.||++.+ ....+++++.+.+...=....+-.-..+.. +....|+
T Consensus 12 ~~~~~~~~~l~~~~~--~G~~~vEl~~~----------~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (260)
T 1k77_A 12 FTEVPFIERFAAARK--AGFDAVEFLFP----------YNYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGR 79 (260)
T ss_dssp STTSCGGGHHHHHHH--HTCSEEECSCC----------TTSCHHHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTC
T ss_pred hcCCCHHHHHHHHHH--hCCCEEEecCC----------CCCCHHHHHHHHHHcCCceEEEecCCcccccccCCCCCChhH
Q ss_pred -----chHHHHHHHHHhcCCCEEEEeccCCh------------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC
Q psy15244 753 -----AEVGAFCRLASQAGIDIFRVFDPLNS------------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK 815 (1427)
Q Consensus 753 -----nvv~~~v~~a~~~Gid~~rif~~~nd------------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~ 815 (1427)
+..+..++.|.+.|++.+++...... .+.++...+.+++.|. ..++.....+..|...
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-----~l~~E~~~~~~~~~~~ 154 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGK-----RILVEALSPGVKPHYL 154 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTC-----EEEECCCCTTTSTTBS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-----EEEEEeCCccCCCcCc
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHH----HHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCC
Q psy15244 816 KYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAK----LLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD 891 (1427)
Q Consensus 816 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~----~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad 891 (1427)
-.+.+.+.++++.+ |.+.+.++ +.+.-+. +....+++.. +--.++|.||..|-
T Consensus 155 ~~~~~~~~~l~~~~---~~~~~g~~-----~D~~h~~~~~~d~~~~l~~~~-~~i~~vH~~D~~~r-------------- 211 (260)
T 1k77_A 155 FSSQYQALAIVEEV---ARDNVFIQ-----LDTFHAQKVDGNLTHLIRDYA-GKYAHVQIAGLPDR-------------- 211 (260)
T ss_dssp CCSHHHHHHHHHHH---CCTTEEEE-----EEHHHHHHHTCCHHHHHHHTT-TSEEEEEECCTTTC--------------
T ss_pred cCCHHHHHHHHHHh---CCCCEEEE-----eeHHHHHhhCCCHHHHHHHhh-hheeEEEECCCCCC--------------
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 892 ~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
...| .|.-+...++..|+..|++
T Consensus 212 ------~~~G--~G~id~~~~~~~L~~~gy~ 234 (260)
T 1k77_A 212 ------HEPD--DGEINYPWLFRLFDEVGYQ 234 (260)
T ss_dssp ------CCSS--SSSSCHHHHHHHHHHTTCC
T ss_pred ------CCCC--CCccCHHHHHHHHHHcCCC
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=82.28 E-value=17 Score=42.24 Aligned_cols=130 Identities=12% Similarity=0.129 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccC---------------ChHHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPL---------------NSVPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYS 818 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~---------------nd~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~ 818 (1427)
..+..+.+.+.|.|.|-|-... ++.+.+.+.++.+++. +. -+.+-+... +.+ ..+
T Consensus 72 ~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~---PV~vKiR~g--~~~----~~~ 142 (350)
T 3b0p_A 72 LAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRV---PVTVKMRLG--LEG----KET 142 (350)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSS---CEEEEEESC--BTT----CCC
T ss_pred HHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCC---ceEEEEecC--cCc----ccc
Confidence 4445666778899998887532 2345667777877764 54 333333322 111 245
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccccC--cCCHH-------HHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhc
Q psy15244 819 LNYYEDLAKQLVESGAQVLCLKDMAG--LLKPT-------AAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 819 ~~~~~~~a~~l~~~Gad~i~i~Dt~G--~l~P~-------~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AG 889 (1427)
.+...++++.+.++|++.|.+-+-.. .+.+. .-.+++..+++.+|++||-.=.--..+ ..+.++++ |
T Consensus 143 ~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~---eda~~~l~-G 218 (350)
T 3b0p_A 143 YRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSL---EEALFHLK-R 218 (350)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSH---HHHHHHHT-T
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCH---HHHHHHHh-C
Confidence 67889999999999999999866331 12222 136789999999888998765533322 33344444 9
Q ss_pred CCEEEecc
Q psy15244 890 ADIVDVAA 897 (1427)
Q Consensus 890 ad~VD~av 897 (1427)
||.|-..-
T Consensus 219 aD~V~iGR 226 (350)
T 3b0p_A 219 VDGVMLGR 226 (350)
T ss_dssp SSEEEECH
T ss_pred CCEEEECH
Confidence 99885543
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=82.27 E-value=9.5 Score=43.47 Aligned_cols=209 Identities=15% Similarity=0.178 Sum_probs=115.0
Q ss_pred HHHHHhhcCCccEEeccCCCchhhhhhccc--cChH----HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHH
Q psy15244 687 SPFVANRFNNLYSLEMWGGAVSHTCLKFLK--ECPW----ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCR 760 (1427)
Q Consensus 687 a~~l~~~~~G~~~iE~~ggatfd~~~rfl~--e~p~----erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~ 760 (1427)
|..+++ +|++.|=+.|.+.--+.+.+-+ .-+| ...+.++...++.++.. =. -.||.+ |.| +...++
T Consensus 31 A~l~e~--aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~Pvia--D~--d~Gyg~-~~~-v~~tv~ 102 (302)
T 3fa4_A 31 ARVALS--AGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIA--DA--DTGYGG-PIM-VARTTE 102 (302)
T ss_dssp HHHHHT--TTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEE--EC--TTTTSS-HHH-HHHHHH
T ss_pred HHHHHH--cCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEE--EC--CCCCCC-HHH-HHHHHH
Confidence 444555 6888775533211111122211 1123 34455555555666432 22 237764 666 445688
Q ss_pred HHHhcCCCEEEEeccCC-------------hHHHHHHHHHHHHH----hcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 761 LASQAGIDIFRVFDPLN-------------SVPNLVKGMDAVQQ----VTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 761 ~a~~~Gid~~rif~~~n-------------d~~~~~~~i~~a~~----~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+..+.|+.-+.|=|.+. +.+.+..-|+++++ .+.. .+-.+ =| | -. ....++.-+
T Consensus 103 ~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d--~~I~A--RT-D---a~-~~~gldeAi 173 (302)
T 3fa4_A 103 QYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSD--IVVIA--RT-D---SL-QTHGYEESV 173 (302)
T ss_dssp HHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCC--CEEEE--EE-C---CH-HHHCHHHHH
T ss_pred HHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCC--EEEEE--Ee-c---cc-ccCCHHHHH
Confidence 88899999999999875 33344333333333 3431 22222 22 1 10 124688889
Q ss_pred HHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCC
Q psy15244 824 DLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGI 903 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~ 903 (1427)
+-++...++|||.|.+- |+-+++++.++++++. ++|+-+-.-...+...-+.-.-.+.|+++|-.....+ +
T Consensus 174 ~Ra~ay~eAGAD~ifi~---g~~~~~ei~~~~~~~~----~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~--r 244 (302)
T 3fa4_A 174 ARLRAARDAGADVGFLE---GITSREMARQVIQDLA----GWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAAL--G 244 (302)
T ss_dssp HHHHHHHTTTCSEEEET---TCCCHHHHHHHHHHTT----TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTTTH--H
T ss_pred HHHHHHHHcCCCEEeec---CCCCHHHHHHHHHHhc----CCceeEEEecCCCCCCCCHHHHHHcCCCEEEEchHHH--H
Confidence 99999999999999875 5677887777666553 3565432221111111123445567999985544333 4
Q ss_pred CCCCcHHHHHHHHHhCCC
Q psy15244 904 CSQPAMGTIVSCLENTDK 921 (1427)
Q Consensus 904 tgn~~lE~vv~~L~~~g~ 921 (1427)
+...+++..+..|+..|.
T Consensus 245 aa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 245 PAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 555567777777765543
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=82.26 E-value=8.5 Score=43.90 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC--------CCCCCHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN--------KKKYSLNYYED 824 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~--------~~~~~~~~~~~ 824 (1427)
+.+.+|+++|.+.+-|=.|.-++ +.-++.+++++..|. .||+-|-..+. .+| ...++++...+
T Consensus 88 e~~~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gv---sVEaELG~igG--~Ed~~~~~~~~~~yT~Peea~~ 162 (307)
T 3n9r_A 88 ESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGV---SVEAELGRLMG--IEDNISVDEKDAVLVNPKEAEQ 162 (307)
T ss_dssp HHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTC---EEEEEESCCCC--C----------CCSCCHHHHHH
T ss_pred HHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCC---eEEEEeeeecc--ccCCcccccccccCCCHHHHHH
Confidence 56888999999887665554444 345678889999998 88887766541 221 22467888877
Q ss_pred HHHHHHHCCCCEEEEc--cccCcC----CHHHHHHHHHHHHHHcCCceEEEee-------------------cCCcchHH
Q psy15244 825 LAKQLVESGAQVLCLK--DMAGLL----KPTAAKLLIGSFREKYPNILIHVHT-------------------HDMAGTGV 879 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~--Dt~G~l----~P~~~~~lv~~lr~~~p~ipi~~H~-------------------Hnd~GlA~ 879 (1427)
++++ .|+|.|.++ -.=|.- .|.--.++++.+++. +++||-+|. +++.|...
T Consensus 163 Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~-~~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~ 238 (307)
T 3n9r_A 163 FVKE---SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRL-TNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPF 238 (307)
T ss_dssp HHHH---HCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHH-HCSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCH
T ss_pred HHHH---HCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhc-CCCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCH
Confidence 7654 699988774 222332 243344555666554 489999986 33558889
Q ss_pred HHHHHHHHhcCCEEEecc
Q psy15244 880 ATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 880 An~laAi~AGad~VD~av 897 (1427)
.....|++.|+.-|+...
T Consensus 239 e~i~~ai~~GV~KiNi~T 256 (307)
T 3n9r_A 239 EFLQESVKGGINKVNTDT 256 (307)
T ss_dssp HHHHHHHHTTEEEEEECH
T ss_pred HHHHHHHHcCceEEEech
Confidence 999999999999887753
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.24 E-value=8.4 Score=43.97 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=50.2
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcC--CEEEEEecCCCccCcc--cccc--ceEEEcCCCCCcccCCCCHHHHHHHHHhc
Q psy15244 57 MEKILIANR-SEVAIRVARACNEMG--IKSVGIYSEQDKFSAH--RTKV--DQAFLVGKGMPPVAAYLNIPEIICIAKNN 129 (1427)
Q Consensus 57 ~kkVLIagr-Geia~riiraa~elG--i~~vav~s~~d~~s~~--~~~a--De~~~i~~~~~~~~~yldi~~Ii~ia~~~ 129 (1427)
++||||.|. |.++..+++.+.+.| +++++++......... .... .....+ ..+..|.+.+.++.+..
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~Dl~d~~~~~~~~~~~ 97 (346)
T 4egb_A 24 AMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFV------KGEIQNGELLEHVIKER 97 (346)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEE------ECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEE------EcCCCCHHHHHHHHhhc
Confidence 579999995 999999999999999 7777665433211110 0010 111111 12356788888888888
Q ss_pred CCCEEEeCCC
Q psy15244 130 NVDAIHPGYG 139 (1427)
Q Consensus 130 ~vDaI~pg~g 139 (1427)
++|+|+-.-+
T Consensus 98 ~~d~Vih~A~ 107 (346)
T 4egb_A 98 DVQVIVNFAA 107 (346)
T ss_dssp TCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 8999886544
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=82.22 E-value=42 Score=36.59 Aligned_cols=181 Identities=13% Similarity=0.040 Sum_probs=103.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--CCcch
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN--YSPAE 754 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~--~~~nv 754 (1427)
-.+.+|+.++++...+ .|+.++-+..+. +...++.+.++++. ..+||-. .+..+
T Consensus 13 ~~t~~~i~~l~~~A~~--~~~~aVcv~p~~----------------v~~a~~~l~gv~v~------tvigFP~G~~~~~~ 68 (226)
T 1vcv_A 13 YLTVDEAVAGARKAEE--LGVAAYCVNPIY----------------APVVRPLLRKVKLC------VVADFPFGALPTAS 68 (226)
T ss_dssp TCCHHHHHHHHHHHHH--HTCSEEEECGGG----------------HHHHGGGCSSSEEE------EEESTTTCCSCHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCCEEEECHHH----------------HHHHHHHhCCCeEE------EEeCCCCCCCchHH
Confidence 3578899999888877 589888775431 22233334332222 2345522 23333
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
.-.-++. ++.|.|.+-+...... .+.+..-+..++++ +. ..+-+-|... ..+.+.....++.
T Consensus 69 k~~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~--~~lKvIlEt~---------~Lt~eei~~a~~i 136 (226)
T 1vcv_A 69 RIALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGG--RVVKVITEEP---------YLRDEERYTLYDI 136 (226)
T ss_dssp HHHHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTT--SEEEEECCGG---------GCCHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcC--CCceEEEecc---------CCCHHHHHHHHHH
Confidence 4445777 8999999988876553 34444444444443 22 1222222211 2357889999999
Q ss_pred HHHCCCCEEEEc--cc----------cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHh---cCC--
Q psy15244 829 LVESGAQVLCLK--DM----------AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA---GAD-- 891 (1427)
Q Consensus 829 l~~~Gad~i~i~--Dt----------~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~A---Gad-- 891 (1427)
+.++|||.|--. =+ .|-.+|+++..+-+.+++.-+.++|-.=.=--. ...+++-+++ ||+
T Consensus 137 a~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt---~~~al~~i~a~~~Ga~~~ 213 (226)
T 1vcv_A 137 IAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRT---REQAKAIVDAIGWGEDPA 213 (226)
T ss_dssp HHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCS---HHHHHHHHHHHCSCSCTT
T ss_pred HHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCC---HHHHHHHHHHHHCCCCcC
Confidence 999999987654 22 366788888665555554333466533221111 3444444455 999
Q ss_pred --EEEec
Q psy15244 892 --IVDVA 896 (1427)
Q Consensus 892 --~VD~a 896 (1427)
.+=+|
T Consensus 214 ~fRiGtS 220 (226)
T 1vcv_A 214 RVRLGTS 220 (226)
T ss_dssp TEEEEES
T ss_pred CceEecC
Confidence 88554
|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
Probab=82.16 E-value=11 Score=41.76 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChH---HHHHHHHHHHHHhcCCCcEEEEEEEe--eccCCCCCCC--CCCHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSV---PNLVKGMDAVQQVTGGSTIVEATICY--AGDLTNPNKK--KYSLNYYEDLAK 827 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~---~~~~~~i~~a~~~G~~~~~v~~~i~~--t~d~~~p~~~--~~~~~~~~~~a~ 827 (1427)
..+.++.+++.|++.|-++..-... ..++...+.+++.|+ .+.....+ ..++.+|+.. ....+++.+.++
T Consensus 19 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl---~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~ 95 (290)
T 2qul_A 19 FPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGL---TVMCCIGLKSEYDFASPDKSVRDAGTEYVKRLLD 95 (290)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTC---EEEEEEEECGGGCTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCC---ceEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5678899999999999998653222 456667778888998 55443221 2344444321 123478888888
Q ss_pred HHHHCCCCEEEEc--cccCc-------CCHHHHHHHHHHHHH------HcCCceEEEeecCC
Q psy15244 828 QLVESGAQVLCLK--DMAGL-------LKPTAAKLLIGSFRE------KYPNILIHVHTHDM 874 (1427)
Q Consensus 828 ~l~~~Gad~i~i~--Dt~G~-------l~P~~~~~lv~~lr~------~~p~ipi~~H~Hnd 874 (1427)
.+.++|+..+.+. ...|. ........++..|++ .. ++.|.+|.|+.
T Consensus 96 ~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-gv~l~lEn~~~ 156 (290)
T 2qul_A 96 DCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDY-GIIYALEVVNR 156 (290)
T ss_dssp HHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHH-TCEEEEECCCT
T ss_pred HHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHc-CCEEEEEeCcc
Confidence 9999999988752 11132 233444445555543 23 68899999884
|
| >2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} | Back alignment and structure |
|---|
Probab=82.10 E-value=15 Score=40.25 Aligned_cols=197 Identities=13% Similarity=0.068 Sum_probs=119.8
Q ss_pred CCccEEeccCCCchhhhhhccccChHHHHHH-HHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcC-CCEEEE
Q psy15244 695 NNLYSLEMWGGAVSHTCLKFLKECPWERLAE-LRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAG-IDIFRV 772 (1427)
Q Consensus 695 ~G~~~iE~~ggatfd~~~rfl~e~p~erl~~-lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~G-id~~ri 772 (1427)
.|.+.+|.- .| |+.+..++.+.. +++..++.++-.-+|...-=|.....++...+.++.+++.| +|.+-|
T Consensus 27 ~~~D~vElR----vD----~l~~~~~~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~d~iDv 98 (231)
T 2ocz_A 27 EDVNLIEWR----AD----FLPKDEIVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDF 98 (231)
T ss_dssp TTCSEEEEE----GG----GSCGGGHHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cCCCEEEEE----ec----cccccCHHHHHHHHHHHcCCCcEEEEEeecccCCCCCCCHHHHHHHHHHHHHcCCCCEEEE
Confidence 478999962 22 333322445543 33336667777777754333444456666777889999988 998887
Q ss_pred eccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHH
Q psy15244 773 FDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAK 852 (1427)
Q Consensus 773 f~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~ 852 (1427)
=.... +..++.++...+ .-++|- ||. ... +.+.++.+++.+.|||++-|+=|+ -.+.++.
T Consensus 99 El~~~-----~~~i~~~~~~~k------vI~S~H-df~-----~tp-~el~~~~~~~~~~gaDivKia~~a--~~~~D~l 158 (231)
T 2ocz_A 99 EYFTH-----KSVFQEMLDFPN------LILSYH-NFE-----ETP-ENLMEAFSEMTKLAPRVVKIAVMP--QSEQDVL 158 (231)
T ss_dssp ETTTT-----GGGGGGGTTCSS------EEEEEE-ESS-----CCC-TTHHHHHHHHHHTCCSEEEEEECC--SSHHHHH
T ss_pred ECCCC-----HHHHHHhhcCCe------EEEEec-CCC-----CCH-HHHHHHHHHHHHcCCCEEEEEeec--CCHHHHH
Confidence 76553 122333333211 223443 331 122 788899999999999999998775 3667888
Q ss_pred HHHHHHHH---HcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCC
Q psy15244 853 LLIGSFRE---KYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKR 922 (1427)
Q Consensus 853 ~lv~~lr~---~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~ 922 (1427)
.|..+..+ ..++.|+-. -+.-.+|...=+.+--.|--+.-+++.. .--+||.+.+++...|+.+..+
T Consensus 159 ~ll~~~~~~~~~~~~~P~I~--~~MG~~G~~SRi~~~~~GS~~Tf~~l~~-~sAPGQl~~~el~~~l~~l~~~ 228 (231)
T 2ocz_A 159 DLMNYTRGFKTLNPEQEFAT--ISMGKLGRLSRFAGDVIGSSWTYVSLDH-VSGPGQVTLNDMKRIIEVLEMD 228 (231)
T ss_dssp HHHHHHHHHHHHCTTCEEEE--EECHHHHGGGGGCHHHHTCCEEECBC-------CCCBHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhccCCCCEEE--EEcCCCchhHHHHHHHhCCceEeccCCC-CCCCCCCCHHHHHHHHHHhhhh
Confidence 88776543 235667533 3334445555566777788888888744 5578999999998888765433
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=82.01 E-value=3.5 Score=46.16 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcc-ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHh--cCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKD-MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA--GADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~D-t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~A--Gad~V 893 (1427)
.+.+..++.++++.+.|||+|-|.= ....-.++++.+++..+++.. ++||.+-+=+ ...+.+|+++ |+++|
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~~~v~~~ee~~rvv~~i~~~~-~~pisIDT~~-----~~v~~aAl~a~~Ga~iI 95 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEVS-NLTLCLDSTN-----IKAIEAGLKKCKNRAMI 95 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----CHHHHHHHHHHHHHTTC-CSEEEEECSC-----HHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCChHHHHHHHHHHHHHhC-CCeEEEeCCC-----HHHHHHHHhhCCCCCEE
Confidence 4789999999999999999998872 223456788999999999876 8999996654 4556788888 99999
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCC
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTD 920 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g 920 (1427)
+-.. |. ..+++.++....+++
T Consensus 96 Ndvs-~~-----~d~~~~~~~~~a~~~ 116 (262)
T 1f6y_A 96 NSTN-AE-----REKVEKLFPLAVEHG 116 (262)
T ss_dssp EEEC-SC-----HHHHHHHHHHHHHTT
T ss_pred EECC-CC-----cccHHHHHHHHHHhC
Confidence 7432 22 234556766666654
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=81.89 E-value=4.5 Score=46.56 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=84.7
Q ss_pred HHHHHHHHH-HCCCCEEEEc-cccCcC----CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCC---E
Q psy15244 822 YEDLAKQLV-ESGAQVLCLK-DMAGLL----KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGAD---I 892 (1427)
Q Consensus 822 ~~~~a~~l~-~~Gad~i~i~-Dt~G~l----~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad---~ 892 (1427)
..+.+++.+ +.|||.|.|. .++.-. .+++..++|+.+++.+ ++||.+-.-.+.-.=...+-+|+++|++ .
T Consensus 82 ~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~-~vPlsIDg~~~~T~~~eV~eaAleagag~~~l 160 (323)
T 4djd_D 82 PGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAV-GVPLVVVGCGDVEKDHEVLEAVAEAAAGENLL 160 (323)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-CSCEEEECCSCHHHHHHHHHHHHHHTTTSCCE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhC-CceEEEECCCCCCCCHHHHHHHHHhcCCCCCe
Confidence 678888888 9999999996 443332 4567888999999987 9999998544444556677899999976 6
Q ss_pred EEeccccCCCCCCCCcHHHHHHHHHhCCCC----CCCChhhHHHHHHHHHHHhCCCCCCCCcccccc--hhhhhHHHHHH
Q psy15244 893 VDVAADSMSGICSQPAMGTIVSCLENTDKR----CGIDLHDVCDYSSYWRKVRELYAPAHNLLWRCG--IDLHDVCDYSS 966 (1427)
Q Consensus 893 VD~av~GmG~~tgn~~lE~vv~~L~~~g~~----tgidl~~L~~l~~~v~~~~g~~~~~~kpivG~~--~f~~~~~~~~~ 966 (1427)
|+. +++ + + .+.++.....+|.. +..|+.. +.+.+......-+++.+=++-.+ .|......--.
T Consensus 161 INs-v~~--~---~--~~~m~~laa~~g~~vVlmh~~d~~~---~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~ 229 (323)
T 4djd_D 161 LGN-AEQ--E---N--YKSLTAACMVHKHNIIARSPLDINI---CKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFS 229 (323)
T ss_dssp EEE-EBT--T---B--CHHHHHHHHHHTCEEEEECSSCHHH---HHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHH
T ss_pred EEE-CCc--c---c--HHHHHHHHHHhCCeEEEEccchHHH---HHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHH
Confidence 663 322 1 2 34555555544422 2224432 33444555566666666333222 24444433334
Q ss_pred HHHHhhh
Q psy15244 967 YWRKVRE 973 (1427)
Q Consensus 967 ~~~~~~~ 973 (1427)
.+...|.
T Consensus 230 ~l~~ir~ 236 (323)
T 4djd_D 230 IMERIRL 236 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.87 E-value=3.5 Score=47.69 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccc-cCcCCHHHH--------HHHHHHHHHHcCCceEEEeecCCcchHHHHHHH-HHHhcC
Q psy15244 821 YYEDLAKQLVESGAQVLCLKDM-AGLLKPTAA--------KLLIGSFREKYPNILIHVHTHDMAGTGVATTLA-CVKAGA 890 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~Dt-~G~l~P~~~--------~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~la-Ai~AGa 890 (1427)
.+.++++...++|+|.|.|.|+ +|.+.|... .++++.+++. |++|+.+||..+ ...+. -.+.|+
T Consensus 180 ~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~g~-----~~~l~~l~~~g~ 253 (338)
T 2eja_A 180 TVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFRGS-----SSFIDLAVDYRA 253 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEESSH-----HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcCCc-----HHHHHHHHHcCC
Confidence 4556777778899999999985 456788664 4556677766 688999998554 22333 346899
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
|.++.-. ..+++++...+
T Consensus 254 d~~~~d~--------~~dl~~~~~~~ 271 (338)
T 2eja_A 254 DALSVDW--------SVDIPELFKIY 271 (338)
T ss_dssp SEEECCT--------TSCHHHHHHHC
T ss_pred CEEEeCC--------CCCHHHHHHhC
Confidence 9886522 24666665555
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=81.80 E-value=7.7 Score=45.74 Aligned_cols=139 Identities=17% Similarity=0.071 Sum_probs=83.4
Q ss_pred chHHHHHHHH---HhcCCCEEEEeccC------------C------------hHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q psy15244 753 AEVGAFCRLA---SQAGIDIFRVFDPL------------N------------SVPNLVKGMDAVQQVTGGSTIVEATICY 805 (1427)
Q Consensus 753 nvv~~~v~~a---~~~Gid~~rif~~~------------n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~ 805 (1427)
.+++.|++.| .++|.|.|.|-.+. | ..+-+.+.+++++++=... .+.+-|+-
T Consensus 163 ~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~v~vrls~ 241 (377)
T 2r14_A 163 GIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPE-RVGIRLTP 241 (377)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCC-cEEEEecc
Confidence 4556666655 67899999996542 1 1234556677777653211 22222221
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCC--HH-HHHHHHHHHHHHcCCceEEEeecCCcchHHHHH
Q psy15244 806 AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLK--PT-AAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882 (1427)
Q Consensus 806 t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~--P~-~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~ 882 (1427)
. ++........+.+.+.++++.++++|+|.|.+.- |... |. .-.++++.+|+.+ ++||-.=.- .....+
T Consensus 242 ~-~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~--~~~~~~~~~~~~~~~~~ik~~~-~iPvi~~Gg----i~~~~a 313 (377)
T 2r14_A 242 F-LELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNE--PDWIGGDITYPEGFREQMRQRF-KGGLIYCGN----YDAGRA 313 (377)
T ss_dssp T-CCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEEC--CC------CCCTTHHHHHHHHC-CSEEEEESS----CCHHHH
T ss_pred c-cccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CcccCCCCcchHHHHHHHHHHC-CCCEEEECC----CCHHHH
Confidence 1 1111001245778899999999999999988853 2111 10 0135678899998 788765432 226788
Q ss_pred HHHHHhc-CCEEEeccccC
Q psy15244 883 LACVKAG-ADIVDVAADSM 900 (1427)
Q Consensus 883 laAi~AG-ad~VD~av~Gm 900 (1427)
.+++++| ||.|-.+=.-+
T Consensus 314 ~~~l~~g~aD~V~igR~~l 332 (377)
T 2r14_A 314 QARLDDNTADAVAFGRPFI 332 (377)
T ss_dssp HHHHHTTSCSEEEESHHHH
T ss_pred HHHHHCCCceEEeecHHHH
Confidence 8999998 99986554333
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=81.76 E-value=7.7 Score=45.54 Aligned_cols=138 Identities=15% Similarity=0.176 Sum_probs=83.5
Q ss_pred chHHHHHHH---HHhcCCCEEEEeccC------------C------------hHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q psy15244 753 AEVGAFCRL---ASQAGIDIFRVFDPL------------N------------SVPNLVKGMDAVQQVTGGSTIVEATICY 805 (1427)
Q Consensus 753 nvv~~~v~~---a~~~Gid~~rif~~~------------n------------d~~~~~~~i~~a~~~G~~~~~v~~~i~~ 805 (1427)
.+++.|++. |.++|.|.|.|-.+. | ..+-+.+.+++++++-... .+.+-|+-
T Consensus 158 ~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~-pv~vris~ 236 (365)
T 2gou_A 158 QVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAE-RVGVRLAP 236 (365)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGG-GEEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCC-cEEEEEcc
Confidence 345666665 478999999995532 1 1224556677777643211 12222222
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcccc--C-cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH
Q psy15244 806 AGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMA--G-LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882 (1427)
Q Consensus 806 t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~--G-~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~ 882 (1427)
.+++.+ .....+.+.+.++++.++++|+|-|.+.-.. | -..|. ++++.+|+.+ ++||-.=.-- ...++
T Consensus 237 ~~~~~~-~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~---~~~~~i~~~~-~iPvi~~Ggi----~~~~a 307 (365)
T 2gou_A 237 LTTLNG-TVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPV---SFKRALREAY-QGVLIYAGRY----NAEKA 307 (365)
T ss_dssp SCCTTS-CCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCH---HHHHHHHHHC-CSEEEEESSC----CHHHH
T ss_pred ccccCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccH---HHHHHHHHHC-CCcEEEeCCC----CHHHH
Confidence 111110 0124578889999999999999999886531 1 11222 5788899998 7887543322 25788
Q ss_pred HHHHHhc-CCEEEeccccC
Q psy15244 883 LACVKAG-ADIVDVAADSM 900 (1427)
Q Consensus 883 laAi~AG-ad~VD~av~Gm 900 (1427)
..++++| ||.|-.+=.-+
T Consensus 308 ~~~l~~g~aD~V~igR~~i 326 (365)
T 2gou_A 308 EQAINDGLADMIGFGRPFI 326 (365)
T ss_dssp HHHHHTTSCSEEECCHHHH
T ss_pred HHHHHCCCcceehhcHHHH
Confidence 8999999 99986554333
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=81.75 E-value=0.49 Score=46.07 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCceecCCCeEEEEEEecCCCEEecC-CEEEEEEcCC
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKN-DVLIVMSVMK 1392 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G-~~l~~ieamK 1392 (1427)
...|.||+.|+|.++.+++|+.|..| ++|+.|..+.
T Consensus 67 ~~~i~AP~~G~V~~~~~~~G~~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 67 HTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp EEEEECSSSEEECCCSCCTTCEECTTTSCCEEEECSC
T ss_pred CCEEEcCCCEEEEEEECCCCCEEcCCCcEEEEEECCC
Confidence 45899999999999999999999999 9999987654
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=81.72 E-value=1.6 Score=47.96 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHH--HHHHHHHHHHHc-CCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTA--AKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~--~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.|...+.+-++.+.++|+|.+.+.=|-|...|.- -..+|+.||+.+ |++++.+|.|-+.-... .-.++++|||+|
T Consensus 14 ~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~--i~~~~~aGad~i 91 (228)
T 3ovp_A 14 SDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQW--VKPMAVAGANQY 91 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGG--HHHHHHHTCSEE
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHH--HHHHHHcCCCEE
Confidence 4555677888899999999666655557654422 335788899886 78888888886543322 345778999999
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCCCCCCh
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl 927 (1427)
..-. +.+ ..+..++..++..|...++.+
T Consensus 92 tvH~----Ea~--~~~~~~i~~i~~~G~k~gval 119 (228)
T 3ovp_A 92 TFHL----EAT--ENPGALIKDIRENGMKVGLAI 119 (228)
T ss_dssp EEEG----GGC--SCHHHHHHHHHHTTCEEEEEE
T ss_pred EEcc----CCc--hhHHHHHHHHHHcCCCEEEEE
Confidence 6632 222 256778888888877666555
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.71 E-value=14 Score=41.77 Aligned_cols=171 Identities=18% Similarity=0.115 Sum_probs=107.7
Q ss_pred CCccEEecc-----CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccc-ccccCCCcchHHHHHHHHHhcCCC
Q psy15244 695 NNLYSLEMW-----GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSL-VGYSNYSPAEVGAFCRLASQAGID 768 (1427)
Q Consensus 695 ~G~~~iE~~-----ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~-vgy~~~~~nvv~~~v~~a~~~Gid 768 (1427)
.|.+.||.= ||-| ++ ...++.+++.. ++++..++|-... +=|....-+++..+|+.+.+.|.|
T Consensus 58 gGAdRIELc~~l~~GGlT---------PS-~g~i~~a~~~~-~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAd 126 (287)
T 3iwp_A 58 GGADRIELCSGLSEGGTT---------PS-MGVLQVVKQSV-QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGAD 126 (287)
T ss_dssp HTCSEEEECBCGGGTCBC---------CC-HHHHHHHHTTC-CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hCCCEEEECCCCCCCCCC---------CC-HHHHHHHHHhc-CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCC
Confidence 499999963 3333 22 34566666655 6899999986543 446666667788899999999999
Q ss_pred EEEEec----cCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccC
Q psy15244 769 IFRVFD----PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAG 844 (1427)
Q Consensus 769 ~~rif~----~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G 844 (1427)
.|.+-. ..=|++.+++.++.++..+. ++.-+-|. -.| ..+..+.+.++|+++|-- .|
T Consensus 127 GvVfG~L~~dg~iD~~~~~~Li~~a~~l~v-------TFHRAFD~------~~d---~~~Ale~Li~lGvdrILT---SG 187 (287)
T 3iwp_A 127 GLVFGALTEDGHIDKELCMSLMAICRPLPV-------TFHRAFDM------VHD---PMAALETLLTLGFERVLT---SG 187 (287)
T ss_dssp EEEECCBCTTSCBCHHHHHHHHHHHTTSCE-------EECGGGGG------CSC---HHHHHHHHHHHTCSEEEE---CT
T ss_pred EEEEeeeCCCCCcCHHHHHHHHHHcCCCcE-------EEECchhc------cCC---HHHHHHHHHHcCCCEEEC---CC
Confidence 887763 22367888888887654332 22222111 112 245667888889999874 55
Q ss_pred cCC-HHHHHHHHHHHHHHc-CCceEEEeecCCcchHHHHHHHHHH-hcCCEEEecccc
Q psy15244 845 LLK-PTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVK-AGADIVDVAADS 899 (1427)
Q Consensus 845 ~l~-P~~~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An~laAi~-AGad~VD~av~G 899 (1427)
... -.+-.++++.|.+.. ..++|-. ..|.-..|.-.-++ +|++.++.|...
T Consensus 188 ~~~~a~~Gl~~Lk~Lv~~a~~rI~Ima----GGGV~~~Ni~~l~~~tG~~~~H~S~~~ 241 (287)
T 3iwp_A 188 CDSSALEGLPLIKRLIEQAKGRIVVMP----GGGITDRNLQRILEGSGATEFHCSARS 241 (287)
T ss_dssp TSSSTTTTHHHHHHHHHHHTTSSEEEE----CTTCCTTTHHHHHHHHCCSEEEECCEE
T ss_pred CCCChHHhHHHHHHHHHHhCCCCEEEE----CCCcCHHHHHHHHHhhCCCEEeECcCc
Confidence 422 122334455555444 2466654 23555566666565 999999998643
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=81.54 E-value=14 Score=43.72 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHhhcCCccEEecc--CCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMW--GGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~--ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+.+..+++|+.+.+ +|.+.+=+. -+-|.- +.| ++-+|+.++.|++......+..+..-. .+..
T Consensus 154 s~e~a~~~a~~~k~--aGa~~vk~q~fkprts~--~~f-~gl~~egl~~L~~~~~~~Gl~~~te~~-------d~~~--- 218 (385)
T 3nvt_A 154 SYEQVAAVAESIKA--KGLKLIRGGAFKPRTSP--YDF-QGLGLEGLKILKRVSDEYGLGVISEIV-------TPAD--- 218 (385)
T ss_dssp CHHHHHHHHHHHHH--TTCCEEECBSSCCCSST--TSC-CCCTHHHHHHHHHHHHHHTCEEEEECC-------SGGG---
T ss_pred CHHHHHHHHHHHHH--cCCCeEEcccccCCCCh--Hhh-cCCCHHHHHHHHHHHHHcCCEEEEecC-------CHHH---
Confidence 67788899999998 798877543 222211 112 234567777777665433333333211 1222
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
++.+.+. +|++.|-.... .|. ..++++.+.|+ -+ +.-+| .-.+++.+...++.+.+.|.+.
T Consensus 219 --~~~l~~~-vd~lkIgs~~~--~n~-~LL~~~a~~gk---PV---ilk~G-------~~~t~~e~~~Ave~i~~~Gn~~ 279 (385)
T 3nvt_A 219 --IEVALDY-VDVIQIGARNM--QNF-ELLKAAGRVDK---PI---LLKRG-------LSATIEEFIGAAEYIMSQGNGK 279 (385)
T ss_dssp --HHHHTTT-CSEEEECGGGT--TCH-HHHHHHHTSSS---CE---EEECC-------TTCCHHHHHHHHHHHHTTTCCC
T ss_pred --HHHHHhh-CCEEEECcccc--cCH-HHHHHHHccCC---cE---EEecC-------CCCCHHHHHHHHHHHHHcCCCe
Confidence 5556666 99988876542 221 33445566777 22 22232 1278999999999999999987
Q ss_pred EEEccc--cCcCC-HHHHHH--HHHHHHHHcCCceEEE-eecC--CcchHHHHHHHHHHhcCC--EEEe
Q psy15244 837 LCLKDM--AGLLK-PTAAKL--LIGSFREKYPNILIHV-HTHD--MAGTGVATTLACVKAGAD--IVDV 895 (1427)
Q Consensus 837 i~i~Dt--~G~l~-P~~~~~--lv~~lr~~~p~ipi~~-H~Hn--d~GlA~An~laAi~AGad--~VD~ 895 (1427)
|.|+.- ...-+ |....+ -+..+|+.+ ++||-+ |+|. +..+-...++||+.+||+ +|+.
T Consensus 280 i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~-~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~ 347 (385)
T 3nvt_A 280 IILCERGIRTYEKATRNTLDISAVPILKKET-HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV 347 (385)
T ss_dssp EEEEECCBCCSCCSSSSBCCTTHHHHHHHHB-SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred EEEEECCCCCCCCCCccccCHHHHHHHHHhc-CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence 778774 22211 211111 266788887 788733 8885 234445678999999999 8876
|
| >2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=81.53 E-value=1.1 Score=52.24 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=38.6
Q ss_pred EEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEE-----------------------------ecCCCeeCCCC
Q psy15244 1370 EVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF-----------------------------VEVGGQVAQND 1420 (1427)
Q Consensus 1370 ~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~-----------------------------v~~G~~V~~g~ 1420 (1427)
+++|++|+.|++||.|+.=. +|.|..+|+|.+.. |+.|+.|.+||
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~ 135 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL 135 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTC
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCc
Confidence 47899999999999999866 78888888875433 67788888888
Q ss_pred EEE
Q psy15244 1421 LVV 1423 (1427)
Q Consensus 1421 ~L~ 1423 (1427)
+|+
T Consensus 136 vla 138 (352)
T 2xhc_A 136 PLS 138 (352)
T ss_dssp BSB
T ss_pred EEe
Confidence 764
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=81.48 E-value=18 Score=41.88 Aligned_cols=132 Identities=23% Similarity=0.214 Sum_probs=81.8
Q ss_pred HHHHHH---HHHhcCCCEEEEeccC------------C--------hH----HHHHHHHHHHHHhcCCCcEEEEEEEeec
Q psy15244 755 VGAFCR---LASQAGIDIFRVFDPL------------N--------SV----PNLVKGMDAVQQVTGGSTIVEATICYAG 807 (1427)
Q Consensus 755 v~~~v~---~a~~~Gid~~rif~~~------------n--------d~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~ 807 (1427)
++.|.+ +|.++|.|.|.|-.+- | ++ +-+.+.+++++++-. ..+.+-|+-.
T Consensus 143 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~--~pv~vRls~~- 219 (340)
T 3gr7_A 143 VQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWD--GPLFVRISAS- 219 (340)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCC--SCEEEEEESC-
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcC--CceEEEeccc-
Confidence 444444 4556899999887652 2 12 234567777776531 1333333322
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcccc--Cc---CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHH
Q psy15244 808 DLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMA--GL---LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATT 882 (1427)
Q Consensus 808 d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~--G~---l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~ 882 (1427)
|+. + ...+.+.+.++++.++++|+|.|.+.+.. .. ..|..-.++++.+|+.+ ++||-.=.--+ ....+
T Consensus 220 ~~~-~--~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~---s~e~a 292 (340)
T 3gr7_A 220 DYH-P--DGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA-DIPTGAVGLIT---SGWQA 292 (340)
T ss_dssp CCS-T--TSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEESSCC---CHHHH
T ss_pred ccc-C--CCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc-CCcEEeeCCCC---CHHHH
Confidence 221 1 24677889999999999999999986521 10 11222356788999998 88876543221 24567
Q ss_pred HHHHHhc-CCEEEec
Q psy15244 883 LACVKAG-ADIVDVA 896 (1427)
Q Consensus 883 laAi~AG-ad~VD~a 896 (1427)
.+++++| ||.|-..
T Consensus 293 ~~~L~~G~aD~V~iG 307 (340)
T 3gr7_A 293 EEILQNGRADLVFLG 307 (340)
T ss_dssp HHHHHTTSCSEEEEC
T ss_pred HHHHHCCCeeEEEec
Confidence 7889999 9988554
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=81.48 E-value=30 Score=37.55 Aligned_cols=182 Identities=11% Similarity=0.119 Sum_probs=98.7
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++..++++...+ .|+.++-+..+ .++..++...++++.... + -..|. ......-.
T Consensus 17 ~t~~~i~~l~~~a~~--~g~~~v~v~~~----------------~v~~~~~~l~~v~v~~v~-~-~P~g~--~~~~~k~~ 74 (225)
T 1mzh_A 17 LSEKEIEEFVLKSEE--LGIYAVCVNPY----------------HVKLASSIAKKVKVCCVI-G-FPLGL--NKTSVKVK 74 (225)
T ss_dssp CCHHHHHHHHHHHHH--TTCSEEEECGG----------------GHHHHHHHCSSSEEEEEE-S-TTTCC--SCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCeEEEECHH----------------HHHHHHHHhcCCceeeEe-c-CCCCc--cchhhhHH
Confidence 677888888888777 58877654321 122222222223222111 1 01111 11111223
Q ss_pred HHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 758 FCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
.++.|.+.|.|.+.+....+. .+.+..-++.++++.. +..+.. .+- .+ ..+.+.+.++++.+.++
T Consensus 75 ~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKv--i~e----~~---~l~~~~~~~~a~~a~ea 144 (225)
T 1mzh_A 75 EAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKV--IVE----TP---YLNEEEIKKAVEICIEA 144 (225)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEE--ECC----GG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEE--EEe----CC---CCCHHHHHHHHHHHHHh
Confidence 457889999999996554443 2344445677776543 223222 111 12 36778899999999999
Q ss_pred CCCEEEEccccCcCCHHHHHHHHHHHHHHcC-CceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 833 GAQVLCLKDMAGLLKPTAAKLLIGSFREKYP-NILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p-~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
|+|.|.. .| |...+-...+.++.+++..+ ++||-.=.=-.. ...+++.+++||+.|-++
T Consensus 145 Gad~I~t-st-g~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t---~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 145 GADFIKT-ST-GFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRD---LETAISMIEAGADRIGTS 204 (225)
T ss_dssp TCSEEEC-CC-SCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCS---HHHHHHHHHTTCSEEEES
T ss_pred CCCEEEE-CC-CCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCC---HHHHHHHHHhCchHHHHc
Confidence 9999932 33 32221122234455555542 577654332222 366777788999977443
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=81.39 E-value=31 Score=40.44 Aligned_cols=130 Identities=18% Similarity=0.115 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhc--CCCEEEEeccCC---------hHHHHHHHHHHHHHh--------cCCCcEEEEEEEeeccCCCCCC
Q psy15244 754 EVGAFCRLASQA--GIDIFRVFDPLN---------SVPNLVKGMDAVQQV--------TGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 754 vv~~~v~~a~~~--Gid~~rif~~~n---------d~~~~~~~i~~a~~~--------G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
....+++.+... +.|.|-|-.++- +.+.+.+.++.++++ .. -+.+ -. .|+
T Consensus 162 ~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~---Pv~v--Ki-----~p~- 230 (367)
T 3zwt_A 162 AAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRP---AVLV--KI-----APD- 230 (367)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCC---EEEE--EE-----CSC-
T ss_pred CHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCc---eEEE--Ee-----CCC-
Confidence 355555544443 478888776643 234555666655543 22 1211 11 443
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcccc---------------CcCC----HHHHHHHHHHHHHHcC-CceEEEeecCC
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVLCLKDMA---------------GLLK----PTAAKLLIGSFREKYP-NILIHVHTHDM 874 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~---------------G~l~----P~~~~~lv~~lr~~~p-~ipi~~H~Hnd 874 (1427)
.+.+.+.++++.++++|+|.|.+-.|. |.+. +....++|+.+++.++ ++||-.=.-=.
T Consensus 231 --~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~ 308 (367)
T 3zwt_A 231 --LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVS 308 (367)
T ss_dssp --CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCC
T ss_pred --CCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCC
Confidence 567889999999999999999987664 2222 2335688999999986 78876654444
Q ss_pred cchHHHHHHHHHHhcCCEEEecccc
Q psy15244 875 AGTGVATTLACVKAGADIVDVAADS 899 (1427)
Q Consensus 875 ~GlA~An~laAi~AGad~VD~av~G 899 (1427)
.+ ..+.+++++|||.|...-.=
T Consensus 309 s~---~da~~~l~~GAd~V~vgra~ 330 (367)
T 3zwt_A 309 SG---QDALEKIRAGASLVQLYTAL 330 (367)
T ss_dssp SH---HHHHHHHHHTCSEEEESHHH
T ss_pred CH---HHHHHHHHcCCCEEEECHHH
Confidence 33 45677778999999876543
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=81.29 E-value=5.9 Score=43.38 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
+|.+..+++.+.+.|+|.+.+..... .+.|+.+++.+++.|. .+.+ ++-+ ++++....-.+++..+++...+
T Consensus 77 pnTv~~~~~~~~~~gad~vtvh~~~G-~~~l~~~~~~~~~~g~---~v~v-Lt~~---s~~~~~~~~~~~~~~~a~~a~~ 148 (228)
T 3m47_A 77 PETNEKICRATFKAGADAIIVHGFPG-ADSVRACLNVAEEMGR---EVFL-LTEM---SHPGAEMFIQGAADEIARMGVD 148 (228)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESTTC-HHHHHHHHHHHHHHTC---EEEE-ECCC---CSGGGGTTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCCCEEEEeccCC-HHHHHHHHHHHHhcCC---CeEE-EEeC---CCccHHHHHHHHHHHHHHHHHH
Confidence 45577789999999999988866543 5678888999988886 4322 2222 3443211113667788888889
Q ss_pred CCCCEEEEccccCcCCHHHHHHHHHHHHHHcCC-ceEEEeecCCcchHH--HHHHHHHHhcCCEEEe
Q psy15244 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGTGV--ATTLACVKAGADIVDV 895 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~-ipi~~H~Hnd~GlA~--An~laAi~AGad~VD~ 895 (1427)
.|.+-+.. |...|+++. .+|+..|+ .++-. -|.+. ++. .++++|+|++=+
T Consensus 149 ~G~~GvV~----~at~~~e~~----~ir~~~~~~~~iv~-----PGI~~~g~~p-~~~~aGad~iVv 201 (228)
T 3m47_A 149 LGVKNYVG----PSTRPERLS----RLREIIGQDSFLIS-----PGVGAQGGDP-GETLRFADAIIV 201 (228)
T ss_dssp TTCCEEEC----CSSCHHHHH----HHHHHHCSSSEEEE-----CC----------CGGGTCSEEEE
T ss_pred hCCcEEEE----CCCChHHHH----HHHHhcCCCCEEEe-----cCcCcCCCCH-hHHHcCCCEEEE
Confidence 99986442 334566554 45555543 44311 12111 245 889999997644
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=81.23 E-value=7.6 Score=42.97 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=57.7
Q ss_pred EEEEEc-CCHHHHHHHHHHHHc-CCEEEEEecCCCccCcc-ccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 59 KILIAN-RSEVAIRVARACNEM-GIKSVGIYSEQDKFSAH-RTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 59 kVLIag-rGeia~riiraa~el-Gi~~vav~s~~d~~s~~-~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
||+|+| .|.++..+++++.+. |++++++....+..... ...+|-.+... .| ......+..|.+++++.|+
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT---~p----~a~~~~~~~a~~~g~~~Vi 74 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFT---HP----DVVMGNLEFLIDNGIHAVV 74 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECS---CT----TTHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEcc---Ch----HHHHHHHHHHHHcCCCEEE
Confidence 899999 599999999999876 99998776543321111 11345443332 11 2356777788888888888
Q ss_pred eCCCcccccH-HHHHHHHHC-CCc
Q psy15244 136 PGYGFLSERE-DFAKAVIGA-GLE 157 (1427)
Q Consensus 136 pg~gflsE~~-~~a~~~e~~-Gi~ 157 (1427)
-..|+..|.. .+.+++++. +++
T Consensus 75 gTTG~~~e~~~~l~~aa~~~~~~~ 98 (245)
T 1p9l_A 75 GTTGFTAERFQQVESWLVAKPNTS 98 (245)
T ss_dssp CCCCCCHHHHHHHHHHHHTSTTCE
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCC
Confidence 6667554422 344455544 554
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=81.14 E-value=16 Score=38.75 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=66.3
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccc
Q psy15244 765 AGIDIFRVFDPLNSVPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDM 842 (1427)
Q Consensus 765 ~Gid~~rif~~~nd~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt 842 (1427)
.|+|++-+-.+.+ +..-...++.+++. +. .+...+.+. ...++ .++.+.++|+|.+.+-+.
T Consensus 24 ~~~diie~G~p~~-~~~g~~~i~~ir~~~~~~---~i~~~~~~~----------~~~~~---~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 24 DDVDIIEVGTPFL-IREGVNAIKAIKEKYPHK---EVLADAKIM----------DGGHF---ESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp GGCSEEEECHHHH-HHHTTHHHHHHHHHCTTS---EEEEEEEEC----------SCHHH---HHHHHHHTTCSEEEEETT
T ss_pred cCccEEEeCcHHH-HhccHHHHHHHHHhCCCC---EEEEEEEec----------cchHH---HHHHHHhcCCCEEEEeCC
Confidence 5888877765321 22223456666665 44 443333332 22333 377888999999999876
Q ss_pred cCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 843 AGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 843 ~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+ .....++++.+++. ++++.+-.++- ......+..+.++|+|+|-+.
T Consensus 87 ~~---~~~~~~~~~~~~~~--g~~~~v~~~~~-~t~~~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 87 TD---VLTIQSCIRAAKEA--GKQVVVDMICV-DDLPARVRLLEEAGADMLAVH 134 (211)
T ss_dssp SC---HHHHHHHHHHHHHH--TCEEEEECTTC-SSHHHHHHHHHHHTCCEEEEE
T ss_pred CC---hhHHHHHHHHHHHc--CCeEEEEecCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 53 45667888888765 56665433321 123445678889999998543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=81.01 E-value=3.1 Score=46.65 Aligned_cols=72 Identities=13% Similarity=-0.033 Sum_probs=48.5
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcC-CEEEEEecCCCccCcccccc--c-eEEEcCCCCCcccCCCCHHHHHHHHHhcCC
Q psy15244 57 MEKILIANR-SEVAIRVARACNEMG-IKSVGIYSEQDKFSAHRTKV--D-QAFLVGKGMPPVAAYLNIPEIICIAKNNNV 131 (1427)
Q Consensus 57 ~kkVLIagr-Geia~riiraa~elG-i~~vav~s~~d~~s~~~~~a--D-e~~~i~~~~~~~~~yldi~~Ii~ia~~~~v 131 (1427)
+++|||.|. |.++..+++.+.+.| ++++++..+++.... ..+. . +.+. .++.|.+.+.++.+ ++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~-~~l~~~~~~~~~--------~D~~d~~~l~~~~~--~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-KELRLQGAEVVQ--------GDQDDQVIMELALN--GA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH-HHHHHTTCEEEE--------CCTTCHHHHHHHHT--TC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH-HHHHHCCCEEEE--------ecCCCHHHHHHHHh--cC
Confidence 579999994 999999999999999 999888765543110 0010 1 1222 23566777777665 58
Q ss_pred CEEEeCCC
Q psy15244 132 DAIHPGYG 139 (1427)
Q Consensus 132 DaI~pg~g 139 (1427)
|.|+-..+
T Consensus 74 d~vi~~a~ 81 (299)
T 2wm3_A 74 YATFIVTN 81 (299)
T ss_dssp SEEEECCC
T ss_pred CEEEEeCC
Confidence 99887655
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=80.75 E-value=5.9 Score=44.76 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=90.9
Q ss_pred EEEEEEeeccCCCCCCC---CCCHHHHHHHHHHHHHCCCCEEEE----ccccCcCCHHHHHHHHHHHHHHcCCceEEEee
Q psy15244 799 VEATICYAGDLTNPNKK---KYSLNYYEDLAKQLVESGAQVLCL----KDMAGLLKPTAAKLLIGSFREKYPNILIHVHT 871 (1427)
Q Consensus 799 v~~~i~~t~d~~~p~~~---~~~~~~~~~~a~~l~~~Gad~i~i----~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~ 871 (1427)
+-.+.+-||-...++.+ ..+++.+.+-+.++.++||.++-+ .|-...+.|....+++.++|++.|++.|.+-+
T Consensus 10 viIt~A~tGa~~t~~~~P~lPvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TT 89 (282)
T 2y7e_A 10 LILTAAITGAETTRADQPNLPITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQIST 89 (282)
T ss_dssp BCEEEECSCSSCCTTTCTTCCCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred eEEEEccCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCC
Confidence 34455667655333332 369999999999999999976544 44456789999999999999998899999988
Q ss_pred cCCcchHHHHHHHHHHhcCCEEEeccccCCCCC---CCC--cHHHHHHHHHhCCCCCC---CChhhHH
Q psy15244 872 HDMAGTGVATTLACVKAGADIVDVAADSMSGIC---SQP--AMGTIVSCLENTDKRCG---IDLHDVC 931 (1427)
Q Consensus 872 Hnd~GlA~An~laAi~AGad~VD~av~GmG~~t---gn~--~lE~vv~~L~~~g~~tg---idl~~L~ 931 (1427)
.-..+....--++.++..-++...+++.|--.. -|+ .++.++..++..|..+. +|...|.
T Consensus 90 g~~~~~~~eeR~~~~~~~Pe~asl~~gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~ 157 (282)
T 2y7e_A 90 GGAVGESFDKRLAPLALKPEMATLNAGTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVD 157 (282)
T ss_dssp SCSTTCCHHHHHGGGGGCCSEEEEECCCEEETTEEECCCHHHHHHHHHHHHHTTCEEEEEECSHHHHH
T ss_pred CCCCCCCHHHHHHHhhcCCCEEEecccccccccccccCCHHHHHHHHHHHHHcCCeEEEEEECHHHHH
Confidence 655443556666666667788766654432211 132 46788888888776543 4553333
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=5.6 Score=44.92 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=74.0
Q ss_pred HHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q psy15244 759 CRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLC 838 (1427)
Q Consensus 759 v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~ 838 (1427)
++.+.+. +|++.|-... ++|.. .++++...|+ -+ +.-+|- -.+++.+...++.+.+.|.+.|.
T Consensus 104 v~~l~~~-vd~lqIgA~~--~~n~~-LLr~va~~gk---PV---ilK~G~-------~~t~~ei~~ave~i~~~Gn~~i~ 166 (285)
T 3sz8_A 104 AAPVAEI-ADVLQVPAFL--ARQTD-LVVAIAKAGK---PV---NVKKPQ-------FMSPTQLKHVVSKCGEVGNDRVM 166 (285)
T ss_dssp HHHHHTT-CSEEEECGGG--TTCHH-HHHHHHHTSS---CE---EEECCT-------TSCGGGTHHHHHHHHHTTCCCEE
T ss_pred HHHHHHh-CCEEEECccc--cCCHH-HHHHHHccCC---cE---EEeCCC-------CCCHHHHHHHHHHHHHcCCCcEE
Confidence 4555566 8877775532 22222 3334445677 22 222320 14677778888899999998888
Q ss_pred EccccCcCCHHHH----HHHHHHHHHHcCCceEEE-eecCC----------cc---hHHHHHHHHHHhcCC--EEEecc
Q psy15244 839 LKDMAGLLKPTAA----KLLIGSFREKYPNILIHV-HTHDM----------AG---TGVATTLACVKAGAD--IVDVAA 897 (1427)
Q Consensus 839 i~Dt~G~l~P~~~----~~lv~~lr~~~p~ipi~~-H~Hnd----------~G---lA~An~laAi~AGad--~VD~av 897 (1427)
|+.-.-.. |..- ..-+..+|+.+|++||.+ ++|-. .| +-...++||+.+||+ +|+.=.
T Consensus 167 L~erg~~y-~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~ 244 (285)
T 3sz8_A 167 LCERGSSF-GYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHP 244 (285)
T ss_dssp EEECCEEC-SSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEES
T ss_pred EEeCCCCC-CCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEecc
Confidence 87643221 2211 223667898987799999 88863 23 226678899999999 776544
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=5.1 Score=45.81 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=46.5
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCE
Q psy15244 55 KTMEKILIANR-SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDA 133 (1427)
Q Consensus 55 ~~~kkVLIagr-Geia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDa 133 (1427)
...++|||.|. |.++..+++.+.+.|++++++....... . -+.+. .+..+.+.+.++++ ++|+
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-----~-~~~~~--------~Dl~d~~~~~~~~~--~~d~ 80 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGT-----G-GEEVV--------GSLEDGQALSDAIM--GVSA 80 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSS-----C-CSEEE--------SCTTCHHHHHHHHT--TCSE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCC-----C-ccEEe--------cCcCCHHHHHHHHh--CCCE
Confidence 34679999995 9999999999999999999887654420 0 01222 23456777777766 7998
Q ss_pred EEeCCC
Q psy15244 134 IHPGYG 139 (1427)
Q Consensus 134 I~pg~g 139 (1427)
|+-.-+
T Consensus 81 vih~A~ 86 (347)
T 4id9_A 81 VLHLGA 86 (347)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 886543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=80.60 E-value=8.3 Score=44.03 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHH-----HhcC
Q psy15244 57 MEKILIANR-SEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIA-----KNNN 130 (1427)
Q Consensus 57 ~kkVLIagr-Geia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia-----~~~~ 130 (1427)
|.||.|+|- |.++.+.++++++.+.+++++++...... .+.+.+ .....|.+.+++++.+ ...+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~----~~~~~~------~~~~~~~~~~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG----LVDSFF------PEAEFFTEPEAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG----GGGGTC------TTCEEESCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH----HHHhhC------CCCceeCCHHHHHHHhhhhcccCCC
Confidence 569999997 77999999999999999998875433211 111111 1234577888888765 4578
Q ss_pred CCEEEeCCCcccccHHHHHHHHHCCCcee
Q psy15244 131 VDAIHPGYGFLSEREDFAKAVIGAGLEFI 159 (1427)
Q Consensus 131 vDaI~pg~gflsE~~~~a~~~e~~Gi~fi 159 (1427)
+|+|+-..-. ....+++..+.++|..++
T Consensus 73 vD~V~I~tP~-~~H~~~~~~al~aGkhVl 100 (312)
T 3o9z_A 73 VDYLSIASPN-HLHYPQIRMALRLGANAL 100 (312)
T ss_dssp CSEEEECSCG-GGHHHHHHHHHHTTCEEE
T ss_pred CcEEEECCCc-hhhHHHHHHHHHCCCeEE
Confidence 9999866432 234566777777787655
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
Probab=80.56 E-value=2.7 Score=49.31 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcc-ccCcCCHHH--------HHHHHHHHH-HHcC----CceEEEeecCCcchHHHHHHHHH
Q psy15244 821 YYEDLAKQLVESGAQVLCLKD-MAGLLKPTA--------AKLLIGSFR-EKYP----NILIHVHTHDMAGTGVATTLACV 886 (1427)
Q Consensus 821 ~~~~~a~~l~~~Gad~i~i~D-t~G~l~P~~--------~~~lv~~lr-~~~p----~ipi~~H~Hnd~GlA~An~laAi 886 (1427)
...++++...++|||.|.|.| .+|.+.|.. ..++++.++ +..| ++|+.+|+.++ +.-+. .-.
T Consensus 198 ~~~~~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~-~~~l~---~l~ 273 (367)
T 1r3s_A 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG-HFALE---ELA 273 (367)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC-GGGHH---HHT
T ss_pred HHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc-HHHHH---HHH
Confidence 455677777889999999998 566778865 345567777 5544 58999998876 43222 334
Q ss_pred HhcCCEEEeccccCCCCCCCCcHHHHHHHH
Q psy15244 887 KAGADIVDVAADSMSGICSQPAMGTIVSCL 916 (1427)
Q Consensus 887 ~AGad~VD~av~GmG~~tgn~~lE~vv~~L 916 (1427)
+.|+|+++.-. ..++.++...+
T Consensus 274 ~~g~d~i~~d~--------~~dl~~a~~~~ 295 (367)
T 1r3s_A 274 QAGYEVVGLDW--------TVAPKKARECV 295 (367)
T ss_dssp TSSCSEEECCT--------TSCHHHHHHHH
T ss_pred hcCCCEEEeCC--------CCCHHHHHHHc
Confidence 68999986531 24566655544
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=80.53 E-value=24 Score=40.50 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=108.5
Q ss_pred eEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHH----HHHhCCCCc
Q psy15244 659 ILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAE----LRELIPNIP 734 (1427)
Q Consensus 659 v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~----lr~~~p~~~ 734 (1427)
+.+|--+|=||.+. ++.+..++.|..+-+ .|.+.|++||-+|--.+-.--.++.|+|+.. |++.. +++
T Consensus 16 lNvTPDSFsdgg~~-----~~~~~a~~~a~~~v~--~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~-~vp 87 (314)
T 2vef_A 16 INVTPDSFSDGGQF-----FALEQALQQARKLIA--EGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES-DVL 87 (314)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHH--TTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCE
T ss_pred EeCCCCCCCCCCCC-----CCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-Cce
Confidence 34555557788752 467888888888877 7999999998554221111112345666543 34332 444
Q ss_pred eeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 735 FQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 735 ~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
++.= .+ .-+.+++|+++|.++|.=....+.-++| .+.+++.|. -+ .++....-+.|..
T Consensus 88 iSID----------T~----~~~Va~aAl~aGa~iINDVsg~~~d~~m---~~v~a~~~~---~v--vlmh~~~~g~p~~ 145 (314)
T 2vef_A 88 ISID----------TW----KSQVAEAALAAGADLVNDITGLMGDEKM---PHVVAEARA---QV--VIMFNPVMARPQH 145 (314)
T ss_dssp EEEE----------CS----CHHHHHHHHHTTCCEEEETTTTCSCTTH---HHHHHHHTC---EE--EEECCHHHHCTTS
T ss_pred EEEe----------CC----CHHHHHHHHHcCCCEEEECCCCCCChHH---HHHHHHcCC---CE--EEEecCCCCCCCC
Confidence 4431 12 2334778888999998655444321333 344566776 22 1121100001211
Q ss_pred CC--------------------C------C--HHHHHHHHHHHHHCCCC--EEEEccc-cCc-CCHHHHHHHHHHHHHHc
Q psy15244 815 KK--------------------Y------S--LNYYEDLAKQLVESGAQ--VLCLKDM-AGL-LKPTAAKLLIGSFREKY 862 (1427)
Q Consensus 815 ~~--------------------~------~--~~~~~~~a~~l~~~Gad--~i~i~Dt-~G~-l~P~~~~~lv~~lr~~~ 862 (1427)
.. | + .+++.+.++.+.++|+. .|. -|. .|. -+.++-.++++.|++-.
T Consensus 146 ~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~Ii-lDPGiGF~kt~~~nl~ll~~l~~l~ 224 (314)
T 2vef_A 146 PSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIAPENIL-LDPGIGFGLTKKENLLLLRDLDKLH 224 (314)
T ss_dssp TTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGEE-EECCTTSSCCHHHHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCChhhEE-EeCCCCcccchHHHHHHHHHHHHhh
Confidence 00 0 0 34566777888889984 454 465 343 34456777888887653
Q ss_pred -CCceEEEeecCC------------------------cchH-HHHHHHHHHhcCCEEEec
Q psy15244 863 -PNILIHVHTHDM------------------------AGTG-VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 863 -p~ipi~~H~Hnd------------------------~GlA-~An~laAi~AGad~VD~a 896 (1427)
++.|+-+=.-|- ...+ .|.+..|++.||++|.+-
T Consensus 225 ~~g~PvL~G~SrKsfig~~~~~~g~~~~p~tel~~~~R~~~t~a~~~~a~~~Ga~IvRvH 284 (314)
T 2vef_A 225 QKGYPIFLGVSRKRFVINILEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVH 284 (314)
T ss_dssp TTSSCBEEECSSCHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHHHTTCSEEEES
T ss_pred cCCCCEEEEeCccHHHhhhhccccccCCcccccchhhhhHHHHHHHHHHHHcCCcEEEeC
Confidence 578865533331 1122 345567889999998764
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=80.53 E-value=24 Score=38.88 Aligned_cols=157 Identities=12% Similarity=0.096 Sum_probs=106.4
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCChH---HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCC-CCCCCHHHHHHH
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNSV---PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPN-KKKYSLNYYEDL 825 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd~---~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~-~~~~~~~~~~~~ 825 (1427)
++....+.+++.|.+. ||.+.+.-..+.+ +.+++-|+.++++|. . .|+|...-+. -.+- .+-++
T Consensus 23 lg~~~~~d~Le~~g~y-ID~lKfg~Gt~~l~~~~~l~eki~l~~~~gV---~-----v~~GGTl~E~~~~qg---~~~~y 90 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGDY-IDFVKFGWGTSAVIDRDVVKEKINYYKDWGI---K-----VYPGGTLFEYAYSKG---KFDEF 90 (251)
T ss_dssp CCHHHHHHHHHHHGGG-CSEEEECTTGGGGSCHHHHHHHHHHHHTTTC---E-----EEECHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHhhhh-cceEEecCceeeecCHHHHHHHHHHHHHcCC---e-----EECCcHHHHHHHHcC---cHHHH
Confidence 4555566677665554 9999998777754 579999999999998 3 2444311111 0112 34455
Q ss_pred HHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHH-cCCceEEEeec-------CCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 826 AKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREK-YPNILIHVHTH-------DMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~-~p~ipi~~H~H-------nd~GlA~An~laAi~AGad~VD~av 897 (1427)
.+.+.+.|.+.|-|.|-.--+.++.-.++|+.+++. + .+--++..- .+...-+..+...++|||+.|=+=-
T Consensus 91 l~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~-~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEa 169 (251)
T 1qwg_A 91 LNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGF-MVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEG 169 (251)
T ss_dssp HHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTC-EEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCC-EEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 556667799999999999999999999999999987 3 222233322 2334556677889999999875544
Q ss_pred c------cCCCCCCCCcHHHHHHHHHhC
Q psy15244 898 D------SMSGICSQPAMGTIVSCLENT 919 (1427)
Q Consensus 898 ~------GmG~~tgn~~lE~vv~~L~~~ 919 (1427)
- |+=+..|+.-...+-..+...
T Consensus 170 rEsG~~iGi~~~~g~~r~d~v~~i~~~l 197 (251)
T 1qwg_A 170 RESGKGKGLFDKEGKVKENELDVLAKNV 197 (251)
T ss_dssp TTTCCSSTTBCTTSCBCHHHHHHHHTTS
T ss_pred ecccCCcccCCCCCCCcHHHHHHHHHhC
Confidence 3 666777888877665555443
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=80.45 E-value=13 Score=42.08 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=80.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccccC---cCCHHHHHHHHHHHHHHc-CCceEEEee-cCCcchHHHHHHHHHHhc
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVLCLKDMAG---LLKPTAAKLLIGSFREKY-PNILIHVHT-HDMAGTGVATTLACVKAG 889 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G---~l~P~~~~~lv~~lr~~~-p~ipi~~H~-Hnd~GlA~An~laAi~AG 889 (1427)
...|.+-+.++++.+.+.|+|-|.++-|+| .|+.++-.++++...+.. +.+||-.|+ +|+..-++..+..|.++|
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G 96 (291)
T 3tak_A 17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLG 96 (291)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999 478888899999988876 368888876 678888889999999999
Q ss_pred CCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 890 ADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 890 ad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
||.+=+..--+. .|+-+.++..++
T Consensus 97 adavlv~~P~y~----~~~~~~l~~~f~ 120 (291)
T 3tak_A 97 ADAALLVTPYYN----KPTQEGLYQHYK 120 (291)
T ss_dssp CSEEEEECCCSS----CCCHHHHHHHHH
T ss_pred CCEEEEcCCCCC----CCCHHHHHHHHH
Confidence 999866543332 245566666655
|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
Probab=80.42 E-value=57 Score=35.80 Aligned_cols=135 Identities=8% Similarity=-0.009 Sum_probs=76.7
Q ss_pred chHHHHHHHHHhcCCCEEEEec----cC-------Ch-------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCC
Q psy15244 753 AEVGAFCRLASQAGIDIFRVFD----PL-------NS-------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNK 814 (1427)
Q Consensus 753 nvv~~~v~~a~~~Gid~~rif~----~~-------nd-------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~ 814 (1427)
+..+..++.|.+.|++.+.+.. .. +. .+.+....+.+++.|. .+ ++..... .+..
T Consensus 88 ~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l--~lEn~~~--~~~~ 160 (290)
T 2qul_A 88 EYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGI---IY--ALEVVNR--FEQW 160 (290)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTC---EE--EEECCCT--TTCS
T ss_pred HHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCC---EE--EEEeCcc--cccc
Confidence 4466788889999999988642 11 11 2456667777888887 22 2222110 0111
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEE-EEccccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 815 KKYSLNYYEDLAKQLVESGAQVL-CLKDMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 815 ~~~~~~~~~~~a~~l~~~Gad~i-~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.-.+.+.+.++++.+ |...+ ..-|+.=...- -.+....+++. .+--.++|.||..+
T Consensus 161 ~~~~~~~~~~l~~~~---~~~~~g~~~D~~h~~~~--g~d~~~~l~~~-~~~i~~vH~~D~~~----------------- 217 (290)
T 2qul_A 161 LCNDAKEAIAFADAV---DSPACKVQLDTFHMNIE--ETSFRDAILAC-KGKMGHFHLGEANR----------------- 217 (290)
T ss_dssp SCCSHHHHHHHHHHH---CCTTEEEEEEHHHHHHH--CSCHHHHHHHT-TTTEEEEEECCTTS-----------------
T ss_pred ccCCHHHHHHHHHHc---CCCCEEEEEEchhhhhc--CCCHHHHHHHH-HhheeEEEEccCCC-----------------
Confidence 235777777777554 33222 23366322110 01223334433 35567999998742
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhCCCCC
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
..+| .|..+...++..|+..|++-
T Consensus 218 ----~~~G--~G~id~~~~~~~L~~~gy~g 241 (290)
T 2qul_A 218 ----LPPG--EGRLPWDEIFGALKEIGYDG 241 (290)
T ss_dssp ----CCTT--SSCSCHHHHHHHHHHTTCCS
T ss_pred ----CCCC--CCCcCHHHHHHHHHHhCCCc
Confidence 1233 47789999999999887753
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=80.38 E-value=16 Score=42.40 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=48.7
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
++++|||.| .|.++..+++.+.+.|++++++..............-+.+. .+..+.+.+.++.+ ++|+|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~--------~Dl~d~~~~~~~~~--~~d~V 97 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHL--------VDLRVMENCLKVTE--GVDHV 97 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEE--------CCTTSHHHHHHHHT--TCSEE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEE--------CCCCCHHHHHHHhC--CCCEE
Confidence 467999999 49999999999999999998887654432111000011222 12455667766664 79988
Q ss_pred EeCCC
Q psy15244 135 HPGYG 139 (1427)
Q Consensus 135 ~pg~g 139 (1427)
+-..+
T Consensus 98 ih~A~ 102 (379)
T 2c5a_A 98 FNLAA 102 (379)
T ss_dssp EECCC
T ss_pred EECce
Confidence 86655
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=80.36 E-value=9.4 Score=43.09 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCC-CccCccc--c---c-cceEEEcCCCCCcccCCCCHHHHHHHHH
Q psy15244 56 TMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQ-DKFSAHR--T---K-VDQAFLVGKGMPPVAAYLNIPEIICIAK 127 (1427)
Q Consensus 56 ~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~-d~~s~~~--~---~-aDe~~~i~~~~~~~~~yldi~~Ii~ia~ 127 (1427)
+|++|||.| .|.++..+++.+.+.|++++++..+. +...... . + ......+ ..++.|.+.+.++.+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v------~~D~~d~~~l~~a~~ 76 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTII------EGEMEEHEKMVSVLK 76 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEE------ECCTTCHHHHHHHHT
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEE------EecCCCHHHHHHHHc
Confidence 466899999 59999999999999999988886554 2100000 0 0 0111111 124567778777776
Q ss_pred hcCCCEEEeCCCccc--ccHHHHHHHHHCC-Cc
Q psy15244 128 NNNVDAIHPGYGFLS--EREDFAKAVIGAG-LE 157 (1427)
Q Consensus 128 ~~~vDaI~pg~gfls--E~~~~a~~~e~~G-i~ 157 (1427)
++|+|+-..+... ....+.+++.+.| +.
T Consensus 77 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~ 107 (321)
T 3c1o_A 77 --QVDIVISALPFPMISSQIHIINAIKAAGNIK 107 (321)
T ss_dssp --TCSEEEECCCGGGSGGGHHHHHHHHHHCCCC
T ss_pred --CCCEEEECCCccchhhHHHHHHHHHHhCCcc
Confidence 4899987765421 2235777888877 64
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=80.33 E-value=13 Score=41.95 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=91.7
Q ss_pred cchHHHHHHHHHhc--CCCEEEEeccCChHHHHHHHHHHHHHhcCC-CcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQA--GIDIFRVFDPLNSVPNLVKGMDAVQQVTGG-STIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~--Gid~~rif~~~nd~~~~~~~i~~a~~~G~~-~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
...+++.+++|.+. |+..+-|. .+++....+ ..+..|.. ...+... + +-|.. ..+.+--+.-++.
T Consensus 47 ~~dI~~lc~eA~~~~~~~aaVCV~--p~~V~~a~~---~L~~~gs~~~v~v~tV---i---gFP~G-~~~~~~Kv~E~~~ 114 (281)
T 2a4a_A 47 EDDIRELCNESVKTCPFAAAVCVY--PKFVKFINE---KIKQEINPFKPKIACV---I---NFPYG-TDSMEKVLNDTEK 114 (281)
T ss_dssp HHHHHHHHHHHHSSSSCCSEEEEC--GGGHHHHHH---HHHHHSSSCCSEEEEE---E---STTTC-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCccEEEEC--HHHHHHHHH---HhhccCCCCCceEEEE---e---CCCCC-CCCHHHHHHHHHH
Confidence 33467789999998 88877544 344444333 33321210 1133222 2 24432 4677777777888
Q ss_pred HHHCCCCEEEEccccCcCC---HH---HHHHHHHHHHHHcCCce----EEEeecCCcchHHHHHHHHHHhcCCEEEeccc
Q psy15244 829 LVESGAQVLCLKDMAGLLK---PT---AAKLLIGSFREKYPNIL----IHVHTHDMAGTGVATTLACVKAGADIVDVAAD 898 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l~---P~---~~~~lv~~lr~~~p~ip----i~~H~Hnd~GlA~An~laAi~AGad~VD~av~ 898 (1427)
+++.|||.|-+.=-.|.++ -. .+++-|.++++..++.+ |+.-.=+|.-.=...+..|+++|||+|-|+.
T Consensus 115 Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTST- 193 (281)
T 2a4a_A 115 ALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTST- 193 (281)
T ss_dssp HHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCC-
T ss_pred HHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCC-
Confidence 9999999887765666544 34 67778888888765544 2222223333223566788999999999885
Q ss_pred cCCCCCCCCcHHHHHHHHH
Q psy15244 899 SMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 899 GmG~~tgn~~lE~vv~~L~ 917 (1427)
|+ .+|++.+|++-.+.+
T Consensus 194 Gf--~~~gAT~edv~lm~~ 210 (281)
T 2a4a_A 194 GK--VQINATPSSVEYIIK 210 (281)
T ss_dssp SC--SSCCCCHHHHHHHHH
T ss_pred CC--CCCCCCHHHHHHHHH
Confidence 33 246777777665554
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=80.26 E-value=12 Score=42.56 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=51.0
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.+++|||.| .|.++..+++.+.+.|++++++..............+....+. .+..+.+.+.++.+..++|+|
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~------~Dl~d~~~~~~~~~~~~~D~v 93 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVE------GSIADHALVNQLIGDLQPDAV 93 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEE------CCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEE------EeCCCHHHHHHHHhccCCcEE
Confidence 367999998 7999999999999999999888654332111000001111111 134567777777776679998
Q ss_pred EeCCCc
Q psy15244 135 HPGYGF 140 (1427)
Q Consensus 135 ~pg~gf 140 (1427)
+-.-+.
T Consensus 94 ih~A~~ 99 (333)
T 2q1w_A 94 VHTAAS 99 (333)
T ss_dssp EECCCC
T ss_pred EECcee
Confidence 866543
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=80.15 E-value=29 Score=40.63 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
..+.++.+.++|+|.+.|-.+-.+-+.....++.+++. +. .+-+.-+ .+. +.++.+.++
T Consensus 109 ~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v---~Vi~G~v------------~t~----e~A~~a~~a 169 (366)
T 4fo4_A 109 NEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHL---EIIGGNV------------ATA----EGARALIEA 169 (366)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTC---EEEEEEE------------CSH----HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCC---ceEeeee------------CCH----HHHHHHHHc
Confidence 34568999999999988754433334555567777776 44 3322211 222 467888899
Q ss_pred CCCEEEEcccc----------CcCCHHHHHHHHHHHHH---HcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEe
Q psy15244 833 GAQVLCLKDMA----------GLLKPTAAKLLIGSFRE---KYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDV 895 (1427)
Q Consensus 833 Gad~i~i~Dt~----------G~l~P~~~~~lv~~lr~---~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~ 895 (1427)
|||.|.+.=.. |...|. ..++..+++ .. ++||-.=. |.. ..+..+|+.+||+.|-.
T Consensus 170 GAD~I~vG~gpGs~~~tr~~~g~g~p~--~~~l~~v~~~~~~~-~iPVIA~G----GI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 170 GVSAVKVGIGPGSICTTRIVTGVGVPQ--ITAIADAAGVANEY-GIPVIADG----GIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp TCSEEEECSSCSTTBCHHHHHCCCCCH--HHHHHHHHHHHGGG-TCCEEEES----CCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEecCCCCCCCcccccCcccch--HHHHHHHHHHHhhc-CCeEEEeC----CCCCHHHHHHHHHcCCCEEEE
Confidence 99999882001 122332 122333333 33 67765532 332 34667888899998743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1427 | ||||
| d1a9xa5 | 275 | d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta | 5e-64 | |
| d1ulza3 | 214 | d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom | 2e-59 | |
| d2j9ga3 | 216 | d.142.1.2 (A:115-330) Biotin carboxylase (BC), dom | 2e-55 | |
| d1rqba2 | 303 | c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N- | 9e-53 | |
| d2r7ka2 | 238 | d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo | 4e-43 | |
| d1a9xa6 | 259 | d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta | 3e-37 | |
| d1w96a3 | 267 | d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M | 7e-37 | |
| d1ulza2 | 114 | c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term | 2e-34 | |
| d2r85a2 | 235 | d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo | 9e-34 | |
| d2j9ga2 | 114 | c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term | 7e-32 | |
| d1w96a2 | 170 | c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N s | 8e-31 | |
| d1uc8a2 | 192 | d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly | 1e-28 | |
| d1ulza1 | 123 | b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-do | 2e-25 | |
| d1i7na2 | 206 | d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor | 7e-25 | |
| d2j9ga1 | 116 | b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-do | 3e-23 | |
| d1rqba1 | 168 | a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C | 1e-22 | |
| d1w96a1 | 116 | b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C | 4e-21 | |
| d1kjqa3 | 206 | d.142.1.2 (A:113-318) Glycinamide ribonucleotide t | 5e-20 | |
| d1nvma2 | 289 | c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolas | 1e-19 | |
| d1dcza_ | 77 | b.84.1.1 (A:) Biotin carboxyl carrier domain of tr | 2e-18 | |
| d3etja3 | 198 | d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo | 4e-18 | |
| d1iowa2 | 210 | d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain | 6e-17 | |
| d1ehia2 | 228 | d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V | 3e-15 | |
| d1sr9a2 | 310 | c.1.10.5 (A:61-370) 2-isopropylmalate synthase Leu | 5e-14 | |
| d1gsoa3 | 224 | d.142.1.2 (A:104-327) Glycinamide ribonucleotide s | 4e-13 | |
| d1laba_ | 80 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 1e-12 | |
| d1k8ma_ | 87 | b.84.1.1 (A:) Lipoyl domain of the mitochondrial b | 2e-12 | |
| d1bdoa_ | 80 | b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox | 4e-12 | |
| d1qjoa_ | 80 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 4e-12 | |
| d1vkza3 | 220 | d.142.1.2 (A:94-313) Glycinamide ribonucleotide sy | 9e-12 | |
| d1gjxa_ | 81 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 1e-11 | |
| d1iyua_ | 79 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 3e-11 | |
| d1pmra_ | 80 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 9e-11 | |
| d1ghja_ | 79 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 7e-10 | |
| d1e4ea2 | 211 | d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V | 1e-08 | |
| d1y8ob1 | 102 | b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa | 6e-07 |
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 216 bits (552), Expect = 5e-64
Identities = 56/301 (18%), Positives = 118/301 (39%), Gaps = 30/301 (9%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
D+ A K + +++ +V FP I++ +F GG G + N+
Sbjct: 1 DRRRFDVAMKKIGLETARSGI--AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 58
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGD--VVHLYERDCSMQ 288
E F+ + L ++L+++ + + E++++ DK + +V E +M
Sbjct: 59 ----EEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 114
Query: 289 RRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT-VEFLLD-KDDNFYFIEVN 346
I +APAQ ++ + S+ + + +G G+ V+F ++ K+ IE+N
Sbjct: 115 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN 174
Query: 347 PRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRN 406
PR+ L+ + TG + + K+A G +L E IT + +P +
Sbjct: 175 PRVSRSSALASKATGFPIAKVAAKLAVGYTLDE---LMNDITGGRTPA-----SFEPSID 226
Query: 407 FQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRA 466
+ + F +++ S + +++ T + S +K R
Sbjct: 227 YVVTKIPRFNFEKF-----------AGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRG 274
Query: 467 L 467
L
Sbjct: 275 L 275
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Score = 201 bits (511), Expect = 2e-59
Identities = 99/216 (45%), Positives = 154/216 (71%), Gaps = 3/216 (1%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKD 231
K +++ KA VP++PG+ + +++ K E+ +PV+LKA GGGGRG+R+ N++
Sbjct: 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60
Query: 232 AIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY 291
+ +N+++A EA +FG+ D+L+EK+I+ P+HIE Q+LGDK+G+V+HL ERDCS+QRR
Sbjct: 61 ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRN 120
Query: 292 QKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQV 351
QK+++IAP+ ++ R+ + AK +GY NAGT+EF+ D++ N YFIE+N R+QV
Sbjct: 121 QKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQV 180
Query: 352 EHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKI 387
EH +SE +TGID+V+ QIKIA G+ LT QE +
Sbjct: 181 EHPVSEMVTGIDIVKWQIKIAAGEPLTIK---QEDV 213
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Score = 190 bits (483), Expect = 2e-55
Identities = 95/218 (43%), Positives = 145/218 (66%), Gaps = 5/218 (2%)
Query: 171 DKVLARDAALKADVPIIPGTTEPV-TDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVAN 229
DKV A A KA VP +PG+ P+ D+DK + + +PVI+KA+ GGGGRGMR+V
Sbjct: 1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60
Query: 230 KDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQR 289
+ ++ ++EA A+F D + +EKY++ PRH+E+Q+L D G+ ++L ERDCSMQR
Sbjct: 61 DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR 120
Query: 290 RYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRL 349
R+QKV++ APA ++ +R I E + +GY AGT EFL + + FYFIE+N R+
Sbjct: 121 RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE-NGEFYFIEMNTRI 179
Query: 350 QVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKI 387
QVEH ++E ITG+D+++ Q++IA G+ L+ QE++
Sbjct: 180 QVEHPVTEMITGVDLIKEQLRIAAGQPLSIK---QEEV 214
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Score = 185 bits (470), Expect = 9e-53
Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 12/296 (4%)
Query: 652 SVRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTC 711
V + + + +T+ RDAHQSL+ATR+ D+ + +S+E WGGA +C
Sbjct: 4 EVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDA--AGYWSVECWGGATYDSC 61
Query: 712 LKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR 771
++FL E PWERL R+L+PN QM+LRG +L+GY +Y+ V F +++ G+D+FR
Sbjct: 62 IRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFR 121
Query: 772 VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831
VFD +N N+ M AV++ + TICY +++ Y LA QL++
Sbjct: 122 VFDAMNDPRNMAHAMAAVKKAGK---HAQGTICYTIS------PVHTVEGYVKLAGQLLD 172
Query: 832 SGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGA 890
GA + LKDMA LLKP A +I + ++ Y I++H H G + + ++AG
Sbjct: 173 MGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGV 232
Query: 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946
D+VD A SMS ++ LE T +D + +++ +R Y
Sbjct: 233 DVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKK 288
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Score = 155 bits (392), Expect = 4e-43
Identities = 24/231 (10%), Positives = 72/231 (31%), Gaps = 35/231 (15%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
++ L +A + + K E ++++ VI+K GGRG + ++
Sbjct: 1 ERSLEGKLLREAGLRVP-----------KKYESPEDIDGTVIVKFPGARGGRGYFIASST 49
Query: 231 DAIEENFKRAQSEALASFGKDD-MLVEKYIDRPR------------HIEVQILGDKYGDV 277
+ + + + + + +E+Y+ +E+ + +Y
Sbjct: 50 EEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN 109
Query: 278 VHLYERDCSMQRRYQKVI-----QIAPAQDMSVSVRDAITETSVRLAK------SLGYSN 326
+ R + + + + S+ + E +L G
Sbjct: 110 IDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIG 169
Query: 327 AGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSL 377
++ L +++ E++ R+ + + ++ G+ +
Sbjct: 170 PFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGEPLSMGQRI 220
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Score = 139 bits (351), Expect = 3e-37
Identities = 52/240 (21%), Positives = 108/240 (45%), Gaps = 13/240 (5%)
Query: 176 RDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
+ A + + T VT ++ E E+ +P++++A++ GGR M +V + E
Sbjct: 3 QHAVERLKLKQPANAT--VTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYD----EA 56
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV- 294
+ +R A++ +L++ ++D ++V + D G++V + +++
Sbjct: 57 DLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSG 114
Query: 295 --IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE 352
PA +S ++D + + +LA L V+F + K++ Y IEVNPR
Sbjct: 115 DSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAART 173
Query: 353 HTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPSTG 412
+ TG+ + + ++ GKSL E G+ +E I P +++ + + P G
Sbjct: 174 VPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVI-PPYYSVKEVVLPFNKFPGVDPLLG 232
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 138 bits (347), Expect = 7e-37
Identities = 86/270 (31%), Positives = 133/270 (49%), Gaps = 33/270 (12%)
Query: 170 GDKVLARDAALKADVPIIPGTTEP------------------------VTDVDKVKEFCD 205
GDK+ + A A VP IP + T + +
Sbjct: 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60
Query: 206 EVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHI 265
+ FPV++KA+ GGGG+G+R V EE+F +A + + K R RH+
Sbjct: 61 RIGFPVMIKASEGGGGKGIRQVER----EEDFIALYHQAANEIPGSPIFIMKLAGRARHL 116
Query: 266 EVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS 325
EVQ+L D+YG + L+ RDCS+QRR+QK+I+ AP + + +VRL K +GY
Sbjct: 117 EVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYV 176
Query: 326 NAGTVEFLLDKDDN-FYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL---G 381
+AGTVE+L DD FYF+E+NPRLQVEH +E ++G+++ +Q++IA G + +
Sbjct: 177 SAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIR 236
Query: 382 LCQEKITPQGCAIQCHLRTEDPKRN-FQPS 410
I +T+D + +P
Sbjct: 237 TLYGMNPHSASEIDFEFKTQDATKKQRRPI 266
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 125 bits (316), Expect = 2e-34
Identities = 52/115 (45%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
+ K+L+ANR E+A+R+ RAC E+GI +V IY+E + + H D+A+++G P+ Y
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGT--DPLDTY 59
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGD 171
LN II +A DAIHPGYGFL+E +FAK AG+ FIGP V++ +GD
Sbjct: 60 LNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGD 114
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Score = 128 bits (322), Expect = 9e-34
Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 32/231 (13%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
D+ L R KA + + +V E D++E PVI+K GG+G + +
Sbjct: 1 DRNLERKWLKKAGIRVP-----------EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDP 49
Query: 231 DAIEENFKRAQSEALASFGKD---------DMLVEKYIDRPRHIEVQILGDKYG---DVV 278
+ ++ K+ + Y E++++ +V
Sbjct: 50 EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVD 109
Query: 279 HLYERDCSMQRRYQKVIQ----IAPAQDMSVSVRDAITETSVRLAKSL-----GYSNAGT 329
+ Q + I + S+ + E R+ K+ G
Sbjct: 110 AIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFC 169
Query: 330 VEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
+E + D F E++ R+ + + ++ ++ G+ +
Sbjct: 170 LEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAME 220
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 118 bits (297), Expect = 7e-32
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAY 116
++KI+IANR E+A+R+ RAC E+GIK+V ++S D+ H D+ +G P V +Y
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPA-PSVKSY 60
Query: 117 LNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLG 170
LNIP II A+ AIHPGYGFLSE +FA+ V +G FIGP ++ +G
Sbjct: 61 LNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114
|
| >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Acetyl-CoA carboxylase, BC-N subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 117 bits (295), Expect = 8e-31
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 43 VRRCGCKPPPPPKTMEKILIANRSEVAIRVARACNEMGIK-----------SVGIYSEQD 91
V+ G + KILIAN A++ R+ + + ++ + +
Sbjct: 37 VKSHGGHTV-----ISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLE 91
Query: 92 KFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFAKAV 151
+ + DQ V G Y N+ I+ IA+ +VDA+ G+G SE + +
Sbjct: 92 ANAEYIRMADQYIEVPGG-TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKL 150
Query: 152 IGA--GLEFIGPAPNVLKTL 169
+ + FIGP N +++L
Sbjct: 151 SQSKRKVIFIGPPGNAMRSL 170
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Score = 111 bits (279), Expect = 1e-28
Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 16/202 (7%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKD 231
K A KA +P T TD ++ + +PV+LK G GR +
Sbjct: 1 KWATSVALAKAGLPQPK--TALATDREEALRLMEAFGYPVVLKPVIGSWGRLL--AXXXX 56
Query: 232 AIEENFKRAQSEALASFGKDDMLVEKYIDRPR-HIEVQILGDKYGDVVHLYERDCSMQRR 290
E L F +++Y+++P I V ++G++ ++
Sbjct: 57 XXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTA 116
Query: 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQ 350
+ P + A V+ + EVN ++
Sbjct: 117 RGGQAENCPLTEE--------VARLSVKAAEAVGGGVVAVDLFES-ERGLLVNEVNHTME 167
Query: 351 VEHTLSEEITGIDVVQSQIKIA 372
+++ TG+D+ +K A
Sbjct: 168 FKNS--VHTTGVDIPGEILKYA 187
|
| >d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Aquifex aeolicus [TaxId: 63363]
Score = 100 bits (249), Expect = 2e-25
Identities = 45/120 (37%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 391 GCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKII 450
G AI+C + EDPK+NF PST ++ + P GIRV+ G +++P YDS++AK+I
Sbjct: 3 GYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEH-AAARGFEVTPYYDSMIAKLI 61
Query: 451 VHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLE 510
T+ + E+MR ALE +++GV T +P L+N+ +K F +G+ T +++++P++ E
Sbjct: 62 TWAPTWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGK-FTTKYLEEHPEVFE 120
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 101 bits (252), Expect = 7e-25
Identities = 36/212 (16%), Positives = 58/212 (27%), Gaps = 22/212 (10%)
Query: 168 TLGDKVLARDAALKA----DVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRG 223
DK + P T +E FPV++K G G
Sbjct: 8 NFCDKPWVFAQMVAIFKTLGGEKFPLI--EQTYYPNHREMLTLPTFPVVVKIGHAHSGMG 65
Query: 224 MRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER 283
V N ++ + E +ID I VQ + +
Sbjct: 66 KVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKI---GNNYKAYMRT 116
Query: 284 DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343
S + + MS D ++ G + V+ + KD Y
Sbjct: 117 SISGNWKTNTGSAMLEQIAMS----DRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIF 172
Query: 344 EVN---PRLQVEHTLSEEITGIDVVQSQIKIA 372
EV L EH + + D+V S++
Sbjct: 173 EVMDCSMPLIGEHQVEDRQLITDLVISKMNQL 204
|
| >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Escherichia coli [TaxId: 562]
Score = 93.9 bits (233), Expect = 3e-23
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 391 GCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKII 450
G A++C + EDP F PS G++ F P G+R +S Y G + P YDS++ K+I
Sbjct: 2 GHAVECRINAEDPN-TFLPSPGKITRFHAPGGFGVRWES-HIYAGYTVPPYYDSMIGKLI 59
Query: 451 VHTATYKSSCEKMRRALEETQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQL 508
+ + +M+ AL+E + G+ TN+ + + +D+ F G ++++ L
Sbjct: 60 CYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGG-TNIHYLEKKLGL 116
|
| >d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: post-HMGL domain-like family: Conserved carboxylase domain domain: Transcarboxylase 5S subunit, C-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Score = 93.8 bits (233), Expect = 1e-22
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 29/183 (15%)
Query: 995 IPGGQYTNLKFRTMSFGLD--FEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEK 1052
IPGG +N++ + + G + ++V G TPSS++V A+F
Sbjct: 1 IPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVM-- 58
Query: 1053 LSYRDVMENADKIIFPKSVTEFFQGSIGEPYQGFPKKLQEKVLDSLKDHAL-ERKAEFDP 1111
+ + G G K+ + + + +R A+ P
Sbjct: 59 --------MGEYKRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLP 110
Query: 1112 IMACDYREDEPFK----------MNKLIFPKATKKFMKFRDEFGPVDKLPTRIFFHALER 1161
++ + +FP+ F + R E GP T +
Sbjct: 111 PEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHRAE-GPHSVALT-----DAQL 164
Query: 1162 KAE 1164
KAE
Sbjct: 165 KAE 167
|
| >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 116 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Acetyl-CoA carboxylase, BC-C subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.2 bits (218), Expect = 4e-21
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 391 GCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKII 450
G C + +EDP F+PS G L +S + I DS I
Sbjct: 2 GHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGY-FSVGNNGNIHSFSDSQFGHIF 60
Query: 451 VHTATYKSSCEKMRRALEETQVSG-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504
++S + M AL+E + G T + +L+ + + + F + T ++DD
Sbjct: 61 AFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNT-ITTGWLDD 114
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Score = 87.8 bits (216), Expect = 5e-20
Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)
Query: 176 RDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEE 235
R AA + +P +E ++ +P I+K G+G + + + + +
Sbjct: 7 RLAAEELQLPTSTY--RFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQ 64
Query: 236 NFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVI 295
+K ++ G ++VE + I + + G Y++
Sbjct: 65 AWKY--AQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESW 122
Query: 296 QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTL 355
Q +++ I V G L D F EV+PR +
Sbjct: 123 QPQQMSPLALERAQEIARKVVLALGGYGLFG----VELFVCGDEVIFSEVSPRPHDTGMV 178
Query: 356 SEEITGIDVVQSQIKIAQGKSLTEL 380
+ + ++ G + +
Sbjct: 179 TLISQDLSEFALHVRAFLGLPVGGI 203
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Length = 289 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Score = 88.9 bits (219), Expect = 1e-19
Identities = 45/291 (15%), Positives = 94/291 (32%), Gaps = 30/291 (10%)
Query: 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGA---VSHTCLK 713
K + ++D T RD ++ + D++ ++ + + S+E+ G S
Sbjct: 6 KKLYISDVTLRDGSHAI-RHQYTLDDVRAIARALDK--AKVDSIEVAHGDGLQGSSFNYG 62
Query: 714 FLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVF 773
F + E + + I + +L + A QAG + RV
Sbjct: 63 FGRHTDLEYIEAVAGEISHAQIATLL----------LPGIGSVHDLKNAYQAGARVVRVA 112
Query: 774 DPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESG 833
+ ++ + + + + + K + G
Sbjct: 113 THCTEADVSKQHIEYARNLG---MDTVGFLMMSHM--------IPAEKLAEQGKLMESYG 161
Query: 834 AQVLCLKDMAGLLKPTAAKLLIGSFREKYPN-ILIHVHTHDMAGTGVATTLACVKAGADI 892
A + + D G + + + +F+ + +H H GVA ++ V+ G D
Sbjct: 162 ATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDR 221
Query: 893 VDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVREL 943
VD + M + ++ E G DL+ + D + VR L
Sbjct: 222 VDASLAGMGAGAGNAPLEVFIAVAERLGWNHGTDLYTLMDAAD--DIVRPL 270
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Score = 78.8 bits (194), Expect = 2e-18
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 1350 SKADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIF 1409
+ A GEI AP+ G + ++ VK G VK ++V+ MK ET I+A DG V+++
Sbjct: 1 AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Query: 1410 VEVGGQVAQNDLVVVL 1425
V+ V ++ +
Sbjct: 61 VKERDAVQGGQGLIKI 76
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Score = 82.1 bits (201), Expect = 4e-18
Identities = 24/209 (11%), Positives = 57/209 (27%), Gaps = 14/209 (6%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
D++ + K +P P + + + D + I+K GG +
Sbjct: 1 DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRA 58
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290
+ ++E L + + +VE+ I+ + + G V Q
Sbjct: 59 N---------ETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDG 109
Query: 291 YQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQ 350
+ P + R +++ E+ PR+
Sbjct: 110 ILRTSVAFPQANAQQQARAEEMLSAIMQE---LGYVGVMAMECFVTPQGLLINELAPRVH 166
Query: 351 VEHTLSEEITGIDVVQSQIKIAQGKSLTE 379
++ I + ++ L +
Sbjct: 167 NSGHWTQNGASISQFELHLRAITDLPLPQ 195
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 79.0 bits (193), Expect = 6e-17
Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 22/216 (10%)
Query: 172 KVLARDAALKADVPIIPGTT-----EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRM 226
K+ ++ A +P+ P DK + PVI+K + G GM
Sbjct: 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 60
Query: 227 VANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCS 286
V ++A+++ + A D+ ++ + V ILG++ + +
Sbjct: 61 VVAENALQDALRLAFQ-------HDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTF 113
Query: 287 MQRRYQKVIQIAPAQDMSVSVRDAITET---SVRLAKSLGYSNAGTVEFLLDKDDNFYFI 343
+ + + ++ +LG G ++ +LD D FY +
Sbjct: 114 YDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLL 173
Query: 344 EVNPRLQVEHT----LSEEITGI---DVVQSQIKIA 372
E N + ++ G+ +V +++A
Sbjct: 174 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 209
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 74.3 bits (181), Expect = 3e-15
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 20/192 (10%)
Query: 171 DKVLARDAALKADVPIIPGT--TEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVA 228
DK L ++ + + + E+ V +KAA G G+ V
Sbjct: 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVT 60
Query: 229 NKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQ 288
N + E + +L+E+ ++ R +EV ++G+ V + Q
Sbjct: 61 NAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQ 114
Query: 289 RRYQKV------------IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDK 336
+ +S V + + ++ K L ++FLLD+
Sbjct: 115 GSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE 174
Query: 337 DDNFYFIEVNPR 348
++ Y E N
Sbjct: 175 NNVPYLGEPNTL 186
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.3 bits (176), Expect = 5e-14
Identities = 34/295 (11%), Positives = 78/295 (26%), Gaps = 16/295 (5%)
Query: 663 DTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNL--YSLEMWGGAVSHT----CLKFLK 716
RD +Q+L+ + ++ + + + +E+ + S T + ++
Sbjct: 16 AVDLRDGNQALIDP-MSPARKRR----MFDLLVRMGYKEIEVGFPSASQTDFDFVREIIE 70
Query: 717 ECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPL 776
+ ++ L P + + G + L + R
Sbjct: 71 QGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQA 130
Query: 777 NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836
+ K ++ + G E + + + +
Sbjct: 131 IATDGARKCVEQAAKYPGTQWRFEYSPESYTG--TELEYAKQVCDAVGEVIAPTPERPII 188
Query: 837 LCLKDMAGLLKPTAAKLLIGSFREKYPNI---LIHVHTHDMAGTGVATTLACVKAGADIV 893
L + P I N ++ +H H+ GT VA AGAD +
Sbjct: 189 FNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRI 248
Query: 894 DVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPAH 948
+ + T+ L + ID ++ + +L
Sbjct: 249 EGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHER 303
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Score = 68.0 bits (165), Expect = 4e-13
Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKD 231
K +D + +P + T+V+ + E P+++KA G+G+ + +
Sbjct: 2 KAFTKDFLARHKIPTAEY--QNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 59
Query: 232 AIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDK-------YGDVVHLYERD 284
E + +++E+++D + ++ + D + ++D
Sbjct: 60 EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKD 119
Query: 285 CSMQRRYQKVIQIAPAQDMSVSVR--DAITETSVRLAKSLGYSNAGTV--EFLLDKDDNF 340
AP V R + I +V+ + G + G + ++DK N
Sbjct: 120 TGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNP 179
Query: 341 YFIEVNPRL-QVEHTLSEEITGIDVVQSQIKIAQGK 375
IE N R +E D+V+ + + K
Sbjct: 180 KVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESK 215
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 62.5 bits (152), Expect = 1e-12
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G I++ VK G +V ++DVL + K I + G V EI V G ++ L
Sbjct: 16 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 75
Query: 1426 DV 1427
D
Sbjct: 76 DA 77
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (151), Expect = 2e-12
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
+ E VK G V + D + + K I + DGV+K+++ + +V +
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
Query: 1426 DV 1427
+
Sbjct: 79 ET 80
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Score = 61.1 bits (148), Expect = 4e-12
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 1359 EIGAPMPGNI-------IEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVE 1411
+ +PM G + ++VGQ+V D L ++ MK I A G VK I VE
Sbjct: 6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE 65
Query: 1412 VGGQVAQNDLVVVLD 1426
G V ++ +VV++
Sbjct: 66 SGQPVEFDEPLVVIE 80
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Score = 61.0 bits (148), Expect = 4e-12
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 1359 EIGAPMPGN----IIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG 1414
E+ P G + EV VKVG +V LI + K + A GVVKE+ V VG
Sbjct: 4 EVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD 63
Query: 1415 QVAQNDLVVVLDV 1427
+V L+++ +V
Sbjct: 64 KVKTGSLIMIFEV 76
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Score = 63.9 bits (154), Expect = 9e-12
Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 19/222 (8%)
Query: 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVAN-K 230
KV A+ K + ++++E + P ++KA G+G+ ++ + +
Sbjct: 2 KVYAKRFMKKYGIRTARFEV--AETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKE 59
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKY------GDVVHLYERD 284
+ IE+ K E + ++ E + G + D L + D
Sbjct: 60 ETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGD 119
Query: 285 CSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLD-KDDNFYFI 343
++ + + + ++ + GY+ G + L D + Y +
Sbjct: 120 RGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYIL 179
Query: 344 EVNPRL-----QVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380
E N RL +V TL+ E V + ++ +G + +
Sbjct: 180 EYNVRLGDPETEVIVTLNPE----GFVNAVLEGYRGGKMEPV 217
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Score = 59.8 bits (145), Expect = 1e-11
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 1360 IGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQN 1419
IG +II V+V VG + +D LI + K + A GVVKE+ V+VG ++++
Sbjct: 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEG 69
Query: 1420 DLVVVLDV 1427
L+VV++
Sbjct: 70 GLIVVVEA 77
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Score = 58.7 bits (142), Expect = 3e-11
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVV 1423
G +IE+ VK G ++ L+V+ K + + GVVK + V++G ++ + D ++
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAII 70
Query: 1424 VLDV 1427
L+
Sbjct: 71 ELEP 74
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Score = 57.1 bits (138), Expect = 9e-11
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
+ K G V +++VL+ + K + ASADG++ + + G V ++ L
Sbjct: 17 ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRL 76
Query: 1426 D 1426
Sbjct: 77 R 77
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Score = 54.4 bits (131), Expect = 7e-10
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425
G + K G+ VK++++++ + K + A ADGV+ EI G V +L+ L
Sbjct: 16 GTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75
Query: 1426 D 1426
Sbjct: 76 T 76
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 8/182 (4%)
Query: 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANK 230
DK L A A + + D+ +PV +K A G G++ V +
Sbjct: 1 DKSLTYIVAKNAGIATPAFWV--INKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNSA 56
Query: 231 DAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRR 290
D ++ + A+ + + + ++ + + Y Q
Sbjct: 57 DELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEV 116
Query: 291 YQKVI----QIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVN 346
+ I D+S R I ET ++ K+LG V+ L + EVN
Sbjct: 117 EPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVN 176
Query: 347 PR 348
Sbjct: 177 TL 178
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (111), Expect = 6e-07
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQ-VAQNDLVVV 1424
G + + KVG+++ + D+L + K +G + +I V G + V + +
Sbjct: 20 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 79
Query: 1425 LD 1426
+
Sbjct: 80 IV 81
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1427 | |||
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 100.0 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 100.0 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 100.0 | |
| d1rqba1 | 168 | Transcarboxylase 5S subunit, C-terminal domain {Pr | 100.0 | |
| d1sr9a2 | 310 | 2-isopropylmalate synthase LeuA, catalytic domain | 100.0 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 100.0 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 100.0 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 100.0 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 100.0 | |
| d1ulza1 | 123 | Biotin carboxylase (BC), C-domain {Aquifex aeolicu | 99.97 | |
| d2j9ga1 | 116 | Biotin carboxylase (BC), C-domain {Escherichia col | 99.96 | |
| d1w96a1 | 116 | Acetyl-CoA carboxylase, BC-C subdomain {Baker's ye | 99.96 | |
| d2j9ga2 | 114 | Biotin carboxylase (BC), N-terminal domain {Escher | 99.95 | |
| d1ulza2 | 114 | Biotin carboxylase (BC), N-terminal domain {Aquife | 99.95 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 99.94 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.92 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.92 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 99.92 | |
| d1w96a2 | 170 | Acetyl-CoA carboxylase, BC-N subdomain {Baker's ye | 99.92 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.9 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.89 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 99.88 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.87 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.85 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.85 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 99.71 | |
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.71 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 99.66 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.49 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.4 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.38 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.36 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 99.32 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.27 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.17 | |
| d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.16 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 98.75 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.74 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.67 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 98.66 | |
| d2nu7b2 | 238 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 98.14 | |
| d2pbza2 | 213 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 97.91 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 97.74 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 97.55 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 97.44 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 96.82 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 96.74 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 96.29 | |
| d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomo | 96.12 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 96.09 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 96.03 | |
| d1onla_ | 127 | Protein H of glycine cleavage system {Thermus ther | 95.65 | |
| d1hpca_ | 131 | Protein H of glycine cleavage system {Pea (Pisum s | 95.57 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 95.55 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.48 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 95.33 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 95.16 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 95.06 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 94.91 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 94.83 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 94.68 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 94.48 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 94.03 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 93.93 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 93.79 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.41 | |
| d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferas | 92.78 | |
| d1gpra_ | 158 | Glucose permease IIa domain, IIa-glc {Bacillus sub | 92.6 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 92.51 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 92.25 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 91.99 | |
| d1sfla_ | 236 | Type I 3-dehydroquinate dehydratase {Staphylococcu | 91.85 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 91.67 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 91.56 | |
| d1gpra_ | 158 | Glucose permease IIa domain, IIa-glc {Bacillus sub | 91.26 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 90.97 | |
| d2gpra_ | 154 | Glucose permease IIa domain, IIa-glc {Mycoplasma c | 90.91 | |
| d2f3ga_ | 150 | Glucose-specific factor III (glsIII) {Escherichia | 90.49 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 90.18 | |
| d2f3ga_ | 150 | Glucose-specific factor III (glsIII) {Escherichia | 90.08 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 89.99 | |
| d1uc8a1 | 88 | Lysine biosynthesis enzyme LysX, N-terminal domain | 89.86 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.85 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 89.77 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 89.41 | |
| d2gpra_ | 154 | Glucose permease IIa domain, IIa-glc {Mycoplasma c | 89.17 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 88.91 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 88.42 | |
| d1ehia1 | 132 | D-alanine:D-lactate ligase VanA, N-domain {Leucono | 87.45 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 85.5 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 84.91 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 84.59 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 84.15 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 83.73 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 83.56 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 83.38 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 83.05 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 82.84 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 82.73 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 82.65 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 82.43 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 81.58 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 81.25 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 80.82 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 80.79 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 80.13 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 80.03 |
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=100.00 E-value=1.7e-51 Score=475.35 Aligned_cols=297 Identities=33% Similarity=0.568 Sum_probs=281.8
Q ss_pred cccCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC
Q psy15244 653 VRKLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN 732 (1427)
Q Consensus 653 ~~~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~ 732 (1427)
|...++|+|+|||||||+||+++++|+++||++|++.|++ +|+++||+|+++.+++..+|.++++|+.+..+++.+++
T Consensus 5 ~~~p~~i~I~D~tlRDG~Qs~~~~~~~~~~ki~i~~~L~~--~Gv~~IEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T d1rqba2 5 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDA--AGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPN 82 (303)
T ss_dssp CCCSEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHH--TTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTT
T ss_pred CCCCCeeEEEECCCcccccCCCCcCCCHHHHHHHHHHHHH--cCCCEEEeCCCcChHHHHHHhcCchHHHHHHHHhhhhh
Confidence 5567889999999999999988899999999999999999 89999999999999999999999999999999999999
Q ss_pred CceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCC
Q psy15244 733 IPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNP 812 (1427)
Q Consensus 733 ~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p 812 (1427)
..++.+.|+.+..++..++.+.+...+......+++.+|+++..++++.+..+++.+++.|. .+.+.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~------ 153 (303)
T d1rqba2 83 SRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGK---HAQGTICYT------ 153 (303)
T ss_dssp SCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTC---EEEEEEECC------
T ss_pred HHHHHHhcccccccccccchhhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHcCC---eEEEEEEec------
Confidence 99999999999999999999999999999999999999999999999999999999999999 777776654
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHc-CCceEEEeecCCcchHHHHHHHHHHhcCC
Q psy15244 813 NKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGAD 891 (1427)
Q Consensus 813 ~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An~laAi~AGad 891 (1427)
+...+++++++++++++.++|+++|+|+||+|.++|.+++++|+.+++++ |+++|++|+|||+|||+||+++|+++||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~i~i~~H~Hnd~Gla~AN~laA~~aG~~ 233 (303)
T d1rqba2 154 ISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVD 233 (303)
T ss_dssp CSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEeecCccchhhhHHHHHHHHHHHhhcCCcccceeccCchHHHHHHHHHHHHHcCCC
Confidence 23368999999999999999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred EEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCCC-CCcccccchhhhh
Q psy15244 892 IVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAPA-HNLLWRCGIDLHD 960 (1427)
Q Consensus 892 ~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~~-~kpivG~~~f~~~ 960 (1427)
+||+|++||||||||++||+|+++|+.+|++|++|+++|.+++++++++.....+. ++|+||+++|.|+
T Consensus 234 ~id~ti~GlG~~~GN~~te~lv~~L~~~g~~t~idl~~L~~i~~~~~~ir~~y~~~~~~~~v~~~~~~h~ 303 (303)
T d1rqba2 234 VVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLVDTSIFKSQ 303 (303)
T ss_dssp EEEEBCGGGCSTTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCCCTHHHHC
T ss_pred EEEECCccCCCCCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCChHHhccC
Confidence 99999999999999999999999999999999999999999999999997777664 7899999999985
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=100.00 E-value=2.1e-44 Score=413.03 Aligned_cols=278 Identities=16% Similarity=0.193 Sum_probs=249.2
Q ss_pred cCCCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchh---hhhhccccChHHHHHHHHHhCC
Q psy15244 655 KLKHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSH---TCLKFLKECPWERLAELRELIP 731 (1427)
Q Consensus 655 ~~~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd---~~~rfl~e~p~erl~~lr~~~p 731 (1427)
..|+|+|+|||||||.|++ +.+|++++|+++++.|++ +|++.||+|+++.+. ...++....+++.++.+....+
T Consensus 4 ~~kkI~I~D~TlRDG~Q~~-~~~~s~e~k~~i~~~L~~--~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 80 (289)
T d1nvma2 4 PSKKLYISDVTLRDGSHAI-RHQYTLDDVRAIARALDK--AKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEIS 80 (289)
T ss_dssp CCCBCEEEECTTTHHHHHT-TTCCCHHHHHHHHHHHHH--HTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCS
T ss_pred CCCCeEEEECCcccccCCC-CCCCCHHHHHHHHHHHHH--cCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcc
Confidence 4578999999999999997 589999999999999999 799999999877654 3456677789999999999888
Q ss_pred CCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC
Q psy15244 732 NIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN 811 (1427)
Q Consensus 732 ~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~ 811 (1427)
+..+.++++... . ...++..+.++|++.+|+++..++++++...++.+++.|. .+...+.
T Consensus 81 ~~~i~~~~~~~~--------~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~a~~~g~---~~~~~~~------- 140 (289)
T d1nvma2 81 HAQIATLLLPGI--------G--SVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGM---DTVGFLM------- 140 (289)
T ss_dssp SSEEEEEECBTT--------B--CHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTC---EEEEEEE-------
T ss_pred hhHHHHHHhhhh--------h--hHHHHHHHHHhcccceEEEeehhhhhhHhHHHHHHHHhCC---ceeeEee-------
Confidence 888888876431 1 2235778889999999999999999999999999999999 6655433
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHHc-CCceEEEeecCCcchHHHHHHHHHHhcC
Q psy15244 812 PNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREKY-PNILIHVHTHDMAGTGVATTLACVKAGA 890 (1427)
Q Consensus 812 p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~-p~ipi~~H~Hnd~GlA~An~laAi~AGa 890 (1427)
+.++++.+++.++++.+.++|+++|+|+||.|.++|.+++++++.+++.+ |+++|++|+|||.|+|+||+++|+++||
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~ 219 (289)
T d1nvma2 141 -MSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGC 219 (289)
T ss_dssp -STTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTC
T ss_pred -eccccCchhhhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCC
Confidence 34479999999999999999999999999999999999999999999998 6899999999999999999999999999
Q ss_pred CEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHH-HHHHHhCCCCCCCCcccccch
Q psy15244 891 DIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSS-YWRKVRELYAPAHNLLWRCGI 956 (1427)
Q Consensus 891 d~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~-~v~~~~g~~~~~~kpivG~~~ 956 (1427)
++||+|++|||||+||++||+++.+|+.+|+++++|+++|.++++ +++++.++|+|+|||+||.+.
T Consensus 220 ~~id~si~GlG~~~GN~~tE~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~p~~~~~~~vg~~~ 286 (289)
T d1nvma2 220 DRVDASLAGMGAGAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRPVRVDRETLGLGY 286 (289)
T ss_dssp CEEEEBGGGCSSTTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSCCSCCHHHHHHHH
T ss_pred cEeeccccccCCCCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCeecCCC
Confidence 999999999999999999999999999999999999999999875 567888999999999999764
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-41 Score=382.30 Aligned_cols=271 Identities=20% Similarity=0.298 Sum_probs=233.6
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
||.++|++|+++|||+|++. .++|.+++.++++++||||||||++|+||+||++|++.+||.++++++.. .+++
T Consensus 1 Dr~~~r~~~~~~gip~~~~~--~~~~~~ea~~~~~~ig~PvviKp~~~~gg~G~~~v~~~~el~~~~~~a~~----~~~~ 74 (275)
T d1a9xa5 1 DRRRFDVAMKKIGLETARSG--IAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLD----LSPT 74 (275)
T ss_dssp SHHHHHHHHHHTTCCCCSEE--EESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHH----HCTT
T ss_pred CHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeeCHHHHHHHHHHHHh----hCCC
Confidence 79999999999999999986 78999999999999999999999999999999999999999998876544 5678
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEE--EeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCC-Ce
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVV--HLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYS-NA 327 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv--~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~-G~ 327 (1427)
++++|||||++++|+++++++|++|+.+ ++.+++|+.+++++++++.+|++.|+++.+++|.+.+.++++++||. |.
T Consensus 75 ~~v~iEe~l~g~~e~~v~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~aP~~~L~~~~~~~i~~~a~~i~~~lg~~~G~ 154 (275)
T d1a9xa5 75 KELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGG 154 (275)
T ss_dssp SCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred CcEEEeeecCCchhheeeeEEecCCCEEEEEeeccccccCcccCceeEEcCCCcCCHHHHHHHHHHHHHHHHHcCceECc
Confidence 9999999999889999999999988854 67899999999999999999999999999999999999999999996 99
Q ss_pred EEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCc
Q psy15244 328 GTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRN 406 (1427)
Q Consensus 328 ~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~ 406 (1427)
+|+||+++. +|++||||+|||+|++|++++.+||+||+++++++++|.+|+.+.. ... .......
T Consensus 155 ~~~ef~~~~~~~~~~~iE~npR~~~~~~~~~~~tgidlv~~~~~~a~G~~l~~~~~---~~~-----------~~~~~~~ 220 (275)
T d1a9xa5 155 SNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMN---DIT-----------GGRTPAS 220 (275)
T ss_dssp EEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBC---TTT-----------TTCSBSC
T ss_pred eEEEEEEeCCCCEEEEEEecCCCCceehhhhHhhCCCHHHHHHHHHcCCCCccccc---ccc-----------cccCccc
Confidence 999999985 7899999999999999999999999999999999999999875422 111 1112234
Q ss_pred cCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHh
Q psy15244 407 FQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRAL 467 (1427)
Q Consensus 407 f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL 467 (1427)
+.|..+.+... .+.++++ .....|..+++.|+| +|+||++|+|++||++|+.|||
T Consensus 221 ~~~~~~~~~~k----~~~~~~~-~~~~~~~~l~~~~~s-~g~vi~~G~t~~eA~~ka~raL 275 (275)
T d1a9xa5 221 FEPSIDYVVTK----IPRFNFE-KFAGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGL 275 (275)
T ss_dssp SCCBCSSEEEE----EEECCGG-GCTTSCCBCCSSCCC-CEEEEEEESSHHHHHHHHHHHS
T ss_pred cCCCCCcEecC----ccceecC-CCCCCCCEeCCCccc-CEEEEEEECCHHHHHHHHHHhC
Confidence 55555554322 1223333 223467788899999 9999999999999999999987
|
| >d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: post-HMGL domain-like family: Conserved carboxylase domain domain: Transcarboxylase 5S subunit, C-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=100.00 E-value=6.4e-40 Score=342.02 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=144.9
Q ss_pred CCCccHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCCCccccchhhHHHHHHHHHHcCCChhhhhhccccccccHhHH
Q psy15244 995 IPGGQYTNLKFRTMSFGL--DFEDVKRAYRTANFLLGDIIKCTPSSKVVADLAIFMTQEKLSYRDVMENADKIIFPKSVT 1072 (1427)
Q Consensus 995 ~pGg~~snl~~ql~~~gl--~~~ev~~~~~~v~~~lG~~~~vTP~sq~vg~~a~~~v~~~~~~~~~~~~~~~~~~~~~v~ 1072 (1427)
|||||||||++||+++|+ +|+||+++|++||++||||||||||||||||||+|||+||. |+ .+|+|++
T Consensus 1 ~PGG~~sNl~~Q~~~~g~~dr~~ev~~~~~~V~~~lG~~~~VTPsSqvVG~~A~~nV~~g~-~~---------~~~~e~~ 70 (168)
T d1rqba1 1 IPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVMMGE-YK---------RMTGEFA 70 (168)
T ss_dssp CCHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHTTCCCCCTTHHHHHHHHHHHHHHHCT-TS---------SCCHHHH
T ss_pred CCCchHHHHHHHHHHcCcHhHHHHHHHHHHHHHHhcCCCceeCcHHHHHHHHHHHHHHhhh-cc---------cccHHHH
Confidence 799999999999999999 99999999999999999999999999999999999999984 32 6899999
Q ss_pred HHhccccCCCCCCCCHhHHHHH--hCCCCCcccCCCCCCCccccccccCCCccccccccChhhHHHHHhHhhhcCCCCCC
Q psy15244 1073 EFFQGSIGEPYQGFPKKLQEKV--LDSLKDHALERKAEFDPIMACDYREDEPFKMNKLIFPKATKKFMKFRDEFGPVDKL 1150 (1427)
Q Consensus 1073 ~~~~g~~g~~~~~~~~~~~~~~--l~~~~~~~~rp~~~~~~~~~~~~~e~~~~d~~~~~~p~~~~~~~~~~~~~g~~~~l 1150 (1427)
+|++|+||+||++|++++++++ ++|+++|++||+++ ++| ||++. ++ ++.+++|
T Consensus 71 ~~~~G~~G~~P~~~~~~~~k~~~~~~g~~pit~RPgd~-----------l~p-d~~~~-----~~---el~~~~g----- 125 (168)
T d1rqba1 71 DIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADL-----------LPP-EWEKQ-----SK---EAATLKG----- 125 (168)
T ss_dssp HHHTTTTCCCSSCCCHHHHHHHHHHHCCCCCCSCGGGG-----------CCC-CHHHH-----HH---HHTTSTT-----
T ss_pred HHhcccccCCCCCCCHHHHHHHHhccCCCCCCCCchhh-----------ccc-cHHHH-----HH---HHHHHhC-----
Confidence 9999999999999999999866 67999999999999 888 88877 77 6666666
Q ss_pred CchhcccccccccccCCccccccccCccchhhhhcCchhHHHHHHHhhccCCCCCCCcccc
Q psy15244 1151 PTRIFFHALERKAEFDPIMACDCRENEPVKMNELIFPKATKKFMKFRDEFGPVDKLPTRIF 1211 (1427)
Q Consensus 1151 ~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~f 1211 (1427)
...++|| +|||+|||+||.+|+++|+ ||++++++|...
T Consensus 126 ---------------~~~sded-------lLsyaLyP~V~~~f~~~r~-~g~~~v~~t~~~ 163 (168)
T d1rqba1 126 ---------------FNGTDED-------VLTYALFPQVAPVFFEHRA-EGPHSVALTDAQ 163 (168)
T ss_dssp ---------------CCSSHHH-------HHHHHHCTTTHHHHHHHGG-GCCCCCSCCHHH
T ss_pred ---------------CCCCHHH-------HHHHHcCChhHHHHHHHHH-hCCCCCCcchhh
Confidence 3578899 9999999999999999976 799999998753
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.3e-37 Score=355.58 Aligned_cols=270 Identities=14% Similarity=0.136 Sum_probs=202.6
Q ss_pred CCeEEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCC---C
Q psy15244 657 KHILLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPN---I 733 (1427)
Q Consensus 657 ~~v~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~---~ 733 (1427)
++..++|||||||+|++. ..|++++|++|++.|++ +|++.||+|.++. ++..++.+..+.+..+. .
T Consensus 10 ~~~~~~D~tLRDG~Q~~~-~~~~~~~k~~i~~~L~~--aGv~~IEvG~p~~--------s~~~~~~~~~~~~~~~~~~~~ 78 (310)
T d1sr9a2 10 RAPLWCAVDLRDGNQALI-DPMSPARKRRMFDLLVR--MGYKEIEVGFPSA--------SQTDFDFVREIIEQGAIPDDV 78 (310)
T ss_dssp SCCEEEECTTTHHHHTCS-SCCCHHHHHHHHHHHHH--HTCSEEEEECTTT--------CHHHHHHHHHHHHTTCSCTTC
T ss_pred CCCeeeECCCCccCcCCC-CCCCHHHHHHHHHHHHH--cCCCEEEEeCCcC--------CHHHHHHHHHHHHhccccccc
Confidence 555777999999999986 56999999999999999 7999999975432 33344555555554432 2
Q ss_pred ceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHH------------------HHHHHHHHHHHhcCC
Q psy15244 734 PFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVP------------------NLVKGMDAVQQVTGG 795 (1427)
Q Consensus 734 ~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~------------------~~~~~i~~a~~~G~~ 795 (1427)
....+.+.. ...+..........+...+.++.+.+..+ ......+.+++...
T Consensus 79 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (310)
T d1sr9a2 79 TIQVLTQCR---------PELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPG- 148 (310)
T ss_dssp EEEEEEESC---------HHHHHHHHHHHTTCSEEEEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHSCS-
T ss_pred eeeeeeeec---------hhhhHHHHHhhcCcceeeEEeecchhHHHHHHHhhccHHhhhhhhhhhhhHHHHHHHHhhc-
Confidence 233333221 11122222222223334455565555332 22333344444433
Q ss_pred CcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC------CCCEEEEccccCcCCHHHHHHHHHHHHHHcCC---ce
Q psy15244 796 STIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES------GAQVLCLKDMAGLLKPTAAKLLIGSFREKYPN---IL 866 (1427)
Q Consensus 796 ~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~------Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~---ip 866 (1427)
........+. +.+.+..+.+.+.++.+.++ |++.|+|+||+|.++|.+++++++.+++.+|+ ++
T Consensus 149 -~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~v~~~~~~~~~~~~i~ 221 (310)
T d1sr9a2 149 -TQWRFEYSPE------SYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVI 221 (310)
T ss_dssp -SEEEEEEEEE------TGGGSCHHHHHHHHHHHHHHHCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEE
T ss_pred -ceeEEEEecc------cCCCCcHHHHHHHHHHHHHHhhhhhcCceEEeecccccccchhHHHHHHHHHHHhccCcccee
Confidence 1232222222 33467888877777665553 88999999999999999999999999999974 78
Q ss_pred EEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q psy15244 867 IHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVRELYAP 946 (1427)
Q Consensus 867 i~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~~~~ 946 (1427)
|++|+|||+|||+||+++|+++||++||+|++|||+++||++||+++++|+.+|+++++|+++|.++++++++.+|+++|
T Consensus 222 i~~H~Hn~~Gla~AN~laA~~aG~~~iD~si~GmG~~aGN~~tE~lv~~l~~~g~~~~idl~~L~~~~~~v~~~~~~~~~ 301 (310)
T d1sr9a2 222 LSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVH 301 (310)
T ss_dssp EEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHHSCCCC
T ss_pred eeeccccchhhhhHHHHHHHhccCCEEecCCcccccccCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q psy15244 947 AHNLLWRC 954 (1427)
Q Consensus 947 ~~kpivG~ 954 (1427)
+++|+||.
T Consensus 302 ~~~p~vG~ 309 (310)
T d1sr9a2 302 ERHPYGGD 309 (310)
T ss_dssp TTCTTTST
T ss_pred CCCCCccC
Confidence 99999996
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.9e-36 Score=327.30 Aligned_cols=214 Identities=44% Similarity=0.767 Sum_probs=200.4
Q ss_pred CHHHHHHHHHhCCCCCCCCcc-ccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC
Q psy15244 171 DKVLARDAALKADVPIIPGTT-EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG 249 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~-~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg 249 (1427)
||..+|++|+++|||++||+. ..++|.+++.++++++|||+||||++++||+||++|++.+||.++++.+.+++...++
T Consensus 1 dK~~~~~~~~~~GvP~vp~~~~~~~~s~dea~~~a~~iG~PvivKp~~~~ggrGv~~v~~~~el~~a~~~~~~ea~~~~~ 80 (216)
T d2j9ga3 1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFS 80 (216)
T ss_dssp SHHHHHHHHHHHTCCBCCBCSSCCCSCHHHHHHHHHHHCSSEEEEEEEEETTEEEEEECSHHHHHHHHHHHHHHTC--CC
T ss_pred CHHHHHHHHHHcCcCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEecccccCCceeEeecchhHHHHHHHHHHHHHHHhcC
Confidence 899999999999999877653 3568999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEE
Q psy15244 250 KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT 329 (1427)
Q Consensus 250 ~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~ 329 (1427)
++++++|+||++.+|++++++.|+.|+++.+.+++|+.++++++.++.+|++.++++..+.+.+.+.++++.+++.|++|
T Consensus 81 ~~~vlvE~~i~g~~~~~~~i~~dg~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 160 (216)
T d2j9ga3 81 NDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT 160 (216)
T ss_dssp CCCEEEEECCSSCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEeeeeecCcccceeEEEEcCCCCeeeccccccCcccccCCeEEeccCccccchhhhhhHHHHHHHHHHcCccCcce
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcc
Q psy15244 330 VEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKIT 388 (1427)
Q Consensus 330 VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~ 388 (1427)
+||+++ +|++||||+|||+++++++++++||+|+++.++++++|.+|+ +.|++|.
T Consensus 161 ~e~~~~-~~~~~viEvnpR~~~~~~~~~~~tGvdlv~~~i~~alG~~l~---~~~~~i~ 215 (216)
T d2j9ga3 161 FEFLFE-NGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLS---IKQEEVH 215 (216)
T ss_dssp EEEEEE-TTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC---CCGGGCC
T ss_pred eEeEec-CCeEEEEeecCccccchhhhhHHHCcCHHHHHHHHHCCCCCC---Cchhhcc
Confidence 999998 567999999999999999999999999999999999999875 6677664
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-35 Score=332.87 Aligned_cols=255 Identities=20% Similarity=0.314 Sum_probs=201.2
Q ss_pred HHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcE
Q psy15244 174 LARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDM 253 (1427)
Q Consensus 174 ~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~v 253 (1427)
+++++++++|||+|++. .++|.+++.++++++||||||||++|+||+||++|++.+||.++++++.. .++++++
T Consensus 1 rF~~~l~~lgi~~p~~~--~v~s~~ea~~~a~~iGfPvivKps~~~gG~G~~iv~~~~el~~~~~~a~~----~~~~~~v 74 (259)
T d1a9xa6 1 RFQHAVERLKLKQPANA--TVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVS----VSNDAPV 74 (259)
T ss_dssp HHHHHHHHHTCCCCCEE--ECCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------
T ss_pred ChHHHHHHCCCCCCCce--EECCHHHHHHHHHHhCCCEEEEECCCCCCCccEeecCHHHHHHHhhhhhc----ccccchh
Confidence 47899999999999987 79999999999999999999999999999999999999999999987544 3457899
Q ss_pred EEEeeccCCceEEEEEEecccccEEEeeeeccccccccceE---EEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy15244 254 LVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKV---IQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330 (1427)
Q Consensus 254 lVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~---ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~V 330 (1427)
++|+||++++|++|++++|+++ + .+....|.+++.++.. ....|++.++++.++++.+++.+++++|||.|.+++
T Consensus 75 lie~~i~~~~Eiev~~i~Dg~~-~-~i~~i~e~i~~~gvhsgds~~~~p~~~l~~~~~~~l~~~a~kia~~l~~~G~~~v 152 (259)
T d1a9xa6 75 LLDHFLDDAVEVDVDAICDGEM-V-LIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNV 152 (259)
T ss_dssp EEEBCCTTCEEEEEEEEECSSC-E-EEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhhhcCCCeEEEEEEEEeCCc-E-EEEeeeeccccCcceeEeccccccCccCCHHHHHHHHHHHHHHHHHhhhccceeE
Confidence 9999999999999999999753 3 3455667777776543 345588899999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCcccceEEEEEEeecCCCCCccCCC
Q psy15244 331 EFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKITPQGCAIQCHLRTEDPKRNFQPS 410 (1427)
Q Consensus 331 Eflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i~~~g~ai~~ri~aedp~~~f~P~ 410 (1427)
||+++ ++++||||||||+|++|++++.+||+||+++++++++|.+|.++.+.+. ....++++++.+++.++..++.|.
T Consensus 153 ef~v~-~~~~y~iEvNpR~~~~~~~~~k~tg~~lv~~~~~i~~G~~l~~~~~~~~-~~~~~~~vk~~v~~f~k~~~~d~~ 230 (259)
T d1a9xa6 153 QFAVK-NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKE-VIPPYYSVKEVVLPFNKFPGVDPL 230 (259)
T ss_dssp EEEEC-SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHHHTTCCHHHHTCCSC-CCCSSEEEEEEECGGGGCTTSCCC
T ss_pred EEEEE-CCEEEEEEcccccCCceeeeeHhhCCCHHHHHHHHhcCCCccccccccc-cCCCcEEEEEEcCCccccCCCCCC
Confidence 99996 4679999999999999999999999999999999999999987665543 344688999888754443222222
Q ss_pred CCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHH
Q psy15244 411 TGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRA 466 (1427)
Q Consensus 411 ~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~ra 466 (1427)
.| . ..-| .|.+++.|+|++||+.|+.++
T Consensus 231 lg-----------------------~----emks-tGevm~~g~~~~eA~~Ka~~~ 258 (259)
T d1a9xa6 231 LG-----------------------P----EMRS-TGEVMGVGRTFAEAFAKAQLG 258 (259)
T ss_dssp CC-----------------------S----SCCC-CEEEEEEESSHHHHHHHHHHH
T ss_pred CC-----------------------C----Ceee-eeeEEEEcCCHHHHHHHHHhc
Confidence 11 1 1112 578999999999999999875
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=8.9e-34 Score=310.24 Aligned_cols=213 Identities=46% Similarity=0.832 Sum_probs=198.8
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCC
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKD 251 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~ 251 (1427)
|..||++|+++|||++|++...+.|.+++.++++++|||+||||.+|+||+|++++++.+|+..+++...+++...+++.
T Consensus 1 K~~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ig~P~vvKP~~~~~s~gv~~v~~~~el~~a~~~~~~~~~~~~~~~ 80 (214)
T d1ulza3 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRG 80 (214)
T ss_dssp HHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHHcCCCEEEeeccccCCccceeeeccHHHHHHHHHHHHHHHHhcCCC
Confidence 88999999999999977654578999999999999999999999999999999999999999999999888888888889
Q ss_pred cEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy15244 252 DMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVE 331 (1427)
Q Consensus 252 ~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VE 331 (1427)
.++|||||+|.+++.+.++.|+++++..+++++|+.++++......++++.++++.+.++.+.+.++++++||.|++++|
T Consensus 81 ~viiEe~i~G~e~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~lg~~G~~~ve 160 (214)
T d1ulza3 81 DLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTME 160 (214)
T ss_dssp CEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceeheeecCcceeeEEEEEcCCCeEEEEeccccccCccccceeEEeecccccHHHHHHHHHHHHHHHHHcCCccceEEE
Confidence 99999999977888888999999999999999999999998888888888899999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCccccccccCc
Q psy15244 332 FLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLCQEKI 387 (1427)
Q Consensus 332 flvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~q~~i 387 (1427)
|+++++|++||||+|||+++++++++.++|+|++++++++++|++|+ ++|.+|
T Consensus 161 f~~~~dg~~~~iEin~R~~~~~~~~~~a~Gidl~~~~v~~alG~~l~---~~~~di 213 (214)
T d1ulza3 161 FIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLT---IKQEDV 213 (214)
T ss_dssp EEECTTCCEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC---CCGGGC
T ss_pred EEECCCCCEEEEEecCcCCCchhhhHHHHCcCHHHHHHHHHCCCCCC---CChHhc
Confidence 99999999999999999999999999999999999999999999975 456554
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-34 Score=325.67 Aligned_cols=237 Identities=35% Similarity=0.608 Sum_probs=209.6
Q ss_pred CCHHHHHHHHHhCCCCCCCCcc------------------------ccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeE
Q psy15244 170 GDKVLARDAALKADVPIIPGTT------------------------EPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMR 225 (1427)
Q Consensus 170 ~DK~~~r~~a~~aGVpvp~~~~------------------------~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~ 225 (1427)
|||..+|++|+++|||+.|++. ..+.|.+++.++++++|||+||||++|+||+||+
T Consensus 1 gdK~~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~igfPvvVKP~~~~gs~Gv~ 80 (267)
T d1w96a3 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIR 80 (267)
T ss_dssp CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEE
T ss_pred CCHHHHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHHhcCCCEEEEeecccCCeeEE
Confidence 6999999999999999987541 2467899999999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCH
Q psy15244 226 MVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSV 305 (1427)
Q Consensus 226 iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~ 305 (1427)
+|++.+||.++++.+... +++++++|||||+|.+|++++++.++.|..+.+.++.|..++++.......|++.+++
T Consensus 81 iv~~~~el~~a~~~a~~~----s~~~~vlVEe~I~G~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
T d1w96a3 81 QVEREEDFIALYHQAANE----IPGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKA 156 (267)
T ss_dssp EECSHHHHHHHHHHHHHH----STTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCH
T ss_pred eecccchhhhhhhhhhhh----cccchhhhhhhccchhhhhhhheeccCcceeeecccccccccccccccceeecccCch
Confidence 999999999999876543 5578999999999889999999999999999999999999999988888888888999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEEEcC-CCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCcccccc-
Q psy15244 306 SVRDAITETSVRLAKSLGYSNAGTVEFLLDK-DDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTELGLC- 383 (1427)
Q Consensus 306 e~~~~l~~~a~~l~~alg~~G~~~VEflvd~-dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l~l~- 383 (1427)
+.++++.+.+.++++++|+.|.+++||+++. +|++||||||||++++|++++++||+|+++.++++|+|+||..++-.
T Consensus 157 ~~~~~~~~~a~~~~~~lg~~g~~~vd~~~~~~~g~~yviEiNpR~~~~~~~~~~atGvdl~~~~i~~a~G~pl~~~~~~~ 236 (267)
T d1w96a3 157 ETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIR 236 (267)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccceeeeeeCCCCcEEEEEeccccccceeEEeeeeCCCHHHHHHHHHCCCChhhcchhh
Confidence 9999999999999999999999999999995 78999999999999999999999999999999999999998754211
Q ss_pred --ccCcccceEEEEEEeecCCC-CCccCCC
Q psy15244 384 --QEKITPQGCAIQCHLRTEDP-KRNFQPS 410 (1427)
Q Consensus 384 --q~~i~~~g~ai~~ri~aedp-~~~f~P~ 410 (1427)
+......+.+|++|+++||+ .+.|.|.
T Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~ 266 (267)
T d1w96a3 237 TLYGMNPHSASEIDFEFKTQDATKKQRRPI 266 (267)
T ss_dssp HHTTCCTTCCCCCCTTCCSHHHHHHCCCCC
T ss_pred hhcCCCCCCccCeEeeeeCCCCCCCCCCCC
Confidence 11223456889999999996 4456664
|
| >d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.97 E-value=3.2e-32 Score=267.61 Aligned_cols=121 Identities=37% Similarity=0.798 Sum_probs=117.4
Q ss_pred ceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhc
Q psy15244 390 QGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEE 469 (1427)
Q Consensus 390 ~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e 469 (1427)
+|||||||||||||.++|.|++|+|+.+++|+++|||+|+ .++.|+.|+++|||||||||+||+||++|++||.+||++
T Consensus 2 ~GhAIE~Ri~AEdp~~~F~Ps~G~i~~~~~P~~~~vRvdt-~v~~G~~v~~~YDsmiAKlIv~g~~R~~Ai~rl~~aL~e 80 (123)
T d1ulza1 2 NGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEH-AAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALET 80 (123)
T ss_dssp CSEEEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEE-CCCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEecccCCCCccCCCCcceeeecccccceeecc-cccCCCEeccchhHHHHHHHhhCccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999994 578999999999999999999999999999999999999
Q ss_pred cEEcccccCHHHHHhhcCCcccccCCccccccccCcchhhhcC
Q psy15244 470 TQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQLLERN 512 (1427)
Q Consensus 470 ~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l~~~~ 512 (1427)
+.|.|++||++||++||+||+|++| +++|+||++||++|+..
T Consensus 81 ~~I~Gv~TNi~fl~~il~~~~F~~g-~~~T~fle~~~e~~~~~ 122 (123)
T d1ulza1 81 YEITGVKTTIPLLINIMKEKDFKAG-KFTTKYLEEHPEVFEYE 122 (123)
T ss_dssp CEECSSCCSHHHHHHHHHCHHHHHT-CCCTTTTTTCGGGGCCC
T ss_pred hccCCcCccHHHHHHHhCChhhccC-CcEehhhhcCHhhccCC
Confidence 9999999999999999999999999 99999999999998763
|
| >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Biotin carboxylase (BC), C-domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4.1e-31 Score=257.15 Aligned_cols=116 Identities=29% Similarity=0.664 Sum_probs=111.8
Q ss_pred ceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhc
Q psy15244 390 QGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEE 469 (1427)
Q Consensus 390 ~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e 469 (1427)
+||||||||||||| ++|.|++|+|+.+.+|+++|||+| ++++.|+.|+++||||+||||+||.||++|+++|.+||++
T Consensus 1 rGhAIE~Ri~AEdp-~~f~Ps~G~i~~~~~p~g~gvRvD-s~v~~G~~v~~~YDsmiAKlI~~g~~R~~Ai~~l~~aL~e 78 (116)
T d2j9ga1 1 RGHAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQE 78 (116)
T ss_dssp CSEEEEEEEECBCT-TTCSBCCEECCEEECCCSTTEEEE-CCCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeccCC-CcCccCCeeeeEEECCCCCCeeee-eeeeCCcEeccccchHHHHHhhcCCCHHHHHHHHHHHHHh
Confidence 69999999999999 689999999999999999999999 5579999999999999999999999999999999999999
Q ss_pred cEEcccccCHHHHHhhcCCcccccCCccccccccCcchh
Q psy15244 470 TQVSGVTTNLPFLLNVFDDKKFLSGEALETNFIDDNPQL 508 (1427)
Q Consensus 470 ~~I~Gv~tni~~l~~~l~~~~f~~g~~~~t~~i~~~~~l 508 (1427)
+.|.|++||++||+++|+||+|++| +++|+||+++.+|
T Consensus 79 ~~I~Gv~TN~~~l~~il~~~~f~~g-~~~T~fl~~~l~l 116 (116)
T d2j9ga1 79 LIIDGIKTNVDLQIRIMNDENFQHG-GTNIHYLEKKLGL 116 (116)
T ss_dssp CEEESSCCSHHHHHHHHTCHHHHHC-CCCTTHHHHHHTC
T ss_pred ccccCcCccHHHHHHHhCChhhccC-CceehHHHhhcCC
Confidence 9999999999999999999999999 9999999988654
|
| >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Rudiment single hybrid motif family: BC C-terminal domain-like domain: Acetyl-CoA carboxylase, BC-C subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.5e-30 Score=252.38 Aligned_cols=113 Identities=24% Similarity=0.392 Sum_probs=106.9
Q ss_pred ceEEEEEEeecCCCCCccCCCCCceeeeeCCCCCcccccCCCcCCCceecccCccceEEEEEEcCCHHHHHHHHHHHhhc
Q psy15244 390 QGCAIQCHLRTEDPKRNFQPSTGRLDVFTDPASIGIRVDSSCPYPGLQISPDYDSLLAKIIVHTATYKSSCEKMRRALEE 469 (1427)
Q Consensus 390 ~g~ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~I~~~~Ds~l~kvi~~G~~~~eA~~r~~raL~e 469 (1427)
+|||||||||||||.++|.|++|+|+.++.|.++|||+|+ .++.|+.|+++||||+||||+||+||++|++||.+||++
T Consensus 1 rGhaIE~Ri~AEdP~~~F~Ps~G~i~~~~~p~~~~vR~d~-~~~~G~~v~~~YDsmlAKlI~~g~~R~~Ai~rl~~aL~e 79 (116)
T d1w96a1 1 KGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYF-SVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKE 79 (116)
T ss_dssp CSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSEEEEE-EECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEecccCCCCcccCCceeeEEEEcCCceeeeee-ccccCcccccccChHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999994 578999999999999999999999999999999999999
Q ss_pred cEEcc-cccCHHHHHhhcCCcccccCCccccccccC
Q psy15244 470 TQVSG-VTTNLPFLLNVFDDKKFLSGEALETNFIDD 504 (1427)
Q Consensus 470 ~~I~G-v~tni~~l~~~l~~~~f~~g~~~~t~~i~~ 504 (1427)
+.|.| ++||++||+++|+||+|++| +++|+||++
T Consensus 80 ~~I~G~v~TN~~fL~~iL~~~~F~~g-~~~T~fle~ 114 (116)
T d1w96a1 80 LSIRGDFRTTVEYLIKLLETEDFEDN-TITTGWLDD 114 (116)
T ss_dssp HTTCC----CCHHHHHHHTSHHHHTT-CCCTTHHHH
T ss_pred ceEeccccccHHHHHHHhCChhhccC-CcchHHHHh
Confidence 99999 99999999999999999999 999999975
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=9.5e-29 Score=238.43 Aligned_cols=114 Identities=46% Similarity=0.796 Sum_probs=109.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|++||||+||||||+|++|+|+++|+++|++|++.|+.++|.+++|+++.++ +..+..+|+|++.|+++|++.++|+||
T Consensus 1 m~~kvLIANRGeiA~Ri~ra~~elgi~tvavys~~D~~~~h~~~ade~v~lg-~~~~~~sYl~~~~Ii~~A~~~~~dAiH 79 (114)
T d2j9ga2 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIG-PAPSVKSYLNIPAIISAAEITGAVAIH 79 (114)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEE-CSSGGGTTTCHHHHHHHHHHHTCSEEE
T ss_pred CCceeeEecCCHHHHHHHHHHHHhCCceEEEeccccccccceecCCceeecC-CCchhhhhcCHHHHHHHHHHhCCceee
Confidence 6899999999999999999999999999999999999999999999999998 556778999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhC
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLG 170 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~ 170 (1427)
|||||||||++|+++|+++||.|+||++++++.+|
T Consensus 80 PGyGFLSEn~~Fa~~~~~agi~FIGP~~~~i~~mG 114 (114)
T d2j9ga2 80 PGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114 (114)
T ss_dssp CCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHCCCEEECcCHHHHHHcC
Confidence 99999999999999999999999999999998874
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.95 E-value=8.4e-29 Score=238.81 Aligned_cols=114 Identities=46% Similarity=0.841 Sum_probs=110.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEE
Q psy15244 56 TMEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIH 135 (1427)
Q Consensus 56 ~~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~ 135 (1427)
|+|||||+||||||+|++|+|+++|+++|++|++.|+.++|.+++|++++++. .+.++|+|++.|+++|+++++|+||
T Consensus 1 m~kkvLIANRGEiA~Ri~ra~~elgi~tvav~s~~D~~s~~~~~ad~~~~ig~--~~~~sYln~~~Ii~~A~~~~~daih 78 (114)
T d1ulza2 1 MVNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGT--DPLDTYLNKQRIINLALEVGADAIH 78 (114)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCS--STTHHHHCHHHHHHHHHHTTCCEEE
T ss_pred CCceeeEecCCHHHHHHHHHHHHhcCCeEEEecchhhcCcchhhcceeeecCC--ChhhhhhcHHHHHHHHHHhCCCeEe
Confidence 68999999999999999999999999999999999999999999999999973 4578999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCC
Q psy15244 136 PGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGD 171 (1427)
Q Consensus 136 pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~D 171 (1427)
|||||||||++|+++|++.|+.|+||++++++.++|
T Consensus 79 PGyGFLSEna~Fa~~~~~~gi~FIGP~~~~i~~mGD 114 (114)
T d1ulza2 79 PGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGD 114 (114)
T ss_dssp CCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHS
T ss_pred cchhhhhhHHHHHHHHHHCCCEEECcCHHHHHHhCC
Confidence 999999999999999999999999999999999987
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5.1e-26 Score=245.23 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=166.9
Q ss_pred CHHHHHHHH-HhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC
Q psy15244 171 DKVLARDAA-LKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG 249 (1427)
Q Consensus 171 DK~~~r~~a-~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg 249 (1427)
||..+|++| +++|||+|++. .+.|.+++.++++++|||+||||+.|+||+|+++|++.+|+.++++...... ..+
T Consensus 1 ~~~~~rrla~~~~Gip~p~~~--~v~s~~dl~~~~~~ig~PvVvKP~~g~gs~gv~~v~~~~el~~a~~~~~~~~--~~~ 76 (206)
T d1kjqa3 1 NREGIRRLAAEELQLPTSTYR--FADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGG--RAG 76 (206)
T ss_dssp SHHHHHHHHHTTSCCCBCCEE--EESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHS--GGG
T ss_pred ChHHHHHHHHHHCCCCCCCCe--EECCHHHHHHHHHHhCCCEEEeeccCCccCCceEEcCHHHHHHHHHHHHhhc--ccC
Confidence 788999977 68999999987 7999999999999999999999999999999999999999999998776543 334
Q ss_pred CCcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEE
Q psy15244 250 KDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGT 329 (1427)
Q Consensus 250 ~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~ 329 (1427)
...+++|+++.+..++++.+..+..|........ ..+..+.......|. ..+.+...++.+.+.++.+++++.|.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (206)
T d1kjqa3 77 AGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVG--HRQEDGDYRESWQPQ-QMSPLALERAQEIARKVVLALGGYGLFG 153 (206)
T ss_dssp CCCEEEEECCCCSEEEEEEEEEETTEEEECCCEE--EEEETTEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred cceeeeeeccccceeeeeeeeecCCCceeeccce--eeeccCccceeeccc-cCCHHHHHHHHHHHHhhhhhhhceeeec
Confidence 6789999999877899999888877665543222 111222223333344 5788888999999999999999999999
Q ss_pred EEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCccc
Q psy15244 330 VEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLTEL 380 (1427)
Q Consensus 330 VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~~l 380 (1427)
+||+.+++| +||||||||+++++.+++.++|+|+++.++++++|.|++++
T Consensus 154 ~e~~~~~~~-~~viEin~R~~~~~~~~~~~~~v~~~e~~ir~~~Glp~~~~ 203 (206)
T d1kjqa3 154 VELFVCGDE-VIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGI 203 (206)
T ss_dssp EEEEEETTE-EEEEEEESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCCC
T ss_pred cccccccCC-ceEEEeecCcccccceehhhcCCCHHHHHHHHHcCCCCCCC
Confidence 999998765 99999999999999999999999999999999999998743
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.3e-25 Score=242.16 Aligned_cols=204 Identities=18% Similarity=0.205 Sum_probs=161.8
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
+|..+|++|+++|||+|++. .+++.+++.+++++++||+||||..++||+||+++++.+++.++++.+.........+
T Consensus 1 SK~f~K~~~~~~~IPt~~~~--~~~~~~ea~~~~~~~~~P~VvK~~~~~~gkGv~i~~~~~e~~~a~~~~~~~~~~~~~~ 78 (224)
T d1gsoa3 1 SKAFTKDFLARHKIPTAEYQ--NFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAG 78 (224)
T ss_dssp CHHHHHHHHHHTTCCBCCEE--EESSSSHHHHHHHHHCSSEEEEC------CCEEEESSHHHHHHHHTTTTCSCCTTCTT
T ss_pred CHHHHHHHHHHcCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEeCCcccccceeeehhHHHHHHHHHHHHhcccccccC
Confidence 58999999999999999986 7899999999999999999999999999999999999999999998776543333345
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEee-----ee--ccccccccceEEEEccCCCCCHHHHHHH----HHHHHHHH
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-----ER--DCSMQRRYQKVIQIAPAQDMSVSVRDAI----TETSVRLA 319 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-----er--d~s~qr~~qk~ie~aPa~~l~~e~~~~l----~~~a~~l~ 319 (1427)
+.++|||||. |+|++++++.|+. +++++. .| |+....+.+.+++++|++.+++.+.+++ .+.+.+.+
T Consensus 79 ~~vliEefl~-G~E~s~~~i~dg~-~~~~~~~~~d~kr~~d~~~gp~tggmg~~~P~p~~~~~l~~~~~~~i~~~~~~~~ 156 (224)
T d1gsoa3 79 HRIVIEEFLD-GEEASFIVMVDGE-HVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGM 156 (224)
T ss_dssp CCEEEEECCC-EEEEEEEEEEESS-CEEEEEEEEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHH
T ss_pred ceEEeecccc-cccceeEEEeccC-ceEeeecccccccccccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999 8999999999864 555432 22 5666677889999999987776655544 44556677
Q ss_pred HHcCC--CCeEEEEEEEcCCCcEEEEeeCCCCC-CchhHHHHHhCCCHHHHHHHHHcCCCCcc
Q psy15244 320 KSLGY--SNAGTVEFLLDKDDNFYFIEVNPRLQ-VEHTLSEEITGIDVVQSQIKIAQGKSLTE 379 (1427)
Q Consensus 320 ~alg~--~G~~~VEflvd~dG~~yfIEINpRl~-ge~~vte~~tGiDLv~~~i~iA~G~~l~~ 379 (1427)
++.|+ .|+.+++|+++.+|++||||+|+|++ .+...+......||++.+++++.|. |++
T Consensus 157 ~~~g~~~~G~l~~~~mit~~G~p~vlE~N~R~Gdpe~~~il~~l~~dl~e~~~~~~~g~-L~~ 218 (224)
T d1gsoa3 157 AAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDLETQPIMLRMKSDLVELCLAACESK-LDE 218 (224)
T ss_dssp HHTTCCCEEEEEEEEEEETTCCEEEEEEESSCCTTTHHHHHHHBCSCHHHHHHHHHTTC-GGG
T ss_pred HhcCceeeeeeccceeeeeCCCEEEEEEecCCCCCcceeehhhhcCCHHHHHHHHHhCC-CCC
Confidence 77775 58999999999999999999999997 4554444446779999999999997 543
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=5e-25 Score=241.08 Aligned_cols=204 Identities=15% Similarity=0.173 Sum_probs=150.1
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
+|..+|++|+++|||+|++. .++|.+++.++++++|||+||||.+|+||+||++|++.+++.++++.+.........+
T Consensus 1 sK~~~K~~l~~~gIptp~~~--~~~~~~e~~~~~~~ig~PvVvKP~~~~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~ 78 (220)
T d1vkza3 1 SKVYAKRFMKKYGIRTARFE--VAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVK 78 (220)
T ss_dssp CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCC
T ss_pred CHHHHHHHHHHCCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEeccccccccceeeccHHHHHHHhhhhcccccccccc
Confidence 58999999999999999986 7899999999999999999999999999999999999999999999887655545567
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEee-eec-ccccccc-----ceEEEEccCCCCCHHHH---HHHHHHHHHHHH
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLY-ERD-CSMQRRY-----QKVIQIAPAQDMSVSVR---DAITETSVRLAK 320 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~-erd-~s~qr~~-----qk~ie~aPa~~l~~e~~---~~l~~~a~~l~~ 320 (1427)
..+++|+||+ |+|++++.+.++. ++..+. .++ ......+ ....+..|.+ .+.... +++.+.+.+.+.
T Consensus 79 ~~vliEe~i~-g~e~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~ 155 (220)
T d1vkza3 79 GPVVIDEFLA-GNELSAMAVVNGR-NFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVE 155 (220)
T ss_dssp SCEEEEECCC-SEEEEEEEEEETT-EEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEeeecccc-cccceeEEEEeCC-EEEEcccccccccccccccccccccccccccCC-ccchhhHHHHHHHHHHHHHHh
Confidence 8999999999 8999999998754 443321 111 1111111 1122333332 333333 334444444443
Q ss_pred H--cCCCCeEEEEEEEcCCCcEEEEeeCCCCCC-chhHHHHHhCCCHHHHHHHHHcCCCCccc
Q psy15244 321 S--LGYSNAGTVEFLLDKDDNFYFIEVNPRLQV-EHTLSEEITGIDVVQSQIKIAQGKSLTEL 380 (1427)
Q Consensus 321 a--lg~~G~~~VEflvd~dG~~yfIEINpRl~g-e~~vte~~tGiDLv~~~i~iA~G~~l~~l 380 (1427)
+ +++.|..|+||+++++| +||||+|+|+|. ++.++...+.-||+++++++|+|.+|+.+
T Consensus 156 ~~~~~~~G~~~~d~~~~~~g-p~viEiN~R~G~~~~~~~~~~~~~dl~~~~l~~a~g~~l~~~ 217 (220)
T d1vkza3 156 KEGYAYRGFLYLGLMLHDGD-PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGKMEPV 217 (220)
T ss_dssp HTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTSCCCCC
T ss_pred hhhhhhhccceeEEEeeCCC-EEEEEEECCCCCCcceeeeecccccHHHHHHHHHcCCCcCcC
Confidence 3 34569999999999766 999999999964 22222222333999999999999998743
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=5.6e-25 Score=235.46 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=161.6
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
||..||++++++|||+|++. .+.|.+|+.++++++|||+|+||..|++|.|+.++.+.+++..+.. ..+
T Consensus 1 DK~~~K~~l~~~GIptp~~~--~v~s~~d~~~~~~~ig~P~vvKp~~~~~~~~~~~v~~~~~~~~~~~---------~~~ 69 (198)
T d3etja3 1 DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPA---------ECY 69 (198)
T ss_dssp SHHHHHHHHHHTTCCBCCEE--EECCGGGHHHHHHHHCSCEEEEESSSCBTTBSEEEECGGGGGGSCG---------GGT
T ss_pred CHHHHHHHHHHCCcCCCCce--EECCHHHHHHHHHHcCCCeeeeecccccccceeeecchhhHHHHHh---------ccC
Confidence 89999999999999999997 7999999999999999999999998887776666666666543322 125
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTV 330 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~V 330 (1427)
..+++|+|+++++++++.++.++.+.+....... .............|+ .++++...++.+.+.++++++++.|.+++
T Consensus 70 ~~~i~ee~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 147 (198)
T d3etja3 70 GECIVEQGINFSGEVSLVGARGFDGSTVFYPLTH-NLHQDGILRTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAM 147 (198)
T ss_dssp TTEEEEECCCCSEEEEEEEEECTTSCEEECCCEE-EEEETTEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ceEEEeeeccccccccceeeecccceeeeeceee-ccccccceeeeeecc-ccccchhhhhhhhhhHHHHhhhhcccchh
Confidence 7899999999889999999998888766532221 112222333445565 68999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCCCCc
Q psy15244 331 EFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGKSLT 378 (1427)
Q Consensus 331 Eflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~~l~ 378 (1427)
||+++++ ++||+|+|||++++++++..++|+|+++.+++.++|.||+
T Consensus 148 ~~~~~~~-~~~v~Evn~Rp~~~g~~~~~~~~~s~~e~~~ra~lglpl~ 194 (198)
T d3etja3 148 ECFVTPQ-GLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLP 194 (198)
T ss_dssp EEEEETT-EEEEEEEESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCC
T ss_pred heeecCC-cEEEEEEECCcccccceEeecccCCHHHHHHHHHcCCCCC
Confidence 9999976 5999999999999888999999999999999999999986
|
| >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Acetyl-CoA carboxylase, BC-N subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.1e-26 Score=232.64 Aligned_cols=115 Identities=26% Similarity=0.374 Sum_probs=107.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCEE-----------EEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHH
Q psy15244 54 PKTMEKILIANRSEVAIRVARACNEMGIKS-----------VGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEI 122 (1427)
Q Consensus 54 ~~~~kkVLIagrGeia~riiraa~elGi~~-----------vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~I 122 (1427)
.+|||||||+||||||+|++|+|+++|+++ |+++++.|+.+.|.++||++++++ +..+.++|+|++.|
T Consensus 43 ~~~ikkvLIANRGEIA~Ri~rt~relgi~t~~~~~~~~~v~Va~~~d~D~~s~~v~~aD~~v~l~-g~~~~~sYLn~~~I 121 (170)
T d1w96a2 43 HTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVP-GGTNNNNYANVDLI 121 (170)
T ss_dssp CBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECC-CSSGGGTTTCHHHH
T ss_pred CcccceeeeecCcHHHHHHHHHHHHhcchhcccccccceeEEEecCccccccchhhhhhhhhccC-CCCccchhhhHHHH
Confidence 468999999999999999999999999985 666777788899999999999998 66778899999999
Q ss_pred HHHHHhcCCCEEEeCCCcccccHHHHHHHHHC--CCceeCCCHHHHHHh
Q psy15244 123 ICIAKNNNVDAIHPGYGFLSEREDFAKAVIGA--GLEFIGPAPNVLKTL 169 (1427)
Q Consensus 123 i~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~--Gi~fiGps~eai~~~ 169 (1427)
+++|+++++|+|||||||||||++|+++|+++ ||.|+||++++++.+
T Consensus 122 I~~A~~~~~DAIHPGYGFLSEn~~FA~~~~~a~~giiFIGPs~~~i~~m 170 (170)
T d1w96a2 122 VDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSL 170 (170)
T ss_dssp HHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHS
T ss_pred HHHHHhcCCCEEEechhhhhhCHHHHHHHHHhcCCCEEECcCHHHHHhC
Confidence 99999999999999999999999999999987 999999999999864
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=1.3e-24 Score=240.89 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=142.9
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccC-
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFG- 249 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg- 249 (1427)
||..+|++|+++|||+|+.. . .++++||||||||++|+||+|+++|+|.+||.++++.+.+++...+.
T Consensus 1 DK~~~k~~l~~~Gip~P~~~----~-------~~~~i~~PvVVKP~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~ 69 (238)
T d2r7ka2 1 ERSLEGKLLREAGLRVPKKY----E-------SPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDED 69 (238)
T ss_dssp CHHHHHHHHHHTTCCCCCEE----S-------SGGGCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHH
T ss_pred CHHHHHHHHHHCCCCCcccc----c-------CHhHCCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHhhccCC
Confidence 89999999999999999853 2 24678999999999999999999999999999999988765432222
Q ss_pred CCcEEEEeeccCCceEEEEEEecccccEEEe-------------eeeccccc-----cccceEEEEccCCCCCHHHHHHH
Q psy15244 250 KDDMLVEKYIDRPRHIEVQILGDKYGDVVHL-------------YERDCSMQ-----RRYQKVIQIAPAQDMSVSVRDAI 311 (1427)
Q Consensus 250 ~~~vlVEeyIeggreieVqvl~Dg~G~vv~l-------------~erd~s~q-----r~~qk~ie~aPa~~l~~e~~~~l 311 (1427)
++++++|+||+ |.+++++++.+..+..+.+ ..+.|..+ ..........|++.++.+..+++
T Consensus 70 ~~~v~vEe~i~-G~e~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 148 (238)
T d2r7ka2 70 IANAHIEEYVV-GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQV 148 (238)
T ss_dssp HHHCEEEECCC-SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHH
T ss_pred CCcEEEEEeec-CceEEEEEeecccccceEEEeeccCCccEEEEEEEcCHHheeccCccccCccccccCccccHHHHHHH
Confidence 35799999999 8888887776543332221 11112222 22345555667778999999999
Q ss_pred HHHHHHHHHHc------CCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 312 TETSVRLAKSL------GYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 312 ~~~a~~l~~al------g~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
.+.+.++++++ |+.|++++||++|++|++||||||||++|++++....+++....+...+++|+
T Consensus 149 ~~~~~~i~~~l~~~~~~~~~G~~~ve~~~~~dg~~~viEinpR~~G~~~~~~~~~~~~~~~~~~~~~~g~ 218 (238)
T d2r7ka2 149 FEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGEPLSMGQ 218 (238)
T ss_dssp HHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEESSBCGGGGGGTTCCTTHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHHHhcccCccccccHhhHhhcCCCEEEEEEECCCCCCCcceeccCCCCHHHHhCcchhhh
Confidence 99999999998 89999999999999999999999999999987765444444443333333343
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.89 E-value=9.4e-23 Score=220.72 Aligned_cols=192 Identities=20% Similarity=0.322 Sum_probs=153.9
Q ss_pred HHHHHHHHHhCCCCCCCCccccCC-------CHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHH
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVT-------DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEA 244 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~-------s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea 244 (1427)
|.++|++++++|||+|++. .+. ..+++......++||+||||..|+||+||.+|++.++|.++++....
T Consensus 1 K~~tk~~~~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-- 76 (210)
T d1iowa2 1 KLRSKLLWQGAGLPVAPWV--ALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-- 76 (210)
T ss_dssp HHHHHHHHHHTTCCBCCEE--EEEHHHHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT--
T ss_pred CHHHHHHHHHcCCCCCCeE--EEechhhcccchHHHHHHHHhcCCCEEEeeccccCceecccccchhhhhHHHHHhhc--
Confidence 8899999999999999986 343 23455566778999999999999999999999999999999875432
Q ss_pred HHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccccccc---ceEEEEccCCCCCHHHHHHHHHHHHHHHHH
Q psy15244 245 LASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY---QKVIQIAPAQDMSVSVRDAITETSVRLAKS 321 (1427)
Q Consensus 245 ~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~---qk~ie~aPa~~l~~e~~~~l~~~a~~l~~a 321 (1427)
.+..+++|+|++ |+|+++.++++..+..+.+...++....+. .......+....+.....++.+.+.+++++
T Consensus 77 ----~~~~vlve~~i~-g~e~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (210)
T d1iowa2 77 ----HDEEVLIEKWLS-GPEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTT 151 (210)
T ss_dssp ----TCSEEEEEECCC-CCEEEEEEETTEECCCEEEECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ----cCcccccccccc-CceeEEEeecCcccceeEEecccceeeecccccccccccccccccccccchhHHHHHHHHHHH
Confidence 357899999999 899999999887666666655555444321 122233334468899999999999999999
Q ss_pred cCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc----hhHHHHHhCCCHHHHHHHHH
Q psy15244 322 LGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE----HTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 322 lg~~G~~~VEflvd~dG~~yfIEINpRl~ge----~~vte~~tGiDLv~~~i~iA 372 (1427)
+++.|.+++||++|++|++||||||+|++.. .+.....+|+|+.+...++.
T Consensus 152 ~~~~g~~~vdf~~d~~g~~~~lEiN~~pg~~~~s~~~~~~~~~Gi~~~~li~~ii 206 (210)
T d1iowa2 152 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 206 (210)
T ss_dssp HTCCSEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred hCCCCceEEEEEECCCCCEEEEEEeCCCCCCCccHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999754 34445569999888766554
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.88 E-value=6.1e-22 Score=217.01 Aligned_cols=188 Identities=20% Similarity=0.213 Sum_probs=147.7
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCC----CHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVT----DVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALA 246 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~----s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~ 246 (1427)
||..+|++++++|||+|++. .+. +.+.+.++++.+|||+||||..|+||+||.++++.+||..+++.+...
T Consensus 1 dK~~~k~~l~~~gi~tp~~~--~~~~~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~GV~~~~~~~el~~~~~~~~~~--- 75 (228)
T d1ehia2 1 DKALTKELLTVNGIRNTKYI--VVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY--- 75 (228)
T ss_dssp SHHHHHHHHHTTTCCCCCEE--EECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT---
T ss_pred CHHHHHHHHHHcCCCCCCEE--EEchhhcChHHHHHHHHHhCCCEEEEEeccCCCccceeccccchhhhhhhhhccc---
Confidence 89999999999999999986 333 223456677899999999999999999999999999999998875432
Q ss_pred ccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccccccc-------------ceEEEEccCCCCCHHHHHHHHH
Q psy15244 247 SFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY-------------QKVIQIAPAQDMSVSVRDAITE 313 (1427)
Q Consensus 247 ~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~-------------qk~ie~aPa~~l~~e~~~~l~~ 313 (1427)
...+++|+|+.+++++++.++.++.+.+..+....+...... .......|. .++++..+++.+
T Consensus 76 ---~~~~liee~i~g~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~~~i~~ 151 (228)
T d1ehia2 76 ---DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPA-QLSPEVTKEVKQ 151 (228)
T ss_dssp ---CSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSC-CCCHHHHHHHHH
T ss_pred ---ccccccceEEeccceEEEEEeeCCCcceeeeeeeeccccccccceeeeeccccccccccccchh-hhhHHHHHHHHH
Confidence 568999999998899999888876655444444333222111 112234444 799999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc-h---hHHHHHhCCCHHHH
Q psy15244 314 TSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE-H---TLSEEITGIDVVQS 367 (1427)
Q Consensus 314 ~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge-~---~vte~~tGiDLv~~ 367 (1427)
.+.++.+++|+.|.+++||++|++|++||||||+|++-. + +..-..+|+|+.+.
T Consensus 152 ~~~~~~~~lg~~~~~~iD~~~d~~g~~~~lEvN~~Pg~~~~s~~~~~~~~~G~~~~~l 209 (228)
T d1ehia2 152 MALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKL 209 (228)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHH
T ss_pred HHHHHHhhhhcCCeeeEEEEEcCCCcEEEEEecCCCCCCcccHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999732 2 22223489997655
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.87 E-value=5.1e-22 Score=215.02 Aligned_cols=185 Identities=21% Similarity=0.310 Sum_probs=143.8
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
||..+|.+++++|||||++. .+.+.++ ..+++++||+||||+.|+||+||.+|++.+||..+++.+... .
T Consensus 1 DK~~~~~~~~~~Gi~tP~~~--~~~~~~~--~~~~~~~fP~viKP~~gg~s~Gv~~v~~~~el~~~~~~~~~~------~ 70 (211)
T d1e4ea2 1 DKSLTYIVAKNAGIATPAFW--VINKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY------D 70 (211)
T ss_dssp SHHHHHHHHHHTTCBCCCEE--EECTTCC--CCGGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT------C
T ss_pred CHHHHHHHHHHCCCCCCCeE--EECchhH--HHHHhcCCCEEEeeccccCcchhccccccccchhhccccccc------c
Confidence 89999999999999999987 4544332 345789999999999999999999999999999998875432 4
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEeeee------cccccc------ccceEEEEccCCCCCHHHHHHHHHHHHHH
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYER------DCSMQR------RYQKVIQIAPAQDMSVSVRDAITETSVRL 318 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~er------d~s~qr------~~qk~ie~aPa~~l~~e~~~~l~~~a~~l 318 (1427)
..+++|+|++ ++++++.++.+..+.+...... .+.... .........|+ .+++...+++.+.+.++
T Consensus 71 ~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~i~~~a~~~ 148 (211)
T d1e4ea2 71 SKILIEQAVS-GCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPA-DLSAEERGRIQETVKKI 148 (211)
T ss_dssp SSEEEEECCC-SEEEEEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSC-SSCHHHHHHHHHHHHHH
T ss_pred cccccccccc-cccceeeccCCCcceeeeeceeeccccchhhhhhhhhhcccccceeeeccc-cccHhhhhhhHHHHHHH
Confidence 6799999999 9999999998866543321110 011110 11234566677 57889999999999999
Q ss_pred HHHcCCCCeEEEEEEEcCCCcEEEEeeCCCCCCc--hhHHH--HHhCCCHHHH
Q psy15244 319 AKSLGYSNAGTVEFLLDKDDNFYFIEVNPRLQVE--HTLSE--EITGIDVVQS 367 (1427)
Q Consensus 319 ~~alg~~G~~~VEflvd~dG~~yfIEINpRl~ge--~~vte--~~tGiDLv~~ 367 (1427)
++++|+.|++++||+++++|++||||||+|++.. ..+.+ ...|+|+.+.
T Consensus 149 ~~~lg~~g~~~id~~~~~~g~~~viEiN~~pg~~~~s~~~~~~~~~G~~~~~l 201 (211)
T d1e4ea2 149 YKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPEL 201 (211)
T ss_dssp HHHTTCEEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHH
T ss_pred HHhhccCCeeEEEEEEcCCCCEEEEEEeCCCCCCCccHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999988732 22323 3489987543
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.5e-21 Score=207.24 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=127.4
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCC
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKD 251 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~ 251 (1427)
|+.++++|+++|||+|++. .+.|.+++.++++++|||+|+||+.|+||+||.++.+.+++....... ++...+++.
T Consensus 1 K~~~~~~l~~~GipvP~t~--~~~~~~~~~~~~~~~g~P~ivKP~~g~~g~gv~~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (192)
T d1uc8a2 1 KWATSVALAKAGLPQPKTA--LATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXK--EVLGGFQHQ 76 (192)
T ss_dssp HHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC--------------CTTTT
T ss_pred CHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhCCCEEEECCcCCcccceeeccccccchhhHHHH--HHHhccCCC
Confidence 8999999999999999986 789999999999999999999999999999998887777666544432 334456678
Q ss_pred cEEEEeeccCCceEEEEEEecccccEEEeeeeccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy15244 252 DMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVE 331 (1427)
Q Consensus 252 ~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VE 331 (1427)
++++||||++ .++++.++..+ |.++....+.....+.........+....+. .....+.++.+++++ |.+++|
T Consensus 77 ~~lvqefi~g-~~~~~~v~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-g~~~vD 149 (192)
T d1uc8a2 77 LFYIQEYVEK-PGRDIRVFVVG-ERAIAAIYRRSAHWITNTARGGQAENCPLTE----EVARLSVKAAEAVGG-GVVAVD 149 (192)
T ss_dssp CEEEEECCCC-SSCCEEEEEET-TEEEEEEEC--------------CEECCCCH----HHHHHHHHHHHHTTC-SEEEEE
T ss_pred CEEEEEecCC-CCeeEEEEEEC-CEEEeEEEeeecccccccccccccccccchh----hhhhhhhhHHHhhhc-cccceE
Confidence 8999999994 44455555543 3455443322111111111111111112332 233444555555544 889999
Q ss_pred EEEcCCCcEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHHcCC
Q psy15244 332 FLLDKDDNFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIAQGK 375 (1427)
Q Consensus 332 flvd~dG~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA~G~ 375 (1427)
|+++++| +||||||||++.++ ++..+|+|+.+.+++.|++.
T Consensus 150 ~~~~~~~-~~vlEiN~r~g~~~--~~~~~G~d~~~~ii~~a~~l 190 (192)
T d1uc8a2 150 LFESERG-LLVNEVNHTMEFKN--SVHTTGVDIPGEILKYAWSL 190 (192)
T ss_dssp EEEETTE-EEEEEEETTCCCTT--HHHHHCCCHHHHHHHHHHHT
T ss_pred EEecCCC-EEEEEEcCCCchhH--HHHHHCcCHHHHHHHHHHHh
Confidence 9999755 99999999998754 56789999999999999875
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.85 E-value=6.6e-22 Score=217.98 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=126.5
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCC
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGK 250 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~ 250 (1427)
||..+|++|+++|||+|+.. .. +++++||+||||..|+||+|+++|++.+++.++++.+....... ..
T Consensus 1 DK~~~k~~l~~~Gip~P~~~----~~-------~~~i~~P~IVKP~~g~gs~Gv~~v~~~~e~~~~~~~~~~~~~~~-~~ 68 (235)
T d2r85a2 1 DRNLERKWLKKAGIRVPEVY----ED-------PDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE-DL 68 (235)
T ss_dssp SHHHHHHHHHHTTCCCCCBC----SC-------GGGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGG-GC
T ss_pred CHHHHHHHHHHcCCCCchhh----hC-------HHHcCCCEEEEECCCCCCCCeEEEechHHHHHHHHHHHhhhhhC-CC
Confidence 89999999999999999843 22 35689999999999999999999999999999998765322221 24
Q ss_pred CcEEEEeeccCCceEEEEEEecccccEEEeee---e-----------cccccccc----ceEEEEccCCCCCHHHHHHHH
Q psy15244 251 DDMLVEKYIDRPRHIEVQILGDKYGDVVHLYE---R-----------DCSMQRRY----QKVIQIAPAQDMSVSVRDAIT 312 (1427)
Q Consensus 251 ~~vlVEeyIeggreieVqvl~Dg~G~vv~l~e---r-----------d~s~qr~~----qk~ie~aPa~~l~~e~~~~l~ 312 (1427)
.++++|+|++ |.++.++.+.+.......+.. + .+..++.+ .......|+..++.+..+++.
T Consensus 69 ~~~iiee~i~-G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (235)
T d2r85a2 69 KNIQIQEYVL-GVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVI 147 (235)
T ss_dssp CSEEEEECCC-CEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHH
T ss_pred cchhHHhhcC-CeEEEEEEeecccccceEEEEeecCCcceeeEEEeccceeEecccCCCCcceeeccCcccchhHHHHHH
Confidence 6899999999 788888887664332222211 0 01111111 122333455568888888888
Q ss_pred HHHHHHHHHc-----CCCCeEEEEEEEcCCCcEEEEeeCCCCCCchhHH
Q psy15244 313 ETSVRLAKSL-----GYSNAGTVEFLLDKDDNFYFIEVNPRLQVEHTLS 356 (1427)
Q Consensus 313 ~~a~~l~~al-----g~~G~~~VEflvd~dG~~yfIEINpRl~ge~~vt 356 (1427)
+.+.++++++ ++.|++|+||++|+||++||||||||++|+.++.
T Consensus 148 e~~~~~~~~l~~~~~~~~G~~~ve~~~~~dg~~~viEiNpR~~Gg~~~~ 196 (235)
T d2r85a2 148 EAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAGTNIF 196 (235)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEEEEECSCCGGGGGG
T ss_pred HHHHHHHHHHHHhcCCceeeeeEEEEEcCCCCEEEEEEeCCCCCCCcce
Confidence 8888888877 6889999999999999999999999999886554
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=99.71 E-value=8.6e-18 Score=152.06 Aligned_cols=74 Identities=32% Similarity=0.516 Sum_probs=70.3
Q ss_pred CCCCCCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEE
Q psy15244 1352 ADSDTAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVL 1425 (1427)
Q Consensus 1352 a~~~~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i 1425 (1427)
++....++|.|||||+|++|+|++||+|++||+|+++|+|||+++|.||++|+|+++++++||.|+.||+|++|
T Consensus 3 ~~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i 76 (77)
T d1dcza_ 3 AGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp SSCCCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred CCCCCCCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999987
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.3e-17 Score=178.07 Aligned_cols=193 Identities=21% Similarity=0.179 Sum_probs=131.8
Q ss_pred CCHHHHHHhCCHHH--HHHHH--HhC---CCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHH
Q psy15244 161 PAPNVLKTLGDKVL--ARDAA--LKA---DVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAI 233 (1427)
Q Consensus 161 ps~eai~~~~DK~~--~r~~a--~~a---GVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL 233 (1427)
+|++++..|.||.. .+.++ +.. ++|.+.. .+..+..++....+||+|+||..|+||+||.++++.+++
T Consensus 1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~-----~~~~~~~~~~~~~~~PvVvKP~~g~~g~Gv~~v~~~~~l 75 (206)
T d1i7na2 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQ-----TYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDF 75 (206)
T ss_dssp SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCC-----EEESSGGGGSSCCCSSEEEEESSCSTTTTEEEECSHHHH
T ss_pred CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeec-----ccccchhHHhhhcCCceEEecCCCCCCCCeEEEeecchh
Confidence 57899999999943 23333 332 3333332 222333445556799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEeeccCCceEEEEEEecccccEEEeeeecccccccc--ceEEEEccCCCCCHHHHHHH
Q psy15244 234 EENFKRAQSEALASFGKDDMLVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQRRY--QKVIQIAPAQDMSVSVRDAI 311 (1427)
Q Consensus 234 ~~a~~~a~~ea~~~fg~~~vlVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr~~--qk~ie~aPa~~l~~e~~~~l 311 (1427)
..+++.+... +..+++|+||++.+++.|.++++ .++....+..+...+. .......+. ..+ ++
T Consensus 76 ~~~~~~~~~~------~~~~~vqe~I~~~~dirv~vig~---~~~~~~~~~~~~~~~~n~~~~~~~~~~--~~~----~~ 140 (206)
T d1i7na2 76 QDIASVVALT------QTYATAEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKTNTGSAMLEQIA--MSD----RY 140 (206)
T ss_dssp HHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETT---EEEEEEEESSCTTTSCSCCCSSEEEEC--CCH----HH
T ss_pred hhHHHHHhhc------cCeEEEEEeecccceEEEEEEec---ceeEEEeeccccccccccccCcccccc--CCh----HH
Confidence 9998877654 56899999999778999999854 3555444433322111 111111122 233 44
Q ss_pred HHHHHHHHHHcCCCCeEEEEEEEcCCCcEEEEeeCC---CCCCchhHHHHHhCCCHHHHHHHHHc
Q psy15244 312 TETSVRLAKSLGYSNAGTVEFLLDKDDNFYFIEVNP---RLQVEHTLSEEITGIDVVQSQIKIAQ 373 (1427)
Q Consensus 312 ~~~a~~l~~alg~~G~~~VEflvd~dG~~yfIEINp---Rl~ge~~vte~~tGiDLv~~~i~iA~ 373 (1427)
.+.+.++++.++..|.+.|||+++++|++||+|||+ .+.+++.........|++...++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~gvD~~~~~dG~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~~~l 205 (206)
T d1i7na2 141 KLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 205 (206)
T ss_dssp HHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhccccceeeEEEEEcCCCCEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 556677777888888999999999999999999996 44456666555556667766666553
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=5e-17 Score=147.40 Aligned_cols=69 Identities=33% Similarity=0.522 Sum_probs=66.2
Q ss_pred CceecCCCeEEE-------EEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1358 GEIGAPMPGNII-------EVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1358 ~~V~APm~G~v~-------~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..|+|||+|+++ +++|++||+|++||+|++||||||+++|+||.+|+|++++++.|+.|+.||+|++||
T Consensus 5 ~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 369999999996 788999999999999999999999999999999999999999999999999999986
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.49 E-value=1.7e-14 Score=130.79 Aligned_cols=64 Identities=27% Similarity=0.472 Sum_probs=62.3
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEeC
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~~ 1427 (1427)
+.|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|+.|++|+.|+.
T Consensus 11 ~~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~ 74 (79)
T d1iyua_ 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp SEEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred CCEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEec
Confidence 6899999999999999999999999999999999999999999999999999999999999973
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.4e-13 Score=125.06 Aligned_cols=63 Identities=35% Similarity=0.495 Sum_probs=60.8
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEeC
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLDV 1427 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~~ 1427 (1427)
.++|++|+|++||.|++||+|+++|+|||+++|.||.+|+|+++++++|+.|..|++|+.|+.
T Consensus 14 ~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~ 76 (80)
T d1qjoa_ 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence 469999999999999999999999999999999999999999999999999999999999873
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=99.38 E-value=1.8e-13 Score=123.78 Aligned_cols=62 Identities=27% Similarity=0.413 Sum_probs=60.7
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|+.|++|+.|+
T Consensus 15 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~ 76 (79)
T d1ghja_ 15 DGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLT 76 (79)
T ss_dssp CEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEEC
T ss_pred EEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999999999986
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.36 E-value=5.1e-14 Score=127.65 Aligned_cols=62 Identities=31% Similarity=0.401 Sum_probs=60.5
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|+++++++||.|+.|++|+.|+
T Consensus 15 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie 76 (80)
T d1laba_ 15 EGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 76 (80)
T ss_dssp SEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBB
T ss_pred eEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999999999886
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=7.8e-13 Score=121.56 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=60.8
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|+.|++|+.|+
T Consensus 18 eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~ 79 (87)
T d1k8ma_ 18 EVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE 79 (87)
T ss_dssp CEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEE
T ss_pred eEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 49999999999999999999999999999999999999999999999999999999999987
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=99.27 E-value=5.1e-13 Score=121.55 Aligned_cols=63 Identities=35% Similarity=0.552 Sum_probs=61.3
Q ss_pred CCeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1364 MPGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1364 m~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.+++|++|+|++||.|++||+|+++|+|||+++|.||.+|+|+++++++|+.|..|++|++|+
T Consensus 14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie 76 (81)
T d1gjxa_ 14 ENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVE 76 (81)
T ss_dssp SSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEEC
T ss_pred cEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999987
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=5e-13 Score=120.94 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=60.4
Q ss_pred CeEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1365 PGNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1365 ~G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~ 77 (80)
T d1pmra_ 16 DATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp CEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred EEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999999999875
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.5e-11 Score=114.68 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=59.0
Q ss_pred eEEEEEEecCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEecCCC-eeCCCCEEEEEe
Q psy15244 1366 GNIIEVKVKVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFVEVGG-QVAQNDLVVVLD 1426 (1427)
Q Consensus 1366 G~v~~v~V~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~L~~i~ 1426 (1427)
|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+.|.
T Consensus 20 g~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~ 81 (102)
T d1y8ob1 20 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (102)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred EEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999997 599999999883
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=4.3e-08 Score=94.00 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=85.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
..||.|+|+|..|+.++.+|+++|+++++++.+++ ++....||+.+.. +|.|.+.+.+++.+.++|.|.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~--~PA~~va~~~i~~--------~~~d~~~l~~~~~~~~~DviT- 79 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD--APAMHVAHRSHVI--------NMLDGDALRRVVELEKPHYIV- 79 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT--CGGGGGSSEEEEC--------CTTCHHHHHHHHHHHCCSEEE-
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC--CchhhcCCeEEEC--------CCCCHHHHHHHHHhhCCceEE-
Confidence 45999999999999999999999999998877666 7888899998774 488999999999999999994
Q ss_pred CCCcccccHHHHHHHHHCCCceeCCCHHHHHHh
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTL 169 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~ 169 (1427)
|+|..-+.+..+.+++.|+++ -|++++++++
T Consensus 80 -~E~EnI~~~~L~~le~~g~~v-~Ps~~al~it 110 (111)
T d1kjqa2 80 -PEIEAIATDMLIQLEEEGLNV-VPCARATKLT 110 (111)
T ss_dssp -ECSSCSCHHHHHHHHHTTCEE-SSCHHHHHHH
T ss_pred -EEecCcCHHHHHHHHHCCCeE-CCCHHHHHhh
Confidence 666334457788999999985 5999999875
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.7e-08 Score=96.66 Aligned_cols=106 Identities=18% Similarity=0.340 Sum_probs=93.0
Q ss_pred CCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHH
Q psy15244 57 MEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICI 125 (1427)
Q Consensus 57 ~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~i 125 (1427)
.+||||+|.|++ +...+++++++|+++++|.+++...+.....||+.|..| +..+.+.++
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~aD~lYfep---------lt~e~v~~I 74 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEP---------VTLEDVLEI 74 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCC---------CSHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhhcCceEEcc---------CCHHHHHHH
Confidence 679999999875 335899999999999999999999999999999999976 789999999
Q ss_pred HHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCCHHHHHHhCCH
Q psy15244 126 AKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGDK 172 (1427)
Q Consensus 126 a~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK 172 (1427)
+++.++|+|++.+|--.. -.++..+++.|++++|.+++++..+-|+
T Consensus 75 i~~E~p~~ii~~~GGQta-lnla~~L~~~gv~iLGt~~~~Id~aEDR 120 (121)
T d1a9xa4 75 VRIEKPKGVIVQYGGQTP-LKLARALEAAGVPVIGTSPDAIDRAEDR 120 (121)
T ss_dssp HHHHCCSEEECSSSTHHH-HTTHHHHHHTTCCBCSSCHHHHHHHHSH
T ss_pred HHHhCCCEEEeehhhhhH-HHHHHHHHHcCCcEECCCHHHHHHHHCc
Confidence 999999999999885322 1467889999999999999999988775
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=4.4e-08 Score=95.01 Aligned_cols=108 Identities=17% Similarity=0.292 Sum_probs=88.8
Q ss_pred CCCCCCCEEEEEcCCHH-----------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHH
Q psy15244 52 PPPKTMEKILIANRSEV-----------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIP 120 (1427)
Q Consensus 52 ~~~~~~kkVLIagrGei-----------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~ 120 (1427)
|.....+||||+|.|++ +..+++++++.|+++++|.+++.+.+.....+|+.|..| ++.+
T Consensus 2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lYfeP---------lt~e 72 (127)
T d1a9xa3 2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEP---------IHWE 72 (127)
T ss_dssp CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSC---------CCHH
T ss_pred CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceeeeec---------CCHH
Confidence 33455899999999875 346899999999999999999999999999999999976 8899
Q ss_pred HHHHHHHhcCCCEEEeCCCcccccHHHHHH------HHHCCCceeCCCHHHHHHh
Q psy15244 121 EIICIAKNNNVDAIHPGYGFLSEREDFAKA------VIGAGLEFIGPAPNVLKTL 169 (1427)
Q Consensus 121 ~Ii~ia~~~~vDaI~pg~gflsE~~~~a~~------~e~~Gi~fiGps~eai~~~ 169 (1427)
.+.++.++.++|+|+|.+|-..-. .++.. +++.|++++|.++++++.+
T Consensus 73 ~v~~Ii~~E~pd~il~~~GGQtal-nla~~L~~~giL~~~~v~iLGt~~~sId~a 126 (127)
T d1a9xa3 73 VVRKIIEKERPDAVLPTMGGQTAL-NCALELERQGVLEEFGVTMIGATADAIDKA 126 (127)
T ss_dssp HHHHHHHHHCCSEEECSSSHHHHH-HHHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred HHHHHHHHhCcCCeEEEeeeehHh-HHHHHHHHcCcHHhcCCeEECCCHHHHHHh
Confidence 999999999999999998842111 23333 4566899999999999753
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=1.5e-07 Score=99.04 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=112.6
Q ss_pred CCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcEEEEeeccC--Cc
Q psy15244 186 IIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDMLVEKYIDR--PR 263 (1427)
Q Consensus 186 vp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~vlVEeyIeg--gr 263 (1427)
+|++. ...|.+++.+|.++.| |+|+||..|++|+|+.++.+.+........ .........+++|+|++. ++
T Consensus 13 ~P~Tl--it~~~~~~~~f~~~~g-~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~~~~ 85 (192)
T d1gsaa2 13 TPETL--VTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAE----TLTEHGTRYCMAQNYLPAIKDG 85 (192)
T ss_dssp SCCEE--EESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHH----HHTTTTTSCEEEEECCGGGGGC
T ss_pred CCCeE--EECCHHHHHHHHHHcC-CeEEEEcCCCeEEEEEEeecCchhhhHHHH----HHHhcCccccccccccccccCc
Confidence 67765 6789999999999987 999999999999999999765443322211 112234567899999985 46
Q ss_pred eEEEEEEecccccEEEeeee-----ccccccccceEEEEccCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCC
Q psy15244 264 HIEVQILGDKYGDVVHLYER-----DCSMQRRYQKVIQIAPAQDMSVSVRDAITETSVRLAKSLGYSNAGTVEFLLDKDD 338 (1427)
Q Consensus 264 eieVqvl~Dg~G~vv~l~er-----d~s~qr~~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~alg~~G~~~VEflvd~dG 338 (1427)
++.+.+++++- +.....| +...........+..+ +++ ..++++..+.++++++|+. .+.||++ ++
T Consensus 86 d~Rv~vv~~~~--~~a~~r~~~~~~~~~~n~~~Gg~~~~~~---~~~-~~~~~a~~~~~~l~~~gl~-~~gVDii---~~ 155 (192)
T d1gsaa2 86 DKRVLVVDGEP--VPYCLARIPQGGETRGNLAAGGRGEPRP---LTE-SDWKIARQIGPTLKEKGLI-FVGLDII---GD 155 (192)
T ss_dssp EEEEEEETTEE--CSEEEEEECCSSCSCCCGGGTCEEEEEE---CCH-HHHHHHHHHHHHHHHTTCC-EEEEEEE---TT
T ss_pred eeEEEEECCcc--eEEEEEecccCCcchhhhhccCcceeec---ccH-HHHHHHHHHHHHHHhhcCc-eEEEEee---CC
Confidence 78888776532 1122222 1111112222222222 233 3356777777788878875 6779987 23
Q ss_pred cEEEEeeCCCCCCchhHHHHHhCCCHHHHHHHHH
Q psy15244 339 NFYFIEVNPRLQVEHTLSEEITGIDVVQSQIKIA 372 (1427)
Q Consensus 339 ~~yfIEINpRl~ge~~vte~~tGiDLv~~~i~iA 372 (1427)
|++|||+--.++..-.+.+||+|+.+..++..
T Consensus 156 --~~~EiNv~s~~g~~~l~~~~g~~ia~~ivd~l 187 (192)
T d1gsaa2 156 --RLTEINVTSPTCIREIEAEFPVSITGMLMDAI 187 (192)
T ss_dssp --EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHH
T ss_pred --eEEEEEcCCcHHHHHHHHHHCCCHHHHHHHHH
Confidence 78999986666677788999999999988753
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=2.7e-06 Score=92.23 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC-cEEEeecCCCCCc----CeEEecCHHHHHHHHHHHHHHHHH
Q psy15244 172 KVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF-PVILKAAFGGGGR----GMRMVANKDAIEENFKRAQSEALA 246 (1427)
Q Consensus 172 K~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGGr----GV~iV~s~eeL~~a~~~a~~ea~~ 246 (1427)
-+.+|++|+++|||+|++. .+.|.+|+.+.++++|| |+|+|+.-..|+| ||+++.+.+|..++..........
T Consensus 5 E~eaK~lL~~yGIpvp~~~--~a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~~a~~~~~~~~~ 82 (238)
T d2nu7b2 5 EYQAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLV 82 (238)
T ss_dssp HHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHhCCCcEEEEEeecccccccceEEEeccccHHHHHHHHHHhCccee
Confidence 4678999999999999997 78999999999999996 9999985444444 899999999988777654321110
Q ss_pred cc-----C--CCcEEEEeeccCCceEEEEEEeccc-ccEEEe
Q psy15244 247 SF-----G--KDDMLVEKYIDRPRHIEVQILGDKY-GDVVHL 280 (1427)
Q Consensus 247 ~f-----g--~~~vlVEeyIeggreieVqvl~Dg~-G~vv~l 280 (1427)
.. | -..+++|+.++.++|+.+.+..|.. |.++.+
T Consensus 83 ~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~ 124 (238)
T d2nu7b2 83 TYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFM 124 (238)
T ss_dssp CTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEE
T ss_pred eeccccCCcccceeeecceeecccceEEEEEEeccCCceEEE
Confidence 00 0 2369999999988999999998865 444433
|
| >d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Thermococcus kodakaraensis [TaxId: 311400]
Probab=97.91 E-value=5.5e-06 Score=84.90 Aligned_cols=156 Identities=14% Similarity=0.162 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCCcEEEeecCCCCCcCeEEecCHHHHHHHHHHHHHHHHHccCCCcE
Q psy15244 174 LARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEFPVILKAAFGGGGRGMRMVANKDAIEENFKRAQSEALASFGKDDM 253 (1427)
Q Consensus 174 ~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGV~iV~s~eeL~~a~~~a~~ea~~~fg~~~v 253 (1427)
..+++|+++|||.|+-. +++++ ++.-|||||-..-.||||-+++.|.++.+.... ...+.
T Consensus 2 l~~k~Le~AGip~Pk~~-----~Pedi-----~~d~~ViVK~~gAkggrGyFia~~~e~~~~~~~----------~~e~~ 61 (213)
T d2pbza2 2 LQDKALEGAGIPRVEVV-----EPEDA-----KPDELYFVRIEGPRGGSGHFIVEGSELEERLST----------LEEPY 61 (213)
T ss_dssp HHHHHHHHHTCCBCCBC-----CSCCC-----CSSCCEEEECCC------------EECSCCCC--------------CC
T ss_pred hhHHHHHhCCCCCCccc-----Ccccc-----CCCceEEEEeccccCcceEEEEcCHHHHHhhhh----------cccce
Confidence 35789999999999843 23331 235799999998889999999998765432221 13578
Q ss_pred EEEeeccCCceEEEEEEecccccEEEeeeecccccc---------c--cceEEEEccCCCCCHHHHHHHHHHHHHHHHHc
Q psy15244 254 LVEKYIDRPRHIEVQILGDKYGDVVHLYERDCSMQR---------R--YQKVIQIAPAQDMSVSVRDAITETSVRLAKSL 322 (1427)
Q Consensus 254 lVEeyIeggreieVqvl~Dg~G~vv~l~erd~s~qr---------~--~qk~ie~aPa~~l~~e~~~~l~~~a~~l~~al 322 (1427)
.|||||- |-.+-++.+.+.=-+-+.+..-|-..+. . .--+....|+ .+-+.+.+++.+.+.+++++.
T Consensus 62 ~IeEyv~-G~~~~~~yFySpi~~~lEllg~DrR~~~~dg~~r~pa~~~~~~v~Gn~p~-viRESLL~~vf~~ge~fV~a~ 139 (213)
T d2pbza2 62 RVERFIP-GVYLYVHFFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAI-ALRESLLPQLYDYGLAFVRTM 139 (213)
T ss_dssp EEEECCC-SCEEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEEEC-EECGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEec-cceeeeeeeccccccceeeEeeeeeeecccccccccccCCCeEEEcCccc-eehHHHHHHHHHHHHHHHHHH
Confidence 9999999 6666666554322222222211111110 0 0123444566 477888899999888877654
Q ss_pred ------CCCCeEEEEEEEcCCCcEEEEeeCCCCCCch
Q psy15244 323 ------GYSNAGTVEFLLDKDDNFYFIEVNPRLQVEH 353 (1427)
Q Consensus 323 ------g~~G~~~VEflvd~dG~~yfIEINpRl~ge~ 353 (1427)
|+.|++.+|.++|. ++++.|+.+|+.++.
T Consensus 140 k~l~~pG~iGPFcLq~~~d~--~~~vfevS~RI~gGt 174 (213)
T d2pbza2 140 RELEPPGVIGPFALHFAYDG--SFKAIGIASRIDGGS 174 (213)
T ss_dssp HHHSTTCCCSEEEEEEECSS--SCEEEEEESSBCSGG
T ss_pred HHhcCCCccccceEEEEEcC--CEEEEEEeeeecCCC
Confidence 88899999999864 599999999999863
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.74 E-value=3.6e-05 Score=83.55 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=78.8
Q ss_pred CHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHHhcCC-cEEEeecC--CC-C--------CcCeEEecCHHHHHHHHH
Q psy15244 171 DKVLARDAALKADVPIIPGTTEPVTDVDKVKEFCDEVEF-PVILKAAF--GG-G--------GRGMRMVANKDAIEENFK 238 (1427)
Q Consensus 171 DK~~~r~~a~~aGVpvp~~~~~~v~s~eea~~~a~~iGy-PvVVKP~~--Gg-G--------GrGV~iV~s~eeL~~a~~ 238 (1427)
+-+.+|++|+++|||+|++. .++|.+|+.++++++|| |+|+|+.- |+ | .-||+.+.|.+|+.++++
T Consensus 5 ~E~eaK~lL~~yGIpvp~~~--~a~s~~ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee~~~~a~ 82 (246)
T d1eucb2 5 QEYQSKKLMSDNGVKVQRFF--VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAK 82 (246)
T ss_dssp CHHHHHHHHHTTTCCCCCEE--EESSHHHHHHHHHHHTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCCee--EECCHHHHHHHHHHhCCCeEEEEEeeccccccccccccCCcceEEEecChhHHHHHhh
Confidence 46789999999999999987 78999999999999996 89999842 11 1 137888999999998876
Q ss_pred HHHHHHHHc--cC-----CCcEEEEeeccCCceEEEEEEeccc
Q psy15244 239 RAQSEALAS--FG-----KDDMLVEKYIDRPRHIEVQILGDKY 274 (1427)
Q Consensus 239 ~a~~ea~~~--fg-----~~~vlVEeyIeggreieVqvl~Dg~ 274 (1427)
......... .+ -..+++|+.++.++|+-+.+..|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~~ 125 (246)
T d1eucb2 83 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS 125 (246)
T ss_dssp TTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEGG
T ss_pred hhhcchhhhhhccccccccccceehhcccccceeeeeeeeccc
Confidence 543211100 00 2468999999999999999998754
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=97.44 E-value=0.00012 Score=64.76 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=54.5
Q ss_pred eeccCCCCCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCe
Q psy15244 1287 IFLNGPNIGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPG 1366 (1427)
Q Consensus 1287 v~v~~~~~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G 1366 (1427)
-.+.++|.|..++|.++.|+.+ .. |..-..+|-+-. ...|.||..|
T Consensus 9 ~~v~ap~~G~v~~~~V~~Gd~V-----------~~-G~~l~~vE~~K~----------------------~~~i~ap~~G 54 (77)
T d1dcza_ 9 GEIPAPLAGTVSKILVKEGDTV-----------KA-GQTVLVLEAMKM----------------------ETEINAPTDG 54 (77)
T ss_dssp SEEEBSSSCEEEEECCCTTCEE-----------CT-TSEEEEEEETTE----------------------EEEEECSSSE
T ss_pred CEEECCCCcEEEEEEcCCCCEE-----------eC-CCeEEEEEccCc----------------------cEEEEeCCCE
Confidence 3678899999999999999997 22 444444443321 2469999999
Q ss_pred EEEEEEecCCCEEecCCEEEEE
Q psy15244 1367 NIIEVKVKVGQQVKKNDVLIVM 1388 (1427)
Q Consensus 1367 ~v~~v~V~~Gd~V~~G~~l~~i 1388 (1427)
+|.+++|++||.|+.||+|+.|
T Consensus 55 ~V~~i~v~~G~~V~~G~~L~~i 76 (77)
T d1dcza_ 55 KVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp EEEEECCCTTCBCCBTSEEEEE
T ss_pred EEEEEeeCCCCEECCCCEEEEe
Confidence 9999999999999999999987
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.001 Score=58.96 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.8
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
...|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 48 ~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 48 MNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred cEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 357999999999999999999999999999987
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.74 E-value=0.0011 Score=58.58 Aligned_cols=63 Identities=27% Similarity=0.357 Sum_probs=49.1
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|+..+|.++.|+.+ .. |..-+.++-+. ....|.||..|+|.+++|
T Consensus 12 ~g~i~~~~v~~Gd~V-----------~~-gd~l~~iE~~K----------------------~~~~i~a~~~G~v~~i~v 57 (79)
T d1iyua_ 12 DGEVIELLVKTGDLI-----------EV-EQGLVVLESAK----------------------ASMEVPSPKAGVVKSVSV 57 (79)
T ss_dssp EEEEEEECCCTTCBC-----------CS-SSEEEEEECSS----------------------CEEEEECSSSSEEEEESC
T ss_pred CEEEEEEEecCCCEE-----------ec-CceEEEEEecC----------------------cEEEEEeccccEEEEEee
Confidence 578889999999986 22 44444444221 234689999999999999
Q ss_pred cCCCEEecCCEEEEEEc
Q psy15244 1374 KVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~iea 1390 (1427)
++||.|+.||+|+.||.
T Consensus 58 ~~G~~V~~G~~l~~ie~ 74 (79)
T d1iyua_ 58 KLGDKLKEGDAIIELEP 74 (79)
T ss_dssp CTTCEEETTSEEEEEEC
T ss_pred CCCCEECCCCEEEEEec
Confidence 99999999999999985
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=96.29 E-value=0.0041 Score=56.91 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCHH---------HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHH
Q psy15244 56 TMEKILIANRSEV---------AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIA 126 (1427)
Q Consensus 56 ~~kkVLIagrGei---------a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia 126 (1427)
|.+||+|+.+|.. |..+.+++++.|++++.++...+... ..
T Consensus 1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~~------------------------------~~ 50 (96)
T d1iowa1 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------------------------------QL 50 (96)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGG------------------------------GT
T ss_pred CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccccch------------------------------hh
Confidence 5678999876643 34588999999999988765443110 01
Q ss_pred HhcCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHHhCC
Q psy15244 127 KNNNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKTLGD 171 (1427)
Q Consensus 127 ~~~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~~~D 171 (1427)
+..++|.|++. +|...|+..++..|+..||||.|+++.+..++-|
T Consensus 51 ~~~~~d~vF~~lHG~~GEdG~iQ~~le~l~IPytGs~~~asal~~D 96 (96)
T d1iowa1 51 KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD 96 (96)
T ss_dssp TTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHC
T ss_pred hccCceeEEEeccCcchhccHHHHHHHHcCCCccCCCHHHHHHhcC
Confidence 23357888887 7878899999999999999999999999887654
|
| >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.12 E-value=0.00064 Score=72.15 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=56.2
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEEcCC-------------------------------------------
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVMK------------------------------------------- 1392 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieamK------------------------------------------- 1392 (1427)
+...|.|+..|.|.+++|++||.|++||+|+.|+...
T Consensus 14 ~~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 93 (237)
T d1vf7a_ 14 RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAY 93 (237)
T ss_dssp CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred EEEEEEeecCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhc
Confidence 3457999999999999999999999999999995430
Q ss_pred --------------ceeeeecCCCeEEEEEEecCCCeeCCCCE
Q psy15244 1393 --------------TETLIHASADGVVKEIFVEVGGQVAQNDL 1421 (1427)
Q Consensus 1393 --------------me~~i~Ap~~G~V~~i~v~~G~~V~~g~~ 1421 (1427)
-.+.|.||++|+|.++.+.+|+.+..+..
T Consensus 94 ~~a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~ 136 (237)
T d1vf7a_ 94 LQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQA 136 (237)
T ss_dssp HHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCS
T ss_pred chhHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCcc
Confidence 12349999999999999999999988764
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=96.09 E-value=0.003 Score=55.69 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=47.6
Q ss_pred CCcceeeeeecCCcceEEEeecccccccCCceEEEEEECCEEeEechhhhhhhhccccCCCCCCCceecCCCeEEEEEEe
Q psy15244 1294 IGEEFSCEFKTGDTAYVTTLSISEHLNDHGERTVFFLYNGQLRSLDKNKAKKLKLRSKADSDTAGEIGAPMPGNIIEVKV 1373 (1427)
Q Consensus 1294 ~g~~~~~~v~~Gd~~~~~~~~i~~~~~~~g~r~v~~elnG~~~~vd~~~~~~~~~~~~a~~~~~~~V~APm~G~v~~v~V 1373 (1427)
.|...+|.++.|+.+ .. |..-+.++-+ .....|.||..|+|.+++|
T Consensus 15 eg~i~~w~v~~Gd~V-----------~~-gd~l~~vEt~----------------------K~~~ei~a~~~G~v~~i~v 60 (79)
T d1ghja_ 15 DGTVATWHKKPGEAV-----------KR-DELIVDIETD----------------------KVVMEVLAEADGVIAEIVK 60 (79)
T ss_dssp CEEECCCSSCTTSEE-----------CS-SCEEEEEECS----------------------SCEEEEECSSCEEEEEESS
T ss_pred EEEEEEEEcCCCCEE-----------ee-CccEEEEEcC----------------------ceEEEEEeceeEEEEEEEc
Confidence 477888999999987 22 3333333311 1235799999999999999
Q ss_pred cCCCEEecCCEEEEEEc
Q psy15244 1374 KVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1374 ~~Gd~V~~G~~l~~iea 1390 (1427)
++||.|+.|++|+.|+.
T Consensus 61 ~~Gd~v~~G~~l~~i~~ 77 (79)
T d1ghja_ 61 NEGDTVLSGELLGKLTE 77 (79)
T ss_dssp CTTCEECTTCEEEEECC
T ss_pred CCCCEECCCCEEEEEeC
Confidence 99999999999999874
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=96.03 E-value=0.7 Score=48.89 Aligned_cols=214 Identities=15% Similarity=0.138 Sum_probs=145.9
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhcccc--C--h-HHHHHHHHHhCCCCceeeeecccccccccCCCcc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKE--C--P-WERLAELRELIPNIPFQMILRGNSLVGYSNYSPA 753 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e--~--p-~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~n 753 (1427)
+.+++++-+..... .|.+.+|.. +| ++.+ + . -+.++.+++..++.|+-.-+|...==|.....++
T Consensus 26 ~~~~~~~~~~~~~~--~~aD~vE~R----lD----~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~ 95 (252)
T d1gqna_ 26 DINSVKAEALAYRE--ATFDILEWR----VD----HFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQ 95 (252)
T ss_dssp SHHHHHHHHHHHTT--SCCSEEEEE----GG----GCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHH
T ss_pred CHHHHHHHHHHHhh--cCCCEEEEE----Ec----cccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHH
Confidence 45666666666655 699999986 34 3322 1 1 3446678888888998888887644444445566
Q ss_pred hHHHHHHHHHhcC-CCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHC
Q psy15244 754 EVGAFCRLASQAG-IDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVES 832 (1427)
Q Consensus 754 vv~~~v~~a~~~G-id~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~ 832 (1427)
...+.++.+.++| +|.+-|=.... -+.+...++.++..|. .+ -++|- ||.. -.+.+.+.++.+++.+.
T Consensus 96 ~~~~ll~~~~~~~~~d~iDiEl~~~-~~~~~~li~~a~~~~~---~v--I~S~H-df~~----TP~~~~l~~~~~~m~~~ 164 (252)
T d1gqna_ 96 HYLTLNRAAIDSGLVDMIDLELFTG-DADVKATVDYAHAHNV---YV--VMSNH-DFHQ----TPSAEEMVSRLRKMQAL 164 (252)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEGGGC-HHHHHHHHHHHHHTTC---EE--EEEEE-ESSC----CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCceEecccccc-HHHHHHHHHHhhcCCC---eE--EEEec-CCCC----CCCHHHHHHHHHHHHHh
Confidence 6778889999998 78877754443 2345666777787776 33 23443 4421 25678999999999999
Q ss_pred CCCEEEEccccCcCCHHHHHHHHHH---HHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcH
Q psy15244 833 GAQVLCLKDMAGLLKPTAAKLLIGS---FREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAM 909 (1427)
Q Consensus 833 Gad~i~i~Dt~G~l~P~~~~~lv~~---lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~l 909 (1427)
|||++-|+=|+ -.+.++..+..+ +++..++.|+-.-+=-. +|..+=+.+-..|-.+.-+++.. .--+||+++
T Consensus 165 gaDivKia~~a--~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~--~G~~SRi~~~~~GS~~tya~~~~-~sAPGQ~~~ 239 (252)
T d1gqna_ 165 GADIPKIAVMP--QSKHDVLTLLTATLEMQQHYADRPVITMSMAK--EGVISRLAGEVFGSAATFGAVKQ-ASAPGQIAV 239 (252)
T ss_dssp TCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTCSSCCEEEECTT--TTHHHHHCHHHHTCCEEECBSSS-CCSTTCCBH
T ss_pred CCCeEEEEecC--CCHHHHHHHHHHHHHHHHhCCCCCEEEEecCC--cchhHHHHHHHhCCceEeccCCC-CCCCCCCCH
Confidence 99999998553 356677776654 45555678865543333 34566677777899998888854 667999999
Q ss_pred HHHHHHHHh
Q psy15244 910 GTIVSCLEN 918 (1427)
Q Consensus 910 E~vv~~L~~ 918 (1427)
+++-..|+-
T Consensus 240 ~~l~~~l~~ 248 (252)
T d1gqna_ 240 NDLRSVLMI 248 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877763
|
| >d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Thermus thermophilus [TaxId: 274]
Probab=95.65 E-value=0.0057 Score=58.87 Aligned_cols=47 Identities=28% Similarity=0.454 Sum_probs=41.6
Q ss_pred CCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1364 MPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1364 m~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
.-|.|+.+.. +.|+.|++|+++++||+-|.-.+|.||++|+|.+++-
T Consensus 33 ~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~ 80 (127)
T d1onla_ 33 ALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL 80 (127)
T ss_dssp HHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred hccccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence 4466777765 8999999999999999999999999999999998864
|
| >d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Pea (Pisum sativum) [TaxId: 3888]
Probab=95.57 E-value=0.0064 Score=58.78 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=41.1
Q ss_pred CCeEEEEEEe-cCCCEEecCCEEEEEEcCCceeeeecCCCeEEEEEEe
Q psy15244 1364 MPGNIIEVKV-KVGQQVKKNDVLIVMSVMKTETLIHASADGVVKEIFV 1410 (1427)
Q Consensus 1364 m~G~v~~v~V-~~Gd~V~~G~~l~~ieamKme~~i~Ap~~G~V~~i~v 1410 (1427)
.-|.|+.+.. +.|+.|++|+++++||+-|...+|.||++|+|.+++-
T Consensus 34 ~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~ 81 (131)
T d1hpca_ 34 HLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT 81 (131)
T ss_dssp HHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred hhhhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeehh
Confidence 3456776665 7999999999999999999999999999999998864
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.0081 Score=53.84 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=31.6
Q ss_pred CceecCCCeEEEEEEecCCCEEecCCEEEEEEcC
Q psy15244 1358 GEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSVM 1391 (1427)
Q Consensus 1358 ~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ieam 1391 (1427)
..|.||..|+|.+++|++||.|+.|++|+.|+.-
T Consensus 48 ~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~ 81 (87)
T d1k8ma_ 48 VTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (87)
T ss_dssp EECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred EEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 4689999999999999999999999999999864
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.011 Score=51.69 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=40.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcC
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVG 107 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~ 107 (1427)
||+|.|+|+|..|+.++.+++++|+++++++.+++ ++....++..+...
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~--~pa~~~a~dvIT~e 49 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE--PAAVPFQQSVITAE 49 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC--GGGSCGGGSEEEES
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC--CcccccccceEEEe
Confidence 58999999999999999999999999998877665 55566677776643
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0065 Score=53.66 Aligned_cols=34 Identities=35% Similarity=0.669 Sum_probs=31.9
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.+++|++||.|+.||+|+.||+
T Consensus 43 ~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~ 76 (80)
T d1qjoa_ 43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred cceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence 5679999999999999999999999999999985
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.16 E-value=0.0018 Score=57.31 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||.+|+|.+++|++||.|+.||+|+.||+
T Consensus 44 ~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~ 77 (80)
T d1laba_ 44 VVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA 77 (80)
T ss_dssp EEEECCSSCEECCCBSSCSSSEECSSSCSBCBBC
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 4579999999999999999999999999999885
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.69 Score=50.02 Aligned_cols=214 Identities=9% Similarity=0.008 Sum_probs=133.7
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchH
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv 755 (1427)
..++.+++++.++.+.+ .|+..+-+.+|... ..+.+.+.+.++.+..++..+...++. .+- -
T Consensus 71 ~~~~~e~i~~~~~~~~~--~G~~~~~~~~g~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~l--~ 132 (312)
T d1r30a_ 71 RLMEVEQVLESARKAKA--AGSTRFCMGAAWKN------PHERDMPYLEQMVQGVKAMGLEACMTL--------GTL--S 132 (312)
T ss_dssp CCCCHHHHHHHHHHHHH--TTCSEEEEEECCSS------CCTTTHHHHHHHHHHHHHTTSEEEEEC--------SSC--C
T ss_pred cccchHHHHHHHHHHHH--cCCEEEEEccCCCC------CchhhHHHHHHHHHhcccccceeeecc--------ccc--h
Confidence 34788999999999988 69888776554221 122334444444443333332222221 111 2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh-----------HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS-----------VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd-----------~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
.+.+++.+++|++.+.+..-.++ .+....+++.++++|+ .+..++.+. -+ -+.+..++
T Consensus 133 ~e~l~~lk~aG~~~i~~~iEs~~~~~~~~~~~~~~~~~~~~~~~a~~~Gi---~~~~~~i~G----~~----et~~d~~~ 201 (312)
T d1r30a_ 133 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGI---KVCSGGIVG----LG----ETVKDRAG 201 (312)
T ss_dssp HHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHC---EEECCEEEC----SS----CCHHHHHH
T ss_pred HHHHHHhhcccceeEecccchhhhhhccCCCCCCHHHHHHHHHHHHHhcc---ceecceEec----Cc----CcHHHHHH
Confidence 34477888999998866554442 2344678899999999 777766654 23 45566667
Q ss_pred HHHHHHHCCCC--EEE------Eccc----cCcCCHHHHHHHHHHHHHHcCCceEEEee-cCCcchHHHHHHHHHHhcCC
Q psy15244 825 LAKQLVESGAQ--VLC------LKDM----AGLLKPTAAKLLIGSFREKYPNILIHVHT-HDMAGTGVATTLACVKAGAD 891 (1427)
Q Consensus 825 ~a~~l~~~Gad--~i~------i~Dt----~G~l~P~~~~~lv~~lr~~~p~ipi~~H~-Hnd~GlA~An~laAi~AGad 891 (1427)
....+.+++.+ .+. ...| .....|.+...++...|=.+|+..|++=+ -.+.|--.+ ..|+.+||+
T Consensus 202 ~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~~~~--~~~L~~Gan 279 (312)
T d1r30a_ 202 LLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQ--AMCFMAGAN 279 (312)
T ss_dssp HHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHH--HHHHHHTCC
T ss_pred HHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHHHHHHHHHHHHhCCCcceEEEechhhcCHHHH--HHHHhcCCc
Confidence 77777776553 332 1333 22346688888888888888998887755 344454333 457999999
Q ss_pred EEEeccccCC-CCCCCCcHHHHHHHHHhCCCCC
Q psy15244 892 IVDVAADSMS-GICSQPAMGTIVSCLENTDKRC 923 (1427)
Q Consensus 892 ~VD~av~GmG-~~tgn~~lE~vv~~L~~~g~~t 923 (1427)
.+ +.|-. -.+++++.++++.+++..|+.+
T Consensus 280 ~~---~~~~~~~t~~~~~~~~~~~~i~~~G~~P 309 (312)
T d1r30a_ 280 SI---FYGCKLLTTPNPEEDKDLQLFRKLGLNP 309 (312)
T ss_dssp EE---ECSSBSSSSBCCCHHHHHHHHHHTTCCS
T ss_pred EE---EecCccccCCCCCHHHHHHHHHHcCCCc
Confidence 44 22100 1356688999999999888765
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=94.91 E-value=0.0044 Score=54.92 Aligned_cols=34 Identities=29% Similarity=0.565 Sum_probs=31.2
Q ss_pred CCceecCCCeEEEEEEecCCCEEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.+++|++||.|+.||+|+.+|+
T Consensus 44 ~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~ 77 (81)
T d1gjxa_ 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3568899999999999999999999999999975
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.83 E-value=0.071 Score=54.65 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 56 TMEKILIAN-RSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 56 ~~kkVLIag-rGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
.||||||+| .|.++..+++.+-+.|++++++..++..........-+.+. .++.|.+.+.+..+ ++|+|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~--------gD~~d~~~l~~al~--~~d~v 71 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVV--------GDVLQAADVDKTVA--GQDAV 71 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEE--------SCTTSHHHHHHHHT--TCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccccccccc--------ccccchhhHHHHhc--CCCEE
Confidence 488999999 69999999999999999999887655432221111112222 24567788777765 58988
Q ss_pred EeCCCc
Q psy15244 135 HPGYGF 140 (1427)
Q Consensus 135 ~pg~gf 140 (1427)
+-..|+
T Consensus 72 i~~~g~ 77 (205)
T d1hdoa_ 72 IVLLGT 77 (205)
T ss_dssp EECCCC
T ss_pred EEEecc
Confidence 877664
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.68 E-value=0.18 Score=53.48 Aligned_cols=209 Identities=16% Similarity=0.120 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc--------h-hhhhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV--------S-HTCLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat--------f-d~~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-+++++.|++ |++.||+|-|.+ . +++.|-|.. +-|+.++++|+. +++++-.+
T Consensus 17 ~~~~s~~~l~~l~~---g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~-~~~pivlm------ 86 (248)
T d1geqa_ 17 DKQSTLNFLLALDE---YAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH-SSTPIVLM------ 86 (248)
T ss_dssp CHHHHHHHHHHHGG---GBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT-CCCCEEEE------
T ss_pred CHHHHHHHHHHHHc---CCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhc-CCCcEEEE------
Confidence 34667788889976 999999985433 2 233444432 346777888764 56775544
Q ss_pred ccccCCCcc-hHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHH
Q psy15244 745 VGYSNYSPA-EVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYE 823 (1427)
Q Consensus 745 vgy~~~~~n-vv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~ 823 (1427)
+|-|-.-. =.++|++.++++|+|.+-+.|-- .+......+.+++.|. . .|++. +| -.+.+.+.
T Consensus 87 -~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP--~eE~~~~~~~~~~~gl---~---~I~lv----aP---tt~~~ri~ 150 (248)
T d1geqa_ 87 -TYYNPIYRAGVRNFLAEAKASGVDGILVVDLP--VFHAKEFTEIAREEGI---K---TVFLA----AP---NTPDERLK 150 (248)
T ss_dssp -ECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC--GGGHHHHHHHHHHHTC---E---EEEEE----CT---TCCHHHHH
T ss_pred -eccccccccCHHHHhhhhcccCeeEEeccCCc--HHHHHHHHhhccccCc---c---eEEEe----cc---cchhHHHH
Confidence 23222111 15789999999999999998853 4566777788889998 2 33443 55 24444444
Q ss_pred HHHHHHHHCCCCEEEEccccCc-----CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH---HHHHHHhcCCEEEe
Q psy15244 824 DLAKQLVESGAQVLCLKDMAGL-----LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT---TLACVKAGADIVDV 895 (1427)
Q Consensus 824 ~~a~~l~~~Gad~i~i~Dt~G~-----l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An---~laAi~AGad~VD~ 895 (1427)
.+++. .-.-|++.=..|. ..|..+.++++.+|+.. ++|+.+ |.|+.+ +..++.+|||.|=+
T Consensus 151 ~i~~~----s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t-~~Pv~v------GFGI~~~e~v~~~~~~~ADGvIV 219 (248)
T d1geqa_ 151 VIDDM----TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAV------GFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp HHHHH----CSSEEEEECCC-------CCCHHHHHHHHHHHHHC-SSCEEE------ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHhc----CCCeEEEEecccccccchhhhhhHHHHHHHHhhhc-ccceee------ecccCCHHHHHHHHhcCCCEEEE
Confidence 44433 2334444334332 45678999999999986 899876 555532 34567789987633
Q ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHHhCC
Q psy15244 896 AADSMSGICSQPAMGTIVSCLENTDKRCGIDLHDVCDYSSYWRKVREL 943 (1427)
Q Consensus 896 av~GmG~~tgn~~lE~vv~~L~~~g~~tgidl~~L~~l~~~v~~~~g~ 943 (1427)
. ..++..+.+.+.+ ....+.+++++++|+
T Consensus 220 G-------------Saiv~~i~~~~~~------~~~~l~~~~~~l~G~ 248 (248)
T d1geqa_ 220 G-------------SALVKIIGEKGRE------ATEFLKKKVEELLGI 248 (248)
T ss_dssp C-------------HHHHHHHHHHGGG------CHHHHHHHHHHHHTC
T ss_pred C-------------HHHHHHHHHhCch------HHHHHHHHHHHHhCc
Confidence 2 1366666543221 233456667666653
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=94.48 E-value=0.062 Score=57.89 Aligned_cols=183 Identities=21% Similarity=0.184 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhhcCCccEEeccCCCc--------hhhh-hhcccc-----ChHHHHHHHHHhCCCCceeeeecccccc
Q psy15244 680 TYDLKKVSPFVANRFNNLYSLEMWGGAV--------SHTC-LKFLKE-----CPWERLAELRELIPNIPFQMILRGNSLV 745 (1427)
Q Consensus 680 t~d~l~ia~~l~~~~~G~~~iE~~ggat--------fd~~-~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~v 745 (1427)
.+.-++++..|.+ .|++.||+|-|.. ...+ .|-|.. +-++-++.+|+..+++++-++.=-....
T Consensus 30 ~~~~~~~~~~l~~--~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~ 107 (267)
T d1qopa_ 30 IEQSLKIIDTLID--AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF 107 (267)
T ss_dssp HHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchh
Confidence 5778899999988 7999999985432 2221 222222 2367778888888888876653211111
Q ss_pred cccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHH
Q psy15244 746 GYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDL 825 (1427)
Q Consensus 746 gy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~ 825 (1427)
.| =+++|++.|.++|+|.+-|.|-. ++......+.+++.|. . .|.+. +| ..+.+.+..+
T Consensus 108 ~~------G~~~f~~~~~~~Gv~GliipDlP--~ee~~~~~~~~~~~~l---~---~I~lv----aP---tt~~~Ri~~i 166 (267)
T d1qopa_ 108 NN------GIDAFYARCEQVGVDSVLVADVP--VEESAPFRQAALRHNI---A---PIFIC----PP---NADDDLLRQV 166 (267)
T ss_dssp TT------CHHHHHHHHHHHTCCEEEETTCC--GGGCHHHHHHHHHTTC---E---EECEE----CT---TCCHHHHHHH
T ss_pred hc------CchHHHHHHHhcCCCceeccchh--hhhhHHHHHhhhccCc---e---EEEEe----cc---cccHHHHHHH
Confidence 11 25789999999999999998843 3444566778888998 2 23333 55 3556666655
Q ss_pred HHHHHHCC-CCEEEEccccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHH--H-HHHHHhcCCEEE
Q psy15244 826 AKQLVESG-AQVLCLKDMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVAT--T-LACVKAGADIVD 894 (1427)
Q Consensus 826 a~~l~~~G-ad~i~i~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An--~-laAi~AGad~VD 894 (1427)
++... | +-.+...=++|. ..+..+.++++.+|+.. ++||.+ |.|+.+ - ..++++|||.|=
T Consensus 167 ~~~a~--gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~v------GFGI~~~e~v~~~~~~~ADGvI 232 (267)
T d1qopa_ 167 ASYGR--GYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQ------GFGISSPEQVSAAVRAGAAGAI 232 (267)
T ss_dssp HHHCC--SCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEE------ESSCCSHHHHHHHHHTTCSEEE
T ss_pred HhhCc--hhhhhhcccccCCcccccchhHHHHHHHHhhhc-cCCcee------ecccCCHHHHHHHHhcCCCEEE
Confidence 55432 2 223333333443 33577899999999887 899865 444433 3 346788998763
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.0052 Score=54.28 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=31.5
Q ss_pred CCCceecCCCeEEEEEEecCCCEEecCCEEEEEE
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQVKKNDVLIVMS 1389 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~V~~G~~l~~ie 1389 (1427)
....|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 44 ~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~ 77 (80)
T d1pmra_ 44 VVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp CCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred eEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 3567999999999999999999999999999987
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.14 Score=45.76 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEe
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHP 136 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~p 136 (1427)
-|||+|+|-|..+..+++.+.+.|.++.+.+...+............+..+ +.+.+.+ .++|.|+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~d~vi~ 70 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTG--------SLNDEWL------MAADLIVA 70 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEES--------BCCHHHH------HHCSEEEE
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeec--------ccchhhh------ccCCEEEE
Confidence 468999999999999999999999999988775543222111112222222 1222221 24799999
Q ss_pred CCCcccccHHHHHHHHHCCCceeC
Q psy15244 137 GYGFLSEREDFAKAVIGAGLEFIG 160 (1427)
Q Consensus 137 g~gflsE~~~~a~~~e~~Gi~fiG 160 (1427)
..|.-..++. .+.+.+.|++++|
T Consensus 71 SPGi~~~~~~-~~~a~~~gi~iiG 93 (93)
T d2jfga1 71 SPGIALAHPS-LSAAADAGIEIVG 93 (93)
T ss_dssp CTTSCTTSHH-HHHHHHTTCEEEC
T ss_pred CCCCCCCCHH-HHHHHHcCCCeEC
Confidence 9987555554 4555678999887
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.79 E-value=0.33 Score=51.50 Aligned_cols=218 Identities=12% Similarity=-0.019 Sum_probs=117.2
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHH
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVG 756 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~ 756 (1427)
+++.++.++.+ .+ .|++.||+|+.-. ...+......+.++++.+. -+..+.++......-.+.....+-.+
T Consensus 17 ~l~lee~l~~a---~~--~G~dgiEl~~~~~---~~~~~~~~~~~~~k~~l~~-~gl~i~~l~~~~~~~~~~~~~~~~~~ 87 (271)
T d2q02a1 17 GLSIEAFFRLV---KR--LEFNKVELRNDMP---SGSVTDDLNYNQVRNLAEK-YGLEIVTINAVYPFNQLTEEVVKKTE 87 (271)
T ss_dssp TSCHHHHHHHH---HH--TTCCEEEEETTST---TSSTTTTCCHHHHHHHHHH-TTCEEEEEEEETTTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHH---HH--hCCCEEEEecCcc---cccccccCCHHHHHHHHHH-cCCcEEEeecccccCCCCHHHHHHHH
Confidence 57788887776 44 5999999985211 1112233344556554443 23444444322211111111112246
Q ss_pred HHHHHHHhcCCCEEEEeccCC----h----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLN----S----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQ 828 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~n----d----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~ 828 (1427)
+.++.|.+.|.+.++++-... . ++.++...+.+++.|. .. .+..- .-+...-.+.+...++++.
T Consensus 88 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l--~lE~~---~~~~~~~~~~~~~~~li~~ 159 (271)
T d2q02a1 88 GLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDI---QG--LVEPL---GFRVSSLRSAVWAQQLIRE 159 (271)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTC---EE--EECCC---CSTTCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEecCCCCccchHHHHHHHHHHHHHHhccCCe---EE--EEeec---CCcCcccCCHHHHHHHHHH
Confidence 678888899999999865422 1 4567777888888887 22 22211 1111223567777777766
Q ss_pred HHHCCCCEEEEccccCcC-CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCC
Q psy15244 829 LVESGAQVLCLKDMAGLL-KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQP 907 (1427)
Q Consensus 829 l~~~Gad~i~i~Dt~G~l-~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~ 907 (1427)
+. ..+ .+++ |+.-.. .+....+. ++...++--.|+|.||..+..... +..|. -..+..+.|+.
T Consensus 160 ~~-~~~-g~~~-D~~H~~~~g~~~~~~---~~~l~~~~i~~vH~~d~~~~~~~~---------~~~~~-~r~~~~G~G~i 223 (271)
T d2q02a1 160 AG-SPF-KVLL-DTFHHHLYEEAEKEF---ASRIDISAIGLVHLSGVEDTRPTE---------ALADE-QRIMLSEKDVM 223 (271)
T ss_dssp HT-CCC-EEEE-EHHHHHHCTTHHHHH---HHHCCGGGEEEEEECBCCCCSCGG---------GCCGG-GCBCCCTTCSS
T ss_pred hC-Ccc-ceec-cchhHHHcCCChHHH---HHHhCcCcEEEEEEEeCCCCCccc---------ccccc-ceeccCCCccc
Confidence 53 233 3444 865321 22222333 222223445688998865432110 11111 11234467889
Q ss_pred cHHHHHHHHHhCCCCCCCCh
Q psy15244 908 AMGTIVSCLENTDKRCGIDL 927 (1427)
Q Consensus 908 ~lE~vv~~L~~~g~~tgidl 927 (1427)
+...++.+|+..|++--+.+
T Consensus 224 d~~~i~~~L~~~GY~G~~s~ 243 (271)
T d2q02a1 224 QNYQQVQRLENMGYRGIYAF 243 (271)
T ss_dssp CHHHHHHHHHHTTCCSCEEE
T ss_pred CHHHHHHHHHHcCCCccEEE
Confidence 99999999999988754444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.41 E-value=0.06 Score=51.43 Aligned_cols=90 Identities=18% Similarity=0.091 Sum_probs=55.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||+|+|.|.++..+++.+.+.|+++++++.+++.........+..+..+ +..+ ..+++-+.-..+|+++..
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~G-------d~~~-~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVING-------DCTK-IKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEES-------CTTS-HHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccC-------cccc-hhhhhhcChhhhhhhccc
Confidence 38999999999999999999999999999887764322211113233333 1233 344455555568888876
Q ss_pred CCcccccHHHHHHHHHCC
Q psy15244 138 YGFLSEREDFAKAVIGAG 155 (1427)
Q Consensus 138 ~gflsE~~~~a~~~e~~G 155 (1427)
.+....|...+..+...|
T Consensus 73 t~~d~~N~~~~~~~k~~~ 90 (132)
T d1lssa_ 73 TGKEEVNLMSSLLAKSYG 90 (132)
T ss_dssp CSCHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 554333333333444443
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.07 Score=48.97 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=30.3
Q ss_pred CCceecCCCeEEEEEEecCCC-EEecCCEEEEEEc
Q psy15244 1357 AGEIGAPMPGNIIEVKVKVGQ-QVKKNDVLIVMSV 1390 (1427)
Q Consensus 1357 ~~~V~APm~G~v~~v~V~~Gd-~V~~G~~l~~iea 1390 (1427)
...|.||..|+|.++++++|| .|+.|++|++|..
T Consensus 48 ~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~ 82 (102)
T d1y8ob1 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (102)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred EEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEec
Confidence 357999999999999999998 5999999999954
|
| >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Duplicated hybrid motif family: Glucose permease-like domain: Glucose permease IIa domain, IIa-glc species: Bacillus subtilis [TaxId: 1423]
Probab=92.60 E-value=0.04 Score=54.61 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=40.7
Q ss_pred CCCeEEEEEEecCCCEEecCCEEEEEEc-------CCceeeeecCCCeEEEEEEecCCCeeCCC-CEEEEEe
Q psy15244 1363 PMPGNIIEVKVKVGQQVKKNDVLIVMSV-------MKTETLIHASADGVVKEIFVEVGGQVAQN-DLVVVLD 1426 (1427)
Q Consensus 1363 Pm~G~v~~v~V~~Gd~V~~G~~l~~iea-------mKme~~i~Ap~~G~V~~i~v~~G~~V~~g-~~L~~i~ 1426 (1427)
-|.|.-.+++|++||+|++||+|+...- -.+.+.|.-.-......+.+.....|..| +.|+.|+
T Consensus 87 ~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~~~v~~g~~~i~~v~ 158 (158)
T d1gpra_ 87 SLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNREQEDIVKIE 158 (158)
T ss_dssp GGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCEEEEESSCCTTCCEEECCCSEECTTCBCCEEEC
T ss_pred ccCCcceEEEEcCCCEEcCCCEEEEeCHHHHHhhCCCCceEEEEEeccccceEEEecCCcEEcCCceEEEEC
Confidence 3455556889999999999999998743 22444444433333344555555555555 6787764
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=92.51 E-value=0.97 Score=47.61 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=111.7
Q ss_pred CCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccc--cCCC
Q psy15244 674 LATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGY--SNYS 751 (1427)
Q Consensus 674 ~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy--~~~~ 751 (1427)
+....+.+|+.+.++.-.+ -|+.++-+... .+...++.+.++.+..- ..+|| ...+
T Consensus 44 L~p~~t~e~i~~lc~~A~~--~~~aaVcV~P~----------------~v~~a~~~L~gs~v~v~----tVigFP~G~~~ 101 (251)
T d1o0ya_ 44 LKPFATPDDIKKLCLEARE--NRFHGVCVNPC----------------YVKLAREELEGTDVKVV----TVVGFPLGANE 101 (251)
T ss_dssp CCTTCCHHHHHHHHHHHHH--HTCSEEEECGG----------------GHHHHHHHHTTSCCEEE----EEESTTTCCSC
T ss_pred CCCCCCHHHHHHHHHHHhh--cCceEEEECHH----------------HHHHHHHHhcCCCceEE----eeccCCCCCCc
Confidence 3445778889888887766 48888876521 23445555555443321 24555 3355
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHh--cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQV--TGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~--G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
-.....-++.|++.|.|.+-+....+.+ +.+..-+..+++. |. .+-+-+... ..+.+....
T Consensus 102 ~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~---~lKVIlEt~---------~L~~~e~~~ 169 (251)
T d1o0ya_ 102 TRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGK---VVKVIIETC---------YLDTEEKIA 169 (251)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTS---EEEEECCGG---------GCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhccc---ceeeeeccc---------ccCcHHHHH
Confidence 5666667899999999999998877643 4444445444443 44 554433222 467788889
Q ss_pred HHHHHHHCCCCEEEEccc--cCcCCHHHHHHHHHHHHHHcCCceE--EEeecCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 825 LAKQLVESGAQVLCLKDM--AGLLKPTAAKLLIGSFREKYPNILI--HVHTHDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~Dt--~G~l~P~~~~~lv~~lr~~~p~ipi--~~H~Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.++.+.++|||-|--+-- .|..+|+.+..+-..+.... ++.. ++++ ...+++-+++||+.|-+|
T Consensus 170 a~~ia~~aGadfvKTSTGf~~~gat~e~V~~m~~~~~~~~-giKasGGIrt-------~~~a~~~i~aGa~riGtS 237 (251)
T d1o0ya_ 170 ACVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIVGDEM-GVKASGGIRT-------FEDAVKMIMYGADRIGTS 237 (251)
T ss_dssp HHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHCTTS-EEEEESSCCS-------HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHhCcceeeccCCCCCCCcCHHHHHHHHHHhCCCc-eEeccCCcCC-------HHHHHHHHHHhhHHhCCC
Confidence 999999999996554432 23467777765544443332 2222 1222 456677899999998543
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.25 E-value=0.069 Score=47.77 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=55.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
.||||+|.|.---.+++++.+...++.+.-.++. . ..++ -. .+.+.+..++.+.++|.++.|
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~G---~-~~~~---~~-----------~~~~~~~~~~~~~~idlviIG 62 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAG---T-KRDG---TN-----------HPYEGEKTLKAIPEEDIVIPG 62 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT---G-GGTS---EE-----------CCCCTHHHHHTSCSSCEECCS
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCcc---c-cccc---ee-----------ccchhhHHHHHhccceeEEEC
Confidence 3899999996666799999998877554322221 1 1122 11 123456778999999999998
Q ss_pred CCc-ccccHHHHHHHHHCCCceeCCCHHHHHHh
Q psy15244 138 YGF-LSEREDFAKAVIGAGLEFIGPAPNVLKTL 169 (1427)
Q Consensus 138 ~gf-lsE~~~~a~~~e~~Gi~fiGps~eai~~~ 169 (1427)
.+. |.+ .+++.+ +..+||+.+++++-
T Consensus 63 PE~pL~~--Gi~D~~----~~vfGP~k~aA~lE 89 (90)
T d1vkza2 63 SEEFLVE--GVSNWR----SNVFGPVKEVARLE 89 (90)
T ss_dssp SGGGTCC-------C----TTBSSCCHHHHHHH
T ss_pred hHHHHHH--HHHHhC----CcccCcCHHHHhcc
Confidence 742 221 244433 45789999888753
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=91.99 E-value=2.1 Score=43.80 Aligned_cols=180 Identities=20% Similarity=0.258 Sum_probs=112.1
Q ss_pred CCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccC--CC
Q psy15244 674 LATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSN--YS 751 (1427)
Q Consensus 674 ~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~--~~ 751 (1427)
+....+.+|+.++++.-.+ .|+.++-++.. .+...++.+++..+..- ..+||-. .+
T Consensus 11 L~~~~T~~~i~~lc~~A~~--~~~~aVcV~P~----------------~v~~a~~~l~~s~v~v~----~VigFP~G~~~ 68 (211)
T d1ub3a_ 11 LKPTATLEEVAKAAEEALE--YGFYGLCIPPS----------------YVAWVRARYPHAPFRLV----TVVGFPLGYQE 68 (211)
T ss_dssp CCTTCCHHHHHHHHHHHHH--HTCSEEECCGG----------------GHHHHHHHCTTCSSEEE----EEESTTTCCSC
T ss_pred CCCCCCHHHHHHHHHHHHH--hCCeEEEECHH----------------HHHHHHHHccCCCCceE----EEEecccccCc
Confidence 3445778999999887776 58888876531 23445666766553321 2455532 34
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDL 825 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~ 825 (1427)
......-++.|.+.|.|.+-+....+.+ +.++.-+..+++. +. ..+-+-+... ..+.+.+.+.
T Consensus 69 ~~~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~--~~lKVIlEt~---------~L~~~ei~~a 137 (211)
T d1ub3a_ 69 KEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQ--AVLKVILETG---------YFSPEEIARL 137 (211)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTT--SEEEEECCGG---------GSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccC--CceEEEeccc---------cCCHHHHHHH
Confidence 4555666888999999999988876643 3444444444443 32 2333322221 4678889999
Q ss_pred HHHHHHCCCCEEEEccccCc----CCHHHHHHHHHHHHHHcCCceEEEeecCCcc--hHHHHHHHHHHhcCCEEEec
Q psy15244 826 AKQLVESGAQVLCLKDMAGL----LKPTAAKLLIGSFREKYPNILIHVHTHDMAG--TGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~Dt~G~----l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~G--lA~An~laAi~AGad~VD~a 896 (1427)
++.+.++|+|-|-- +.|. .+|+.++.+.+.++... .| +. .| --...+++-+++||+.+-+|
T Consensus 138 ~~~a~~aGadfiKT--STG~~~~gat~e~v~~m~~~~~~~~---~i--Ka---sGGIrt~~~a~~~l~aGa~riGtS 204 (211)
T d1ub3a_ 138 AEAAIRGGADFLKT--STGFGPRGASLEDVALLVRVAQGRA---QV--KA---AGGIRDRETALRMLKAGASRLGTS 204 (211)
T ss_dssp HHHHHHHTCSEEEC--CCSSSSCCCCHHHHHHHHHHHTTSS---EE--EE---ESSCCSHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHhccceEEe--cCCCCCCCCCHHHHHHHHHHhCCCc---eE--EC---cCCCCCHHHHHHHHHHhhhHhccC
Confidence 99999999996554 4453 67877776666554333 22 22 11 12445677889999998665
|
| >d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Probab=91.85 E-value=5.7 Score=41.10 Aligned_cols=199 Identities=11% Similarity=0.101 Sum_probs=132.5
Q ss_pred CCccEEeccCCCchhhhhhccccChHHH----HHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHh-cCCCE
Q psy15244 695 NNLYSLEMWGGAVSHTCLKFLKECPWER----LAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQ-AGIDI 769 (1427)
Q Consensus 695 ~G~~~iE~~ggatfd~~~rfl~e~p~er----l~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~-~Gid~ 769 (1427)
.+++.+|.+ +| ++.+-..+. +..+++...+.|+-.-+|...==|.....++...+.+..+++ .|+|.
T Consensus 27 ~~~D~vElR----lD----~l~~~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~ 98 (236)
T d1sfla_ 27 DAIDVLELR----ID----QFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDM 98 (236)
T ss_dssp TTCSEEEEE----CT----TSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHHGGGCTTCCE
T ss_pred cCCCEEEEE----ec----cccCCCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCHHHHHHHHHHHHHhcCCch
Confidence 589999986 23 333322233 334444445678888888765555555566666667766665 47899
Q ss_pred EEEeccC-ChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCH
Q psy15244 770 FRVFDPL-NSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKP 848 (1427)
Q Consensus 770 ~rif~~~-nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P 848 (1427)
+-|-... .++......++.++..|. .+- ++|- ||.. --+.+.+.++.+++.+.|||++-|+=|+ -.+
T Consensus 99 iDiE~~~~~~~~~~~~~~~~~~~~~~---~vI--~S~H-~f~~----TP~~~el~~~~~~~~~~gaDivKia~~~--~~~ 166 (236)
T d1sfla_ 99 IDIEWQADIDIEKHQRIITHLQQYNK---EVI--ISHH-NFES----TPPLDELQFIFFKMQKFNPEYVKLAVMP--HNK 166 (236)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTC---EEE--EEEE-ESSC----CCCHHHHHHHHHHHHTTCCSEEEEEECC--SSH
T ss_pred hhhhhcchhhHHHHHHHHHHhhcCCC---EEE--EEEc-CCCC----CCCHHHHHHHHHHHHHhCCCeEEEEEec--CCH
Confidence 9886554 367777788888988887 432 3333 3321 2456899999999999999999988443 467
Q ss_pred HHHHHHHHHH---HHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 849 TAAKLLIGSF---REKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 849 ~~~~~lv~~l---r~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
.++.+++..+ ++.. +.|+-.-+ .--+|..+=+.+-..|..+.=+++.. .--+||++++++-..|+
T Consensus 167 ~D~~~ll~~~~~~~~~~-~~pii~~~--MG~~G~~sRi~~~~~GS~~tya~~~~-~sAPGQ~~~~~lr~~l~ 234 (236)
T d1sfla_ 167 NDVLNLLQAMSTFSDTM-DCKVVGIS--MSKLGLISRTAQGVFGGALTYGCIGE-PQAPGQIDVTDLKAQVT 234 (236)
T ss_dssp HHHHHHHHHHHHHHHHC-SSEEEEEE--CTGGGHHHHHTGGGGTBCEEEEBSSC-CSSTTCCBHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcc-CCCEEEEe--cCCcchHHHHHHHHhCCceEEccCCC-CCCCCCcCHHHHHHHHh
Confidence 7777777665 4443 77866533 22334667777888899998888754 56799999999877664
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.67 E-value=1.9 Score=46.72 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=100.8
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCC--------------hHHHHHHHH
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLN--------------SVPNLVKGM 786 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~n--------------d~~~~~~~i 786 (1427)
++++.+++..|+....... ..|. .+++ .....+.+.+.|+|.+-+-.++- +.+.+...+
T Consensus 91 ~~i~~~~~~~~~~~~~~~~----~~~~--~~~d-~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~ 163 (312)
T d1gtea2 91 QSVTELKADFPDNIVIASI----MCSY--NKND-WMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNIC 163 (312)
T ss_dssp HHHHHHHHHCTTSEEEEEE----CCCS--CHHH-HHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHH
T ss_pred hhhcccccccccccccccc----cccc--chhH-HHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHH
Confidence 4456666666665433322 1121 1222 33345556678999888866542 345677778
Q ss_pred HHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccC----------------------
Q psy15244 787 DAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAG---------------------- 844 (1427)
Q Consensus 787 ~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G---------------------- 844 (1427)
+.+++.... -+-+- . .|+. . ...++++.+.++|++-|.+.+|.+
T Consensus 164 ~~v~~~~~~--pv~vK--l-----~~~~--~---~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (312)
T d1gtea2 164 RWVRQAVQI--PFFAK--L-----TPNV--T---DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTT 229 (312)
T ss_dssp HHHHHHCSS--CEEEE--E-----CSCS--S---CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBC
T ss_pred HHHhhccCC--ceeec--c-----cccc--h---hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccc
Confidence 888876541 11111 1 2321 1 245788888999999999988743
Q ss_pred ------cCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 845 ------LLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 845 ------~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
.....-+.+.|+.+++..|++||-.=.==..| ..+++++.+||+.|..+..=|-.++ --.+++...|+
T Consensus 230 ~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~---~d~~~~l~aGA~~Vqv~ta~~~~G~--~~i~~i~~~L~ 303 (312)
T d1gtea2 230 YGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSA---ESGLQFLHSGASVLQVCSAVQNQDF--TVIQDYCTGLK 303 (312)
T ss_dssp CEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSH---HHHHHHHHTTCSEEEESHHHHTSCT--THHHHHHHHHH
T ss_pred cccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCH---HHHHHHHHcCCCeeEECHhhhccCh--HHHHHHHHHHH
Confidence 11224467789999999888887543322222 3556778899999999876554332 22444444443
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.56 E-value=1.5 Score=46.47 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHh--cCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLK-DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKA--GADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~-Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~A--Gad~V 893 (1427)
.+.+++++.|++..+.|||.|-|+ +..|.-....+.++|+.+.... ++||.+-+-+ ...+-+|+++ |+.+|
T Consensus 37 ~d~d~~~~~A~~qv~~GA~iLDIn~~~~~~~e~~~m~~li~~l~~~~-d~PlsIDT~~-----~~v~eaaLk~~~G~~iI 110 (260)
T d3bofa1 37 GNEEIVIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVS-NVPLSLDIQN-----VDLTERALRAYPGRSLF 110 (260)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEECSSGGGSCHHHHHHHHHHHHHHT-CSCEEEECCC-----HHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeecCCchhhhHHHHHHHHHHHHhcC-CCCccccCCC-----HHHHHHHHHHhcCcceE
Confidence 466899999999999999999887 5677777788999999999998 9999998776 4556678887 99999
Q ss_pred EeccccCCCCCCCCcHHHHHHHHHhC
Q psy15244 894 DVAADSMSGICSQPAMGTIVSCLENT 919 (1427)
Q Consensus 894 D~av~GmG~~tgn~~lE~vv~~L~~~ 919 (1427)
+. ++|.-+ ..+.++...+++
T Consensus 111 Ns-is~e~~-----~~~~~~~l~~~y 130 (260)
T d3bofa1 111 NS-AKVDEE-----ELEMKINLLKKY 130 (260)
T ss_dssp EE-EESCHH-----HHHHHHHHHHHH
T ss_pred ee-cccccc-----hHHHHHHHHHhc
Confidence 84 444321 234455555543
|
| >d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Duplicated hybrid motif family: Glucose permease-like domain: Glucose permease IIa domain, IIa-glc species: Bacillus subtilis [TaxId: 1423]
Probab=91.26 E-value=0.14 Score=50.64 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.3
Q ss_pred EEEEecCCCeeCCCCEEEEEe
Q psy15244 1406 KEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1406 ~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
=+.+|++||.|++||+|+++.
T Consensus 93 F~~~v~~Gd~Vk~G~~L~~~D 113 (158)
T d1gpra_ 93 FTSFVSEGDRVEPGQKLLEVD 113 (158)
T ss_dssp EEECCCTTCEECTTCEEEEEC
T ss_pred eEEEEcCCCEEcCCCEEEEeC
Confidence 457899999999999999875
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=90.97 E-value=0.84 Score=49.55 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCCEEEEeccCChH----HHHHHHHHHHHHhcCCCcEEEEEEEeeccC----CCC--CCCCCCHHHHHHHH
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSV----PNLVKGMDAVQQVTGGSTIVEATICYAGDL----TNP--NKKKYSLNYYEDLA 826 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~----~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~----~~p--~~~~~~~~~~~~~a 826 (1427)
+.+.+|.++|.+.+-+=.|--++ +.-++.++.++..|. .+|+-|-..+.- ... ...-++++...+++
T Consensus 86 e~i~~ai~~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv---~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv 162 (305)
T d1rvga_ 86 ESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGV---TVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFM 162 (305)
T ss_dssp HHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTC---EEEEEESCCCCSCC------CCTTCCCHHHHHHHH
T ss_pred hhhHHHHhcCCceEEEcCccccHHHHHHHHHHHHHHhchhce---eEEeeeeeeecccccccccccccccCCHHHHHHHH
Confidence 45889999999887655444443 455778889999998 899888776521 111 11235677777665
Q ss_pred HHHHHCCCCEEEEc--cccCcC----CHHHHHHHHHHHHHHcCCceEEEee-------------------cCCcchHHHH
Q psy15244 827 KQLVESGAQVLCLK--DMAGLL----KPTAAKLLIGSFREKYPNILIHVHT-------------------HDMAGTGVAT 881 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~--Dt~G~l----~P~~~~~lv~~lr~~~p~ipi~~H~-------------------Hnd~GlA~An 881 (1427)
+ +.|+|.+.++ -.=|.- +|.-=.++++.+++.. ++||.+|. |-++|..-..
T Consensus 163 ~---~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~ 238 (305)
T d1rvga_ 163 E---RTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPED 238 (305)
T ss_dssp H---HHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHH
T ss_pred H---HhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc-CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHH
Confidence 5 4699987774 222322 1323456788888887 89999987 6688999999
Q ss_pred HHHHHHhcCCEEEec
Q psy15244 882 TLACVKAGADIVDVA 896 (1427)
Q Consensus 882 ~laAi~AGad~VD~a 896 (1427)
...|+..|+.-|+..
T Consensus 239 i~~ai~~GV~KiNi~ 253 (305)
T d1rvga_ 239 IKKAISLGIAKINTD 253 (305)
T ss_dssp HHHHHHTTEEEEEEC
T ss_pred HHHHHHcCeEEEEeC
Confidence 999999999988774
|
| >d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Duplicated hybrid motif family: Glucose permease-like domain: Glucose permease IIa domain, IIa-glc species: Mycoplasma capricolum [TaxId: 2095]
Probab=90.91 E-value=0.055 Score=53.29 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=39.6
Q ss_pred cCCCeEEEEEEecCCCEEecCCEEEEEEc--C-----CceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSV--M-----KTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1362 APm~G~v~~v~V~~Gd~V~~G~~l~~iea--m-----Kme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
.-+.|.-.+++|++||+|++||+|+...- . ...+.+...-... ..+.+.....|++||.|++++
T Consensus 84 V~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~-~~~~~~~~g~V~~Gd~i~~ik 154 (154)
T d2gpra_ 84 VSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGG-KTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp GGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSS-CCCSCBCCEEECTTCEEEEEC
T ss_pred cccCCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCC-ceEEecccCcCcCCCEEEEeC
Confidence 34556666899999999999999998842 2 1222221111110 122233444789999999874
|
| >d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Duplicated hybrid motif family: Glucose permease-like domain: Glucose-specific factor III (glsIII) species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.11 Score=50.97 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=37.7
Q ss_pred CCCceecCCCeEEEEEEecCCCE----EecC-CEEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQ----VKKN-DVLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~----V~~G-~~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..+.|.||..|+|..+.- -|-. -..| +.|+.|--. +....|.-=+.+|++||.|.+||+|++++
T Consensus 37 ~~~~v~AP~dG~V~~v~~-T~HAigi~t~~G~eiLIHiGid------TV~L~G~gF~~~v~~Gd~V~~G~~L~~~D 105 (150)
T d2f3ga_ 37 TGNKMVAPVDGTIGKIFE-TNHAFSIESDSGVELFVHFGID------TVELKGEGFKRIAEEGQRVKVGDTVIEFD 105 (150)
T ss_dssp CSSEEECSSSEEEEEECT-TSSEEEEEETTSCEEEEECSBS------GGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred CCCeEEeecCEEEEEECC-CCCEEEEEeCCceEEEEEEccc------hhhcCCcceEEEecCCCEECCCCEEEEEc
Confidence 457899999999987642 1111 1122 222222110 11123333457899999999999999875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=90.18 E-value=0.31 Score=44.92 Aligned_cols=87 Identities=14% Similarity=-0.041 Sum_probs=53.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccce--EEEcCCCCCcccCCCCHHHHHHHHHhcCCCEE
Q psy15244 57 MEKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQ--AFLVGKGMPPVAAYLNIPEIICIAKNNNVDAI 134 (1427)
Q Consensus 57 ~kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe--~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI 134 (1427)
-++|||+|.|.+|.+-++.+.+.|.+++++....... ...++++ ...+. ..|.. +. -.+++.|
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~--~~~~~~~~~i~~~~------~~~~~-~d------l~~~~lv 76 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQ--FTVWANEGMLTLVE------GPFDE-TL------LDSCWLA 76 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHH--HHHHHTTTSCEEEE------SSCCG-GG------GTTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChH--HHHHHhcCCceeec------cCCCH-HH------hCCCcEE
Confidence 4799999999999999999999999988775544321 1111111 11111 11211 11 1357777
Q ss_pred EeCCCcccccHHHHHHHHHCCCce
Q psy15244 135 HPGYGFLSEREDFAKAVIGAGLEF 158 (1427)
Q Consensus 135 ~pg~gflsE~~~~a~~~e~~Gi~f 158 (1427)
+...+--..|..+.+.|.+.|+++
T Consensus 77 ~~at~d~~~n~~i~~~a~~~~ilV 100 (113)
T d1pjqa1 77 IAATDDDTVNQRVSDAAESRRIFC 100 (113)
T ss_dssp EECCSCHHHHHHHHHHHHHTTCEE
T ss_pred eecCCCHHHHHHHHHHHHHcCCEE
Confidence 766655445667777777877763
|
| >d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Duplicated hybrid motif family: Glucose permease-like domain: Glucose-specific factor III (glsIII) species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.14 Score=50.03 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=44.0
Q ss_pred cCCCeEEEEEEecCCCEEecCCEEEEEEc-------CCceeeeecCCCeEEEEEEecCCCeeCCCC-EEEEEe
Q psy15244 1362 APMPGNIIEVKVKVGQQVKKNDVLIVMSV-------MKTETLIHASADGVVKEIFVEVGGQVAQND-LVVVLD 1426 (1427)
Q Consensus 1362 APm~G~v~~v~V~~Gd~V~~G~~l~~iea-------mKme~~i~Ap~~G~V~~i~v~~G~~V~~g~-~L~~i~ 1426 (1427)
.-+.|.-.+++|++||+|++||+|+...- -.+.+.+.-.-......+....| .|.+|+ +|++++
T Consensus 78 V~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g-~v~~g~~~i~~i~ 149 (150)
T d2f3ga_ 78 VELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTVGETPVIRIK 149 (150)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCS-EECTTTSEEEEEE
T ss_pred hhcCCcceEEEecCCCEECCCCEEEEEcHHHHHhcCCCCeeEEEEECcHhcceeeecCC-cEeeCCcEEEEEE
Confidence 35677778999999999999999998843 22444444444444555666666 467775 788764
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.99 E-value=1.4 Score=46.02 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=108.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccc--cCCCcch
Q psy15244 677 RVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGY--SNYSPAE 754 (1427)
Q Consensus 677 r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy--~~~~~nv 754 (1427)
..+.+|+.++++.-.+ -|+.++-++.. | ....+.+.+. .++++.. .+|| ...+-..
T Consensus 32 ~~T~~~i~~lc~~A~~--~~~~avcV~p~--------~-----v~~a~~~l~~-s~v~v~t------VigFP~G~~~~~~ 89 (234)
T d1n7ka_ 32 RATEEDVRNLVREASD--YGFRCAVLTPV--------Y-----TVKISGLAEK-LGVKLCS------VIGFPLGQAPLEV 89 (234)
T ss_dssp TCCHHHHHHHHHHHHH--HTCSEEEECHH--------H-----HHHHHHHHHH-HTCCEEE------EESTTTCCSCHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCeEEEECcH--------h-----HHHHHHHhhc-CCCceEE------EEecCCCCCcHHH
Confidence 3667888888876655 47777765420 1 1122222221 1344332 3454 3345555
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCh-----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLNS-----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQL 829 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~nd-----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l 829 (1427)
.-.-++.|++.|.|.+-+...++. .+.+...++.++..|. .+-+-+... ..+.+.+..+++.+
T Consensus 90 k~~E~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~---~lKVIlEt~---------~L~~~~i~~a~~~a 157 (234)
T d1n7ka_ 90 KLVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGA---VVKVILEAP---------LWDDKTLSLLVDSS 157 (234)
T ss_dssp HHHHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTC---EEEEECCGG---------GSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCc---eEEEEEecc---------ccchHHHHHHHHHH
Confidence 666688999999999998765552 3456677777777776 555433321 46889999999999
Q ss_pred HHCCCCEEEEccccCc----CCHHHHHHHHHHHHHHcCCceEEEeecCCcchH-HHHHHHHHHhcCCEEEec
Q psy15244 830 VESGAQVLCLKDMAGL----LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTG-VATTLACVKAGADIVDVA 896 (1427)
Q Consensus 830 ~~~Gad~i~i~Dt~G~----l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA-~An~laAi~AGad~VD~a 896 (1427)
.++|||-| |=+.|. .+|..+..+....+.. ++.| ..- -|-- ...+++-+++||+.|-+|
T Consensus 158 ~~aGadFV--KTSTG~~~~gat~~~~~~l~~~~~~~--~vgI--Kas--GGIrt~~~a~~~i~aGa~rIGtS 221 (234)
T d1n7ka_ 158 RRAGADIV--KTSTGVYTKGGDPVTVFRLASLAKPL--GMGV--KAS--GGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp HHTTCSEE--ESCCSSSCCCCSHHHHHHHHHHHGGG--TCEE--EEE--SSCCSHHHHHHHHHTTCSEEEET
T ss_pred HHhhhhhe--eecccccCCCCCHHHHHHHHHHhcCC--CCcE--Eee--CCcCCHHHHHHHHHccCceeecc
Confidence 99999964 555664 4677666665554421 2333 221 0111 345677789999988554
|
| >d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: Lysine biosynthesis enzyme LysX, N-terminal domain domain: Lysine biosynthesis enzyme LysX, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=89.86 E-value=0.34 Score=42.98 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeCCCcccccHHHH
Q psy15244 69 AIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPGYGFLSEREDFA 148 (1427)
Q Consensus 69 a~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg~gflsE~~~~a 148 (1427)
-.+++++++++|+++..++...- .+.++.+... -...|+|+|-....+....++
T Consensus 13 Ek~L~~a~~~rG~~~~~id~~~~-----------~~~l~~~~~~---------------~~~~D~Vi~R~~s~~~~~~v~ 66 (88)
T d1uc8a1 13 ERMLFERAEALGLPYKKVYVPAL-----------PMVLGERPKE---------------LEGVTVALERCVSQSRGLAAA 66 (88)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGC-----------CEETTBCCGG---------------GTTCCEEEECCSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEehhhc-----------EEEccCCCCc---------------cCCCCEEEEeccccchHHHHH
Confidence 56799999999999998865432 2333311111 134899999865444445788
Q ss_pred HHHHHCCCceeCCCHHHHHHhCC
Q psy15244 149 KAVIGAGLEFIGPAPNVLKTLGD 171 (1427)
Q Consensus 149 ~~~e~~Gi~fiGps~eai~~~~D 171 (1427)
+.++..|++.+ +++++++.|+|
T Consensus 67 ~~lE~~Gv~v~-Ns~~aI~~c~D 88 (88)
T d1uc8a1 67 RYLTALGIPVV-NRPEVIEACGD 88 (88)
T ss_dssp HHHHHTTCCEE-SCHHHHHHHHB
T ss_pred HHHHHCCCcEe-ccHHHHHhhCC
Confidence 99999999977 89999999876
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.85 E-value=0.18 Score=47.78 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=51.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEecCCCccCccccccceEEEcCCCCCcccCCCCHHHHHHHHHhcCCCEEEeC
Q psy15244 58 EKILIANRSEVAIRVARACNEMGIKSVGIYSEQDKFSAHRTKVDQAFLVGKGMPPVAAYLNIPEIICIAKNNNVDAIHPG 137 (1427)
Q Consensus 58 kkVLIagrGeia~riiraa~elGi~~vav~s~~d~~s~~~~~aDe~~~i~~~~~~~~~yldi~~Ii~ia~~~~vDaI~pg 137 (1427)
|+++|+|-|.++..+++.+.+.|+++++++.+++............+. ++. .+. .+++-+.-.++|+++..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~-gd~-------~~~-~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVI-ANA-------TEE-NELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEE-CCT-------TCT-THHHHHTGGGCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCccee-eec-------ccc-hhhhccCCccccEEEEE
Confidence 578999999999999999999999999998887764444444444443 311 222 34444444568887766
Q ss_pred CC
Q psy15244 138 YG 139 (1427)
Q Consensus 138 ~g 139 (1427)
.+
T Consensus 72 ~~ 73 (134)
T d2hmva1 72 IG 73 (134)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=89.77 E-value=0.69 Score=49.89 Aligned_cols=34 Identities=41% Similarity=0.535 Sum_probs=28.3
Q ss_pred eeccceeEeecccccccchhhhhccccccccccc
Q psy15244 609 VRKLKHVLLTDTTFRDAHQSLLATRVRTYDLKKV 642 (1427)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~ 642 (1427)
++.++.+.|.|||.||+.||+-+++.++-|..+.
T Consensus 5 ~~~p~~i~I~D~tlRDG~Qs~~~~~~~~~~ki~i 38 (303)
T d1rqba2 5 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGA 38 (303)
T ss_dssp CCCSEECEEEECTTTHHHHHHSTTCCCGGGTGGG
T ss_pred CCCCCeeEEEECCCcccccCCCCcCCCHHHHHHH
Confidence 5678899999999999999987887777765554
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.41 E-value=0.76 Score=42.69 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCEEEEEc----CCHHHHHHHHHHHHcCCEEEEEecCCCcc---Ccccccc------ceEEEcCCCCCcccCCCCHHHHH
Q psy15244 57 MEKILIAN----RSEVAIRVARACNEMGIKSVGIYSEQDKF---SAHRTKV------DQAFLVGKGMPPVAAYLNIPEII 123 (1427)
Q Consensus 57 ~kkVLIag----rGeia~riiraa~elGi~~vav~s~~d~~---s~~~~~a------De~~~i~~~~~~~~~yldi~~Ii 123 (1427)
+|+|.|+| .+-.+..+++.+.+.|++++.|....+.. ..+..++ |-++..- ++ .....++
T Consensus 1 ~KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~v---p~----~~~~~~l 73 (116)
T d1y81a1 1 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVV---PP----KVGLQVA 73 (116)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECS---CH----HHHHHHH
T ss_pred CcEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEe---CH----HHHHHHH
Confidence 47899998 34568899999999999988886554421 1111122 2222111 00 1145666
Q ss_pred HHHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCC
Q psy15244 124 CIAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPA 162 (1427)
Q Consensus 124 ~ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps 162 (1427)
+-|.+.++.+++--.|. ++.++.+.++++|+.++||+
T Consensus 74 ~~~~~~g~k~v~~~~g~--~~~~~~~~a~~~gi~vigpn 110 (116)
T d1y81a1 74 KEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGR 110 (116)
T ss_dssp HHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSC
T ss_pred HHHHhcCCceEEeccch--hhHHHHHHHHHcCCEEEcCC
Confidence 66777889998876665 55678899999999999985
|
| >d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Duplicated hybrid motif family: Glucose permease-like domain: Glucose permease IIa domain, IIa-glc species: Mycoplasma capricolum [TaxId: 2095]
Probab=89.17 E-value=0.22 Score=48.83 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=38.3
Q ss_pred CCCceecCCCeEEEEEEecCCCE--E--ecCC-EEEEEEcCCceeeeecCCCeEEEEEEecCCCeeCCCCEEEEEe
Q psy15244 1356 TAGEIGAPMPGNIIEVKVKVGQQ--V--KKND-VLIVMSVMKTETLIHASADGVVKEIFVEVGGQVAQNDLVVVLD 1426 (1427)
Q Consensus 1356 ~~~~V~APm~G~v~~v~V~~Gd~--V--~~G~-~l~~ieamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~L~~i~ 1426 (1427)
..+.|.||..|+|..+.- -|-. + +.|- .|+.+--. +....|.-=+.+|++||.|.+||+|++++
T Consensus 43 ~~~~v~AP~dG~I~~i~~-T~HAigi~t~~G~eiLIHiGid------TV~L~G~gF~~~v~~Gd~V~~G~~L~~~D 111 (154)
T d2gpra_ 43 KSNDFHAPVSGKLVTAFP-TKHAFGIQTKSGVEILLHIGLD------TVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SSSEEECSSCEEEEECCT-TCSEEEEECTTSCEEEEECSSS------GGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred cCCEEEEecCeEEEEECC-CCcEEEEEeCCCCEEEEEEccc------ccccCCceeEEEecCCCEEcCCCEEEEEc
Confidence 457899999999876542 1111 1 1122 22222100 12223444568899999999999999875
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.91 E-value=0.75 Score=44.18 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=66.3
Q ss_pred CCEEEEEcC----CHHHHHHHHHHHHcCCEEEEEecCCCccC---ccccccceEEEcCCCCCcccCCC---CHHHHHHHH
Q psy15244 57 MEKILIANR----SEVAIRVARACNEMGIKSVGIYSEQDKFS---AHRTKVDQAFLVGKGMPPVAAYL---NIPEIICIA 126 (1427)
Q Consensus 57 ~kkVLIagr----Geia~riiraa~elGi~~vav~s~~d~~s---~~~~~aDe~~~i~~~~~~~~~yl---di~~Ii~ia 126 (1427)
.++|.|+|. +-.+.++++.+++.|++++.|........ .+..++|- +...+-+.-+. ....+++-|
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dl----p~~iD~v~i~vp~~~~~~~~~e~ 94 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDI----PDKIEVVDLFVKPKLTMEYVEQA 94 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGC----SSCCSEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCccccccccc----CccceEEEEEeCHHHHHHHHHHH
Confidence 468999994 45789999999999999998876543211 11222210 10001111112 245667777
Q ss_pred HhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCC
Q psy15244 127 KNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPA 162 (1427)
Q Consensus 127 ~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps 162 (1427)
.+.++.+++-..|.. +.+..+.++++|+.++||.
T Consensus 95 ~~~g~k~v~~~~G~~--~ee~~~~a~~~gi~vig~~ 128 (139)
T d2d59a1 95 IKKGAKVVWFQYNTY--NREASKKADEAGLIIVANR 128 (139)
T ss_dssp HHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEESC
T ss_pred HHhCCCEEEEecccc--CHHHHHHHHHCCCEEEcCC
Confidence 778999999888864 4577899999999999984
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=88.42 E-value=5.1 Score=41.18 Aligned_cols=177 Identities=11% Similarity=0.165 Sum_probs=108.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeeccccccccc--CCCcc
Q psy15244 676 TRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYS--NYSPA 753 (1427)
Q Consensus 676 ~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~--~~~~n 753 (1427)
...+.+|+.++++.-.+ .|+.++-++.. .++..++...++++.. .+||- ..+..
T Consensus 15 ~~~t~~~i~~lc~~A~~--~~~~aVcV~P~----------------~v~~a~~~l~~vkv~t------VigFP~G~~~~~ 70 (225)
T d1mzha_ 15 PHLSEKEIEEFVLKSEE--LGIYAVCVNPY----------------HVKLASSIAKKVKVCC------VIGFPLGLNKTS 70 (225)
T ss_dssp TTCCHHHHHHHHHHHHH--TTCSEEEECGG----------------GHHHHHHHCSSSEEEE------EESTTTCCSCHH
T ss_pred CCCCHHHHHHHHHHHHH--hCCcEEEECHH----------------HHHHHHhhccCCceEE------EeccCCCCCcHH
Confidence 34678899998887777 68888876521 1334445555655443 34553 34566
Q ss_pred hHHHHHHHHHhcCCCEEEEeccCChH-----HHHHHHHHHHHHh-cCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHH
Q psy15244 754 EVGAFCRLASQAGIDIFRVFDPLNSV-----PNLVKGMDAVQQV-TGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAK 827 (1427)
Q Consensus 754 vv~~~v~~a~~~Gid~~rif~~~nd~-----~~~~~~i~~a~~~-G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~ 827 (1427)
....-++.|++.|.|.+-+....+.+ +.+..-+..++++ +. ..+-+-+. + + ..+.+.+...++
T Consensus 71 ~K~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~--~~lKVIlE-t-----~---~L~~~ei~~a~~ 139 (225)
T d1mzha_ 71 VKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPS--AVHKVIVE-T-----P---YLNEEEIKKAVE 139 (225)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTT--SEEEEECC-G-----G---GCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccC--ceeehhhh-h-----c---cCCHHHHHHHHH
Confidence 66666889999999999998876644 3344444444432 32 13333222 2 1 467788999999
Q ss_pred HHHHCCCCEEEEccccCc----CCHHHHHHHHHHHHHHcCCceEEEee-cCCcchHHHHHHHHHHhcCCEEEec
Q psy15244 828 QLVESGAQVLCLKDMAGL----LKPTAAKLLIGSFREKYPNILIHVHT-HDMAGTGVATTLACVKAGADIVDVA 896 (1427)
Q Consensus 828 ~l~~~Gad~i~i~Dt~G~----l~P~~~~~lv~~lr~~~p~ipi~~H~-Hnd~GlA~An~laAi~AGad~VD~a 896 (1427)
.+.++|||-| |=+.|. .+|++++.+-+.++. .+.|-.=. =-| ...+++-+++||+.+=+|
T Consensus 140 ~a~~aGadfi--KTSTG~~~~gat~e~v~~m~~~~~~---~~~iKasGGIrt----~~~a~~~i~~Ga~RiGtS 204 (225)
T d1mzha_ 140 ICIEAGADFI--KTSTGFAPRGTTLEEVRLIKSSAKG---RIKVKASGGIRD----LETAISMIEAGADRIGTS 204 (225)
T ss_dssp HHHHHTCSEE--ECCCSCSSSCCCHHHHHHHHHHHTT---SSEEEEESSCCS----HHHHHHHHHTTCSEEEES
T ss_pred HHHHcccceE--eecCCCCCCCCCHHHHHHHHHHhCC---CceEECcCCCCC----HHHHHHHHHhchhheecC
Confidence 9999999965 455564 566665544443332 23332211 111 456788889999987444
|
| >d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=87.45 E-value=1.2 Score=42.25 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=35.2
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHCCCceeCCCHHHHHH
Q psy15244 129 NNVDAIHPG-YGFLSEREDFAKAVIGAGLEFIGPAPNVLKT 168 (1427)
Q Consensus 129 ~~vDaI~pg-~gflsE~~~~a~~~e~~Gi~fiGps~eai~~ 168 (1427)
..+|.++|. +|..-|+-.+...|+..||||+|++..+..+
T Consensus 90 ~~~Dvvf~~lHG~~GEDG~iQglle~~~iPy~G~~~~aSAl 130 (132)
T d1ehia1 90 GDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAV 130 (132)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHH
T ss_pred cCCCEEEEccCCCCccchHHHHHHHHcCCCccCCCHHHHHh
Confidence 468999998 7888899999999999999999999887654
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=85.50 E-value=3.6 Score=43.06 Aligned_cols=179 Identities=11% Similarity=0.063 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHH
Q psy15244 682 DLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRL 761 (1427)
Q Consensus 682 d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~ 761 (1427)
|...+.+.+.. .|++.+=..-| . ++.+ .-++..+.+.+.+.+..++.. ++......++.
T Consensus 40 d~~~~~~~~~~--~g~Da~~~~~G----~------------~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sve~ 98 (251)
T d1ojxa_ 40 DPEYILRLARD--AGFDGVVFQRG----I------------AEKY--YDGSVPLILKLNGKTTLYNGE-PVSVANCSVEE 98 (251)
T ss_dssp CHHHHHHHHHH--HTCSEEEECHH----H------------HHHH--CCSSSCEEEECEECCTTCCSS-CCCEESSCHHH
T ss_pred CHHHHHHHHHh--cCCChhhcchH----H------------HHHh--cccccCeeEEEecCccccccc-chhhhccCHHH
Confidence 44566666666 57777643211 1 1111 113455666677766665443 34444456899
Q ss_pred HHhcCCCEEEEeccCC------hHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q psy15244 762 ASQAGIDIFRVFDPLN------SVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQ 835 (1427)
Q Consensus 762 a~~~Gid~~rif~~~n------d~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad 835 (1427)
|++.|.|-+-+..... .++++.+.++.+++.|+. ..++ .|.- +.......+++++...++.+.++|||
T Consensus 99 a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP-~v~e---~~p~--g~~~~~~~~~~~v~~aaria~ElGaD 172 (251)
T d1ojxa_ 99 AVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLP-LVVW---SYPR--GGKVVNETAPEIVAYAARIALELGAD 172 (251)
T ss_dssp HHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCC-EEEE---ECCC--STTCCCTTCHHHHHHHHHHHHHHTCS
T ss_pred HHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCe-EEEE---Eeec--CCccccCCCHHHHHHHHHHHHHhCCC
Confidence 9999999876655555 256788889999999992 2233 3542 23345578999999999999999999
Q ss_pred EEEEccccCcCCHHHHHHHHHHHHHHcCCceEEEe---ecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 836 VLCLKDMAGLLKPTAAKLLIGSFREKYPNILIHVH---THDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 836 ~i~i~Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H---~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
++-+.=+ | .+.... ..+.... .+|+-+= ...+..--+...-.|+++||.-+-
T Consensus 173 ivK~~~p-~--~~~~~~---~~v~~a~-~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~ 227 (251)
T d1ojxa_ 173 AMKIKYT-G--DPKTFS---WAVKVAG-KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIA 227 (251)
T ss_dssp EEEECCC-S--SHHHHH---HHHHHTT-TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEecCC-C--cHHHHH---HHHHhcC-CCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence 9987422 1 222222 2233332 3454332 344555566777788899987664
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=84.91 E-value=4.9 Score=42.35 Aligned_cols=205 Identities=14% Similarity=0.112 Sum_probs=115.2
Q ss_pred EEeecCcccCCCCCCCcccCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeee
Q psy15244 660 LLTDTTFRDAHQSLLATRVRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMIL 739 (1427)
Q Consensus 660 ~i~DtTlRDG~Qsl~a~r~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~ 739 (1427)
.+|--.|=||.+ .++.++.++-+..|-+ .|.+.|++||-+|--.+-.--.+..|+||.-+.+...+...
T Consensus 10 N~TpDSFsdgg~-----~~~~~~a~~~~~~m~~--~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~---- 78 (264)
T d1ad1a_ 10 NVTPDSFSDGGK-----FNNVESAVTRVKAMMD--EGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDV---- 78 (264)
T ss_dssp ECCGGGCSSTTT-----TCSHHHHHHHHHHHHH--TTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSS----
T ss_pred eCCCCCCCCCCc-----CCCHHHHHHHHHHHHH--CCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCc----
Confidence 344455667765 2567888888888877 69999999987664333222234558887766555543221
Q ss_pred cccccccccCCCcchHHHHHHHHHhcCCCEEE-EeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC-CC
Q psy15244 740 RGNSLVGYSNYSPAEVGAFCRLASQAGIDIFR-VFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK-KY 817 (1427)
Q Consensus 740 Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~r-if~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~-~~ 817 (1427)
.+....|-.+ ..++|.++|++++. |.....|-+ ..+.+++.+. ...+|.+. ..|... .+
T Consensus 79 ----~iSIDT~~~e----Va~~al~~Ga~iINDVs~g~~d~~----~~~~va~~~~-----~~ilmH~~--~~~~~~~~~ 139 (264)
T d1ad1a_ 79 ----KISVDTFRSE----VAEACLKLGVDIINDQWAGLYDHR----MFQVVAKYDA-----EIVLMHNG--NGNRDEPVV 139 (264)
T ss_dssp ----EEEEECSCHH----HHHHHHHTTCCEEEETTTTSSCTH----HHHHHHHTTC-----EEEEECCC--CTTCCSCHH
T ss_pred ----ccchhhhhHH----HHHHHHhcCCcEeecccccccccc----HHHHHhhcCc-----ceeeeeec--cccccCccc
Confidence 1222233333 35678889999998 334455543 3344566665 23344442 123110 01
Q ss_pred C--HHHHHHHHHHHHHCCCC--EEEEccccCcC-CHHHHHHHHHHHHHHc-CCceEEEee----------------cCCc
Q psy15244 818 S--LNYYEDLAKQLVESGAQ--VLCLKDMAGLL-KPTAAKLLIGSFREKY-PNILIHVHT----------------HDMA 875 (1427)
Q Consensus 818 ~--~~~~~~~a~~l~~~Gad--~i~i~Dt~G~l-~P~~~~~lv~~lr~~~-p~ipi~~H~----------------Hnd~ 875 (1427)
. .+++.+..+.+..+|++ .|.|-=-.|.. ++++=.+|++.+..-. -+.||-++. ++-.
T Consensus 140 ~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~ll~~l~~~~~~g~PiLiG~SRKsfig~l~g~~~~~~~r~ 219 (264)
T d1ad1a_ 140 EEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERD 219 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHCHHHHHTTCSCBEECCTTSHHHHTTSSSCCCGGGGH
T ss_pred hhhhhHHHHHHHHHHhhccccceEEeccCcCccccchhHHHHHHHHHHhhccCCceeeeccHHHHHHHHhCCCCChHHhh
Confidence 1 34566666778888985 45543334443 4566677777665321 166764321 1212
Q ss_pred chHHHHHHHHHHhcCCEEE
Q psy15244 876 GTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 876 GlA~An~laAi~AGad~VD 894 (1427)
...+|....|+..||++|=
T Consensus 220 ~~t~a~~~~a~~~Ga~iiR 238 (264)
T d1ad1a_ 220 EVTAATTAYGIMKGVRAVR 238 (264)
T ss_dssp HHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHCCCCEEE
Confidence 3334555566777888763
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=84.59 E-value=1.5 Score=46.46 Aligned_cols=178 Identities=13% Similarity=0.075 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCc--------hhh-hhhcccc-----ChHHHHHHHHHhCCCCceeeeeccccc
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAV--------SHT-CLKFLKE-----CPWERLAELRELIPNIPFQMILRGNSL 744 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggat--------fd~-~~rfl~e-----~p~erl~~lr~~~p~~~~qml~Rg~n~ 744 (1427)
+.+.-++++..|++ .|++.||+|-|.+ ... +.|-|.. +-++-++++|+.. .+++-++
T Consensus 29 ~~~~~~~~l~~l~~--~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~-~~p~ilm------ 99 (261)
T d1rd5a_ 29 DLATTAEALRLLDG--CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLL------ 99 (261)
T ss_dssp CHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEE------
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccc-cCceeee------
Confidence 45778999999999 7999999985433 111 1222221 2355566666544 3454333
Q ss_pred ccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 745 VGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 745 vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
+ |-.++.+.|++++.++|+|-+-|.|-.. +.-....+.+++.|+ . .|.+. +| ..+.+-+.+
T Consensus 100 -~---Y~n~~~~~~~~~~~~~GvdG~IipDlp~--eE~~~~~~~~~~~gl---~---~I~lv----aP---tt~~~Ri~~ 160 (261)
T d1rd5a_ 100 -S---YYKPIMFRSLAKMKEAGVHGLIVPDLPY--VAAHSLWSEAKNNNL---E---LVLLT----TP---AIPEDRMKE 160 (261)
T ss_dssp -C---CSHHHHSCCTHHHHHTTCCEEECTTCBT--TTHHHHHHHHHHTTC---E---ECEEE----CT---TSCHHHHHH
T ss_pred -e---eecchhhHHHHHHHhcCceeeeecCccH--HHHHHHHHHHhcccc---c---eEEEe----cc---CCchhHHHH
Confidence 1 2233455578888999999999988543 345566778888998 2 22333 55 355665555
Q ss_pred HHHHHHHCCCCEEEE---ccccCc--CCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHH-HHHHhcCCEE
Q psy15244 825 LAKQLVESGAQVLCL---KDMAGL--LKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTL-ACVKAGADIV 893 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i---~Dt~G~--l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~l-aAi~AGad~V 893 (1427)
+++.. -.-||+ .=++|. ..+....++++.+|+.. ++||.+= +|.....-. ...++|||.|
T Consensus 161 i~~~a----~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vG----FGI~~~e~v~~~~~~gaDGv 226 (261)
T d1rd5a_ 161 ITKAS----EGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVG----FGISKPEHVKQIAQWGADGV 226 (261)
T ss_dssp HHHHC----CSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEE----SCCCSHHHHHHHHHTTCSEE
T ss_pred HHhcC----cchhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEE----cCCCCHHHHHHHHhcCCCEE
Confidence 55443 233343 344443 34567899999999997 8997652 233333333 3455688765
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=84.15 E-value=4.7 Score=43.90 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=68.2
Q ss_pred cCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccccCcCCHHHHHHH
Q psy15244 775 PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLKDMAGLLKPTAAKLL 854 (1427)
Q Consensus 775 ~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~l 854 (1427)
...+.+.....++.+++... .+...+.. +| + ..+.++.+.++|+|.|+| |++ ...+....+.
T Consensus 68 r~~~~e~~~~~i~~vk~~~~---~v~~~vgv-----~~-------~-~~e~~~~li~agvd~ivI-d~A-~G~~~~~~~~ 129 (330)
T d1vrda1 68 KNLTPDEQARQVSIVKKTRL---LVGAAVGT-----SP-------E-TMERVEKLVKAGVDVIVI-DTA-HGHSRRVIET 129 (330)
T ss_dssp SSSCHHHHHHHHHHHHTCCB---CCEEEECS-----ST-------T-HHHHHHHHHHTTCSEEEE-CCS-CCSSHHHHHH
T ss_pred cccchhhhHHHHHHHhhhcc---EEEEEEec-----CH-------H-HHHHHHHHHHCCCCEEEE-ecC-CCCchhHHHH
Confidence 33345555556677777665 44333221 22 2 346678889999999887 544 4566778889
Q ss_pred HHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCC
Q psy15244 855 IGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSG 902 (1427)
Q Consensus 855 v~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~ 902 (1427)
++.+|+.+|+++|-.+.=-|.- .+...+++|||.|=+ |+|.
T Consensus 130 ik~ik~~~~~~~viaGnV~t~~----~a~~l~~~GaD~v~V---Gig~ 170 (330)
T d1vrda1 130 LEMIKADYPDLPVVAGNVATPE----GTEALIKAGADAVKV---GVGP 170 (330)
T ss_dssp HHHHHHHCTTSCEEEEEECSHH----HHHHHHHTTCSEEEE---CSSC
T ss_pred HHHHHHhCCCCCEEeechhHHH----HHHHHHHcCCCEEee---cccc
Confidence 9999999999987666444332 246677999999865 5554
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=83.73 E-value=1.2 Score=47.23 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHH--hcCCEE
Q psy15244 817 YSLNYYEDLAKQLVESGAQVLCLK-DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVK--AGADIV 893 (1427)
Q Consensus 817 ~~~~~~~~~a~~l~~~Gad~i~i~-Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~--AGad~V 893 (1427)
.|++++++.|+++.+.|||+|-|. +....-..++...++..+++.. ++||.+-+-+ ...+-+|++ +|+++|
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g~~~~~e~e~~~~vi~~l~~~~-~vpiSIDT~~-----~~v~~aal~~~~Ga~iI 95 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEVS-NLTLCLDSTN-----IKAIEAGLKKCKNRAMI 95 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----CHHHHHHHHHHHHHTTC-CSEEEEECSC-----HHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHHhh-cCCccccCCc-----cHHHHHHHHhhccccee
Confidence 588999999999999999999997 4333334456777788887665 9999997765 344556777 799999
Q ss_pred Eec
Q psy15244 894 DVA 896 (1427)
Q Consensus 894 D~a 896 (1427)
+--
T Consensus 96 NdI 98 (262)
T d1f6ya_ 96 NST 98 (262)
T ss_dssp EEE
T ss_pred ech
Confidence 744
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=83.56 E-value=6.2 Score=41.95 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC-----h----HHHHHHHHHHHHH-hcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 755 VGAFCRLASQAGIDIFRVFDPLN-----S----VPNLVKGMDAVQQ-VTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 755 v~~~v~~a~~~Gid~~rif~~~n-----d----~~~~~~~i~~a~~-~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
..+.+.+.+..|+|.|.==-.+. . ++...++++.+.+ .|. .+-.+.+.| .+.+.+.+
T Consensus 37 ~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~~TG~---~~lya~NiT----------~~~~em~~ 103 (283)
T d1ykwa1 37 FAEIAYQSWLGGLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGE---PKIYLANIT----------DEVDSLME 103 (283)
T ss_dssp HHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSS---CCEEEEECC----------CCGGGHHH
T ss_pred HHHHHHHHHhCCCceecCCccCCCCCCccHHHHHHHHHHHHHHHHHHhCC---eeEEeeecC----------CCHHHHHH
Confidence 44456777789999986221222 1 2344555554444 454 333333333 34567888
Q ss_pred HHHHHHHCCCCEEEEcc-ccCcCCHHHHHHHHHHHHHHcCCceEEEee--------cCCcchHHHHHH-HHHHhcCCEEE
Q psy15244 825 LAKQLVESGAQVLCLKD-MAGLLKPTAAKLLIGSFREKYPNILIHVHT--------HDMAGTGVATTL-ACVKAGADIVD 894 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i~D-t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~--------Hnd~GlA~An~l-aAi~AGad~VD 894 (1427)
-++.+.++|++.+-+.- ++|+ ..+..|++. +++||+.|. +.+.|+..--.- -.=.+|||.|+
T Consensus 104 ra~~~~~~G~~~~mv~~~~~G~-------~a~~~l~~~-~~lpi~~H~a~~g~~~r~~~~Gis~~vl~KL~RLaGaD~ih 175 (283)
T d1ykwa1 104 KHDVAVRNGANALLINALPVGL-------SAVRMLSNY-TQVPLIGHFPFIASFSRMEKYGIHSKVMTKLQRLAGLDAVI 175 (283)
T ss_dssp HHHHHHHHTCCEEEEEHHHHCH-------HHHHHHHHH-CSSCEEEECTTTHHHHCSTTSEECHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhCCCEEEEecccchH-------HHHHHHHhh-cCCCeEeeeccceeeccCcCCCccHHHHHHHHHHcCCCcee
Confidence 89999999999887764 4463 345566765 488988886 334555432222 22349999998
Q ss_pred eccccCCCCCCCCc
Q psy15244 895 VAADSMSGICSQPA 908 (1427)
Q Consensus 895 ~av~GmG~~tgn~~ 908 (1427)
+- ++|++-+-..
T Consensus 176 ~~--~~gg~~~~~~ 187 (283)
T d1ykwa1 176 MP--GFGDRVMTPE 187 (283)
T ss_dssp EE--CSSTTSSSCH
T ss_pred ec--CCcccccCch
Confidence 65 6777766554
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=83.38 E-value=4 Score=44.54 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q psy15244 757 AFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQV 836 (1427)
Q Consensus 757 ~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~ 836 (1427)
+.++...++|+|.+-|-.+-.+-..+...++.+|+.... ..+.+.-+.| + +.++.|.++|||.
T Consensus 101 e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~-~~viaGnV~t-----~-----------~~a~~l~~~GaD~ 163 (330)
T d1vrda1 101 ERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPD-LPVVAGNVAT-----P-----------EGTEALIKAGADA 163 (330)
T ss_dssp HHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTT-SCEEEEEECS-----H-----------HHHHHHHHTTCSE
T ss_pred HHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHhCCC-CCEEeechhH-----H-----------HHHHHHHHcCCCE
Confidence 458888999999988877777777788888888876531 1222222222 1 5688899999999
Q ss_pred EEEc----------cccCcCCHHH-HHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEe
Q psy15244 837 LCLK----------DMAGLLKPTA-AKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDV 895 (1427)
Q Consensus 837 i~i~----------Dt~G~l~P~~-~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~ 895 (1427)
|.+- ..+|...|.. +-.++...++.+ ++||-.-..-..|-.+| +|+.+|||.|-.
T Consensus 164 v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~-~vpvIAdGGi~~~gdia---kAla~GAd~Vm~ 229 (330)
T d1vrda1 164 VKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKY-DVPIIADGGIRYSGDIV---KALAAGAESVMV 229 (330)
T ss_dssp EEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTT-TCCEEEESCCCSHHHHH---HHHHTTCSEEEE
T ss_pred EeeccccCccccccceeccccccchhHHHHHHHHHhc-CceEEecCCcccCCchh---eeeeccCceeee
Confidence 8762 2235666653 223355556666 88988877777665554 566689998853
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=6.6 Score=38.91 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=105.1
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
.+.++.+++++.+.. +++.++++- .-.+ ... .+-++.+++..|+.++-..+. ..| .-..
T Consensus 11 ~~~~~~~~~~~~~~~---~vdiikig~----~~~~---~~G-~~~i~~l~~~~~~~~i~~d~k---------~~d-~~~~ 69 (213)
T d1q6oa_ 11 QTMDSAYETTRLIAE---EVDIIEVGT----ILCV---GEG-VRAVRDLKALYPHKIVLADAK---------IAD-AGKI 69 (213)
T ss_dssp SSHHHHHHHHHHHGG---GCSEEEECH----HHHH---HHC-THHHHHHHHHCTTSEEEEEEE---------ECS-CHHH
T ss_pred CCHHHHHHHHHhcCC---CccEEEeCe----eccc---cCC-HHHHHHHHHhcccccceeEEe---------ecc-chHH
Confidence 456788888888765 888898862 2222 222 456788888888766432221 111 1334
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
+.+.+.++|+|.+-+. +.+..+.++.+++.+++.|. .+...+. + ..+.+ ....+.+.|++.+
T Consensus 70 ~~~~~~~~gad~vtvh-~~~g~~~~~~~~~~~~~~~~---~~~v~~~-~---------~~~~~----~~~~~~~~~~~~~ 131 (213)
T d1q6oa_ 70 LSRMCFEANADWVTVI-CCADINTAKGALDVAKEFNG---DVQIELT-G---------YWTWE----QAQQWRDAGIGQV 131 (213)
T ss_dssp HHHHHHHTTCSEEEEE-TTSCHHHHHHHHHHHHHTTC---EEEEEEC-S---------CCCHH----HHHHHHHTTCCEE
T ss_pred HHHHHHHcCCCEEEEe-ccCCchHHHHHHHHHHHcCC---ceecccC-C---------CCCHH----HHHHHHHhHHHHH
Confidence 5677788999998775 44567788999999999998 5433321 1 13333 3455666788765
Q ss_pred EEc---c--ccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEE
Q psy15244 838 CLK---D--MAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIV 893 (1427)
Q Consensus 838 ~i~---D--t~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~V 893 (1427)
.+. | ..|...+....+.++..+.. ..++.. +-|....|.-.+.++|||++
T Consensus 132 ~~~~~~~~g~~~~~~~~~~l~~i~~~~~~--~~~i~~----~gGi~~~~~~~~~~~Gad~i 186 (213)
T d1q6oa_ 132 VYHRSRDAQAAGVAWGEADITAIKRLSDM--GFKVTV----TGGLALEDLPLFKGIPIHVF 186 (213)
T ss_dssp EEECCHHHHHTTCCCCHHHHHHHHHHHHT--TCEEEE----ESSCCGGGGGGGTTSCCSEE
T ss_pred HHHHhcccCcCCeeCCHHHHHHHHHhhcc--CceEec----CCCcCcCCHHHHHHcCCCEE
Confidence 542 1 22334444444555555542 455543 24666677888999999987
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=82.84 E-value=18 Score=39.08 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=95.7
Q ss_pred HHHHHHhcCCCEEEEec------cCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCC-------CCCH-----
Q psy15244 758 FCRLASQAGIDIFRVFD------PLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKK-------KYSL----- 819 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~------~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~-------~~~~----- 819 (1427)
.++..+++|+..|||=. .-++++.+.+.++.|+++|+ .+-..+.|+..+.+|... ..+.
T Consensus 32 ~~~~lk~~G~n~VRlrvW~~p~~g~~~~~~~~~~~~~a~~~Gm---~vll~~hysd~Wadp~~q~~P~aw~~~~~~~~~~ 108 (334)
T d1foba_ 32 LETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGM---SLYLDLHLSDTWADPSDQTTPSGWSTTDLGTLKW 108 (334)
T ss_dssp HHHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTC---EEEEEECCSSSCCBTTBCBCCTTSCSSCHHHHHH
T ss_pred HHHHHHHcCCCEEEeeeeeCCCCCcCcHHHHHHHHHHHHHCCC---EEEEEecCCCcccCCCcCCCcccccccccccHHH
Confidence 34566789999999863 33578899999999999999 899999998777766321 1222
Q ss_pred ---HHHHHHHHHHHHCCCC--EEEEccc--cCcC-------CHHHHHHH----HHHHHHHc--CCceEEEeecCCcchHH
Q psy15244 820 ---NYYEDLAKQLVESGAQ--VLCLKDM--AGLL-------KPTAAKLL----IGSFREKY--PNILIHVHTHDMAGTGV 879 (1427)
Q Consensus 820 ---~~~~~~a~~l~~~Gad--~i~i~Dt--~G~l-------~P~~~~~l----v~~lr~~~--p~ipi~~H~Hnd~GlA~ 879 (1427)
+|..++++.+.+.|++ .+.|--= .|.+ .+.....| ++++|+.. |.+.+.+|+|+-.....
T Consensus 109 ~~~~~t~~v~~~~k~~~~~~~~vqIgNE~n~g~~w~~g~~~~~~~~a~ll~a~~~aVr~~~~~~~~~i~~~~~~~~~~~~ 188 (334)
T d1foba_ 109 QLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLDDGWSWDQ 188 (334)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEcccccCccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcccccceeeecccCCChhh
Confidence 5666777788888764 5554322 1222 33444555 45555543 46778899988554433
Q ss_pred H--HHHHHHHhc------CCEEEeccccCCCCCCCCcHHHHHHHHH
Q psy15244 880 A--TTLACVKAG------ADIVDVAADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 880 A--n~laAi~AG------ad~VD~av~GmG~~tgn~~lE~vv~~L~ 917 (1427)
. ..-.-+..| .|++-.+..++- .+...+.++...|+
T Consensus 189 ~~~~~~~~~~~g~~~~~~~Dvig~syYp~w--~~~~~l~~l~~~l~ 232 (334)
T d1foba_ 189 QNYFYETVLATGELLSTDFDYFGVSYYPFY--SASATLASLKTSLA 232 (334)
T ss_dssp HHHHHHHHHHTSSSCGGGCCEEEEECCSSS--CTTCCHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCCCcCeEEEecCCCC--CCcccHHHHHHHHH
Confidence 3 233444555 367766666553 23334544444443
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=82.73 E-value=5.8 Score=40.09 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHh-CCCCceeeeecccccccccCCCcchHHH
Q psy15244 679 RTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELREL-IPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 679 ~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~-~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
+.++.+++++.|-+ .|+..+|+. +-.++.++.++.+++. .|+..+.. |. | -+ .+
T Consensus 19 ~~~~a~~~~~al~~--~Gi~~iEit----------lr~p~a~~~i~~l~~~~~~~~~vGa---GT--V------~~--~~ 73 (202)
T d1wa3a1 19 SVEEAKEKALAVFE--GGVHLIEIT----------FTVPDADTVIKELSFLKEKGAIIGA---GT--V------TS--VE 73 (202)
T ss_dssp SHHHHHHHHHHHHH--TTCCEEEEE----------TTSTTHHHHHHHTHHHHHTTCEEEE---ES--C------CS--HH
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEe----------cCCccHHHHHHHHHHhcCCCcEEEe---cc--c------cc--HH
Confidence 56888999999988 899999984 1245667888887753 36654332 11 0 11 33
Q ss_pred HHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVL 837 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i 837 (1427)
.++.|.++|.+.+- .+.-+ ...++++++.+. ..-.. ..|+.... ++.++|++.+
T Consensus 74 ~~~~a~~aGa~fiv--sP~~~----~~v~~~~~~~~i---~~iPG-------------v~TpsEi~----~A~~~G~~~l 127 (202)
T d1wa3a1 74 QCRKAVESGAEFIV--SPHLD----EEISQFCKEKGV---FYMPG-------------VMTPTELV----KAMKLGHTIL 127 (202)
T ss_dssp HHHHHHHHTCSEEE--CSSCC----HHHHHHHHHHTC---EEECE-------------ECSHHHHH----HHHHTTCCEE
T ss_pred HHHHHHhhcccEEe--CCCCc----HHHHHHHHhcCC---ceeCC-------------cCcHHHHH----HHHHCCCCEE
Confidence 48899999999762 23223 345667778887 32221 23443333 4467999998
Q ss_pred EEccccCcCCHHHHH--HHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEE
Q psy15244 838 CLKDMAGLLKPTAAK--LLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVD 894 (1427)
Q Consensus 838 ~i~Dt~G~l~P~~~~--~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD 894 (1427)
-+ -|..+. ..+++|+.-+|++++-- +-|....|+..-+++|+..|-
T Consensus 128 K~-------fPa~~~G~~~lk~l~~p~p~i~~ip----tGGI~~~n~~~~l~aga~avg 175 (202)
T d1wa3a1 128 KL-------FPGEVVGPQFVKAMKGPFPNVKFVP----TGGVNLDNVCEWFKAGVLAVG 175 (202)
T ss_dssp EE-------TTHHHHHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHHHTCSCEE
T ss_pred Ee-------cchhhcCHHHHHHHhCcccCCcEEe----eCCCCHHHHHHHHHCCCeEEE
Confidence 86 343332 57888888889888643 345555677778889998774
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=82.65 E-value=2.9 Score=43.03 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=105.8
Q ss_pred HHHHHHHHhCCCCceeeeecccccccccCCCcchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEE
Q psy15244 721 ERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVE 800 (1427)
Q Consensus 721 erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~ 800 (1427)
+.++.+++..++.++...+--. .|.+.+ +...++|.+.|.+-....+.......++.+++.|. .+.
T Consensus 50 ~~v~~i~~~~~~~~~dvHLMv~-------~P~~~i----~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~---~~G 115 (221)
T d1tqxa_ 50 PVINNLKKYTKSIFFDVHLMVE-------YPEKYV----PLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNL---WCG 115 (221)
T ss_dssp HHHHHHGGGCSSCEEEEEEESS-------CGGGGG----GGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTC---EEE
T ss_pred HHHhhhhhcCCchhhhhhHHhh-------hhhhhh----hhhhhcCceeEEeehhccccchhhHHHHHHHhcCC---eEE
Confidence 4677888888888877766433 455544 44456888877766667778888888999999998 665
Q ss_pred EEEEeeccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEc----cccCcCCHHHHHHHHHHHHHHcCCceEEEeecCCcc
Q psy15244 801 ATICYAGDLTNPNKKKYSLNYYEDLAKQLVESGAQVLCLK----DMAGLLKPTAAKLLIGSFREKYPNILIHVHTHDMAG 876 (1427)
Q Consensus 801 ~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~~Gad~i~i~----Dt~G~l~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~G 876 (1427)
.++ +|+ ++.+.+..+. ....+|.+-+. .-.|-.-=..+.+-|+.+|+..|++.|++ |-|
T Consensus 116 ial-------~p~---t~~~~~~~~l---~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~V----DGG 178 (221)
T d1tqxa_ 116 ISI-------KPK---TDVQKLVPIL---DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV----DGG 178 (221)
T ss_dssp EEE-------CTT---SCGGGGHHHH---TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE----ESS
T ss_pred Eee-------ccc---cccccchhhc---ccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEE----Ecc
Confidence 554 342 3333333222 11236654332 11222222457777889999998888776 789
Q ss_pred hHHHHHHHHHHhcCCEEEeccccCCCCCCCCcHHHHHHHHHh
Q psy15244 877 TGVATTLACVKAGADIVDVAADSMSGICSQPAMGTIVSCLEN 918 (1427)
Q Consensus 877 lA~An~laAi~AGad~VD~av~GmG~~tgn~~lE~vv~~L~~ 918 (1427)
.-.-|.-...++|||++=+ | |..-++.+.+.-+..|+.
T Consensus 179 In~~~i~~l~~aGad~iV~---G-S~if~~~d~~~~i~~Lr~ 216 (221)
T d1tqxa_ 179 LNIETTEISASHGANIIVA---G-TSIFNAEDPKYVIDTMRV 216 (221)
T ss_dssp CCHHHHHHHHHHTCCEEEE---S-HHHHTCSSHHHHHHHHHH
T ss_pred cCHHhHHHHHHcCCCEEEE---C-hHHHCCCCHHHHHHHHHH
Confidence 9999999999999998733 3 223445566666666553
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=82.43 E-value=5.2 Score=42.58 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=115.4
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHH-HHHHHHHhCCCCceeeee-cccccccccCCCcchH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWE-RLAELRELIPNIPFQMIL-RGNSLVGYSNYSPAEV 755 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~e-rl~~lr~~~p~~~~qml~-Rg~n~vgy~~~~~nvv 755 (1427)
...+....+.++-.+..+-+ .|++..++ +.|..-+.+- .++.+++.. ++|+...+ .|. +
T Consensus 25 ~~~e~~~avi~AAe~~~sPv-Ilq~~~~~-----~~~~~~~~~~~~~~~~a~~~-~vpV~lHlDH~~----------~-- 85 (284)
T d1gvfa_ 25 HNAETIQAILEVCSEMRSPV-ILAGTPGT-----FKHIALEEIYALCSAYSTTY-NMPLALHLDHHE----------S-- 85 (284)
T ss_dssp CSHHHHHHHHHHHHHHTCCC-EEEECTTH-----HHHSCHHHHHHHHHHHHHHT-TSCBEEEEEEEC----------C--
T ss_pred CCHHHHHHHHHHHHHHCCCE-EEEcCHhH-----HhhCCHHHHHHHHHHHHHhc-CCeEEeeecccc----------c--
Confidence 34455555555554432233 35554332 3344333322 334444443 45544432 221 1
Q ss_pred HHHHHHHHhcCCCEEEEeccCCh----HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCC-----C-CCCCCCHHHHHHH
Q psy15244 756 GAFCRLASQAGIDIFRVFDPLNS----VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTN-----P-NKKKYSLNYYEDL 825 (1427)
Q Consensus 756 ~~~v~~a~~~Gid~~rif~~~nd----~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~-----p-~~~~~~~~~~~~~ 825 (1427)
.+.+.+|.++|.+.+-+=.|-.+ ++.-++.++.++..|. .+|+-|-..+...+ . ....++++...++
T Consensus 86 ~e~i~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv---~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~F 162 (284)
T d1gvfa_ 86 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDC---SVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRF 162 (284)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTC---EEEEEESCCC-----------CCSSCCHHHHHHH
T ss_pred hHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhcc---ceeeeeeeeccccccccccccccccCCHHHHHHH
Confidence 34588999999998765444443 3455678889999999 89988877653211 1 1223678888877
Q ss_pred HHHHHHCCCCEEEEc--cccCcC--CHHHHHHHHHHHHHHcCCceEEEeecCCcchHHHHHHHHHHhcCCEEEecc
Q psy15244 826 AKQLVESGAQVLCLK--DMAGLL--KPTAAKLLIGSFREKYPNILIHVHTHDMAGTGVATTLACVKAGADIVDVAA 897 (1427)
Q Consensus 826 a~~l~~~Gad~i~i~--Dt~G~l--~P~~~~~lv~~lr~~~p~ipi~~H~Hnd~GlA~An~laAi~AGad~VD~av 897 (1427)
++ +.|+|.|.++ -.=|.- .|.-=.++++.+++.+ ++||.+ |-.+|..--....|++.|+.-|+...
T Consensus 163 v~---~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~-~vPLVl--HGgSG~~~e~i~~ai~~Gi~KiNi~T 232 (284)
T d1gvfa_ 163 VE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV-DVPLVL--HGASDVPDEFVRRTIELGVTKVNVAT 232 (284)
T ss_dssp HH---HHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHC-CSCEEE--CCCTTCCHHHHHHHHHTTEEEEEECH
T ss_pred HH---HhCCCEEeeecCceeeccCCCCccccchhhhhhccc-cCCeEe--eCCCCCCHHHHHHHHHcCeEEEEech
Confidence 76 4699987774 111221 2222346788889888 799877 55678888999999999999987753
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=81.58 E-value=16 Score=40.01 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=86.3
Q ss_pred HHHHHHhcCCCEEEEecc--------------CChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCC------
Q psy15244 758 FCRLASQAGIDIFRVFDP--------------LNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKY------ 817 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~--------------~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~------ 817 (1427)
.++..+++|+..|||-.. .++++.+.++++.|+++|+ .+...+.|+..+.+|.....
T Consensus 43 ~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl---~v~ldlH~sd~wadp~~q~~p~~w~~ 119 (387)
T d1ur4a_ 43 IFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGM---KLLADFHYSDFWADPAKQKAPKAWAN 119 (387)
T ss_dssp HHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTC---EEEEEECSSSSCCSSSCCCCCGGGTT
T ss_pred HHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCC---EEEEEeCCCCCCcCCCCCCCchhhhc
Confidence 467788999999998642 3468899999999999999 88888888755555532111
Q ss_pred -C--------HHHHHHHHHHHHHCCCCEE--EEcc--ccCcC---CHHHHH----HHHHHHHHHcCCceEEEeecCCcch
Q psy15244 818 -S--------LNYYEDLAKQLVESGAQVL--CLKD--MAGLL---KPTAAK----LLIGSFREKYPNILIHVHTHDMAGT 877 (1427)
Q Consensus 818 -~--------~~~~~~~a~~l~~~Gad~i--~i~D--t~G~l---~P~~~~----~lv~~lr~~~p~ipi~~H~Hnd~Gl 877 (1427)
+ .+|..+.++++...|+... .|.- ..|.+ ...... ..++++|+.-|+..+.+|..+-...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~~~~ 199 (387)
T d1ur4a_ 120 LNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETS 199 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTST
T ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCCcCccCcCCHHHHHHHHHHHHHHHHhcCCCceEEEeccCccch
Confidence 1 2344566667777887653 3321 11222 233333 3456677777888888887764332
Q ss_pred H-HHHHHHHHH-hc--CCEEEeccccC
Q psy15244 878 G-VATTLACVK-AG--ADIVDVAADSM 900 (1427)
Q Consensus 878 A-~An~laAi~-AG--ad~VD~av~Gm 900 (1427)
. .-..+..+. .| .|++..+..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~d~ig~s~Y~~ 226 (387)
T d1ur4a_ 200 GRYAWIAETLHRHHVDYDVFASSYYPF 226 (387)
T ss_dssp THHHHHHHHHHHTTCCCSEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCcccccceeecc
Confidence 2 222333333 33 35666666653
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=81.25 E-value=4.9 Score=40.94 Aligned_cols=150 Identities=12% Similarity=0.040 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
.+.+.+++++|.+.|+.-+-+ +.++++..+. ..+..+. .+. ... +-|.. ..+.+--+.-++.+.+
T Consensus 17 ~~~i~~lc~~A~~~~~~aVcV--~P~~v~~a~~---~l~~s~v---~v~----~Vi--gFP~G-~~~~~~k~~e~~~ai~ 81 (211)
T d1ub3a_ 17 LEEVAKAAEEALEYGFYGLCI--PPSYVAWVRA---RYPHAPF---RLV----TVV--GFPLG-YQEKEVKALEAALACA 81 (211)
T ss_dssp HHHHHHHHHHHHHHTCSEEEC--CGGGHHHHHH---HCTTCSS---EEE----EEE--STTTC-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeEEEE--CHHHHHHHHH---HccCCCC---ceE----EEE--ecccc-cCcHHHHHHHHHHHHH
Confidence 445788999999999886544 4455554433 2222333 332 222 34544 4667777777888999
Q ss_pred CCCCEEEEccccCcC---CHHHHHHHHHHHHHHcCCce----EEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCC
Q psy15244 832 SGAQVLCLKDMAGLL---KPTAAKLLIGSFREKYPNIL----IHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC 904 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l---~P~~~~~lv~~lr~~~p~ip----i~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~t 904 (1427)
.|||.|-+.=-.|.+ .-+.+++-+..+++..++.+ |+.+..++.-.. ..+..|+++|||.|-+|. |++ +
T Consensus 82 ~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~-~a~~~a~~aGadfiKTST-G~~--~ 157 (211)
T d1ub3a_ 82 RGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIA-RLAEAAIRGGADFLKTST-GFG--P 157 (211)
T ss_dssp TTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHH-HHHHHHHHHTCSEEECCC-SSS--S
T ss_pred cCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHH-HHHHHHHHhccceEEecC-CCC--C
Confidence 999988776444544 34667777888888876443 455666554444 445688999999999986 443 4
Q ss_pred CCCcHHHHHHHHHhCC
Q psy15244 905 SQPAMGTIVSCLENTD 920 (1427)
Q Consensus 905 gn~~lE~vv~~L~~~g 920 (1427)
+.+..|.+..+.+..+
T Consensus 158 ~gat~e~v~~m~~~~~ 173 (211)
T d1ub3a_ 158 RGASLEDVALLVRVAQ 173 (211)
T ss_dssp CCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5567777766665433
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=80.82 E-value=6.3 Score=41.11 Aligned_cols=150 Identities=17% Similarity=0.027 Sum_probs=97.5
Q ss_pred cchHHHHHHHHHhcCCCEEEEeccCChHHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15244 752 PAEVGAFCRLASQAGIDIFRVFDPLNSVPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLAKQLVE 831 (1427)
Q Consensus 752 ~nvv~~~v~~a~~~Gid~~rif~~~nd~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a~~l~~ 831 (1427)
.+-+.+++++|.+.|+.-+-|+- +++...+..+ +..+. .+.. .. +-|.. ..+.+.-+.-++.+.+
T Consensus 50 ~e~i~~lc~~A~~~~~aaVcV~P--~~v~~a~~~L---~gs~v---~v~t----Vi--gFP~G-~~~~~~K~~Ea~~Ai~ 114 (251)
T d1o0ya_ 50 PDDIKKLCLEARENRFHGVCVNP--CYVKLAREEL---EGTDV---KVVT----VV--GFPLG-ANETRTKAHEAIFAVE 114 (251)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECG--GGHHHHHHHH---TTSCC---EEEE----EE--STTTC-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCceEEEECH--HHHHHHHHHh---cCCCc---eEEe----ec--cCCCC-CCcHHHHHHHHHHHHH
Confidence 45588899999999998765544 4555444433 33333 3322 22 35643 5777777777888999
Q ss_pred CCCCEEEEccccCcC---CHHHHHHHHHHHHHHcCCce----EEEeecCCcchHHHHHHHHHHhcCCEEEeccccCCCCC
Q psy15244 832 SGAQVLCLKDMAGLL---KPTAAKLLIGSFREKYPNIL----IHVHTHDMAGTGVATTLACVKAGADIVDVAADSMSGIC 904 (1427)
Q Consensus 832 ~Gad~i~i~Dt~G~l---~P~~~~~lv~~lr~~~p~ip----i~~H~Hnd~GlA~An~laAi~AGad~VD~av~GmG~~t 904 (1427)
.|||.|-+.=-.|.+ .-..+++-++.+++..++.+ |+.+..++.-.- ..+..|+++|||.|-+|.+ + .+
T Consensus 115 ~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~-~a~~ia~~aGadfvKTSTG-f--~~ 190 (251)
T d1o0ya_ 115 SGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKI-AACVISKLAGAHFVKTSTG-F--GT 190 (251)
T ss_dssp HTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHH-HHHHHHHHTTCSEEECCCS-S--SS
T ss_pred cCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHH-HHHHHHHHhCcceeeccCC-C--CC
Confidence 999988776555553 34567777888888765443 455666666555 4567889999999998863 3 24
Q ss_pred CCCcHHHHHHHHHhCC
Q psy15244 905 SQPAMGTIVSCLENTD 920 (1427)
Q Consensus 905 gn~~lE~vv~~L~~~g 920 (1427)
|.+..|.+-.+.+..+
T Consensus 191 ~gat~e~V~~m~~~~~ 206 (251)
T d1o0ya_ 191 GGATAEDVHLMKWIVG 206 (251)
T ss_dssp CCCCHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHhC
Confidence 5566776655554333
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.79 E-value=7.7 Score=40.37 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=102.1
Q ss_pred CCcchHHHHHHHHHhcCCCEEEEeccCCh---HHHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHHHH
Q psy15244 750 YSPAEVGAFCRLASQAGIDIFRVFDPLNS---VPNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYEDLA 826 (1427)
Q Consensus 750 ~~~nvv~~~v~~a~~~Gid~~rif~~~nd---~~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~~a 826 (1427)
++.+-.+.+++.|.+. ||.+.+....+- -+.+++-|+.++++|. .+ +..|.++--...+-. +-++.
T Consensus 23 lgl~~leD~Le~ag~y-ID~~K~g~Gt~~l~p~~~l~eKI~l~~~~~V---~v----~~GGtlfE~a~~qg~---~~~y~ 91 (251)
T d1qwga_ 23 LPPKFVEDYLKVCGDY-IDFVKFGWGTSAVIDRDVVKEKINYYKDWGI---KV----YPGGTLFEYAYSKGK---FDEFL 91 (251)
T ss_dssp CCHHHHHHHHHHHGGG-CSEEEECTTGGGGSCHHHHHHHHHHHHTTTC---EE----EECHHHHHHHHHTTC---HHHHH
T ss_pred CCHHHHHHHHHhhhhh-eeEEEecCceeeecCHHHHHHHHHHHHHcCC---eE----eCCcHHHHHHHHcCC---HHHHH
Confidence 4556677778876655 999999776653 3568999999999998 32 333322111011222 44555
Q ss_pred HHHHHCCCCEEEEccccCcCCHHHHHHHHHHHHHH-cCCceEEEeecCCc-------chHHHHHHHHHHhcCCEEEe--c
Q psy15244 827 KQLVESGAQVLCLKDMAGLLKPTAAKLLIGSFREK-YPNILIHVHTHDMA-------GTGVATTLACVKAGADIVDV--A 896 (1427)
Q Consensus 827 ~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lr~~-~p~ipi~~H~Hnd~-------GlA~An~laAi~AGad~VD~--a 896 (1427)
+.+.+.|.+.|-|.|...-+...+-.++|+.+++. + .+--++|..+.. -.-+-.+-..++|||+.|=. -
T Consensus 92 ~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~-~V~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEar 170 (251)
T d1qwga_ 92 NECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGF-MVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGR 170 (251)
T ss_dssp HHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTC-EEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCT
T ss_pred HHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCC-EEeecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEeehh
Confidence 66667799999999999999999999999999876 4 344455544211 12233466789999997633 2
Q ss_pred ----cccCCCCCCCCcHHHHHHHHH
Q psy15244 897 ----ADSMSGICSQPAMGTIVSCLE 917 (1427)
Q Consensus 897 ----v~GmG~~tgn~~lE~vv~~L~ 917 (1427)
--|+=+..|+.....+-..++
T Consensus 171 Esg~~~Gi~~~~g~~r~~~i~~i~~ 195 (251)
T d1qwga_ 171 ESGKGKGLFDKEGKVKENELDVLAK 195 (251)
T ss_dssp TTCCSSTTBCTTSCBCHHHHHHHHT
T ss_pred hcCCccceecCCCChhHHHHHHHHH
Confidence 235666777877554444443
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=80.13 E-value=1.4 Score=42.02 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=62.4
Q ss_pred CCEEEEEc----CCHHHHHHHHHHHHcCCEEEEEecCCCccC-----ccccccceEEEcCCCCCcccCCCC---HHHHHH
Q psy15244 57 MEKILIAN----RSEVAIRVARACNEMGIKSVGIYSEQDKFS-----AHRTKVDQAFLVGKGMPPVAAYLN---IPEIIC 124 (1427)
Q Consensus 57 ~kkVLIag----rGeia~riiraa~elGi~~vav~s~~d~~s-----~~~~~aDe~~~i~~~~~~~~~yld---i~~Ii~ 124 (1427)
.|+|.|+| .+-.+.++++.+++.|+..+.+...+.... .+..+.|- +.+.+-+.-+.. ..++++
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i----~~~iD~v~v~~p~~~v~~~v~ 88 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDL----KEPVDILDVFRPPSALMDHLP 88 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGC----CSCCSEEEECSCHHHHTTTHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhc----cCCCceEEEeccHHHHHHHHH
Confidence 45899998 345688999999999999888865432111 11111110 000011111222 234555
Q ss_pred HHHhcCCCEEEeCCCcccccHHHHHHHHHCCCceeCCC
Q psy15244 125 IAKNNNVDAIHPGYGFLSEREDFAKAVIGAGLEFIGPA 162 (1427)
Q Consensus 125 ia~~~~vDaI~pg~gflsE~~~~a~~~e~~Gi~fiGps 162 (1427)
-|.+.++.+++-..|+ ++.++++.++++|+.+++|.
T Consensus 89 ~~~~~g~k~i~~q~G~--~~~e~~~~a~~~Gi~vV~~~ 124 (136)
T d1iuka_ 89 EVLALRPGLVWLQSGI--RHPEFEKALKEAGIPVVADR 124 (136)
T ss_dssp HHHHHCCSCEEECTTC--CCHHHHHHHHHTTCCEEESC
T ss_pred HHHhhCCCeEEEecCc--cCHHHHHHHHHcCCEEEcCC
Confidence 5666788888888887 45678999999999999873
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=80.03 E-value=17 Score=38.25 Aligned_cols=132 Identities=8% Similarity=0.055 Sum_probs=87.8
Q ss_pred cCHHHHHHHHHHHHhhcCCccEEeccCCCchhhhhhccccChHHHHHHHHHhCCCCceeeeecccccccccCCCcchHHH
Q psy15244 678 VRTYDLKKVSPFVANRFNNLYSLEMWGGAVSHTCLKFLKECPWERLAELRELIPNIPFQMILRGNSLVGYSNYSPAEVGA 757 (1427)
Q Consensus 678 ~~t~d~l~ia~~l~~~~~G~~~iE~~ggatfd~~~rfl~e~p~erl~~lr~~~p~~~~qml~Rg~n~vgy~~~~~nvv~~ 757 (1427)
|+.+++.++++.+.+ .|+..+...||-- +++.+-++.+...++... ....++.-|. -...+
T Consensus 48 ls~e~~~~li~~~~~--~g~~~v~~~GGEp------~l~~~~~e~i~~~~~~~~-~~~~~~Tng~----------ll~~~ 108 (327)
T d1tv8a_ 48 LTFDEMARIAKVYAE--LGVKKIRITGGEP------LMRRDLDVLIAKLNQIDG-IEDIGLTTNG----------LLLKK 108 (327)
T ss_dssp CCHHHHHHHHHHHHH--TTCCEEEEESSCG------GGSTTHHHHHHHHTTCTT-CCEEEEEECS----------TTHHH
T ss_pred CCHHHHHHHHHHHHH--cCCeEEEeCCCcc------cccccHHHHHHHHhhhcc-cccccccccc----------ccchh
Confidence 889999999999998 7999999877643 456554555544433222 2223333232 12455
Q ss_pred HHHHHHhcCCCEEEEeccCChH-------------HHHHHHHHHHHHhcCCCcEEEEEEEeeccCCCCCCCCCCHHHHHH
Q psy15244 758 FCRLASQAGIDIFRVFDPLNSV-------------PNLVKGMDAVQQVTGGSTIVEATICYAGDLTNPNKKKYSLNYYED 824 (1427)
Q Consensus 758 ~v~~a~~~Gid~~rif~~~nd~-------------~~~~~~i~~a~~~G~~~~~v~~~i~~t~d~~~p~~~~~~~~~~~~ 824 (1427)
.++...++|++.+.|.....+- +....+++.++++|. .+....+... ..+.+.+.+
T Consensus 109 ~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~---~~~~~~~v~~--------~~n~~~~~~ 177 (327)
T d1tv8a_ 109 HGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL---NVKVNVVIQK--------GINDDQIIP 177 (327)
T ss_dssp HHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC---EEEEEEEECT--------TTTGGGHHH
T ss_pred HHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCC---CcceeEEEec--------CccccccHH
Confidence 6778888999998887766532 355677888888888 6665554431 256667778
Q ss_pred HHHHHHHCCCCEEEE
Q psy15244 825 LAKQLVESGAQVLCL 839 (1427)
Q Consensus 825 ~a~~l~~~Gad~i~i 839 (1427)
+.+.+.+.|++...+
T Consensus 178 ~~~~~~~~~~~~~~~ 192 (327)
T d1tv8a_ 178 MLEYFKDKHIEIRFI 192 (327)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHhhcccccee
Confidence 888888888875443
|